Query 002389
Match_columns 929
No_of_seqs 800 out of 3728
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 22:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4E-37 8.7E-42 326.2 24.8 280 635-928 106-438 (480)
2 KOG0293 WD40 repeat-containing 100.0 2.7E-33 5.7E-38 299.5 24.8 334 555-928 151-512 (519)
3 KOG0271 Notchless-like WD40 re 100.0 2.7E-33 5.9E-38 297.2 24.6 274 646-927 154-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-33 1.2E-37 298.8 22.7 272 647-928 173-459 (459)
5 KOG0286 G-protein beta subunit 100.0 2.7E-28 5.9E-33 252.3 32.1 276 643-927 49-343 (343)
6 KOG0315 G-protein beta subunit 100.0 1.6E-28 3.6E-33 248.8 28.7 259 661-928 12-287 (311)
7 KOG0279 G protein beta subunit 100.0 2E-27 4.2E-32 244.8 32.6 274 645-928 11-312 (315)
8 KOG0295 WD40 repeat-containing 100.0 1.8E-28 3.8E-33 260.0 23.8 273 647-928 106-405 (406)
9 KOG0281 Beta-TrCP (transducin 100.0 1.7E-29 3.6E-34 265.1 15.8 267 647-929 195-477 (499)
10 KOG0285 Pleiotropic regulator 100.0 2.7E-28 6E-33 257.4 24.7 272 644-927 146-437 (460)
11 KOG0265 U5 snRNP-specific prot 100.0 2E-27 4.4E-32 246.8 28.0 273 645-926 43-335 (338)
12 KOG0273 Beta-transducin family 100.0 2.1E-27 4.6E-32 258.5 29.3 269 649-928 235-522 (524)
13 KOG0315 G-protein beta subunit 100.0 3.4E-27 7.5E-32 239.3 28.7 268 634-909 30-308 (311)
14 KOG0263 Transcription initiati 100.0 1.5E-27 3.2E-32 274.3 24.7 235 649-928 378-648 (707)
15 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-28 1.2E-32 260.4 18.6 233 646-888 214-458 (459)
16 cd00200 WD40 WD40 domain, foun 100.0 1.9E-25 4E-30 237.0 36.8 271 647-927 7-289 (289)
17 KOG0282 mRNA splicing factor [ 100.0 1.1E-27 2.4E-32 261.9 19.3 275 646-927 211-503 (503)
18 KOG0313 Microtubule binding pr 100.0 1.2E-26 2.6E-31 247.2 25.2 270 647-927 103-416 (423)
19 KOG0319 WD40-repeat-containing 100.0 1.4E-26 3E-31 263.5 26.5 286 635-928 138-576 (775)
20 KOG0273 Beta-transducin family 100.0 2.3E-26 4.9E-31 250.6 26.8 276 643-928 173-481 (524)
21 KOG0316 Conserved WD40 repeat- 99.9 4.3E-26 9.4E-31 229.6 26.1 270 644-926 12-296 (307)
22 KOG0286 G-protein beta subunit 99.9 1.1E-25 2.4E-30 233.0 28.7 238 684-929 48-303 (343)
23 KOG0645 WD40 repeat protein [G 99.9 5.4E-25 1.2E-29 226.0 31.9 274 644-928 9-310 (312)
24 KOG0284 Polyadenylation factor 99.9 5.8E-27 1.3E-31 251.4 16.5 269 649-927 96-378 (464)
25 PLN00181 protein SPA1-RELATED; 99.9 1.3E-24 2.8E-29 271.2 40.0 274 647-929 481-793 (793)
26 KOG0266 WD40 repeat-containing 99.9 3.3E-25 7.2E-30 259.0 30.9 278 646-928 156-453 (456)
27 KOG0318 WD40 repeat stress pro 99.9 2E-24 4.4E-29 237.9 33.3 276 646-928 187-601 (603)
28 KOG0291 WD40-repeat-containing 99.9 2.2E-24 4.8E-29 245.5 34.0 289 621-928 287-611 (893)
29 KOG0279 G protein beta subunit 99.9 7.2E-25 1.6E-29 226.0 26.1 235 644-890 58-313 (315)
30 KOG0319 WD40-repeat-containing 99.9 5E-25 1.1E-29 250.9 26.8 271 647-927 321-617 (775)
31 KOG0276 Vesicle coat complex C 99.9 5.7E-25 1.2E-29 245.6 25.6 269 647-925 11-295 (794)
32 KOG0281 Beta-TrCP (transducin 99.9 2.8E-26 6.1E-31 241.0 13.4 228 690-928 196-427 (499)
33 KOG0288 WD40 repeat protein Ti 99.9 8.7E-26 1.9E-30 242.8 16.7 273 646-927 172-459 (459)
34 KOG0263 Transcription initiati 99.9 1.7E-24 3.8E-29 249.2 27.6 269 576-891 363-650 (707)
35 KOG0292 Vesicle coat complex C 99.9 1.2E-24 2.5E-29 250.4 26.0 275 648-927 8-319 (1202)
36 KOG0296 Angio-associated migra 99.9 1.5E-23 3.2E-28 222.9 31.3 277 647-928 62-397 (399)
37 KOG0274 Cdc4 and related F-box 99.9 4.9E-24 1.1E-28 250.1 29.4 269 647-928 206-481 (537)
38 KOG0291 WD40-repeat-containing 99.9 5.6E-23 1.2E-27 234.1 32.6 271 649-928 265-549 (893)
39 KOG0278 Serine/threonine kinas 99.9 1.2E-24 2.7E-29 220.6 17.0 270 645-928 10-296 (334)
40 KOG0285 Pleiotropic regulator 99.9 4.8E-24 1E-28 225.5 20.7 236 683-927 143-387 (460)
41 KOG0318 WD40 repeat stress pro 99.9 3.3E-22 7.1E-27 220.6 35.1 273 647-928 145-559 (603)
42 KOG0306 WD40-repeat-containing 99.9 2.4E-23 5.2E-28 237.0 26.4 271 646-928 370-663 (888)
43 KOG1407 WD40 repeat protein [F 99.9 6.7E-23 1.4E-27 209.6 26.9 274 646-926 17-308 (313)
44 KOG0284 Polyadenylation factor 99.9 4.4E-24 9.6E-29 229.3 13.8 230 691-928 96-336 (464)
45 KOG0295 WD40 repeat-containing 99.9 2.8E-23 6E-28 220.7 19.5 258 663-928 80-363 (406)
46 KOG0643 Translation initiation 99.9 4.6E-22 1E-26 204.0 25.7 271 645-926 6-314 (327)
47 KOG0268 Sof1-like rRNA process 99.9 2.2E-23 4.8E-28 221.1 15.7 267 646-927 63-343 (433)
48 KOG0301 Phospholipase A2-activ 99.9 5.4E-22 1.2E-26 224.9 27.4 268 646-927 11-286 (745)
49 KOG0645 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 200.7 27.8 237 682-927 5-259 (312)
50 KOG0275 Conserved WD40 repeat- 99.9 8.1E-23 1.8E-27 213.2 17.0 276 647-928 211-508 (508)
51 cd00200 WD40 WD40 domain, foun 99.9 3.9E-21 8.4E-26 203.8 30.4 236 685-928 3-248 (289)
52 KOG0274 Cdc4 and related F-box 99.9 1.2E-21 2.7E-26 229.9 27.3 253 633-900 232-492 (537)
53 PLN00181 protein SPA1-RELATED; 99.9 4.5E-21 9.7E-26 239.5 34.0 237 648-889 531-792 (793)
54 KOG0306 WD40-repeat-containing 99.9 5.1E-21 1.1E-25 218.2 30.9 273 649-928 65-483 (888)
55 KOG0292 Vesicle coat complex C 99.9 1.6E-21 3.4E-26 224.9 26.9 244 647-899 49-330 (1202)
56 KOG0266 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 228.3 27.2 236 646-890 200-454 (456)
57 KOG0293 WD40 repeat-containing 99.9 5.5E-22 1.2E-26 213.2 20.8 235 646-891 266-514 (519)
58 KOG0278 Serine/threonine kinas 99.9 1.5E-22 3.3E-27 205.5 14.3 249 630-895 45-302 (334)
59 KOG0316 Conserved WD40 repeat- 99.9 1.1E-21 2.5E-26 197.9 20.4 236 684-929 10-257 (307)
60 KOG0647 mRNA export protein (c 99.9 3E-21 6.4E-26 201.2 24.1 266 642-917 20-311 (347)
61 KOG0283 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 226.7 22.3 239 647-891 265-577 (712)
62 KOG0276 Vesicle coat complex C 99.9 7.7E-21 1.7E-25 212.8 26.5 283 610-902 16-310 (794)
63 KOG0313 Microtubule binding pr 99.9 6.6E-21 1.4E-25 203.6 23.3 246 635-889 135-417 (423)
64 KOG0265 U5 snRNP-specific prot 99.9 8.5E-21 1.9E-25 197.7 22.7 238 683-928 39-295 (338)
65 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-19 4.1E-24 189.6 32.6 276 648-928 13-302 (311)
66 KOG0277 Peroxisomal targeting 99.9 6.9E-21 1.5E-25 194.3 21.1 269 653-928 12-308 (311)
67 KOG0277 Peroxisomal targeting 99.9 2.4E-21 5.3E-26 197.5 17.2 235 648-889 59-308 (311)
68 KOG1036 Mitotic spindle checkp 99.9 4.1E-20 8.9E-25 193.6 26.5 264 645-919 9-294 (323)
69 KOG0296 Angio-associated migra 99.9 6E-20 1.3E-24 195.6 28.0 232 647-890 104-398 (399)
70 KOG0294 WD40 repeat-containing 99.9 1.1E-19 2.4E-24 190.4 26.4 252 645-908 39-304 (362)
71 KOG0305 Anaphase promoting com 99.9 1.2E-19 2.7E-24 206.5 27.6 265 655-929 183-461 (484)
72 KOG0310 Conserved WD40 repeat- 99.9 4.1E-20 8.9E-25 203.3 22.6 266 648-925 25-305 (487)
73 KOG0640 mRNA cleavage stimulat 99.9 3.5E-20 7.5E-25 193.2 20.4 276 647-927 110-424 (430)
74 KOG0772 Uncharacterized conser 99.8 7.5E-20 1.6E-24 201.3 23.0 277 646-926 164-484 (641)
75 KOG0283 WD40 repeat-containing 99.8 4.3E-20 9.4E-25 214.8 22.3 238 683-928 258-575 (712)
76 KOG1408 WD40 repeat protein [F 99.8 1.2E-19 2.5E-24 205.2 24.5 267 659-928 392-712 (1080)
77 KOG0282 mRNA splicing factor [ 99.8 1E-20 2.2E-25 207.6 15.1 238 683-927 206-460 (503)
78 PTZ00420 coronin; Provisional 99.8 9.9E-19 2.2E-23 206.2 32.9 225 664-928 49-292 (568)
79 KOG0289 mRNA splicing factor [ 99.8 3.1E-19 6.7E-24 193.4 25.7 269 649-927 219-504 (506)
80 KOG0973 Histone transcription 99.8 4.2E-19 9.1E-24 211.1 28.2 279 648-927 12-353 (942)
81 KOG0308 Conserved WD40 repeat- 99.8 2.8E-20 6.1E-25 209.6 17.2 274 647-927 19-325 (735)
82 KOG0305 Anaphase promoting com 99.8 1.9E-19 4E-24 205.0 23.7 238 644-892 212-463 (484)
83 PTZ00421 coronin; Provisional 99.8 2.8E-18 6E-23 201.1 33.5 247 659-911 32-313 (493)
84 KOG0299 U3 snoRNP-associated p 99.8 6.9E-19 1.5E-23 192.3 26.0 271 646-926 139-453 (479)
85 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9.4E-18 2E-22 182.9 34.0 259 660-928 2-278 (300)
86 KOG0288 WD40 repeat protein Ti 99.8 7.7E-20 1.7E-24 197.2 16.8 234 647-887 217-458 (459)
87 KOG0300 WD40 repeat-containing 99.8 4.7E-19 1E-23 184.9 20.9 274 644-928 143-475 (481)
88 KOG0264 Nucleosome remodeling 99.8 7.5E-19 1.6E-23 192.3 23.0 247 647-928 122-403 (422)
89 PTZ00420 coronin; Provisional 99.8 9.9E-18 2.1E-22 197.8 33.0 222 646-912 71-317 (568)
90 KOG0308 Conserved WD40 repeat- 99.8 3.1E-19 6.7E-24 201.3 19.2 237 690-927 20-283 (735)
91 PTZ00421 coronin; Provisional 99.8 7E-18 1.5E-22 197.8 30.6 220 646-871 72-314 (493)
92 KOG2445 Nuclear pore complex c 99.8 1E-17 2.3E-22 175.2 26.3 253 645-928 9-317 (361)
93 KOG0294 WD40 repeat-containing 99.8 7.9E-18 1.7E-22 176.7 25.0 254 661-928 3-280 (362)
94 KOG1407 WD40 repeat protein [F 99.8 1.9E-18 4.1E-23 177.2 19.9 232 685-925 14-257 (313)
95 KOG0310 Conserved WD40 repeat- 99.8 3.3E-18 7.2E-23 188.3 23.2 232 648-889 67-308 (487)
96 KOG1332 Vesicle coat complex C 99.8 1.4E-18 3E-23 176.7 18.6 242 643-889 5-285 (299)
97 KOG1539 WD repeat protein [Gen 99.8 8.1E-18 1.8E-22 194.5 26.9 272 647-927 241-646 (910)
98 KOG0275 Conserved WD40 repeat- 99.8 3.2E-19 7E-24 186.4 13.9 234 647-888 261-507 (508)
99 KOG0639 Transducin-like enhanc 99.8 1.9E-18 4.2E-23 189.4 20.5 272 647-928 417-703 (705)
100 KOG0641 WD40 repeat protein [G 99.8 1.4E-16 3E-21 160.0 31.7 277 648-927 31-347 (350)
101 KOG2055 WD40 repeat protein [G 99.8 9.4E-18 2E-22 183.4 23.5 276 646-928 210-511 (514)
102 KOG0643 Translation initiation 99.8 1.9E-17 4.1E-22 170.3 22.6 231 686-918 5-250 (327)
103 KOG0650 WD40 repeat nucleolar 99.8 2.4E-17 5.3E-22 184.4 24.8 271 646-926 397-732 (733)
104 KOG1446 Histone H3 (Lys4) meth 99.8 1.5E-16 3.2E-21 167.8 29.1 236 684-928 7-261 (311)
105 KOG0640 mRNA cleavage stimulat 99.8 4.2E-18 9.2E-23 177.7 17.1 247 643-890 166-426 (430)
106 KOG0301 Phospholipase A2-activ 99.8 2.8E-17 6E-22 187.0 24.9 227 647-890 55-288 (745)
107 KOG0289 mRNA splicing factor [ 99.8 3.1E-17 6.7E-22 178.0 22.6 230 692-927 220-460 (506)
108 KOG0646 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 183.2 19.1 226 649-909 81-327 (476)
109 KOG2048 WD40 repeat protein [G 99.8 2.9E-16 6.3E-21 178.7 30.0 272 649-925 25-315 (691)
110 KOG0300 WD40 repeat-containing 99.8 2.5E-17 5.5E-22 172.1 19.4 238 647-892 188-478 (481)
111 KOG0647 mRNA export protein (c 99.8 8.4E-17 1.8E-21 168.2 22.6 225 644-878 67-311 (347)
112 KOG0973 Histone transcription 99.8 4.5E-17 9.8E-22 194.0 23.4 238 647-891 67-356 (942)
113 KOG1539 WD repeat protein [Gen 99.8 1.1E-15 2.4E-20 177.0 33.5 280 646-928 199-605 (910)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.7E-15 3.8E-20 165.1 33.2 256 651-910 32-299 (300)
115 KOG1036 Mitotic spindle checkp 99.8 1.5E-16 3.3E-21 167.0 23.4 228 645-880 50-294 (323)
116 KOG0299 U3 snoRNP-associated p 99.7 7.3E-17 1.6E-21 176.7 21.4 228 647-879 200-444 (479)
117 KOG2096 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 166.9 22.8 249 636-888 73-400 (420)
118 KOG0268 Sof1-like rRNA process 99.7 7.1E-18 1.5E-22 179.5 12.1 236 683-928 58-301 (433)
119 KOG1063 RNA polymerase II elon 99.7 2.5E-16 5.5E-21 179.2 25.1 284 645-928 263-647 (764)
120 KOG1274 WD40 repeat protein [G 99.7 2.7E-16 5.9E-21 183.9 25.8 232 689-928 11-261 (933)
121 KOG0641 WD40 repeat protein [G 99.7 1.6E-15 3.6E-20 152.3 26.9 238 645-890 85-349 (350)
122 KOG0321 WD40 repeat-containing 99.7 2.9E-16 6.2E-21 177.3 23.8 267 661-928 66-390 (720)
123 KOG1332 Vesicle coat complex C 99.7 9.7E-17 2.1E-21 163.4 18.1 237 688-928 8-285 (299)
124 KOG0772 Uncharacterized conser 99.7 8.4E-17 1.8E-21 177.5 18.6 242 685-928 161-444 (641)
125 KOG1274 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 177.9 29.2 257 646-910 10-279 (933)
126 KOG1273 WD40 repeat protein [G 99.7 2E-16 4.3E-21 165.9 19.8 237 652-891 26-323 (405)
127 KOG2106 Uncharacterized conser 99.7 4.8E-15 1E-19 163.5 31.0 264 649-928 246-520 (626)
128 KOG0646 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 168.6 23.4 258 665-928 13-306 (476)
129 KOG4283 Transcription-coupled 99.7 2.2E-15 4.7E-20 156.8 25.0 278 646-928 40-364 (397)
130 KOG4328 WD40 protein [Function 99.7 1.1E-15 2.3E-20 167.4 23.0 278 647-927 184-493 (498)
131 KOG0269 WD40 repeat-containing 99.7 7.9E-17 1.7E-21 185.2 14.8 235 651-891 89-341 (839)
132 KOG0302 Ribosome Assembly prot 99.7 9.9E-16 2.2E-20 164.1 21.2 239 647-928 149-437 (440)
133 KOG0642 Cell-cycle nuclear pro 99.7 4.1E-16 8.8E-21 174.5 17.1 254 647-901 292-572 (577)
134 KOG2096 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 159.0 20.3 223 673-928 65-307 (420)
135 KOG0267 Microtubule severing p 99.7 4.7E-17 1E-21 185.6 8.8 227 647-920 26-259 (825)
136 KOG0321 WD40 repeat-containing 99.7 1.6E-15 3.4E-20 171.4 20.7 242 646-892 97-393 (720)
137 KOG0264 Nucleosome remodeling 99.7 9.5E-16 2.1E-20 168.1 18.3 213 688-928 121-346 (422)
138 KOG2106 Uncharacterized conser 99.7 7.6E-14 1.6E-18 154.1 31.7 265 649-928 200-476 (626)
139 KOG1408 WD40 repeat protein [F 99.7 1.5E-15 3.2E-20 172.5 18.5 239 647-891 457-714 (1080)
140 KOG4378 Nuclear protein COP1 [ 99.7 3.9E-15 8.4E-20 163.7 20.6 257 665-928 8-279 (673)
141 KOG1063 RNA polymerase II elon 99.7 5E-15 1.1E-19 168.7 22.2 278 646-928 188-601 (764)
142 KOG0269 WD40 repeat-containing 99.6 4.5E-15 9.8E-20 170.9 18.6 268 650-924 40-335 (839)
143 KOG0270 WD40 repeat-containing 99.6 4.6E-15 1E-19 162.1 17.7 230 659-895 192-454 (463)
144 KOG0322 G-protein beta subunit 99.6 3.3E-15 7.1E-20 153.8 14.9 277 647-928 12-322 (323)
145 KOG0307 Vesicle coat complex C 99.6 1.2E-15 2.6E-20 182.7 13.1 240 649-928 64-326 (1049)
146 KOG0270 WD40 repeat-containing 99.6 5.7E-14 1.2E-18 153.6 23.9 231 693-929 175-449 (463)
147 KOG1538 Uncharacterized conser 99.6 2.4E-14 5.2E-19 161.5 21.5 265 651-928 14-292 (1081)
148 KOG1188 WD40 repeat protein [G 99.6 2.7E-14 5.9E-19 151.8 20.5 260 660-927 41-344 (376)
149 KOG0267 Microtubule severing p 99.6 5.5E-16 1.2E-20 177.0 8.1 190 646-882 67-260 (825)
150 KOG0302 Ribosome Assembly prot 99.6 1.7E-14 3.8E-19 154.6 17.9 215 687-928 147-377 (440)
151 KOG1034 Transcriptional repres 99.6 4.4E-14 9.6E-19 149.4 20.3 284 620-928 63-382 (385)
152 KOG2048 WD40 repeat protein [G 99.6 6.6E-13 1.4E-17 151.7 30.5 233 647-890 67-319 (691)
153 COG2319 FOG: WD40 repeat [Gene 99.6 6.2E-12 1.3E-16 139.6 36.6 276 645-928 151-441 (466)
154 KOG4378 Nuclear protein COP1 [ 99.6 7.4E-14 1.6E-18 153.7 19.6 251 651-911 36-303 (673)
155 KOG0644 Uncharacterized conser 99.6 5.8E-15 1.3E-19 170.4 11.2 263 646-926 187-465 (1113)
156 KOG0650 WD40 repeat nucleolar 99.6 8.7E-14 1.9E-18 156.3 20.2 233 684-926 393-677 (733)
157 COG2319 FOG: WD40 repeat [Gene 99.6 1.4E-11 3E-16 136.9 37.0 275 646-928 62-358 (466)
158 PRK11028 6-phosphogluconolacto 99.6 3.8E-12 8.2E-17 143.0 32.6 266 662-928 5-303 (330)
159 KOG0639 Transducin-like enhanc 99.6 4.7E-14 1E-18 155.3 15.8 231 649-889 465-703 (705)
160 KOG4283 Transcription-coupled 99.6 3.3E-13 7.3E-18 140.7 21.1 238 645-889 97-364 (397)
161 KOG4227 WD40 repeat protein [G 99.6 4.9E-13 1.1E-17 143.4 22.6 281 646-928 53-386 (609)
162 KOG2919 Guanine nucleotide-bin 99.5 2.1E-13 4.5E-18 143.9 19.0 235 694-928 52-326 (406)
163 KOG1587 Cytoplasmic dynein int 99.5 1.1E-12 2.3E-17 153.9 25.9 258 668-928 221-515 (555)
164 KOG1334 WD40 repeat protein [G 99.5 5E-14 1.1E-18 155.3 13.9 281 646-929 139-466 (559)
165 KOG1517 Guanine nucleotide bin 99.5 5.2E-13 1.1E-17 157.8 22.9 243 648-893 1108-1384(1387)
166 KOG2055 WD40 repeat protein [G 99.5 2.8E-13 6.1E-18 148.7 19.0 242 649-890 257-512 (514)
167 KOG1517 Guanine nucleotide bin 99.5 7.8E-13 1.7E-17 156.4 23.8 272 649-928 1064-1380(1387)
168 KOG4328 WD40 protein [Function 99.5 7.1E-13 1.5E-17 145.5 21.5 240 684-928 179-449 (498)
169 KOG0290 Conserved WD40 repeat- 99.5 9.2E-13 2E-17 137.4 21.2 264 650-920 45-357 (364)
170 KOG1445 Tumor-specific antigen 99.5 5E-13 1.1E-17 150.4 20.6 176 752-927 601-796 (1012)
171 KOG1240 Protein kinase contain 99.5 2.5E-12 5.4E-17 154.5 27.6 253 632-891 1032-1335(1431)
172 KOG1445 Tumor-specific antigen 99.5 4.1E-13 8.8E-18 151.1 18.7 118 644-762 74-200 (1012)
173 KOG0303 Actin-binding protein 99.5 9.7E-13 2.1E-17 142.0 19.9 206 645-894 77-298 (472)
174 KOG2110 Uncharacterized conser 99.5 7.6E-12 1.6E-16 134.7 26.5 232 691-928 5-247 (391)
175 KOG1007 WD repeat protein TSSC 99.5 2.5E-12 5.5E-17 134.0 21.0 244 647-926 61-358 (370)
176 KOG0649 WD40 repeat protein [G 99.5 6.4E-12 1.4E-16 128.3 22.0 224 693-927 12-272 (325)
177 KOG2445 Nuclear pore complex c 99.5 2.1E-11 4.6E-16 128.4 25.0 244 630-906 45-337 (361)
178 KOG1034 Transcriptional repres 99.5 1E-12 2.2E-17 139.2 15.1 214 647-890 133-383 (385)
179 KOG1009 Chromatin assembly com 99.4 3.3E-11 7.2E-16 131.0 25.1 276 649-925 13-368 (434)
180 KOG2919 Guanine nucleotide-bin 99.4 1.3E-11 2.9E-16 130.4 21.5 260 652-919 52-360 (406)
181 KOG1009 Chromatin assembly com 99.4 6.8E-12 1.5E-16 136.3 19.7 241 645-894 61-376 (434)
182 KOG1188 WD40 repeat protein [G 99.4 3E-12 6.5E-17 136.4 16.1 244 646-890 67-346 (376)
183 KOG0642 Cell-cycle nuclear pro 99.4 1.9E-12 4E-17 145.5 15.1 238 684-928 287-560 (577)
184 KOG1963 WD40 repeat protein [G 99.4 1.3E-10 2.7E-15 137.0 28.7 289 638-928 194-537 (792)
185 KOG0649 WD40 repeat protein [G 99.4 1.1E-10 2.3E-15 119.5 24.3 263 654-927 15-314 (325)
186 KOG1273 WD40 repeat protein [G 99.4 4.9E-11 1.1E-15 125.8 22.3 191 694-889 26-225 (405)
187 KOG0307 Vesicle coat complex C 99.4 1.5E-12 3.3E-17 156.4 11.8 206 646-893 113-330 (1049)
188 KOG1538 Uncharacterized conser 99.4 8.1E-12 1.8E-16 141.5 16.7 225 647-890 51-293 (1081)
189 PRK11028 6-phosphogluconolacto 99.4 4.7E-10 1E-14 126.0 30.3 258 649-908 34-326 (330)
190 KOG0303 Actin-binding protein 99.3 3.7E-11 8E-16 130.0 18.7 204 686-928 76-293 (472)
191 KOG1587 Cytoplasmic dynein int 99.3 8.2E-11 1.8E-15 138.2 22.7 239 648-891 241-517 (555)
192 PRK01742 tolB translocation pr 99.3 8.5E-11 1.8E-15 137.1 22.4 210 668-928 183-400 (429)
193 KOG1240 Protein kinase contain 99.3 3E-10 6.4E-15 137.0 25.4 247 674-928 1034-1333(1431)
194 KOG1523 Actin-related protein 99.3 6.6E-11 1.4E-15 125.4 17.7 214 649-893 10-239 (361)
195 KOG0771 Prolactin regulatory e 99.3 4E-11 8.6E-16 131.3 15.7 200 653-889 148-353 (398)
196 KOG1272 WD40-repeat-containing 99.3 1.3E-11 2.8E-16 135.8 11.2 226 693-927 131-360 (545)
197 KOG4227 WD40 repeat protein [G 99.3 1.8E-10 3.8E-15 124.1 18.9 240 685-928 50-321 (609)
198 KOG2394 WD40 protein DMR-N9 [G 99.3 3.2E-10 7E-15 126.9 20.3 216 693-910 125-383 (636)
199 KOG1007 WD repeat protein TSSC 99.3 2.5E-10 5.4E-15 119.4 18.0 215 712-928 39-288 (370)
200 KOG1310 WD40 repeat protein [G 99.2 9.6E-11 2.1E-15 130.9 15.3 231 646-898 47-311 (758)
201 KOG1963 WD40 repeat protein [G 99.2 1.6E-09 3.5E-14 127.8 25.3 267 656-927 23-320 (792)
202 KOG2111 Uncharacterized conser 99.2 4.2E-09 9.2E-14 111.9 25.5 229 693-928 7-255 (346)
203 KOG2110 Uncharacterized conser 99.2 2.4E-08 5.3E-13 108.1 30.3 231 649-891 5-249 (391)
204 KOG3881 Uncharacterized conser 99.2 6.5E-10 1.4E-14 120.7 18.3 255 648-910 54-340 (412)
205 KOG0644 Uncharacterized conser 99.2 2.9E-11 6.4E-16 140.3 8.0 236 646-894 229-472 (1113)
206 KOG4497 Uncharacterized conser 99.2 7.7E-09 1.7E-13 110.0 25.2 270 650-922 49-425 (447)
207 PRK03629 tolB translocation pr 99.2 9.2E-09 2E-13 120.0 28.3 230 669-911 179-427 (429)
208 KOG2111 Uncharacterized conser 99.2 5.7E-09 1.2E-13 110.9 23.1 230 651-891 7-257 (346)
209 KOG1334 WD40 repeat protein [G 99.1 6E-10 1.3E-14 123.6 14.2 241 684-927 135-422 (559)
210 KOG2321 WD40 repeat protein [G 99.1 3.5E-09 7.7E-14 119.4 20.0 230 689-928 49-301 (703)
211 KOG1354 Serine/threonine prote 99.1 1.7E-09 3.7E-14 115.6 16.5 264 648-927 24-357 (433)
212 PRK05137 tolB translocation pr 99.1 4.2E-08 9E-13 114.8 28.7 227 669-910 182-431 (435)
213 KOG1524 WD40 repeat-containing 99.1 5.3E-09 1.1E-13 117.0 19.8 252 647-925 12-282 (737)
214 PRK01742 tolB translocation pr 99.1 6.9E-09 1.5E-13 121.1 21.5 209 647-871 201-426 (429)
215 PRK04922 tolB translocation pr 99.1 2E-08 4.4E-13 117.4 25.1 229 669-910 184-431 (433)
216 PF02239 Cytochrom_D1: Cytochr 99.1 1.1E-07 2.5E-12 108.4 30.3 259 662-928 9-346 (369)
217 PRK02889 tolB translocation pr 99.0 3.4E-08 7.4E-13 115.2 25.5 230 669-911 176-424 (427)
218 KOG0290 Conserved WD40 repeat- 99.0 8.8E-09 1.9E-13 108.1 17.6 181 646-827 147-345 (364)
219 KOG1524 WD40 repeat-containing 99.0 4.7E-09 1E-13 117.4 16.4 226 689-924 12-250 (737)
220 KOG0322 G-protein beta subunit 99.0 2.1E-09 4.6E-14 111.4 12.2 242 683-927 6-279 (323)
221 KOG0771 Prolactin regulatory e 99.0 1.3E-08 2.8E-13 111.9 16.3 187 736-927 148-352 (398)
222 KOG1310 WD40 repeat protein [G 99.0 7.2E-09 1.6E-13 116.2 14.6 172 684-888 43-229 (758)
223 TIGR03300 assembly_YfgL outer 99.0 4.3E-07 9.3E-12 104.1 29.5 255 656-927 102-377 (377)
224 KOG2041 WD40 repeat protein [G 98.9 5.1E-08 1.1E-12 112.0 20.3 272 648-925 13-333 (1189)
225 KOG2139 WD40 repeat protein [G 98.9 2.5E-07 5.4E-12 99.9 24.2 253 647-927 138-429 (445)
226 KOG2321 WD40 repeat protein [G 98.9 2.6E-07 5.7E-12 104.7 24.6 271 647-926 49-340 (703)
227 PF10282 Lactonase: Lactonase, 98.9 5.7E-06 1.2E-10 93.9 35.8 265 662-928 2-321 (345)
228 TIGR02800 propeller_TolB tol-p 98.9 5.6E-07 1.2E-11 104.3 27.3 207 668-921 169-386 (417)
229 KOG1064 RAVE (regulator of V-A 98.9 8.7E-09 1.9E-13 128.1 12.0 207 665-928 2186-2397(2439)
230 KOG1523 Actin-related protein 98.9 1.6E-07 3.4E-12 100.2 19.8 221 620-872 31-261 (361)
231 KOG3881 Uncharacterized conser 98.9 1.3E-07 2.8E-12 103.2 19.3 230 690-928 54-319 (412)
232 KOG0974 WD-repeat protein WDR6 98.9 1.1E-07 2.3E-12 114.4 20.0 260 648-928 6-287 (967)
233 KOG4547 WD40 repeat-containing 98.8 8.2E-08 1.8E-12 109.6 17.9 202 700-927 2-218 (541)
234 PRK04922 tolB translocation pr 98.8 5.9E-07 1.3E-11 105.1 25.5 204 713-927 184-409 (433)
235 COG5170 CDC55 Serine/threonine 98.8 3E-08 6.6E-13 104.7 12.8 266 648-926 25-364 (460)
236 TIGR03300 assembly_YfgL outer 98.8 2.2E-06 4.8E-11 98.2 29.3 260 655-928 61-337 (377)
237 PF10282 Lactonase: Lactonase, 98.8 1.6E-05 3.4E-10 90.3 35.3 259 650-909 37-345 (345)
238 KOG2315 Predicted translation 98.8 1.7E-06 3.7E-11 98.4 26.0 265 649-928 34-389 (566)
239 PRK00178 tolB translocation pr 98.8 2.1E-06 4.5E-11 100.3 28.2 228 670-910 180-426 (430)
240 PRK03629 tolB translocation pr 98.8 8E-07 1.7E-11 103.8 24.6 212 647-870 196-427 (429)
241 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.4E-05 3.1E-10 89.9 33.4 253 669-928 27-329 (352)
242 KOG2139 WD40 repeat protein [G 98.8 2.1E-07 4.5E-12 100.5 17.5 192 692-914 99-295 (445)
243 KOG1272 WD40-repeat-containing 98.7 6.7E-09 1.5E-13 114.8 4.5 181 739-928 136-322 (545)
244 KOG4497 Uncharacterized conser 98.7 6.7E-07 1.5E-11 95.5 19.1 261 655-928 14-390 (447)
245 KOG1409 Uncharacterized conser 98.7 6.2E-07 1.3E-11 96.5 18.6 240 646-891 21-271 (404)
246 PRK04792 tolB translocation pr 98.7 4.5E-06 9.7E-11 98.1 27.7 229 670-911 199-446 (448)
247 PF08662 eIF2A: Eukaryotic tra 98.7 1.1E-06 2.4E-11 91.3 20.0 115 773-899 61-187 (194)
248 PF02239 Cytochrom_D1: Cytochr 98.7 8.6E-06 1.9E-10 93.1 27.8 245 653-901 40-358 (369)
249 PRK05137 tolB translocation pr 98.7 3.1E-06 6.6E-11 99.2 24.6 209 647-870 199-432 (435)
250 PRK02889 tolB translocation pr 98.7 1.7E-06 3.6E-11 101.1 21.5 210 647-870 193-424 (427)
251 KOG4547 WD40 repeat-containing 98.6 2.4E-06 5.2E-11 97.8 21.6 219 660-926 6-267 (541)
252 KOG0974 WD-repeat protein WDR6 98.6 1.5E-07 3.3E-12 113.1 12.6 138 661-800 147-289 (967)
253 PF08662 eIF2A: Eukaryotic tra 98.6 1.9E-06 4.1E-11 89.6 18.6 108 817-928 59-178 (194)
254 KOG0280 Uncharacterized conser 98.6 4.8E-07 1E-11 95.6 14.0 150 653-802 125-287 (339)
255 KOG1064 RAVE (regulator of V-A 98.6 1.5E-07 3.2E-12 117.6 11.3 222 648-922 2207-2439(2439)
256 TIGR02800 propeller_TolB tol-p 98.6 6.5E-06 1.4E-10 95.4 24.4 204 647-900 187-406 (417)
257 PRK11138 outer membrane biogen 98.6 2.5E-05 5.5E-10 90.2 28.7 256 655-928 116-393 (394)
258 KOG2394 WD40 protein DMR-N9 [G 98.6 1.4E-06 3E-11 98.4 16.7 188 661-870 187-384 (636)
259 PRK01029 tolB translocation pr 98.6 2.6E-05 5.6E-10 91.1 28.0 233 669-910 165-423 (428)
260 KOG1409 Uncharacterized conser 98.6 3.4E-06 7.4E-11 90.9 18.2 238 680-928 13-269 (404)
261 KOG4190 Uncharacterized conser 98.5 2.9E-07 6.3E-12 103.1 10.5 239 644-926 730-985 (1034)
262 COG2706 3-carboxymuconate cycl 98.5 0.00036 7.9E-09 76.5 31.1 257 668-927 15-319 (346)
263 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00019 4.1E-09 81.0 29.6 222 667-899 75-339 (352)
264 PLN02919 haloacid dehalogenase 98.4 0.00016 3.6E-09 93.0 32.3 109 820-928 742-887 (1057)
265 PRK00178 tolB translocation pr 98.4 5.1E-05 1.1E-09 88.6 24.6 212 647-870 196-427 (430)
266 KOG2315 Predicted translation 98.4 2E-05 4.4E-10 89.9 19.9 229 653-896 129-395 (566)
267 COG5354 Uncharacterized protei 98.4 5.3E-05 1.1E-09 85.6 22.8 265 648-928 31-394 (561)
268 PRK04792 tolB translocation pr 98.3 4.9E-05 1.1E-09 89.4 23.1 212 647-870 215-446 (448)
269 KOG0309 Conserved WD40 repeat- 98.3 3.5E-06 7.6E-11 97.8 12.4 270 649-928 24-338 (1081)
270 COG2706 3-carboxymuconate cycl 98.3 0.0015 3.2E-08 71.9 30.9 248 647-894 37-327 (346)
271 KOG4190 Uncharacterized conser 98.3 9.3E-07 2E-11 99.2 6.5 206 683-927 727-946 (1034)
272 PF13360 PQQ_2: PQQ-like domai 98.3 0.00032 6.8E-09 74.5 25.5 216 667-897 1-237 (238)
273 KOG0882 Cyclophilin-related pe 98.3 2.7E-05 5.8E-10 86.6 17.3 251 647-899 7-314 (558)
274 KOG0309 Conserved WD40 repeat- 98.3 2E-06 4.2E-11 99.9 8.1 118 645-763 110-233 (1081)
275 PF13360 PQQ_2: PQQ-like domai 98.2 0.00051 1.1E-08 72.8 25.9 212 711-928 1-229 (238)
276 KOG4714 Nucleoporin [Nuclear s 98.2 1.4E-05 2.9E-10 83.6 12.9 184 738-928 95-317 (319)
277 PF00400 WD40: WD domain, G-be 98.2 3.9E-06 8.4E-11 63.1 6.8 38 682-719 2-39 (39)
278 PF04762 IKI3: IKI3 family; I 98.2 0.00037 8.1E-09 88.3 27.9 262 648-927 74-377 (928)
279 PRK11138 outer membrane biogen 98.2 0.00054 1.2E-08 79.2 26.9 260 656-928 66-352 (394)
280 COG4946 Uncharacterized protei 98.2 0.001 2.2E-08 74.8 26.4 189 698-896 273-483 (668)
281 KOG2314 Translation initiation 98.2 0.00026 5.7E-09 80.7 22.0 257 652-922 213-560 (698)
282 KOG4532 WD40-like repeat conta 98.1 0.00022 4.9E-09 74.9 19.9 228 659-890 84-331 (344)
283 KOG2066 Vacuolar assembly/sort 98.1 8.1E-05 1.8E-09 88.2 17.8 183 649-848 39-233 (846)
284 COG4946 Uncharacterized protei 98.1 0.00099 2.2E-08 74.8 25.0 113 647-763 357-478 (668)
285 PF15492 Nbas_N: Neuroblastoma 98.1 0.00078 1.7E-08 72.0 23.4 223 659-901 8-270 (282)
286 KOG2695 WD40 repeat protein [G 98.1 9.9E-06 2.1E-10 87.4 8.5 166 742-911 223-402 (425)
287 KOG0280 Uncharacterized conser 98.1 0.00037 7.9E-09 74.3 20.0 125 782-910 134-262 (339)
288 PF00400 WD40: WD domain, G-be 98.0 1.1E-05 2.3E-10 60.7 5.9 38 851-888 2-39 (39)
289 KOG3914 WD repeat protein WDR4 98.0 3.7E-05 8.1E-10 84.8 12.3 90 838-928 130-222 (390)
290 PRK01029 tolB translocation pr 98.0 0.0011 2.3E-08 77.7 25.0 211 713-928 165-402 (428)
291 PLN02919 haloacid dehalogenase 98.0 0.00098 2.1E-08 86.0 26.1 216 651-894 625-892 (1057)
292 PRK04043 tolB translocation pr 98.0 0.0035 7.6E-08 73.1 28.3 208 669-891 169-401 (419)
293 KOG2041 WD40 repeat protein [G 98.0 0.00023 5E-09 82.9 17.7 234 645-888 67-335 (1189)
294 KOG1920 IkappaB kinase complex 98.0 0.0019 4.1E-08 80.0 26.3 229 649-894 68-326 (1265)
295 KOG3914 WD repeat protein WDR4 98.0 9.2E-05 2E-09 81.7 13.3 85 813-899 147-232 (390)
296 KOG1354 Serine/threonine prote 97.9 0.00021 4.6E-09 77.3 14.9 73 818-892 273-361 (433)
297 KOG2114 Vacuolar assembly/sort 97.9 0.0026 5.6E-08 76.4 24.8 217 651-901 27-255 (933)
298 PF00780 CNH: CNH domain; Int 97.9 0.01 2.2E-07 64.9 28.3 229 659-901 7-266 (275)
299 PF08450 SGL: SMP-30/Gluconola 97.9 0.01 2.2E-07 63.8 27.6 202 696-910 4-233 (246)
300 PLN03200 cellulose synthase-in 97.9 0.0006 1.3E-08 90.4 20.5 304 132-456 423-767 (2102)
301 PF04762 IKI3: IKI3 family; I 97.8 0.0056 1.2E-07 77.8 28.6 268 650-927 22-331 (928)
302 KOG4714 Nucleoporin [Nuclear s 97.8 0.00021 4.4E-09 75.0 12.4 188 652-850 39-256 (319)
303 KOG1912 WD40 repeat protein [G 97.8 0.0026 5.6E-08 75.3 21.9 83 647-731 53-153 (1062)
304 KOG1645 RING-finger-containing 97.7 0.0012 2.5E-08 73.2 17.2 78 644-724 188-269 (463)
305 KOG1832 HIV-1 Vpr-binding prot 97.7 1.6E-05 3.5E-10 94.0 3.0 198 683-899 1093-1300(1516)
306 KOG4532 WD40-like repeat conta 97.7 0.0036 7.8E-08 66.1 19.8 220 668-899 51-291 (344)
307 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.04 8.8E-07 58.3 26.7 262 651-928 54-350 (354)
308 PF08450 SGL: SMP-30/Gluconola 97.7 0.067 1.5E-06 57.4 30.1 213 654-877 4-242 (246)
309 PF07433 DUF1513: Protein of u 97.6 0.033 7.2E-07 61.3 26.7 219 694-919 7-276 (305)
310 KOG2066 Vacuolar assembly/sort 97.6 0.0018 3.8E-08 77.3 17.9 137 659-800 83-234 (846)
311 PLN03200 cellulose synthase-in 97.6 0.0061 1.3E-07 81.3 23.2 244 99-362 4-262 (2102)
312 cd00216 PQQ_DH Dehydrogenases 97.6 0.028 6E-07 67.0 27.2 238 656-906 106-440 (488)
313 COG5354 Uncharacterized protei 97.5 0.023 5.1E-07 64.9 24.2 223 654-891 136-396 (561)
314 KOG1275 PAB-dependent poly(A) 97.5 0.0018 4E-08 77.8 16.3 190 659-888 147-340 (1118)
315 KOG3621 WD40 repeat-containing 97.5 0.01 2.3E-07 70.1 22.1 267 651-927 37-351 (726)
316 PF07433 DUF1513: Protein of u 97.5 0.026 5.7E-07 62.0 23.6 206 672-883 31-278 (305)
317 KOG1912 WD40 repeat protein [G 97.5 0.0061 1.3E-07 72.3 19.1 251 650-927 16-302 (1062)
318 KOG0882 Cyclophilin-related pe 97.4 0.0019 4.1E-08 72.3 14.0 204 689-899 7-240 (558)
319 PRK04043 tolB translocation pr 97.4 0.047 1E-06 63.8 25.0 150 651-804 189-362 (419)
320 COG5170 CDC55 Serine/threonine 97.3 0.0027 5.9E-08 68.0 12.9 232 691-928 26-308 (460)
321 cd00216 PQQ_DH Dehydrogenases 97.3 0.083 1.8E-06 63.0 27.1 265 657-928 59-423 (488)
322 KOG1920 IkappaB kinase complex 97.3 0.021 4.6E-07 71.1 21.1 233 691-927 68-320 (1265)
323 KOG2695 WD40 repeat protein [G 97.2 0.00062 1.4E-08 73.9 7.1 136 784-928 227-375 (425)
324 KOG3617 WD40 and TPR repeat-co 97.2 0.012 2.6E-07 70.3 17.8 69 651-721 61-131 (1416)
325 KOG1275 PAB-dependent poly(A) 97.2 0.0021 4.6E-08 77.3 11.8 144 650-797 178-340 (1118)
326 PF06433 Me-amine-dh_H: Methyl 97.2 0.21 4.5E-06 55.9 26.4 249 669-928 17-319 (342)
327 PF08596 Lgl_C: Lethal giant l 97.2 0.19 4.1E-06 58.1 27.4 249 651-919 3-326 (395)
328 PF08553 VID27: VID27 cytoplas 97.2 0.044 9.6E-07 67.7 23.2 137 703-847 493-646 (794)
329 PF04841 Vps16_N: Vps16, N-ter 97.1 0.2 4.3E-06 58.4 27.2 53 860-912 216-270 (410)
330 PF15492 Nbas_N: Neuroblastoma 97.1 0.071 1.5E-06 57.4 21.2 217 697-928 3-258 (282)
331 PF03178 CPSF_A: CPSF A subuni 97.1 0.15 3.3E-06 57.1 25.6 209 669-926 2-262 (321)
332 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.25 5.4E-06 52.6 24.0 138 660-801 24-167 (354)
333 PF11768 DUF3312: Protein of u 97.1 0.006 1.3E-07 71.1 13.4 74 647-724 257-332 (545)
334 KOG2114 Vacuolar assembly/sort 97.1 0.031 6.7E-07 67.5 19.4 190 736-927 27-241 (933)
335 KOG2314 Translation initiation 97.0 0.053 1.2E-06 62.6 19.8 236 671-916 192-462 (698)
336 PF11768 DUF3312: Protein of u 96.9 0.17 3.7E-06 59.4 23.6 72 817-891 259-330 (545)
337 KOG1832 HIV-1 Vpr-binding prot 96.8 0.00077 1.7E-08 80.3 3.5 208 645-876 1097-1317(1516)
338 smart00320 WD40 WD40 repeats. 96.8 0.0036 7.7E-08 44.2 5.6 37 683-719 4-40 (40)
339 PRK02888 nitrous-oxide reducta 96.7 0.24 5.3E-06 59.4 22.6 241 661-918 143-450 (635)
340 PF04053 Coatomer_WDAD: Coatom 96.7 0.27 5.9E-06 57.6 22.9 220 685-927 26-260 (443)
341 KOG1645 RING-finger-containing 96.6 0.0043 9.2E-08 68.9 7.1 87 842-928 175-265 (463)
342 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.085 1.9E-06 49.4 14.5 97 694-794 2-109 (111)
343 KOG1008 Uncharacterized conser 96.5 0.0011 2.5E-08 77.0 1.9 200 649-848 56-275 (783)
344 PF06433 Me-amine-dh_H: Methyl 96.5 0.81 1.7E-05 51.3 23.9 228 668-901 66-331 (342)
345 PF04053 Coatomer_WDAD: Coatom 96.5 0.31 6.8E-06 57.2 22.0 167 739-925 39-219 (443)
346 smart00320 WD40 WD40 repeats. 96.5 0.0064 1.4E-07 42.8 5.1 37 852-888 4-40 (40)
347 KOG3617 WD40 and TPR repeat-co 95.9 0.13 2.8E-06 62.0 14.7 97 661-762 29-131 (1416)
348 PF03178 CPSF_A: CPSF A subuni 95.9 0.58 1.3E-05 52.5 19.5 128 669-800 62-203 (321)
349 PHA02713 hypothetical protein; 95.8 0.55 1.2E-05 57.0 20.3 224 669-901 272-544 (557)
350 PF05804 KAP: Kinesin-associat 95.8 0.46 9.9E-06 58.6 19.1 335 167-544 260-608 (708)
351 PHA02713 hypothetical protein; 95.7 0.56 1.2E-05 56.9 19.7 210 714-928 273-532 (557)
352 KOG3621 WD40 repeat-containing 95.6 0.089 1.9E-06 62.5 11.9 111 690-800 32-155 (726)
353 KOG4441 Proteins containing BT 95.6 0.72 1.6E-05 56.1 20.1 223 661-893 287-549 (571)
354 COG3386 Gluconolactonase [Carb 95.6 2.3 5.1E-05 47.5 22.6 203 698-911 31-264 (307)
355 KOG4640 Anaphase-promoting com 95.6 0.055 1.2E-06 63.6 9.7 73 650-725 21-96 (665)
356 PF00930 DPPIV_N: Dipeptidyl p 95.6 0.88 1.9E-05 51.9 19.6 238 668-919 22-301 (353)
357 PF14783 BBS2_Mid: Ciliary BBS 95.5 0.51 1.1E-05 44.3 14.0 96 652-757 2-109 (111)
358 PF00780 CNH: CNH domain; Int 95.5 4.5 9.9E-05 43.9 24.3 211 701-928 5-254 (275)
359 KOG4441 Proteins containing BT 95.4 1.1 2.3E-05 54.6 20.7 211 713-928 301-545 (571)
360 KOG2395 Protein involved in va 95.4 0.34 7.4E-06 56.1 15.0 138 702-847 344-499 (644)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 4.8 0.0001 48.6 26.0 71 655-728 116-196 (527)
362 PRK02888 nitrous-oxide reducta 95.3 2.2 4.7E-05 51.6 22.1 90 839-928 295-403 (635)
363 COG3490 Uncharacterized protei 95.3 1.4 3E-05 47.8 18.4 185 698-888 120-346 (366)
364 KOG1897 Damage-specific DNA bi 95.2 11 0.00025 47.2 27.5 274 647-927 528-854 (1096)
365 PF04841 Vps16_N: Vps16, N-ter 95.1 8.9 0.00019 44.8 29.1 186 670-873 62-272 (410)
366 KOG4640 Anaphase-promoting com 95.1 0.11 2.3E-06 61.2 10.1 91 818-910 21-114 (665)
367 PF06977 SdiA-regulated: SdiA- 95.1 6.3 0.00014 42.7 25.6 200 685-887 15-247 (248)
368 PF05096 Glu_cyclase_2: Glutam 94.9 7 0.00015 42.5 24.6 181 693-878 46-249 (264)
369 COG0823 TolB Periplasmic compo 94.9 1.6 3.5E-05 51.0 19.4 170 687-899 188-367 (425)
370 KOG2079 Vacuolar assembly/sort 94.9 0.31 6.8E-06 60.6 13.6 108 649-760 89-201 (1206)
371 PF08596 Lgl_C: Lethal giant l 94.9 2 4.3E-05 49.8 19.8 202 648-879 85-325 (395)
372 PRK13616 lipoprotein LpqB; Pro 94.8 3.4 7.4E-05 50.5 22.3 196 689-925 347-564 (591)
373 KOG2444 WD40 repeat protein [G 94.7 0.052 1.1E-06 56.7 5.6 140 746-891 32-178 (238)
374 COG0823 TolB Periplasmic compo 94.6 1.2 2.6E-05 52.1 17.5 82 669-753 218-302 (425)
375 COG3391 Uncharacterized conser 94.5 12 0.00025 43.3 25.3 206 694-901 76-294 (381)
376 PF08553 VID27: VID27 cytoplas 93.8 0.71 1.5E-05 57.4 13.8 105 781-889 542-646 (794)
377 COG3490 Uncharacterized protei 93.8 12 0.00027 40.7 21.5 260 649-926 34-345 (366)
378 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 4.4 9.5E-05 48.9 20.2 193 703-895 69-338 (527)
379 KOG2160 Armadillo/beta-catenin 93.6 1.1 2.5E-05 50.0 13.7 187 260-459 100-288 (342)
380 COG3391 Uncharacterized conser 93.4 18 0.0004 41.7 25.4 210 654-871 78-309 (381)
381 KOG1008 Uncharacterized conser 93.3 0.023 5.1E-07 66.5 0.0 152 646-800 99-276 (783)
382 PHA03098 kelch-like protein; P 93.0 4.2 9.1E-05 49.0 18.8 186 702-894 294-515 (534)
383 PHA03098 kelch-like protein; P 92.9 6 0.00013 47.6 19.8 146 659-806 295-471 (534)
384 KOG2395 Protein involved in va 92.9 1.2 2.7E-05 51.8 12.6 136 661-799 348-500 (644)
385 PRK13800 putative oxidoreducta 92.7 4 8.6E-05 52.6 18.8 249 156-449 622-895 (897)
386 KOG2079 Vacuolar assembly/sort 92.5 0.37 8.1E-06 59.9 8.6 88 838-927 107-201 (1206)
387 COG3386 Gluconolactonase [Carb 92.5 18 0.0004 40.4 21.4 211 661-879 39-274 (307)
388 PF05804 KAP: Kinesin-associat 92.4 0.78 1.7E-05 56.6 11.3 302 275-591 275-609 (708)
389 PF02897 Peptidase_S9_N: Proly 92.1 28 0.0006 40.4 29.1 235 654-894 128-408 (414)
390 TIGR03074 PQQ_membr_DH membran 91.9 16 0.00035 46.0 21.9 197 703-899 194-486 (764)
391 KOG4499 Ca2+-binding protein R 91.8 20 0.00043 38.2 19.3 206 659-870 27-263 (310)
392 COG5276 Uncharacterized conser 91.8 23 0.00051 38.9 28.0 151 649-801 86-243 (370)
393 cd00020 ARM Armadillo/beta-cat 91.7 1 2.2E-05 41.7 8.9 118 228-360 2-119 (120)
394 PF12894 Apc4_WD40: Anaphase-p 91.7 0.42 9E-06 37.8 5.1 35 860-895 11-45 (47)
395 PF02897 Peptidase_S9_N: Proly 91.4 33 0.00071 39.8 28.7 214 693-909 125-378 (414)
396 PF01602 Adaptin_N: Adaptin N 91.4 2.6 5.7E-05 50.4 14.2 179 154-363 113-298 (526)
397 KOG2171 Karyopherin (importin) 91.4 7.6 0.00016 49.4 18.0 274 154-451 117-459 (1075)
398 PF12894 Apc4_WD40: Anaphase-p 90.9 0.68 1.5E-05 36.6 5.6 34 690-724 10-43 (47)
399 PHA02790 Kelch-like protein; P 89.6 15 0.00032 43.8 18.3 181 703-893 272-473 (480)
400 PF14583 Pectate_lyase22: Olig 89.5 45 0.00098 38.3 25.0 214 698-920 42-303 (386)
401 PHA02790 Kelch-like protein; P 89.3 14 0.0003 44.0 17.7 144 659-806 272-430 (480)
402 KOG2444 WD40 repeat protein [G 89.0 0.97 2.1E-05 47.5 6.6 95 659-761 70-165 (238)
403 KOG2280 Vacuolar assembly/sort 89.0 25 0.00055 43.0 18.9 182 712-899 63-255 (829)
404 PF14727 PHTB1_N: PTHB1 N-term 88.7 55 0.0012 38.3 29.4 258 660-925 38-356 (418)
405 PF10508 Proteasom_PSMB: Prote 88.7 11 0.00025 45.1 16.4 207 230-463 116-327 (503)
406 COG3292 Predicted periplasmic 88.2 19 0.00042 42.8 16.8 263 649-925 164-443 (671)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 88.1 60 0.0013 38.0 21.5 73 856-928 303-397 (415)
408 PF12234 Rav1p_C: RAVE protein 88.0 10 0.00022 46.3 15.3 105 821-927 33-154 (631)
409 COG3823 Glutamine cyclotransfe 87.7 23 0.0005 37.1 15.2 169 702-878 55-247 (262)
410 cd00020 ARM Armadillo/beta-cat 86.1 5.8 0.00013 36.5 9.6 78 286-363 3-80 (120)
411 PF14761 HPS3_N: Hermansky-Pud 84.6 58 0.0013 34.4 17.4 57 653-710 21-78 (215)
412 COG3204 Uncharacterized protei 84.2 73 0.0016 35.3 21.0 165 687-851 81-266 (316)
413 PF12234 Rav1p_C: RAVE protein 84.1 22 0.00049 43.4 15.5 106 693-799 31-156 (631)
414 PF05096 Glu_cyclase_2: Glutam 82.9 20 0.00044 39.0 13.0 109 819-928 46-156 (264)
415 COG5276 Uncharacterized conser 82.3 86 0.0019 34.7 24.5 149 650-800 129-286 (370)
416 PF01602 Adaptin_N: Adaptin N 81.9 59 0.0013 38.8 18.3 215 103-361 108-333 (526)
417 PF07569 Hira: TUP1-like enhan 80.5 17 0.00036 38.7 11.4 74 651-725 14-99 (219)
418 KOG4499 Ca2+-binding protein R 80.1 90 0.0019 33.5 19.2 48 865-912 216-264 (310)
419 cd00256 VATPase_H VATPase_H, r 79.7 18 0.00039 42.3 12.1 244 152-451 140-423 (429)
420 smart00036 CNH Domain found in 79.7 1.1E+02 0.0023 34.2 29.9 229 661-900 15-280 (302)
421 KOG0166 Karyopherin (importin) 79.3 24 0.00053 41.9 13.0 249 91-397 219-472 (514)
422 COG1520 FOG: WD40-like repeat 78.1 1.3E+02 0.0029 34.3 28.6 143 657-803 66-221 (370)
423 KOG3036 Protein involved in ce 77.9 4.8 0.0001 43.0 6.0 136 155-333 123-287 (293)
424 PF15390 DUF4613: Domain of un 77.4 1.1E+02 0.0024 36.9 17.4 142 650-800 20-187 (671)
425 KOG2063 Vacuolar assembly/sort 77.2 51 0.0011 41.9 15.6 70 654-724 21-99 (877)
426 KOG4224 Armadillo repeat prote 77.0 15 0.00032 41.3 9.7 165 281-458 199-368 (550)
427 PF15390 DUF4613: Domain of un 76.9 1.1E+02 0.0023 37.1 17.0 141 647-788 54-220 (671)
428 PRK09687 putative lyase; Provi 76.9 49 0.0011 36.6 14.1 69 378-452 51-119 (280)
429 PF10508 Proteasom_PSMB: Prote 76.5 63 0.0014 38.8 16.0 133 216-364 60-192 (503)
430 KOG1983 Tomosyn and related SN 76.3 36 0.00077 44.3 14.5 215 653-894 39-268 (993)
431 KOG1062 Vesicle coat complex A 76.1 2.2E+02 0.0047 35.7 21.3 319 99-458 132-549 (866)
432 KOG1916 Nuclear protein, conta 76.1 3.5 7.6E-05 50.8 5.0 59 660-721 196-265 (1283)
433 PF13646 HEAT_2: HEAT repeats; 75.4 18 0.00039 31.6 8.5 85 335-448 2-87 (88)
434 PF10313 DUF2415: Uncharacteri 73.8 9.4 0.0002 29.7 5.1 32 692-723 1-35 (43)
435 PF04826 Arm_2: Armadillo-like 73.7 1E+02 0.0022 33.6 15.2 185 153-357 10-201 (254)
436 KOG1900 Nuclear pore complex, 73.5 20 0.00043 46.5 10.8 155 710-891 96-273 (1311)
437 PRK09687 putative lyase; Provi 72.6 1.1E+02 0.0023 33.9 15.3 95 422-524 158-262 (280)
438 KOG1916 Nuclear protein, conta 71.8 4 8.6E-05 50.4 4.1 94 834-928 199-322 (1283)
439 TIGR03074 PQQ_membr_DH membran 70.0 3.1E+02 0.0067 34.9 20.8 70 659-731 260-354 (764)
440 TIGR03548 mutarot_permut cycli 69.9 1.9E+02 0.0041 32.3 17.8 107 656-763 70-195 (323)
441 PF08801 Nucleoporin_N: Nup133 69.7 1.8E+02 0.0039 33.9 17.4 32 861-892 190-221 (422)
442 PF14781 BBS2_N: Ciliary BBSom 69.6 78 0.0017 31.0 11.6 103 697-800 4-126 (136)
443 PF11715 Nup160: Nucleoporin N 68.8 30 0.00065 41.9 11.0 71 658-728 157-255 (547)
444 KOG2280 Vacuolar assembly/sort 68.7 3.1E+02 0.0066 34.3 20.2 69 649-722 43-113 (829)
445 PF14870 PSII_BNR: Photosynthe 68.3 2.1E+02 0.0045 32.1 28.7 228 651-887 63-301 (302)
446 PF05536 Neurochondrin: Neuroc 68.2 1.4E+02 0.003 36.3 16.2 271 150-454 135-453 (543)
447 PF13646 HEAT_2: HEAT repeats; 67.4 31 0.00066 30.1 8.1 68 385-471 3-71 (88)
448 PF07569 Hira: TUP1-like enhan 66.4 41 0.00089 35.7 10.1 35 817-853 66-100 (219)
449 TIGR02276 beta_rpt_yvtn 40-res 66.4 25 0.00055 26.0 6.3 40 870-909 1-41 (42)
450 PF05004 IFRD: Interferon-rela 66.1 47 0.001 37.2 11.0 150 289-451 85-255 (309)
451 PLN00033 photosystem II stabil 66.0 2.6E+02 0.0057 32.5 26.3 139 742-887 248-396 (398)
452 KOG4224 Armadillo repeat prote 65.5 82 0.0018 35.7 12.1 135 164-315 216-359 (550)
453 PRK13616 lipoprotein LpqB; Pro 65.1 3.4E+02 0.0073 33.4 21.2 57 650-711 350-416 (591)
454 COG4590 ABC-type uncharacteriz 64.5 36 0.00079 39.4 9.4 150 740-894 228-390 (733)
455 PF14870 PSII_BNR: Photosynthe 63.8 2.5E+02 0.0054 31.5 28.0 223 690-925 15-257 (302)
456 PLN02153 epithiospecifier prot 63.8 2E+02 0.0043 32.4 15.7 71 655-726 82-172 (341)
457 PF14583 Pectate_lyase22: Olig 62.8 2.9E+02 0.0064 31.9 27.3 65 661-728 50-117 (386)
458 PF08728 CRT10: CRT10; InterP 62.6 1.5E+02 0.0034 36.9 15.0 115 772-889 101-245 (717)
459 PRK13684 Ycf48-like protein; P 62.2 2.7E+02 0.006 31.4 24.6 105 817-924 172-283 (334)
460 PF10313 DUF2415: Uncharacteri 61.4 22 0.00048 27.7 4.9 31 861-891 1-34 (43)
461 PF10647 Gmad1: Lipoprotein Lp 61.1 2.4E+02 0.0053 30.5 19.5 181 739-924 30-232 (253)
462 KOG1048 Neural adherens juncti 61.1 56 0.0012 40.4 10.9 155 149-315 512-679 (717)
463 KOG3630 Nuclear pore complex, 60.3 45 0.00097 42.8 9.9 91 821-912 159-254 (1405)
464 PRK13684 Ycf48-like protein; P 59.9 3E+02 0.0065 31.1 31.2 146 772-927 173-329 (334)
465 PF06977 SdiA-regulated: SdiA- 59.5 2.6E+02 0.0057 30.3 23.3 192 733-926 20-247 (248)
466 PF10433 MMS1_N: Mono-function 58.6 3.9E+02 0.0084 32.0 25.6 242 659-909 222-501 (504)
467 PF08569 Mo25: Mo25-like; Int 58.2 2.4E+02 0.0051 32.1 14.7 191 101-371 10-203 (335)
468 COG5167 VID27 Protein involved 57.7 1.4E+02 0.0031 35.3 12.7 138 701-847 477-631 (776)
469 PF00930 DPPIV_N: Dipeptidyl p 57.6 3.3E+02 0.0071 30.9 18.8 56 671-726 160-223 (353)
470 PF10647 Gmad1: Lipoprotein Lp 57.5 2.8E+02 0.006 30.0 21.1 156 693-850 25-199 (253)
471 PLN02193 nitrile-specifier pro 57.3 4E+02 0.0086 31.7 20.3 55 840-894 343-414 (470)
472 TIGR02604 Piru_Ver_Nterm putat 57.1 2.6E+02 0.0057 31.9 15.4 96 818-918 72-202 (367)
473 PF12768 Rax2: Cortical protei 57.0 74 0.0016 35.2 10.2 78 669-748 16-105 (281)
474 PF10395 Utp8: Utp8 family; I 56.9 4.7E+02 0.01 32.5 21.8 160 691-856 129-313 (670)
475 PLN02153 epithiospecifier prot 56.8 3.3E+02 0.0071 30.6 22.7 66 659-726 33-114 (341)
476 PRK14131 N-acetylneuraminic ac 56.4 3.6E+02 0.0077 30.9 21.2 52 869-920 277-353 (376)
477 COG1520 FOG: WD40-like repeat 55.8 3.6E+02 0.0077 30.7 23.1 192 705-901 70-279 (370)
478 PF07995 GSDH: Glucose / Sorbo 55.1 1.6E+02 0.0035 33.2 13.0 111 772-883 2-136 (331)
479 KOG0946 ER-Golgi vesicle-tethe 55.0 65 0.0014 40.0 9.8 135 233-382 61-225 (970)
480 KOG3522 Predicted guanine nucl 55.0 20 0.00044 44.3 5.8 142 745-892 548-699 (925)
481 PF03224 V-ATPase_H_N: V-ATPas 54.5 1.3E+02 0.0029 33.5 12.1 132 156-299 56-200 (312)
482 PF04564 U-box: U-box domain; 53.4 1.5 3.3E-05 38.0 -2.9 57 170-227 11-69 (73)
483 PF05694 SBP56: 56kDa selenium 53.4 2.3E+02 0.005 33.3 13.6 97 667-763 220-343 (461)
484 cd00256 VATPase_H VATPase_H, r 53.1 80 0.0017 37.1 10.1 195 133-359 207-423 (429)
485 KOG2714 SETA binding protein S 53.1 2.1E+02 0.0045 33.3 12.9 231 662-928 197-458 (465)
486 PRK13800 putative oxidoreducta 52.7 5.9E+02 0.013 33.1 19.0 140 293-467 717-875 (897)
487 KOG1897 Damage-specific DNA bi 52.4 6.4E+02 0.014 32.6 30.5 235 649-894 353-619 (1096)
488 KOG1896 mRNA cleavage and poly 51.7 7.1E+02 0.015 33.0 20.5 137 661-800 1048-1214(1366)
489 PRK10115 protease 2; Provision 50.9 6E+02 0.013 31.9 22.3 196 694-926 129-341 (686)
490 COG5167 VID27 Protein involved 50.8 91 0.002 36.9 9.7 105 781-889 527-631 (776)
491 PF12768 Rax2: Cortical protei 50.4 1.3E+02 0.0027 33.4 10.7 69 840-909 16-96 (281)
492 KOG1983 Tomosyn and related SN 50.4 2.8E+02 0.0061 36.4 15.4 30 692-721 36-65 (993)
493 TIGR03118 PEPCTERM_chp_1 conse 50.4 4.1E+02 0.0089 29.8 19.9 57 871-928 211-278 (336)
494 TIGR03548 mutarot_permut cycli 50.1 4E+02 0.0087 29.6 21.5 104 702-805 72-200 (323)
495 KOG2377 Uncharacterized conser 50.0 5E+02 0.011 30.7 16.7 109 653-762 26-140 (657)
496 PF12341 DUF3639: Protein of u 49.5 34 0.00074 23.9 3.8 26 650-675 2-27 (27)
497 PF12348 CLASP_N: CLASP N term 48.6 1.1E+02 0.0025 32.0 9.9 118 233-371 94-216 (228)
498 TIGR03118 PEPCTERM_chp_1 conse 48.2 4.4E+02 0.0096 29.6 26.8 71 840-910 222-306 (336)
499 PF10168 Nup88: Nuclear pore c 47.6 1.4E+02 0.003 37.6 11.6 67 862-928 86-178 (717)
500 PF10168 Nup88: Nuclear pore c 47.0 7E+02 0.015 31.5 22.9 70 692-762 85-179 (717)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-37 Score=326.21 Aligned_cols=280 Identities=16% Similarity=0.267 Sum_probs=243.6
Q ss_pred ceeEEEEEeecCCCCCCEEEEEEeC--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 635 SCVHTQILEASHKCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 635 ~~~~t~~l~~~~gH~~~Vtsl~fs~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D 712 (929)
.|...+. ||.++|.|+.|++ ..|+||+.|.++|+||..+.. +.++.++|...|.|++|+|||+.|+||+.|
T Consensus 106 rCssS~~-----GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 106 RCSSSIA-----GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred eeccccC-----CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccC
Confidence 3555544 9999999999993 389999999999999999875 489999999999999999999999999999
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeEEec-------cCCCEEEEEecCCeEEEEeCCC--ceeeeccC-CCeEEEEEe-C
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIRKLD-------TYGKTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-Q 781 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~s~s-------~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-~~V~sla~s-d 781 (929)
|+|++||..+|++.-....+|+..|++++ +..+++++++.||.++|||+.. +...+.++ ..|+|+.|- +
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 99999999999988888889999999754 4567899999999999999984 55555554 569999998 8
Q ss_pred CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-----------ce--------------------
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-----------WL-------------------- 830 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-----------~i-------------------- 830 (929)
|.+++|+.|++|++|+...|... +.+++|...|+.++.+.+ +.
T Consensus 259 gliySgS~DrtIkvw~a~dG~~~------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKLC------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred ceEEecCCCceEEEEEccchhHH------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 89999999999999999887654 345778888888877632 11
Q ss_pred -----EEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CC
Q 002389 831 -----YSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SK 903 (929)
Q Consensus 831 -----~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~ 903 (929)
.+++++ ||.++.+|+.. ..+++..+.+|..-|+.+.||||++|+|++|.|..|++||-.+|+.+.+|.+| ..
T Consensus 333 ~~~~erlVSgs-Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~ 411 (480)
T KOG0271|consen 333 KDSGERLVSGS-DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA 411 (480)
T ss_pred ccCcceeEEec-CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce
Confidence 256655 89999999964 45578889999999999999999999999999999999999999999999999 66
Q ss_pred eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 904 ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 904 Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+.++|+ .+.|++|+.|.++++|++
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEe
Confidence 9999997 559999999999999985
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=299.54 Aligned_cols=334 Identities=17% Similarity=0.261 Sum_probs=264.9
Q ss_pred hhHHhhHHhHHhhcCCCcchhhhhhhhh-----------cccccccCcCceeeeccccchhhhhccccceeecccccccc
Q 002389 555 SACQILLDGVEQFLHPGLELEERLLACL-----------CIYNYASGKGMQKLIRSSEGVRESLRRLSNVTWMAEELHKA 623 (929)
Q Consensus 555 ~Ar~~Ll~eL~~~L~~~~~L~ervLAsL-----------sL~n~~~~~gl~~L~~~~e~vi~slr~~k~~~w~a~~~~kv 623 (929)
..|..|++++...++|...+|+|+|..+ |+||..-+. .++-.+ ...
T Consensus 151 n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnslds-------------vsll~D----------h~c 207 (519)
T KOG0293|consen 151 NERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-------------VSLLSD----------HFC 207 (519)
T ss_pred hhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccch-------------hhhhhh----------ccc
Confidence 4688999999999999999999999875 233321111 111111 111
Q ss_pred cceecCCCcccceeEEEEEeecCCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCC-CeeEEEEeccCCCcEEEEEEc
Q 002389 624 ADYYLPNISRISCVHTQILEASHKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLF 700 (929)
Q Consensus 624 ~~~~~~~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~-~~~~i~~l~gH~~~Vtslafs 700 (929)
+...+| ....++.+.|.++|+-+.|| + .+||||+.|.+..||++... ..+..+++.+|..+|..+.||
T Consensus 208 ~~~qip---------~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 208 GRLQIP---------SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred CcccCC---------chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC
Confidence 111222 22334455899999999999 3 49999999999999988643 345678899999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeeccC---CCeE
Q 002389 701 EPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRS---KGIK 775 (929)
Q Consensus 701 pdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~---~~V~ 775 (929)
||.++|++|+.|..+++||+.+|.+......++...+. +|.|+|..+++|+.|+++..||.++....-+.. ..|.
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH 358 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE
Confidence 99999999999999999999999876555555444444 588999999999999999999999766554443 3488
Q ss_pred EEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 002389 776 SMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 776 sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
+++.+ ||+ +++.+.|..|++++..+.....+ .....+|+++..+.++.+.+.. ..+..+++||+....++
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-------ise~~~its~~iS~d~k~~Lvn-L~~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGL-------ISEEQPITSFSISKDGKLALVN-LQDQEIHLWDLEENKLV 430 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhcc-------ccccCceeEEEEcCCCcEEEEE-cccCeeEEeecchhhHH
Confidence 99987 787 88889999999999987544322 2236899999999999987754 36789999999999889
Q ss_pred EEecCCCC--CeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc---CCEEEEEECCCcEEEe
Q 002389 854 SIAPEKGT--TIQAMAVV-EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA---NDIVLCGTETGLIKGW 926 (929)
Q Consensus 854 ~~l~~h~~--~V~slafS-pdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d---g~~LaSgs~DG~I~IW 926 (929)
..+.||.. .|..-+|. .+..++++||+|+.|+||+..+|+++..+.||.. |++++|+ +.++|+||+||+|+||
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 99999976 44555665 4679999999999999999999999999999976 9999998 4599999999999999
Q ss_pred ec
Q 002389 927 IP 928 (929)
Q Consensus 927 di 928 (929)
.+
T Consensus 511 g~ 512 (519)
T KOG0293|consen 511 GP 512 (519)
T ss_pred cC
Confidence 75
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=297.20 Aligned_cols=274 Identities=17% Similarity=0.236 Sum_probs=236.1
Q ss_pred CCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEE
Q 002389 646 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-----PGESLLSGSADKTIGVW 718 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp-----dg~~LaSgs~DgtIrIW 718 (929)
.||...|.|++|+ |+ .||+|+.||+|++||.++++. ....+.+|...|++++|.| ..++|+|++.||+|+||
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 3999999999999 44 899999999999999999874 4678999999999999975 56789999999999999
Q ss_pred EccCCeEEEEEEeccCCCeEEeccC-CCEEEEEecCCeEEEEeCCC--ceeeeccC-CCeEEEEEe-------------C
Q 002389 719 QMVQRKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-------------Q 781 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-~~V~sla~s-------------d 781 (929)
|+..+++ .....+|..+|+|+.+. ..++++++.|++|++|+... ....+.++ +.|+.++.+ +
T Consensus 233 d~~~~~~-~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 233 DTKLGTC-VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred EccCceE-EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccc
Confidence 9988764 34566899999999877 45899999999999999874 44444443 346655543 1
Q ss_pred -------------------------CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 782 -------------------------GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 782 -------------------------g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
.++++|+.|.++.+|+..... .|.....+|...|+.+.++|++.++++.|
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEee
Confidence 138999999999999976532 23345678999999999999999999888
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEE--cCCE
Q 002389 837 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLT--ANDI 913 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~--dg~~ 913 (929)
-|+.|++||.++|+.+..+.||-+.|+.++|+.|.+.|++||.|.++++|++++.+....+.+|. .|.++.| ||..
T Consensus 387 -FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 387 -FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred -cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 56899999999999999999999999999999999999999999999999999999999999995 4998776 5889
Q ss_pred EEEEECCCcEEEee
Q 002389 914 VLCGTETGLIKGWI 927 (929)
Q Consensus 914 LaSgs~DG~I~IWd 927 (929)
+++|+.|..+++|.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 99999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-33 Score=298.82 Aligned_cols=272 Identities=17% Similarity=0.236 Sum_probs=238.2
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEccC
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl~t 722 (929)
|-+++|..+.|+ +..|+|||.+|.+++|+..+. ..+++|.||.+.|.++.|+|. +..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 568999999999 448999999999999999877 458999999999999999997 45799999999999999987
Q ss_pred CeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeee--c-cCCCeEEEEEe-CCE-EEEEECCCcEEE
Q 002389 723 RKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDI--Y-RSKGIKSMSVV-QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l--~-~~~~V~sla~s-dg~-llsgs~Dg~I~i 795 (929)
.. ......+|...|. .|.|+|+++.+++.|.+-++||+......+ . +..+|.+++|. ||. +++|+.|..-++
T Consensus 251 e~-~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 251 ET-PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred Cc-chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 54 3334456776665 588999999999999999999998433222 2 35679999998 888 556999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-CCCE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIY 874 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp-dg~~ 874 (929)
||+++|....+ +.+|.++|.++.++|++..+++++ .|++++|||++....+.++.+|.+-|+.+.|+| .|.+
T Consensus 330 WDlRtgr~im~------L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 330 WDLRTGRCIMF------LAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred eecccCcEEEE------ecccccceeeEeECCCceEEeecC-CCCcEEEeeecccccceecccccchhhheEecccCCeE
Confidence 99999987655 367999999999999999988877 788999999999999999999999999999999 7899
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEeec
Q 002389 875 LNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs--~dg~~LaSgs~DG~I~IWdi 928 (929)
|+|+|.|++++||...++++++++.+| ++|.++. ++++.|+|++.|+++++|.+
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 999999999999999999999999999 5588855 67889999999999999975
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=252.29 Aligned_cols=276 Identities=13% Similarity=0.159 Sum_probs=233.5
Q ss_pred eecCCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 643 EASHKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 643 ~~~~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
....||.+.|.++.|+ + .+|+++|.||.+.|||.-+... ++.++-....|..++|+|.|++++.||.|+...||++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 3455999999999999 3 3899999999999999988753 5666667789999999999999999999999999999
Q ss_pred cCC--e---EEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCCCc--eeeeccC-CCeEEEEEe--CCE-EEEEE
Q 002389 721 VQR--K---LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRT--LKDIYRS-KGIKSMSVV--QGK-IYIGC 788 (929)
Q Consensus 721 ~tg--~---~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~~-~~V~sla~s--dg~-llsgs 788 (929)
.+. + .......+|...+.+.. .+...|++++.|.+..+||++.. ...+.++ ..|.+++++ +++ +++|+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 854 1 23345668888888643 45789999999999999999943 3344444 348888886 444 99999
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC--CCCeEEE
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAM 866 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h--~~~V~sl 866 (929)
.|+..++||++.+... +.+.+|...|+++.++|++.-.+++| +|++.++||++....+..+... ..+|+++
T Consensus 207 cD~~aklWD~R~~~c~------qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCV------QTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred cccceeeeeccCccee------EeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 9999999999997554 45688999999999999999888777 9999999999998877766533 3489999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEee
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs--~dg~~LaSgs~DG~I~IWd 927 (929)
+||..|++|.+|..|.++.+||.-.++.+..+.+| ++|.++. +||..+++|++|.+++||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999 5698855 7789999999999999994
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=248.84 Aligned_cols=259 Identities=12% Similarity=0.194 Sum_probs=218.8
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-EEEEEeccCCCeEE
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-ELIEVIATKEPIRK 739 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~-~~~~~~~h~~~V~s 739 (929)
+|+|+|.|.+||+|...++.| ..+++...+.|+.+...|+++.|++|+ .-.||+||+++++. ......+|...|.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C--~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGIC--SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEeccCcceeeeeehhcCeE--EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 799999999999999999976 788887788999999999999999888 55799999998876 34445577777765
Q ss_pred --eccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceeccccccc
Q 002389 740 --LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 813 (929)
Q Consensus 740 --~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~ 813 (929)
|..+|+.+++|+.||+++|||++. +.+.+....+|+++..+ ++.+++|..+|.|++||+.+........
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li----- 163 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI----- 163 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-----
Confidence 778999999999999999999984 44556667889999997 5669999999999999998865433222
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 002389 814 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP------QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 887 (929)
Q Consensus 814 ~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~------~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IW 887 (929)
.....++.++..++++.++++.. +-|+.++|++-+.. ++..+..|.+.+..+.+|||+++|+++|.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 22367899999999999988876 56899999975543 456778899999999999999999999999999999
Q ss_pred ECCCC-cEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 888 LRGTQ-QKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 888 dl~sg-~~i~tl~~h~~-Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+.++. +.-..+++|.+ ++..+|+ |.+|++|+.|+.+++|++
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99888 55667788854 9998876 889999999999999986
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2e-27 Score=244.84 Aligned_cols=274 Identities=17% Similarity=0.239 Sum_probs=229.6
Q ss_pred cCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCe---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 645 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~---~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
..+|++.|+.++.. .+.+++++.|.++.+|++..... .+++.+.||...|..+..++||++.+|++.|+++++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 35999999999997 45899999999999999976543 2578899999999999999999999999999999999
Q ss_pred EccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC-ceeeecc---CCCeEEEEEeC----CEEEEEE
Q 002389 719 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR---SKGIKSMSVVQ----GKIYIGC 788 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~---~~~V~sla~sd----g~llsgs 788 (929)
|+.+|+ ....+.+|...|.+ |+++...+++|+.|.+|++|+.-+ +..++.. ...|.|+.|+. ..+++++
T Consensus 91 Dl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 91 DLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred EecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 999986 45566688888875 789999999999999999999874 3334433 34599999972 2388899
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf 868 (929)
.|+++++||+.+-+.. ..+.+|...++.+.++||+..+++++ .||.+.+||++.++.+..+ +|...|.+++|
T Consensus 170 ~DktvKvWnl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~~~k~lysl-~a~~~v~sl~f 241 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLNEGKNLYSL-EAFDIVNSLCF 241 (315)
T ss_pred CCceEEEEccCCcchh------hccccccccEEEEEECCCCCEEecCC-CCceEEEEEccCCceeEec-cCCCeEeeEEe
Confidence 9999999999985543 33467899999999999999999876 8899999999999887665 57789999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--------CCe--EEEEEc--CCEEEEEECCCcEEEeec
Q 002389 869 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------SKI--TSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--------~~V--tsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+|+...|+.+. +..|+|||+.++..+..+... +.+ .+++|+ |..|++|-.|+.|++|.+
T Consensus 242 spnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 242 SPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 99988877765 566999999999988777632 123 446676 999999999999999975
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=260.00 Aligned_cols=273 Identities=17% Similarity=0.234 Sum_probs=232.5
Q ss_pred CCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
||..+|+.+-|++. ..++++.|++|++||..+++. ...++||++.|.+++|+..|+++++++.|-.+++||..+..
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 79999999999976 678888999999999999975 78899999999999999999999999999999999998743
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeeccC-CCeEEEEEe-CCE-EEEEECCCcEEEEE
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQELA 797 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-~~V~sla~s-dg~-llsgs~Dg~I~iwD 797 (929)
..+....+|...|.+ |-|.|+++++++.|++|+.|+... +..++.++ ..|..+... ||. +++++.|.++++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 223344567777775 678999999999999999999884 56666664 458888888 888 55688999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCC---------------ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKD---------------WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT 862 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d---------------~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~ 862 (929)
+.+++.+. .+..|..++.++++-|. +.+.++.+ .|++|++||+.++.++.++.+|..+
T Consensus 264 ~~t~~~k~------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 264 VATKQCKA------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred eccchhhh------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEEEEeccCCeEEEEEecccce
Confidence 99875443 23567777777776543 13444444 7899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+.++|+|.|+||+|+.+|+++++||++++++..++..|.. |+++.|+ ..+++||+-|.++++|..
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999999999854 8999987 349999999999999974
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.7e-29 Score=265.14 Aligned_cols=267 Identities=16% Similarity=0.204 Sum_probs=227.0
Q ss_pred CCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 647 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 647 gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
.....|.|+.+.|+.+++|..|.+|+|||..+..+ ...+.||++.|.|+.| +.+.++|||.|.+|+|||+.+|++.
T Consensus 195 e~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c--~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC--LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ccCCceEEEEecchhhhcccccCceEEeccccHHH--HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 45789999999999999999999999999998765 7788999999999998 5568999999999999999999854
Q ss_pred EEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCce-----eeecc-CCCeEEEEEeCCEEEEEECCCcEEEEEccC
Q 002389 727 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL-----KDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSN 800 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~-----~~l~~-~~~V~sla~sdg~llsgs~Dg~I~iwDl~t 800 (929)
....+|.+.|..+.....++++++.|.++.+||+.... ..+.+ ...|+.+.|++..+++++.|.+|++|++.+
T Consensus 271 -~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 271 -NTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred -hHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc
Confidence 34457888999999999999999999999999998432 22233 345899999988999999999999999999
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~ 880 (929)
+... +...+|...|.++++. +.+.+++| .|.+|++||+..|.++..+.||..-|+++.| |.+.+++|+.
T Consensus 350 ~efv------Rtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY 418 (499)
T KOG0281|consen 350 CEFV------RTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 418 (499)
T ss_pred eeee------hhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence 6543 4557788888888764 34556665 6789999999999999999999999999999 4678999999
Q ss_pred CCcEEEEECCCCcE---------EEEEeCCC-CeEEEEEcCCEEEEEECCCcEEEeecC
Q 002389 881 ASSLQIWLRGTQQK---------VGRISAGS-KITSLLTANDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 881 DG~I~IWdl~sg~~---------i~tl~~h~-~Vtsvs~dg~~LaSgs~DG~I~IWdil 929 (929)
||+|+|||+..+.. +.++..|+ .|..+.||...|++++.|.+|-|||-+
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcC
Confidence 99999999877542 44555564 699999999999999999999999853
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=257.35 Aligned_cols=272 Identities=16% Similarity=0.212 Sum_probs=232.5
Q ss_pred ecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 644 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
+..||.++|.|+++. +.+++||+.|++|+|||+.+++. ..++.||...|..+++++-..|+++++.|+.|+.||+.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 345999999999999 44999999999999999999954 77899999999999999999999999999999999999
Q ss_pred CCeEEEEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe--CCEEEEEECCCcEE
Q 002389 722 QRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQ 794 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~ 794 (929)
..+. .....+|-..|.+++ |.-+.+++++.|.++++||++. ....+.+ ...|.++.+. |+++++|+.|++|+
T Consensus 224 ~nkv-IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKV-IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhh-HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 8774 344568889999876 5578999999999999999984 4445554 4568888886 99999999999999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCE
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 874 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~ 874 (929)
+||+..|+.... ...|...+.++..||.....++.+++ .|+-|++..+..++.+.+|...|++++...|| +
T Consensus 303 lWDl~agkt~~t------lt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 303 LWDLRAGKTMIT------LTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred EeeeccCceeEe------eecccceeeEEecCCchhhhhccCCc--cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 999998865433 35678899999999998888887755 59999999999998999999999999988776 6
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEe---CC------CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 875 LNYNSSASSLQIWLRGTQQKVGRIS---AG------SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~i~tl~---~h------~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+++|++.|.+..||.++|...+..+ .. ..|++.+|| |..|++|..|.+|++|.
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 7889999999999999987755442 21 338888888 78999999999999996
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=246.80 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=230.5
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..||.+.|+.+.|+ +..|+|||.|..|.+|+.... ++....+++|.++|..+.|.+|+..++|+|.|++++.||+++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 44899999999999 349999999999999998753 455778899999999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCCeEEeccC---CCEEEEEecCCeEEEEeCC--CceeeeccCCCeEEEEEe--CCEEEEEECCCcEEE
Q 002389 723 RKLELIEVIATKEPIRKLDTY---GKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQE 795 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~---g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~i 795 (929)
|+... ...+|..-|.++.|. ...+.+++.|+++++||++ ...+++...-.++++.|. ..++++|+-|+.|++
T Consensus 122 G~~~r-k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIR-KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeee-hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceee
Confidence 98543 444677777777653 3478899999999999998 345555556779999997 456999999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----CCeEEEecCCCC----CeEEEE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----KPQISIAPEKGT----TIQAMA 867 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~----~~~i~~l~~h~~----~V~sla 867 (929)
||++.+.... +..+|..+|+.+..++++.++.+-+ .|.++++||.+. .+++..+.+|.. ....++
T Consensus 201 Wd~r~~d~~~------~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 201 WDLRKNDGLY------TLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred eccccCcceE------EeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9998765433 3478999999999999999998877 678999999753 445777777654 456789
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcC--CEEEEEECCCcEEEe
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAN--DIVLCGTETGLIKGW 926 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~dg--~~LaSgs~DG~I~IW 926 (929)
|+|++.++.+|+.|..+++||......++.+.+|. .|+++.|.+ .+|.+++.|.+|++=
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999999999999999999999999999994 599998874 599999999999863
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.1e-27 Score=258.54 Aligned_cols=269 Identities=18% Similarity=0.212 Sum_probs=225.0
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
+..|++++|+ +..||+|+.||.++||+..... +.++..|++||.++.|+..|.||++++.||++.+||..+|...
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 5689999999 5599999999999999998753 6788999999999999999999999999999999999998754
Q ss_pred EEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCC--Cceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 002389 727 LIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 800 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~t 800 (929)
... .-|..+-..+. .+.+.+++.+.|+.|+++.+. ++..++.+ +..|.++.|. .|. +++++.|+++++|....
T Consensus 312 q~f-~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 312 QQF-EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred Eee-eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 433 33444423333 345678999999999999887 56666665 4569999997 566 77899999999999876
Q ss_pred CccceecccccccccCCCCeEEEEEcCCc---------eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDW---------LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~---------i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
+... ..+..|.+.|.++.++|.+ ...++.+ .|+++++||...+.++..+..|+.+|++++|+|+
T Consensus 391 ~~~~------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 391 SNSV------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred Ccch------hhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 4332 3345677888888887652 2233333 6789999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+|+|+|+.||.|.+|+.++++.++.+.+.+.|..++|+ |+.|..+-.||.+++-|.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 999999999999999999999999999999889999987 889999999999998764
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=239.28 Aligned_cols=268 Identities=16% Similarity=0.221 Sum_probs=224.5
Q ss_pred cceeEEEEEeecCCCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 634 ISCVHTQILEASHKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 634 ~~~~~t~~l~~~~gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D 712 (929)
..|..++. -.++.|+.+... ++..++++..-.||+||+++++..++.++.+|++.|+++.|..+|++++|||.|
T Consensus 30 G~C~rTiq-----h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 30 GICSRTIQ-----HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred CeEEEEEe-----cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence 34555544 336789999998 444444444578999999999888999999999999999999999999999999
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCCc--eeeecc--CCCeEEEEEe-CCE-E
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT--LKDIYR--SKGIKSMSVV-QGK-I 784 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~--~~~V~sla~s-dg~-l 784 (929)
|++||||++. +.+.....+..+|.++ .|+...++++..+|.|++||+... ...+.+ ...|.++.+. ||. +
T Consensus 105 gt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 105 GTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred ceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence 9999999998 4556667788999875 567778999999999999999843 233322 4568888886 887 6
Q ss_pred EEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEecCCCCCe
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTI 863 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~~i~~l~~h~~~V 863 (929)
+++...|..++|++-++.......|...+..|...+....++|+..++++.| .|.+++||+.++. +....+.+|..++
T Consensus 183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 183 AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDFFKLELVLTGHQRWV 261 (311)
T ss_pred EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCCceeeEEEeecCCceE
Confidence 6677889999999998777766677778899999999999999999999887 7789999999887 5566788999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEE
Q 002389 864 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLT 909 (929)
Q Consensus 864 ~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~ 909 (929)
+..+||.||.||++|+.|+.+++|++..++.+..+.+|.+ -.|++.
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999999999999999999999999999965 555554
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.5e-27 Score=274.32 Aligned_cols=235 Identities=16% Similarity=0.270 Sum_probs=204.1
Q ss_pred CCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCe-----------------------------eEEEEeccCCCcEEEE
Q 002389 649 SGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSA-----------------------------MLVWDVKEHRKAVTSF 697 (929)
Q Consensus 649 ~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~-----------------------------~~i~~l~gH~~~Vtsl 697 (929)
...|+|..|+|+ .+|.|..|..|++|.+...+. ....++-||.+||...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 567999999944 799999999999999873210 1244577999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeE
Q 002389 698 SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIK 775 (929)
Q Consensus 698 afspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~ 775 (929)
.|+|+.++|+|+|.|+++|+|.+.+..+..... +|..||.. |+|.|-++++++.|++-++|....
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~------------ 524 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH------------ 524 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeeccc------------
Confidence 999999999999999999999999987654443 88888874 778888888888888777776531
Q ss_pred EEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 776 SMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 776 sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
..|.+++.+|...+.++.+||+..|.+++| .|.++++||..+|..++.
T Consensus 525 -------------------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 525 -------------------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGS-SDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred -------------------------------CCchhhhcccccccceEEECCcccccccCC-CCceEEEEEcCCCcEEEE
Confidence 123367788899999999999999999886 889999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+.||.++|.+++|||+|++|++|+.||.|.+||+.+|+.+..+.+|.. |.+++|+ |..|++||.|.+|++||.
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999999999999999999999999999999999999999944 8888875 899999999999999996
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=260.41 Aligned_cols=233 Identities=15% Similarity=0.241 Sum_probs=205.8
Q ss_pred CCCCCCEEEEEEeC---C-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 646 HKCSGAVTALIYYK---G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~---~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
.||.+.|.++.|++ + .+|||+.||+|++|++.+. .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~ 291 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE 291 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccc
Confidence 39999999999983 2 7999999999999999986 4589999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--Cceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEE
Q 002389 722 QRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQ 794 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~ 794 (929)
++. +.....+|...|.+ |.++|..+++|+.|..-+|||++ +++..+.+ .+.|.+++|+ +|. +++|+.|++++
T Consensus 292 tk~-ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 292 TKS-ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred cch-hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence 986 45566789999985 67899999999999999999998 34444544 4679999998 887 88999999999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcC-CceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
|||++..... .....|...|+.+.+.| .+.++++.+ -|+++++|...+..+++.+.||.+.|.++.++||+.
T Consensus 371 VWDLR~r~~l------y~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 371 VWDLRMRSEL------YTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQ 443 (459)
T ss_pred Eeeecccccc------eecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCcccchhhcCCccceEEEEeccCCc
Confidence 9999875442 33467899999999998 566777766 778999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEE
Q 002389 874 YLNYNSSASSLQIWL 888 (929)
Q Consensus 874 ~LaSgS~DG~I~IWd 888 (929)
+++|++.|.++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999995
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.9e-25 Score=236.98 Aligned_cols=271 Identities=22% Similarity=0.329 Sum_probs=223.0
Q ss_pred CCCCCEEEEEEeC--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.++|++++|++ +++++|+.||.|++|+..+++ ....+.+|...+.++.|+|+++++++++.||.|++||+.+++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 8999999999993 589999999999999999775 366778999999999999999999999999999999998865
Q ss_pred EEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCC--ceeeec-cCCCeEEEEEe-CCEEEE-EECCCcEEEEE
Q 002389 725 LELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIY-RSKGIKSMSVV-QGKIYI-GCMDSSIQELA 797 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~-~~~~V~sla~s-dg~lls-gs~Dg~I~iwD 797 (929)
... ....+...+.++ .+++..+++++.++.+.+||+.. ....+. +...+.++.++ ++.+++ ++.++.+++||
T Consensus 85 ~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 85 CVR-TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred ceE-EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 333 334566677764 55667788777799999999972 233333 24469999998 466555 45599999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+.+++... .+..+...+.++.+++++...+..+ .++.+++||...+.....+..|...+.++.|+|++.++++
T Consensus 164 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 164 LRTGKCVA------TLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred ccccccce------eEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 98654432 2345677899999999986655555 4889999999988888888889999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 878 NSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
++.||.|++|+..+++.+..+..|. .|.++.|+ ++.+++++.||.|++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9889999999999999999998874 59998887 47999999999999996
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.1e-27 Score=261.86 Aligned_cols=275 Identities=18% Similarity=0.182 Sum_probs=225.6
Q ss_pred CCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.||+..|+++.|. ..+|++|+.|+.|+||++... ..+++++.+|..+|.+++|+++|..++|+|.|+++++||+++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 3999999999998 348999999999999999873 256999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCCeEEeccCC-CEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 723 RKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g-~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
|++......+....+..+.|++ +.+++|+.|+.|+.||++. .++.+.. -..|..+.|- +|+ +++.+.|+++++|
T Consensus 290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 9976665555555556678887 7899999999999999983 2333333 3568899986 554 9999999999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC---CeEEEecCCC--CCeEEEEEecC
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKG--TTIQAMAVVED 871 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~---~~i~~l~~h~--~~V~slafSpd 871 (929)
+...+...... ...+.....++..||.+.+.++-+ .|+.|.+|..... .....+.||. +.-..+.||||
T Consensus 370 e~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 370 ENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EcCCCccchhh-----cchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99876543321 122344566788899999888766 6788999985432 2234667775 35677899999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc---CCEEEEEECCCcEEEee
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA---NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d---g~~LaSgs~DG~I~IWd 927 (929)
|.+|++|+.||.+.+||.++-+.+..+++| .+++.+.|. ...++|+|.||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999 558999998 45999999999999996
No 18
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.2e-26 Score=247.25 Aligned_cols=270 Identities=14% Similarity=0.184 Sum_probs=223.1
Q ss_pred CCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE---EEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES---LLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~---LaSgs~DgtIrIWDl~tg 723 (929)
.|.+.|.+|...+++|+||++||+++|||..+. ....+.||.++|.+++|...+.. ++++|.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 589999999999899999999999999999864 36788899999999988754444 999999999999999877
Q ss_pred eEEEE---EEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCC---------------------------ceeeecc-
Q 002389 724 KLELI---EVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR---------------------------TLKDIYR- 770 (929)
Q Consensus 724 ~~~~~---~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~---------------------------~~~~l~~- 770 (929)
..... ...+|+.+|.+++ +++..+++|+.|.++++|+... ...++.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 54221 1238999998865 7889999999999999999320 1111222
Q ss_pred CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 002389 771 SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 849 (929)
Q Consensus 771 ~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~ 849 (929)
...|.++.|+ .+.+++++.|.+|+.||+.++...... ..+..+.++..++....+++++ .|..|++||.++
T Consensus 260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~-------~~~ksl~~i~~~~~~~Ll~~gs-sdr~irl~DPR~ 331 (423)
T KOG0313|consen 260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL-------TTNKSLNCISYSPLSKLLASGS-SDRHIRLWDPRT 331 (423)
T ss_pred ccceeeEEEcCCCceEeecccceEEEEEeecccceeee-------ecCcceeEeecccccceeeecC-CCCceeecCCCC
Confidence 3458899998 556999999999999999998765542 2367899999999887777766 778999999876
Q ss_pred CC---eEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-EEEEEeCCC-CeEEEEEc-CCEEEEEECCCc
Q 002389 850 KP---QISIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQ-KVGRISAGS-KITSLLTA-NDIVLCGTETGL 922 (929)
Q Consensus 850 ~~---~i~~l~~h~~~V~slafSpdg-~~LaSgS~DG~I~IWdl~sg~-~i~tl~~h~-~Vtsvs~d-g~~LaSgs~DG~ 922 (929)
+. ..+.+.+|.++|.++.|+|.. ..|++|+.||++++||+++-. +++.+.+|. +|.++.|+ +..|++||.|.+
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNK 411 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcce
Confidence 43 567889999999999999954 567999999999999988877 899999995 49999998 669999999999
Q ss_pred EEEee
Q 002389 923 IKGWI 927 (929)
Q Consensus 923 I~IWd 927 (929)
|+|+.
T Consensus 412 l~i~~ 416 (423)
T KOG0313|consen 412 LRIFK 416 (423)
T ss_pred EEEec
Confidence 99985
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=263.47 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=231.5
Q ss_pred ceeEEEEEeecCCCCCCEEEEEEeCC----EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 002389 635 SCVHTQILEASHKCSGAVTALIYYKG----LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 710 (929)
Q Consensus 635 ~~~~t~~l~~~~gH~~~Vtsl~fs~~----~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs 710 (929)
.|.|.+. ||.|.|.++.|++. .|++|+.|++|++||+.+... .++++..|.+.|++++|++|+..++++|
T Consensus 138 ~~th~fk-----G~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~ 211 (775)
T KOG0319|consen 138 YCTHSFK-----GHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVG 211 (775)
T ss_pred EEEEEec-----CCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEec
Confidence 4667666 99999999999944 589999999999999996543 4778899999999999999999999999
Q ss_pred CCCeEEEEEccCCeEE----------------------------------------------------------------
Q 002389 711 ADKTIGVWQMVQRKLE---------------------------------------------------------------- 726 (929)
Q Consensus 711 ~DgtIrIWDl~tg~~~---------------------------------------------------------------- 726 (929)
.|+.+.|||+.+.+..
T Consensus 212 RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~ 291 (775)
T KOG0319|consen 212 RDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIE 291 (775)
T ss_pred cCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceecc
Confidence 9999999997332110
Q ss_pred ------------------------------------------------------------------EEEEeccCCCeEEe
Q 002389 727 ------------------------------------------------------------------LIEVIATKEPIRKL 740 (929)
Q Consensus 727 ------------------------------------------------------------------~~~~~~h~~~V~s~ 740 (929)
+....+|.+.|.++
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL 371 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL 371 (775)
T ss_pred ccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeee
Confidence 23334555566665
Q ss_pred c--cCCCEEEEEecCCeEEEEeCCC-ce-----eeec-cCCCeEEEEEe-CC--EEEEEECCCcEEEEEccCCccceecc
Q 002389 741 D--TYGKTIFASTQGHRMKVIDSSR-TL-----KDIY-RSKGIKSMSVV-QG--KIYIGCMDSSIQELAVSNNVEREIKA 808 (929)
Q Consensus 741 s--~~g~~L~sgs~Dg~V~IWDl~~-~~-----~~l~-~~~~V~sla~s-dg--~llsgs~Dg~I~iwDl~tg~~~~i~~ 808 (929)
. ..|..+++++.|+++++|.+++ +. .... +...|.+++++ .+ .+++++.|+++++|++...+.... +
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~ 450 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-P 450 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-c
Confidence 5 4556888999999999998742 11 1122 24558888887 22 388899999999999987433322 1
Q ss_pred ccc----ccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 002389 809 PFK----SWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSL 884 (929)
Q Consensus 809 ~~~----~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I 884 (929)
+.. .-..|.+.|+++++.|+....+++| .|++.++|++.......++.||...|+++.|+|..+.++|+|.|++|
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S-qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGS-QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecc-cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence 111 2346899999999999999988887 88999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEeCCCC-eEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 885 QIWLRGTQQKVGRISAGSK-ITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 885 ~IWdl~sg~~i~tl~~h~~-Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
+||.+.++.+++++.||.. |...+| +|+.|++++.||.|++|++
T Consensus 530 KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 9999999999999999954 777666 5889999999999999986
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.3e-26 Score=250.57 Aligned_cols=276 Identities=17% Similarity=0.224 Sum_probs=228.3
Q ss_pred eecCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCC--eeEEEEe------cc----CCCcEEEEEEcCCCCEEE
Q 002389 643 EASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS--AMLVWDV------KE----HRKAVTSFSLFEPGESLL 707 (929)
Q Consensus 643 ~~~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~--~~~i~~l------~g----H~~~Vtslafspdg~~La 707 (929)
++.. |+.+|.+.+|+ ++.+++|+.|-+.++|++.... ......+ -+ ....|++++|+.+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4444 99999999998 4589999999999999997511 1100111 11 235799999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCe-EEEEEe-C
Q 002389 708 SGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGI-KSMSVV-Q 781 (929)
Q Consensus 708 Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V-~sla~s-d 781 (929)
+|+.||.+++|+...+. ......|+.||.++ ...|++|++++.|+++.+||... ..+.+..+... ..+.|- +
T Consensus 252 tG~~~G~~riw~~~G~l--~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNL--ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN 329 (524)
T ss_pred EeecCcEEEEEecCchh--hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence 99999999999985442 23445799999975 56788999999999999999853 33334334444 667886 7
Q ss_pred CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 861 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~ 861 (929)
..+++.+.|+.|+++.+... .|.+.+.+|..+|..+.+.|.+..+++.| +|++++||+.........+.+|..
T Consensus 330 ~~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~~l~~Hsk 402 (524)
T KOG0273|consen 330 DEFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVHDLQAHSK 402 (524)
T ss_pred ceEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcchhhhhhhcc
Confidence 77999999999999998763 44566788999999999999999998887 899999999988888899999999
Q ss_pred CeEEEEEecCC---------CEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 862 TIQAMAVVEDF---------IYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 862 ~V~slafSpdg---------~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.|..+.|+|+| ..+++++.|++|++||+..|.++++|..| .+|.+++|+ |+++++|+.||.|++|++
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 99999999965 47899999999999999999999999888 459998876 889999999999999985
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=229.58 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=226.8
Q ss_pred ecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 644 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
....|+++|..+.|+ ++|.++++.|.+|++|+...+. +++++.+|...|..++.+.|+..+++|+.|+.|.+||+.
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--eeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 345899999999999 6699999999999999999885 489999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCC----Cceeeecc-CCCeEEEEEeCCEEEEEECCCcEE
Q 002389 722 QRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS----RTLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQ 794 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~----~~~~~l~~-~~~V~sla~sdg~llsgs~Dg~I~ 794 (929)
+|+. .....+|...|.++ ......+++|+.|.++++||-+ .+++.+.. ...|.++...+-.+++|+.||+++
T Consensus 90 TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 90 TGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR 168 (307)
T ss_pred cCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence 9985 45666899999875 5566789999999999999987 23334433 567999999998999999999999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe--EEEEEecCC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI--QAMAVVEDF 872 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V--~slafSpdg 872 (929)
.||++.|.... ..-+.||+++.+++++...++.+ -|+++++.|..+|+++..+.||...- ...+++...
T Consensus 169 tydiR~G~l~s--------Dy~g~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 169 TYDIRKGTLSS--------DYFGHPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred EEEeecceeeh--------hhcCCcceeEEecCCCCEEEEee-ccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 99999876533 22378999999999999888776 67899999999999999999998743 345677778
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--eEEEEEcCC--EEEEEECCCcEEEe
Q 002389 873 IYLNYNSSASSLQIWLRGTQQKVGRISAGSK--ITSLLTAND--IVLCGTETGLIKGW 926 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~--Vtsvs~dg~--~LaSgs~DG~I~IW 926 (929)
..+++||+||.|++||+.+...+..+..++. |+++++.++ -|++++.. .+..|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 8999999999999999999999999998866 577887754 34444433 35555
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=233.01 Aligned_cols=238 Identities=12% Similarity=0.124 Sum_probs=204.0
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeC
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
.++++||.+.|.++.|++|.++|+|+|.||.+.|||.-+...+..... ....|. +++|.|+++++|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 478899999999999999999999999999999999887653332222 223333 58999999999999999999998
Q ss_pred CCc--------eeeeccC-CCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC-Cce
Q 002389 762 SRT--------LKDIYRS-KGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWL 830 (929)
Q Consensus 762 ~~~--------~~~l~~~-~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i 830 (929)
... .+.+.++ ..+.|..|. |+++++++.|.+..+||+.+|+... .+.+|...|.++.+.| ++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~------~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ------VFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE------EecCCcccEEEEecCCCCCC
Confidence 721 2223333 458888887 7889999999999999999987654 4578999999999999 777
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---CCeEEE
Q 002389 831 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---SKITSL 907 (929)
Q Consensus 831 ~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h---~~Vtsv 907 (929)
..++++ -|+..++||++.+..++.+.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+... .+|+++
T Consensus 201 tFvSg~-cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGG-CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecc-cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 777776 6789999999999999999999999999999999999999999999999999999999888855 349999
Q ss_pred EEc--CCEEEEEECCCcEEEeecC
Q 002389 908 LTA--NDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 908 s~d--g~~LaSgs~DG~I~IWdil 929 (929)
+|+ |++|++|..|.++.+||.+
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred EEcccccEEEeeecCCceeEeecc
Confidence 987 9999999999999999964
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.4e-25 Score=226.02 Aligned_cols=274 Identities=12% Similarity=0.197 Sum_probs=218.1
Q ss_pred ecCCCCCCEEEEEEeCC---EEEEEECCCeEEEEECCC-CCeeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 644 ASHKCSGAVTALIYYKG---LLCSGFSDGSIKMWDIKK-QSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs~~---~LaSGs~DGtIrIWD~~~-~~~~~i~~l-~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
...+|.+.|+.++|+++ .|||||.|+.|+||+... ........+ .+|+..|.+++|+|.|++|++||.|.++.||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 34599999999999955 799999999999999984 333333333 5899999999999999999999999999999
Q ss_pred EccCCeEEEEEEe-ccCCCeEE--eccCCCEEEEEecCCeEEEEeCC-----CceeeeccC-CCeEEEEEeC--CEEEEE
Q 002389 719 QMVQRKLELIEVI-ATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-----RTLKDIYRS-KGIKSMSVVQ--GKIYIG 787 (929)
Q Consensus 719 Dl~tg~~~~~~~~-~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~-----~~~~~l~~~-~~V~sla~sd--g~llsg 787 (929)
.-..+...+.... +|...|.+ |+.+|+++++++.|..|-||.+. .+...+..+ ..|+.+.|+. +-++++
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 9888877766554 89998885 68899999999999999999987 233444444 4599999984 669999
Q ss_pred ECCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEE
Q 002389 788 CMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM 866 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sl 866 (929)
+.|.+|++|.-..+.. ... ..+.+|...+.++.|++.+..+++.+ +|++++||...+.- ..-|...++.+
T Consensus 169 SYDnTIk~~~~~~dddW~c~----~tl~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~Iw~~~~~~----~~~~sr~~Y~v 239 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECV----QTLDGHENTVWSLAFDNIGSRLVSCS-DDGTVSIWRLYTDL----SGMHSRALYDV 239 (312)
T ss_pred ccCCeEEEEeecCCCCeeEE----EEecCccceEEEEEecCCCceEEEec-CCcceEeeeeccCc----chhcccceEee
Confidence 9999999998874332 222 45577888999999999998888777 89999999865332 22377889999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCC--cE----EE-EEeCCC-CeEEEEEcC---CEEEEEECCCcEEEeec
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQ--QK----VG-RISAGS-KITSLLTAN---DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg--~~----i~-tl~~h~-~Vtsvs~dg---~~LaSgs~DG~I~IWdi 928 (929)
.|. ...|+|++.|+.|++|....+ ++ +. .-..|. .|+++.|++ +.|++|++||.|++|..
T Consensus 240 ~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 240 PWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 998 557999999999999975542 12 22 222443 399999985 59999999999999975
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.8e-27 Score=251.37 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=227.2
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
..+|..|.|. +..|++|+..|.+.+|+..+-.. -..+++|..+|+++.|+++|.+++||+.+|.|++|+..-.. +
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V 172 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V 172 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence 4589999999 34899999999999999865432 23457999999999999999999999999999999986544 2
Q ss_pred EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--CceeeeccCC-CeEEEEEe--CCEEEEEECCCcEEEEEcc
Q 002389 727 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSK-GIKSMSVV--QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 727 ~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~-~V~sla~s--dg~llsgs~Dg~I~iwDl~ 799 (929)
......|...|++ |+++...+++++.||+|+|||.. .....+.+++ .|++++|+ .|.+++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 2233345577875 67888999999999999999987 3344455544 49999998 6669999999999999999
Q ss_pred CCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-CCCEEEEE
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIYLNYN 878 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp-dg~~LaSg 878 (929)
+|.... ....|...|..+.+.+++.++++.| .|..++++|+++.+.+..+.+|...|+++.|+| ...++.+|
T Consensus 253 Sg~cl~------tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 253 SGSCLA------TLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred Ccchhh------hhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 987643 3367899999999999999999887 889999999998888889999999999999999 66788999
Q ss_pred eCCCcEEEEECCCCcEEEEEe-CC-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 879 SSASSLQIWLRGTQQKVGRIS-AG-SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 879 S~DG~I~IWdl~sg~~i~tl~-~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+.||.|..|.+...+++..+. +| ..|++++|+ |.+|++|+.|.++++|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999999998777777776 34 449999988 88999999999999995
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.3e-24 Score=271.16 Aligned_cols=274 Identities=13% Similarity=0.156 Sum_probs=215.2
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCC----e--eEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEE
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS----A--MLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGV 717 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~----~--~~i~~l~gH~~~Vtslafspd-g~~LaSgs~DgtIrI 717 (929)
+|.+.|++++|+ ++++++|+.||+|+|||..... . .+...+. +...|.+++|+|. +.+|++|+.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 699999999999 4489999999999999986421 0 1223343 3568999999874 678999999999999
Q ss_pred EEccCCeEEEEEEeccCCCeEEe--cc-CCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe--CCE-EEEEEC
Q 002389 718 WQMVQRKLELIEVIATKEPIRKL--DT-YGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV--QGK-IYIGCM 789 (929)
Q Consensus 718 WDl~tg~~~~~~~~~h~~~V~s~--s~-~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s--dg~-llsgs~ 789 (929)
||+.+++.. ....+|...|.++ ++ ++..+++++.|++|++||+.. ....+..+..+.++.|+ +|. +++|+.
T Consensus 560 Wd~~~~~~~-~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 560 WDVARSQLV-TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EECCCCeEE-EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeC
Confidence 999987643 3455788899875 43 567999999999999999873 34444455678899985 455 888999
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCeEEEecCCCCCe
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQISIAPEKGTTI 863 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~------~~~i~~l~~h~~~V 863 (929)
||.|++||+.++.. +...+.+|...|..+.+.+ +.++++.+ .|++|++||+.. ...+..+.+|...+
T Consensus 639 dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~~-~~~lvs~s-~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 639 DHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFVD-SSTLVSSS-TDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred CCeEEEEECCCCCc-----cceEecCCCCCEEEEEEeC-CCEEEEEE-CCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 99999999987432 1133467888999999974 44555555 688999999864 24677889999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------------CC-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 864 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-------------AG-SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 864 ~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~-------------~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
..++|+|++.+|++|+.||.|++|+.....++..+. .+ ..|.+++|+ +..|++|+.||.|+||+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 999999999999999999999999987665543322 12 238889886 66999999999999999
Q ss_pred cC
Q 002389 928 PL 929 (929)
Q Consensus 928 il 929 (929)
++
T Consensus 792 ~~ 793 (793)
T PLN00181 792 MV 793 (793)
T ss_pred cC
Confidence 85
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=259.04 Aligned_cols=278 Identities=17% Similarity=0.306 Sum_probs=228.3
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
..|...|+++.|+ +..+++++.|+.+++|+..+.+......+.+|...|.+++|+|+|+++++|+.|++|+|||+..+
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3458999999999 44899999999999999976652246677899999999999999999999999999999999444
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeeccC-CCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
........+|...|++ |++.++.+++|+.|++|++||+.. +...+..+ ..|.+++|+ +|. +++++.|+.|++|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 3344455599999985 678899999999999999999984 44555554 479999998 665 7888999999999
Q ss_pred EccCCccceecccccccccC-CC-CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC---eEEEEEecC
Q 002389 797 AVSNNVEREIKAPFKSWRLQ-SK-PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT---IQAMAVVED 871 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~-~~-~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~---V~slafSpd 871 (929)
|+.++..... +....+ .. +++.+.++|++.+.++.+ .|+.+++||+..+.....+.+|... +.+...+++
T Consensus 316 d~~~~~~~~~----~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 316 DLETGSKLCL----KLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred ECCCCceeee----ecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 9999873200 111222 22 799999999999999877 7789999999999999999998875 344455789
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCC-C-CeEEEEEc--CCEEEEEE--CCCcEEEeec
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKVGRISAG-S-KITSLLTA--NDIVLCGT--ETGLIKGWIP 928 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~-~Vtsvs~d--g~~LaSgs--~DG~I~IWdi 928 (929)
+.++++|+.|+.|++||..++..+..+.+| . .|..++++ ..++++++ .|+.+++|..
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 999999999999999999999999999999 3 36666665 67888888 7999999963
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2e-24 Score=237.90 Aligned_cols=276 Identities=18% Similarity=0.228 Sum_probs=214.6
Q ss_pred CCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 646 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~---gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
..|..-|.|+.|+ | .+++|++.||+|.+||-++++. +..+. +|++.|.+++|+||++.++|+|.|+++||||+
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 4799999999999 3 3999999999999999999864 77776 99999999999999999999999999999999
Q ss_pred cCCeEEEE------------------------------------------EEeccCCCeEE--eccCCCEEEEEecCCeE
Q 002389 721 VQRKLELI------------------------------------------EVIATKEPIRK--LDTYGKTIFASTQGHRM 756 (929)
Q Consensus 721 ~tg~~~~~------------------------------------------~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V 756 (929)
.+++++.. ...+|...|++ +++++.++++|+.||.|
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 87654311 12245666665 45788999999999999
Q ss_pred EEEeCCCceee-e---ccCC------------------------------------------------------------
Q 002389 757 KVIDSSRTLKD-I---YRSK------------------------------------------------------------ 772 (929)
Q Consensus 757 ~IWDl~~~~~~-l---~~~~------------------------------------------------------------ 772 (929)
.-|+....... + .+..
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 99997510000 0 0000
Q ss_pred --------------------CeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce
Q 002389 773 --------------------GIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL 830 (929)
Q Consensus 773 --------------------~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i 830 (929)
...+++++ ++. ++.|+.|+.+++|.+..+..... .....|..+++.++++|++.
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----AKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----eeeecccCCceEEEECCCCc
Confidence 01133444 343 66688888888888887654332 23345788999999999999
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-eCC-CCeEEE
Q 002389 831 YSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI-SAG-SKITSL 907 (929)
Q Consensus 831 ~~~s~S~dDgtI~IWDl~~~~~i~~l-~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl-~~h-~~Vtsv 907 (929)
|++++. ..+.+.+||..+++..... .-|+..|.+++|+|+...+||||-|-.|.||+++.....-.+ .+| ..|+.+
T Consensus 501 yla~~D-a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 501 YLAAGD-ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred EEEEec-cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence 999876 4578999999888764433 349999999999999999999999999999998775544333 355 239999
Q ss_pred EEc-CCEEEEEECCCcEEEeec
Q 002389 908 LTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 908 s~d-g~~LaSgs~DG~I~IWdi 928 (929)
.|- ...+++.|.|..|++|++
T Consensus 580 ~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 580 AWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEecCceEEeccCcceeEEecc
Confidence 984 789999999999999986
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.2e-24 Score=245.48 Aligned_cols=289 Identities=17% Similarity=0.257 Sum_probs=231.0
Q ss_pred ccccceecCCCcccceeEEEEEeecCCCCCCEEEEEEe--CCEEEEEECC-CeEEEEECCCCCeeEEEEeccCCCcEEEE
Q 002389 621 HKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSD-GSIKMWDIKKQSAMLVWDVKEHRKAVTSF 697 (929)
Q Consensus 621 ~kv~~~~~~~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs--~~~LaSGs~D-GtIrIWD~~~~~~~~i~~l~gH~~~Vtsl 697 (929)
...+.|.+|. ..++|.+. =...+|..++|+ +++||.|+.. |.+-||+..+... +...++|...++++
T Consensus 287 G~f~LyelP~---f~lih~LS-----is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l 356 (893)
T KOG0291|consen 287 GEFGLYELPD---FNLIHSLS-----ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSL 356 (893)
T ss_pred CeeEEEecCC---ceEEEEee-----cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeE
Confidence 3333455554 56777655 235689999999 8899988776 8999999998754 67778999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--CceeeeccCCC
Q 002389 698 SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKG 773 (929)
Q Consensus 698 afspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~ 773 (929)
+++|||++++||+.||.|+|||...|-|.. ....|...|+. |+..++.+++.+-||+|+.||+. ++.+++....+
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v-TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFV-TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEE-EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 999999999999999999999999887644 34468888875 67889999999999999999998 57777776555
Q ss_pred --eEEEEEe-CCEEEE-EECCC-cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 774 --IKSMSVV-QGKIYI-GCMDS-SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 774 --V~sla~s-dg~lls-gs~Dg-~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
..|++.. .|.+++ |+.|. .|.+|++.+|+...+ ..+|..||.++.++|.+..+++.| -|++|++||+-
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi------LsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if 508 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI------LSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIF 508 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh------hcCCCCcceeeEEccccCeEEecc-ccceEEEEEee
Confidence 5577775 566554 55555 599999999987655 478999999999999999888777 78999999974
Q ss_pred CC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---------------------CCeEE
Q 002389 849 RK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---------------------SKITS 906 (929)
Q Consensus 849 ~~-~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h---------------------~~Vts 906 (929)
.. ..+.++ .+...+..++|+|||+.+++++.||.|.+||.+.+..+.++.+- ..+++
T Consensus 509 ~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt 587 (893)
T KOG0291|consen 509 SSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT 587 (893)
T ss_pred ccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence 43 223333 46678999999999999999999999999998887766555421 11555
Q ss_pred EE--EcCCEEEEEECCCcEEEeec
Q 002389 907 LL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 907 vs--~dg~~LaSgs~DG~I~IWdi 928 (929)
+. +||..|++||..+.|++|++
T Consensus 588 i~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred EEEcCCCCEEEecCCcccEEEEEC
Confidence 55 56999999999999999985
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=7.2e-25 Score=225.99 Aligned_cols=235 Identities=17% Similarity=0.191 Sum_probs=190.6
Q ss_pred ecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 644 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
...||+..|..+..+ +++.++++.||++++||+.+++ ..+.|.||...|.+++|+||+..++||+.|++|++||+.
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 344899999999998 4489999999999999999985 478899999999999999999999999999999999996
Q ss_pred CCeEEEEEEec-cCCCeEE--eccC--CCEEEEEecCCeEEEEeCCCcee--eecc-CCCeEEEEEe-CCE-EEEEECCC
Q 002389 722 QRKLELIEVIA-TKEPIRK--LDTY--GKTIFASTQGHRMKVIDSSRTLK--DIYR-SKGIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 722 tg~~~~~~~~~-h~~~V~s--~s~~--g~~L~sgs~Dg~V~IWDl~~~~~--~l~~-~~~V~sla~s-dg~-llsgs~Dg 791 (929)
.+. ......+ +.+-|.+ |+|+ ..+|++++.|++|++||++++.. .+.+ .+.++.++++ ||. .++|+.||
T Consensus 136 g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 136 GVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred ccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 543 3333333 3677776 5666 56899999999999999996433 2233 4569999998 888 66699999
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC----C-----CCC
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE----K-----GTT 862 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~----h-----~~~ 862 (929)
.+.+||+..++.... ..+..+|.++.|.|+...++... +..|+|||+.++.++..+.. . ...
T Consensus 215 ~~~LwdL~~~k~lys-------l~a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYS-------LEAFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred eEEEEEccCCceeEe-------ccCCCeEeeEEecCCceeEeecc--CCceEEEeccchhhhhhccccccccccccCCcE
Confidence 999999998776433 35688999999999987766553 56799999998876654432 2 234
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
..+++|++||..|.+|..|+.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 5678999999999999999999999864
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5e-25 Score=250.87 Aligned_cols=271 Identities=13% Similarity=0.205 Sum_probs=229.9
Q ss_pred CCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
|-.+.|.+++|- ++++|.++..+.+|+|+..+..+ +.+.||++.|.++....+|..|+|||.|+++++|.++++
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 788999999997 36999999999999999998876 467899999999996678889999999999999988544
Q ss_pred eEE---EEEEeccCCCeEEec---cCCCEEEEEecCCeEEEEeCCC-------cee-----eeccCCCeEEEEEe-CCE-
Q 002389 724 KLE---LIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR-------TLK-----DIYRSKGIKSMSVV-QGK- 783 (929)
Q Consensus 724 ~~~---~~~~~~h~~~V~s~s---~~g~~L~sgs~Dg~V~IWDl~~-------~~~-----~l~~~~~V~sla~s-dg~- 783 (929)
... .....+|...|.++. .....++++|.|+++++|++.+ ... ...+.+.|+|++++ +++
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 321 223347888887654 2345899999999999999885 111 01235679999997 555
Q ss_pred EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 002389 784 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 863 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V 863 (929)
+++|+.|.+.++|++..+... ..+.+|...+.++.|++.....++.| .|++|+||.+.+..+.+++.||+..|
T Consensus 478 iAT~SqDktaKiW~le~~~l~------~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLL------GVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred EEecccccceeeecccCceEE------EEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccceeeeeecCcccee
Confidence 778999999999999965443 34578999999999999888877776 78999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 864 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 864 ~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
....|-.+|+.|+|++.||-|++|++++++++.++.+| .+|++++.+ ..+++||+.||.|.+|.
T Consensus 551 lra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999999999 459998855 66999999999999995
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-25 Score=245.60 Aligned_cols=269 Identities=13% Similarity=0.216 Sum_probs=231.5
Q ss_pred CCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.|++.|.+|.+++. +++++-.+|.|.|||.+++. .+..+.-..-||.+..|-+-.+++++|++|..|+|++..+++
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 47899999999944 99999999999999999885 478888888999999999999999999999999999999987
Q ss_pred EEEEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCC---ceeeeccC-CCeEEEEEe---CCEEEEEECCCcEEE
Q 002389 725 LELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR---TLKDIYRS-KGIKSMSVV---QGKIYIGCMDSSIQE 795 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~---~~~~l~~~-~~V~sla~s---dg~llsgs~Dg~I~i 795 (929)
. ......|.+.|+++. |...+++++++|-+|++||.++ +.+++.++ +.|.+++|. .+.+++++-|++|++
T Consensus 89 k-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 89 K-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred e-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 4 445667999999865 6667999999999999999984 56666665 459999996 345999999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~--i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
|.+.... |...+.+|...|+++.+.+.+ .++++++ ||.++++||.++..+++++.||...|..+.|+|.-.
T Consensus 168 Wslgs~~------~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 168 WSLGSPH------PNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred EEcCCCC------CceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 9997743 335567899999999998654 5777766 899999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEE--cCCEEEEEECCCcEEE
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLT--ANDIVLCGTETGLIKG 925 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~--dg~~LaSgs~DG~I~I 925 (929)
.++|||+||+++||+..+-+...++.-+ .+|+|++. .+..++.|.+.|.|.+
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999988887777755 56999984 4667888888887754
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=2.8e-26 Score=240.99 Aligned_cols=228 Identities=16% Similarity=0.234 Sum_probs=200.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC--Cceee
Q 002389 690 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKD 767 (929)
Q Consensus 690 H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~ 767 (929)
...+|+|+.+ |+..++||..|++|+|||..+-.+ .....+|.+.|.|+..+.+.+++|+.|.+|++||++ .++++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHH-HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH
Confidence 4568999998 667799999999999999877553 334568999999999999999999999999999998 45566
Q ss_pred ecc-CCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 768 IYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 768 l~~-~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
+.+ -..|..+.|++|.+++++.|.++.+||+......... ++..+|...++.+.+... +.++.| .|.+|++|+
T Consensus 273 lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~r---rVLvGHrAaVNvVdfd~k--yIVsAS-gDRTikvW~ 346 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLR---RVLVGHRAAVNVVDFDDK--YIVSAS-GDRTIKVWS 346 (499)
T ss_pred HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHH---HHHhhhhhheeeeccccc--eEEEec-CCceEEEEe
Confidence 655 4569999999999999999999999999886654443 667889999999998776 555555 689999999
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCCEEEEEECCCcEEE
Q 002389 847 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTANDIVLCGTETGLIKG 925 (929)
Q Consensus 847 l~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~dg~~LaSgs~DG~I~I 925 (929)
..+++.+.++.+|...|-++.+ .|+++++||+|.+|++||+..|.+++.+++|.. |.++-||.+.|++|+.||+|+|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 424 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEE
Confidence 9999999999999999988876 589999999999999999999999999999966 9999999999999999999999
Q ss_pred eec
Q 002389 926 WIP 928 (929)
Q Consensus 926 Wdi 928 (929)
||.
T Consensus 425 Wdl 427 (499)
T KOG0281|consen 425 WDL 427 (499)
T ss_pred Eec
Confidence 985
No 33
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=8.7e-26 Score=242.77 Aligned_cols=273 Identities=17% Similarity=0.220 Sum_probs=231.6
Q ss_pred CCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+.|.+.|..+.|- + +.|++|+.|..|++|+....+...+.++.|..++|+++.|.+++.++++++.|+.+++|++...
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 4799999999997 3 5999999999999999998887788899999999999999999999999999999999999988
Q ss_pred eEEEEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEcc
Q 002389 724 KLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~ 799 (929)
+... ...+|.+.|++.. .....+++|+.|.+|+.||+.+ +.+++.....+..|......+++|..|++|++||.+
T Consensus 252 r~~~-TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 252 RLRH-TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhh-hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEecc
Confidence 7543 4446999999753 3334499999999999999984 666666677777777776668889999999999998
Q ss_pred CCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC----CCCeEEEEEecCCCEE
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK----GTTIQAMAVVEDFIYL 875 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h----~~~V~slafSpdg~~L 875 (929)
++...... .. ++.|+++..+.++.-+.+++++ .++.+.|.++..+...+... ....+.+.|||++.|+
T Consensus 331 s~~~~~sv------~~-gg~vtSl~ls~~g~~lLsssRD-dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 331 SADKTRSV------PL-GGRVTSLDLSMDGLELLSSSRD-DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred CCceeeEe------ec-CcceeeEeeccCCeEEeeecCC-CceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 86554332 22 4589999999999998888754 58999999999988777643 2358899999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCC--C-CeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 876 NYNSSASSLQIWLRGTQQKVGRISAG--S-KITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg~~i~tl~~h--~-~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
++||.||.|+||++.++++...+... + .|++++|+ |..+++++.++.+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999998888755 2 49999998 88999999999999994
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1.7e-24 Score=249.16 Aligned_cols=269 Identities=18% Similarity=0.218 Sum_probs=193.4
Q ss_pred hhhhhhhcccccccCc-C--ceeeeccccchhhhhccccceeeccccc--ccccce-ecCCC---------cccceeEEE
Q 002389 576 ERLLACLCIYNYASGK-G--MQKLIRSSEGVRESLRRLSNVTWMAEEL--HKAADY-YLPNI---------SRISCVHTQ 640 (929)
Q Consensus 576 ervLAsLsL~n~~~~~-g--l~~L~~~~e~vi~slr~~k~~~w~a~~~--~kv~~~-~~~~~---------~~~~~~~t~ 640 (929)
...|.+.|+|.+.... + +..+.....-+...+.+.+-..|.-... .++... .++.. ....-.-..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 5567888999988655 3 3334333333444444444455554421 111110 00000 000000011
Q ss_pred EEeecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 641 ILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 641 ~l~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
..+...||+++|....|+ ..+|+++|.|++||+|.+.+..+ +..++||..||+++.|+|.|-|+||||.|++.++|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee--EEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 112245999999999999 34899999999999999999865 66778999999999999999999999999999999
Q ss_pred EccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEE
Q 002389 719 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQEL 796 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iw 796 (929)
..+..... ....+|-+.|.| |.|+..++++||.|.+|++||
T Consensus 521 s~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWD------------------------------------ 563 (707)
T KOG0263|consen 521 STDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWD------------------------------------ 563 (707)
T ss_pred ecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEE------------------------------------
Confidence 98765432 223345554443 455555666666555555555
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~La 876 (929)
+.+|... +++.+|..+|.+++++|++.++++++ +|+.|.+||+.++.++..+.+|++.|.++.||.||..||
T Consensus 564 -v~~G~~V------RiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 564 -VSTGNSV------RIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLA 635 (707)
T ss_pred -cCCCcEE------EEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEE
Confidence 4444332 45578999999999999999999887 889999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCC
Q 002389 877 YNSSASSLQIWLRGT 891 (929)
Q Consensus 877 SgS~DG~I~IWdl~s 891 (929)
+||.|++|++||+..
T Consensus 636 sgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 636 SGGADNSVRLWDLTK 650 (707)
T ss_pred ecCCCCeEEEEEchh
Confidence 999999999999643
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=250.36 Aligned_cols=275 Identities=13% Similarity=0.218 Sum_probs=225.5
Q ss_pred CCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 648 CSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 648 H~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
.+..|..++|++. +++++--.|.|++||.+-+. ++..|.+|.++|..++|+|++..++|||+|..|+||+..+.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 4678999999955 89999999999999999875 4889999999999999999999999999999999999988775
Q ss_pred EEEEEeccCCCeEEeccC--CCEEEEEecCCeEEEEeCC--Cceeeecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEc
Q 002389 726 ELIEVIATKEPIRKLDTY--GKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s~~--g~~L~sgs~Dg~V~IWDl~--~~~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl 798 (929)
. ....+|.+.|+....| -.+|+++|+|.+|+||++. +++..+.+ ++.|.|..|+ ++.+++++-|.+|++||+
T Consensus 86 l-ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 86 L-FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred h-hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 3 3455899999875544 4589999999999999987 56666666 4569999997 566999999999999999
Q ss_pred cCCccceeccc-----------------------ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--E
Q 002389 799 SNNVEREIKAP-----------------------FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--I 853 (929)
Q Consensus 799 ~tg~~~~i~~~-----------------------~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~--i 853 (929)
..-+.+...+. ..+..+|...|+-.++||.....++++ ||..|++|.++..+. +
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-CcceeeEEEeccccceee
Confidence 65332221111 134567888999999999888888776 899999999876543 5
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 854 SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
.+..||.++|.++-|+|....++|.|+|++|+|||+.+.+.+.+++.. .+.+.++.+ .++++.|.+.| +.||.
T Consensus 244 DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFk 319 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFK 319 (1202)
T ss_pred hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEE
Confidence 577899999999999999999999999999999999999999999754 557777655 55666655555 55554
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=222.90 Aligned_cols=277 Identities=14% Similarity=0.114 Sum_probs=210.9
Q ss_pred CCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.|+++|.+++.+++ +++||+.|....+|++.++. ...++.+|++.|+++.|+.+|.+|+||+.+|.|+||+..++.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 89999999999943 89999999999999999986 478899999999999999999999999999999999999988
Q ss_pred EEEEEEeccCCCe-EEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEc
Q 002389 725 LELIEVIATKEPI-RKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAV 798 (929)
Q Consensus 725 ~~~~~~~~h~~~V-~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl 798 (929)
..+........-. ..+.|.+..+++|+.||.+.+|.+.. ..+.+.+ ..++++=.|. +|+ +++|..||+|++||.
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 6555442222222 25778888999999999999999985 3334444 3346666664 777 888999999999999
Q ss_pred cCCccceecccc---------------cccccCCC------------CeEE---------------------EEEcCCce
Q 002389 799 SNNVEREIKAPF---------------KSWRLQSK------------PINS---------------------LVVYKDWL 830 (929)
Q Consensus 799 ~tg~~~~i~~~~---------------~~~~~~~~------------~I~s---------------------l~~~~d~i 830 (929)
.++......... ....+... .+.+ +.++....
T Consensus 220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 988643221100 00000000 0000 00011111
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEE-
Q 002389 831 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLL- 908 (929)
Q Consensus 831 ~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs- 908 (929)
+.++ +.-||+|.|||+....+.+. -.|...|..+.|-+ ..+|++++.||.|+.||.++|++..++.+|.. |.+++
T Consensus 300 L~A~-G~vdG~i~iyD~a~~~~R~~-c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAAC-GSVDGTIAIYDLAASTLRHI-CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhc-ccccceEEEEecccchhhee-ccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 1122 22578999999988775544 45778899999998 88999999999999999999999999999955 88866
Q ss_pred -EcCCEEEEEECCCcEEEeec
Q 002389 909 -TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 909 -~dg~~LaSgs~DG~I~IWdi 928 (929)
++.+.++|+|.|++.+||+.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cCCCcEEEEecCCCeEEEEec
Confidence 56889999999999999975
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=4.9e-24 Score=250.09 Aligned_cols=269 Identities=18% Similarity=0.277 Sum_probs=233.9
Q ss_pred CCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 647 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 647 gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~-l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
.|...+.+..|.++++++|+.|++|++||..++.. +.. +.||.+.|++++|..-+..|++|+.|+++++||..+|.+
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 36788999999999999999999999999998854 444 899999999999987788899999999999999999987
Q ss_pred EEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC--Cceeeec-cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCc
Q 002389 726 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIY-RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~-~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~ 802 (929)
..... +|.+.+.++...+..+++|+.|.+|++|++. ..+..+. +...|.++...++.+++|+.|++|.+||+.+++
T Consensus 284 ~~~l~-gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 284 THSLQ-GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EEEec-CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhce
Confidence 65444 7999999999999999999999999999998 4555666 566799999999999999999999999999765
Q ss_pred cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
.. +...+|...|.++.+.+. ....+++ -|++|++||+.++ +++.++.+|..-+..+.+ .+++|++++.|
T Consensus 363 cl------~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 363 CL------KSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred ee------eeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccc
Confidence 54 445778999999987773 4444444 4689999999999 899999999998866554 68899999999
Q ss_pred CcEEEEECCCCcEEEEEeC-C-CCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 882 SSLQIWLRGTQQKVGRISA-G-SKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 882 G~I~IWdl~sg~~i~tl~~-h-~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
|+|++||..+++++.++.+ | +.|+++++....+++++.||++++||+
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence 9999999999999999999 4 568888887778999999999999985
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=5.6e-23 Score=234.14 Aligned_cols=271 Identities=15% Similarity=0.246 Sum_probs=227.4
Q ss_pred CCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEccCCeE
Q 002389 649 SGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-KTIGVWQMVQRKL 725 (929)
Q Consensus 649 ~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-gtIrIWDl~tg~~ 725 (929)
...|++.+|+.+ .|++|-..|...+|++.... +++.+.-...+|..++|+..|.+|+-|+.. |.+-||+.....
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~--lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs- 341 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN--LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES- 341 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCce--EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-
Confidence 478999999944 89999999999999998774 478887777899999999999999987754 799999998765
Q ss_pred EEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEc
Q 002389 726 ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAV 798 (929)
Q Consensus 726 ~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl 798 (929)
......+|...+.+ ++|+|+++++|+.||.|++||... |..++.. ..+|+.+.|+ .|+ +++.+-||+|+.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 34456678888886 579999999999999999999986 7777765 4579999998 666 889999999999999
Q ss_pred cCCccceeccccccccc-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 799 SNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~-~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
........ +.. ......+++..|.+....+++.+.-.|.+|+.++|+++..+.||.++|.+++|+|+|..|+|
T Consensus 422 kRYrNfRT------ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRNFRT------FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cccceeee------ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 87654322 111 13345678888888887777766678999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECC-CCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 878 NSSASSLQIWLRG-TQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 878 gS~DG~I~IWdl~-sg~~i~tl~~h~~Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
||.|.+|++||+- ....+.+++..+.+..++| +|+-|++++-||.|.+||+
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 9999999999954 4456778887777888775 5999999999999999996
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=220.63 Aligned_cols=270 Identities=18% Similarity=0.216 Sum_probs=225.6
Q ss_pred cCCCCCCEEEEEEe----CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 645 SHKCSGAVTALIYY----KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs----~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
-+||+.+|-.++|+ ++ +|++++.||.=.+-+-+++.. +.+|.||.++|++...+.+-..-+|++.|-+-++||
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35999999999998 44 689999999999999999876 899999999999999988888899999999999999
Q ss_pred ccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCce---eeecc-CCCeEEEEEe--CCEEEEEECCC
Q 002389 720 MVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTL---KDIYR-SKGIKSMSVV--QGKIYIGCMDS 791 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~---~~l~~-~~~V~sla~s--dg~llsgs~Dg 791 (929)
.-+|..... ..|+.-|. +|+.+.+++++|+.+..+++||+++.. ..+.+ ...|+.+.|- |..+++.+.|+
T Consensus 88 a~tgdelhs--f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 88 AVTGDELHS--FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhh--hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 999875333 34555554 588899999999999999999998533 33333 4568888885 66699999999
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
+|++||.+++...... ....+++++..++++.++... +++.|.+||..+-.+++.+.-. ..|.+...+|+
T Consensus 166 tVRLWD~rTgt~v~sL-------~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~ 235 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSL-------EFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPK 235 (334)
T ss_pred ceEEEEeccCcEEEEE-------ecCCCCcceeeccCCCEEEEe--cCceeEEeccccccceeeccCc-cccccccccCC
Confidence 9999999998754321 126789999999998876654 5789999999988877766433 56899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEE-eCC-CCeEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKVGRI-SAG-SKITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i~tl-~~h-~~Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
..++++|++|+.++.||..+|+.+..+ ++| ++|.|+.| +|..-++||.||+|++|.+
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 999999999999999999999999886 676 67999775 4789999999999999975
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=4.8e-24 Score=225.46 Aligned_cols=236 Identities=16% Similarity=0.264 Sum_probs=203.5
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEe
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWD 760 (929)
+.+.+++|.+.|.|+++.|.+++++||+.|++|+|||+.+|++ .....+|...|.. ++....++++++.|+.|+.||
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 4566789999999999999999999999999999999999985 4455678888875 667778999999999999999
Q ss_pred CCC--ceeeecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 761 SSR--TLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 761 l~~--~~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
+.. .++.+.+ -..|.|++.+ .+.+++|+.|.++++||+++... +..+.+|..+|.++.+.+..-..+++
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce------EEEecCCCCcceeEEeecCCCceEEe
Confidence 983 3344444 3569999997 77799999999999999998443 34567899999999998766556666
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc-CCE
Q 002389 836 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA-NDI 913 (929)
Q Consensus 836 S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d-g~~ 913 (929)
| .|++|++||+..++...++..|...|++++.+|....+|++|.|+ |+-|++..|..+..+.+|.. |++++.+ ..+
T Consensus 296 S-~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 296 S-HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred c-CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCce
Confidence 5 789999999999999999999999999999999999999998775 99999999999999999977 8889876 669
Q ss_pred EEEEECCCcEEEee
Q 002389 914 VLCGTETGLIKGWI 927 (929)
Q Consensus 914 LaSgs~DG~I~IWd 927 (929)
+++|++.|.+..||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 99999999999998
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=3.3e-22 Score=220.57 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=214.5
Q ss_pred CCCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
||+..|+++.|-+ =+++||+.|++|.+|+-..-+ ...+++.|..-|.|+.|+|||.+++|+|.||+|.+||-.+|
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 9999999999973 389999999999999876543 35678899999999999999999999999999999999998
Q ss_pred eEEEEEE--eccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--CceeeeccCC----CeEEEEEeCCEEEEEECCCcE
Q 002389 724 KLELIEV--IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSK----GIKSMSVVQGKIYIGCMDSSI 793 (929)
Q Consensus 724 ~~~~~~~--~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~----~V~sla~sdg~llsgs~Dg~I 793 (929)
+...... ..|++.|.+ |+|++..+++++.|.+++|||+. ...+++.-.. ....+-|.++.+++.+-+|++
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 8654433 378888985 67999999999999999999987 3444444333 333455668899999999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-------------------------
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH------------------------- 848 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~------------------------- 848 (929)
.+++...+.. .+...+|.+.|+++..++++.++.+.+ .||.|.-||..
T Consensus 303 n~ln~~d~~~------~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 303 NYLNPSDPSV------LKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EEecccCCCh------hheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 9999987552 245578888888888888777766655 33444444432
Q ss_pred --------------------------------------------------------------------------------
Q 002389 849 -------------------------------------------------------------------------------- 848 (929)
Q Consensus 849 -------------------------------------------------------------------------------- 848 (929)
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence
Q ss_pred ------------------CCCe--EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE-EEEeCC-CCeEE
Q 002389 849 ------------------RKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV-GRISAG-SKITS 906 (929)
Q Consensus 849 ------------------~~~~--i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i-~tl~~h-~~Vts 906 (929)
.... ......|.++|++++||||+.|||+|...+.+.+||+.+.+.. ..+.-| .+|++
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 2111 1123346788999999999999999999999999998887763 233335 45999
Q ss_pred EEEc--CCEEEEEECCCcEEEeec
Q 002389 907 LLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 907 vs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++|+ ..+++||+-|..|.||++
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEc
Confidence 9988 459999999999999985
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=236.98 Aligned_cols=271 Identities=13% Similarity=0.172 Sum_probs=230.7
Q ss_pred CCCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 646 HKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.||...|.+++++ ++.++..+..+.|+||+..+.++ ++++.. +.+.+..|.|.++++++|...|.+.++|+....
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcce--eEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 3899999999999 55555566678999999999876 777754 378999999999999999999999999998876
Q ss_pred EEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCC------c---------eeeeccCCCeEEEEEe-CCE-EE
Q 002389 725 LELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSR------T---------LKDIYRSKGIKSMSVV-QGK-IY 785 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~------~---------~~~l~~~~~V~sla~s-dg~-ll 785 (929)
. +.....|.+.+.++ .|++..+++|+.|.+|++||..- . .+++.-...|.|+.++ ||+ ++
T Consensus 446 l-~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 446 L-VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred h-hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 4 33344789988864 69999999999999999999651 1 1222235668899998 888 55
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 865 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~s 865 (929)
++--|.++++|-+.+-+-. -...+|.-||.++..+|+...++++| .|++|++|-++-|.+.+.+.+|.+.|.+
T Consensus 525 VsLLdnTVkVyflDtlKFf------lsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFF------LSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred EEeccCeEEEEEecceeee------eeecccccceeEEeccCCcCeEEecc-CCCceEEeccccchhhhhhhcccCceeE
Confidence 5678999999999873221 34578999999999999999999888 7789999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEE--EcCCEEEEEECCCcEEEeec
Q 002389 866 MAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 866 lafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs--~dg~~LaSgs~DG~I~IWdi 928 (929)
+.|-|+..++.++|.|+.|+-||-.+.+.+.++.+|. .|+|++ ++|.+++++|.|.+|++|..
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 9999999999999999999999999999999999995 499865 67999999999999999963
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=6.7e-23 Score=209.64 Aligned_cols=274 Identities=14% Similarity=0.160 Sum_probs=227.2
Q ss_pred CCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~t 722 (929)
++|...|.+|+|+ +| .+++|+.|+++.+|++...+...-....+|.+.|-.++|+|.. ..+++++.|++|++||++.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 4899999999998 44 8999999999999999987544445568999999999999854 4599999999999999999
Q ss_pred CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEc
Q 002389 723 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAV 798 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl 798 (929)
+++.........+-..+++|+|.++++++.|..|.+.|.++ ..........+.-+.|. ++. ++.....|.|.|...
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 98766555555555568999999999999999999999873 23333334557777776 444 555556699999988
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg 878 (929)
.. ..|+...+.|...-.++.+.|++.+.+.++ .|..+.+||++.-.+.+.+..+.-+|+.+.||.||++||+|
T Consensus 177 ps------Lkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 177 PS------LKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred cc------cccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 75 234455677887788899999999998877 67899999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCC--EEEEEECC---------CcEEEe
Q 002389 879 SSASSLQIWLRGTQQKVGRISAGSKITSLLTAND--IVLCGTET---------GLIKGW 926 (929)
Q Consensus 879 S~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~--~LaSgs~D---------G~I~IW 926 (929)
|+|..|-|=++++|..+..++..++-.+++|+++ +|+.+++| |.|++|
T Consensus 250 SEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred CccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999999999999999976 67766665 567765
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=4.4e-24 Score=229.32 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=200.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC-Cceee
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLKD 767 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~ 767 (929)
..+|..+.|.|+|+.|++|+..|.+.+|+..+-. .......|+.+|++ ++.++.++++|+.+|.|++|+.+ +..+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 3579999999999999999999999999974322 12234479999986 57899999999999999999988 34444
Q ss_pred ecc-C-CCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 002389 768 IYR-S-KGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 843 (929)
Q Consensus 768 l~~-~-~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~ 843 (929)
+.. + ..|++++|+ |.++++++.||+|++||....... +.+.+|+-.+.++++||..-.+++++ +|+.|+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee------~vL~GHgwdVksvdWHP~kgLiasgs-kDnlVK 247 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE------RVLRGHGWDVKSVDWHPTKGLIASGS-KDNLVK 247 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh------heeccCCCCcceeccCCccceeEEcc-CCceeE
Confidence 443 2 569999997 778999999999999999875543 34478999999999999998888888 777999
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc---CCEEEEEEC
Q 002389 844 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA---NDIVLCGTE 919 (929)
Q Consensus 844 IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d---g~~LaSgs~ 919 (929)
+||.+++.++.++.+|...|..+.|+|++.+|+|+|.|..++++|+++.+.++++++|.. |+++.|+ ..+|.+|+.
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 999999999999999999999999999999999999999999999999999999999965 9999987 679999999
Q ss_pred CCcEEEeec
Q 002389 920 TGLIKGWIP 928 (929)
Q Consensus 920 DG~I~IWdi 928 (929)
||.|..|..
T Consensus 328 Dgsvvh~~v 336 (464)
T KOG0284|consen 328 DGSVVHWVV 336 (464)
T ss_pred CCceEEEec
Confidence 999999964
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.8e-23 Score=220.68 Aligned_cols=258 Identities=17% Similarity=0.195 Sum_probs=214.2
Q ss_pred EEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--e
Q 002389 663 CSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--L 740 (929)
Q Consensus 663 aSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~ 740 (929)
+.|.-.|..+..+.--..+...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+|++ .....+|...+.. |
T Consensus 80 ~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-e~~LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 80 IAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-ERSLRGHTDSVFDISF 158 (406)
T ss_pred ccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-hhhhhccccceeEEEE
Confidence 333333333333333333334677889999999999999999999999999999999999986 4455578888875 5
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCc---eeeecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccc
Q 002389 741 DTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR 814 (929)
Q Consensus 741 s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~ 814 (929)
+..|.++++++.|-.+++||..+. .+...+ ...|.++.|- ++.+++++.|.+|+.|++.+|-... .+.
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~------t~~ 232 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK------TFP 232 (406)
T ss_pred ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE------ecc
Confidence 677889999999999999999853 333333 4568888884 6679999999999999999987654 346
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC---------------CCEEEEEe
Q 002389 815 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED---------------FIYLNYNS 879 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd---------------g~~LaSgS 879 (929)
+|...+..+..+.|+...++.+ .|.++++|-..++.+...+..|..+|.+++|.|. ++++.+++
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s-~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCS-NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred CchHhEEEEEecCCeeEEEecC-CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 6788999999999999999887 7889999999999988999999999999999652 35999999
Q ss_pred CCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 880 SASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.|++|++||+.+|.++.++.+| +.|.+++|+ |++|+++.+|+++++||.
T Consensus 312 rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 9999999999999999999999 559999987 999999999999999985
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-22 Score=204.01 Aligned_cols=271 Identities=20% Similarity=0.187 Sum_probs=216.3
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.+||+.+++.|.|+ +++|+|++.|.++.||-...++ .+.++.||+++|+|+..+.+.++++||+.|.++++||+.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 45899999999999 6699999999999999887775 3899999999999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCCeE--EeccCCCEEEEEec-----CCeEEEEeCCCc---------eeee-ccCCCeEEEEEe--CCE
Q 002389 723 RKLELIEVIATKEPIR--KLDTYGKTIFASTQ-----GHRMKVIDSSRT---------LKDI-YRSKGIKSMSVV--QGK 783 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~-----Dg~V~IWDl~~~---------~~~l-~~~~~V~sla~s--dg~ 783 (929)
|++..... ...+|. .|+++|++++..+. .+.|.++|++.. ...+ .+.+.++.+-|. +..
T Consensus 84 Gk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 84 GKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 98755443 444554 57889998887754 358999998722 2222 234567777786 555
Q ss_pred EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 002389 784 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 863 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V 863 (929)
+++|..||.|.+||+++|.... ..-..|...|+.++++++..+.++.| .|.+-++||..+-.+++++. ...+|
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v-----~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D~~tl~v~Kty~-te~Pv 234 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELV-----DSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVDVRTLEVLKTYT-TERPV 234 (327)
T ss_pred EEEecCCCcEEEEEcccCceee-----echhhhccccccccccCCcceEEecc-cCccceeeeccceeeEEEee-ecccc
Confidence 9999999999999999975432 22345788999999999999999887 78899999999998888775 34689
Q ss_pred EEEEEecCCCEEEEEeCCCcEEE--------------EECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEe
Q 002389 864 QAMAVVEDFIYLNYNSSASSLQI--------------WLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGW 926 (929)
Q Consensus 864 ~slafSpdg~~LaSgS~DG~I~I--------------Wdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IW 926 (929)
++.+++|...+++.|+.....-| |++-..+.+..+++| ++|++++++ |+..++|+.||.|++.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999998888877764332222 222223457888899 889998865 8899999999999984
No 47
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=221.09 Aligned_cols=267 Identities=14% Similarity=0.238 Sum_probs=202.6
Q ss_pred CCCCCCEEEEEEeCC---EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYYKG---LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~---~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.||.+.|.|++-+++ .++||+.||.|+|||+....+ ..+++.|.+.|..+++.. ..++|+|.|++|+.|.+..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 599999999999965 599999999999999998755 789999999999999976 6699999999999999865
Q ss_pred CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeee-ccCCCeEEEEEe--CCE-EEEEECCCcEEEE
Q 002389 723 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDI-YRSKGIKSMSVV--QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l-~~~~~V~sla~s--dg~-llsgs~Dg~I~iw 796 (929)
. ....+..+..+..++.+...-..++.+..|.|||..+ ....+ ++-..+.++.|+ ... +.+++.|++|.+|
T Consensus 139 ~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 139 P---PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred C---cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 3 2223333444455554333323333445799999873 33333 345678999997 233 5667799999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEE
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
|++++....-. ...-.-+.++++|.....++.+ +|..++.||++. ...+....+|...|.++.|||.|+-+
T Consensus 216 D~R~~~Pl~KV-------i~~mRTN~IswnPeafnF~~a~-ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 216 DLRQASPLKKV-------ILTMRTNTICWNPEAFNFVAAN-EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ecccCCcccee-------eeeccccceecCccccceeecc-ccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 99986542210 0123446788889655555544 889999999765 45677888999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 876 NYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
++||.|.+|+||....+..--.+... ..|.|+.|+ .+++++||+|+.|++|.
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999998877654333222 348998886 78999999999999997
No 48
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=5.4e-22 Score=224.90 Aligned_cols=268 Identities=16% Similarity=0.223 Sum_probs=222.6
Q ss_pred CCCCCCEEEEEEeCC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEE-EEEcC-CCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYYKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLFE-PGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vts-lafsp-dg~~LaSgs~DgtIrIWDl~t 722 (929)
.||+..|..+++.++ .+++||.||++++|+-..+.......+.+|.+.|.+ +++.+ ++-.+++|+.|++|.+|...+
T Consensus 11 ~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~ 90 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ 90 (745)
T ss_pred ccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC
Confidence 499999999999854 799999999999999988776666778899998887 88886 444599999999999999987
Q ss_pred CeEEEEEEeccCCCeEEecc-CCCEEEEEecCCeEEEEeCCCceeeeccC-CCeEEEEE-eCCEEEEEECCCcEEEEEcc
Q 002389 723 RKLELIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSSRTLKDIYRS-KGIKSMSV-VQGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~-~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~-~~V~sla~-sdg~llsgs~Dg~I~iwDl~ 799 (929)
... .....+|+..|.+++. ....+++||+|.++++|........+.+| ..|+.+.. +++.+++|+.|.+|++|.-.
T Consensus 91 ~~P-~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 91 AEP-LYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG 169 (745)
T ss_pred CCc-hhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC
Confidence 763 4456689999999873 33458999999999999998776666654 45888776 47789999999999999874
Q ss_pred CCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
+ . .+.+.+|...|+.+++-++..++-+ + .||.|++|++ ++..+..+.+|+..|+++...+++..++|++
T Consensus 170 ~--~------l~tf~gHtD~VRgL~vl~~~~flSc-s-NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 170 T--L------LKTFSGHTDCVRGLAVLDDSHFLSC-S-NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred c--h------hhhhccchhheeeeEEecCCCeEee-c-CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 3 1 2567899999999999988655443 3 6899999999 6777888999999999999989999999999
Q ss_pred CCCcEEEEECCCCcEEEEEeCCC-CeEEEE-EcCCEEEEEECCCcEEEee
Q 002389 880 SASSLQIWLRGTQQKVGRISAGS-KITSLL-TANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs-~dg~~LaSgs~DG~I~IWd 927 (929)
+|++++||+.. ++.+.+...+ .|+++. +...-|++|++||.||||.
T Consensus 239 EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 239 EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 99999999976 7888888664 588876 3344588999999999996
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=200.72 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=196.4
Q ss_pred eEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccCC-eEEEE--EEeccCCCeEE--eccCCCEEEEEecCCe
Q 002389 682 MLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQR-KLELI--EVIATKEPIRK--LDTYGKTIFASTQGHR 755 (929)
Q Consensus 682 ~~i~~l~gH~~~Vtslafspd-g~~LaSgs~DgtIrIWDl~tg-~~~~~--~~~~h~~~V~s--~s~~g~~L~sgs~Dg~ 755 (929)
..++.+++|++.|..++|+|- |..|+|||.|+.|++|+...+ ...+. ...+|+..|++ ++|+|+++++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346788999999999999998 888999999999999999842 23333 33478888885 6799999999999999
Q ss_pred EEEEeCC----CceeeeccC-CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC
Q 002389 756 MKVIDSS----RTLKDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 828 (929)
Q Consensus 756 V~IWDl~----~~~~~l~~~-~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d 828 (929)
+.||.-. .+..++.++ ..|+|++|+ +|. +++++.|.+|-+|.+..+...... .+++.|.+.|..+.+||.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~---aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI---AVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE---eeeccccccccEEEEcCC
Confidence 9999866 455566654 459999998 665 788999999999999876554442 566789999999999998
Q ss_pred ceEEEEEecCCCeEEEEECC---CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-C-CC
Q 002389 829 WLYSASSSVEGSNIKEWRRH---RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-G-SK 903 (929)
Q Consensus 829 ~i~~~s~S~dDgtI~IWDl~---~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~-h-~~ 903 (929)
.-.+++.| -|++|++|+.. .-.+.+++.+|...|.+++|+|.|..|++++.|++++||... ..+.. | .+
T Consensus 162 ~dlL~S~S-YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCS-YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRA 235 (312)
T ss_pred cceeEEec-cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccc
Confidence 88888877 56799999865 345788999999999999999999999999999999999854 22332 3 34
Q ss_pred eEEEEEcCCEEEEEECCCcEEEee
Q 002389 904 ITSLLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 904 Vtsvs~dg~~LaSgs~DG~I~IWd 927 (929)
+..++|+...|++|+.|+.|++|.
T Consensus 236 ~Y~v~W~~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 236 LYDVPWDNGVIASGGGDDAIRLFK 259 (312)
T ss_pred eEeeeecccceEeccCCCEEEEEE
Confidence 888999978999999999999986
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=8.1e-23 Score=213.15 Aligned_cols=276 Identities=15% Similarity=0.160 Sum_probs=221.4
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEE------EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVW------DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~------~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
|....+-|..|+ +++|++|+.||.|.+||..+++.+.-. .+--|.++|.|+.|+.|..+++||+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 556778899999 349999999999999999988653111 233578899999999999999999999999999
Q ss_pred EccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--CceeeeccCC-CeEEEEEe-CCE-EEEEECCC
Q 002389 719 QMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSK-GIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~-~V~sla~s-dg~-llsgs~Dg 791 (929)
.+.+|.+.......|...|++ |+.++..+++++.|.++++.-+. ++++.+.++. .|+...|. +|. +++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999877777788888886 67889999999999999999877 5677777654 58888887 666 99999999
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEec-C--CCCCeEEEE
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAP-E--KGTTIQAMA 867 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~~i~~l~-~--h~~~V~sla 867 (929)
+|++|+..+++......+ .+...+|+++..-|... ..+.+ ...+++++.++.+.. ++.+. | ..+...+.+
T Consensus 371 tvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVC-Nrsntv~imn~qGQv-VrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVC-NRSNTVYIMNMQGQV-VRSFSSGKREGGDFINAI 444 (508)
T ss_pred cEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEE-cCCCeEEEEeccceE-EeeeccCCccCCceEEEE
Confidence 999999998776544322 23456777777665432 22222 256789999987654 44443 2 234667778
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEE--EcCCEEEEEECCCcEEEeec
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs--~dg~~LaSgs~DG~I~IWdi 928 (929)
.||.|.++.+.++|+.++.|...+|+.-.++..|.+ |..++ |+.+.|++-+.||.+++|.+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 999999999999999999999999999999999966 77777 45679999999999999975
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=3.9e-21 Score=203.82 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=193.2
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCC
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
.++++|.++|++++|+|+++++++++.||.+++|++.+++.. .....|...+. .+.++++.+++++.+|.+++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 457799999999999999999999999999999999887633 33445666664 466788899999999999999998
Q ss_pred C--ceeeeccC-CCeEEEEEe-CCEEEE-EECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 763 R--TLKDIYRS-KGIKSMSVV-QGKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 763 ~--~~~~l~~~-~~V~sla~s-dg~lls-gs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
. ....+..+ ..+.++.+. ++.+++ ++.++.+.+||+.+++... .+..+...+..+.+++++.+.++.+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~- 154 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT------TLRGHTDWVNSVAFSPDGTFVASSS- 154 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE------EeccCCCcEEEEEEcCcCCEEEEEc-
Confidence 5 34444443 469999997 555554 5559999999998654332 2345677899999999877766654
Q ss_pred CCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEE
Q 002389 838 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIV 914 (929)
Q Consensus 838 dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~L 914 (929)
.++.+++||.+.+.....+..|...|.++.|+|+++.+++++.||.|++||..+++.+..+..|. .|.++.|+ +.++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 58899999999888888888999899999999999999999999999999999999999887774 69998887 4678
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
++++.||.|++|++
T Consensus 235 ~~~~~~~~i~i~~~ 248 (289)
T cd00200 235 ASGSEDGTIRVWDL 248 (289)
T ss_pred EEEcCCCcEEEEEc
Confidence 88887999999985
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=229.89 Aligned_cols=253 Identities=17% Similarity=0.245 Sum_probs=206.6
Q ss_pred ccceeEEEEEee-cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 002389 633 RISCVHTQILEA-SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG 709 (929)
Q Consensus 633 ~~~~~~t~~l~~-~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSg 709 (929)
.|.+...+.... ..||.+.|+++++. ++++++|+.|.+++|||..++.+ .+.+.+|.+.|.++.. .+.++++|
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C--~~~l~gh~stv~~~~~--~~~~~~sg 307 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC--THSLQGHTSSVRCLTI--DPFLLVSG 307 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--EEEecCCCceEEEEEc--cCceEeec
Confidence 345555555555 66999999999998 77999999999999999999976 7889999999999986 44568999
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC--CceeeeccC-CCeEEEEEeC-CEEE
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRS-KGIKSMSVVQ-GKIY 785 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~-~~V~sla~sd-g~ll 785 (929)
+.|.+|++|++.++.+..... +|..+|.++..++..+++|+.|++|++||.. +++..+.++ ..|+++.+.. ..++
T Consensus 308 s~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~ 386 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLL 386 (537)
T ss_pred cCCceEEEEeccCcceEEEec-cccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEE
Confidence 999999999999887544333 3999999999999999999999999999988 566666664 4699998876 7899
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCCCeE
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQ 864 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-h~~~V~ 864 (929)
+|+.|++|++||+.+.. .....+.+|...+..+..... ..++.+ -|++|++||...+.+...+.+ |...|.
T Consensus 387 Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~--~Lvs~~-aD~~Ik~WD~~~~~~~~~~~~~~~~~v~ 458 (537)
T KOG0274|consen 387 SGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDN--FLVSSS-ADGTIKLWDAEEGECLRTLEGRHVGGVS 458 (537)
T ss_pred eeeeccceEeecCCchh-----hhhhhhcCCcccccccccccc--eeEecc-ccccEEEeecccCceeeeeccCCcccEE
Confidence 99999999999999862 112445666776755554433 334443 578999999999999999988 678888
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q 002389 865 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 865 slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~ 900 (929)
.+++. ...+++++.||++++||+++++.++.+-.
T Consensus 459 ~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 459 ALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred EeecC--cceEEEEecCCeeEEEecccCchhhhhhh
Confidence 88876 56788888999999999999999887743
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=4.5e-21 Score=239.46 Aligned_cols=237 Identities=18% Similarity=0.219 Sum_probs=187.0
Q ss_pred CCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCC
Q 002389 648 CSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 648 H~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~tg 723 (929)
+...|.+++|+ +.+|++|+.||+|++||+.+++ .+..+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 35689999997 3589999999999999999874 4778899999999999997 7889999999999999999988
Q ss_pred eEEEEEEeccCCCeEEe---ccCCCEEEEEecCCeEEEEeCCCc---eeeecc-CCCeEEEEEeCC-EEEEEECCCcEEE
Q 002389 724 KLELIEVIATKEPIRKL---DTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVVQG-KIYIGCMDSSIQE 795 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~---s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~~-~~~V~sla~sdg-~llsgs~Dg~I~i 795 (929)
....... +...+.++ .+++..+++|+.||.|++||++.. ...+.. ...|.++.|.++ .+++++.|+.|++
T Consensus 609 ~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 609 VSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred cEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 7543332 33456554 356889999999999999999742 333333 456999999854 5889999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-------------ecCCCCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI-------------APEKGTT 862 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~-------------l~~h~~~ 862 (929)
||+..+.......+...+.+|...+..+.+++++.++++++ .|++|++|+......... ...|...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99975421111122345677888899999999988888877 789999999765432211 1235567
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
|.+++|+|++.++++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999986
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=5.1e-21 Score=218.20 Aligned_cols=273 Identities=22% Similarity=0.289 Sum_probs=212.6
Q ss_pred CCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
..+|+|++-+++ .||.|..||.|+||+..+.. ...++.||..+|+++.|...|..|+|||.|+.|.+||+-... -
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~--~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-G 141 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE--ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-G 141 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCc--eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-e
Confidence 458999999866 57999999999999999773 478899999999999999999999999999999999996543 4
Q ss_pred EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 002389 727 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 727 ~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg 801 (929)
.....+|++.|+. |....+.+++++.|+.|++||+.. +..+... ...++.+++.+..+++++.|+.+.+|++...
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecc
Confidence 5566789998885 445578999999999999999984 4444433 3458888888877899999999999998110
Q ss_pred ccc----------------------e------------------------------------------------------
Q 002389 802 VER----------------------E------------------------------------------------------ 805 (929)
Q Consensus 802 ~~~----------------------~------------------------------------------------------ 805 (929)
... .
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 000 0
Q ss_pred ---------------ecccc---------------------------------------------cccccCCCCeEEEEE
Q 002389 806 ---------------IKAPF---------------------------------------------KSWRLQSKPINSLVV 825 (929)
Q Consensus 806 ---------------i~~~~---------------------------------------------~~~~~~~~~I~sl~~ 825 (929)
++.+. -...+|...|.++.+
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 00000 000112223334444
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-Ce
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KI 904 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~V 904 (929)
+.+....++. .++.+++|+..+.++++++. .+.+.+..|-|.++++++|...|.+.+||+.+...+-++++|. .|
T Consensus 382 S~d~~~~~Sg--a~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 382 SSDSILLASG--AGESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred ecCceeeeec--CCCcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 4444433333 35799999999999998884 4489999999999999999999999999999999999999994 58
Q ss_pred EEEE--EcCCEEEEEECCCcEEEeec
Q 002389 905 TSLL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 905 tsvs--~dg~~LaSgs~DG~I~IWdi 928 (929)
++++ +|++.+++||.|.+|++|+-
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeE
Confidence 8876 67889999999999999983
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-21 Score=224.86 Aligned_cols=244 Identities=16% Similarity=0.235 Sum_probs=203.6
Q ss_pred CCCCCEEEEEEeC--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.|+|..++|++ .+++|||.|-.|+||+.++.++ +.++.||-+.|..+.|++.-.+++|+|+|.||+||+..+++
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEeccccee--hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 8999999999993 4899999999999999998865 89999999999999999999999999999999999999998
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCcee-------------------------------eecc-
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLK-------------------------------DIYR- 770 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~-------------------------------~l~~- 770 (929)
+++. ..+|...|.| |.|..+.++++|-|.+|++||+.+.-+ .+.+
T Consensus 127 ~iav-ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 127 CIAV-LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred eEEE-EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 7654 4478888876 778888999999999999999862100 0111
Q ss_pred CCCeEEEEEeC--CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 771 SKGIKSMSVVQ--GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 771 ~~~V~sla~sd--g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
..+|+-.+|+. .-+++|+.|..|++|.+...+.-++ ....+|...|.++-+||....+++.+ +|++|++||++
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv----DtcrgH~nnVssvlfhp~q~lIlSns-EDksirVwDm~ 280 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----DTCRGHYNNVSSVLFHPHQDLILSNS-EDKSIRVWDMT 280 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceee----hhhhcccCCcceEEecCccceeEecC-CCccEEEEecc
Confidence 23477778874 4588999999999999987554444 45578999999999999888888776 89999999999
Q ss_pred CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 849 RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 849 ~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
....++++....+..+.++.+|..+.+++|- |+-+.||.++.-.+..-+.
T Consensus 281 kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVN 330 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEc
Confidence 9999999988888999999999999888875 7777888776555544433
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=228.29 Aligned_cols=236 Identities=17% Similarity=0.251 Sum_probs=196.6
Q ss_pred CCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|...|++++|+ ++ ++++|+.|++|+|||+.... ..++++++|...|++++|+|+|+.+++|+.|++|+|||++++
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 5899999999999 44 99999999999999994432 458899999999999999999999999999999999999998
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCce----eeecc--CC-CeEEEEEe-CCE-EEEEECCCc
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL----KDIYR--SK-GIKSMSVV-QGK-IYIGCMDSS 792 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~----~~l~~--~~-~V~sla~s-dg~-llsgs~Dg~ 792 (929)
++. ....+|..+|.+ |.++++.+++++.|+.|++||+.+.. ..+.. .. .+.++.|+ ++. +++++.|+.
T Consensus 279 ~~~-~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 279 ECV-RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eEE-EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 754 445578888875 67999999999999999999998544 23333 22 57899997 666 888999999
Q ss_pred EEEEEccCCccceecccccccccCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-CCCeEEEEE
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAV 868 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~---~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h-~~~V~slaf 868 (929)
+++||+..+...... .+|.. ++.+...++++.+..+++ .|+.|++||..++..+..+.+| ...+..+.+
T Consensus 358 ~~~w~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTY------TGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred EEEEEccCCcceeee------cccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 999999986654332 33332 455555577888888877 8899999999999999999999 889999999
Q ss_pred ecCCCEEEEEe--CCCcEEEEECC
Q 002389 869 VEDFIYLNYNS--SASSLQIWLRG 890 (929)
Q Consensus 869 Spdg~~LaSgS--~DG~I~IWdl~ 890 (929)
+|...++++++ .|+.+++|..+
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 78999999754
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.5e-22 Score=213.16 Aligned_cols=235 Identities=18% Similarity=0.231 Sum_probs=184.9
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l-~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.||..+|..+.|| +.++++|+.|..+.+||+.++.. .+.+ .+|...+.+++|.|||..+++|+.|++|..||++.
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchh--hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 3999999999999 44999999999999999999975 3333 34568899999999999999999999999999965
Q ss_pred CeEEEEEEeccC-CCeE--EeccCCCEEEEEecCCeEEEEeCCCce--eeeccCCCeEEEEEe-CCE-EEEEECCCcEEE
Q 002389 723 RKLELIEVIATK-EPIR--KLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 723 g~~~~~~~~~h~-~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~i 795 (929)
..... ..+.. ..|. +++++|+++++.+.|..+++|+..... ..+..+.+|+++..+ +|+ +++.-.+..+++
T Consensus 344 n~~~~--W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 344 NILGN--WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred chhhc--ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 43211 11111 2344 567999999999999999999987432 245567889999999 777 556678999999
Q ss_pred EEccCCccceecccccccccCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-C
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-D 871 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~---~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp-d 871 (929)
||+...... +.+.+|.. .|.+.-...+..+.+++| +|+.|+||+..++.++..+.||...|++++|+| |
T Consensus 422 WDl~e~~lv------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 422 WDLEENKLV------RKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred eecchhhHH------HHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 999853322 33445533 334433344556777766 889999999999999999999999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 002389 872 FIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~s 891 (929)
..++|++|.||+|+||....
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 67889999999999997653
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=1.5e-22 Score=205.49 Aligned_cols=249 Identities=16% Similarity=0.185 Sum_probs=210.6
Q ss_pred CCcccceeEEEEEeecCCCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE
Q 002389 630 NISRISCVHTQILEASHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL 707 (929)
Q Consensus 630 ~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La 707 (929)
+..+..|+.++. ||.+.||+.+.+.+ .-++++.|-+-+|||.-++.. ++.+ .|..-|.+++|+.|.++|+
T Consensus 45 ~g~tgdwigtfe-----ghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf-~hkhivk~~af~~ds~~ll 116 (334)
T KOG0278|consen 45 NGDTGDWIGTFE-----GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSF-EHKHIVKAVAFSQDSNYLL 116 (334)
T ss_pred cCCCCCcEEeee-----ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhh-hhhheeeeEEecccchhhh
Confidence 344667888887 99999999999955 688999999999999998864 6666 7899999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--CceeeeccCCCeEEEEEe-CC
Q 002389 708 SGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVV-QG 782 (929)
Q Consensus 708 Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~V~sla~s-dg 782 (929)
||+.++.+||+|++..+-......+|...|.. |....+.|++.+.|++|++||.+ ...+.+..+..|+++.++ +|
T Consensus 117 tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC
Confidence 99999999999998877666677789888886 45566788888999999999987 466777889999999998 99
Q ss_pred EEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-cCCC
Q 002389 783 KIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKG 860 (929)
Q Consensus 783 ~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l-~~h~ 860 (929)
.+++....+.|.+||..+-.. +..+. ...|.+...+|+....++++ +|..++.||..++..+..+ .+|.
T Consensus 197 ~ilTia~gssV~Fwdaksf~~lKs~k~--------P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 197 RILTIAYGSSVKFWDAKSFGLLKSYKM--------PCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred CEEEEecCceeEEeccccccceeeccC--------ccccccccccCCCceEEecC-cceEEEEEeccCCceeeecccCCC
Confidence 999999999999999987332 22211 34567777888877667665 7889999999999888775 8999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 861 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
++|.++.|+|||...++||.||+|++|....++.-
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999999999997766553
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=197.87 Aligned_cols=236 Identities=14% Similarity=0.157 Sum_probs=193.4
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeC
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
...+.+|+++|..+.|+-||+|.++|+.|++|++|+...|.++. ...+|...|.. .+.++..+++++.|..+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 56778999999999999999999999999999999999887644 34467777774 5678889999999999999999
Q ss_pred C--CceeeeccC-CCeEEEEEeC-CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 762 S--RTLKDIYRS-KGIKSMSVVQ-GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 762 ~--~~~~~l~~~-~~V~sla~sd-g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
+ +..+.+.++ ..|+.+.|.+ .. +++|+.|.++++||.++.....+ +++......|.++......+.. +|
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi----Qildea~D~V~Si~v~~heIva--GS 162 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI----QILDEAKDGVSSIDVAEHEIVA--GS 162 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc----chhhhhcCceeEEEecccEEEe--ec
Confidence 8 455556654 4699999983 33 77899999999999998654443 5566667788888877665543 33
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC----eEE-EEEcC
Q 002389 837 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK----ITS-LLTAN 911 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~----Vts-vs~dg 911 (929)
-||+++.||++.|....-+. ..+|++++|++|++....++-|+++++-|..+|+.+..+++|.. +.| +.-+.
T Consensus 163 -~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred -cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 57999999999998766554 45899999999999999999999999999999999999999933 333 22336
Q ss_pred CEEEEEECCCcEEEeecC
Q 002389 912 DIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 912 ~~LaSgs~DG~I~IWdil 929 (929)
.++++|+.||.|++||.+
T Consensus 240 thV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eeEEeccCCceEEEEEec
Confidence 699999999999999964
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3e-21 Score=201.20 Aligned_cols=266 Identities=14% Similarity=0.211 Sum_probs=200.4
Q ss_pred EeecCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCC-CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 002389 642 LEASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 717 (929)
Q Consensus 642 l~~~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~-~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrI 717 (929)
+++...-++.|.+++|| ++++++||.||+||+|++... ... -.....|.++|.+++|+.||..+++|+.|+.+++
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 33444568899999999 347889999999999999873 322 2455689999999999999999999999999999
Q ss_pred EEccCCeEEEEEEeccCCCeEEecc--C--CCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEeCCEEEEEECCC
Q 002389 718 WQMVQRKLELIEVIATKEPIRKLDT--Y--GKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDS 791 (929)
Q Consensus 718 WDl~tg~~~~~~~~~h~~~V~s~s~--~--g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~sdg~llsgs~Dg 791 (929)
||+.+++. .....|..+|.++.. . -..+++|+.|.+|+.||++. ...++.-..++.++..-..-++.+..+.
T Consensus 99 wDL~S~Q~--~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 99 WDLASGQV--SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred EEccCCCe--eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 99999964 345568888886542 2 23689999999999999984 3444445677777777777788899999
Q ss_pred cEEEEEccCCcc--ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC--CeEEEecCCC-------
Q 002389 792 SIQELAVSNNVE--REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK--PQISIAPEKG------- 860 (929)
Q Consensus 792 ~I~iwDl~tg~~--~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~--~~i~~l~~h~------- 860 (929)
.|.+|++.++.. +.+..| -.-.+++++.+++....+-++ -.|.+.+..++.+ ..-.+++-|.
T Consensus 177 ~i~vynL~n~~te~k~~~Sp------Lk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESP------LKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred cEEEEEcCCCcchhhhhcCc------ccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 999999987532 222211 134567777776644334344 3567888877664 2223344443
Q ss_pred --CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEE
Q 002389 861 --TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCG 917 (929)
Q Consensus 861 --~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSg 917 (929)
..|++|+|+|....|+|.|.||+..+||.+....+.+.+.| .+|++.+|+ |.+++.+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 25788999999999999999999999999888888888877 559998887 7776644
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.6e-21 Score=226.67 Aligned_cols=239 Identities=17% Similarity=0.208 Sum_probs=187.5
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCC--------------------------------CC------------
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK--------------------------------QS------------ 680 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~--------------------------------~~------------ 680 (929)
+|.+.|+++.|+ +| |||+||.||.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 899999999999 55 999999999999998765 00
Q ss_pred --------------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec--c-C
Q 002389 681 --------------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--T-Y 743 (929)
Q Consensus 681 --------------~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s--~-~ 743 (929)
.++++.+.||.+.|.++.|+.+ ++|+|+|.|+|||+|++...+ |.....|.+.|+|+. | |
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--CL~~F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--CLKVFSHNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc--eeeEEecCCeeEEEEecccC
Confidence 0255677899999999999865 589999999999999998765 455667999999854 3 5
Q ss_pred CCEEEEEecCCeEEEEeCCCceeeecc--CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCcccee---cccccccccC
Q 002389 744 GKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREI---KAPFKSWRLQ 816 (929)
Q Consensus 744 g~~L~sgs~Dg~V~IWDl~~~~~~l~~--~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i---~~~~~~~~~~ 816 (929)
.+++++|+-||.+++|++.......+. ..-|++++|. ||+ .++|+.+|.+++|+....+...- ... ..-+..
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~-~~Kk~~ 500 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH-NKKKKQ 500 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec-cCcccc
Confidence 679999999999999999865555444 4569999996 888 77899999999999987543211 000 000122
Q ss_pred CCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 817 SKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 817 ~~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~--~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
...|+.+++.|... .+++. .|..|+|||.+...++..++|+.. .=....|+.||++|++|++|..|+||+...
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CceeeeeEecCCCCCeEEEec--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 34899999997655 44443 688999999988888888887644 234567889999999999999999999643
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.7e-21 Score=212.82 Aligned_cols=283 Identities=12% Similarity=0.122 Sum_probs=220.9
Q ss_pred ccceeecccccccccceecCCCcccceeEEEEEeecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEe
Q 002389 610 LSNVTWMAEELHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDV 687 (929)
Q Consensus 610 ~k~~~w~a~~~~kv~~~~~~~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l 687 (929)
.+.+..++.+.--+...|.+..+.|+.-.....+..+-.+-||++..|- .+++++|+.|..|+||+..+.+ .+..|
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e--kV~~F 93 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE--KVKTF 93 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce--eeEEe
Confidence 4455566665544444555554445422222222223456789999997 6799999999999999999985 48999
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe--cc-CCCEEEEEecCCeEEEEeCCCc
Q 002389 688 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DT-YGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~-~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
.+|.+-|.|++.+|..++++|+|+|-+|++||.+.+-.......+|...|.++ .| +.+.+++++-|++|++|.+...
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 99999999999999999999999999999999987644445566888888764 44 5669999999999999999853
Q ss_pred --eeeecc-CCCeEEEEEe-CC---EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 765 --LKDIYR-SKGIKSMSVV-QG---KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 765 --~~~l~~-~~~V~sla~s-dg---~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
..++.+ .++|+|+.+- .| .+++|+.|..+++||..+.... +...+|...|..+.+||.....+++|
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV------~TLeGHt~Nvs~v~fhp~lpiiisgs- 246 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV------QTLEGHTNNVSFVFFHPELPIIISGS- 246 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH------HHhhcccccceEEEecCCCcEEEEec-
Confidence 334444 5679999985 33 4999999999999999985543 45688999999999999999888887
Q ss_pred CCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Q 002389 838 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS 902 (929)
Q Consensus 838 dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~ 902 (929)
+||+++||+..+-+...++.-....|++++-.+.+..++.|...|.|. ..+...++..++...+
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~~g 310 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDSNG 310 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecCCc
Confidence 899999999999888888877788999999999988999998777654 4555556655555444
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=6.6e-21 Score=203.61 Aligned_cols=246 Identities=15% Similarity=0.221 Sum_probs=199.8
Q ss_pred ceeEEEEEeecCCCCCCEEEEEEe--CC---EEEEEECCCeEEEEECCCCCee--EEEEeccCCCcEEEEEEcCCCCEEE
Q 002389 635 SCVHTQILEASHKCSGAVTALIYY--KG---LLCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGESLL 707 (929)
Q Consensus 635 ~~~~t~~l~~~~gH~~~Vtsl~fs--~~---~LaSGs~DGtIrIWD~~~~~~~--~i~~l~gH~~~Vtslafspdg~~La 707 (929)
.+.++.. ||.++|.+++|. +. .++++|.|.++++|..+.+... .+..-+||..+|.++...++|.+++
T Consensus 135 k~~~~~~-----Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~ 209 (423)
T KOG0313|consen 135 KSIKTIV-----GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFC 209 (423)
T ss_pred ceEEEEe-----cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEE
Confidence 3555555 999999999996 33 6999999999999999876532 2233359999999999999999999
Q ss_pred EEeCCCeEEEEEccCCe------------------------EEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCC
Q 002389 708 SGSADKTIGVWQMVQRK------------------------LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 708 Sgs~DgtIrIWDl~tg~------------------------~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
|||.|.+++||+..+.. .......+|..+|.++. ++...+++++.|.+|+.||+.
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee
Confidence 99999999999932110 01334457888888754 346789999999999999987
Q ss_pred --CceeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC
Q 002389 763 --RTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 838 (929)
Q Consensus 763 --~~~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d 838 (929)
+....+..++.+.|+.++ ...+++|+.|..+++||.+++....+. ..+.+|...|.++.++|..-+.+...+.
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~---~s~~gH~nwVssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS---QSLIGHKNWVSSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE---EeeecchhhhhheecCCCCceEEEEEec
Confidence 566677778899999997 344888999999999999987654443 5667899999999999987765555558
Q ss_pred CCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 839 GSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 839 DgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
|+++++||.+... .+..+.+|.+.|.++.|. ++.+|++||.|++|+|+..
T Consensus 367 D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 367 DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 8999999987765 788999999999999997 5778999999999999864
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=8.5e-21 Score=197.70 Aligned_cols=238 Identities=12% Similarity=0.171 Sum_probs=187.1
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEe
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWD 760 (929)
++..+.+|++.|+.+.|+|+|.+|+|||.|..|.+|++.....-.....+|++.|.. +..+++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455678999999999999999999999999999999975433333445589999985 578999999999999999999
Q ss_pred CCCc--eeeeccCC-CeEEEEEe-CC-E-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEE
Q 002389 761 SSRT--LKDIYRSK-GIKSMSVV-QG-K-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 834 (929)
Q Consensus 761 l~~~--~~~l~~~~-~V~sla~s-dg-~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s 834 (929)
.... ......+. -|+++... -| . +.+|+.|+++++||+++....... .....++++.+.....-..+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------ENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-------ccceeEEEEEecccccceee
Confidence 9843 33333333 36666644 33 3 556889999999999974432221 12457788888877666665
Q ss_pred EecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----CcEEEEEeCCCC---e--E
Q 002389 835 SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT----QQKVGRISAGSK---I--T 905 (929)
Q Consensus 835 ~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s----g~~i~tl~~h~~---V--t 905 (929)
+. =|+.|++||++.+....++.||.+.|+.+..+|+|.++.+-+.|.++++||++. ..++..+.+|.. + .
T Consensus 192 gg-Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 192 GG-IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cc-ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 55 467899999999999999999999999999999999999999999999999764 344888888722 2 2
Q ss_pred EE--EEcCCEEEEEECCCcEEEeec
Q 002389 906 SL--LTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 906 sv--s~dg~~LaSgs~DG~I~IWdi 928 (929)
.. +++++.+..|+.|..+++||.
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred eeeccCCCCccccccccceEEEeec
Confidence 23 345789999999999999985
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-19 Score=189.57 Aligned_cols=276 Identities=14% Similarity=0.140 Sum_probs=218.1
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEEccCC
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA--DKTIGVWQMVQR 723 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~--DgtIrIWDl~tg 723 (929)
-.+.|+++.|+ +..+++++.|.++++||..+++. +.++..+.-.|..++|......++.++. |.+||.-++.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 47899999999 44889999999999999999864 7888788888999999887777777766 899999999988
Q ss_pred eEEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCC-CceeeeccCCCeEEEEEe-CCEEEE-EECCCcEEEEEc
Q 002389 724 KLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKGIKSMSVV-QGKIYI-GCMDSSIQELAV 798 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~~~~~V~sla~s-dg~lls-gs~Dg~I~iwDl 798 (929)
+. .....+|+..|.++ +|-++.+++++.|++|++||++ ...+.+.....-...+|. +|-+++ +...+.|++||+
T Consensus 91 ky-lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 91 KY-LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred ce-EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 74 45677999999964 6888999999999999999998 222223333333456676 777554 555559999999
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe---EEEEEecCCCEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI---QAMAVVEDFIYL 875 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V---~slafSpdg~~L 875 (929)
+.-....+... ..-.......+.+.++|++.+++-.. +++.+++.|.-.|.....+.++...- -..+|+||++++
T Consensus 170 Rs~dkgPF~tf-~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 170 RSFDKGPFTTF-SITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred cccCCCCceeE-ccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 87433222100 11123366788999999999877655 67889999998898888887775532 567899999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 876 NYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
++|+.||+|.+|+.++|..+..+.+. +++.++.|++++..-++.+..+-+|-+
T Consensus 248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred EEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 99999999999999999999999984 558889999998888888889999954
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.9e-21 Score=194.25 Aligned_cols=269 Identities=10% Similarity=0.125 Sum_probs=203.9
Q ss_pred EEEEEe---CCEEEEEE-------CCCeEEEEECCCCCe-eEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEc
Q 002389 653 TALIYY---KGLLCSGF-------SDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQM 720 (929)
Q Consensus 653 tsl~fs---~~~LaSGs-------~DGtIrIWD~~~~~~-~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl 720 (929)
.++.|| +++|+.+. ..|++.|-++...+. .....+ .-.+.+..++|+++... +++++.||++++||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 466777 66655443 468999999964332 223333 34678999999997665 889999999999997
Q ss_pred cCCeEEEEEEeccCCCeEEecc---CCCEEEEEecCCeEEEEeCC--CceeeeccCC-CeEEEEEe---CCEEEEEECCC
Q 002389 721 VQRKLELIEVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSS--RTLKDIYRSK-GIKSMSVV---QGKIYIGCMDS 791 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s~s~---~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~-~V~sla~s---dg~llsgs~Dg 791 (929)
............|+..|.++.. .++.+++++.|++|++|+.+ +.+.++.++. .|....|+ .+-+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 6544344445578889998764 45678888999999999987 4566766644 48888886 44588899999
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEec
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V~slafSp 870 (929)
.+++||++....... +..|...+.+..++.-....+..+..|+.|+.||++. ..++..+.+|+-.|+.+.|||
T Consensus 171 ~l~lwdvr~~gk~~~------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMS------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred eEEEEEecCCCceeE------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 999999986432211 2456778888888866555555555789999999865 456778899999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCC-eEEEEEc---CCEEEEEECCCcEEEeec
Q 002389 871 D-FIYLNYNSSASSLQIWLRGTQQ-KVGRISAGSK-ITSLLTA---NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 d-g~~LaSgS~DG~I~IWdl~sg~-~i~tl~~h~~-Vtsvs~d---g~~LaSgs~DG~I~IWdi 928 (929)
. ...|+|++.|-+++|||...+. .+.+...|.. |..+.|+ +..+++.+.|+.++||++
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 5688999999999999987554 4666777766 6667765 789999999999999984
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.4e-21 Score=197.53 Aligned_cols=235 Identities=13% Similarity=0.165 Sum_probs=190.8
Q ss_pred CCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCC
Q 002389 648 CSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 648 H~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg 723 (929)
-++.+..++|+ .+.+++++.||+++|||..... .+++.++.|...|.++.|++..+. ++++|.|++||+|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCC-cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 37789999998 5589999999999999965443 579999999999999999986554 888899999999999877
Q ss_pred eEEEEEEeccCCCeEE--ecc-CCCEEEEEecCCeEEEEeCC--CceeeeccC-CCeEEEEEe--CC-EEEEEECCCcEE
Q 002389 724 KLELIEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSS--RTLKDIYRS-KGIKSMSVV--QG-KIYIGCMDSSIQ 794 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~-~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~-~~V~sla~s--dg-~llsgs~Dg~I~ 794 (929)
+-... ..+|...|.. ++| +++.+++++.|+++++||++ +....+..+ ..+.|+.|+ +. .+++|+.|+.|+
T Consensus 138 ~Sv~T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 138 NSVQT-FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred cceEe-ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 64443 5578888874 565 46789999999999999988 333334444 478999997 43 488899999999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEec-CC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVE-DF 872 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSp-dg 872 (929)
.||++.- +.|.....+|+-.|+.+.++|...-+++..+-|-+++|||.. ....+.+...|+..|..+.||+ ++
T Consensus 217 ~wDir~~-----r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 217 GWDIRNL-----RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDP 291 (311)
T ss_pred EEehhhc-----cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccC
Confidence 9999873 345566688999999999998866544444478899999976 4455677788999999999997 78
Q ss_pred CEEEEEeCCCcEEEEEC
Q 002389 873 IYLNYNSSASSLQIWLR 889 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl 889 (929)
.++|+++.|+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 89999999999999984
No 68
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.1e-20 Score=193.58 Aligned_cols=264 Identities=12% Similarity=0.127 Sum_probs=202.0
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.+.-.+.|++|.|+ .+.|+.+++||++++||+..... ...+ .|..|+.+++|.+ ...+++|+.||.|+.+|+.+
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence 33447889999998 55788888999999999998743 3333 6899999999986 45699999999999999998
Q ss_pred CeEEEEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCCc--eeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEc
Q 002389 723 RKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl 798 (929)
+.. .....|..++.++. +..+.+++|++|++|++||.+.. ...+...+.|.++...++.+++|+.|..+.+||+
T Consensus 85 ~~~--~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 85 GNE--DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred Ccc--eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEc
Confidence 863 34557888999876 44789999999999999999842 3334446689999999999999999999999999
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC----CeEEEecCCC---------CCeEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK----PQISIAPEKG---------TTIQA 865 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~----~~i~~l~~h~---------~~V~s 865 (929)
++...-..... ..-.-.+.+++..|++.-.+..| -+|.|.+=..+.. .....++-|. .+|++
T Consensus 163 Rn~~~~~q~re----S~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 163 RNLDEPFQRRE----SSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred ccccchhhhcc----ccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 88543221111 11144677788777544333333 4677776555443 2233444443 28999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEEC
Q 002389 866 MAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTE 919 (929)
Q Consensus 866 lafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~ 919 (929)
|+|+|-..+++||+.||.|.+||..+.+.+..+... ..|.+++|+ |..||.|++
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999999998888776 458888886 889998875
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=6e-20 Score=195.61 Aligned_cols=232 Identities=14% Similarity=0.198 Sum_probs=183.8
Q ss_pred CCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
||++.|+++.|+ + .+||||+.+|.|+||+..++.. ...+..--+.|.-+.|+|.+..|+.|+.||.+.+|.+.++.
T Consensus 104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred CCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 999999999999 4 4999999999999999999864 45554555678889999999999999999999999998863
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeecc---------------------C--------
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR---------------------S-------- 771 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~---------------------~-------- 771 (929)
.+....+|..++++ |.|+|+.++++..||+|++||.... +..+.. +
T Consensus 182 -~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 182 -LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred -eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 56677789999885 8999999999999999999998621 111110 0
Q ss_pred -----------------------CCeEEEEE---eCC-E-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEE
Q 002389 772 -----------------------KGIKSMSV---VQG-K-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 823 (929)
Q Consensus 772 -----------------------~~V~sla~---sdg-~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl 823 (929)
..+.|+.+ +.. . .++|+-||+|.+||+...+.+.+ ..|...|..+
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-------c~he~~V~~l 333 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-------CEHEDGVTKL 333 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-------ccCCCceEEE
Confidence 00111111 111 1 34567799999999988555433 3467789999
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 824 VVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
.+-+. .++++.+ -+|.|+.||.++|.+..++.||...|.+++++|++++++|+|.|++.+||+..
T Consensus 334 ~w~~t-~~l~t~c-~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLNT-DYLLTAC-ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcCc-chheeec-cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 98883 3333333 47899999999999999999999999999999999999999999999999864
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-19 Score=190.44 Aligned_cols=252 Identities=18% Similarity=0.221 Sum_probs=192.2
Q ss_pred cCCCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~--~LaSgs~DgtIrIWDl~t 722 (929)
.+.|.++|++++.++.++||||.|-+|+|||+.+... +..+-.|.+.|+++.|.++-. +|++|+.||.|.+|+...
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q--lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ--LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhh--hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 4589999999999999999999999999999998753 677889999999999998776 799999999999999877
Q ss_pred CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeeccCCCeEEEEEe-CCEEEEEECCCcEEEEE
Q 002389 723 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELA 797 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwD 797 (929)
..+ .....+|...|+. +.|.++.-++.+.|+.++.||+-+. .....-...-..+.|. .|.-++.+....|-+|.
T Consensus 117 W~~-~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 117 WEL-LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQ 195 (362)
T ss_pred eEE-eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEe
Confidence 642 3344578888875 5688999999999999999997522 1122223334447776 55533334445677887
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE--ecCCCEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV--VEDFIYL 875 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf--Spdg~~L 875 (929)
+.+....... .....+.++.+-......++. +++.|.+||.+...+...+.+|...|.++.+ .|++.||
T Consensus 196 ~d~A~v~~~i-------~~~~r~l~~~~l~~~~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 196 LDNASVFREI-------ENPKRILCATFLDGSELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred cccHhHhhhh-------hccccceeeeecCCceEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 7663321110 012335555555555555544 6789999999999999999999999999985 4789999
Q ss_pred EEEeCCCcEEEEECCCC-----cEEEEEeCCCCeEEEE
Q 002389 876 NYNSSASSLQIWLRGTQ-----QKVGRISAGSKITSLL 908 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg-----~~i~tl~~h~~Vtsvs 908 (929)
+|+|+||.|+|||+... +++..+..+.+++|+.
T Consensus 267 vTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred EEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence 99999999999998765 5677777777788865
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-19 Score=206.48 Aligned_cols=265 Identities=13% Similarity=0.207 Sum_probs=211.8
Q ss_pred EEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc
Q 002389 655 LIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 733 (929)
Q Consensus 655 l~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h 733 (929)
+.|+ .+.++.|. ...|++|+..++....+..+ +.+.|+++.|+++|.+|+.|..+|.|.|||..+.+........|
T Consensus 183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred hhcccCCeEEEEe-cceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 5566 44555554 45799999999875444444 38899999999999999999999999999998776544444458
Q ss_pred CCCeEEeccCCCEEEEEecCCeEEEEeCCCce---eeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceec
Q 002389 734 KEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL---KDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIK 807 (929)
Q Consensus 734 ~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~---~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~ 807 (929)
...|-++++.+..+.+|+.|+.|..+|++... ..+.+ ...|..+.|. |+. +++|+.|+.+.+||.....
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~----- 334 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE----- 334 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----
Confidence 88899999999999999999999999998322 22333 4459999997 665 8889999999999995422
Q ss_pred ccccccccCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE--eCCCc
Q 002389 808 APFKSWRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN--SSASS 883 (929)
Q Consensus 808 ~~~~~~~~~~~~I~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg--S~DG~ 883 (929)
|...+..|...|..++++|- ++++.+++..|+.|++||..++..+.... ....|.++.|++..+-|+++ ..++.
T Consensus 335 -p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 335 -PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred -ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 22445678899999999875 55555566688999999999998877664 44679999999998777654 46789
Q ss_pred EEEEECCCCcEEEEEeCCC-CeEEEE--EcCCEEEEEECCCcEEEeecC
Q 002389 884 LQIWLRGTQQKVGRISAGS-KITSLL--TANDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 884 I~IWdl~sg~~i~tl~~h~-~Vtsvs--~dg~~LaSgs~DG~I~IWdil 929 (929)
|.||+..+.+.+..+.+|. +|..++ +||..+++|+.|.++++|+++
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 9999999999999999994 587766 558899999999999999874
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.1e-20 Score=203.26 Aligned_cols=266 Identities=14% Similarity=0.197 Sum_probs=210.9
Q ss_pred CCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 648 CSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 648 H~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
..++|++++|++ .-+|+.++ -.+.||+..+... ..++....+.|.++.|..||+.|+.|+..|.|+|+|+.+ +
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~--~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV--RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-R 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhh--hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-H
Confidence 357899999994 23444333 4688999987643 556667788999999999999999999999999999654 3
Q ss_pred EEEEEEeccCCCeEE--eccC-CCEEEEEecCCeEEEEeCCCceee--ec-cCCCeEEEEEe--CCE-EEEEECCCcEEE
Q 002389 725 LELIEVIATKEPIRK--LDTY-GKTIFASTQGHRMKVIDSSRTLKD--IY-RSKGIKSMSVV--QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~-g~~L~sgs~Dg~V~IWDl~~~~~~--l~-~~~~V~sla~s--dg~-llsgs~Dg~I~i 795 (929)
........|..|+.. |++. +..+++|++|+.+++||+++.... +. +...|.|.+++ ++. +++|+.||.|++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 334445578888774 5654 456778888899999999965432 22 25569999997 444 888999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCCCE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDFIY 874 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSpdg~~ 874 (929)
||.+....... -..|+.||.++.+-|.+...++.+ |+.+++||+. +++.+.....|...|+|+.+..++..
T Consensus 181 ~DtR~~~~~v~------elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 181 WDTRSLTSRVV------ELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred EEeccCCceeE------EecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence 99987532211 135789999999999987777664 7899999987 55555566669999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEE
Q 002389 875 LNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKG 925 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs--~dg~~LaSgs~DG~I~I 925 (929)
|+|||-|+.|++||+.+.+.+..+.-.++|.+++ ++++.++.|..||.+.+
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 9999999999999999999999999999998866 45789999999998765
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=3.5e-20 Score=193.15 Aligned_cols=276 Identities=18% Similarity=0.267 Sum_probs=214.1
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCC---------------C-CeeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK---------------Q-SAMLVWDVKEHRKAVTSFSLFEPGESLLS 708 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~---------------~-~~~~i~~l~gH~~~Vtslafspdg~~LaS 708 (929)
.|.+++.+-+|+ || +++|||.|..|+|.|++. . .-..++++-.|.++|+++.|+|....|+|
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 799999999999 55 899999999999999971 0 01367888999999999999999999999
Q ss_pred EeCCCeEEEEEccCCeEE-EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeec----cCCCeEEEEE
Q 002389 709 GSADKTIGVWQMVQRKLE-LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIY----RSKGIKSMSV 779 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~-~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~----~~~~V~sla~ 779 (929)
|+.|++|+++|+...... .........+|.+ |.|.|.++++|++..++++||++. +...-. +...|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999999754321 1122334456765 568899999999999999999983 332222 2456999999
Q ss_pred e-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec
Q 002389 780 V-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP 857 (929)
Q Consensus 780 s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~ 857 (929)
+ .|. .++|+.||.|++||-.+++....... ...+..|.+..|..++.|+++.+ .|..+++|.+.++..+..+.
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~----AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN----AHGGSEVCSAVFTKNGKYILSSG-KDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHHHHh----hcCCceeeeEEEccCCeEEeecC-CcceeeeeeecCCceEEEEe
Confidence 8 677 56799999999999887765432210 12367899999999999999876 77899999999999988887
Q ss_pred CCCC-----CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEe-CC-CCeEEEE--EcCCEEEEEECCCcEEEee
Q 002389 858 EKGT-----TIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRIS-AG-SKITSLL--TANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 858 ~h~~-----~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~~i~tl~-~h-~~Vtsvs--~dg~~LaSgs~DG~I~IWd 927 (929)
|-+. .-+...|+....|++.-. ..+.+.-||.+++..+..+. +| +.++.+. |.+..+++++.|.++++|-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 6421 223456777777877655 34789999999988876665 44 4588876 4567899999999999995
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=7.5e-20 Score=201.33 Aligned_cols=277 Identities=17% Similarity=0.185 Sum_probs=204.3
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeE--EEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAML--VWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~--i~~l-~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
.+|+..|.++++. +-.++|||.|.+|+.||+....... .+.+ ......|.++.|++.|..|+..+.....+++|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 3789999999998 4499999999999999998754321 1112 233457999999999999888888899999996
Q ss_pred cCCeEEE-----------EEEeccCCCeEE--eccCC-CEEEEEecCCeEEEEeCCC---ceeeecc----C--CCeEEE
Q 002389 721 VQRKLEL-----------IEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSR---TLKDIYR----S--KGIKSM 777 (929)
Q Consensus 721 ~tg~~~~-----------~~~~~h~~~V~s--~s~~g-~~L~sgs~Dg~V~IWDl~~---~~~~l~~----~--~~V~sl 777 (929)
+...... ....+|...+++ |.|.. ..+++++.||++++||+++ ..+.+.+ . -.+++.
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 5432211 112245555664 55543 4799999999999999984 3333332 1 237788
Q ss_pred EEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccC--CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-Ce
Q 002389 778 SVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ--SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQ 852 (929)
Q Consensus 778 a~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~--~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~~ 852 (929)
+|+ +|+ |++|+.||+|++|+...-... +...+-..| +..|+++.|+.++.++++-+ .|+++++||++.. ++
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRG-FDDTLKVWDLRQFKKP 399 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccc---cceEeeeccCCCCceeEEEeccccchhhhcc-CCCceeeeeccccccc
Confidence 898 787 778999999999998542221 112233444 44899999999999999887 6779999998754 34
Q ss_pred EEEecCCC--CCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEECCC
Q 002389 853 ISIAPEKG--TTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGTETG 921 (929)
Q Consensus 853 i~~l~~h~--~~V~slafSpdg~~LaSgS~------DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~dg~--~LaSgs~DG 921 (929)
+....+-. -+-+.++|||+.+.|++|.. .|++.+||..+.+.++++.-... |..+.|+++ .|+.|+.||
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 44433322 24567899999999999864 47899999999999999886644 888889965 788899999
Q ss_pred cEEEe
Q 002389 922 LIKGW 926 (929)
Q Consensus 922 ~I~IW 926 (929)
+++||
T Consensus 480 ~~~vy 484 (641)
T KOG0772|consen 480 TAHVY 484 (641)
T ss_pred ceEEE
Confidence 99986
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.3e-20 Score=214.81 Aligned_cols=238 Identities=13% Similarity=0.181 Sum_probs=185.6
Q ss_pred EEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-----------------------------------
Q 002389 683 LVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE----------------------------------- 726 (929)
Q Consensus 683 ~i~~l~-gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~----------------------------------- 726 (929)
..+.++ +|.++|+++.|++||+||||||.||.|+||.+......
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 355667 89999999999999999999999999999998650000
Q ss_pred ---------E---------------EEEeccCCCeEEecc-CCCEEEEEecCCeEEEEeCC--CceeeeccCCCeEEEEE
Q 002389 727 ---------L---------------IEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSV 779 (929)
Q Consensus 727 ---------~---------------~~~~~h~~~V~s~s~-~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~V~sla~ 779 (929)
+ ....+|...|..+++ ..++|++++.|.+|++|++. .+++.+.+...|+|++|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 0 001123334444443 34589999999999999988 68999999999999999
Q ss_pred e---CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe
Q 002389 780 V---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA 856 (929)
Q Consensus 780 s---dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l 856 (929)
+ |..+++|+-||.+++|++...+. -.|..-...|+++.+.|+|.+.+.++ -+|.+++|+....+.....
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~V-------v~W~Dl~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKV-------VDWNDLRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCee-------EeehhhhhhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEee
Confidence 6 45599999999999999987432 33454568999999999999988777 5679999999877655433
Q ss_pred cC--C------CCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCC----CeEE-EEEcCCEEEEEECCCc
Q 002389 857 PE--K------GTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRISAGS----KITS-LLTANDIVLCGTETGL 922 (929)
Q Consensus 857 ~~--h------~~~V~slafSpdg-~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~----~Vts-vs~dg~~LaSgs~DG~ 922 (929)
.- | ...|+++.|.|.. ..++..+.|..|+|||..+..++..+++.. .+.+ +..||++|++|++|..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 21 1 2279999998743 356666789999999999989999998763 2444 5568999999999999
Q ss_pred EEEeec
Q 002389 923 IKGWIP 928 (929)
Q Consensus 923 I~IWdi 928 (929)
|+||+.
T Consensus 570 VYiW~~ 575 (712)
T KOG0283|consen 570 VYIWKN 575 (712)
T ss_pred EEEEeC
Confidence 999985
No 76
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=205.23 Aligned_cols=267 Identities=17% Similarity=0.202 Sum_probs=206.3
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEE-----------------------------------EeccCCCcEEEEEEcCCC
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVW-----------------------------------DVKEHRKAVTSFSLFEPG 703 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~-----------------------------------~l~gH~~~Vtslafspdg 703 (929)
.+-+.|+++||+||+||+.......+. ..-+...+|.+++.+|+|
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 346999999999999999762210000 001234579999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccC-----CCEEEEEecCCeEEEEeCCCce---eeecc-CCCe
Q 002389 704 ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-----GKTIFASTQGHRMKVIDSSRTL---KDIYR-SKGI 774 (929)
Q Consensus 704 ~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~-----g~~L~sgs~Dg~V~IWDl~~~~---~~l~~-~~~V 774 (929)
++|++|..-|+++||++..-+. ......|...|.++... .+.+++++.|.-|++||..+.. +++.. ...|
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred ceecccCccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 9999999999999999987553 33455788999987532 4589999999999999998543 44444 4569
Q ss_pred EEEEEe-CC---EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 002389 775 KSMSVV-QG---KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK 850 (929)
Q Consensus 775 ~sla~s-dg---~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~ 850 (929)
+++.|. +| ++++++.|..|++--........+.+. ..-......++.+...|.+.+.+... .|..|+|||+..+
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r-~t~t~~ktTlYDm~Vdp~~k~v~t~c-QDrnirif~i~sg 628 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR-HTQTLSKTTLYDMAVDPTSKLVVTVC-QDRNIRIFDIESG 628 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccc-cccccccceEEEeeeCCCcceEEEEe-cccceEEEecccc
Confidence 999996 33 488899998876544432222211110 11112256788899999999988777 7899999999999
Q ss_pred CeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEE
Q 002389 851 PQISIAPE---KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIK 924 (929)
Q Consensus 851 ~~i~~l~~---h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d--g~~LaSgs~DG~I~ 924 (929)
+..+.+++ |.+....+...|.|.|+++.+.|.++.++|..+|+++.+..+|+. |+.+.|. -++|++.+.||.|.
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 99888875 556778889999999999999999999999999999999999977 9998876 56999999999999
Q ss_pred Eeec
Q 002389 925 GWIP 928 (929)
Q Consensus 925 IWdi 928 (929)
||..
T Consensus 709 vW~l 712 (1080)
T KOG1408|consen 709 VWKL 712 (1080)
T ss_pred EEEC
Confidence 9974
No 77
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=1e-20 Score=207.62 Aligned_cols=238 Identities=16% Similarity=0.262 Sum_probs=195.8
Q ss_pred EEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEE
Q 002389 683 LVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVI 759 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IW 759 (929)
.++++.||+..|+++.|.| .+..|+||+.|+.|+||++....-......+|..+|.. |+.+|..+++++.|+.+++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 5788999999999999999 78889999999999999998733334455689999985 67889999999999999999
Q ss_pred eCC--CceeeeccCCCeEEEEEe-CC--EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEE
Q 002389 760 DSS--RTLKDIYRSKGIKSMSVV-QG--KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 834 (929)
Q Consensus 760 Dl~--~~~~~l~~~~~V~sla~s-dg--~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s 834 (929)
|+. ++...+..+..+.|+.|+ ++ .+++|+.|+.|+.||+++++.. +.+..|-.+|..+.|-+++...++
T Consensus 286 DtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv------qeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 286 DTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV------QEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred ccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH------HHHHhhhhheeeeEEccCCceEee
Confidence 998 455666667889999997 44 3889999999999999998743 455678899999999999999998
Q ss_pred EecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCC----CeEE
Q 002389 835 SSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ---QKVGRISAGS----KITS 906 (929)
Q Consensus 835 ~S~dDgtI~IWDl~~~~~i~~l~-~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg---~~i~tl~~h~----~Vts 906 (929)
.+ +|++++||+......++... .+.....++..+|+++++++-+.|+.|.+|..... ..-..+++|. .+..
T Consensus 360 sS-Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 360 SS-DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred ec-cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 77 89999999988876655433 23346678999999999999999999999985432 2245566772 2333
Q ss_pred -EEEcCCEEEEEECCCcEEEee
Q 002389 907 -LLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 907 -vs~dg~~LaSgs~DG~I~IWd 927 (929)
+++||.+|++|+.||.+.+||
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EEcCCCCeEEeecCCccEEEee
Confidence 667799999999999999997
No 78
>PTZ00420 coronin; Provisional
Probab=99.84 E-value=9.9e-19 Score=206.20 Aligned_cols=225 Identities=17% Similarity=0.150 Sum_probs=163.8
Q ss_pred EEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEecc
Q 002389 664 SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT 742 (929)
Q Consensus 664 SGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd-g~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~ 742 (929)
.|+.+|.|++|+.... ..+..+.+|.++|.+++|+|+ +.+|+||+.||+|++||+.++...... ...++..+.
T Consensus 49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---i~~p~~~L~- 122 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---IKDPQCILK- 122 (568)
T ss_pred CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---cccceEEee-
Confidence 3778899999998765 357889999999999999997 788999999999999999764310000 000011110
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-CCE--EEEEECCCcEEEEEccCCccceecccccccccCCCC
Q 002389 743 YGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 819 (929)
Q Consensus 743 ~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~--llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~ 819 (929)
.+...|.+++|+ ++. +++++.|+.|++||+.++..... +. +...
T Consensus 123 --------------------------gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~------i~-~~~~ 169 (568)
T PTZ00420 123 --------------------------GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ------IN-MPKK 169 (568)
T ss_pred --------------------------cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE------Ee-cCCc
Confidence 122457777776 343 45678888888888887653221 11 3467
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEE-----EEecCCCEEEEEeCCC----cEEEEECC
Q 002389 820 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM-----AVVEDFIYLNYNSSAS----SLQIWLRG 890 (929)
Q Consensus 820 I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sl-----afSpdg~~LaSgS~DG----~I~IWdl~ 890 (929)
|.++.+++++.++++.+ .|+.|++||++++..+..+.+|.+.+... .|++++.+|++++.|+ .|+|||+.
T Consensus 170 V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 99999999998887665 68899999999999998999998765432 3458999999988774 79999988
Q ss_pred C-CcEEEEEeCCCCeEEE--EEc---CCEEEEEECCCcEEEeec
Q 002389 891 T-QQKVGRISAGSKITSL--LTA---NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 891 s-g~~i~tl~~h~~Vtsv--s~d---g~~LaSgs~DG~I~IWdi 928 (929)
+ ++++..+..+.....+ .++ |.++++|+.|++|++|++
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 5 6677766555332222 222 778999999999999985
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=3.1e-19 Score=193.42 Aligned_cols=269 Identities=14% Similarity=0.228 Sum_probs=220.5
Q ss_pred CCCEEEEEEeC--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
...++++...+ +.+++|+.|.++.++|...++ .+..++||...|+.+.|+|+...+++++.|..|+||...... .
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-E 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-C
Confidence 45677777774 689999999999999999875 478899999999999999999999999999999999987655 4
Q ss_pred EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeecc---CCCeEEEEEe-CCE-EEEEECCCcEEEEE
Q 002389 727 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR---SKGIKSMSVV-QGK-IYIGCMDSSIQELA 797 (929)
Q Consensus 727 ~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~---~~~V~sla~s-dg~-llsgs~Dg~I~iwD 797 (929)
......|..+|+. ..+.|+|+++++.|++..+.|++.. +..... .-.+++.+|+ ||. +.+|..||.+++||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 4556679999986 5688999999999999999998843 222222 2248899998 888 55688999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-CCCeEEEEEecCCCEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h-~~~V~slafSpdg~~La 876 (929)
+..+... ..+.+|..+|..+.|+.++.|++... +|+.|++||++..+...++.-. ...|.++.|.+.|.||+
T Consensus 376 lks~~~~------a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 376 LKSQTNV------AKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred cCCcccc------ccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 9986532 34577999999999999999998877 7888999999877666555433 23799999999999999
Q ss_pred EEeCCCcEEEEE--CCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 877 YNSSASSLQIWL--RGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 877 SgS~DG~I~IWd--l~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
.++.|=.|++++ ..+++++..+..|. ..+++.|. .++++++|.|..++++.
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 998887777777 34567788888886 57888886 56999999999998875
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=4.2e-19 Score=211.13 Aligned_cols=279 Identities=15% Similarity=0.147 Sum_probs=215.8
Q ss_pred CCCCEEEEEEe-CC-EEEEEE--CCCeEEEEECCCC----------CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 002389 648 CSGAVTALIYY-KG-LLCSGF--SDGSIKMWDIKKQ----------SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK 713 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs--~DGtIrIWD~~~~----------~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dg 713 (929)
++..|.+|+.+ ++ .++||+ .||.++||+.+.- -.+.+.+...|.+.|+|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 45679999999 44 799999 9999999998631 1234567789999999999999999999999999
Q ss_pred eEEEEEccC----------Ce------E-EEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCC--CceeeeccC-
Q 002389 714 TIGVWQMVQ----------RK------L-ELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRS- 771 (929)
Q Consensus 714 tIrIWDl~t----------g~------~-~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~- 771 (929)
.|.||+... |. . ......+|...|. +++|++.++++++.|++|.+||.. .....+.++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999872 00 0 2234457888887 478899999999999999999987 445555554
Q ss_pred CCeEEEEEe-CCE-EEEEECCCcEEEEEccC-CccceecccccccccCCCCeEEEEEcCCceEEEEEec---CCCeEEEE
Q 002389 772 KGIKSMSVV-QGK-IYIGCMDSSIQELAVSN-NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV---EGSNIKEW 845 (929)
Q Consensus 772 ~~V~sla~s-dg~-llsgs~Dg~I~iwDl~t-g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~---dDgtI~IW 845 (929)
..|..+.|. -|+ +++-+.|++|++|...+ +-.+.+..|... ......+..+.++|++.++++... ...++.|.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh-CCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 459999997 565 77789999999999655 222333222111 122456778899999998876543 22488999
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEec-----CCC------------EEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEE
Q 002389 846 RRHRKPQISIAPEKGTTIQAMAVVE-----DFI------------YLNYNSSASSLQIWLRGTQQKVGRISA--GSKITS 906 (929)
Q Consensus 846 Dl~~~~~i~~l~~h~~~V~slafSp-----dg~------------~LaSgS~DG~I~IWdl~sg~~i~tl~~--h~~Vts 906 (929)
+..+...-..+.||..++.++.|+| +.+ .+|+||.|++|-||.....+++..+.. ...|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 9988888889999999999999987 111 578999999999999988888765542 245999
Q ss_pred EEEc--CCEEEEEECCCcEEEee
Q 002389 907 LLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 907 vs~d--g~~LaSgs~DG~I~IWd 927 (929)
++|+ |-.|+.+|.||+|.+..
T Consensus 331 msWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEE
Confidence 9987 77999999999998864
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.8e-20 Score=209.62 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=216.2
Q ss_pred CCCCCEE---EEEEe---CCEEEEEECCCeEEEEECCCCCee----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 002389 647 KCSGAVT---ALIYY---KGLLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 716 (929)
Q Consensus 647 gH~~~Vt---sl~fs---~~~LaSGs~DGtIrIWD~~~~~~~----~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIr 716 (929)
.|...|. .+..+ +.+|+|||.||.|++|+....... .+..++.|.+.|..+....+|+.|+|+|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444455 34444 347999999999999998764432 3677899999999999999999999999999999
Q ss_pred EEEccCCeEEEE-EEeccCCCeEEec---cCCCEEEEEecCCeEEEEeCCCcee----e--------ec--cCCCeEEEE
Q 002389 717 VWQMVQRKLELI-EVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLK----D--------IY--RSKGIKSMS 778 (929)
Q Consensus 717 IWDl~tg~~~~~-~~~~h~~~V~s~s---~~g~~L~sgs~Dg~V~IWDl~~~~~----~--------l~--~~~~V~sla 778 (929)
+|+...+.-.+. ....|++.|.++. .+...+++|+-|+.|.+||++.... . +. ....|.+++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 999987642233 2347889999865 4677899999999999999983211 1 11 134588888
Q ss_pred Ee-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe
Q 002389 779 VV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA 856 (929)
Q Consensus 779 ~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l 856 (929)
.. .|. +++|+..+.+++||.++++... ...+|...|..+...+++..+++.| .||+|++||+....++.++
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kim------kLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIM------KLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cCCcceEEEecCcccceEEecccccccee------eeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccccceeeeE
Confidence 87 455 7789999999999999865432 2358999999999999999999887 6789999999999999999
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 857 PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-KVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 857 ~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~-~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
..|...|+++..+|+-.++.+|+.||.|+.=|+.+.. ...-++..++|..+..+ .+-+-+++.|+.|+-|.
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999999999999999988843 34444444566665544 34457788888888885
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.9e-19 Score=205.00 Aligned_cols=238 Identities=15% Similarity=0.193 Sum_probs=194.3
Q ss_pred ecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 644 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~g-H~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
+..-+.+.|+++.|+ +++|++|..+|.|.|||....+. +..+.+ |...|-+++|. +..+.+|+.|+.|.++|+
T Consensus 212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 333448999999999 56999999999999999988754 677878 99999999997 567999999999999999
Q ss_pred cCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--Cceeee-ccCCCeEEEEEe---CCEEEE--EECC
Q 002389 721 VQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDI-YRSKGIKSMSVV---QGKIYI--GCMD 790 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l-~~~~~V~sla~s---dg~lls--gs~D 790 (929)
+..+.......+|...|.. +++++.++++|+.|+.+.|||.. .....+ .+...|+.++|. .|-+++ |+.|
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 9876443335578888874 68999999999999999999985 233333 345669999996 555776 4579
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceE-EEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~-~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS 869 (929)
+.|++||..+|..... -..+..|.++.+.+...- +.+.+..++.|.+|+..+...+..+.+|...|..++++
T Consensus 368 ~~i~fwn~~~g~~i~~-------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDS-------VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS 440 (484)
T ss_pred cEEEEEEcCCCcEecc-------cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC
Confidence 9999999998765432 123678999999988743 33333445689999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC
Q 002389 870 EDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 870 pdg~~LaSgS~DG~I~IWdl~sg 892 (929)
|||.++++|+.|.++++|++-+.
T Consensus 441 Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 441 PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999997664
No 83
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=2.8e-18 Score=201.15 Aligned_cols=247 Identities=12% Similarity=0.061 Sum_probs=172.4
Q ss_pred CCEEEEEECCCeEEEEECCCCCee-----------EEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCeE-
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAM-----------LVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKL- 725 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~-----------~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~tg~~- 725 (929)
+..+++++.+..+..|+..++... ....+.+|.++|++++|+| ++++|+||+.|++|++||+.++..
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~ 111 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT 111 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence 345666666666667765443211 0123679999999999999 888999999999999999976532
Q ss_pred -----EEEEEeccCCCeEE--eccCC-CEEEEEecCCeEEEEeCCCc--eeeecc-CCCeEEEEEe-CCE-EEEEECCCc
Q 002389 726 -----ELIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSRT--LKDIYR-SKGIKSMSVV-QGK-IYIGCMDSS 792 (929)
Q Consensus 726 -----~~~~~~~h~~~V~s--~s~~g-~~L~sgs~Dg~V~IWDl~~~--~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~ 792 (929)
......+|...|.+ |+|++ +.+++++.|++|++||+... ...+.. ...|.+++|+ +|. +++++.|+.
T Consensus 112 ~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~ 191 (493)
T PTZ00421 112 QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191 (493)
T ss_pred cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE
Confidence 12344578888876 55554 68999999999999999842 333433 4569999998 665 788999999
Q ss_pred EEEEEccCCccceecccccccccCCCC-eEEEEEcCCceEEEEEe---cCCCeEEEEECCCCC-eEEEecCC-CCCeEEE
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKP-INSLVVYKDWLYSASSS---VEGSNIKEWRRHRKP-QISIAPEK-GTTIQAM 866 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~-I~sl~~~~d~i~~~s~S---~dDgtI~IWDl~~~~-~i~~l~~h-~~~V~sl 866 (929)
|++||++++.... .+..|... ...+.+.++....++.+ ..|+.|++||++... .......+ ...+...
T Consensus 192 IrIwD~rsg~~v~------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 192 LNIIDPRDGTIVS------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIP 265 (493)
T ss_pred EEEEECCCCcEEE------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEE
Confidence 9999999865432 22344332 33455565544443332 247899999987643 34433333 3456667
Q ss_pred EEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcC
Q 002389 867 AVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAG--SKITSLLTAN 911 (929)
Q Consensus 867 afSpdg~~LaSgS-~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~dg 911 (929)
.|++++.++++|+ .||.|++||+.+++.+...... .++.++++.+
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 8899999999887 5999999999999987766543 2355665543
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=6.9e-19 Score=192.31 Aligned_cols=271 Identities=15% Similarity=0.269 Sum_probs=207.9
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCee--EEE-------------Ee-ccCCCcEEEEEEcCCCCEEE
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM--LVW-------------DV-KEHRKAVTSFSLFEPGESLL 707 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~--~i~-------------~l-~gH~~~Vtslafspdg~~La 707 (929)
..|.-+|.|++++ +.+.++++.||+|.=|++.+++.. .+. .- ++|...|.+++.+|||+||+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 4799999999999 339999999999999999877532 000 01 37889999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-C
Q 002389 708 SGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-Q 781 (929)
Q Consensus 708 Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-d 781 (929)
+|+.|..|.||+.++.+... ...+|...|.+ |......+++++.|++|++|+++. ...++.+ ...|..+... .
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred ecCCCceEEEecCcccchhh-cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc
Confidence 99999999999999876432 35689999986 556677899999999999999983 3344444 4558888775 6
Q ss_pred CEEEE-EECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CC
Q 002389 782 GKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EK 859 (929)
Q Consensus 782 g~lls-gs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h 859 (929)
++.++ |+.|+++++|++...... ++.++...+.++++-.+..+.. +| ++|.|.+|++...+++.+.. .|
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesql-------ifrg~~~sidcv~~In~~Hfvs-GS-dnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQL-------IFRGGEGSIDCVAFINDEHFVS-GS-DNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred cceEEeccccceeEEEecccccee-------eeeCCCCCeeeEEEecccceee-cc-CCceEEEeeecccCceeEeeccc
Confidence 66665 669999999999653332 3356677888888887766544 44 78999999987776554332 22
Q ss_pred -----------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCeEEEEEc--CCEEEEE-ECCC
Q 002389 860 -----------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAGSKITSLLTA--NDIVLCG-TETG 921 (929)
Q Consensus 860 -----------~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg----~~i~tl~~h~~Vtsvs~d--g~~LaSg-s~DG 921 (929)
..+|++++..|...++++|+.+|.|++|.+..+ +++..+...+.|++++|. |+.|++| +...
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence 128999999999999999999999999998777 557777777789998875 7755544 4444
Q ss_pred cEEEe
Q 002389 922 LIKGW 926 (929)
Q Consensus 922 ~I~IW 926 (929)
++-=|
T Consensus 449 RlGRW 453 (479)
T KOG0299|consen 449 RLGRW 453 (479)
T ss_pred cccee
Confidence 44334
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=9.4e-18 Score=182.95 Aligned_cols=259 Identities=13% Similarity=0.038 Sum_probs=183.6
Q ss_pred CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCeEEEEEEeccCCCeE
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIR 738 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~L-aSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~ 738 (929)
..++|++.||.|++||..+++. +..+..|. .+.+++|+|+|+.+ ++++.|+.|++||..+++..............
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence 4688999999999999988754 56666554 46789999999986 57778999999999988754433222223334
Q ss_pred EeccCCCEEEEE-ecCCeEEEEeCCCc--eeeeccCCCeEEEEEe-CCE-EEEEECCC-cEEEEEccCCccceecccccc
Q 002389 739 KLDTYGKTIFAS-TQGHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QGK-IYIGCMDS-SIQELAVSNNVEREIKAPFKS 812 (929)
Q Consensus 739 s~s~~g~~L~sg-s~Dg~V~IWDl~~~--~~~l~~~~~V~sla~s-dg~-llsgs~Dg-~I~iwDl~tg~~~~i~~~~~~ 812 (929)
.++++++.++++ +.++.+++||+... ...+.....+.+++++ +|. ++++..++ .+..||..++......
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~----- 153 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV----- 153 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-----
Confidence 678888877665 46899999999742 3333334456788887 666 55555554 4677898765432211
Q ss_pred cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-----C--CeEEEEEecCCCEEEE-EeCCCcE
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-----T--TIQAMAVVEDFIYLNY-NSSASSL 884 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-----~--~V~slafSpdg~~LaS-gS~DG~I 884 (929)
. ....+..+.+++++.+.+..+..++.|++||..+++....+..+. . ....++|+|++++++. .+.++.+
T Consensus 154 -~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 154 -L-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -E-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 0 123446788888887665444457899999999887666543221 1 2356889999998544 4557789
Q ss_pred EEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEE-ECCCcEEEeec
Q 002389 885 QIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCG-TETGLIKGWIP 928 (929)
Q Consensus 885 ~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSg-s~DG~I~IWdi 928 (929)
.+||..+++.+..+..+..+.+++|+ |++|+++ +.+|.|++||+
T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999888777655678887764 7788876 56999999996
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=7.7e-20 Score=197.24 Aligned_cols=234 Identities=13% Similarity=0.201 Sum_probs=189.8
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
|..++|+++.|. ++ ++++++.|+.+++|++.... ...++.||++.|+++.|......+++|+.|.+|+.||+..+.
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchh--hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 678899999998 55 89999999999999999875 478999999999999998877779999999999999998865
Q ss_pred EEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 002389 725 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 800 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~t 800 (929)
+..... ..+.+..+...+..+++|-.|++|++||.+. .......++.|+++..+ +|. +++.+.|.++.++|+++
T Consensus 295 C~kt~l--~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 295 CSKTVL--PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred eecccc--ccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 533322 2333334444477788899999999999873 45555667789999998 665 88899999999999998
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC--CeEEEEEecCCCEEEEE
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~--~V~slafSpdg~~LaSg 878 (929)
........-.... .....+.+.|+|++.|.+++| .||.|+||+..++++...+...+. .|++++|+|.|.+++++
T Consensus 373 ~eI~~~~sA~g~k--~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 373 KEIRQTFSAEGFK--CASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccEEEEeeccccc--cccccceeEECCCCceeeecc-CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 6554332211111 134478899999999999888 678999999999998887776555 49999999999999999
Q ss_pred eCCCcEEEE
Q 002389 879 SSASSLQIW 887 (929)
Q Consensus 879 S~DG~I~IW 887 (929)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.7e-19 Score=184.93 Aligned_cols=274 Identities=11% Similarity=0.210 Sum_probs=208.5
Q ss_pred ecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-
Q 002389 644 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM- 720 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl- 720 (929)
...||.+.||.++.. ...+.+++.|.+.+||.++++.| +.++.||.+.|+++.|++.+..+++++.|++..||..
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 345999999999997 34899999999999999999976 7889999999999999999999999999999999972
Q ss_pred -----cCC--------e-------------------------EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEe
Q 002389 721 -----VQR--------K-------------------------LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 721 -----~tg--------~-------------------------~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWD 760 (929)
... + .......+|...|.+ |-..|+.++++++|.+-.+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 110 0 001122345555554 445788999999999999999
Q ss_pred CCC--ceeeeccCC-CeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 761 SSR--TLKDIYRSK-GIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 761 l~~--~~~~l~~~~-~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
+.. ....+.++. ..+.++-+ ..+ +++.+.|.+.++||++.. ...+.++.+|...+++..|..+... +++
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd~v-VSg 374 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDDRV-VSG 374 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCCce-eec
Confidence 984 233344433 34444444 444 677899999999999852 2334678899999999999877654 334
Q ss_pred ecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-----eCCCC-eEEEE
Q 002389 836 SVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI-----SAGSK-ITSLL 908 (929)
Q Consensus 836 S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl-----~~h~~-Vtsvs 908 (929)
| +|.+|++||+++.. .+.++. ...+++.++.+..++.|+.--.+..|++||++.. .+..+ ++|.. |+|.+
T Consensus 375 S-DDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 S-DDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred C-CCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeee
Confidence 4 89999999987654 344443 4567999999999999999988899999999654 43333 35654 99999
Q ss_pred EcCC----EEEEEECCCcEEEeec
Q 002389 909 TAND----IVLCGTETGLIKGWIP 928 (929)
Q Consensus 909 ~dg~----~LaSgs~DG~I~IWdi 928 (929)
|... -|+++|.|..+.-|++
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccccCcccccccccccceeeeeEe
Confidence 9733 6889999999999986
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=7.5e-19 Score=192.28 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=186.2
Q ss_pred CCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCe--------eEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 002389 647 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA--------MLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKT 714 (929)
Q Consensus 647 gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~--------~~i~~l~gH~~~Vtslafspdg~-~LaSgs~Dgt 714 (929)
-|.+.|+.+.+- +..+++++..+.|.|||..+... .+-..+.||++.=++++|++... +|++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 589999999997 45899999999999999975332 23337889999888999998765 4999999999
Q ss_pred EEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe---CCEEEEEECCC
Q 002389 715 IGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKIYIGCMDS 791 (929)
Q Consensus 715 IrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s---dg~llsgs~Dg 791 (929)
|.+||+...... .....+..-+.. +...|..++|+ ...+.+++.|+
T Consensus 202 i~lwdi~~~~~~----~~~~~p~~~~~~---------------------------h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 202 ICLWDINAESKE----DKVVDPKTIFSG---------------------------HEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred EEEEeccccccC----CccccceEEeec---------------------------CCcceehhhccccchhhheeecCCC
Confidence 999999754321 000001111111 12346666665 33366788888
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEec
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V~slafSp 870 (929)
.+.+||++++.. .+.+.-..|...++++.++|-.-++++.++.|++|.+||+++ ......+.+|...|.++.|||
T Consensus 251 ~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 251 KLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred eEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 888898886421 222455778999999999998777766666899999999865 456789999999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCC--------------cEEEEEeCC-CCeEEEEEcC---CEEEEEECCCcEEEeec
Q 002389 871 D-FIYLNYNSSASSLQIWLRGTQ--------------QKVGRISAG-SKITSLLTAN---DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 d-g~~LaSgS~DG~I~IWdl~sg--------------~~i~tl~~h-~~Vtsvs~dg---~~LaSgs~DG~I~IWdi 928 (929)
+ ...||+++.|+.+.|||+..- ++++...|| ..|..++|++ -.|+|++.|+.++||++
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 5 567899999999999997541 234666677 4599999984 49999999999999987
No 89
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=9.9e-18 Score=197.78 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=145.8
Q ss_pred CCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCe------eEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeE
Q 002389 646 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA------MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTI 715 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~------~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtI 715 (929)
.+|.++|++++|+ +++|+||+.||+|+|||+.++.. .++..+.+|...|.+++|+|++.. ++||+.|++|
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 4899999999998 24899999999999999975421 134567899999999999999987 5799999999
Q ss_pred EEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcE
Q 002389 716 GVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSI 793 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I 793 (929)
++||+++++..... .+...|.+ |+++|..+++++.|+.|++||++
T Consensus 151 rIWDl~tg~~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R------------------------------- 197 (568)
T PTZ00420 151 NIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR------------------------------- 197 (568)
T ss_pred EEEECCCCcEEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC-------------------------------
Confidence 99999988643222 23344553 45666666666666666666654
Q ss_pred EEEEccCCccceecccccccccCCCCeE-----EEEEcCCceEEEEEecCC---CeEEEEECCC-CCeEEEecC--CCCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPIN-----SLVVYKDWLYSASSSVEG---SNIKEWRRHR-KPQISIAPE--KGTT 862 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~-----sl~~~~d~i~~~s~S~dD---gtI~IWDl~~-~~~i~~l~~--h~~~ 862 (929)
++... ..+.+|...+. ...+++++.++++.+.++ ++|++||++. +..+..... +.+.
T Consensus 198 ------sg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 198 ------KQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP 265 (568)
T ss_pred ------CCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc
Confidence 22111 01122222211 112335555555554343 4799999874 444544432 3333
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCeEEEEEcCC
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK--VGRISAGSKITSLLTAND 912 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~--i~tl~~h~~Vtsvs~dg~ 912 (929)
+......++|.++++|+.|++|++|++..+.. +..+....++.+++|.++
T Consensus 266 L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 266 LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 33444456799999999999999999877643 223332244677776644
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.1e-19 Score=201.34 Aligned_cols=237 Identities=17% Similarity=0.245 Sum_probs=183.0
Q ss_pred CCCcEE---EEEEc-CCCCEEEEEeCCCeEEEEEccCCeEE-----EEEEeccCCCeEE--eccCCCEEEEEecCCeEEE
Q 002389 690 HRKAVT---SFSLF-EPGESLLSGSADKTIGVWQMVQRKLE-----LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKV 758 (929)
Q Consensus 690 H~~~Vt---slafs-pdg~~LaSgs~DgtIrIWDl~tg~~~-----~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~I 758 (929)
|...|. .+..+ |++++|+|||.||.|++|++....-. ......|.+.|.. +..+++.+++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 34444 56777999999999999998653321 1222345555554 3577889999999999999
Q ss_pred EeCCCc----eeeecc-CCCeEEEEEe--CCE-EEEEECCCcEEEEEccCCcccee----ccccc-ccccCCCCeEEEEE
Q 002389 759 IDSSRT----LKDIYR-SKGIKSMSVV--QGK-IYIGCMDSSIQELAVSNNVEREI----KAPFK-SWRLQSKPINSLVV 825 (929)
Q Consensus 759 WDl~~~----~~~l~~-~~~V~sla~s--dg~-llsgs~Dg~I~iwDl~tg~~~~i----~~~~~-~~~~~~~~I~sl~~ 825 (929)
|+.... ..++.. ...|+|+++. +.. +++|+-|+.|.+||+.++....+ ..+.. .-.++..++++++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 998743 344444 4569999994 443 77899999999999998743111 01111 22267889999999
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-e
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-I 904 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-V 904 (929)
.+.+...++++ ..+.+++||.+++..+..+.||+..|+.+..++||..++++|+||+|++||+...+++.++..|.. |
T Consensus 180 N~t~t~ivsGg-tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 180 NQTGTIIVSGG-TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred CCcceEEEecC-cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 99987777766 557899999999998888999999999999999999999999999999999999999999999955 8
Q ss_pred EEEEEc--CCEEEEEECCCcEEEee
Q 002389 905 TSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 905 tsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+++..+ =+.+++|+.||.|..=|
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecc
Confidence 887765 45999999999987643
No 91
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=7e-18 Score=197.81 Aligned_cols=220 Identities=14% Similarity=0.167 Sum_probs=161.2
Q ss_pred CCCCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCe-----eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEE
Q 002389 646 HKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIG 716 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~-----~~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIr 716 (929)
.||.++|++++|++ ++|++|+.||+|+|||+.++.. .++..+.+|...|.+++|+|++ +.|+||+.|++|+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 48999999999983 4899999999999999976421 2467889999999999999986 6899999999999
Q ss_pred EEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCC--eEEEEEe--CCEEEEEE
Q 002389 717 VWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKG--IKSMSVV--QGKIYIGC 788 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~--V~sla~s--dg~llsgs 788 (929)
|||+.+++.. ....+|...|.+ |++++..+++++.|++|++||++. ....+..+.. +..+.|. .+.+++++
T Consensus 152 IWDl~tg~~~-~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 152 VWDVERGKAV-EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred EEECCCCeEE-EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence 9999988743 334467888875 678999999999999999999873 2333333322 3344554 34566543
Q ss_pred ----CCCcEEEEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCC
Q 002389 789 ----MDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTT 862 (929)
Q Consensus 789 ----~Dg~I~iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h~~~ 862 (929)
.|+.|++||+++.... ......+ ...+....+++++.+++..+..|+.|++||+.++..+.... .+..+
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p-----~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASP-----YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCc-----eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 4789999999864321 1111222 23344455677776666555568999999999888765543 34557
Q ss_pred eEEEEEecC
Q 002389 863 IQAMAVVED 871 (929)
Q Consensus 863 V~slafSpd 871 (929)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 888888884
No 92
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1e-17 Score=175.22 Aligned_cols=253 Identities=11% Similarity=0.242 Sum_probs=165.5
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCC--CCeeEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVW 718 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~--~~~~~i~~l~gH~~~Vtslafsp--dg~~LaSgs~DgtIrIW 718 (929)
..+|.+-|.++.|+ |.++|||+.|++|+|||.+. ++.......+.|.+.|..+.|.+ -|+.+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 45899999999998 77999999999999999654 33446677899999999999975 58889999999999999
Q ss_pred EccCCe-------E-EEEEEeccCCCeEEe--c--cCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEE
Q 002389 719 QMVQRK-------L-ELIEVIATKEPIRKL--D--TYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYI 786 (929)
Q Consensus 719 Dl~tg~-------~-~~~~~~~h~~~V~s~--s--~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~lls 786 (929)
.-.... . .+......+..|+.+ . ..|-.+++++.||+++||+.-...
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------- 147 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------- 147 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc---------------------
Confidence 753211 1 112222334444432 2 123355555555555555543110
Q ss_pred EECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc---eEEEEEecC----CCeEEEEECCCC----CeEEE
Q 002389 787 GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVE----GSNIKEWRRHRK----PQISI 855 (929)
Q Consensus 787 gs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~---i~~~s~S~d----DgtI~IWDl~~~----~~i~~ 855 (929)
.+.-|.+...-...+.+| ..+..+-.++.+++.. .+++.++.+ -+.++||....+ ..+..
T Consensus 148 -----nLs~W~Lq~Ei~~~~~pp----~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 148 -----NLSQWTLQHEIQNVIDPP----GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred -----ccccchhhhhhhhccCCc----ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 111222211100011111 1223444555555431 122222212 147888875432 24557
Q ss_pred ecCCCCCeEEEEEecC----CCEEEEEeCCCcEEEEECCC--------------------CcEEEEEeCCC-CeEEEEEc
Q 002389 856 APEKGTTIQAMAVVED----FIYLNYNSSASSLQIWLRGT--------------------QQKVGRISAGS-KITSLLTA 910 (929)
Q Consensus 856 l~~h~~~V~slafSpd----g~~LaSgS~DG~I~IWdl~s--------------------g~~i~tl~~h~-~Vtsvs~d 910 (929)
+.+|+.+|++++|.|+ ...||+++.|| |+||++.. -+.+..+..|. +|+.+.|+
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 7899999999999995 45789999999 99999763 12355666775 69999998
Q ss_pred --CCEEEEEECCCcEEEeec
Q 002389 911 --NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 911 --g~~LaSgs~DG~I~IWdi 928 (929)
|.+|.+.|+||+||+|+.
T Consensus 298 mtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeeEEeecCCCceeeehhh
Confidence 999999999999999974
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7.9e-18 Score=176.66 Aligned_cols=254 Identities=13% Similarity=0.171 Sum_probs=191.4
Q ss_pred EEEEEECCCeEEEEECCCCC----------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 002389 661 LLCSGFSDGSIKMWDIKKQS----------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~----------~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
.|++|++...|.-+++.-.. ..++..++.|.++|++++. ++.+++|||.|-+|+|||+.+.. .....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhcce
Confidence 36788888887777664322 1246677899999999997 68999999999999999998754 34445
Q ss_pred eccCCCeEEeccC--C--CEEEEEecCCeEEEEeCCC--ceeeeccC-CCeEEEEEe-CCE-EEEEECCCcEEEEEccCC
Q 002389 731 IATKEPIRKLDTY--G--KTIFASTQGHRMKVIDSSR--TLKDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 731 ~~h~~~V~s~s~~--g--~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg 801 (929)
..|.+.|+++... - ..+++|+.||.|.+|+... ...++..+ +.|+.++++ .|+ -++.+.|+.++.||+.+|
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 5688888875433 2 2799999999999999883 45555553 459999997 777 557899999999999998
Q ss_pred ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 802 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 802 ~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
+...+... ...-+.+.+.|.+-+.+... -..|-+|.+.+-.+....... ..+.++.|. ++.++++|++|
T Consensus 160 r~a~v~~L-------~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 160 RVAFVLNL-------KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ccceeecc-------CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC
Confidence 76554321 23334477777777444333 247899998876655444322 345565554 67789999999
Q ss_pred CcEEEEECCCCcEEEEEeCC-CCeEEEEE-c---CCEEEEEECCCcEEEeec
Q 002389 882 SSLQIWLRGTQQKVGRISAG-SKITSLLT-A---NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 882 G~I~IWdl~sg~~i~tl~~h-~~Vtsvs~-d---g~~LaSgs~DG~I~IWdi 928 (929)
+.|.+||..++.+...+.+| .+|.++.+ . +.+|+|+|+||.|+|||+
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 99999999999999999999 55888773 2 569999999999999996
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.9e-18 Score=177.22 Aligned_cols=232 Identities=13% Similarity=0.115 Sum_probs=179.9
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE-EEeccCCCeEE--e-ccCCCEEEEEecCCeEEEEe
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKEPIRK--L-DTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~-~~~~h~~~V~s--~-s~~g~~L~sgs~Dg~V~IWD 760 (929)
+.+++|.+.|.+++|+.+|..|++|+.|+++++|++...+.... ...+|.+.|.. + ..+++.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45679999999999999999999999999999999987653322 22356655543 3 46778999999999999999
Q ss_pred CCC--ceeeeccC-CCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-ceEEEEE
Q 002389 761 SSR--TLKDIYRS-KGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASS 835 (929)
Q Consensus 761 l~~--~~~~l~~~-~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-~i~~~s~ 835 (929)
.+. +...+... ..+.-.-.+ ++++++|+.|..|..+|.++.+..... .....++.+.++.+ ..+.++.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-------~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-------QFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-------cccceeeeeeecCCCCEEEEec
Confidence 984 34334333 334433334 555889999999999999875433221 12344556666644 3444443
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CC
Q 002389 836 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--ND 912 (929)
Q Consensus 836 S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~ 912 (929)
.-|+|.|.....-+.++.+..|.....+|.|+|+|+|+|+|+.|-.+.+||++..-+++.+..+. +|+.++|+ |+
T Consensus 167 --GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 --GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred --CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 24899999988888999999999999999999999999999999999999999988999998875 49988875 99
Q ss_pred EEEEEECCCcEEE
Q 002389 913 IVLCGTETGLIKG 925 (929)
Q Consensus 913 ~LaSgs~DG~I~I 925 (929)
+|++|+.|..|-|
T Consensus 245 ~lASaSEDh~IDI 257 (313)
T KOG1407|consen 245 MLASASEDHFIDI 257 (313)
T ss_pred eeeccCccceEEe
Confidence 9999999988754
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.3e-18 Score=188.35 Aligned_cols=232 Identities=16% Similarity=0.222 Sum_probs=190.1
Q ss_pred CCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCe
Q 002389 648 CSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~ 724 (929)
-.+.|.+++|- || ++++|...|.|+|+|.++. ..++.+.+|+.+|..+.|+|+++. +++|++|+.+++||+.+..
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 35789999997 55 7888899999999996653 346788999999999999997665 8899999999999999887
Q ss_pred EEEEEEeccCCCeEEec---cCCCEEEEEecCCeEEEEeCCC---ceeeeccCCCeEEEEEe-CCEEEEEECCCcEEEEE
Q 002389 725 LELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELA 797 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s---~~g~~L~sgs~Dg~V~IWDl~~---~~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwD 797 (929)
. .....+|.+.|.+.+ .++..+++|+.||+|++||.+. ....+.++.+|.++.+- .|.+++.+....+++||
T Consensus 145 v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 145 V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 4 556779999999754 3455899999999999999883 45566678889988875 77777777788999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+.+|...... ...|.+.|+++.+..++..+++.+ =|+.+++||..+.+.+..+. -.++|.+++.+||++.++.
T Consensus 224 l~~G~qll~~-----~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 224 LTTGGQLLTS-----MFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred ecCCceehhh-----hhcccceEEEEEeecCCceEeecc-cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEE
Confidence 9976654331 233889999999999888777777 57899999988877776653 4578999999999999999
Q ss_pred EeCCCcEEEEEC
Q 002389 878 NSSASSLQIWLR 889 (929)
Q Consensus 878 gS~DG~I~IWdl 889 (929)
|..||.+.+=+.
T Consensus 297 GmsnGlv~~rr~ 308 (487)
T KOG0310|consen 297 GMSNGLVSIRRR 308 (487)
T ss_pred ecccceeeeehh
Confidence 999999887743
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.4e-18 Score=176.68 Aligned_cols=242 Identities=13% Similarity=0.178 Sum_probs=188.0
Q ss_pred eecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCe-eEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Q 002389 643 EASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGV 717 (929)
Q Consensus 643 ~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~-~~i~~l~gH~~~Vtslafsp--dg~~LaSgs~DgtIrI 717 (929)
+++.+|++.|..+..+ +.+|||+++|++|+|+..+.... .++.++.||.+||+.++|.. .|..|+|++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 3456899999887776 88999999999999999987654 67889999999999999986 7899999999999999
Q ss_pred EEccCCeEEEEE-EeccCCCeEEe--ccC--CCEEEEEecCCeEEEEeCCCc----ee--eeccCCCeEEEEEe----CC
Q 002389 718 WQMVQRKLELIE-VIATKEPIRKL--DTY--GKTIFASTQGHRMKVIDSSRT----LK--DIYRSKGIKSMSVV----QG 782 (929)
Q Consensus 718 WDl~tg~~~~~~-~~~h~~~V~s~--s~~--g~~L~sgs~Dg~V~IWDl~~~----~~--~l~~~~~V~sla~s----dg 782 (929)
|.-.+|+..... ...|...|.++ .|+ |-.+++++.||.|.+.+.+.. .. ...+.-+|+++++. +|
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 999888643322 23677888865 455 447899999999999987743 11 11234568888773 22
Q ss_pred ------------EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc----eEEEEEecCCCeEEEEE
Q 002389 783 ------------KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW----LYSASSSVEGSNIKEWR 846 (929)
Q Consensus 783 ------------~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~----i~~~s~S~dDgtI~IWD 846 (929)
++++|+.|..|++|+...+.-..- +.+.+|...++.++..|.. .++++.| .||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-qDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE----RTLEGHKDWVRDVAWAPSVGLPKSTIASCS-QDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhh----hhhhhcchhhhhhhhccccCCCceeeEEec-CCCcEEEEE
Confidence 489999999999999998743332 4467889999999988863 3445555 889999998
Q ss_pred CCCC--C-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 847 RHRK--P-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 847 l~~~--~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.+.. + ..+.+......+..+.||+.|..|+.++.|+.|.+|.-
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 6522 1 12334445678999999999999999999999999973
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=8.1e-18 Score=194.45 Aligned_cols=272 Identities=20% Similarity=0.234 Sum_probs=201.6
Q ss_pred CCC-CCEEEEEEe-CC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 647 KCS-GAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~-~~Vtsl~fs-~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.|. +.|+.++|. || .+++|+..|.+-+||++..+. .......|.+.|+...|.|....++|++.|+.+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 454 999999998 55 799999999999999997653 2223347888888888888888888888888888774442
Q ss_pred CeE--E--------------------------------------------------------------------------
Q 002389 723 RKL--E-------------------------------------------------------------------------- 726 (929)
Q Consensus 723 g~~--~-------------------------------------------------------------------------- 726 (929)
+.- .
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 110 0
Q ss_pred -------------------------E----------EEEeccC------CCeE--EeccCCCEEEEEecCCeEEEEeCCC
Q 002389 727 -------------------------L----------IEVIATK------EPIR--KLDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 727 -------------------------~----------~~~~~h~------~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
. .....++ ..+. ++++.|++.+.|+..|.|-+|++..
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 0 0000011 1112 2456677888888888888888873
Q ss_pred cee--ee----ccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 764 TLK--DI----YRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 764 ~~~--~l----~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
... .+ .+...|+.++.. +..+++++.+|.+.+||..+.... ..+.. +.++..+..|......+..
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~------~~l~l-~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK------KSLRL-GSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee------eeecc-CCCcceeeeeehhhhhhhh
Confidence 322 12 235568888887 444889999999999999875421 11111 4566666666554333322
Q ss_pred ecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCE
Q 002389 836 SVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDI 913 (929)
Q Consensus 836 S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~--dg~~ 913 (929)
. +|-.|+++|..+.++++.+.||++.|++++|||||++|++++.|++|++||+.++.++-.+....+.+++++ +|++
T Consensus 553 ~-ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 553 L-DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred c-CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 2 678999999999999999999999999999999999999999999999999999999999998888777665 5889
Q ss_pred EEEEECC-CcEEEee
Q 002389 914 VLCGTET-GLIKGWI 927 (929)
Q Consensus 914 LaSgs~D-G~I~IWd 927 (929)
|+|...| .-|++|.
T Consensus 632 LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEEecCceEEEEE
Confidence 9999998 5699994
No 98
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=3.2e-19 Score=186.40 Aligned_cols=234 Identities=16% Similarity=0.209 Sum_probs=191.5
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~-gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
-|.++|.|+.|+ |. .+|+|+.||.|+||.+.++.| ++.|. +|+.+|+|+.|+.|+..+++++.|.++++--+..|
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 478999999999 44 899999999999999999976 66674 89999999999999999999999999999999999
Q ss_pred eEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCC--Cceeeecc---CCCeEEEEE-e--CCEEEEEECCCcE
Q 002389 724 KLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR---SKGIKSMSV-V--QGKIYIGCMDSSI 793 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~---~~~V~sla~-s--dg~llsgs~Dg~I 793 (929)
++. ....+|...|. .|+++|.++++++.||+|++|+.. .+..++.. .-.|.++-. + ..+++++...+++
T Consensus 339 K~L-KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCL-KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhH-HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 853 34557888777 488999999999999999999987 45555554 334666654 4 4458888899999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
++.++...-...+..+ +..++..-+...+|.+.+..+.+ +|+.++.|...+|.+.+++..|...|..++-+|..+
T Consensus 418 ~imn~qGQvVrsfsSG----kREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSG----KREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred EEEeccceEEeeeccC----CccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 9999876433333222 22244445556677766666555 789999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEE
Q 002389 874 YLNYNSSASSLQIWL 888 (929)
Q Consensus 874 ~LaSgS~DG~I~IWd 888 (929)
.+++-++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999995
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=1.9e-18 Score=189.37 Aligned_cols=272 Identities=14% Similarity=0.211 Sum_probs=212.2
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCee-EEEEec--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM-LVWDVK--EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~-~i~~l~--gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
.|..-|.+++++ +. +++||+. |-|+|||+.....+ ++..+. .-...|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 588889999998 44 6777775 77999999864322 344443 235679999999999999999999999999998
Q ss_pred CCeEEEEEEeccCCC-e--EEeccCCCEEEEEecCCeEEEEeCCCce--eeecc-CCCeEEEEEe-CCE-EEEEECCCcE
Q 002389 722 QRKLELIEVIATKEP-I--RKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYR-SKGIKSMSVV-QGK-IYIGCMDSSI 793 (929)
Q Consensus 722 tg~~~~~~~~~h~~~-V--~s~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I 793 (929)
..............+ . .+++++.+..+++..||.|.|||+.+.. +.+.+ ..++.|+.++ +|. +++|+-|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 765432222211111 1 2478999999999999999999998543 44444 4679999998 665 9999999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
+.||++++..... ......|.++-..|.+-+++.+. +.+.+.+....... ...+.-|...|.++.|.+-|+
T Consensus 576 RcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~-kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 576 RCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred eehhhhhhhhhhh-------hhhhhhheecccCCCccceeeec-ccCcEEEEecCCcc-ceeecccccEEEEEEecccCc
Confidence 9999998764322 11256788888888888877554 56667776655443 445667899999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
++++.+.|+-+..|...-|..++..+..+.|.+ |++|.++|+||+.|....||.+
T Consensus 647 wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999999988888887 6688999999999999998875
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=160.02 Aligned_cols=277 Identities=15% Similarity=0.128 Sum_probs=198.6
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEEECCC------C----Ce---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK------Q----SA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~------~----~~---~~i~~l~gH~~~Vtslafspdg~~LaSgs~D 712 (929)
.+..|.+++|+ +++.+.|+..++.+|-.... + +. .....-+.|.+.|+|.+|+|+|+.+++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 36789999999 56899999999999875421 1 11 1223336799999999999999999999999
Q ss_pred CeEEEEEccCCeEE----EEEEeccCCCeEEec------cCCCEEEEEe-cCCeEEEEeCC--CceeeeccCC-CeEEE-
Q 002389 713 KTIGVWQMVQRKLE----LIEVIATKEPIRKLD------TYGKTIFAST-QGHRMKVIDSS--RTLKDIYRSK-GIKSM- 777 (929)
Q Consensus 713 gtIrIWDl~tg~~~----~~~~~~h~~~V~s~s------~~g~~L~sgs-~Dg~V~IWDl~--~~~~~l~~~~-~V~sl- 777 (929)
++|++.-+....+. .....-|...|..+. ..+..+++++ .|..|++-|-. .....+.++. .|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 99999876543321 123345677777532 1233444443 34456665654 3344444433 35444
Q ss_pred EEeCCEEEEEECCCcEEEEEccCCccceeccccccccc---CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 002389 778 SVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL---QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 854 (929)
Q Consensus 778 a~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~---~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~ 854 (929)
.|++-.+++|+.|.+|++||++-........ ..+.. ....+.+++..|.+..++++. .|....+||++.+..++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~--~~~~~~glessavaav~vdpsgrll~sg~-~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD--NDFHDGGLESSAVAAVAVDPSGRLLASGH-ADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeecc--CcccCCCcccceeEEEEECCCcceeeecc-CCCceEEEEeeCCceee
Confidence 3344558889999999999998654432211 11111 246788999999999988876 77899999999999999
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCC-CCeEEEEEcCC--EEEEEECCCcEEEee
Q 002389 855 IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----QKVGRISAG-SKITSLLTAND--IVLCGTETGLIKGWI 927 (929)
Q Consensus 855 ~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg----~~i~tl~~h-~~Vtsvs~dg~--~LaSgs~DG~I~IWd 927 (929)
.+..|+..|+++.|+|...|+.+|+.|..|++-|++.. -++.....| .++..+.|.++ .+++.+.|.++.+|-
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 99999999999999999999999999999999997542 123344445 44666777754 788999999999995
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.4e-18 Score=183.36 Aligned_cols=276 Identities=11% Similarity=0.161 Sum_probs=215.7
Q ss_pred CCCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrIWDl~t 722 (929)
+.-.+.|++|.|+++ .+++|+.||+++||.++......++.+.--..||.+.+|.|+|. .++++|.....+.||+.+
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 344688999999965 89999999999999998776566777766678999999999999 799999999999999998
Q ss_pred CeEEEEEEe-ccCC-CeE--EeccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-EEEEECCCcEE
Q 002389 723 RKLELIEVI-ATKE-PIR--KLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQ 794 (929)
Q Consensus 723 g~~~~~~~~-~h~~-~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~ 794 (929)
.+....... ++.. .+. .+++++++|+..+..|.|.+..... -+..+.-.+.|..+.|+ +++ +++.+.+|.|+
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 876544333 3332 233 4579999999999999999987652 23344446778999997 777 88888999999
Q ss_pred EEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCeEEEecCCCCCeEEEE
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~------~~~i~~l~~h~~~V~sla 867 (929)
+||+...... +.|..+ .-.-++++.+.++.|.+++| +.|.|.|||.++ .+++..+..-...|+++.
T Consensus 370 v~nl~~~~~~------~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 370 VWNLRQNSCL------HRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEecCCcceE------EEEeecCccceeeeeecCCCceEEecc-CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999885332 233332 22345677778888888877 778999999643 334555555667899999
Q ss_pred EecCCCEEEEEe--CCCcEEEEECCCCcEEEEEeCC----CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 868 VVEDFIYLNYNS--SASSLQIWLRGTQQKVGRISAG----SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 868 fSpdg~~LaSgS--~DG~I~IWdl~sg~~i~tl~~h----~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+||++.||.+| .+..+++-.+.+......+... +.|+|++|+ |.+++.|..+|+|.+|.+
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 999999997776 5688999999887777777654 349999887 569999999999999975
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-17 Score=170.31 Aligned_cols=231 Identities=13% Similarity=0.167 Sum_probs=188.6
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCC-
Q 002389 686 DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSS- 762 (929)
Q Consensus 686 ~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~- 762 (929)
.++||..+++.+.++.+|..|.||+.|.+..||-..+|+ ..-...+|...|.++ +.+.+.+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 468999999999999999999999999999999988886 344556899999975 5778899999999999999998
Q ss_pred -CceeeeccCCCeEEEEEe-CCEEEEEE------CCCcEEEEEccCCc-cceecccccccccCCCCeEEEEEcCCceEEE
Q 002389 763 -RTLKDIYRSKGIKSMSVV-QGKIYIGC------MDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSA 833 (929)
Q Consensus 763 -~~~~~l~~~~~V~sla~s-dg~llsgs------~Dg~I~iwDl~tg~-~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~ 833 (929)
+++..+..+..|+.+.|+ +|.++..+ ..+.|.++|++... ...-..|......+...++..-+.|-+.+++
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 456666778889999998 77655444 35679999998543 2222223334445567788888888888888
Q ss_pred EEecCCCeEEEEECCCC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--
Q 002389 834 SSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA-- 910 (929)
Q Consensus 834 s~S~dDgtI~IWDl~~~-~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d-- 910 (929)
++. ++|.|.+||.+++ +.+..-..|...|+.+.++||..++++||.|.+-++||..+.+.++++....+|++.+..
T Consensus 164 ~Gh-e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGH-EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred Eec-CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 877 8899999999887 455666789999999999999999999999999999999999999999999999997755
Q ss_pred CCEEEEEE
Q 002389 911 NDIVLCGT 918 (929)
Q Consensus 911 g~~LaSgs 918 (929)
.++++.||
T Consensus 243 ~d~VilgG 250 (327)
T KOG0643|consen 243 LDHVILGG 250 (327)
T ss_pred cceEEecC
Confidence 34555444
No 103
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.4e-17 Score=184.44 Aligned_cols=271 Identities=13% Similarity=0.138 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~t 722 (929)
.||++.|.||... +.+|++|+.||+|+||.+.++.| +++++ -.+.|.|++|+|.+.. ++.++.++.+.|-+..-
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc--vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC--VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE--EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 3999999999998 55999999999999999999976 45442 3558999999998875 33333333344444322
Q ss_pred Ce------------------------------------EEEEEEeccCCCeEEec--cCCCEEEEEecC---CeEEEEeC
Q 002389 723 RK------------------------------------LELIEVIATKEPIRKLD--TYGKTIFASTQG---HRMKVIDS 761 (929)
Q Consensus 723 g~------------------------------------~~~~~~~~h~~~V~s~s--~~g~~L~sgs~D---g~V~IWDl 761 (929)
|. .-....+.|..+|..++ ..|++++++..+ ..|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 20 00113344566666554 457799988654 48899998
Q ss_pred CCce--eeecc-CCCeEEEEEeCCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 762 SRTL--KDIYR-SKGIKSMSVVQGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 762 ~~~~--~~l~~-~~~V~sla~sdg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
.+.. ..+.. .+.|.++.|+..+ .+..++...|++||+...... +........|.++++|+.+-.++.++
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelv------KkL~tg~kwiS~msihp~GDnli~gs- 626 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELV------KKLLTGSKWISSMSIHPNGDNLILGS- 626 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHH------HHHhcCCeeeeeeeecCCCCeEEEec-
Confidence 8432 23322 5568999998444 555667789999999874332 22233467889999999877777666
Q ss_pred CCCeEEEEECCCC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE------C-CCC--cEEEEEeCCCC----
Q 002389 838 EGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL------R-GTQ--QKVGRISAGSK---- 903 (929)
Q Consensus 838 dDgtI~IWDl~~~-~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd------l-~sg--~~i~tl~~h~~---- 903 (929)
.|+.+..||++-+ +..+++..|...+++++|++.-.++++|+.||++.||. + ++. -++..+.+|..
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence 6789999998654 56778889999999999999999999999999999985 1 111 23678888843
Q ss_pred -eEEEEEcCC--EEEEEECCCcEEEe
Q 002389 904 -ITSLLTAND--IVLCGTETGLIKGW 926 (929)
Q Consensus 904 -Vtsvs~dg~--~LaSgs~DG~I~IW 926 (929)
|....|+++ +|+++|.||+|++|
T Consensus 707 gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 707 GVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeecccCCCceEEecCCCceEEee
Confidence 666678865 99999999999999
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.5e-16 Score=167.84 Aligned_cols=236 Identities=13% Similarity=0.146 Sum_probs=180.9
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe-ccCCCeEEeccCCCEEEEEec--CCeEEEEe
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI-ATKEPIRKLDTYGKTIFASTQ--GHRMKVID 760 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~-~h~~~V~s~s~~g~~L~sgs~--Dg~V~IWD 760 (929)
.+.++.-.+.|+++.|+++|.++++++.|.++++||..+|+....... .....+.+|..+...++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 445666678999999999999999999999999999999876543332 223345578888888887776 88999998
Q ss_pred CC--CceeeeccC-CCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 761 SS--RTLKDIYRS-KGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 761 l~--~~~~~l~~~-~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
+. +.++.+.++ +.|.+++.+ ++.+++++.|++|++||++........ .....+ ..++.|.+.+.+..
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~p--i~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRP--IAAFDPEGLIFALA 158 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCc--ceeECCCCcEEEEe
Confidence 87 455666664 459999986 777999999999999999965443321 112233 45678888887776
Q ss_pred ecCCCeEEEEECCCC--CeEEEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-----eE
Q 002389 836 SVEGSNIKEWRRHRK--PQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-----IT 905 (929)
Q Consensus 836 S~dDgtI~IWDl~~~--~~i~~l~---~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-----Vt 905 (929)
. ..+.|++||++.- .+..++. +.....+.+.|||||++|+.+...+.+++.|.-+|....++..+.. +.
T Consensus 159 ~-~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 N-GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred c-CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 6 3349999997642 2233332 3356789999999999999999999999999999999999987721 22
Q ss_pred -EEEEcCCEEEEEECCCcEEEeec
Q 002389 906 -SLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 906 -svs~dg~~LaSgs~DG~I~IWdi 928 (929)
++.|+++++++|++||+|.+|+.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEc
Confidence 35588999999999999999984
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.78 E-value=4.2e-18 Score=177.69 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=183.2
Q ss_pred eecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 643 EASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 643 ~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
.....|.++|+++.|+ +..|++|+.|++|+++|+.....+.....-....+|.++.|+|.|.+|+.|....++++||+
T Consensus 166 RTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred eehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEec
Confidence 3344899999999999 44899999999999999986543322222234578999999999999999999999999999
Q ss_pred cCCeEEEEEE--eccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--Cceeeecc---CCCeEEEEEe-CCE-EEEEEC
Q 002389 721 VQRKLELIEV--IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR---SKGIKSMSVV-QGK-IYIGCM 789 (929)
Q Consensus 721 ~tg~~~~~~~--~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~---~~~V~sla~s-dg~-llsgs~ 789 (929)
.+-++..... .+|.+.|++ .++.++.-++++.||.|++||-- ++..++.. +..|.+..|. +|+ +++.+.
T Consensus 246 ~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 246 NTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred cceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 9987643332 367788886 46889999999999999999954 56666654 4458888898 777 888999
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEE
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAV 868 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~-~l~~h~~~V~slaf 868 (929)
|..+++|.+.+|+......+...- +....-+.-.|+...-|.+.-.-..+.+.-||.++..... ..-+|.+.++.+.-
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~t-grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTT-GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcc-cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 999999999998765443221110 0011111222333333433322223678889988765443 34589999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECC
Q 002389 869 VEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~ 890 (929)
||.+.-+.+||.|-.+++|-..
T Consensus 405 SP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 405 SPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCCceeeecccceeeeeeec
Confidence 9999999999999999999754
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=2.8e-17 Score=187.04 Aligned_cols=227 Identities=18% Similarity=0.250 Sum_probs=185.1
Q ss_pred CCCCCEEE-EEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 647 KCSGAVTA-LIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~~~Vts-l~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
+|.+-|.+ ++|. ++.+++|+.|++|.+|...+.. +..++++|+..|.|++...++. ++|||.|.++++|....
T Consensus 55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~ 131 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE 131 (745)
T ss_pred cCcceeeccceeccccCcceEeecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccceEEecchh
Confidence 77888887 8886 3579999999999999999875 5899999999999999877777 99999999999998653
Q ss_pred CeEEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCCCceeeeccC-CCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 002389 723 RKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDIYRS-KGIKSMSVV-QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~-~~V~sla~s-dg~llsgs~Dg~I~iwDl~ 799 (929)
-. ....+|..+|.++. ...+.+++|+.|.+|++|.-....+++.+| ..|+.+++- ++.+++++.||.|+.|++.
T Consensus 132 l~---~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 132 LV---YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred hh---cccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc
Confidence 22 23668999998753 344489999999999999999888888875 459999987 5589999999999999995
Q ss_pred CCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
.... ....+|...++++....+....++.+ +|++++||+.. .+.+.+...+..|+++.+-++|. |++|+
T Consensus 209 ge~l-------~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 209 GEVL-------LEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGG 277 (745)
T ss_pred Ccee-------eeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEec
Confidence 5332 23467889999999544444455555 89999999987 66777776777899999999988 56677
Q ss_pred CCCcEEEEECC
Q 002389 880 SASSLQIWLRG 890 (929)
Q Consensus 880 ~DG~I~IWdl~ 890 (929)
+||.||||...
T Consensus 278 SDG~VrVfT~~ 288 (745)
T KOG0301|consen 278 SDGRVRVFTVD 288 (745)
T ss_pred cCceEEEEEec
Confidence 79999999755
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=178.03 Aligned_cols=230 Identities=12% Similarity=0.146 Sum_probs=189.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc---ee
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT---LK 766 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~---~~ 766 (929)
..++++...|....++||+.|+++.++|...++ ......+|...|.. +.++...+++++.|..|++|..... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh-hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 457788888877789999999999999998876 34456678888876 4577778999999999999997732 22
Q ss_pred eeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEE
Q 002389 767 DIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKE 844 (929)
Q Consensus 767 ~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~I 844 (929)
...+...|+.+..+ ...+++++.|+...+.|+++|.....-. -....-.+++.++|||+...+++. .|+.+++
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs----~~~s~v~~ts~~fHpDgLifgtgt-~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS----DETSDVEYTSAAFHPDGLIFGTGT-PDGVVKI 373 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe----eccccceeEEeeEcCCceEEeccC-CCceEEE
Confidence 22345678888886 4459999999999999999987655421 112345689999999999988877 6689999
Q ss_pred EECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEEEEEc--CCEEEEEECC
Q 002389 845 WRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITSLLTA--NDIVLCGTET 920 (929)
Q Consensus 845 WDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~--~Vtsvs~d--g~~LaSgs~D 920 (929)
||+..+..+..+.+|+++|..++|+.+|.||++++.|+.|++||++..+.+.++.... .|.++.|| |.+|+.+|.|
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999998899999999999999999999999999999999999999999888888664 49999988 8899999888
Q ss_pred CcEEEee
Q 002389 921 GLIKGWI 927 (929)
Q Consensus 921 G~I~IWd 927 (929)
=+|++++
T Consensus 454 l~Vy~~~ 460 (506)
T KOG0289|consen 454 LQVYICK 460 (506)
T ss_pred eEEEEEe
Confidence 7777754
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=183.21 Aligned_cols=226 Identities=20% Similarity=0.308 Sum_probs=174.8
Q ss_pred CCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC----
Q 002389 649 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ---- 722 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t---- 722 (929)
.++|.|++-+ .| +++.|+..|.|++|.+.++.. +..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|++.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 5789999998 44 666777999999999999964 777899999999999999999999999999999998742
Q ss_pred ---CeE-EEEEEeccCCCeEEec----cCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe--CCEEEEEECC
Q 002389 723 ---RKL-ELIEVIATKEPIRKLD----TYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV--QGKIYIGCMD 790 (929)
Q Consensus 723 ---g~~-~~~~~~~h~~~V~s~s----~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s--dg~llsgs~D 790 (929)
+.. ......+|.-+|+.+. +...++++++.|.++++||+.. .+.++.....+.+++.+ +..+++|+.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCc
Confidence 111 1223446777888753 3446999999999999999983 44555667889999997 5559999999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC--CeEEEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT--TIQAMAV 868 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~--~V~slaf 868 (929)
|.|.+.++.+-. ++...+. .+.++.. +..+..+.||.+ .|+++++
T Consensus 239 G~I~~~~~~~~~------------~~~~~v~--------------------~k~~~~~-~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 239 GKIFQNLLFKLS------------GQSAGVN--------------------QKGRHEE-NTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceEEeeehhcCC------------ccccccc--------------------ccccccc-cceeeeeccccCCcceeEEEE
Confidence 999999886511 1111111 1111111 233556777877 9999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEE
Q 002389 869 VEDFIYLNYNSSASSLQIWLRGTQQKVGRIS-AGSKITSLLT 909 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~-~h~~Vtsvs~ 909 (929)
+-||..|++|+.||.|.|||+.+.++++++. ..++|+.+.+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 9999999999999999999999999999888 5577887766
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.9e-16 Score=178.66 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=207.9
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
..+|++++|+ .+.||.+-.||.|.||++...= -....+.++. ..|.+++|+ +|..|+|.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 5689999998 6689999999999999999753 2344555554 579999999 556789999999999999999874
Q ss_pred EEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeecc-----CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 726 ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 726 ~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~-----~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
.. .......+|.+ +.+.+..++.|+.||.+..++......++.. ..++.+++|. ++. +++|+.||.|++|
T Consensus 103 ~~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KY-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eE-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 33 33345667775 4577889999999997777777644333322 4679999998 666 9999999999999
Q ss_pred EccCCccceecc--cccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCE
Q 002389 797 AVSNNVEREIKA--PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIY 874 (929)
Q Consensus 797 Dl~tg~~~~i~~--~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~ 874 (929)
|...+....+.. ..+.-+.....+.++.+-.++....+ . .-|+|++||...+.+++....|...|.+++..+++.+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg-D-S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG-D-SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe-c-CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 999876544110 00111223456677777766654333 2 3589999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcE----EEEEeCC-CCeEEEEEcCCEEEEEECCCcEEE
Q 002389 875 LNYNSSASSLQIWLRGTQQK----VGRISAG-SKITSLLTANDIVLCGTETGLIKG 925 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~----i~tl~~h-~~Vtsvs~dg~~LaSgs~DG~I~I 925 (929)
++++|.|+.|.-|...++.. ......| +.|++++.-+..+++||.|+++.+
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAI 315 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEE
Confidence 99999999999998666533 2223344 349999988889999999998876
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.5e-17 Score=172.08 Aligned_cols=238 Identities=13% Similarity=0.224 Sum_probs=185.7
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEEC------CCC-------------------------------C-eeEEEE
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDI------KKQ-------------------------------S-AMLVWD 686 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~------~~~-------------------------------~-~~~i~~ 686 (929)
||.|.|++|.|+ +.++++++.|++..||.. ... . ..++..
T Consensus 188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence 999999999999 448999999999999982 100 0 025667
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCCc
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
+.+|.+.|.+..|-..|+.+++++.|++..+||+++|.+ .....+|....+.. .|..+.+++.+.|.+.++||.+..
T Consensus 268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~-v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV-VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred eeccccceEehhhhcCcceeeeeeccccceeeeeccCce-eccccCcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence 889999999999999999999999999999999999974 34455787777644 466678899999999999999843
Q ss_pred ---eeeecc-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 765 ---LKDIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 765 ---~~~l~~-~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
...+.+ ...|++..|. +.++++|+.|.+|++||+++... |.... ....+++.++.+.+...++-- .++
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs-----plATI-RtdS~~NRvavs~g~~iIAiP-hDN 419 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS-----PLATI-RTDSPANRVAVSKGHPIIAIP-HDN 419 (481)
T ss_pred cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC-----cceee-ecCCccceeEeecCCceEEec-cCC
Confidence 334444 4569999998 88899999999999999987432 11111 125678888888777554433 367
Q ss_pred CeEEEEECCCCCeEE----EecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCC
Q 002389 840 SNIKEWRRHRKPQIS----IAPEKGTTIQAMAVVEDF--IYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 840 gtI~IWDl~~~~~i~----~l~~h~~~V~slafSpdg--~~LaSgS~DG~I~IWdl~sg 892 (929)
..|++||+++..+.. ...+|...|.+++|..+. .-|++++.|..+.-|++...
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 899999999876543 446899999999998543 35788899999999987653
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=8.4e-17 Score=168.19 Aligned_cols=225 Identities=14% Similarity=0.234 Sum_probs=178.1
Q ss_pred ecCCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEE
Q 002389 644 ASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQ 719 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~--~LaSgs~DgtIrIWD 719 (929)
..+.|.++|.+++|+ ++ .+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... .|+|||.|++++.||
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 345899999999999 33 89999999999999999985 577789999999999988776 599999999999999
Q ss_pred ccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeecc-----CCCeEEEEEe-CCE-EEEEECCCc
Q 002389 720 MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSVV-QGK-IYIGCMDSS 792 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~-----~~~V~sla~s-dg~-llsgs~Dg~ 792 (929)
++..... ......+.+++.+.-...++++..++.|.+|++.+....+.. .-.++|++.. +.. .+.|+-.|.
T Consensus 144 ~R~~~pv--~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 144 TRSSNPV--ATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred cCCCCee--eeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence 9976543 333455667787777888999999999999999754443332 3458899886 333 678999999
Q ss_pred EEEEEccCCccceecccccccccC---------CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQ---------SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 863 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~---------~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V 863 (929)
+.+..+..+....- ..++.| -..|+++++||..-.+++.+ .||+..+||.+....+.....|..+|
T Consensus 222 v~iq~id~~~~~~n----FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-sDGtf~FWDkdar~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDN----FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-SDGTFSFWDKDARTKLKTSETHPQPI 296 (347)
T ss_pred EEEEecCCCCccCc----eeEEEeccCCCCCCceEEecceEeecccceEEEec-CCceEEEecchhhhhhhccCcCCCcc
Confidence 99998877522111 112222 23578899999866666665 57899999999888888888999999
Q ss_pred EEEEEecCCCEEEEE
Q 002389 864 QAMAVVEDFIYLNYN 878 (929)
Q Consensus 864 ~slafSpdg~~LaSg 878 (929)
++..|+.+|.+++-+
T Consensus 297 tcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYA 311 (347)
T ss_pred ceeEecCCCCEEEEE
Confidence 999999999988654
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.76 E-value=4.5e-17 Score=194.00 Aligned_cols=238 Identities=17% Similarity=0.182 Sum_probs=182.2
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCC----C------------CeeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK----Q------------SAMLVWDVKEHRKAVTSFSLFEPGESLLS 708 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~----~------------~~~~i~~l~gH~~~Vtslafspdg~~LaS 708 (929)
.|.+.|+|+.|+ |+ +||+||.|+.|.||+... . +.+.+..+.+|+..|..++|+|++.+|+|
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 799999999999 44 999999999999999872 0 11356788999999999999999999999
Q ss_pred EeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-------CCCeEEE
Q 002389 709 GSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-------SKGIKSM 777 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-------~~~V~sl 777 (929)
+|.|++|.|||..+.+ ......+|...|. +|+|-|+++++-+.|++|++|++.. ..+.+.. ...+..+
T Consensus 147 ~s~DnsViiwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred ecccceEEEEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 9999999999999984 4556668888886 5789999999999999999999763 3333332 2347788
Q ss_pred EEe-CCEEEEEE-----CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC------c---------eE-EEEE
Q 002389 778 SVV-QGKIYIGC-----MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD------W---------LY-SASS 835 (929)
Q Consensus 778 a~s-dg~llsgs-----~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d------~---------i~-~~s~ 835 (929)
.|+ ||++++.. .-..+.+.+-.+- ..- ..+-+|..++..+.|+|. . .| +++.
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tW--k~~----~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTW--KVD----KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCc--eee----eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 887 88855422 2334556555331 111 234578899999999852 1 12 4555
Q ss_pred ecCCCeEEEEECCCCCeEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 836 SVEGSNIKEWRRHRKPQISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 836 S~dDgtI~IWDl~~~~~i~~-l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
+..|++|.+|.....+++.. ..-....|..++|+|||..|..+|.||+|.+..++.
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 56899999999865554332 222456899999999999999999999999998765
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-15 Score=176.99 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=198.5
Q ss_pred CCCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~t 722 (929)
+++...|+++.-++- .++.|..+|+|.|++++.++. +.+++...+.|++++|..||.. +++|+..|.+-+||++.
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki--l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI--LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcE--EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 488899999999854 799999999999999999864 7777554699999999999987 77888889999999998
Q ss_pred CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC---C---ceeeecc-CCCeEEEEEe--CCE-EEEEECC
Q 002389 723 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS---R---TLKDIYR-SKGIKSMSVV--QGK-IYIGCMD 790 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~---~---~~~~l~~-~~~V~sla~s--dg~-llsgs~D 790 (929)
.+........|.+.+.. +-+....+++++.|+.+++|=.+ + .++.-.+ ..+..|+.|. +|+ +++.+.|
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 87766666567565553 45666678888888877777433 1 1111111 1223444443 333 3344444
Q ss_pred C-----------------------------------------------------------------cEEEEEccCCccce
Q 002389 791 S-----------------------------------------------------------------SIQELAVSNNVERE 805 (929)
Q Consensus 791 g-----------------------------------------------------------------~I~iwDl~tg~~~~ 805 (929)
+ ..+.|+..+.....
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 4 44455544433311
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe---cCCCCCeEEEEEecCCCEEEEEeCCC
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA---PEKGTTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l---~~h~~~V~slafSpdg~~LaSgS~DG 882 (929)
.......++.....+++++.++-+.+.+.+. ..|+|.+|+++.|.....+ ..|..+|++++...-++.+++++.+|
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGY-SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEec-cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 1111112222345566777777777666544 5689999999999887777 48999999999999999999999999
Q ss_pred cEEEEECCCCcEE-----------------------------------------EEEeCC-CCeEEEEEc--CCEEEEEE
Q 002389 883 SLQIWLRGTQQKV-----------------------------------------GRISAG-SKITSLLTA--NDIVLCGT 918 (929)
Q Consensus 883 ~I~IWdl~sg~~i-----------------------------------------~tl~~h-~~Vtsvs~d--g~~LaSgs 918 (929)
.+++||.++..++ +.+.+| ++|++++|+ |++|++++
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 9999998764422 223356 348887765 88999999
Q ss_pred CCCcEEEeec
Q 002389 919 ETGLIKGWIP 928 (929)
Q Consensus 919 ~DG~I~IWdi 928 (929)
-|++|++||+
T Consensus 596 mD~tIr~wDl 605 (910)
T KOG1539|consen 596 MDSTIRTWDL 605 (910)
T ss_pred cCCcEEEEec
Confidence 9999999996
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=1.7e-15 Score=165.09 Aligned_cols=256 Identities=11% Similarity=0.114 Sum_probs=175.5
Q ss_pred CEEEEEEe-CC-EE-EEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEE
Q 002389 651 AVTALIYY-KG-LL-CSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 651 ~Vtsl~fs-~~-~L-aSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~ 726 (929)
.+.+++|+ ++ .+ ++++.|+.|++||..+++. ...+..+.. +..++|+|+++.++ +++.|+.+++||+.+++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 36778998 33 44 6778899999999998754 455555544 56789999999865 4566899999999887654
Q ss_pred EEEEeccCCCeEEeccCCCEEEEEecCC-eEEEEeCCCce--eeeccCCCeEEEEEe-CCE-EEEE-ECCCcEEEEEccC
Q 002389 727 LIEVIATKEPIRKLDTYGKTIFASTQGH-RMKVIDSSRTL--KDIYRSKGIKSMSVV-QGK-IYIG-CMDSSIQELAVSN 800 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g~~L~sgs~Dg-~V~IWDl~~~~--~~l~~~~~V~sla~s-dg~-llsg-s~Dg~I~iwDl~t 800 (929)
.....+....-..+++++..+++++.++ .+.+||..... ..........+++|+ +|+ ++++ ..++.+++||+.+
T Consensus 109 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 109 AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 3332222222235789999999888765 56778876322 222234456678886 666 5444 4689999999998
Q ss_pred Cccceecccc-cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE-
Q 002389 801 NVEREIKAPF-KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN- 878 (929)
Q Consensus 801 g~~~~i~~~~-~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg- 878 (929)
++........ ............+.+++++.+.......++.+.+||..+++...... +...+.+++|+|+|++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEc
Confidence 6542211000 00000111234577888877643332245689999999888765543 44578999999999999886
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 002389 879 SSASSLQIWLRGTQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 879 S~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d 910 (929)
+.+|.|.+||..+++.+.+++.+...+++++.
T Consensus 268 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 299 (300)
T TIGR03866 268 GVSNDVSVIDVAALKVIKSIKVGRLPWGVVVR 299 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEcccccceeEeC
Confidence 46899999999999999999877667777654
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-16 Score=167.01 Aligned_cols=228 Identities=14% Similarity=0.236 Sum_probs=180.0
Q ss_pred cCCCCCCEEEEEEeC-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 645 SHKCSGAVTALIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.-.|..++.+.+|.| ..+++|+.||.|+.+|+.++.. ..+..|..+|.|+.+++....+++||.|++|++||.++.
T Consensus 50 ~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred heecCCceeeeeccCCceEEEeccCceEEEEEecCCcc---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence 336899999999994 5899999999999999999863 556789999999999998888999999999999999863
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeecc-----CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~-----~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
. ..........|.+++..++.+++|+.|..+.+||++.....+.. .-.++|++.- ++. +++++-||.|.+=
T Consensus 127 ~--~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 127 V--VVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred c--cccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 2 22333445589999999999999999999999999865444422 3347888875 444 8889999998877
Q ss_pred EccCCccceecccccccccC---------CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 797 AVSNNVEREIKAPFKSWRLQ---------SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~---------~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
.+.......-+ .-.++.| ..||+++++||-..+.++++ .||.|.+||..+.+.+..+..-...|.+++
T Consensus 205 ~~d~s~~~~sk--kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V~~Wd~~~rKrl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSK--KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIVNIWDLFNRKRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhh--ceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceEEEccCcchhhhhhccCCCCceEEEE
Confidence 66654211100 0112222 34899999999977777766 678999999999888888877777899999
Q ss_pred EecCCCEEEEEeC
Q 002389 868 VVEDFIYLNYNSS 880 (929)
Q Consensus 868 fSpdg~~LaSgS~ 880 (929)
|+.||..||.++.
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999873
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=7.3e-17 Score=176.65 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=176.7
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|...|.+++.+ |+ ||++|+.|..|.||+..+.+ .++.+++|.++|.+++|-.....+++++.|++|++|+++.-.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 899999999999 44 99999999999999999885 478899999999999998877789999999999999997644
Q ss_pred EEEEEEeccCCCeEEecc--CCCEEEEEecCCeEEEEeCCCceeeec-c-CCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 002389 725 LELIEVIATKEPIRKLDT--YGKTIFASTQGHRMKVIDSSRTLKDIY-R-SKGIKSMSVV-QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s~--~g~~L~sgs~Dg~V~IWDl~~~~~~l~-~-~~~V~sla~s-dg~llsgs~Dg~I~iwDl~ 799 (929)
......+|.+.|..++. -++.+.+|+.|+++++|++....+.+. + ...+.|++|- +..+++|+.+|.|.+|++.
T Consensus 278 -~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 278 -YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred -HHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 33445689999998864 344555666999999999985544443 3 4469999997 6679999999999999998
Q ss_pred CCccceeccc-ccccc-----cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC----CeEEEecCCCCCeEEEEEe
Q 002389 800 NNVEREIKAP-FKSWR-----LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK----PQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 800 tg~~~~i~~~-~~~~~-----~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~----~~i~~l~~h~~~V~slafS 869 (929)
..+....... ..+.. .+...|++++..+...+.+++| .+|.|++|-+..+ .++..+. -.+.|++++|+
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 7554322211 11111 1123688888888888777766 6789999998776 2333333 55789999999
Q ss_pred cCCCEEEEEe
Q 002389 870 EDFIYLNYNS 879 (929)
Q Consensus 870 pdg~~LaSgS 879 (929)
++|+++++|-
T Consensus 435 ~sgk~ivagi 444 (479)
T KOG0299|consen 435 NSGKRIVAGI 444 (479)
T ss_pred cCCCEEEEec
Confidence 9999776653
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=166.94 Aligned_cols=249 Identities=16% Similarity=0.181 Sum_probs=174.2
Q ss_pred eeEEEEEeecCCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCee-------------------------------
Q 002389 636 CVHTQILEASHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM------------------------------- 682 (929)
Q Consensus 636 ~~~t~~l~~~~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~------------------------------- 682 (929)
..|.+.+....||.+.|++++|+ +| +|+|++.|++|+||+++.-..+
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 45555556667999999999998 55 8999999999999998632110
Q ss_pred -----EEEEe---------------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-EEEEeccCC
Q 002389 683 -----LVWDV---------------------KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-LIEVIATKE 735 (929)
Q Consensus 683 -----~i~~l---------------------~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~-~~~~~~h~~ 735 (929)
.++.+ +.|.-.|..+-...++.+|+|++.|.+|.+|++. |+.. .........
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 00000 1233445555555677789999999999999998 5533 222233344
Q ss_pred CeEEeccCCCEEEEEecCCeEEEEeCC----Ccee------eecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEccC--
Q 002389 736 PIRKLDTYGKTIFASTQGHRMKVIDSS----RTLK------DIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSN-- 800 (929)
Q Consensus 736 ~V~s~s~~g~~L~sgs~Dg~V~IWDl~----~~~~------~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl~t-- 800 (929)
.-.+++|+|+++++++.-..|++|.+- +..+ .+.+ ...|...+|+ ..++++.+.||++++||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 455789999999999999999999864 2111 2222 3459999998 33499999999999999853
Q ss_pred --Ccc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-cCCCCCeEEEEEecCCCEEE
Q 002389 801 --NVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 801 --g~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l-~~h~~~V~slafSpdg~~La 876 (929)
++. +..+.+.......+.....+..+|++..++..+ +..+++|..+.++....+ ..|...|.+++|+++|++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEe
Confidence 111 111111111122233444788899887665543 678999998887765544 36899999999999999999
Q ss_pred EEeCCCcEEEEE
Q 002389 877 YNSSASSLQIWL 888 (929)
Q Consensus 877 SgS~DG~I~IWd 888 (929)
|++ |..++++.
T Consensus 390 tcG-dr~vrv~~ 400 (420)
T KOG2096|consen 390 TCG-DRYVRVIR 400 (420)
T ss_pred eec-ceeeeeec
Confidence 997 88888875
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=7.1e-18 Score=179.51 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=185.0
Q ss_pred EEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeC
Q 002389 683 LVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
.+..+.||.++|.|++=+|.. ..++||+.||.|++||+.+..+ ......|.+.|..+..+...++++++|.+|+.|.+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-IRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-hheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 356678999999999999987 5599999999999999987553 34455788999988888899999999999999998
Q ss_pred CC-ceeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC
Q 002389 762 SR-TLKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 838 (929)
Q Consensus 762 ~~-~~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d 838 (929)
.. ...++.....+..+..+ +..+++++ ..|.+||..... |.+.+......|.++.++|....+++.+..
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~------Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDN------PVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred cCCcceeeeccccccccccccccccccccC--ceeeecccccCC------ccceeecCCCceeEEecCCCcchheeeecc
Confidence 85 34444455556666665 22344433 468999987532 334445557788999999887766666667
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCC-CCeEEEEEc--CCEE
Q 002389 839 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ-QKVGRISAG-SKITSLLTA--NDIV 914 (929)
Q Consensus 839 DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg-~~i~tl~~h-~~Vtsvs~d--g~~L 914 (929)
|+.|.+||.+.+.+++... -+..-+.|+|+|.+-.+++|++|..++.||+... .++..+.+| +.|.++.|+ |+-+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 8999999999887765443 2345678999998888999999999999997765 458888888 459998877 8899
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
++||.|.+|+||..
T Consensus 288 vsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPV 301 (433)
T ss_pred ccccccceEEEeec
Confidence 99999999999963
No 119
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=2.5e-16 Score=179.18 Aligned_cols=284 Identities=12% Similarity=0.125 Sum_probs=213.6
Q ss_pred cCCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCee-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 002389 645 SHKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAM-----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 717 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~-----~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrI 717 (929)
..||++.|.++.|+ ++ .|+++|.|.++.||...+.... .+..+.|..++..+..|+|+++.+++-+..|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 45999999999999 44 7999999999999988765322 22333455667899999999999999999999999
Q ss_pred EEccCC-eEE-EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceee-------eccCCCeEEEEEeC--CEE
Q 002389 718 WQMVQR-KLE-LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD-------IYRSKGIKSMSVVQ--GKI 784 (929)
Q Consensus 718 WDl~tg-~~~-~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~-------l~~~~~V~sla~sd--g~l 784 (929)
|...+. .+. .....+|...|.. +.|.|.++++++.|.+-+++-.-+.... ..++...+|+++-+ -++
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 984332 222 2233478888886 4567999999999999999876522221 12244588998864 448
Q ss_pred EEEECCCcEEEEEccCC-------------------------------------------cc------------------
Q 002389 785 YIGCMDSSIQELAVSNN-------------------------------------------VE------------------ 803 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg-------------------------------------------~~------------------ 803 (929)
++|.....+++|+...+ ..
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 88888888888887211 00
Q ss_pred ---------ceecccccccccCCCCeEEEEEcCCceEEEEEec----CCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 002389 804 ---------REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV----EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 804 ---------~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~----dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp 870 (929)
....+.++...+|+..|.+++.+|++.++++... +-..|++|+..+....+.+.+|.-.|+.++|||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 0001112234567888899999988888776542 235799999999888889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE----EEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 871 DFIYLNYNSSASSLQIWLRGTQQK----VGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 dg~~LaSgS~DG~I~IWdl~sg~~----i~tl~~h~~-Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
||+||++.|.|.++.+|....... ....+.|.+ |++.+|+ +.+++|+|.|.+|+||..
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999999999999999998654322 344678877 7887765 668999999999999974
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.7e-16 Score=183.92 Aligned_cols=232 Identities=17% Similarity=0.185 Sum_probs=188.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEec-cCCCeEEeccCCCEEEEEecCCeEEEEeCCC-cee
Q 002389 689 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIA-TKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-TLK 766 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~-h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~ 766 (929)
+|+.+-+.++|.|+|.+|++++.||.|++|+..... .....+. +...|.++...+.++++++.+++|..|.... ...
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 799999999999999999999999999999976542 1122233 7778889999999999999999999999873 222
Q ss_pred ee--ccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 002389 767 DI--YRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 842 (929)
Q Consensus 767 ~l--~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI 842 (929)
.+ ...-++++++++ +|. +++|+.|-.|++.+..++... +...+|..+|.++.++|.+.++++.+ -||.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~------~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE------KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh------eeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 22 224568888888 666 778999999999999876543 34578899999999999999988776 67899
Q ss_pred EEEECCCCCeEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---CCeEEEEE--
Q 002389 843 KEWRRHRKPQISIAPEK--------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---SKITSLLT-- 909 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~h--------~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h---~~Vtsvs~-- 909 (929)
++||++++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..+++..+.+... +.+..++|
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 99999998876655432 235678999999888888888999999999999999888864 23555555
Q ss_pred cCCEEEEEECCCcEEEeec
Q 002389 910 ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 910 dg~~LaSgs~DG~I~IWdi 928 (929)
+|++||+++-||.|-|||.
T Consensus 243 nG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNV 261 (933)
T ss_pred CCcEEeeeccCCcEEEEec
Confidence 4899999999999999985
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=152.30 Aligned_cols=238 Identities=14% Similarity=0.156 Sum_probs=186.4
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCee---EEEEeccCCCcEEEEEEcCC----CCEEEEEe-CCCe
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFEP----GESLLSGS-ADKT 714 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~---~i~~l~gH~~~Vtslafspd----g~~LaSgs-~Dgt 714 (929)
...|.+.|.|.+|+ +.+|++|+.|++|++--++...+. .-.++.-|.+.|..++|-.+ |..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 34699999999999 559999999999999877654332 23456779999999999743 34477665 3666
Q ss_pred EEEEEccCCeEEEEEEeccCCCeEE-eccCCCEEEEEecCCeEEEEeCC--Cceeeecc--------CCCeEEEEEe-CC
Q 002389 715 IGVWQMVQRKLELIEVIATKEPIRK-LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR--------SKGIKSMSVV-QG 782 (929)
Q Consensus 715 IrIWDl~tg~~~~~~~~~h~~~V~s-~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~--------~~~V~sla~s-dg 782 (929)
|++-|..+|+. .....+|...|.+ +++++..+++|++|.+|++||++ .+..++.. ...|.++++. .|
T Consensus 165 iy~tdc~~g~~-~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 165 IYITDCGRGQG-FHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred EEEeecCCCCc-ceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 77777777763 3445688888887 47899999999999999999987 33333321 2347788886 77
Q ss_pred E-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----eEEEec
Q 002389 783 K-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----QISIAP 857 (929)
Q Consensus 783 ~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~----~i~~l~ 857 (929)
+ +++|..|.+..+||++.++.. +.+..|...|.++.++|...|+++++ -|..|++-|++... .+....
T Consensus 244 rll~sg~~dssc~lydirg~r~i------q~f~phsadir~vrfsp~a~yllt~s-yd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMI------QRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred ceeeeccCCCceEEEEeeCCcee------eeeCCCccceeEEEeCCCceEEEEec-ccceEEEeecccchhhcCceEEEE
Confidence 7 667889999999999997654 44567889999999999999999888 66799999987532 344566
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 858 EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 858 ~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
.|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 788999999999999889999999999999764
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=2.9e-16 Score=177.33 Aligned_cols=267 Identities=15% Similarity=0.129 Sum_probs=186.6
Q ss_pred EEEEEECCCeEEEEECCCCCee----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE-EEeccCC
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI-EVIATKE 735 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~----~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~-~~~~h~~ 735 (929)
.|+.+..||.|.++|.+..... .+..+..|.++|..+.|.|....|++++.|.++++||+.++++.-. ...+|..
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 7999999999999999865432 2355678999999999999555699999999999999998876544 3458888
Q ss_pred CeEE--ecc-CCCEEEEEecCCeEEEEeCCCce---------------ee-------e----c----cCC----CeEEEE
Q 002389 736 PIRK--LDT-YGKTIFASTQGHRMKVIDSSRTL---------------KD-------I----Y----RSK----GIKSMS 778 (929)
Q Consensus 736 ~V~s--~s~-~g~~L~sgs~Dg~V~IWDl~~~~---------------~~-------l----~----~~~----~V~sla 778 (929)
.|.+ |.+ +...+++|+.||.|.|||++-.. .. . . ... .|+.+.
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 8875 444 55689999999999999986100 00 0 0 011 244566
Q ss_pred EeCC-EEEEEEC-CCcEEEEEccCCccceecccccc--cccC---CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 002389 779 VVQG-KIYIGCM-DSSIQELAVSNNVEREIKAPFKS--WRLQ---SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 851 (929)
Q Consensus 779 ~sdg-~llsgs~-Dg~I~iwDl~tg~~~~i~~~~~~--~~~~---~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~ 851 (929)
|-|. .+++++. |+.|++||++......-+.+... +..+ ...+.++.....+.+..+.. .|++|+.||+....
T Consensus 226 fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 226 FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLS 304 (720)
T ss_pred EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccC
Confidence 6544 4777555 99999999987544322222211 1112 22344555555556655544 48899999986533
Q ss_pred --eEEEecCCCCC--eEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCC-eEEEEEcC---CEEEEEECCCc
Q 002389 852 --QISIAPEKGTT--IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAGSK-ITSLLTAN---DIVLCGTETGL 922 (929)
Q Consensus 852 --~i~~l~~h~~~--V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~-i~tl~~h~~-Vtsvs~dg---~~LaSgs~DG~ 922 (929)
++..+.++... -..-..+||+.++++|+.|...++|.+.+.+. ...+.+|.. |+++.|.+ .-++++++|-+
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 34444444331 11234589999999999999999999887655 566677754 99998863 25677799999
Q ss_pred EEEeec
Q 002389 923 IKGWIP 928 (929)
Q Consensus 923 I~IWdi 928 (929)
++||++
T Consensus 385 ~kiW~l 390 (720)
T KOG0321|consen 385 VKIWRL 390 (720)
T ss_pred eEEEec
Confidence 999986
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=9.7e-17 Score=163.36 Aligned_cols=237 Identities=12% Similarity=0.132 Sum_probs=177.6
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe--EEEEEEeccCCCeEEec--c--CCCEEEEEecCCeEEEEeC
Q 002389 688 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK--LELIEVIATKEPIRKLD--T--YGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~--~~~~~~~~h~~~V~s~s--~--~g~~L~sgs~Dg~V~IWDl 761 (929)
..|.+.|.++...-.|++|+||+.|++|||+.++++. .......+|.+||..+. . -|..+++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5799999999888899999999999999999998754 34456679999998643 2 5789999999999999997
Q ss_pred CCcee-----eeccCCCeEEEEEe-C--CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc---
Q 002389 762 SRTLK-----DIYRSKGIKSMSVV-Q--GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW--- 829 (929)
Q Consensus 762 ~~~~~-----~l~~~~~V~sla~s-d--g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~--- 829 (929)
.+..- ...+...|++++|. + |. +++++.||.|.+++..+...-.. .++...|...++++...|..
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---SKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---hhhhhccccccceeeecCcCCCc
Confidence 74311 11224569999995 3 33 78899999999999987521111 14446677788888877652
Q ss_pred -----------eEEEEEecCCCeEEEEECCCCC--eEEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEEECCCC
Q 002389 830 -----------LYSASSSVEGSNIKEWRRHRKP--QISIAPEKGTTIQAMAVVEDF----IYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 830 -----------i~~~s~S~dDgtI~IWDl~~~~--~i~~l~~h~~~V~slafSpdg----~~LaSgS~DG~I~IWdl~sg 892 (929)
..+++.+ .|+.|+||+.+.+. .-.++.+|.+.|+.++|.|.- .+|+++|.||++.||....-
T Consensus 165 ~~~~~~~~~~~krlvSgG-cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGG-CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred cccccCcccccceeeccC-CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 1234443 57899999987753 345688999999999999953 58999999999999975421
Q ss_pred --cEEEEEe-C-CCCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 893 --QKVGRIS-A-GSKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 893 --~~i~tl~-~-h~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+.-.++- . ...++.++|+ |++|+.++.|+.|.+|..
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1112221 1 2448888876 999999999999999963
No 124
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.73 E-value=8.4e-17 Score=177.53 Aligned_cols=242 Identities=15% Similarity=0.163 Sum_probs=174.7
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE----EEEEEe--ccCCCeEEeccCCCEEEEEecCCeEEE
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL----ELIEVI--ATKEPIRKLDTYGKTIFASTQGHRMKV 758 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~----~~~~~~--~h~~~V~s~s~~g~~L~sgs~Dg~V~I 758 (929)
..+++|+..|.++++.|.|.+|+|||.|.+|++||+..-.. .....+ .|......+++.++.|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 46789999999999999999999999999999999864211 111112 233333457899999999999999999
Q ss_pred EeCCCceee--ec-------------cCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCccc-eecccccccccCCCC
Q 002389 759 IDSSRTLKD--IY-------------RSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVER-EIKAPFKSWRLQSKP 819 (929)
Q Consensus 759 WDl~~~~~~--l~-------------~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~~-~i~~~~~~~~~~~~~ 819 (929)
+|-++.... .. +...++|-+|+ .+.+++++.||++++||+...... .+..+ +.-.+...+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-KPAGGKRVP 319 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee-ccCCCcccC
Confidence 998742211 11 11247788886 344999999999999999874432 22211 333455678
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCC---CeEEEecCCCC--CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-
Q 002389 820 INSLVVYKDWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKGT--TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ- 893 (929)
Q Consensus 820 I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~---~~i~~l~~h~~--~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~- 893 (929)
+++..+++++..++++. .||.|.+|+.... .....-..|.. .|++++||+||++|++-|.|+++++||++..+
T Consensus 320 ~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred ceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 99999999999866655 7899999997443 23445567776 99999999999999999999999999987654
Q ss_pred EEEEEeCC---CCeEE--EEEcCCEEEEEEC------CCcEEEeec
Q 002389 894 KVGRISAG---SKITS--LLTANDIVLCGTE------TGLIKGWIP 928 (929)
Q Consensus 894 ~i~tl~~h---~~Vts--vs~dg~~LaSgs~------DG~I~IWdi 928 (929)
++....+= .+-+. ++|+.++|++|+. .|++.+||.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 45544432 12233 5556778888765 466777763
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-15 Score=177.92 Aligned_cols=257 Identities=13% Similarity=0.158 Sum_probs=188.1
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|.+.-+.|+|. +.+|++++.||.|++|+....... ..++..|...|.+++- ++.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-CchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 4789999999998 459999999999999988765211 2333337888888875 4558999999999999999887
Q ss_pred eEEEEEEeccCCC--eEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 724 KLELIEVIATKEP--IRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 724 ~~~~~~~~~h~~~--V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
+... ......-+ +.+++.+|.+++.|+.|-.|++-++.. ....+.+ ..+|.++.++ ++. +++.+.||.|++|
T Consensus 87 ~~~~-iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDT-ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred Cccc-eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 6421 11223333 446788999999999999999999873 3444444 5679999997 666 6678899999999
Q ss_pred EccCCccceeccccc-ccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC--CCCCeEEEEEecCC
Q 002389 797 AVSNNVEREIKAPFK-SWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDF 872 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~-~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~--h~~~V~slafSpdg 872 (929)
|+.++.......... ..... ...+..+++||++...+... -|+.|++|+..+......+.. +...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999876543222111 11112 56678899999955544443 578999999999887665543 44459999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 002389 873 IYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d 910 (929)
+|||+++.||.|.|||.++... ......|.+++|.
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~ 279 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWK 279 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecC
Confidence 9999999999999999987221 1111347777765
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2e-16 Score=165.88 Aligned_cols=237 Identities=16% Similarity=0.254 Sum_probs=178.8
Q ss_pred EEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 002389 652 VTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 729 (929)
Q Consensus 652 Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~ 729 (929)
-.|+.|+ +.+||+|+.||.|.|||+.+.. .-+.+.+|..+|++++||+||+.|+|+|.|..|++||+..|.+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 7899999 6799999999999999999875 35678899999999999999999999999999999999888643111
Q ss_pred Ee-----------------------------ccCCCeE---------------E---eccCCCEEEEEecCCeEEEEeCC
Q 002389 730 VI-----------------------------ATKEPIR---------------K---LDTYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 730 ~~-----------------------------~h~~~V~---------------s---~s~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
.. ....++. + +..+|+++++|...|.+.+||..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 10 0011111 1 44568899999999999999987
Q ss_pred C--ceeeec--cCCCeEEEEEe-CCE-EEEEECCCcEEEEEccC----Cccceecccccccc-cCCCCeEEEEEcCCceE
Q 002389 763 R--TLKDIY--RSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN----NVEREIKAPFKSWR-LQSKPINSLVVYKDWLY 831 (929)
Q Consensus 763 ~--~~~~l~--~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~t----g~~~~i~~~~~~~~-~~~~~I~sl~~~~d~i~ 831 (929)
. +...+. ....|+.+.++ .|. ++..+.|..|+.|++.. |+.....+..+... .+...-.++.++.++.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 3 222222 23568888888 555 88899999999999873 22111111111100 01233456778889999
Q ss_pred EEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 832 SASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 832 ~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
.++.+..-..++||....|.+++.+.|.. .....+.|+|-...+++- ..|.|+||....
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 88888777899999999999999998876 467889999999888888 689999997543
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=4.8e-15 Score=163.52 Aligned_cols=264 Identities=17% Similarity=0.234 Sum_probs=204.4
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
..-|.|++|. ++-++||.++|+|.||+..+.+ ..+....|.+.|.+++...+|. |+||+.|+.|..||-.-.+...
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~--~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNR--ISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCce--EEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccccccc
Confidence 3789999999 7799999999999999997764 3455559999999999999886 5669999999999944444445
Q ss_pred EEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCcee--eeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCcc
Q 002389 728 IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 728 ~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~--~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~ 803 (929)
...+....+++.+.+.+.-++.|+..+.|..=.+.+... ..-+....+.++.+ +.++++++.|+.+++|+ ..+.
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 556677788999877666689998888887767664332 23345567788876 56699999999999999 2111
Q ss_pred ceecccccccc-cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 002389 804 REIKAPFKSWR-LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 804 ~~i~~~~~~~~-~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG 882 (929)
.|. .-..+..+..+||.+...+.+ ..|...+.|.++...++.-.. +.+++.+.|+|+|.+||.|+.|+
T Consensus 401 --------~wt~~~~d~~~~~~fhpsg~va~Gt--~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 401 --------EWTKIIEDPAECADFHPSGVVAVGT--ATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred --------eEEEEecCceeEeeccCcceEEEee--ccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCC
Confidence 111 126788999999999555544 457889999999777766555 88999999999999999999999
Q ss_pred cEEEEECCC-CcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 883 SLQIWLRGT-QQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 883 ~I~IWdl~s-g~~i~tl~~h--~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.|+||.+.. |........+ ++|+.+.|+ ++++.+-+.|-.|-.|.+
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 999998654 4443333222 669998876 789999999999999964
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.7e-16 Score=168.61 Aligned_cols=258 Identities=18% Similarity=0.236 Sum_probs=185.8
Q ss_pred EECC-CeEEEEECCCCCeeEEEEeccC-CCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCCeEEEEEEeccCCCeEEe-
Q 002389 665 GFSD-GSIKMWDIKKQSAMLVWDVKEH-RKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQRKLELIEVIATKEPIRKL- 740 (929)
Q Consensus 665 Gs~D-GtIrIWD~~~~~~~~i~~l~gH-~~~Vtslafspdg~~LaSgs~-DgtIrIWDl~tg~~~~~~~~~h~~~V~s~- 740 (929)
++.| .++.+||++++.. ..++++. ...-.++.. -.+.+++++.. -..+.+|.+....... ...-..+++.++
T Consensus 13 sS~d~~~~~~~dl~TGt~--~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTS--LLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALA 88 (476)
T ss_pred cCCCCcceeEEecCCCce--eEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhh-hhcccccceeeee
Confidence 3344 4599999999864 5566544 111111111 13466666654 4578999986543222 222345567776
Q ss_pred -ccCCCEEEEEecCCeEEEEeCC-Cce-eeeccC-CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCc---cceeccccc
Q 002389 741 -DTYGKTIFASTQGHRMKVIDSS-RTL-KDIYRS-KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNV---EREIKAPFK 811 (929)
Q Consensus 741 -s~~g~~L~sgs~Dg~V~IWDl~-~~~-~~l~~~-~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~---~~~i~~~~~ 811 (929)
++.|.+++.|+..|.+++|.+. +.+ ..+..+ ..|+|+.|+ ||. +++|+.||.|.+|++..-- ......|..
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 5778888888899999999988 333 333333 459999998 665 8999999999999986421 111335668
Q ss_pred ccccCCCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 812 SWRLQSKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 812 ~~~~~~~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.|..|.-+|+.+...+++. ...+.| .|.++++||+..+.++.++. ....+.+++.+|-++.+..|+.+|.|.+.++
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 8999999999999987743 334444 88999999999998776664 3467999999999999999999999999875
Q ss_pred CCC----------------cEEEEEeCC-C--CeEEEE--EcCCEEEEEECCCcEEEeec
Q 002389 890 GTQ----------------QKVGRISAG-S--KITSLL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 890 ~sg----------------~~i~tl~~h-~--~Vtsvs--~dg~~LaSgs~DG~I~IWdi 928 (929)
... ..+..+.+| + .|+|++ +||..|++|+.||.|+|||+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 432 235666677 3 599966 67999999999999999997
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=2.2e-15 Score=156.81 Aligned_cols=278 Identities=18% Similarity=0.203 Sum_probs=195.2
Q ss_pred CCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCe--------eEEE-----EeccCCCcEEEEEEcC-CCCEEEE
Q 002389 646 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA--------MLVW-----DVKEHRKAVTSFSLFE-PGESLLS 708 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~--------~~i~-----~l~gH~~~Vtslafsp-dg~~LaS 708 (929)
..|.|.|+++... +.++++|+.||.|.+||++.... +.+. .-.+|.-+|.++.|-| |...+.|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 3688999999998 55999999999999999985431 0111 1247888999999999 5556889
Q ss_pred EeCCCeEEEEEccCCeEEEEEEeccCCCeE--Eecc---CCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe
Q 002389 709 GSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDT---YGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV 780 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~---~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s 780 (929)
++.|.+++|||..+-+... .....+.|. +++| ..-.+++|..|-.|++.|+.. ....+.+ ...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~--~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV--DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeE--EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 9999999999998865432 233444454 3443 344788888889999999983 4445555 4569999997
Q ss_pred --CCE-EEEEECCCcEEEEEccCCc-c-------ceecccc-cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 781 --QGK-IYIGCMDSSIQELAVSNNV-E-------REIKAPF-KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 781 --dg~-llsgs~Dg~I~iwDl~tg~-~-------~~i~~~~-~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
... +++|+.||.|++||++... . ...++|. +.-..|...+..+++..++.+.++.+ .|..+++|+..
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-td~r~r~wn~~ 276 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-TDDRIRVWNME 276 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-CccceEEeecc
Confidence 233 7789999999999997631 1 1111111 11234667788888888888777666 45689999987
Q ss_pred CCCeEEEec---CCCC----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEE
Q 002389 849 RKPQISIAP---EKGT----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGT 918 (929)
Q Consensus 849 ~~~~i~~l~---~h~~----~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~dg~--~LaSgs 918 (929)
.|.-...-. .|.. .+. +. +-+...++---.|+.+.++++-.|..+..+..|.+ |.|..+.++ ...+|.
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~ 354 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD 354 (397)
T ss_pred cCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence 765211111 1111 111 22 33444444444579999999999999999999966 777766654 789999
Q ss_pred CCCcEEEeec
Q 002389 919 ETGLIKGWIP 928 (929)
Q Consensus 919 ~DG~I~IWdi 928 (929)
-|+.|..|-+
T Consensus 355 ~d~ni~~w~p 364 (397)
T KOG4283|consen 355 MNGNIYMWSP 364 (397)
T ss_pred cCCccccccc
Confidence 9999999975
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=1.1e-15 Score=167.41 Aligned_cols=278 Identities=15% Similarity=0.184 Sum_probs=199.2
Q ss_pred CCCCCEEEEEEe---C-CEEEEEECCCeEEEEECCCCC--eeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 002389 647 KCSGAVTALIYY---K-GLLCSGFSDGSIKMWDIKKQS--AMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQ 719 (929)
Q Consensus 647 gH~~~Vtsl~fs---~-~~LaSGs~DGtIrIWD~~~~~--~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrIWD 719 (929)
-|.+.|++++|+ + ..+++|..-|+|-+||+.+.. ..-+..+..|.++|.++.|+|.+. .+++.|.||+|+.-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 478999999998 3 379999999999999996322 234677889999999999999765 499999999999999
Q ss_pred ccCCeEEEEEEeccCCC-eEE--eccCCCEEEEEecCCeEEEEeCCCceeee----ccCCCeEEEEEe--CC-EEEEEEC
Q 002389 720 MVQRKLELIEVIATKEP-IRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDI----YRSKGIKSMSVV--QG-KIYIGCM 789 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~-V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l----~~~~~V~sla~s--dg-~llsgs~ 789 (929)
++++............. +.. +......++++..=|.+.+||.+..-..+ .+...|.++++. .. .+++++.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 98765432222222222 222 44566677777777799999988332222 234579999997 33 3889999
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEecC---CCCC
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAPE---KGTT 862 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~----~~~~i~~l~~---h~~~ 862 (929)
|++.+|||++.-..+.- |.-....|...|.+..++|.+..+++.+ .|..|++||.. .-....++.+ +..+
T Consensus 344 D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW 420 (498)
T ss_pred CcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeec-cCCceEEeecccccccCCccceeeccCccccc
Confidence 99999999986332221 1122345788999999999988777766 67899999973 2222222221 2222
Q ss_pred --eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEE---EEEcCC-EEEEEECCCcEEEee
Q 002389 863 --IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITS---LLTAND-IVLCGTETGLIKGWI 927 (929)
Q Consensus 863 --V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~--~Vts---vs~dg~-~LaSgs~DG~I~IWd 927 (929)
.....|.|+..+++.|-.-..|-|+|-..++.+..+.... .|.+ +.|-+. +++.|+..|.|+||-
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 3346899999999999999999999999999888876552 2444 444456 566666788999984
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=7.9e-17 Score=185.20 Aligned_cols=235 Identities=16% Similarity=0.264 Sum_probs=177.4
Q ss_pred CEEEEEEe---CCEEEEEECCCeEEEEECCCC-CeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeE
Q 002389 651 AVTALIYY---KGLLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 651 ~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~-~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~ 725 (929)
.+..|.|+ +++|||++..|.|.+||+... ..+.+..|..|+..|+++.|++...+ |+|||.||+|++||++..+-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 34556665 679999999999999999862 11346678999999999999997765 89999999999999987653
Q ss_pred EEEEEeccCCCeEE--ecc-CCCEEEEEecCCeEEEEeCCCce---eeec-cCCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 726 ELIEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSSRTL---KDIY-RSKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 726 ~~~~~~~h~~~V~s--~s~-~g~~L~sgs~Dg~V~IWDl~~~~---~~l~-~~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
.. ...+..+.|+. |+| .++.++++..+|.+..||+++.- ..+. +.+.|.|+.|+ ++. +++|+.|+.|++|
T Consensus 169 ~~-t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KS-TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred cc-cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 32 22234555653 554 46788999999999999998533 3333 35679999998 433 8889999999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCCC-CeEEEecCCCCCeEEEEEec-CC
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVE-DF 872 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S--~dDgtI~IWDl~~~-~~i~~l~~h~~~V~slafSp-dg 872 (929)
|+.++....... -....++..+.+-|...+.++.+ ..|..|++||++.. -+..++..|+..++.++|.. |.
T Consensus 248 d~t~~~~~~~~t-----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 248 DMTDSRAKPKHT-----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred eccCCCccceeE-----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCc
Confidence 998765433210 11257889999999877654433 36789999997654 45678889999999999965 67
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 002389 873 IYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~s 891 (929)
..+.+++.||+|.--..++
T Consensus 323 ~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeeEeecCccHHHHhhhhc
Confidence 7889999999987654443
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=9.9e-16 Score=164.07 Aligned_cols=239 Identities=12% Similarity=0.176 Sum_probs=174.6
Q ss_pred CCCCCEEEEEEe--CC--EEEEEECCCeEEEEECCC--------------CCeeEEEEeccCCCcEEEEEEcCCCC-EEE
Q 002389 647 KCSGAVTALIYY--KG--LLCSGFSDGSIKMWDIKK--------------QSAMLVWDVKEHRKAVTSFSLFEPGE-SLL 707 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~--~LaSGs~DGtIrIWD~~~--------------~~~~~i~~l~gH~~~Vtslafspdg~-~La 707 (929)
+|.+.|+.+..+ ++ +.++=+..|.|+|||+.. .+.++++++.+|.+.=+.++|||-.. .|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 677777777776 33 677788899999999852 12247889999999999999999333 388
Q ss_pred EEeCCCeEEEEEccCCeEEEEEE--eccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe---CC
Q 002389 708 SGSADKTIGVWQMVQRKLELIEV--IATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QG 782 (929)
Q Consensus 708 Sgs~DgtIrIWDl~tg~~~~~~~--~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s---dg 782 (929)
||..-+.|++|...+|....-.. .+| ...|-.+.|+ ++
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH-------------------------------------~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGH-------------------------------------TKSVEDLQWSPTEDG 271 (440)
T ss_pred cCccccceEeeeeccCceeecCcccccc-------------------------------------ccchhhhccCCccCc
Confidence 99889999999998876422111 112 2335555554 45
Q ss_pred EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeEEEecCC
Q 002389 783 KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQISIAPEK 859 (929)
Q Consensus 783 ~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~---~~~i~~l~~h 859 (929)
-+++++.||+|+|||++.+..+.. -..+.|..-|+.+.++....++++++ +||+++|||++. +.++..++.|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~lLasG~-DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREPLLASGG-DDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred eEEeeecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcceeeecC-CCceEEEEEhhhccCCCcceeEEec
Confidence 577777888888888887643322 12256788999999998877555554 899999999754 5678899999
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------------------cEEEEEeCCCCeEEEEEc---CCEEEE
Q 002389 860 GTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQ-------------------QKVGRISAGSKITSLLTA---NDIVLC 916 (929)
Q Consensus 860 ~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg-------------------~~i~tl~~h~~Vtsvs~d---g~~LaS 916 (929)
..+|+++.|+| +...|+++|.|..|.+||+.-- ++++...+...|..+.|+ +.++++
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 99999999998 4567888889999999996421 123333333447788887 569999
Q ss_pred EECCCcEEEeec
Q 002389 917 GTETGLIKGWIP 928 (929)
Q Consensus 917 gs~DG~I~IWdi 928 (929)
.+.|| +.||.+
T Consensus 427 Ta~dG-fnVfkt 437 (440)
T KOG0302|consen 427 TAIDG-FNVFKT 437 (440)
T ss_pred ecccc-eeEEEe
Confidence 99999 777764
No 133
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.1e-16 Score=174.51 Aligned_cols=254 Identities=14% Similarity=0.168 Sum_probs=187.6
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCC------CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK------QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~------~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
.|.+.|+.+.|. ...|++|+.||++++|++.. ...+++.+|.+|.++|.|+++.++++.++|||.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 789999999998 55899999999999999932 2335899999999999999999999999999999999999
Q ss_pred EccCC---------eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCcee-eecc---CCCeEEEEEeCCE
Q 002389 719 QMVQR---------KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLK-DIYR---SKGIKSMSVVQGK 783 (929)
Q Consensus 719 Dl~tg---------~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~-~l~~---~~~V~sla~sdg~ 783 (929)
++... ........+|.+.+.. ++...+.+++++.||+++.|+...... ++.. +..-.++.+...+
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 65321 1223345588888864 567778899999999999999874333 2222 3335566665333
Q ss_pred ---EEEEECCCcEEEEEccCCccceecccccc-cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC
Q 002389 784 ---IYIGCMDSSIQELAVSNNVEREIKAPFKS-WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK 859 (929)
Q Consensus 784 ---llsgs~Dg~I~iwDl~tg~~~~i~~~~~~-~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h 859 (929)
.++...-+.-.+++...+....+...... -......+..+..||..-+.++.. +|+.|+++|..++.++.....|
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h-ed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH-EDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc-cCCceecccccccccchheeec
Confidence 22233333333444444333222111000 001134566777888877666655 7899999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 860 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 860 ~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
...++++++.|+|.+|++|+.||.+++|......++.....|
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999999999999999887777766655
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.7e-15 Score=159.05 Aligned_cols=223 Identities=15% Similarity=0.185 Sum_probs=150.9
Q ss_pred EEECCCCCee---EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-----EEEEEeccCCCeEEeccCC
Q 002389 673 MWDIKKQSAM---LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-----ELIEVIATKEPIRKLDTYG 744 (929)
Q Consensus 673 IWD~~~~~~~---~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~-----~~~~~~~h~~~V~s~s~~g 744 (929)
-|+.+..+.. .+..+++|.+.|++++|+.||++|+|++.|++|++|++++-.. ..............|.|+.
T Consensus 65 ~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 65 QWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 4555544321 2346789999999999999999999999999999999976321 1111111111123466666
Q ss_pred CEEE-EEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEE
Q 002389 745 KTIF-ASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 823 (929)
Q Consensus 745 ~~L~-sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl 823 (929)
+-++ ++-.++++++|.+.+... | +..-...-||-- ..-..|..++..+
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~d---------------G-----~~~~~~v~~D~~-----------~f~~kh~v~~i~i 193 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTD---------------G-----SGSHHFVHIDNL-----------EFERKHQVDIINI 193 (420)
T ss_pred ceEEEEEccCCEEEEEEeeeccc---------------C-----CCCccccccccc-----------ccchhcccceEEE
Confidence 5443 334445777776542211 0 000011111200 0112345566666
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC---CCC-----cEE
Q 002389 824 VVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR---GTQ-----QKV 895 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl---~sg-----~~i 895 (929)
-.-.+..++++.+ .|..|.+|++. |+.+.........-+..+.||+|+++++++..-.|++|.. ++| ..+
T Consensus 194 GiA~~~k~imsas-~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 194 GIAGNAKYIMSAS-LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred eecCCceEEEEec-CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 6677888888877 77899999999 7777777766667778899999999999999999999983 333 236
Q ss_pred EEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 896 GRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 896 ~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
..+++|. .|..++|+ ...+++.+.||+++|||+
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 7888995 49998887 569999999999999985
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.7e-17 Score=185.65 Aligned_cols=227 Identities=20% Similarity=0.284 Sum_probs=182.4
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.|...|.|+..- ...+++|+.|..+-+|.+..... +..+.+|..+|.++.|+++...|++|+.||+|++||+..++
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 578888888764 55899999999999999987654 55689999999999999999999999999999999999876
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCc
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~ 802 (929)
... ...+|...+.+ |.|.+.+.+.|+.|+.+++||.++. .
T Consensus 104 ~vr-tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-------------------------------------G 145 (825)
T KOG0267|consen 104 IVR-TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-------------------------------------G 145 (825)
T ss_pred hhh-hhhccccCcceeeeccceEEeccccccccceehhhhcc-------------------------------------C
Confidence 332 34456665554 5566666666777777766666421 1
Q ss_pred cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG 882 (929)
. ...+.+|...+..+.+.|++.+.+... +|.++++||...|++...|.+|.+.+.++.|+|..-.+++||.|+
T Consensus 146 c------~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 146 C------SHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred c------eeeecCCcceeEEEeecCCCceeeccC-CcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 1 122344567788899999999988776 789999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECC
Q 002389 883 SLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTET 920 (929)
Q Consensus 883 ~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~D 920 (929)
++++||+++.+.+...... ..|.+..|+ +..+.+|..+
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999988887766 459998887 5566666554
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=1.6e-15 Score=171.40 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=171.5
Q ss_pred CCCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~t 722 (929)
..|.+.|..+.|-++ .|++++.|.+++.||+++.+..-...+.||++.|.+++|.|++.. +++|+.||.|.|||++-
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 479999999999944 899999999999999998876444458899999999999998876 89999999999999864
Q ss_pred CeEE-----E-EEEec--------------------cCCCeEE-----eccCCCEEEEEec-CCeEEEEeCCCceeeec-
Q 002389 723 RKLE-----L-IEVIA--------------------TKEPIRK-----LDTYGKTIFASTQ-GHRMKVIDSSRTLKDIY- 769 (929)
Q Consensus 723 g~~~-----~-~~~~~--------------------h~~~V~s-----~s~~g~~L~sgs~-Dg~V~IWDl~~~~~~l~- 769 (929)
.... + ..... +...|.+ +..|...+++++. |+.|++||+++....+.
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 3210 0 00001 1111221 3357778888887 99999999984332221
Q ss_pred ----------c---CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCC--CeEEEEEcCCceEE
Q 002389 770 ----------R---SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK--PINSLVVYKDWLYS 832 (929)
Q Consensus 770 ----------~---~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~--~I~sl~~~~d~i~~ 832 (929)
+ ..++.++... ...+++.|.|+.|+.|++.+-.... ...+.++.. .-..-..++++.++
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP----~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP----VAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc----hhhccCcccceeeeeeecCCCCceE
Confidence 1 1235566554 3458889999999999998743322 122222211 11122345888888
Q ss_pred EEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC
Q 002389 833 ASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 833 ~s~S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpd-g~~LaSgS~DG~I~IWdl~sg 892 (929)
++++ .|...++|.+..-. ....+.||...|++++|.|. -.-+++++.|..++||++.++
T Consensus 333 ~SgS-sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGS-SDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccC-CCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 8877 56789999987644 45567899999999999873 334667799999999997654
No 137
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.68 E-value=9.5e-16 Score=168.14 Aligned_cols=213 Identities=8% Similarity=0.086 Sum_probs=161.6
Q ss_pred ccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCcee
Q 002389 688 KEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK 766 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~ 766 (929)
-.|.+.|+.+.+.|.... +++++..+.|.|||..+..-.. .... ....+..+.|..+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~--------~~~~-~~~Pdl~L~gH~~------------- 178 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP--------KASG-ECRPDLRLKGHEK------------- 178 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc--------cccc-cCCCceEEEeecc-------------
Confidence 368999999999998877 6677888999999986432100 0010 2223333444333
Q ss_pred eeccCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 002389 767 DIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 842 (929)
Q Consensus 767 ~l~~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI 842 (929)
.-.+++|+ .|.+++++.|+.|.+||+..... .....+...+.+|...|..+++|+-.....++..+|+.+
T Consensus 179 ------eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L 252 (422)
T KOG0264|consen 179 ------EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKL 252 (422)
T ss_pred ------cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeE
Confidence 02234444 67899999999999999987544 234455677889999999999998765554444589999
Q ss_pred EEEECC--CCCeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc-EEEEEeCCCC-eEEEEEcC---CEE
Q 002389 843 KEWRRH--RKPQISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQ-KVGRISAGSK-ITSLLTAN---DIV 914 (929)
Q Consensus 843 ~IWDl~--~~~~i~~l~~h~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg~-~i~tl~~h~~-Vtsvs~dg---~~L 914 (929)
.|||.+ +.+......+|++.|++++|+| ++..|||||.|++|.+||+++.. ++.++.+|.. |.+|.|++ ..|
T Consensus 253 ~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 253 MIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred EEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCcee
Confidence 999998 5666778889999999999999 66778999999999999987754 5899999955 99999984 499
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
+++|.||++.|||+
T Consensus 333 ASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDL 346 (422)
T ss_pred EecccCCcEEEEec
Confidence 99999999999996
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.67 E-value=7.6e-14 Score=154.15 Aligned_cols=265 Identities=12% Similarity=0.171 Sum_probs=198.1
Q ss_pred CCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEE-EeccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 649 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVW-DVKEH-RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 649 ~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~-~l~gH-~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+..|....|+ ++.+++++ .|.+..|+.+++.....+ .+..+ +..|.|++|.++|+ ++||..+|+|.||+..+.
T Consensus 200 ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN 277 (626)
T ss_pred cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence 5677888898 34555555 588999999987653222 33333 36799999999987 789999999999999877
Q ss_pred eEEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCC-Cceeee--c-cCCCeEEEEEeCCEEEEEECCCcEEEEEc
Q 002389 724 KLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS-RTLKDI--Y-RSKGIKSMSVVQGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~-~~~~~l--~-~~~~V~sla~sdg~llsgs~Dg~I~iwDl 798 (929)
+...... .|...|.++. .....+++|+.|..|..||-+ +..+.. + .-..++.++-..+.++.|...+.|-.=.+
T Consensus 278 ~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 278 RISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred eEEeEee-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 6554444 8999998764 233455669999999999944 222221 1 23457777766555899998888877777
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg 878 (929)
.++....+ .+|......++.||+....++.+ .|+.+++|+ ..+..... .-..++.++.|+|.| .++.|
T Consensus 357 ~~~f~~~v-------~gh~delwgla~hps~~q~~T~g-qdk~v~lW~-~~k~~wt~--~~~d~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 357 ENGFTLTV-------QGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN-DHKLEWTK--IIEDPAECADFHPSG-VVAVG 424 (626)
T ss_pred cCCceEEE-------EecccceeeEEcCCChhheeecc-CcceEEEcc-CCceeEEE--EecCceeEeeccCcc-eEEEe
Confidence 76554443 56788889999999887777766 789999999 32222222 245678999999999 99999
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 879 SSASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 879 S~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
+..|...+.|.++...+.......+++++.+ +|.+||.|+.|+.|+||.+
T Consensus 425 t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999777766666666777765 5889999999999999964
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.67 E-value=1.5e-15 Score=172.45 Aligned_cols=239 Identities=12% Similarity=0.125 Sum_probs=190.0
Q ss_pred CCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEEcc
Q 002389 647 KCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE---PGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 647 gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp---dg~~LaSgs~DgtIrIWDl~ 721 (929)
+-.-.|.+++.+ + .+||+|..-|+++||++...+. ...+..|...|.|+.|+. ..+.|++++.|+-|+|+|+.
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 446689999999 3 3899999999999999987643 567789999999999984 24569999999999999997
Q ss_pred CCeEEEEEEeccCCCeEEe--ccCC--CEEEEEecCCeEEEEeCC--Cceeeec------cCCCeEEEEEe--CCEEEEE
Q 002389 722 QRKLELIEVIATKEPIRKL--DTYG--KTIFASTQGHRMKVIDSS--RTLKDIY------RSKGIKSMSVV--QGKIYIG 787 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~--s~~g--~~L~sgs~Dg~V~IWDl~--~~~~~l~------~~~~V~sla~s--dg~llsg 787 (929)
..-.......+|...|+++ ...| ..+++++.|..|.+--.. .....+. .+..+..|++. -+.++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 6554455566889999874 4444 578888988876544332 1111111 23457788886 4558899
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
+.|..|++||+.+|+......+ -..|.+..-.+...|.++|+++.. .|+++.++|..+++++....||...|+.+.
T Consensus 615 cQDrnirif~i~sgKq~k~FKg---s~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKG---SRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred ecccceEEEeccccceeeeecc---cccCCCceEEEEECCCccEEEEee-cCCceEEEEeccchhhhhhcCcchheeeee
Confidence 9999999999999887654432 244556677788899999988755 789999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCC
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
|.+|-+.|++.+.||.|.||.+..
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchhheeecCCceEEEEECch
Confidence 999999999999999999998654
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.66 E-value=3.9e-15 Score=163.65 Aligned_cols=257 Identities=9% Similarity=0.043 Sum_probs=186.7
Q ss_pred EECCCeEEEEECCCCCeeEEEEeccC--CCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCC--eEEEEEEeccC-CCeE
Q 002389 665 GFSDGSIKMWDIKKQSAMLVWDVKEH--RKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQR--KLELIEVIATK-EPIR 738 (929)
Q Consensus 665 Gs~DGtIrIWD~~~~~~~~i~~l~gH--~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg--~~~~~~~~~h~-~~V~ 738 (929)
++...++++||+...+.. -.+-.| ...+.++.|+..+.. +++.+.|+.+++|.-... +.......+.. ....
T Consensus 8 aS~gd~~kl~D~s~~~~~--~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETK--SEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eccCCceEEeecccccCc--cccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 344456899999865432 222222 234889999876643 445567889999975432 22221111111 1111
Q ss_pred EeccCCCEEEEEecCCeEEEEeCCCce--eeecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceeccccccc
Q 002389 739 KLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 813 (929)
Q Consensus 739 s~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~ 813 (929)
+......++++|+.++.|+|||+.... +.+.. ...|+++.+. |..+++++..|.|.+..+.++...... -
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f-----~ 160 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF-----T 160 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce-----e
Confidence 122334799999999999999998432 22222 3569999997 677999999999999999886543321 1
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE-EEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 002389 814 RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI-SIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 814 ~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i-~~l~~h~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~s 891 (929)
...+..+.-+.+++...+.++...++|.|.+||.++...+ .....|..+...|+|+| +...|++.+.|..|.+||...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 2236677789999988877776669999999999876544 45567999999999999 567789999999999999999
Q ss_pred CcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 892 QQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 892 g~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.+....+...++..+++|. |.+|+.|+..|.|..||+
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 8888899888898888875 889999999999999986
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.66 E-value=5e-15 Score=168.74 Aligned_cols=278 Identities=16% Similarity=0.182 Sum_probs=198.0
Q ss_pred CCCCCCEEEEEEe---C-C-EEEEEECCCeEEEEECCCCCe-------------------eEEE----------EeccCC
Q 002389 646 HKCSGAVTALIYY---K-G-LLCSGFSDGSIKMWDIKKQSA-------------------MLVW----------DVKEHR 691 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~-~-~LaSGs~DGtIrIWD~~~~~~-------------------~~i~----------~l~gH~ 691 (929)
.||.+.|.+++|. + . +|+|||.|..||||.+.-... .... .+.||.
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 4999999999997 2 3 799999999999998753220 0111 124999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC--eEEEEEEecc----CCCeE--EeccCCCEEEEEecCCeEEEEeCCC
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQR--KLELIEVIAT----KEPIR--KLDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg--~~~~~~~~~h----~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
+.|.++.|+|.+..|+|+|.|+++.+|...+. -.......+. ..... -|+++++.+++-+..|..++|....
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 99999999999999999999999999987654 2322222221 12233 2789999999999999999998332
Q ss_pred -c----eeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCcc--ceecccccccccCCCCeEEEEEcCCceEEE
Q 002389 764 -T----LKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVE--REIKAPFKSWRLQSKPINSLVVYKDWLYSA 833 (929)
Q Consensus 764 -~----~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~--~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~ 833 (929)
. ...+.+ -+.|++++|+ .|. +++.+.|.+-++|-.-..+. .++ ...+.|+..++++.+-+.....+
T Consensus 348 ~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi----aRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI----ARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee----cccccccccceeeehccCCceee
Confidence 1 111222 3569999997 454 88999999999987652111 222 12245677777777766333333
Q ss_pred EEecCCCeEEEEECC-------------------------------------------CCC-------------------
Q 002389 834 SSSVEGSNIKEWRRH-------------------------------------------RKP------------------- 851 (929)
Q Consensus 834 s~S~dDgtI~IWDl~-------------------------------------------~~~------------------- 851 (929)
++. +.+.+|+|+.. +|.
T Consensus 424 SgA-dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 424 SGA-DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred ecc-cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 322 23333333221 000
Q ss_pred --------------eEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCcEEEEEeCCCC-eEEEEEc-
Q 002389 852 --------------QISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-----SLQIWLRGTQQKVGRISAGSK-ITSLLTA- 910 (929)
Q Consensus 852 --------------~i~~l~~h~~~V~slafSpdg~~LaSgS~DG-----~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d- 910 (929)
.++.+.||...|++++.+|+|+++||++... .|++|+..+...++.+.+|+- |+.++|+
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 1234568999999999999999999998653 589999999999999999965 9998875
Q ss_pred -CCEEEEEECCCcEEEeec
Q 002389 911 -NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 911 -g~~LaSgs~DG~I~IWdi 928 (929)
|++|++.+.|+++.+|..
T Consensus 583 dg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred CCcEEEEeecCceEEeeee
Confidence 889999999999999974
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.5e-15 Score=170.89 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=188.8
Q ss_pred CCEEEEEEeCC--EEEEEECCCeEEEEECCCCCe--eEEEEeccCC---CcEEEEEEcC-CCCEEEEEeCCCeEEEEEcc
Q 002389 650 GAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSA--MLVWDVKEHR---KAVTSFSLFE-PGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 650 ~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~--~~i~~l~gH~---~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~ 721 (929)
.....|..+.+ .++.++. ...+||.+..... .....++.-. -.+..+.|.. +.++|+|++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 44555666522 4554443 3566666653321 1222222111 2345677774 34569999999999999997
Q ss_pred CC--eEEEEEEeccCCCeEEec---cCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe---CCEEEEEECC
Q 002389 722 QR--KLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV---QGKIYIGCMD 790 (929)
Q Consensus 722 tg--~~~~~~~~~h~~~V~s~s---~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s---dg~llsgs~D 790 (929)
.. +........|...+.++. ....++++|++||+|++||++. ...++.. ...|+.+.|+ +..++++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 62 112223446888888765 3567999999999999999983 3334444 4569999996 4458899999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCCCeEEEEEe
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVV 869 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-h~~~V~slafS 869 (929)
|.++.||++....-. ..+..|.+++.++.+||+..++++++ .|+.|+|||..+++......- ...+|.++.|-
T Consensus 199 G~lqlWDlRqp~r~~-----~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCE-----KKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred ceEEEeeccCchhHH-----HHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 999999998743322 34567999999999999999999988 889999999886553332222 34689999999
Q ss_pred cCCCE-EEEEe--CCCcEEEEECCC-CcEEEEEeCCCC-eEEEEEcC---CEEEEEECCCcEE
Q 002389 870 EDFIY-LNYNS--SASSLQIWLRGT-QQKVGRISAGSK-ITSLLTAN---DIVLCGTETGLIK 924 (929)
Q Consensus 870 pdg~~-LaSgS--~DG~I~IWdl~s-g~~i~tl~~h~~-Vtsvs~dg---~~LaSgs~DG~I~ 924 (929)
|+..+ |++++ .|-.|+|||+.. --+..++..|.. ++.++|++ ..+.+++.||+|.
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 97765 55555 688999999754 345788888966 77799974 4888999999864
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=4.6e-15 Score=162.06 Aligned_cols=230 Identities=18% Similarity=0.244 Sum_probs=169.3
Q ss_pred CCEEEEEECCCeEEEEECCCCCe-eEEEE------------------eccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEE
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSA-MLVWD------------------VKEHRKAVTSFSLFEPGES-LLSGSADKTIGVW 718 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~-~~i~~------------------l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIW 718 (929)
++++|.|+.|-.|.|||+.-... .+..+ -.+|+++|.+++|+.+-+. |+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 45999999999999999863211 01111 2379999999999876655 8999999999999
Q ss_pred EccCCeEEEEEEeccCCCeEEeccC---CCEEEEEecCCeEEEEeCC---CceeeeccCCCeEEEEEe---CCEEEEEEC
Q 002389 719 QMVQRKLELIEVIATKEPIRKLDTY---GKTIFASTQGHRMKVIDSS---RTLKDIYRSKGIKSMSVV---QGKIYIGCM 789 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~s~~---g~~L~sgs~Dg~V~IWDl~---~~~~~l~~~~~V~sla~s---dg~llsgs~ 789 (929)
|+.+|++... ...|...|.++.++ +..+++|+.|++|.+.|.+ .....+.....|-.++|. ...++++..
T Consensus 272 D~~~g~p~~s-~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSS-ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCccee-hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999986443 33588889987654 5589999999999999998 333444456778889986 344888999
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC---CCCeEEE
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK---GTTIQAM 866 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h---~~~V~sl 866 (929)
||+++-+|++... .+....+.|..+|..+.++.....+++....++.+++|++....... ...| -+...|.
T Consensus 351 dG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 351 DGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-VKEHSFKLGRLHCF 424 (463)
T ss_pred CceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-cccccccccceeec
Confidence 9999999999854 22234467888999999887665555555578999999976543211 1122 2235666
Q ss_pred EEecCCC-EEEEEeCCCcEEEEECCCCcEE
Q 002389 867 AVVEDFI-YLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 867 afSpdg~-~LaSgS~DG~I~IWdl~sg~~i 895 (929)
++.|+-. +++.|+..+.++|||+.+...+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 7777654 5677888888999998877654
No 144
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=3.3e-15 Score=153.76 Aligned_cols=277 Identities=14% Similarity=0.171 Sum_probs=186.8
Q ss_pred CCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.+.|+++.|. +++|++|..-|.|++|++.+... ...++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 899999999998 77999999999999999998764 44455 57889999998887 568999999999999998765
Q ss_pred EEEEEEeccCCC-eE--EeccCCC---EEEEE-ecCC-eEEEEeCCCceeee-------ccCCCeEEEEEe--CCE---E
Q 002389 725 LELIEVIATKEP-IR--KLDTYGK---TIFAS-TQGH-RMKVIDSSRTLKDI-------YRSKGIKSMSVV--QGK---I 784 (929)
Q Consensus 725 ~~~~~~~~h~~~-V~--s~s~~g~---~L~sg-s~Dg-~V~IWDl~~~~~~l-------~~~~~V~sla~s--dg~---l 784 (929)
......+....- .. ++.+.++ .+... +.+. .+++-|.....+.. .+.+.+.|..+. .+. +
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 433322211110 00 1222221 11111 1100 12223332211111 113346677654 333 6
Q ss_pred EEEECCCcEEEEEccCCccceeccc-----ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC--C--eEEE
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAP-----FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK--P--QISI 855 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~-----~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~--~--~i~~ 855 (929)
++|-.+|.+.+||+.++... ++.+ ......|.+++.++.+.+.....++.+++| .+..|+++.. . ....
T Consensus 169 laGyEsghvv~wd~S~~~~~-~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKI-IQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEeccCCeEEEEEccCCcee-eccccccccccchhhccCcceeeeechhhcCCcCCCccc-cceeeeeccccCcccccce
Confidence 67889999999999987322 1111 011234678888888876544445554443 5777776432 2 1122
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcC--CEEEEEECCCcEEEeec
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAN--DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~dg--~~LaSgs~DG~I~IWdi 928 (929)
..-....|..+..-||++.+||++.|+.|+||+.++++++..++-|.. |++++|++ ..+++||.|++|.+|+.
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 222344688899999999999999999999999999999999999955 99999984 49999999999999985
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.2e-15 Score=182.68 Aligned_cols=240 Identities=15% Similarity=0.144 Sum_probs=175.5
Q ss_pred CCCEEEEEEe------CCEEEEEECCCeEEEEECCC----CCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q 002389 649 SGAVTALIYY------KGLLCSGFSDGSIKMWDIKK----QSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGV 717 (929)
Q Consensus 649 ~~~Vtsl~fs------~~~LaSGs~DGtIrIWD~~~----~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrI 717 (929)
...-+.++|. .|.|+.|..||.|.+||... .+...+.+...|+++|..+.|++.+. .|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 4456677785 24799999999999999875 22235667789999999999999877 7999999999999
Q ss_pred EEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe--CCE-EEEEECCCcEE
Q 002389 718 WQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGK-IYIGCMDSSIQ 794 (929)
Q Consensus 718 WDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s--dg~-llsgs~Dg~I~ 794 (929)
||+.+.+.. +++. .......|.+++|. ..+ +++++.+|.+.
T Consensus 144 WDlnn~~tP-------------~~~~-----------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 144 WDLNKPETP-------------FTPG-----------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred eccCCcCCC-------------CCCC-----------------------CCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 999764311 0100 00112346666665 122 55677777888
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEE-EEecCC--CeEEEEECCC-CCeEEEecCCCCCeEEEEEec
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA-SSSVEG--SNIKEWRRHR-KPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~-s~S~dD--gtI~IWDl~~-~~~i~~l~~h~~~V~slafSp 870 (929)
+||++..+...-. ........+..+.+||+...-+ ..+.+| -.|.+||++. ....+++.+|...|.++.|++
T Consensus 188 iWDlr~~~pii~l----s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 188 IWDLRKKKPIIKL----SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred eccccCCCccccc----ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCC
Confidence 8888764321110 0011124477899999865433 233233 3899999754 456778899999999999998
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc---CCEEEEEECCCcEEEeec
Q 002389 871 DF-IYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA---NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 dg-~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d---g~~LaSgs~DG~I~IWdi 928 (929)
.+ .+++|++.|+.|.+|+.++|+.+..+... +++..+.|. +..+++++-||.|.|+.+
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 55 89999999999999999999999999875 558888887 458999999999999875
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=5.7e-14 Score=153.64 Aligned_cols=231 Identities=11% Similarity=0.183 Sum_probs=163.9
Q ss_pred cEEEEEEcC-------CCCEEEEEeCCCeEEEEEccCCeE--EEEE------------------EeccCCCeEEeccC--
Q 002389 693 AVTSFSLFE-------PGESLLSGSADKTIGVWQMVQRKL--ELIE------------------VIATKEPIRKLDTY-- 743 (929)
Q Consensus 693 ~Vtslafsp-------dg~~LaSgs~DgtIrIWDl~tg~~--~~~~------------------~~~h~~~V~s~s~~-- 743 (929)
...|++|.. -|+++|.|..|..|.|||+.--.. .+.. ..+|+..|.+++.+
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345677753 367899999999999999853211 1111 11344445444433
Q ss_pred -CCEEEEEecCCeEEEEeCC--Cceeeec-cCCCeEEEEEe--CCE-EEEEECCCcEEEEEccCCccceecccccccccC
Q 002389 744 -GKTIFASTQGHRMKVIDSS--RTLKDIY-RSKGIKSMSVV--QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 744 -g~~L~sgs~Dg~V~IWDl~--~~~~~l~-~~~~V~sla~s--dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
.+.+++|+.|.+|++||+. ++...+. +++.|.++.|+ ... +++|+.|+++.+.|.+...... +.|+.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-----~~wk~- 328 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-----KEWKF- 328 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-----ceEEe-
Confidence 4579999999999999998 4555555 46779999997 333 8899999999999998522111 22332
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCcE
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V~slafSpd-g~~LaSgS~DG~I~IWdl~sg~~ 894 (929)
...|-.+.+++......-.+.+||+++-+|++. ++++.++..|.+.|.++++++. ..+++++|.|+.|++|++..-.+
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 456777888776655544556899999999765 5889999999999999999874 45789999999999999754433
Q ss_pred --EEEEeCC-CCeEEEEEcC---CEEEEEECCCcEEEeecC
Q 002389 895 --VGRISAG-SKITSLLTAN---DIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 895 --i~tl~~h-~~Vtsvs~dg---~~LaSgs~DG~I~IWdil 929 (929)
+...... +...|+++++ -+++.||..+.++|||++
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 2222111 2345566663 488999999999999974
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=161.54 Aligned_cols=265 Identities=16% Similarity=0.215 Sum_probs=190.8
Q ss_pred CEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 651 AVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 651 ~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
.|..++|. || .|+.+. +..+.+||...+. .++++++|.+.|+|++|+.||+.++||+.|+.|.+|+-.- +-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 78899998 44 444433 3468899999885 4899999999999999999999999999999999998642 334
Q ss_pred EEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCC-ceeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCcc
Q 002389 729 EVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 729 ~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~ 803 (929)
....|.+.|.+++ |-...+++++-+ ..-+|...+ .........++.+.+|. ||+ ++.|-.+|+|.+-+......
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 5567889898754 556677777643 356787663 33333445668888897 888 66688999999987665444
Q ss_pred ceecccccccccCCCCeEEEEEcCCceE----EEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 804 REIKAPFKSWRLQSKPINSLVVYKDWLY----SASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 804 ~~i~~~~~~~~~~~~~I~sl~~~~d~i~----~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
..+..| .+.+.+|.+++++|.... .++.-.-+.++.+|.+.+..+ ..-..-.-...++.+-++|.|+..|+
T Consensus 167 ~~I~Rp----gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I-gk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 167 VKIERP----GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI-GKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred eEEeCC----CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee-cccccCCCCchhheeccCCcEEEEcc
Confidence 444322 456889999999875321 111111235666666654432 21222223456889999999999999
Q ss_pred CCCcEEEEECCCCcEEEEEeCC-CCeEEEE--EcCCEEEEEECCCcEEEeec
Q 002389 880 SASSLQIWLRGTQQKVGRISAG-SKITSLL--TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs--~dg~~LaSgs~DG~I~IWdi 928 (929)
.|+.+++|.. .|-.+.++-.. ++|++++ |+++..+.|+.||+|-.|++
T Consensus 242 sdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999975 45566666543 5699876 77899999999999988875
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.7e-14 Score=151.79 Aligned_cols=260 Identities=12% Similarity=0.189 Sum_probs=178.3
Q ss_pred CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEccCCeEEEEEEe-ccC-C
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQMVQRKLELIEVI-ATK-E 735 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl~tg~~~~~~~~-~h~-~ 735 (929)
..+|++.++|+|++||..+++ .+..+++|+..+..+.|..+ ...+.||+.||+|++||++.......... ++. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 468999999999999999975 48899999999999999873 44599999999999999998654433333 222 4
Q ss_pred CeEEecc--CCCEEEEEe----cCCeEEEEeCCCcee---eec--cCCCeEEEEEe---CCEEEEEECCCcEEEEEccCC
Q 002389 736 PIRKLDT--YGKTIFAST----QGHRMKVIDSSRTLK---DIY--RSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 736 ~V~s~s~--~g~~L~sgs----~Dg~V~IWDl~~~~~---~l~--~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg 801 (929)
+..+|.. .++.+++|+ .+-.|.+||++...+ .+. ++..|+++.|+ .+.+++|+.||-|.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 6677765 455666664 456899999984333 332 35679999997 345899999999999999864
Q ss_pred ccceecccccccccCCCCeEEEEEcCCc---eEEEEEecCCCeEEEEECCCCCeEEEecCCC------------CCeEEE
Q 002389 802 VEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEGSNIKEWRRHRKPQISIAPEKG------------TTIQAM 866 (929)
Q Consensus 802 ~~~~i~~~~~~~~~~~~~I~sl~~~~d~---i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~------------~~V~sl 866 (929)
...... ..+ -.++..|..+.++.+. +++++ ...+..+|+++.+.....+.... ..+...
T Consensus 199 ~EeDaL--~~v-iN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 199 NEEDAL--LHV-INHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred cchhhH--HHh-hcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 321110 011 1246678888888665 33333 45689999998776544332221 112222
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEC---CC---CcEEEEEeCCCC--eEEEEEc--CCEEEEEECCCcEEEee
Q 002389 867 AVVEDFIYLNYNSS-ASSLQIWLR---GT---QQKVGRISAGSK--ITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 867 afSpdg~~LaSgS~-DG~I~IWdl---~s---g~~i~tl~~h~~--Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
....++.+.+.++. -|...++-+ .+ ++.+..+.+|+. |+++.|+ +.+++|||.||.+.+|.
T Consensus 273 ~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 273 HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 22224555555544 566666533 22 345677777654 8888887 77999999999999997
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.5e-16 Score=177.03 Aligned_cols=190 Identities=18% Similarity=0.286 Sum_probs=151.4
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|+.+|.|+.|+ ..+|++|+.||+|++||+...+. ++++.||...+.++.|+|.+.+.++|+.|+.+++||++..
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~--vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI--VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhh--hhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 4899999999999 44899999999999999998754 7899999999999999999999999999999999999855
Q ss_pred eEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 002389 724 KLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg 801 (929)
.+...+. +|...+. .|+|+|.+++.++.|.++++||. ..|
T Consensus 145 Gc~~~~~-s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~-------------------------------------~ag 186 (825)
T KOG0267|consen 145 GCSHTYK-SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL-------------------------------------TAG 186 (825)
T ss_pred Cceeeec-CCcceeEEEeecCCCceeeccCCcceeeeecc-------------------------------------ccc
Confidence 4443332 2444443 35677777777666666666654 333
Q ss_pred ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 802 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 802 ~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
+.. ..|..|...+.++.+||.......++ .|+++++||+++-..+.........|.+..|+|++..+.+|..+
T Consensus 187 k~~------~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 187 KLS------KEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccc------cccccccccccccccCchhhhhccCC-CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 221 33456778888999999888777766 67899999999988888887778899999999999999988655
Q ss_pred C
Q 002389 882 S 882 (929)
Q Consensus 882 G 882 (929)
.
T Consensus 260 s 260 (825)
T KOG0267|consen 260 S 260 (825)
T ss_pred h
Confidence 3
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=154.65 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=155.1
Q ss_pred eccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCc
Q 002389 687 VKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~--~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
..+|.+.++.+.-++-|+ +.++=+..|.|+|||+...- .+++..+-.+ .-+ ..+.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-------------~~l~~~~~~~-~~s---------~~~P 203 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-------------NALSEPGLEV-KDS---------EFRP 203 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-------------hhhcCccccc-ccc---------ccCc
Confidence 357888888887777654 45666788999999985421 1111000000 000 0011
Q ss_pred eeeeccC-CCeEEEEEe---CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 765 LKDIYRS-KGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 765 ~~~l~~~-~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
+.++..+ ..-..+.|+ .|.+++|..-+.|++|...+|.-..-. +.+.+|...|-.++++|.....++.++-||
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC---ccccccccchhhhccCCccCceEEeeecCc
Confidence 1122221 123456665 677999999999999999997765543 445678999999999987655444444789
Q ss_pred eEEEEECCCC---CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCcEEEEEeCC-CCeEEEEEc---
Q 002389 841 NIKEWRRHRK---PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG---TQQKVGRISAG-SKITSLLTA--- 910 (929)
Q Consensus 841 tI~IWDl~~~---~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~---sg~~i~tl~~h-~~Vtsvs~d--- 910 (929)
+|+|||++.+ ..+. .+.|.+.|+.|.|+.+..+||+|+.||+++|||++ .++++.+++.| ++|+++.|+
T Consensus 281 sIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred eEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 9999999887 3333 37899999999999988899999999999999965 46789999999 669999998
Q ss_pred CCEEEEEECCCcEEEeec
Q 002389 911 NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 911 g~~LaSgs~DG~I~IWdi 928 (929)
...|+++|.|..|.+||+
T Consensus 360 ~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDL 377 (440)
T ss_pred CceEEeccCCCcEEEEEe
Confidence 458999999999999996
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=4.4e-14 Score=149.36 Aligned_cols=284 Identities=12% Similarity=0.146 Sum_probs=191.3
Q ss_pred cccccceecCCCcccceeEEEEEeecCCCCCCEEEEEEe----C-C-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCc
Q 002389 620 LHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY----K-G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA 693 (929)
Q Consensus 620 ~~kv~~~~~~~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs----~-~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~ 693 (929)
..++..|..|.+-.....|... +..|...-..++|+ . + ++|.||.-|.|+|.|+.++++ ...+.+|.+.
T Consensus 63 ~~rvtiy~c~~d~~ir~lq~y~---D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~s 137 (385)
T KOG1034|consen 63 GNRVTIYECPGDGGIRLLQSYA---DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGS 137 (385)
T ss_pred CcEEEEEEECCccceeeeeecc---CCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCcc
Confidence 3455566666544344555544 44689999999997 1 2 899999999999999998865 6788999999
Q ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEEccCCeEEEEEE--eccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-eee
Q 002389 694 VTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEV--IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-LKD 767 (929)
Q Consensus 694 Vtslafspdg~-~LaSgs~DgtIrIWDl~tg~~~~~~~--~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~ 767 (929)
|+.+.|.|+.. ++++||.|.+||+|++++..+.+..- .+|...|.+ |+.+|+++++++.|.++++|+++.. ...
T Consensus 138 INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 99999999875 58999999999999999998776554 388999987 5688999999999999999998721 100
Q ss_pred eccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 768 IYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 768 l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
... .++.|+ ++..- ---.....+.+..+ -..|...|.++.+..+.+ ++-| -++.|..|.
T Consensus 218 ~lE----~s~~~~~~~t~~-pfpt~~~~fp~fst------------~diHrnyVDCvrw~gd~i--lSks-cenaI~~w~ 277 (385)
T KOG1034|consen 218 KLE----LSITYSPNKTTR-PFPTPKTHFPDFST------------TDIHRNYVDCVRWFGDFI--LSKS-CENAIVCWK 277 (385)
T ss_pred hhh----hhcccCCCCccC-cCCccccccccccc------------cccccchHHHHHHHhhhe--eecc-cCceEEEEe
Confidence 000 001111 00000 00000111222211 133556666666665444 3433 356899998
Q ss_pred C-CCCC-------------eEEEecCCCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCC---CCeE
Q 002389 847 R-HRKP-------------QISIAPEKGTTIQAMA--VVEDFIYLNYNSSASSLQIWLRGTQQK--VGRISAG---SKIT 905 (929)
Q Consensus 847 l-~~~~-------------~i~~l~~h~~~V~sla--fSpdg~~LaSgS~DG~I~IWdl~sg~~--i~tl~~h---~~Vt 905 (929)
. +-++ +...+.-....|+-+. |.|-+++||.|...|.|++||++..++ ..++..+ ..|+
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 7 2111 2223333444555554 457789999999999999999988766 2333322 3377
Q ss_pred EEEE--cCCEEEEEECCCcEEEeec
Q 002389 906 SLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 906 svs~--dg~~LaSgs~DG~I~IWdi 928 (929)
..+| ||.+|+..++||+|.-||-
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEe
Confidence 7665 5889999999999999985
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6.6e-13 Score=151.65 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=181.7
Q ss_pred CCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 647 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
+-++.|-+++|. ++.|+|.+.+|.|.-||+.+.+. ...+....++|++++.+|.+..++.|+.||.+...+...+..
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~--~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ--KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCce--eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE
Confidence 457899999999 77999999999999999999864 677778889999999999999999999999888888888876
Q ss_pred EEEEEec-cCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeee---------ccCCC--eEEEEEe-CCEEEEEECC
Q 002389 726 ELIEVIA-TKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDI---------YRSKG--IKSMSVV-QGKIYIGCMD 790 (929)
Q Consensus 726 ~~~~~~~-h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l---------~~~~~--V~sla~s-dg~llsgs~D 790 (929)
....... .++.+.+ |.+++..+++|+.||.|++||...+.... ..... |+++.+- ++.+++|...
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Confidence 5544443 3456665 55677789999999999999987432221 11122 6677665 8999999999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----eEEEecCCCCCeEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----QISIAPEKGTTIQAM 866 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~----~i~~l~~h~~~V~sl 866 (929)
|+|.+||...|+.. +....|...|.+++..++..+..+.+. |+.|..|...++. .......|...|+++
T Consensus 225 G~V~FWd~~~gTLi------qS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLI------QSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred ceEEEEcccCcchh------hhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCCccceeeeccccCCcccceee
Confidence 99999999987654 233567889999999988777776663 4556666554432 233455788999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECC
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
+..++ .+++|+.|+++.+-...
T Consensus 298 av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 298 AVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred eeecc--eEEecceeeEEEEcccc
Confidence 99987 89999999999886543
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.59 E-value=6.2e-12 Score=139.62 Aligned_cols=276 Identities=19% Similarity=0.295 Sum_probs=202.5
Q ss_pred cCCCCCCEEEEEEe-CC-EEEEEEC-CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEc
Q 002389 645 SHKCSGAVTALIYY-KG-LLCSGFS-DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQM 720 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs-~~-~LaSGs~-DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrIWDl 720 (929)
..+|...|.++.|+ ++ .+++++. |+.+++|+..... .+..+.+|...|.+++|+|++. .+++++.|+.|++||.
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 34899999999999 33 7888875 9999999999753 4777888999999999999998 5666699999999998
Q ss_pred cCCeEEEEEEeccCCC-eEEeccCCCEEEEEecCCeEEEEeCCCce---eee-ccCCCeEEEEEe--CCEEEEEECCCcE
Q 002389 721 VQRKLELIEVIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSRTL---KDI-YRSKGIKSMSVV--QGKIYIGCMDSSI 793 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~-V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~---~~l-~~~~~V~sla~s--dg~llsgs~Dg~I 793 (929)
..+........+|... +..+.+++..+++++.|+.+++|+..... ... .+...+.++.+. ...+++++.|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~ 308 (466)
T COG2319 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308 (466)
T ss_pred CCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcE
Confidence 8666544334455555 55788888888899999999999987322 222 224668888886 3447778888889
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
.+||..+........ ...+...+..+.+.++..........|+.+.+|+............+ ..+..+.+++ ..
T Consensus 309 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 382 (466)
T COG2319 309 RLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DG 382 (466)
T ss_pred EEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CC
Confidence 999887755433221 12445567888873231233323235688999998877633333222 2288899988 54
Q ss_pred EEEE-EeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 874 YLNY-NSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 874 ~LaS-gS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.+.+ +..++.+.+|+............+ ..+....+. +..+++++.++.+++|++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 4444 688999999999998888888777 667766554 778888999999999986
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.58 E-value=7.4e-14 Score=153.73 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=183.3
Q ss_pred CEEEEEEe-CCE--EEEEECCCeEEEEECCCCCe--eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 651 AVTALIYY-KGL--LCSGFSDGSIKMWDIKKQSA--MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 651 ~Vtsl~fs-~~~--LaSGs~DGtIrIWD~~~~~~--~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
.|.++.|+ .+. +++.+.|..|++|.-..... ..+....+. .-.|++......++++||..+.|+|||++. +.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA-KL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH-HH
Confidence 38999998 554 44556788999997665422 223333332 334554445558899999999999999984 44
Q ss_pred EEEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCCceee--ecc--CCCeEEEEEe-CC-E-EEEEECCCcEEEE
Q 002389 726 ELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLKD--IYR--SKGIKSMSVV-QG-K-IYIGCMDSSIQEL 796 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~~~~~--l~~--~~~V~sla~s-dg-~-llsgs~Dg~I~iw 796 (929)
......+|...|+++. ....+|++++.+|.|.+..+....+. +.. +..|+-+.|+ .. . +.+++.+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 5556678999998764 66779999999999999998743332 222 3447788887 22 2 6678999999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
|+...... ......|..|...++++|... .+++.+ -|+.|.+||.........+. -..+...++|+++|.+|
T Consensus 193 Dv~g~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 193 DVQGMSPI-----FHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYL 265 (673)
T ss_pred eccCCCcc-----cchhhhccCCcCcceecCCccceEEEec-ccceEEEeecccccccceee-ecCCcceeeecCCceEE
Confidence 99873221 122345788888899998754 444444 67899999998776554443 34578999999999999
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEEeCCCC-eEEEEEcC
Q 002389 876 NYNSSASSLQIWLRGT-QQKVGRISAGSK-ITSLLTAN 911 (929)
Q Consensus 876 aSgS~DG~I~IWdl~s-g~~i~tl~~h~~-Vtsvs~dg 911 (929)
+.|+..|.|..||++. ..++..+..|.. |++++|..
T Consensus 266 ~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999999999999764 567999999944 99999873
No 155
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=5.8e-15 Score=170.42 Aligned_cols=263 Identities=11% Similarity=0.133 Sum_probs=193.3
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.||...|.|+.|. +.++++|+.|..|+||..++..+ .....||.+.|+.++.+.++.+++++|.|..|++|.+.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 3999999999998 66999999999999999888754 7889999999999999999999999999999999999988
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC-Cceee------eccCCCeEEEEEe-CCE-EEEEECCCcEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLKD------IYRSKGIKSMSVV-QGK-IYIGCMDSSIQ 794 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~------l~~~~~V~sla~s-dg~-llsgs~Dg~I~ 794 (929)
..+ ....+|.+.|+++...... +.+.||++++||.+ ..... +...+-+.++.+- .+. +.+|+.|+.-.
T Consensus 265 ~pv-svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 265 APV-SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred chH-HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 643 3345899999987655443 77899999999988 21111 1123335555554 333 88899998877
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-CC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DF 872 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp-dg 872 (929)
.|.+..-.. +...+.-+....+. .+.++ ...+-.+.+|++.++...+.+.+|...+..+.++| |.
T Consensus 342 n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~-ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 342 NHEFEQLAW------------RSNLLIFVTRSSDLSSIVVT-ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cchhhHhhh------------hccceEEEecccccccccee-eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 776543111 11111111111111 11111 11355788999999999999999999999999999 55
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEE--EEEcCCEEEEEECCCcEEEe
Q 002389 873 IYLNYNSSASSLQIWLRGTQQKVGRIS-AGSKITS--LLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~~i~tl~-~h~~Vts--vs~dg~~LaSgs~DG~I~IW 926 (929)
+...+++.||...|||+-.|.+++.+. +|+.+.. ++.+|..++...+-|.++|.
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 566789999999999999988876554 5666444 45557788877777777765
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.7e-14 Score=156.31 Aligned_cols=233 Identities=14% Similarity=0.157 Sum_probs=172.5
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCC-EEEEEecCCeEE---
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGK-TIFASTQGHRMK--- 757 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~-~L~sgs~Dg~V~--- 757 (929)
-..+.||++.|.++...|.|.+|++|+.||+|+||.+.+|+++.... ..+.|.+ |.|.++ -+++++.++.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 45678999999999999999999999999999999999998765444 4455665 444443 222222222233
Q ss_pred ------------------------------EEeCC-------CceeeeccCCCeEEEEEe-CCE-EEEEEC---CCcEEE
Q 002389 758 ------------------------------VIDSS-------RTLKDIYRSKGIKSMSVV-QGK-IYIGCM---DSSIQE 795 (929)
Q Consensus 758 ------------------------------IWDl~-------~~~~~l~~~~~V~sla~s-dg~-llsgs~---Dg~I~i 795 (929)
.|.-. +....+...+.|+.+.|+ .|. +++.+. ...|.+
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 33322 001233445678899998 665 555433 356888
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
.++...... ..+....+.+..+.|||...+++..+ ...|++||+..+.+++.+.....+|..++.+|.|.-|
T Consensus 551 HQLSK~~sQ------~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 551 HQLSKRKSQ------SPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred Eeccccccc------CchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 888764332 12234467889999999877766554 4689999998888888777777899999999999999
Q ss_pred EEEeCCCcEEEEECCCC-cEEEEEeCCCC-eEEEEEcCC--EEEEEECCCcEEEe
Q 002389 876 NYNSSASSLQIWLRGTQ-QKVGRISAGSK-ITSLLTAND--IVLCGTETGLIKGW 926 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg-~~i~tl~~h~~-Vtsvs~dg~--~LaSgs~DG~I~IW 926 (929)
+.|+.|+.+..||+.-. ++.+++..|.. |++|+++++ .+++|+.||++.|+
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999998655 56788888854 999999976 89999999999987
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.57 E-value=1.4e-11 Score=136.87 Aligned_cols=275 Identities=19% Similarity=0.321 Sum_probs=201.7
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCC-CcEEEEEE-cCCCC-EEEEEeC-CCeEEEEE
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSL-FEPGE-SLLSGSA-DKTIGVWQ 719 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslaf-spdg~-~LaSgs~-DgtIrIWD 719 (929)
.+|...|.++.+. +..++.++.|+.+.+|+..... .....+.++. ..+..+.+ ++++. .++..+. |+.+++||
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 3789999999998 4478888899999999999874 2355666644 37887777 88888 5555444 99999999
Q ss_pred ccCCeEEEEEEeccCCCeE--EeccCCCEEEEEec-CCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEE-ECC
Q 002389 720 MVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQ-GHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIG-CMD 790 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~-Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsg-s~D 790 (929)
.............|...+. ++.+++..+++++. |+.+++|+... ....+.. ...+.++++. ++. ++++ +.|
T Consensus 141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 9872224445556777777 56788888888875 99999999984 4444443 5669999997 664 5554 899
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEecCCCCCeEEEEEe
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~-i~~l~~h~~~V~slafS 869 (929)
+.+++||...+..... .+..|.... ...+++++.+.++.+ .|+.+++|+...... .....+|...|.++.|+
T Consensus 221 ~~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 221 GTIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred CcEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 9999998775433321 234444443 226777775555444 788999999876553 44446888999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCC-eEEEEEc--CCEEEEE-ECCCcEEEeec
Q 002389 870 EDFIYLNYNSSASSLQIWLRGTQQKVGRIS--AGSK-ITSLLTA--NDIVLCG-TETGLIKGWIP 928 (929)
Q Consensus 870 pdg~~LaSgS~DG~I~IWdl~sg~~i~tl~--~h~~-Vtsvs~d--g~~LaSg-s~DG~I~IWdi 928 (929)
|++..+++++.|+.+.+|+..+........ .|.. |..+.+. +..++.+ ..|+.+++|+.
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 999999999999999999998888776665 6654 7777773 1455555 68899999975
No 158
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=3.8e-12 Score=142.97 Aligned_cols=266 Identities=11% Similarity=0.147 Sum_probs=169.1
Q ss_pred EEEEECCCeEEEEECCC-CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CCeEEEEEEeccC-CC-
Q 002389 662 LCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMV-QRKLELIEVIATK-EP- 736 (929)
Q Consensus 662 LaSGs~DGtIrIWD~~~-~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl~-tg~~~~~~~~~h~-~~- 736 (929)
+++...|+.|.+||+.+ ++...+..++ +.+....++++|++++|+.++ .++.|.+|++. ++........... .+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34557799999999964 4444556664 345677899999999987654 58899999996 4444322222222 22
Q ss_pred eEEeccCCCEEEEEec-CCeEEEEeCCCc------eeeeccCCCeEEEEEe-CCE-EEE-EECCCcEEEEEccCCcccee
Q 002389 737 IRKLDTYGKTIFASTQ-GHRMKVIDSSRT------LKDIYRSKGIKSMSVV-QGK-IYI-GCMDSSIQELAVSNNVEREI 806 (929)
Q Consensus 737 V~s~s~~g~~L~sgs~-Dg~V~IWDl~~~------~~~l~~~~~V~sla~s-dg~-lls-gs~Dg~I~iwDl~tg~~~~i 806 (929)
-..++++++++++++. ++.|.+|+++.. ...+.......+++++ +|+ +++ ...++.|.+||+.+......
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 2357899999888874 789999998621 1112223345667776 665 544 45679999999976321110
Q ss_pred cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CC--eEEEecCC------CCCeEEEEEecCCCEEE
Q 002389 807 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KP--QISIAPEK------GTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 807 ~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~--~~--~i~~l~~h------~~~V~slafSpdg~~La 876 (929)
......-...+.....+.++|++.++...+..+++|.+|+++. +. .+..+..+ ......+.++|+|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 0000000011344667899999888776665578999999863 33 23332211 12344688999999998
Q ss_pred EEe-CCCcEEEEECCCCc----EEEEEeCCCCeEEEE--EcCCEEEEEEC-CCcEEEeec
Q 002389 877 YNS-SASSLQIWLRGTQQ----KVGRISAGSKITSLL--TANDIVLCGTE-TGLIKGWIP 928 (929)
Q Consensus 877 SgS-~DG~I~IWdl~sg~----~i~tl~~h~~Vtsvs--~dg~~LaSgs~-DG~I~IWdi 928 (929)
++. .++.|.+|++.... .+..+..+...+.+. ++|++|+++.. +++|.+|++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 885 47899999985432 234443332233444 56888887775 899999964
No 159
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.56 E-value=4.7e-14 Score=155.32 Aligned_cols=231 Identities=14% Similarity=0.218 Sum_probs=184.4
Q ss_pred CCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
..-|+++... |+ .|++|+.-.++.|||+.........++..-.-..++++.+||.+..+++..||.|.|||+.+.. .
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence 5567777776 44 7999999999999999987765555555555567889999999999999999999999998865 3
Q ss_pred EEEEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCCc--eeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 002389 727 LIEVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 800 (929)
Q Consensus 727 ~~~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~t 800 (929)
...+.+|.+.+.|+ +.+|..+.+|+-|++|+.||++.. +........|.++.+. .+. ++.|-.++.+.+.....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 44566888888875 678999999999999999999843 3333345678888775 444 88888999888887765
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~ 880 (929)
.+...+ ..|..+|.++.|.+-+.+.++.+ .|+.+..|....|..+...+ ....|.++..|.|.+||+|||.
T Consensus 624 p~kyql-------hlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 624 PEKYQL-------HLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ccceee-------cccccEEEEEEecccCceeeecC-chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCC
Confidence 443322 45789999999999999999887 67789999988887655443 4567999999999999999999
Q ss_pred CCcEEEEEC
Q 002389 881 ASSLQIWLR 889 (929)
Q Consensus 881 DG~I~IWdl 889 (929)
|....||.+
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 998888864
No 160
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=3.3e-13 Score=140.71 Aligned_cols=238 Identities=11% Similarity=0.117 Sum_probs=176.0
Q ss_pred cCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEE
Q 002389 645 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE---SLLSGSADKTIGVW 718 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~---~LaSgs~DgtIrIW 718 (929)
..+|.-.|.++.|. .|.+.+++.|.+++|||..+.+. ...| .-.+.|++-+|+|-.. .+++|..|-.|++.
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~--a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE--AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeeccccee--eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 34899999999997 55999999999999999998754 3333 3467799989998543 47888889999999
Q ss_pred EccCCeEEEEEEeccCCCeEEec--cCCC-EEEEEecCCeEEEEeCCC---ceeeec---------------cCCCeEEE
Q 002389 719 QMVQRKLELIEVIATKEPIRKLD--TYGK-TIFASTQGHRMKVIDSSR---TLKDIY---------------RSKGIKSM 777 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~s--~~g~-~L~sgs~Dg~V~IWDl~~---~~~~l~---------------~~~~V~sl 777 (929)
|+..|.+ .....+|...|.+++ |... .+++|+.||.|++||+++ +...+. +...|..+
T Consensus 174 Di~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 174 DIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred eccCCcc-eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 9999975 345568999998754 5444 578899999999999983 332221 12347889
Q ss_pred EEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE
Q 002389 778 SVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS 854 (929)
Q Consensus 778 a~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~ 854 (929)
+|+ ++. +++.+.|..+++|+...|+....... .+.... ..+-..+. .-+.-. +.+-|.|+.+.+++.-.+..++
T Consensus 253 a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g-~~~~n~~~~~~~~~~-~~~s~v-fv~~p~~~~lall~~~sgs~ir 329 (397)
T KOG4283|consen 253 AWTSDARYLASCGTDDRIRVWNMESGRNTLREFG-PIIHNQTTSFAVHIQ-SMDSDV-FVLFPNDGSLALLNLLEGSFVR 329 (397)
T ss_pred eecccchhhhhccCccceEEeecccCcccccccc-cccccccccceEEEe-ecccce-EEEEecCCeEEEEEccCceEEE
Confidence 997 666 88899999999999998875432211 111100 11111122 111111 2233467899999999999999
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 855 IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 855 ~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.+.+|...|.+.++-|+-+...+|+.|+.|..|-.
T Consensus 330 ~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 330 RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999999999999999999999999975
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.9e-13 Score=143.45 Aligned_cols=281 Identities=12% Similarity=0.145 Sum_probs=188.8
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCC----CeeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQ----SAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~----~~~~i~~l-~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
.+|.+-|+++.|+ +.+|++|+.|..+++|++... .++++... ..|...|.|++|...+.++++|+.+++|..-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 3899999999999 448999999999999998631 12334433 2455899999999999999999999999999
Q ss_pred EccCCeEEEEEEe-ccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCCce------eeeccCCCeEEEEEe--CC-EEEE
Q 002389 719 QMVQRKLELIEVI-ATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRTL------KDIYRSKGIKSMSVV--QG-KIYI 786 (929)
Q Consensus 719 Dl~tg~~~~~~~~-~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~~~------~~l~~~~~V~sla~s--dg-~lls 786 (929)
|+.+.+.+..... ...+.|+.+ +|..+.+++.+.++.|.+||.+... ......+...++.|+ .. .+++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 9998765433322 233467765 5778899999999999999987322 112235567788886 23 3777
Q ss_pred EECCCcEEEEEccCCccceecccc-cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC----
Q 002389 787 GCMDSSIQELAVSNNVEREIKAPF-KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT---- 861 (929)
Q Consensus 787 gs~Dg~I~iwDl~tg~~~~i~~~~-~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~---- 861 (929)
.+..+-+.+||.+.......+... +.+......-....+++++...++.- .+..-.+||+-...+......|..
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEeeeecccceeEeccCCCCcce
Confidence 888888999999764322111100 00011111223455566655544432 233445677665443333333322
Q ss_pred ---CeEEEEEecCCCEEEEEeCCCcEEEEECCC----------C-------------cEEEEEeCCCC-eEEEEEc--CC
Q 002389 862 ---TIQAMAVVEDFIYLNYNSSASSLQIWLRGT----------Q-------------QKVGRISAGSK-ITSLLTA--ND 912 (929)
Q Consensus 862 ---~V~slafSpdg~~LaSgS~DG~I~IWdl~s----------g-------------~~i~tl~~h~~-Vtsvs~d--g~ 912 (929)
.+.+++|..|.. +++|+.+-.|++|.+.. | +.+..+++|.. ++.+.|+ ..
T Consensus 292 N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 466778875554 99999999999997542 1 12456778855 6777777 55
Q ss_pred EEEEEECCCcEEEeec
Q 002389 913 IVLCGTETGLIKGWIP 928 (929)
Q Consensus 913 ~LaSgs~DG~I~IWdi 928 (929)
+|++.|-.+.+++|.+
T Consensus 371 ~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 371 LLVSSGVENSFKLWSD 386 (609)
T ss_pred eEeccchhhheecccc
Confidence 8889999999999975
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=2.1e-13 Score=143.95 Aligned_cols=235 Identities=13% Similarity=0.136 Sum_probs=172.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE------------EEEEEeccCCCeE--E-------eccCCCEEEEEec
Q 002389 694 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKL------------ELIEVIATKEPIR--K-------LDTYGKTIFASTQ 752 (929)
Q Consensus 694 Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~------------~~~~~~~h~~~V~--s-------~s~~g~~L~sgs~ 752 (929)
.....|+|||..|++-+.|..+++|++...-. ...........|. + ..|+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34578999999999999999999999843110 0111111222232 2 2367789999999
Q ss_pred CCeEEEEeCC-Cceeeec----c---CCCeEEEEEe-CCEEEEEECCCcEEEEEc-cCCccceecccccc-cccCCCCeE
Q 002389 753 GHRMKVIDSS-RTLKDIY----R---SKGIKSMSVV-QGKIYIGCMDSSIQELAV-SNNVEREIKAPFKS-WRLQSKPIN 821 (929)
Q Consensus 753 Dg~V~IWDl~-~~~~~l~----~---~~~V~sla~s-dg~llsgs~Dg~I~iwDl-~tg~~~~i~~~~~~-~~~~~~~I~ 821 (929)
+.-|++||.- +..+... + -....+++|+ ||.-+.++....|++||+ +.|....+.+.... -.++...+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999965 3222211 1 1235689997 888777788899999999 55654433221111 234467889
Q ss_pred EEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCcEEEEEe
Q 002389 822 SLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRG-TQQKVGRIS 899 (929)
Q Consensus 822 sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~-sg~~i~tl~ 899 (929)
+++++|......+++.-+.++-||.-..+.+...+.+|.+.|+.+.|.++|..|.+|+ .|-.|..||++ .+.++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999998776666665778899999888888999999999999999999999999998 57899999965 456688888
Q ss_pred CCCC-----e-EEEEEcCCEEEEEECCCcEEEeec
Q 002389 900 AGSK-----I-TSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 900 ~h~~-----V-tsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
.|-. | ..+.+.+++|++|+.||.|++||.
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 7722 2 234455899999999999999984
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=1.1e-12 Score=153.90 Aligned_cols=258 Identities=11% Similarity=0.129 Sum_probs=184.6
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeE-----EEEEEeccCCCeEEec
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL-----ELIEVIATKEPIRKLD 741 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~-----~~~~~~~h~~~V~s~s 741 (929)
++.+.||+++... .+-..+ .-..+|+|++|+|.... ++.|..+|.|.+||++.+.. .+.....|..++..+.
T Consensus 221 ~~~~~vW~~~~p~-~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCCC-CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 3579999999872 334444 34678999999997665 77888999999999987654 2333446778887642
Q ss_pred ----cCCCEEEEEecCCeEEEEeCCCcee---------------eeccCCCeEEEEEe---CCEEEEEECCCcEEEEEcc
Q 002389 742 ----TYGKTIFASTQGHRMKVIDSSRTLK---------------DIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 742 ----~~g~~L~sgs~Dg~V~IWDl~~~~~---------------~l~~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~ 799 (929)
.++..+++++.||.|..|+++.... ......++++++|. ...+++|+.+|.|..-+-.
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 3446799999999999999872111 11223458889996 4459999999998774443
Q ss_pred CCccc--eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCC-CEE
Q 002389 800 NNVER--EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDF-IYL 875 (929)
Q Consensus 800 tg~~~--~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSpdg-~~L 875 (929)
..+.. ....+...+..|..+++++..+|-+......+ .|.+++||... ...++..+..+...|++++|||.. ..+
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeee-ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 32211 22233345567788999999888655443333 37899999976 555666777788889999999965 466
Q ss_pred EEEeCCCcEEEEECCC--CcEEEEEeCCCC-eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 876 NYNSSASSLQIWLRGT--QQKVGRISAGSK-ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 876 aSgS~DG~I~IWdl~s--g~~i~tl~~h~~-Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+++..||.+.+||+.. ..++.+...+.. .+.+.|+ |+.|++|...|++++|+.
T Consensus 458 ~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 7888899999999643 455666666655 3445554 889999999999999975
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5e-14 Score=155.31 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=204.4
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEcc
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG--ESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg--~~LaSgs~DgtIrIWDl~ 721 (929)
.+|.|.|+.|.|+ +..++|||.|..|.+||...++.. ..-..||...|....|-|.. ..+++++.||.+++=.+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 3899999999998 679999999999999999987642 33346899999988898853 459999999999998765
Q ss_pred C-CeEE-EEEEeccCCCeEEe--cc-CCCEEEEEecCCeEEEEeCCCcee-----eecc-CC---CeEEEEEe---CCEE
Q 002389 722 Q-RKLE-LIEVIATKEPIRKL--DT-YGKTIFASTQGHRMKVIDSSRTLK-----DIYR-SK---GIKSMSVV---QGKI 784 (929)
Q Consensus 722 t-g~~~-~~~~~~h~~~V~s~--s~-~g~~L~sgs~Dg~V~IWDl~~~~~-----~l~~-~~---~V~sla~s---dg~l 784 (929)
. +.++ ......|.++|+.+ .| ....+.+++.|+.+.-+|++.... .-.. .+ ....++.. .+.+
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 3 4433 33445788888764 34 345789999999999999873211 1111 22 34566664 3458
Q ss_pred EEEECCCcEEEEEccCCccceec------ccccccccCCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCC--C-----
Q 002389 785 YIGCMDSSIQELAVSNNVEREIK------APFKSWRLQSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHR--K----- 850 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~------~~~~~~~~~~~~I~sl~~~-~d~i~~~s~S~dDgtI~IWDl~~--~----- 850 (929)
++|+.|..+++||.+.-...... .|..........|+++.++ ..+-..++.+ |-.|+++.... |
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn--De~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN--DEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--ccceEEeccccccCCCCCC
Confidence 88999999999998753322111 1112222335567888887 4444556554 56788886432 2
Q ss_pred -----CeEE-EecCCCC--CeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCC--EEEEEE
Q 002389 851 -----PQIS-IAPEKGT--TIQAMAV-VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTAND--IVLCGT 918 (929)
Q Consensus 851 -----~~i~-~l~~h~~--~V~slaf-Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~dg~--~LaSgs 918 (929)
..+. .++||.. .|..+-| .|...|+++||.-|.|.||+..+++.+.-+++.. -|+|+.+++. .|++.|
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 2222 3788865 5667655 6899999999999999999999999999888764 4899998865 899999
Q ss_pred CCCcEEEeecC
Q 002389 919 ETGLIKGWIPL 929 (929)
Q Consensus 919 ~DG~I~IWdil 929 (929)
-|.-|+||.++
T Consensus 456 id~DVKIWTP~ 466 (559)
T KOG1334|consen 456 IDHDVKIWTPL 466 (559)
T ss_pred CccceeeecCC
Confidence 99999999874
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.2e-13 Score=157.84 Aligned_cols=243 Identities=18% Similarity=0.204 Sum_probs=169.7
Q ss_pred CCCCEEEEEEe---C-CEEEEEECCCeEEEEECCC---CCeeEEEEec---cC----CCcEEEEEEcCCCCEEEEEeCCC
Q 002389 648 CSGAVTALIYY---K-GLLCSGFSDGSIKMWDIKK---QSAMLVWDVK---EH----RKAVTSFSLFEPGESLLSGSADK 713 (929)
Q Consensus 648 H~~~Vtsl~fs---~-~~LaSGs~DGtIrIWD~~~---~~~~~i~~l~---gH----~~~Vtslafspdg~~LaSgs~Dg 713 (929)
-...|+.+.+- | .++++|+.||.||||+-.. ++.+.+..+. ++ .+.=.-+.|.....+|+++|.-+
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence 35678899886 2 2899999999999996542 2333343332 11 11113357877777888888799
Q ss_pred eEEEEEccCCeEEEEEEeccCCCeEEec---cCCCEEEEEecCCeEEEEeCCC-----ceeeeccC-C--CeEEEEEe--
Q 002389 714 TIGVWQMVQRKLELIEVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSR-----TLKDIYRS-K--GIKSMSVV-- 780 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h~~~V~s~s---~~g~~L~sgs~Dg~V~IWDl~~-----~~~~l~~~-~--~V~sla~s-- 780 (929)
.|+|||.....+..-...+....+++++ .+|+.+++|..||.|++||.+- .......+ . +|..+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 9999999887665555556667788776 4588999999999999999872 12222222 2 37777775
Q ss_pred -CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE----
Q 002389 781 -QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI---- 855 (929)
Q Consensus 781 -dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~---- 855 (929)
.+++++|+.+|.|++||++......+......|.. +..++++..|+.....++++ .+.|+||+..+..+-..
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs--~q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGS--AQLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecC--cceEEEEecChhhhcccccCc
Confidence 34699999999999999998533222211222221 33589999999988888776 37999999876543211
Q ss_pred --ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 002389 856 --APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 856 --l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~ 893 (929)
+....+.+.+++|+|..-.+|+|+.|.+|.||...+.+
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11123467999999999999999999999999876543
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.8e-13 Score=148.70 Aligned_cols=242 Identities=13% Similarity=0.094 Sum_probs=180.2
Q ss_pred CCCEEEEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 649 SGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 649 ~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.-+|.+.+|. +. .+++++.....+.||+.+.+...+..+.++. ..+.....+|++++|+..|..|.|.+-...+++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 5688899998 33 7999999999999999998866666666665 356778889999999999999999999998887
Q ss_pred EEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCe--EEEEEe-CCE-EEEEECCCcEEEEEc
Q 002389 725 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGI--KSMSVV-QGK-IYIGCMDSSIQELAV 798 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V--~sla~s-dg~-llsgs~Dg~I~iwDl 798 (929)
............-.+|+.+++.+++.+.+|.|.+||++. +...+...+.| ++++.+ +|. +++|+..|.|.|||.
T Consensus 337 li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 337 LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 544333322222235778999999999999999999984 44444444444 455555 555 888999999999998
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEE-EEecCCCeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA-SSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIY 874 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~-s~S~dDgtI~IWDl~~~~~i~~l~~---h~~~V~slafSpdg~~ 874 (929)
.+........|.+....-...|++++|+++...++ +.......+++-.+........++. .-+.|+|++|||.|.|
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce
Confidence 76444334444444444467889999998866543 3333556888888776655554443 2346999999999999
Q ss_pred EEEEeCCCcEEEEECC
Q 002389 875 LNYNSSASSLQIWLRG 890 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~ 890 (929)
+|.|..+|.+.+|.+.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 9999999999999864
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.8e-13 Score=156.38 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=187.7
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccC---CCcEEEEEEcCC--CCEEEEEeCCCeEEEEEcc
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH---RKAVTSFSLFEP--GESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH---~~~Vtslafspd--g~~LaSgs~DgtIrIWDl~ 721 (929)
..+-..+.|+ ...++++...-.|+|||.+.++. ...|..+ ...|+.+.+-.+ ...+++|+.||.||||+--
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3345566676 55788888888999999998754 4555433 356888888653 3459999999999999743
Q ss_pred CC---eEEEEEE-e---------ccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceee--ecc--CCCeEEEEEe--C-
Q 002389 722 QR---KLELIEV-I---------ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD--IYR--SKGIKSMSVV--Q- 781 (929)
Q Consensus 722 tg---~~~~~~~-~---------~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~--l~~--~~~V~sla~s--d- 781 (929)
.. +.+.... . ...+.+..|.....++++++.-..|+|||..+.... +.. ...++++.-. .
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 21 1111110 0 111234456656667777777889999999854432 222 3447777664 4
Q ss_pred CEEEEEECCCcEEEEEccCCccceecccccccccCCCC--eEEEEEcCCceE-EEEEecCCCeEEEEECCCCCeEE--Ee
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP--INSLVVYKDWLY-SASSSVEGSNIKEWRRHRKPQIS--IA 856 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~--I~sl~~~~d~i~-~~s~S~dDgtI~IWDl~~~~~i~--~l 856 (929)
+.+++|..||.+++||.+..... .++..|+.|... |..+.+.+.+.- +++++ .+|.|++||++...... ..
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred ceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecccCccccccee
Confidence 45888999999999999864332 334677777766 888888876554 56665 78999999988743222 22
Q ss_pred cCCC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--------CCeEEEEEcCC--EEEEEECCCcE
Q 002389 857 PEKG---TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------SKITSLLTAND--IVLCGTETGLI 923 (929)
Q Consensus 857 ~~h~---~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--------~~Vtsvs~dg~--~LaSgs~DG~I 923 (929)
..|- +..+++..+++...+|+|+. +.|+||++. |+.+..++.+ +.+.|++|++. ++++|..|.+|
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 2232 25899999999999999998 999999984 4444444422 33788999865 78899999999
Q ss_pred EEeec
Q 002389 924 KGWIP 928 (929)
Q Consensus 924 ~IWdi 928 (929)
.||.+
T Consensus 1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred EEeec
Confidence 99964
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.53 E-value=7.1e-13 Score=145.52 Aligned_cols=240 Identities=11% Similarity=0.181 Sum_probs=175.2
Q ss_pred EEEeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEccCCe---EEEEEEeccCCCeEEe--cc-CCCEEEEEecCCe
Q 002389 684 VWDVKEHRKAVTSFSLFEPGE--SLLSGSADKTIGVWQMVQRK---LELIEVIATKEPIRKL--DT-YGKTIFASTQGHR 755 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~--~LaSgs~DgtIrIWDl~tg~---~~~~~~~~h~~~V~s~--s~-~g~~L~sgs~Dg~ 755 (929)
....+-|.++|++++|+|..+ .+++|+.-|+|-+||+.+.+ ........|..+|.++ +| +...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 445667899999999999776 48899999999999995322 1233455788888874 33 4568999999999
Q ss_pred EEEEeCCCceee-ecc----CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC
Q 002389 756 MKVIDSSRTLKD-IYR----SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD 828 (929)
Q Consensus 756 V~IWDl~~~~~~-l~~----~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d 828 (929)
|+.-|+++.... +.. ...+.++.++ ++.+++|..=|...+||.+++.... ..|..|...|++++++|-
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-----~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-----ENLRLHKKKITSVALNPV 333 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-----hhhhhhhcccceeecCCC
Confidence 999999853322 111 2346677776 4558888888899999999865422 345677889999999998
Q ss_pred ceEEEEEecCCCeEEEEECCC---CC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CCCcEEEEEeC
Q 002389 829 WLYSASSSVEGSNIKEWRRHR---KP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR----GTQQKVGRISA 900 (929)
Q Consensus 829 ~i~~~s~S~dDgtI~IWDl~~---~~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl----~sg~~i~tl~~ 900 (929)
..+.++.+.-|++.+|||++. .. +.-....|...|.+..|||++-.|+|.+.|+.|+|||. ....+..++..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence 776555555889999999754 22 22334578999999999998888999999999999997 44455566653
Q ss_pred CC---C-eEE--EEEc--CCEEEEEECCCcEEEeec
Q 002389 901 GS---K-ITS--LLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 901 h~---~-Vts--vs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.. + ++- ..|+ -.+|++|-.-..|-|+|.
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 21 1 222 3355 458888888777877763
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=9.2e-13 Score=137.44 Aligned_cols=264 Identities=15% Similarity=0.146 Sum_probs=189.8
Q ss_pred CCEEEEEEe-----CCEEEEEEC----CCeEEEEECCCCCeeEEEE-eccCCCcEEEEEEcCCCC-----EEEEEeCCCe
Q 002389 650 GAVTALIYY-----KGLLCSGFS----DGSIKMWDIKKQSAMLVWD-VKEHRKAVTSFSLFEPGE-----SLLSGSADKT 714 (929)
Q Consensus 650 ~~Vtsl~fs-----~~~LaSGs~----DGtIrIWD~~~~~~~~i~~-l~gH~~~Vtslafspdg~-----~LaSgs~Dgt 714 (929)
-++.++.|+ +.+||.|+. .+.|.|-.+.....+.+.. -..|.-+++.+.|.|+.. .|+|++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 367788887 227888884 4667776655433222211 137899999999999874 255543 46
Q ss_pred EEEEEccC--CeEEEE------EEeccCCCeEEecc---CCCEEEEEecCCeEEEEeCCCc------eeeeccCCCeEEE
Q 002389 715 IGVWQMVQ--RKLELI------EVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSSRT------LKDIYRSKGIKSM 777 (929)
Q Consensus 715 IrIWDl~t--g~~~~~------~~~~h~~~V~s~s~---~g~~L~sgs~Dg~V~IWDl~~~------~~~l~~~~~V~sl 777 (929)
+|+|.+.. ++..+. ....+..++++|.+ +.+++.+.+-|.+..|||+... .+-+.+.+.|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999873 332211 12245568888864 5789999999999999999842 3345567889999
Q ss_pred EEe-CCE--EEEEECCCcEEEEEccCCccceecccccccccC--CCCeEEEEEcC-CceEEEEEecCCCeEEEEECCC-C
Q 002389 778 SVV-QGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ--SKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHR-K 850 (929)
Q Consensus 778 a~s-dg~--llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~--~~~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~~-~ 850 (929)
+|. ++. +++.+.||++++||++.-...++. +... ..+...+.+++ +..+++++..+...|.+.|++. .
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTII-----YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTII-----YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC 277 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEE-----ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC
Confidence 998 333 888999999999999875543332 1111 45677777774 4556777777788999999865 4
Q ss_pred CeEEEecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCeEEEEEc---CCEEEEEECC
Q 002389 851 PQISIAPEKGTTIQAMAVVED-FIYLNYNSSASSLQIWLRGTQ------QKVGRISAGSKITSLLTA---NDIVLCGTET 920 (929)
Q Consensus 851 ~~i~~l~~h~~~V~slafSpd-g~~LaSgS~DG~I~IWdl~sg------~~i~tl~~h~~Vtsvs~d---g~~LaSgs~D 920 (929)
..+..+.+|.+.|++++|.|. ...|+|+|.|..+.+||+... .++-.+..++.|+.+.|. ++.|+.+...
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 567889999999999999994 578999999999999997653 234455566779999997 6788877654
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.52 E-value=5e-13 Score=150.35 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=127.7
Q ss_pred cCCeEEEEeCCC-------ceeeeccCCCeEEEEEe--C-CEEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCe
Q 002389 752 QGHRMKVIDSSR-------TLKDIYRSKGIKSMSVV--Q-GKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPI 820 (929)
Q Consensus 752 ~Dg~V~IWDl~~-------~~~~l~~~~~V~sla~s--d-g~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I 820 (929)
..|.|-||++++ .+..+..+..|+.+.|. | .++++++.||.|++|.+..+.. .....|......|...|
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 345566666552 12222334457888885 4 4599999999999999987543 22334557778899999
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EEEEEe
Q 002389 821 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-KVGRIS 899 (929)
Q Consensus 821 ~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~-~i~tl~ 899 (929)
+++.+||-..-.++.+..|.+|++||+.+......+.+|++.|.+++|||||+.+++.+.||+|++|+..+++ +++.-.
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 9999998654433334468899999999999999999999999999999999999999999999999977654 354433
Q ss_pred CC--CC--eEEEEEcCCEEEEEECCC----cEEEee
Q 002389 900 AG--SK--ITSLLTANDIVLCGTETG----LIKGWI 927 (929)
Q Consensus 900 ~h--~~--Vtsvs~dg~~LaSgs~DG----~I~IWd 927 (929)
+. .+ =.-++.+|+++++.|.|. .|.+|+
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 32 11 111455799888887764 355554
No 171
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=2.5e-12 Score=154.45 Aligned_cols=253 Identities=15% Similarity=0.217 Sum_probs=169.0
Q ss_pred cccceeEEEEEeecCCCCCCEEEEEEe-C--CEEEEEECCCeEEEEECCCCC-----eeEEEEeccCCCcEEEEEEcCCC
Q 002389 632 SRISCVHTQILEASHKCSGAVTALIYY-K--GLLCSGFSDGSIKMWDIKKQS-----AMLVWDVKEHRKAVTSFSLFEPG 703 (929)
Q Consensus 632 ~~~~~~~t~~l~~~~gH~~~Vtsl~fs-~--~~LaSGs~DGtIrIWD~~~~~-----~~~i~~l~gH~~~Vtslafspdg 703 (929)
+.|....+.+.+++ .|+..|..++.+ + .+++|||.||+|++||.+.-. .+...++..-...+.++.+.+.|
T Consensus 1032 ~gW~p~G~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCccceEeehhh-hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 34555555554444 799999999998 2 489999999999999987422 12233444456789999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCeEE-----EEE--EeccCCCeEEe---c-cCCC-EEEEEecCCeEEEEeCCCce-----e
Q 002389 704 ESLLSGSADKTIGVWQMVQRKLE-----LIE--VIATKEPIRKL---D-TYGK-TIFASTQGHRMKVIDSSRTL-----K 766 (929)
Q Consensus 704 ~~LaSgs~DgtIrIWDl~tg~~~-----~~~--~~~h~~~V~s~---s-~~g~-~L~sgs~Dg~V~IWDl~~~~-----~ 766 (929)
+.+|.|+.||.|++.+++..... +.. .....+.+.++ . ..+. .++.++..+.|..||++... +
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 99999999999999998762111 111 11222334433 2 2333 77888888999999988322 2
Q ss_pred eeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceeccccccccc-CCCCeEEEEEcCCc---eEEEEEec-CC
Q 002389 767 DIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRL-QSKPINSLVVYKDW---LYSASSSV-EG 839 (929)
Q Consensus 767 ~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~-~~~~I~sl~~~~d~---i~~~s~S~-dD 839 (929)
.-..++.|++++.+ .+. ++.|+..|.+.+||++-+. +...|.. +..++..+..++-. ...++.+. ..
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~------~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV------PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCc------eeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 22236679999998 344 8889999999999998643 3344543 35677777777532 23333332 45
Q ss_pred CeEEEEECCCCCeEEEecCC-------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 840 SNIKEWRRHRKPQISIAPEK-------------------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~l~~h-------------------~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
+.+.+|++.+|...+.+... .-......+...+.++.+|+.|+.|+.||...
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 78999999888655444322 11122233444567889999999999998543
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.51 E-value=4.1e-13 Score=151.08 Aligned_cols=118 Identities=16% Similarity=0.292 Sum_probs=94.1
Q ss_pred ecCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeE----EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 002389 644 ASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAML----VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 716 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~----i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIr 716 (929)
+.++|.+.|+.+.|+ |++|||||.|..|+||.+..+-... -..+.+..-.|.++.|+|...-|+..+..|+++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 445899999999998 7799999999999999998442211 122333345788999999877766666799999
Q ss_pred EEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC
Q 002389 717 VWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
|||+.+++ ......+|.+.|.+ |+.+|..+++.+.|..|+|||.+
T Consensus 154 i~D~stqk-~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 154 ITDISTQK-TAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred EEEcccCc-eeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 99999987 45566678888875 67899999999999999999975
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.50 E-value=9.7e-13 Score=142.03 Aligned_cols=206 Identities=13% Similarity=0.218 Sum_probs=137.6
Q ss_pred cCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCe-----eEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeE
Q 002389 645 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTI 715 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~-----~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtI 715 (929)
-+||+++|..++|+ |+.|||||.|.+|.||++-.+-. .++..+.||...|--++|+|.-.. |+|+|.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 45999999999998 56899999999999999865322 367888999999999999997665 8899999999
Q ss_pred EEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcE
Q 002389 716 GVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSI 793 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I 793 (929)
.+||+.+|.-... ..|...|.+ |+.+|.++++++.|..|+|||.+
T Consensus 157 ~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr------------------------------- 203 (472)
T KOG0303|consen 157 SIWNVGTGEALIT--LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR------------------------------- 203 (472)
T ss_pred EEEeccCCceeee--cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-------------------------------
Confidence 9999999974322 336666664 44566666666666666666654
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec-CCCeEEEEECCCCC---eEEEecCCCCCeEEEEEe
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV-EGSNIKEWRRHRKP---QISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~-dDgtI~IWDl~~~~---~i~~l~~h~~~V~slafS 869 (929)
+++..... .......+...+-.....++...|+. .+..+-+||..+-. ....+. .+..|.--.|.
T Consensus 204 ------~~~~v~e~----~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD 272 (472)
T KOG0303|consen 204 ------RGTVVSEG----VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYD 272 (472)
T ss_pred ------CCcEeeec----ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeec
Confidence 33222110 00001122233332233333334432 45789999965432 233343 33456666778
Q ss_pred cCCCEEE-EEeCCCcEEEEECCCCcE
Q 002389 870 EDFIYLN-YNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 870 pdg~~La-SgS~DG~I~IWdl~sg~~ 894 (929)
||...+. +|-.|+.|+.|.+.+-.+
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCc
Confidence 8888775 455899999999877654
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=7.6e-12 Score=134.68 Aligned_cols=232 Identities=12% Similarity=0.110 Sum_probs=172.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCC--eEEEEeCCC--cee
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH--RMKVIDSSR--TLK 766 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg--~V~IWDl~~--~~~ 766 (929)
...+..+.|+.+...|..|+.||. ++++...-.. +.........|..+-.....++.++.+. .+++++..+ .+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 345677779999988999999996 7888765321 1111122223444455666777666554 588998873 445
Q ss_pred eeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEE
Q 002389 767 DIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEW 845 (929)
Q Consensus 767 ~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S-~dDgtI~IW 845 (929)
.+.....|.++.+...++++.-.+. |++||+++-+..... ..+..+...+..+..+++..+.+--+ .+.|.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI---~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTI---ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhh---hccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 5666788889988877766655554 999999885432211 23334455677777777666654332 245899999
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCCCC---eEEEEEc--CCEEEEEEC
Q 002389 846 RRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAGSK---ITSLLTA--NDIVLCGTE 919 (929)
Q Consensus 846 Dl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~-I~IWdl~sg~~i~tl~~h~~---Vtsvs~d--g~~LaSgs~ 919 (929)
|..+-+.+..+..|.+.+-+++|+++|.+|||+|+.|+ ||||.+.+|+.++.|+.+.. |.+++|+ +++|++.|.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999998887 69999999999999998733 8888886 779999999
Q ss_pred CCcEEEeec
Q 002389 920 TGLIKGWIP 928 (929)
Q Consensus 920 DG~I~IWdi 928 (929)
.++|+||++
T Consensus 239 TeTVHiFKL 247 (391)
T KOG2110|consen 239 TETVHIFKL 247 (391)
T ss_pred CCeEEEEEe
Confidence 999999974
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.49 E-value=2.5e-12 Score=134.04 Aligned_cols=244 Identities=12% Similarity=0.108 Sum_probs=169.9
Q ss_pred CCCCCEEEEEEe---CCEEEEEECC-------CeEEEEECCCCCe-------eEEEEec-cCCCcEEEEEEcCCCCEEEE
Q 002389 647 KCSGAVTALIYY---KGLLCSGFSD-------GSIKMWDIKKQSA-------MLVWDVK-EHRKAVTSFSLFEPGESLLS 708 (929)
Q Consensus 647 gH~~~Vtsl~fs---~~~LaSGs~D-------GtIrIWD~~~~~~-------~~i~~l~-gH~~~Vtslafspdg~~LaS 708 (929)
.|.|.|+.++-+ .+.|+|+..| ..+.||.+..... +.+..+. .|-+.|.|+.|.|++..+++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 678999999988 3367776653 2477999875321 1233333 55678999999999999998
Q ss_pred EeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccC-CCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEE
Q 002389 709 GSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIG 787 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsg 787 (929)
-. |..|.+|++..+..+...... +.+.. ...+.+|.. +. -++|..+..
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~s------s~s~e~~~~ftsg~W-------sp-----------------HHdgnqv~t 189 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLS------SESAEMRHSFTSGAW-------SP-----------------HHDGNQVAT 189 (370)
T ss_pred ec-cCceEEEEcccCcchheeecc------cccccccceeccccc-------CC-----------------CCccceEEE
Confidence 77 889999999876532111110 00000 111111111 00 026667777
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEE
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAM 866 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~sl 866 (929)
..|+++..||+++..... .+-..|+..+..+.++|+..+.+....|||.|++||.+ +..+++.+.+|..+|+++
T Consensus 190 t~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred eCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 788899999998643211 23356788999999999987766666699999999965 566789999999999999
Q ss_pred EEec-CCCEEEEEeCCCcEEEEECCCC-----------------------------cEEEEEeCC-CCeEEEEEc---CC
Q 002389 867 AVVE-DFIYLNYNSSASSLQIWLRGTQ-----------------------------QKVGRISAG-SKITSLLTA---ND 912 (929)
Q Consensus 867 afSp-dg~~LaSgS~DG~I~IWdl~sg-----------------------------~~i~tl~~h-~~Vtsvs~d---g~ 912 (929)
.|+| ..+.|.+||.|..|.+|...+- ..+.++..| ..|.+++|+ +-
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 9998 4567899999999999964321 113355556 349999997 55
Q ss_pred EEEEEECCCcEEEe
Q 002389 913 IVLCGTETGLIKGW 926 (929)
Q Consensus 913 ~LaSgs~DG~I~IW 926 (929)
++++-+.||++.|=
T Consensus 345 iFASLSYDGRviIs 358 (370)
T KOG1007|consen 345 IFASLSYDGRVIIS 358 (370)
T ss_pred eEEEeccCceEEee
Confidence 89999999998773
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6.4e-12 Score=128.30 Aligned_cols=224 Identities=16% Similarity=0.225 Sum_probs=171.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccC---------CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQ---------RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~t---------g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
.|.+-+|+|.+++|+.|..+|+|-+..+.. |+........|+.++..+..+.+.+++++. |.|+-|.++.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 456668999999999999999999998753 333344446899999999888888888775 9999998762
Q ss_pred cee-----eec-----------cCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEE
Q 002389 764 TLK-----DIY-----------RSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 825 (929)
Q Consensus 764 ~~~-----~l~-----------~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~ 825 (929)
... .+. .-..|++|... .+.++.++.|+.++.||+.+|+.. +.+++|...++++..
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~------r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ------REYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE------EEEcCCcceeeeeee
Confidence 111 111 11236666664 666777779999999999998764 456889999999998
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEecC---------C-CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---------K-GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~---------h-~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
....--.++++ +||++++||.++++.++.+.. | +.+|-+++. +..++++|+ ...+.+|++.+.++.
T Consensus 165 R~~~~qilsG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 165 RNANGQILSGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred cccCcceeecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCce
Confidence 65544455555 899999999999987766542 1 235555554 567888886 567999999999999
Q ss_pred EEEeCCCCeEEEEEcCCEEEEEECCCcEEEee
Q 002389 896 GRISAGSKITSLLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 896 ~tl~~h~~Vtsvs~dg~~LaSgs~DG~I~IWd 927 (929)
..+.-..+|..+.|..+.++++|..+.|.-|.
T Consensus 241 ~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 241 CVFPIPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred EEEecccceeEeeeecceEEEeccccceeeee
Confidence 99998888999999999999999887787774
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.1e-11 Score=128.39 Aligned_cols=244 Identities=11% Similarity=0.156 Sum_probs=156.7
Q ss_pred CCcccceeEEEEEeecCCCCCCEEEEEEe----CCEEEEEECCCeEEEEECCC-------CCeeEEEEeccCCCcEEEEE
Q 002389 630 NISRISCVHTQILEASHKCSGAVTALIYY----KGLLCSGFSDGSIKMWDIKK-------QSAMLVWDVKEHRKAVTSFS 698 (929)
Q Consensus 630 ~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs----~~~LaSGs~DGtIrIWD~~~-------~~~~~i~~l~gH~~~Vtsla 698 (929)
...+|.|..... .|.+.|+.|.|. |..+|+++.|+++.||.-.. .+.....++....+.|+++.
T Consensus 45 ~s~~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~ 119 (361)
T KOG2445|consen 45 DSGTWSCTSSWR-----AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVK 119 (361)
T ss_pred CCCceEEeeeEE-----ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEE
Confidence 344677666665 799999999996 56899999999999997621 12235567778889999999
Q ss_pred EcCC--CCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEE
Q 002389 699 LFEP--GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKS 776 (929)
Q Consensus 699 fspd--g~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~s 776 (929)
|.|. |-.+++++.||++|||+.-+.--.......|.-.+. +.|-++ ....-.|
T Consensus 120 FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~-~~pp~~------------------------~~~~~~C 174 (361)
T KOG2445|consen 120 FAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV-IDPPGK------------------------NKQPCFC 174 (361)
T ss_pred ecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc-cCCccc------------------------ccCcceE
Confidence 9995 556999999999999987542111100001100000 001000 0112334
Q ss_pred EEEe----CCE-EEEEECC-----CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc---eEEEEEecCCCeEE
Q 002389 777 MSVV----QGK-IYIGCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEGSNIK 843 (929)
Q Consensus 777 la~s----dg~-llsgs~D-----g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~---i~~~s~S~dDgtI~ 843 (929)
+.|. ... ++.|+.+ +.++||....+..+-.+ .....++..+|+.+.+.|+. ...++....|| |+
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~ 251 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR 251 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeee--ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence 4443 122 4444433 36777776554422111 12334789999999999872 23333333677 99
Q ss_pred EEECCCC--------------------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC---CCCcEEEEEeC
Q 002389 844 EWRRHRK--------------------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR---GTQQKVGRISA 900 (929)
Q Consensus 844 IWDl~~~--------------------~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl---~sg~~i~tl~~ 900 (929)
||++... +.+..+.+|.+.|..+.|+-.|..|++.|.||.|++|.. +..++...++.
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 9997631 134567789999999999999999999999999999973 33455666665
Q ss_pred CCCeEE
Q 002389 901 GSKITS 906 (929)
Q Consensus 901 h~~Vts 906 (929)
...|+.
T Consensus 332 e~~~~~ 337 (361)
T KOG2445|consen 332 EGSVTK 337 (361)
T ss_pred cCCCCC
Confidence 544433
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.45 E-value=1e-12 Score=139.24 Aligned_cols=214 Identities=15% Similarity=0.224 Sum_probs=132.5
Q ss_pred CCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEE-EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 647 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLV-WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i-~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
||.+.|+.+.+. ++++++||.|.+||+||+++..+..+ .-+.||.+.|.++.|+++|.+++|||.|.++++|++..
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 999999999998 45899999999999999999876322 23478999999999999999999999999999999974
Q ss_pred CeE----EEE-----------------------EEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeE
Q 002389 723 RKL----ELI-----------------------EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIK 775 (929)
Q Consensus 723 g~~----~~~-----------------------~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~ 775 (929)
.+. ++. ...-|..+|.|+.+-|+++++-+.++.|..|...+....+...
T Consensus 213 ~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~v---- 288 (385)
T KOG1034|consen 213 KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNV---- 288 (385)
T ss_pred hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhcc----
Confidence 331 110 0001222333333445556666666666666553111000000
Q ss_pred EEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEE--EEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 002389 776 SMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS--LVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 776 sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~s--l~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
.-+++. ...+.-+++ ....+.- +++.+-...++.+ ...|.+.+||++.....
T Consensus 289 --kp~es~------~Ti~~~~~~-----------------~~c~iWfirf~~d~~~~~la~g-nq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 289 --KPPESA------TTILGEFDY-----------------PMCDIWFIRFAFDPWQKMLALG-NQSGKVYVWDLDNNEPP 342 (385)
T ss_pred --CCCccc------eeeeeEecc-----------------CccceEEEEEeecHHHHHHhhc-cCCCcEEEEECCCCCCc
Confidence 000000 000001111 1111111 2222223333333 26688999998765542
Q ss_pred --EEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 854 --SIAPE--KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 854 --~~l~~--h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
.++.. ....|+..+|+.||.+|+...+|++|.-||.-
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 22221 23479999999999999999999999999853
No 179
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=3.3e-11 Score=130.99 Aligned_cols=276 Identities=13% Similarity=0.166 Sum_probs=179.3
Q ss_pred CCCEEEEEEe---CCEEEEEECCCeEEEEECCCCC-------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 649 SGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS-------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 649 ~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~-------~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
..+|.++.|. .+.++||+.|..|+||.+.... ......+..|..+|+++.|+|+|..|+||+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4689999997 2389999999999999886432 23456678999999999999999999999999999999
Q ss_pred Ecc--------C-----C--eEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCC-Cceeeec-c-CCCeEEEE
Q 002389 719 QMV--------Q-----R--KLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS-RTLKDIY-R-SKGIKSMS 778 (929)
Q Consensus 719 Dl~--------t-----g--~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~-~-~~~V~sla 778 (929)
... + . -.......+|...+. +|++++.++++++-|+.+++||+. +...... . ...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 865 2 1 112333446777776 578999999999999999999998 3333332 2 34588888
Q ss_pred Ee-CCE-EEEEECCCcEEEEEccCCcccee----cccccccccC-------------CCCeEEEEEcCCceEEEEEe---
Q 002389 779 VV-QGK-IYIGCMDSSIQELAVSNNVEREI----KAPFKSWRLQ-------------SKPINSLVVYKDWLYSASSS--- 836 (929)
Q Consensus 779 ~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i----~~~~~~~~~~-------------~~~I~sl~~~~d~i~~~s~S--- 836 (929)
|. -++ +++-+.|...+.+.+...+.... ..+....... ....+.+.+.|++...+.-+
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 86 333 66666666555555543221110 0000111111 12233455566665544321
Q ss_pred -cCC----CeEEEEECC-CCCeEEEecCCCCCeEEEEEec------------------CCCEEEEEeCCCcEEEEECCCC
Q 002389 837 -VEG----SNIKEWRRH-RKPQISIAPEKGTTIQAMAVVE------------------DFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 837 -~dD----gtI~IWDl~-~~~~i~~l~~h~~~V~slafSp------------------dg~~LaSgS~DG~I~IWdl~sg 892 (929)
+.+ ++.++|+.. ..++...+.+...++..+.|+| -+-.++.++ .+.|+|||.++-
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc
Confidence 111 234555533 2333444555555556666554 112334444 678999999998
Q ss_pred cEEEEEeC-C-CCeEEEEEc--CCEEEEEECCCcEEE
Q 002389 893 QKVGRISA-G-SKITSLLTA--NDIVLCGTETGLIKG 925 (929)
Q Consensus 893 ~~i~tl~~-h-~~Vtsvs~d--g~~LaSgs~DG~I~I 925 (929)
.++..... | ..|+.++|+ |..++..|.||...+
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 88776653 4 569999997 669999999997543
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=130.43 Aligned_cols=260 Identities=13% Similarity=0.167 Sum_probs=185.7
Q ss_pred EEEEEEe-CC-EEEEEECCCeEEEEECCCCCe------------eEEEEeccCCCcEEEEEEc-------CCCCEEEEEe
Q 002389 652 VTALIYY-KG-LLCSGFSDGSIKMWDIKKQSA------------MLVWDVKEHRKAVTSFSLF-------EPGESLLSGS 710 (929)
Q Consensus 652 Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~------------~~i~~l~gH~~~Vtslafs-------pdg~~LaSgs 710 (929)
.....|+ || -|++-+.|..+++|++...-. .....+ .....|..-+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4467788 44 799999999999999852100 011111 123467777776 6777899999
Q ss_pred CCCeEEEEEccCCeEEEEEE-eccCCCeE-----EeccCCCEEEEEecCCeEEEEeCCCce------eeecc-----CCC
Q 002389 711 ADKTIGVWQMVQRKLELIEV-IATKEPIR-----KLDTYGKTIFASTQGHRMKVIDSSRTL------KDIYR-----SKG 773 (929)
Q Consensus 711 ~DgtIrIWDl~tg~~~~~~~-~~h~~~V~-----s~s~~g~~L~sgs~Dg~V~IWDl~~~~------~~l~~-----~~~ 773 (929)
.|.-|++||.-+|+..+... ..|.+.++ +|+++|.+|++|. .+.|+++|+.+.- .++.+ ..-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999998765432 24544443 5899999998764 6789999996321 12222 223
Q ss_pred eEEEEEe--CC-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-
Q 002389 774 IKSMSVV--QG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR- 849 (929)
Q Consensus 774 V~sla~s--dg-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~- 849 (929)
+.|++++ +. .+++|+....+-+|.-..... ..+..+|+..|+.+.+++++....+++..+-.|-.||++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p------l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP------LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCc------eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 6788886 44 477888888888887665433 2445688999999999999998888777778999999865
Q ss_pred CCeEEEecCCCC-CeEEEEE--ecCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCC-eEEEEEcCC--EEEEEEC
Q 002389 850 KPQISIAPEKGT-TIQAMAV--VEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAGSK-ITSLLTAND--IVLCGTE 919 (929)
Q Consensus 850 ~~~i~~l~~h~~-~V~slaf--Spdg~~LaSgS~DG~I~IWdl~s-g~~i~tl~~h~~-Vtsvs~dg~--~LaSgs~ 919 (929)
+.++..+..|.. .=..|.| .|+|++|++|+.||.|++||+++ |..+..+..++. |+.+++++- ++++++.
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 455666666755 3334555 58999999999999999999988 777777776644 888887755 4554443
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=6.8e-12 Score=136.26 Aligned_cols=241 Identities=12% Similarity=0.212 Sum_probs=160.3
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECC--------C------CCeeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIK--------K------QSAMLVWDVKEHRKAVTSFSLFEPGESLLS 708 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~--------~------~~~~~i~~l~gH~~~Vtslafspdg~~LaS 708 (929)
...|...|+++.|+ ++.||||+.+|.|.+|... + ........+.+|...|..++|+|++.++++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 34899999999999 4499999999999999876 2 223355667899999999999999999999
Q ss_pred EeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCC--Ccee------------------
Q 002389 709 GSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSS--RTLK------------------ 766 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~------------------ 766 (929)
|+.|.++++||+..|.... ...+|...+. ++.|.++++++-+.|...+.++.. +...
T Consensus 141 ~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEe-eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 9999999999999998544 3445666555 677888899998888866666654 1000
Q ss_pred --eeccCCC----eEEEEEe-CCEEE-EEE----CCCcE-----EEEEccCCccceecccccccccCCCCeEEEEEcCC-
Q 002389 767 --DIYRSKG----IKSMSVV-QGKIY-IGC----MDSSI-----QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD- 828 (929)
Q Consensus 767 --~l~~~~~----V~sla~s-dg~ll-sgs----~Dg~I-----~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d- 828 (929)
.+.++.. ...++|+ +|.++ +.+ .++.+ ++|+-.. ...|.........+...+.+.|-
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~-----l~rP~~~lp~~~k~~lavr~~pVy 294 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD-----LKRPAARLPSPKKPALAVRFSPVY 294 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc-----ccCceeecCCCCcceEEEEeeeeE
Confidence 0111111 2234454 66633 311 12222 3332221 11122222233344444433321
Q ss_pred ------------------ceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 829 ------------------WLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 829 ------------------~i~~~s~S~dDgtI~IWDl~~~~~i~-~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.++.++. .+.+.+||.++-.+.. .-.-|-..|+.++|++||.+++..|.||...+-.+
T Consensus 295 ~elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 295 YELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 1222322 3589999988865544 33458889999999999999999999999888776
Q ss_pred CCCcE
Q 002389 890 GTQQK 894 (929)
Q Consensus 890 ~sg~~ 894 (929)
+.++.
T Consensus 372 e~~el 376 (434)
T KOG1009|consen 372 EPWEL 376 (434)
T ss_pred cchhc
Confidence 66544
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3e-12 Score=136.40 Aligned_cols=244 Identities=10% Similarity=0.103 Sum_probs=167.3
Q ss_pred CCCCCCEEEEEEe----CCEEEEEECCCeEEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEEEEEe----CCCeEE
Q 002389 646 HKCSGAVTALIYY----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGS----ADKTIG 716 (929)
Q Consensus 646 ~gH~~~Vtsl~fs----~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~LaSgs----~DgtIr 716 (929)
.+|.+.++.+.|. ++.+.+|+.||+|++||++.........+.+|+ .+-.|++.+..++.+++|. .|-.+.
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~ 146 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV 146 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence 3777788888886 348999999999999999987655666677777 5667777766777777774 377899
Q ss_pred EEEccCCeE-EEEEEeccCCCeEEec--c-CCCEEEEEecCCeEEEEeCCCc------eeeeccCCCeEEEEEe-CC--E
Q 002389 717 VWQMVQRKL-ELIEVIATKEPIRKLD--T-YGKTIFASTQGHRMKVIDSSRT------LKDIYRSKGIKSMSVV-QG--K 783 (929)
Q Consensus 717 IWDl~tg~~-~~~~~~~h~~~V~s~s--~-~g~~L~sgs~Dg~V~IWDl~~~------~~~l~~~~~V~sla~s-dg--~ 783 (929)
+||++..+. .......|...|+++. | +.+.+++|+.||-|.+||+.+. ..++.....|.++.|. ++ +
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr 226 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR 226 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce
Confidence 999998664 4445557888888754 3 4569999999999999999843 3345556779999997 77 6
Q ss_pred EEEEECCCcEEEEEccCCccceecccccccc----cCCCCeEEEEEc-C--CceEEEEEecCCCeEEEEEC---CCC---
Q 002389 784 IYIGCMDSSIQELAVSNNVEREIKAPFKSWR----LQSKPINSLVVY-K--DWLYSASSSVEGSNIKEWRR---HRK--- 850 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~----~~~~~I~sl~~~-~--d~i~~~s~S~dDgtI~IWDl---~~~--- 850 (929)
+++-+..++..+|++..+....-........ .....-+-+..| | .....+++. +-++..++-+ ..+
T Consensus 227 I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~-~~n~~~~~~~~~~~s~~~~ 305 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT-DSNKGTIFPLVDTSSGSLL 305 (376)
T ss_pred EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc-ccCceeEEEeeeccccccc
Confidence 9999999999999998876432111000000 001111222222 2 233333333 1233333332 222
Q ss_pred CeEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 851 PQISIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 851 ~~i~~l~~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
.....+.+ |..-|+++.|...+.++.|||+||.+.+|..+
T Consensus 306 ~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 306 TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 23344544 66788999999999999999999999999853
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.9e-12 Score=145.53 Aligned_cols=238 Identities=11% Similarity=0.151 Sum_probs=167.3
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC------CeE-EEEEEeccCCCeEE--eccCCCEEEEEecCC
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------RKL-ELIEVIATKEPIRK--LDTYGKTIFASTQGH 754 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t------g~~-~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg 754 (929)
..++..|.+.|+.++|.|....|++|+.||++++|++.. +.. ......+|..||.| +..++..+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 346788999999999999999999999999999999932 112 23345589999987 468899999999999
Q ss_pred eEEEEeCCCc------------eeeecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCC
Q 002389 755 RMKVIDSSRT------------LKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 819 (929)
Q Consensus 755 ~V~IWDl~~~------------~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~ 819 (929)
+|+.|++... ...+.+ ...|+.++++ ..++++++.||+++.|+........+..+ .. ...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~----~e-~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEP----KE-HGY 441 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCc----cc-cCC
Confidence 9999976511 111222 3458889997 55699999999999999887554222111 11 222
Q ss_pred eEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecC-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 820 INSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPE-------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 820 I~sl~~~~d~--i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-------h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
..++.+-... ...+++. -+.-.+++.........+.. -...+..+.++|.+.+.+++..|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~--~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFR--FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhcc--cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 2334333222 1111111 12222333333332222221 11357788999999999999999999999999
Q ss_pred CCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 891 TQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 891 sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++..+.....| ..|++++++ |-+|++|+.||.+++|+.
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 99999999988 448887765 679999999999999975
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.3e-10 Score=136.99 Aligned_cols=289 Identities=16% Similarity=0.157 Sum_probs=189.8
Q ss_pred EEEEEeecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCC--CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 002389 638 HTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK 713 (929)
Q Consensus 638 ~t~~l~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~--~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dg 713 (929)
|+...+....|.-.++|.+++ +.++|+|..||.|.+|.--. ........+.-|.+.|++++|+++|.+|+|||..|
T Consensus 194 ~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence 333333445788889999999 45899999999999995443 33234567788999999999999999999999999
Q ss_pred eEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC-----ceeeecc---------CCCeEEE
Q 002389 714 TIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-----TLKDIYR---------SKGIKSM 777 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~-----~~~~l~~---------~~~V~sl 777 (929)
.+.+|.+.+++ ....+...++|.. ++++++.......|+.|.+..... .+..+.. .+-.+.+
T Consensus 274 VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 274 VLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 99999999987 4556667778875 579999999999999999987641 1111111 1113444
Q ss_pred EEe--CCEEEEEECCCcEEEEEccCCccceec-ccccc-ccc---CCCCeEEEEEcCCceEEEEEec-------CC--Ce
Q 002389 778 SVV--QGKIYIGCMDSSIQELAVSNNVEREIK-APFKS-WRL---QSKPINSLVVYKDWLYSASSSV-------EG--SN 841 (929)
Q Consensus 778 a~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~-~~~~~-~~~---~~~~I~sl~~~~d~i~~~s~S~-------dD--gt 841 (929)
.+. -+.++-.+..|.|++||+.+.....-. ..... ..+ ....++.+.....+.++++.-. .| -.
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 554 455777888999999999875432110 00000 000 1123444444444555444321 22 26
Q ss_pred EEEEECCCCCe-----EEEecCCCCCeEEEEEec-CCC-EEEEEeCCCcEEEEECCCCcE--------EEEEeC--C-CC
Q 002389 842 IKEWRRHRKPQ-----ISIAPEKGTTIQAMAVVE-DFI-YLNYNSSASSLQIWLRGTQQK--------VGRISA--G-SK 903 (929)
Q Consensus 842 I~IWDl~~~~~-----i~~l~~h~~~V~slafSp-dg~-~LaSgS~DG~I~IWdl~sg~~--------i~tl~~--h-~~ 903 (929)
+++|-.+.... ......|...+...++.+ ... ..+++|.||.++||-..+.+. .....+ | .+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 78898654432 223346877666666654 333 789999999999997633222 111112 2 45
Q ss_pred eEEEEEcCC-EEEEEECCCcEEEeec
Q 002389 904 ITSLLTAND-IVLCGTETGLIKGWIP 928 (929)
Q Consensus 904 Vtsvs~dg~-~LaSgs~DG~I~IWdi 928 (929)
+++.+|+++ .+++.+.|++|.+||.
T Consensus 512 i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 512 ITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred ccchhhcCCCcEEEEecCCEEEEecC
Confidence 888888732 6677778889999986
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.1e-10 Score=119.55 Aligned_cols=263 Identities=16% Similarity=0.185 Sum_probs=178.3
Q ss_pred EEEEe--CCEEEEEECCCeEEEEECCCCC--------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 654 ALIYY--KGLLCSGFSDGSIKMWDIKKQS--------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 654 sl~fs--~~~LaSGs~DGtIrIWD~~~~~--------~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+-+++ ..+|++|..+|+|.+..++... ..++...++|.++|+.++|. ..+|++|+ ||.|+=|..+..
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 33455 4489999999999999886311 12466678999999999997 46688888 699999976532
Q ss_pred eE-------EEEEEeccC-----CCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe--CCEE
Q 002389 724 KL-------ELIEVIATK-----EPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV--QGKI 784 (929)
Q Consensus 724 ~~-------~~~~~~~h~-----~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s--dg~l 784 (929)
.. .....+.+. ..|.+ +.|..+.+++++.|+.++-||+.. ...++.+ .+.+.++... ++++
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence 11 011111122 12344 457778888888999999999983 3344444 3458888873 8889
Q ss_pred EEEECCCcEEEEEccCCccceecccccc---cc-cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPFKS---WR-LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG 860 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~~~---~~-~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~ 860 (929)
++|+.||++++||.++++......+.+. .. .-+..|.+++.+.++..+. .+..+.+|+++..+....+.- .
T Consensus 172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG----gGp~lslwhLrsse~t~vfpi-p 246 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG----GGPKLSLWHLRSSESTCVFPI-P 246 (325)
T ss_pred eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec----CCCceeEEeccCCCceEEEec-c
Confidence 9999999999999999876554433221 11 1245677888777765433 356899999998887766542 3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc---CCEEEEEECCCcEEEee
Q 002389 861 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA---NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d---g~~LaSgs~DG~I~IWd 927 (929)
.++..+.|. ...+++++..+.|.-|.+. |..-..+... ...++.+|+ -++|-.++...++.|+.
T Consensus 247 a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 247 ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 457777775 4467788888889988763 4443344433 336666665 24666777888887764
No 186
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.9e-11 Score=125.82 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=126.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--Cceeeec
Q 002389 694 VTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIY 769 (929)
Q Consensus 694 Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~ 769 (929)
..|+.|++.|.+|++|..||.|.|||+.|.. ......+|-.||++ |+++|+.+++++.|..|.+||+. ...+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999999999999999999999999865 33445578888885 78999999999999999999987 4566777
Q ss_pred cCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEE
Q 002389 770 RSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEW 845 (929)
Q Consensus 770 ~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IW 845 (929)
...+|+...|+ +++.++.-.+..-.+.++..+....... .. .+. ...-....+++.+.+..++. ..|.+.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~--d~-d~dln~sas~~~fdr~g~yIitGt-sKGkllv~ 180 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK--DD-DGDLNSSASHGVFDRRGKYIITGT-SKGKLLVY 180 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC--CC-ccccccccccccccCCCCEEEEec-CcceEEEE
Confidence 78889999886 3445555555555666665432221110 00 011 11111223556677777665 44678888
Q ss_pred ECCCCCeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 846 RRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 846 Dl~~~~~i~~l~~h~-~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
|..+.+++..++-.. ..|.++.|+..|++++.-+.|..|+.|+.
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 877766555544333 44555555555555555555555555543
No 187
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.5e-12 Score=156.37 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=150.6
Q ss_pred CCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEcc
Q 002389 646 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~ 721 (929)
..|+|.|..+.|+ +++||+|+.||.|.|||+...+......-..-.+.|.+++|+..-.+ |++++.+|.+.|||++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 3799999999998 56999999999999999987542111111234678999999876555 8999999999999998
Q ss_pred CCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-C--CEEEEEECC---CcEEE
Q 002389 722 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-Q--GKIYIGCMD---SSIQE 795 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-d--g~llsgs~D---g~I~i 795 (929)
..+. |..++.++.. ..+..++|+ + .++++++.| -.|.+
T Consensus 193 ~~~p-----------ii~ls~~~~~-------------------------~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 193 KKKP-----------IIKLSDTPGR-------------------------MHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred CCCc-----------ccccccCCCc-------------------------cceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 7643 2222222111 012233443 1 124443332 35788
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC-
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI- 873 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~- 873 (929)
||++.- ..|.+++.+|...|.++.+.+.. .++++++ .|+.|.+|+.++++++..+...+.++..+.|.|...
T Consensus 237 WDlR~a-----ssP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 237 WDLRFA-----SSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS 310 (1049)
T ss_pred eccccc-----CCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcc
Confidence 887652 24557778899999999998765 5555554 789999999999999999999889999999999655
Q ss_pred EEEEEeCCCcEEEEECCCCc
Q 002389 874 YLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~ 893 (929)
.+++++.||.|.||.+..+.
T Consensus 311 ~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhhheeccceeeeeeecCC
Confidence 88889999999999976644
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.38 E-value=8.1e-12 Score=141.45 Aligned_cols=225 Identities=13% Similarity=0.146 Sum_probs=168.6
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
||.+.|+|++|+ +| .++||+.|+.|.+|+.+-.. +..+ .|.+.|.|+.|+|-...|+||+... .-+|......
T Consensus 51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~ 125 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS 125 (1081)
T ss_pred cccceEEEEEEccCCceeccCCCceeEEEecccccc---eeee-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh
Confidence 999999999999 55 89999999999999887532 2333 7999999999999999999998654 5689876543
Q ss_pred EEEEEEeccCCCe----EEeccCCCEEEEEecCCeEEEEeCCCceeee--c---cCCCeEEEEEe----C---CEEEEEE
Q 002389 725 LELIEVIATKEPI----RKLDTYGKTIFASTQGHRMKVIDSSRTLKDI--Y---RSKGIKSMSVV----Q---GKIYIGC 788 (929)
Q Consensus 725 ~~~~~~~~h~~~V----~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l--~---~~~~V~sla~s----d---g~llsgs 788 (929)
. ..++..+ .+|..+|.+++.|-.+|+|.+-+-.+..+.. . .+.+|++++|. . +.+.+..
T Consensus 126 V-----~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 126 V-----SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred H-----HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 2 1233322 2578899999999999999999876433322 1 25679999994 2 2366778
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf 868 (929)
...++.++.+.......- + .-+-...+++..+++.+++.++ .|+.+++|..++ ....+......+|+.++.
T Consensus 201 W~qTLSFy~LsG~~Igk~----r---~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~G-vrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 201 WGQTLSFYQLSGKQIGKD----R---ALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDG-VRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred ccceeEEEEecceeeccc----c---cCCCCchhheeccCCcEEEEcc-CCCceEEEeecC-eEEeeccccceeEEEEEE
Confidence 888888888875221111 1 1134456788889998877666 467889987654 445566667789999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECC
Q 002389 869 VEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~ 890 (929)
.|++++++.|+.||+|-.|++-
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhH
Confidence 9999999999999999999753
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.36 E-value=4.7e-10 Score=126.03 Aligned_cols=258 Identities=13% Similarity=0.112 Sum_probs=157.6
Q ss_pred CCCEEEEEEe-C-CEEEEE-ECCCeEEEEECCC-CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccC-
Q 002389 649 SGAVTALIYY-K-GLLCSG-FSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQ- 722 (929)
Q Consensus 649 ~~~Vtsl~fs-~-~~LaSG-s~DGtIrIWD~~~-~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-DgtIrIWDl~t- 722 (929)
.+....++++ + .+|+++ ..++.|.+|++.. ++...+.... ..+....++|+|+|+++++++. ++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 3456678888 3 366554 4689999999973 3333333332 3345678999999999887764 88999999964
Q ss_pred CeEE-EEEEe-ccCCCe-EEeccCCCEEEEEe-cCCeEEEEeCCCc--ee-------eeccCCCeEEEEEe-CCE-EEEE
Q 002389 723 RKLE-LIEVI-ATKEPI-RKLDTYGKTIFAST-QGHRMKVIDSSRT--LK-------DIYRSKGIKSMSVV-QGK-IYIG 787 (929)
Q Consensus 723 g~~~-~~~~~-~h~~~V-~s~s~~g~~L~sgs-~Dg~V~IWDl~~~--~~-------~l~~~~~V~sla~s-dg~-llsg 787 (929)
+... ..... +...+- ..++++++++++++ .++.|.+||++.. +. ....+.....+.|+ +|+ ++++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 3211 11111 111222 24789999887665 5589999998741 11 11234456788887 666 6566
Q ss_pred EC-CCcEEEEEccC--Cccceeccccccccc---CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC--
Q 002389 788 CM-DSSIQELAVSN--NVEREIKAPFKSWRL---QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-- 859 (929)
Q Consensus 788 s~-Dg~I~iwDl~t--g~~~~i~~~~~~~~~---~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h-- 859 (929)
.. ++.|.+|++.. +....+... ..... +......+.++|++.++......++.|.+|+++.......+.++
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTL-DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEE-ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 54 89999999974 222222110 00000 11122357889998877766545789999998543211111122
Q ss_pred -CCCeEEEEEecCCCEEEEEeC-CCcEEEEECC--CCcE--EEEEeCCCCeEEEE
Q 002389 860 -GTTIQAMAVVEDFIYLNYNSS-ASSLQIWLRG--TQQK--VGRISAGSKITSLL 908 (929)
Q Consensus 860 -~~~V~slafSpdg~~LaSgS~-DG~I~IWdl~--sg~~--i~tl~~h~~Vtsvs 908 (929)
......+.++|||++|++++. +++|.+|+++ ++.. +.++.......++.
T Consensus 272 ~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~ 326 (330)
T PRK11028 272 TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVS 326 (330)
T ss_pred ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEE
Confidence 124567899999999988774 8999999864 4433 44444433344444
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.34 E-value=3.7e-11 Score=129.99 Aligned_cols=204 Identities=14% Similarity=0.162 Sum_probs=150.3
Q ss_pred EeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCc
Q 002389 686 DVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 686 ~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
.+.||+++|..++|+|-+.. |+|||.|.+|.||++-.+.+ ...+..++..+..|.+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l----~~~ltepvv~L~gH~rr------------------ 133 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL----TRDLTEPVVELYGHQRR------------------ 133 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccc----ccCcccceEEEeeccee------------------
Confidence 45799999999999996655 99999999999999976542 22334555555544433
Q ss_pred eeeeccCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCe
Q 002389 765 LKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSN 841 (929)
Q Consensus 765 ~~~l~~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgt 841 (929)
|-.++|+ .+.+++++.|..|.+||+.+|+.... ..|...|.++.++.++...++.+ .|+.
T Consensus 134 ---------Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~-------l~hpd~i~S~sfn~dGs~l~Ttc-kDKk 196 (472)
T KOG0303|consen 134 ---------VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT-------LDHPDMVYSMSFNRDGSLLCTTC-KDKK 196 (472)
T ss_pred ---------EEEEeecccchhhHhhccCCceEEEEeccCCceeee-------cCCCCeEEEEEeccCCceeeeec-ccce
Confidence 4455565 45588899999999999999875433 22788999999999998888776 8899
Q ss_pred EEEEECCCCCeEEEecCCCC-CeEEEEEecCCCEEEEEe---CCCcEEEEECCCCcE---EEEEeCCCCeEEEEEc--CC
Q 002389 842 IKEWRRHRKPQISIAPEKGT-TIQAMAVVEDFIYLNYNS---SASSLQIWLRGTQQK---VGRISAGSKITSLLTA--ND 912 (929)
Q Consensus 842 I~IWDl~~~~~i~~l~~h~~-~V~slafSpdg~~LaSgS---~DG~I~IWdl~sg~~---i~tl~~h~~Vtsvs~d--g~ 912 (929)
|++||.++++++..-.+|.+ .-....|-.+|.++.||- ++..+-+||..+.+. ..++...+.|.-=-+| .+
T Consensus 197 vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 197 VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred eEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC
Confidence 99999999999988888866 445667778888555543 568899999665443 5566666555443344 33
Q ss_pred EE-EEEECCCcEEEeec
Q 002389 913 IV-LCGTETGLIKGWIP 928 (929)
Q Consensus 913 ~L-aSgs~DG~I~IWdi 928 (929)
++ ++|=.|+.|+-|.+
T Consensus 277 ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEI 293 (472)
T ss_pred EEEEEecCCcceEEEEe
Confidence 44 46778999998864
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.34 E-value=8.2e-11 Score=138.21 Aligned_cols=239 Identities=14% Similarity=0.124 Sum_probs=164.7
Q ss_pred CCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEE----EEeccCCCcEEEEEEcCCCCE--EEEEeCCCeEEEE
Q 002389 648 CSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLV----WDVKEHRKAVTSFSLFEPGES--LLSGSADKTIGVW 718 (929)
Q Consensus 648 H~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i----~~l~gH~~~Vtslafspdg~~--LaSgs~DgtIrIW 718 (929)
-..+|+|+.|+ +++++.|+.+|.|.+||++.+...+. .....|..+|+.+.|..+-.. ++|++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 36789999998 66999999999999999997754211 222478999999999865444 9999999999999
Q ss_pred EccCCeEEE----EEEec-------cCCCeEE--e-ccCCCEEEEEecCCeEEEEeCC---Cce--------eeeccCCC
Q 002389 719 QMVQRKLEL----IEVIA-------TKEPIRK--L-DTYGKTIFASTQGHRMKVIDSS---RTL--------KDIYRSKG 773 (929)
Q Consensus 719 Dl~tg~~~~----~~~~~-------h~~~V~s--~-s~~g~~L~sgs~Dg~V~IWDl~---~~~--------~~l~~~~~ 773 (929)
+++.-.... ..... ....+++ | ..+...+++|+.+|.|.--+.. ... ....+...
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 886522110 00001 1112333 3 2466789999999988773322 111 11223566
Q ss_pred eEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-
Q 002389 774 IKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK- 850 (929)
Q Consensus 774 V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~- 850 (929)
|.++.++ ..+++..+.|-++++|.-... ..|.-.+..+...++.++++|...........+|.+.+||+...
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~-----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCC-----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 8888886 333443334999999987631 12333445556678999999886655555547899999997543
Q ss_pred -CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 851 -PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 851 -~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
.++....-+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 33444444566778888999999999999999999999853
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=8.5e-11 Score=137.06 Aligned_cols=210 Identities=9% Similarity=-0.016 Sum_probs=134.7
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEeccCCCeEEeccCC
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 744 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g 744 (929)
+..|.+||..... .+.+..|...+.+..|+|||+.|+.++.+ ..|++||+.+++............-..|+|+|
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 5789999998764 34566788899999999999999887654 47999999887643332221111224678888
Q ss_pred CEEEEEe-cCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEE
Q 002389 745 KTIFAST-QGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 823 (929)
Q Consensus 745 ~~L~sgs-~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl 823 (929)
+.++.++ .+|.+.+| +||+.++....+ ..+...+...
T Consensus 260 ~~La~~~~~~g~~~Iy-----------------------------------~~d~~~~~~~~l-------t~~~~~~~~~ 297 (429)
T PRK01742 260 SRLAFASSKDGVLNIY-----------------------------------VMGANGGTPSQL-------TSGAGNNTEP 297 (429)
T ss_pred CEEEEEEecCCcEEEE-----------------------------------EEECCCCCeEee-------ccCCCCcCCE
Confidence 8777654 45543333 223322221111 1223345667
Q ss_pred EEcCCceEEEEEecCCCeEEEEECC--CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 824 VVYKDWLYSASSSVEGSNIKEWRRH--RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDgtI~IWDl~--~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
.++|++..++..+..++...+|+++ ++.. ..+ ++.. ....|+|||++|+.++.++ +.+||+.+++........
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~ 372 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF 372 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC
Confidence 8888887665555456677777753 3332 223 3433 4578999999998887765 566999888764322222
Q ss_pred CCeE--EEEEcCCEEEEEECCCcEEEeec
Q 002389 902 SKIT--SLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 ~~Vt--svs~dg~~LaSgs~DG~I~IWdi 928 (929)
... +++++|++|++++.+|.+.+|.+
T Consensus 373 -~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 373 -LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 222 35677999999999999988864
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.31 E-value=3e-10 Score=137.05 Aligned_cols=247 Identities=16% Similarity=0.178 Sum_probs=168.4
Q ss_pred EECCCCCeeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccC-----CeEEEEEEec-cCCCeE--EeccCC
Q 002389 674 WDIKKQSAMLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQ-----RKLELIEVIA-TKEPIR--KLDTYG 744 (929)
Q Consensus 674 WD~~~~~~~~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~t-----g~~~~~~~~~-h~~~V~--s~s~~g 744 (929)
|+.++ ..+..+..|...|..++.++.. .+++|||.||+||+||.+. +......... ....+. .+.+.+
T Consensus 1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 66654 4588899999999999988665 8999999999999999864 1111222221 333444 456788
Q ss_pred CEEEEEecCCeEEEEeCCCc--e-----ee----eccCCCeEEE-EEe---CC-EEEEEECCCcEEEEEccCCccceecc
Q 002389 745 KTIFASTQGHRMKVIDSSRT--L-----KD----IYRSKGIKSM-SVV---QG-KIYIGCMDSSIQELAVSNNVEREIKA 808 (929)
Q Consensus 745 ~~L~sgs~Dg~V~IWDl~~~--~-----~~----l~~~~~V~sl-a~s---dg-~llsgs~Dg~I~iwDl~tg~~~~i~~ 808 (929)
+.+++++.||.|.+.+++.. . .. ....+.+.++ ++. .. .++.+..-+.|..||.......-..
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l- 1189 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL- 1189 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-
Confidence 99999999999999998741 1 00 0112223333 333 23 3666788899999999874432111
Q ss_pred cccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-cCCCCCeEEEEEecC---CCEEEEEe--CCC
Q 002389 809 PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVED---FIYLNYNS--SAS 882 (929)
Q Consensus 809 ~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l-~~h~~~V~slafSpd---g~~LaSgS--~DG 882 (929)
......+.|++++..|.+.+.+.+. ..|.+.+||++-+..+... .++..+|+.+..+|- ....++++ ..+
T Consensus 1190 ---k~~~~hG~vTSi~idp~~~WlviGt-s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1190 ---KNQLRHGLVTSIVIDPWCNWLVIGT-SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred ---hcCccccceeEEEecCCceEEEEec-CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 1123367899999999998888776 5688999999988766544 345578888888763 34555544 578
Q ss_pred cEEEEECCCCcEEEEEeCCC----------------C-----eEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 883 SLQIWLRGTQQKVGRISAGS----------------K-----ITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 883 ~I~IWdl~sg~~i~tl~~h~----------------~-----Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
.|.+|++.+|.+-.++.... + +.+.-.+ +..+.+|+.|+.|+.||+
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 89999999998766665431 1 1111122 458899999999999996
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.31 E-value=6.6e-11 Score=125.39 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=154.8
Q ss_pred CCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCC-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCCe
Q 002389 649 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM-VQRK 724 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~-~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl-~tg~ 724 (929)
-.+|+|.+|+ +. .+|.+-....|.||...... .++.++++.|...|++++|+|..++|++|+.|+.-+||.. ..++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4799999999 44 79999999999999998887 6789999999999999999999999999999999999998 4554
Q ss_pred EEEEEE-eccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceee-----ec--cCCCeEEEEEe-CCE-EEEEECCCc
Q 002389 725 LELIEV-IATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKD-----IY--RSKGIKSMSVV-QGK-IYIGCMDSS 792 (929)
Q Consensus 725 ~~~~~~-~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~-----l~--~~~~V~sla~s-dg~-llsgs~Dg~ 792 (929)
...... ..+....+ .++|.++.+++|+....|.+|-..+...- +. ....|.+++|+ ++- +++|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 433222 23444444 46889999999999999999887743222 11 13457888887 444 556888888
Q ss_pred EEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 872 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg 872 (929)
.++|...-. .+.--|. .+|-|.. +.-|.++..+....++|..+.|+|+|
T Consensus 170 ~rVfSayIK--------------------~Vdekpa------p~pWgsk-----~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 170 CRVFSAYIK--------------------GVDEKPA------PTPWGSK-----MPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred eeEEEEeee--------------------ccccCCC------CCCCccC-----CcHHHHHHhhccCCCceeeeEeCCCC
Confidence 888865321 1111110 0000110 11233444444567789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc
Q 002389 873 IYLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~ 893 (929)
..|+-.+.|+++.+-|.....
T Consensus 219 ~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CEeeEecCCCceEEeecCCCc
Confidence 999999999999999866553
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4e-11 Score=131.31 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=132.0
Q ss_pred EEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 002389 653 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 653 tsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
.+++|+ +..+++|+.||++|||+..... .+.....|.+.|.++.|+|||+.|++-+.| ..+||++++|.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 678887 4599999999999999976654 256678899999999999999999999999 89999999984322222
Q ss_pred eccCCCeE---EeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceec
Q 002389 731 IATKEPIR---KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIK 807 (929)
Q Consensus 731 ~~h~~~V~---s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~ 807 (929)
+..+.... .|..++. . .++++.... ...+.|..||+..-....+.
T Consensus 225 ~~~k~~~~~~cRF~~d~~------~-~~l~laa~~-------------------------~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNA------Q-ETLRLAASQ-------------------------FPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred CcccchhhhhceecccCC------C-ceEEEEEec-------------------------CCCCceeEEEeeeecccccc
Confidence 11111111 1222210 0 011111110 01122222222211000000
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 002389 808 APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI 886 (929)
Q Consensus 808 ~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~-~l~~h~~~V~slafSpdg~~LaSgS~DG~I~I 886 (929)
. .+......+.|.+++.++++.+.+-++ .+|.|-+++...-+.++ ....|...|+.+.|+||.+++++.+.|..+.|
T Consensus 273 ~-~~~~~~~~~siSsl~VS~dGkf~AlGT-~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 273 R-LRKKIKRFKSISSLAVSDDGKFLALGT-MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred c-hhhhhhccCcceeEEEcCCCcEEEEec-cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 0 001111246899999999999988776 58899999987766554 44579999999999999999999999999888
Q ss_pred EEC
Q 002389 887 WLR 889 (929)
Q Consensus 887 Wdl 889 (929)
..+
T Consensus 351 ~~l 353 (398)
T KOG0771|consen 351 TKL 353 (398)
T ss_pred EEE
Confidence 764
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=1.3e-11 Score=135.82 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=175.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCCC-ceeeecc
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR-TLKDIYR 770 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~ 770 (929)
+-..+.++.+|.+++-|+..|.+-.+|..++++.+... ....|..+. .|...++++.+.+.++|||-.+ .+..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence 45678899999999999999999999999988755433 333444433 3555677778889999999874 5666777
Q ss_pred CCCeEEEEEeCCE--EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 771 SKGIKSMSVVQGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 771 ~~~V~sla~sdg~--llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
...|..+.|-.-. +++++..|.++.-|+++|+.... +......+..+..+|-....-.+. .+|+|.+|..+
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~ 281 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPN 281 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHH------HHccCCccchhhcCCccceEEEcC-CCceEEecCCC
Confidence 8888889886333 66788899999999999876432 123345666666666444333333 57899999999
Q ss_pred CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCcEEEee
Q 002389 849 RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 849 ~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~~LaSgs~DG~I~IWd 927 (929)
..+++..+-.|.++|.++++.++|+|++|.|.|..++|||+.+...+.++....+...++++.+-+++.|....|.||.
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeeh
Confidence 9888888888999999999999999999999999999999998888777776556778888877666666767799995
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.8e-10 Score=124.08 Aligned_cols=240 Identities=11% Similarity=0.014 Sum_probs=166.5
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC------CeEEEEEEeccCCCeEEec--cCCCEEEEEecCCeE
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ------RKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRM 756 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t------g~~~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V 756 (929)
..+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+.+...-..|...|.++. .....+++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45679999999999999999999999999999999853 2333334445667787754 556789999999999
Q ss_pred EEEeCCC--ceeeeccC---CCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc
Q 002389 757 KVIDSSR--TLKDIYRS---KGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW 829 (929)
Q Consensus 757 ~IWDl~~--~~~~l~~~---~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~ 829 (929)
...|+.. .+..+.+. ..|..+..+ ++.+++.+.++.|.+||.+......- + ......+...+++.+||..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--~-~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--L-VLPANSGKNFYTAEFHPET 206 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--e-eeecCCCccceeeeecCCC
Confidence 9999983 33334443 358888876 78899999999999999987442110 0 0111235667788888876
Q ss_pred eEEEEEecCCCeEEEEECCCCCe-EE---EecCC---CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCC
Q 002389 830 LYSASSSVEGSNIKEWRRHRKPQ-IS---IAPEK---GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAG 901 (929)
Q Consensus 830 i~~~s~S~dDgtI~IWDl~~~~~-i~---~l~~h---~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~-i~tl~~h 901 (929)
..++......+-+-+||.+.... +. .+.+- ...-.++.|+|+|..+.+--....-.+||+-+..+ +..+. |
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~ 285 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-H 285 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-C
Confidence 55444444556689999765431 11 11111 12235678999999988876666666788777555 34443 2
Q ss_pred CC--------eEEEEEcC-CEEEEEECCCcEEEeec
Q 002389 902 SK--------ITSLLTAN-DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 ~~--------Vtsvs~dg-~~LaSgs~DG~I~IWdi 928 (929)
++ +.+++|-+ ..+++|+++=.|++|.+
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCcceeeeeeeeeeeecceeeeccCcccceEEEec
Confidence 11 56677764 47899999999999985
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=3.2e-10 Score=126.85 Aligned_cols=216 Identities=11% Similarity=0.147 Sum_probs=153.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE----EEEeccCCCe-EEe-----ccCCCEEEEEecCCeEEEEeCC
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL----IEVIATKEPI-RKL-----DTYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~----~~~~~h~~~V-~s~-----s~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
.++...++-.|++|+-.- ...+.+|+.+.+...+ ........+. +.| .+.+--++.+-.-|.+.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 345555555666765443 3457888877432211 1111122222 223 2455577888888888888865
Q ss_pred C-ceee------eccCCCeEEEEEe---CCEEEEEECCCcEEEEEccCC----------------------ccceecccc
Q 002389 763 R-TLKD------IYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNN----------------------VEREIKAPF 810 (929)
Q Consensus 763 ~-~~~~------l~~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg----------------------~~~~i~~~~ 810 (929)
. .... ......|+|+.|- ++.+++.-.+|.+++||.... ..+....|.
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 3 1111 1123569999995 556888889999999976210 111222455
Q ss_pred cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 811 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 811 ~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
..|......|+.+.+++|+.++++.+ .||.++|||..+.+++..++.--+...|++|||||+||++|++|--|.||.+.
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEe-cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 55666667899999999999999988 88999999999988777666666789999999999999999999999999999
Q ss_pred CCcEEEEEeCC-CCeEEEEEc
Q 002389 891 TQQKVGRISAG-SKITSLLTA 910 (929)
Q Consensus 891 sg~~i~tl~~h-~~Vtsvs~d 910 (929)
..+.+..=++| ++|+.|+||
T Consensus 363 erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cceEEEeccccccceeeEeec
Confidence 99999999999 569999888
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.25 E-value=2.5e-10 Score=119.36 Aligned_cols=215 Identities=10% Similarity=0.083 Sum_probs=141.9
Q ss_pred CCeEEEEEccCCe--EEEEEEeccCCCeEEec--cCCC-EEEEEec---C----CeEEEEeCCCceee-----------e
Q 002389 712 DKTIGVWQMVQRK--LELIEVIATKEPIRKLD--TYGK-TIFASTQ---G----HRMKVIDSSRTLKD-----------I 768 (929)
Q Consensus 712 DgtIrIWDl~tg~--~~~~~~~~h~~~V~s~s--~~g~-~L~sgs~---D----g~V~IWDl~~~~~~-----------l 768 (929)
|+.|.+-+++.+. +.+.....+.+.|..+. |... .++++.. | ....||.+...... +
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 6777777665532 33333445556677654 3333 4444432 1 25679998743332 1
Q ss_pred c--cCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC--CceEEEEEecCCCeEE
Q 002389 769 Y--RSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK--DWLYSASSSVEGSNIK 843 (929)
Q Consensus 769 ~--~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~--d~i~~~s~S~dDgtI~ 843 (929)
. ....+.|+.|. ++.-+++-.|..|.+|++..+.......+...-..+....++-.++| ++...++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt--~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT--SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe--CCCcEE
Confidence 1 13478999996 55434444599999999988665322111111112233344444444 44455544 478999
Q ss_pred EEECCCCCeE-EEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECC-CCcEEEEEeCC-CCeEEEEEc---CCEEEE
Q 002389 844 EWRRHRKPQI-SIAPEKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRG-TQQKVGRISAG-SKITSLLTA---NDIVLC 916 (929)
Q Consensus 844 IWDl~~~~~i-~~l~~h~~~V~slafSpdg~-~LaSgS~DG~I~IWdl~-sg~~i~tl~~h-~~Vtsvs~d---g~~LaS 916 (929)
.||.++.... ..-..|...|+.+.|+|+.+ +|++|+.||.|+|||.+ +..++.++.+| +.|+++.|+ .+.|.+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 9999876543 34457999999999999876 57899999999999965 56679999999 569999987 568999
Q ss_pred EECCCcEEEeec
Q 002389 917 GTETGLIKGWIP 928 (929)
Q Consensus 917 gs~DG~I~IWdi 928 (929)
||.|..|.+|..
T Consensus 277 ~~SDs~V~Lsca 288 (370)
T KOG1007|consen 277 GGSDSAVNLSCA 288 (370)
T ss_pred cCCCceeEEEec
Confidence 999999999864
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=9.6e-11 Score=130.88 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=145.5
Q ss_pred CCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEe-ccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEc
Q 002389 646 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQM 720 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l-~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl 720 (929)
.||+|-|+|+.|+ + .+|++||.|-.+.|||....+. ++.+ .||...|.++.|-|. +..++||+.|+.|+++|+
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 4999999999999 4 4999999999999999986643 4444 699999999999984 445899999999999999
Q ss_pred cCCeE---------EEEEEeccCCCeEEe--ccCC-CEEEEEecCCeEEEEeCCCceeeecc-------------CCCeE
Q 002389 721 VQRKL---------ELIEVIATKEPIRKL--DTYG-KTIFASTQGHRMKVIDSSRTLKDIYR-------------SKGIK 775 (929)
Q Consensus 721 ~tg~~---------~~~~~~~h~~~V~s~--s~~g-~~L~sgs~Dg~V~IWDl~~~~~~l~~-------------~~~V~ 775 (929)
...+. .......|...|..+ .+++ +.+.+++.||+++-||++.....-.. --..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 75211 111122344444433 3444 68999999999999999842111110 12366
Q ss_pred EEEEe--CC-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe
Q 002389 776 SMSVV--QG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 776 sla~s--dg-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
|+.++ +. .+++|+.|...++||.+.... + +. ..... ...|. .+++.++.|....-+.
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lk-----s---~~--s~~~~--~~~pp--------~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLK-----S---FR--SDGTM--NTCPP--------KDCRCVRYFSPGHLKN 264 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhhhhhhcc-----C---CC--CCccc--cCCCC--------cccchhheecCccccC
Confidence 77776 33 388899999999999643110 0 00 00000 00000 0112222222111100
Q ss_pred EEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 002389 853 ISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 853 i~~-l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl 898 (929)
.+. ...--..++.+.|+|+|.-|...-....|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 0001123577899999987776666778999999887764433
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.6e-09 Score=127.82 Aligned_cols=267 Identities=14% Similarity=0.085 Sum_probs=180.3
Q ss_pred EEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEEccCCeEEEEEEe
Q 002389 656 IYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 656 ~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~---~LaSgs~DgtIrIWDl~tg~~~~~~~~ 731 (929)
.|+ |+..+.+..+..|.||...++.+ +..+.+|..+++++.+.|... ++++++.||+|++||...+.+......
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~--i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATGEC--ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchHhh--hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 455 66677777788999999999976 678999999999999988665 478999999999999998876544333
Q ss_pred ccCCCeEEecc---CCCEEE-EEecCC------------eEEEEeCCCce----eeeccCCCeEEEEEe-CCEEEEEECC
Q 002389 732 ATKEPIRKLDT---YGKTIF-ASTQGH------------RMKVIDSSRTL----KDIYRSKGIKSMSVV-QGKIYIGCMD 790 (929)
Q Consensus 732 ~h~~~V~s~s~---~g~~L~-sgs~Dg------------~V~IWDl~~~~----~~l~~~~~V~sla~s-dg~llsgs~D 790 (929)
...-.+..+.+ +....+ ....+. +++-+.+.+.. ........-.++.+. .|.+.....+
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~ 180 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM 180 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence 22211111111 111111 111111 11111111000 000011113455555 6667777788
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC----CCeEEEecCCCCCeEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR----KPQISIAPEKGTTIQAM 866 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~----~~~i~~l~~h~~~V~sl 866 (929)
..+.+|+...+..... +...-..|...+++.++||.+.++++.. .||.|.+|.--. ....+.+.-|...|.++
T Consensus 181 ~~~~~~~v~~~~~~~~--~~~~~~~Htf~~t~~~~spn~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTS--SRDITVHHTFNITCVALSPNERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred eeEEEEEecccceeec--cchhhhhhcccceeEEeccccceEEEec-cCCcEEEEeccccccccccceEEEeccccccee
Confidence 8899999887552211 1122234566689999999999998877 567899998432 23456677789999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEEee
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs--~dg~~LaSgs~DG~I~IWd 927 (929)
+|++||.+|.|||..|.+-+|.+.++++-.--+-+++|..+. +|++..+....|+.|.+-.
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 999999999999999999999999988543334557788865 4577888888899988754
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=4.2e-09 Score=111.92 Aligned_cols=229 Identities=11% Similarity=0.080 Sum_probs=156.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE-eccCCCeEEeccCCCEEEEEec-C------CeEEEEeCC--
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV-IATKEPIRKLDTYGKTIFASTQ-G------HRMKVIDSS-- 762 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~-~~h~~~V~s~s~~g~~L~sgs~-D------g~V~IWDl~-- 762 (929)
...+++|+.|...++.|..+| .+||+.+.-+...... .+..-.+..+-...++++.++. + +.|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345589999998888888666 6999987532111111 1111122223344555554432 2 489999943
Q ss_pred CceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccc--cCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 763 RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 763 ~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~--~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
++..++.....|.++.+..+++++.- .+.|++|...++-... +.+. ...+.+.++..+.+..+++.-+..-|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l-----~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLL-----HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhhe-----eeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 45666667888999999888766543 6788999887532111 0011 11222444444444444443333458
Q ss_pred eEEEEECCCCCe--EEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCC---CCeEEEEEc--CC
Q 002389 841 NIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGTQQKVGRISAG---SKITSLLTA--ND 912 (929)
Q Consensus 841 tI~IWDl~~~~~--i~~l~~h~~~V~slafSpdg~~LaSgS~DG~-I~IWdl~sg~~i~tl~~h---~~Vtsvs~d--g~ 912 (929)
.|.+-|+..... ......|...|.+++.+-+|..+||+|..|+ |+|||..+|+++..++.+ ..|.+++|+ ..
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999866554 4678899999999999999999999999987 799999999999999876 339999887 56
Q ss_pred EEEEEECCCcEEEeec
Q 002389 913 IVLCGTETGLIKGWIP 928 (929)
Q Consensus 913 ~LaSgs~DG~I~IWdi 928 (929)
+|+++|+.|+++||.+
T Consensus 240 ~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEEcCCCeEEEEEe
Confidence 9999999999999864
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.20 E-value=2.4e-08 Score=108.06 Aligned_cols=231 Identities=13% Similarity=0.144 Sum_probs=161.7
Q ss_pred CCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
...+..+.|+ +. .|..|+.||. ++|+...... ..........|--+-|+.+=--+++...-+.+++.+++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceE
Confidence 4567777788 44 5777777775 6787765321 1111111223555556543222444433456999999888766
Q ss_pred EEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc----CCCeEEEEEeCC-E-EEE--EECCCcEEEE
Q 002389 727 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR----SKGIKSMSVVQG-K-IYI--GCMDSSIQEL 796 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~----~~~V~sla~sdg-~-lls--gs~Dg~I~iw 796 (929)
|... ...+|.++.-+.++++++-.+. |+|||++. .+.++.. ..++..++++.+ . ++- ....|.|.+|
T Consensus 82 Ce~~--fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIF--FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEe--cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 6655 3456888888888888877666 99999983 3344332 334666666633 3 332 3357899999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC--CCeEEEEEecCCCE
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG--TTIQAMAVVEDFIY 874 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~--~~V~slafSpdg~~ 874 (929)
|..+-+. +.....|..++.++++++++.++++.|..|..||+|...+|+.+..++... ..|.+++|+||+++
T Consensus 159 d~~nl~~------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 159 DTINLQP------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred Eccccee------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9987332 344578999999999999999999998666678999999999888776443 36889999999999
Q ss_pred EEEEeCCCcEEEEECCC
Q 002389 875 LNYNSSASSLQIWLRGT 891 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~s 891 (929)
|++.|..++|+||.+++
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999997654
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=6.5e-10 Score=120.73 Aligned_cols=255 Identities=12% Similarity=0.119 Sum_probs=178.7
Q ss_pred CCCCEEEEEEe-CC---EEEEEECCCeEEEEECCCCCeeEE----EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 648 CSGAVTALIYY-KG---LLCSGFSDGSIKMWDIKKQSAMLV----WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 648 H~~~Vtsl~fs-~~---~LaSGs~DGtIrIWD~~~~~~~~i----~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
-...|+.++|. ++ .+...+.|-.+....+........ ......+++|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 35678888887 33 344454777777777765443211 1334556677776653 34688899999999999
Q ss_pred ccCCeEE--EEEEeccCCCeEEe---ccCCCEEEEEecC--CeEEEEeCCCceeeeccC------------CCeEEEEEe
Q 002389 720 MVQRKLE--LIEVIATKEPIRKL---DTYGKTIFASTQG--HRMKVIDSSRTLKDIYRS------------KGIKSMSVV 780 (929)
Q Consensus 720 l~tg~~~--~~~~~~h~~~V~s~---s~~g~~L~sgs~D--g~V~IWDl~~~~~~l~~~------------~~V~sla~s 780 (929)
...+... .........++..+ ..+...+++|+.. +.+.+||+.+..+.+... -.++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 9855421 11111222333333 2345567778888 899999999774444321 124456664
Q ss_pred CC----EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-
Q 002389 781 QG----KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI- 855 (929)
Q Consensus 781 dg----~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~- 855 (929)
+| ++++++.-+.+++||.+.++ .|+..+.....+++++...|++.++..+. .-+.+..||.+++.....
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCCCcEEEEec-ccchhheecccCceeeccc
Confidence 33 49999999999999998643 23344455678888888888887766554 447899999999887765
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d 910 (929)
+.+-.+.|+++..+|.+++++++|-|..++|+|.++.+++......+.++++-+.
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR 340 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence 8888999999999999999999999999999999998887777666667776553
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.19 E-value=2.9e-11 Score=140.32 Aligned_cols=236 Identities=13% Similarity=0.088 Sum_probs=163.7
Q ss_pred CCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.||++.|+.++.+ ++ +++++|.|..|++|.+.++. ++..+.||+++|++++|+|-- +.+.||++++||.+-.
T Consensus 229 rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE 302 (1113)
T ss_pred CCCccccchhccchhhhhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEecccccc
Confidence 4999999999998 44 79999999999999999885 488899999999999999954 7889999999998711
Q ss_pred eEEEE---EEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEc
Q 002389 724 KLELI---EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 724 ~~~~~---~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl 798 (929)
-.... .....+..+.+ +...+..+.+++.|+.-..|.+......-..-..++...-.+...++.-.+..+.+|++
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeec
Confidence 10000 00011122332 45667788999999988888765221100000001111111233555666788899999
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceE-EEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~-~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
.+|....+ ..+|...+..+.+||-... ..+.+ .||.+.|||+-.|..++.+......+..-+||+||..++.
T Consensus 383 ~~g~l~H~------l~ghsd~~yvLd~Hpfn~ri~msag-~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 383 YTGQLLHN------LMGHSDEVYVLDVHPFNPRIAMSAG-YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ccchhhhh------hcccccceeeeeecCCCcHhhhhcc-CCCceEeeecccCCcceeeecccceeeccccCCCCceEec
Confidence 99865543 3567888899999986443 33333 6789999998877766544333355777899999999999
Q ss_pred EeCCCcEEEEECCCCcE
Q 002389 878 NSSASSLQIWLRGTQQK 894 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~ 894 (929)
...-|.++|.....++.
T Consensus 456 sd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCCCceEEeccCCCcc
Confidence 88889999987655544
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.18 E-value=7.7e-09 Score=109.96 Aligned_cols=270 Identities=17% Similarity=0.226 Sum_probs=182.5
Q ss_pred CCEEEEEEe-CC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeE
Q 002389 650 GAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 650 ~~Vtsl~fs-~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~ 725 (929)
+.|.-+.|. +. .|...+.|+.|.+|++...+. ...+.....++.+++|+|||+. |.+...|-.|.||.+.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 356667787 44 577788899999999998764 5667778889999999999977 56777899999999999887
Q ss_pred EEEEEeccCCCeEEeccCCCEEEEEe------------------------------------cCCeEEEEeCCCcee--e
Q 002389 726 ELIEVIATKEPIRKLDTYGKTIFAST------------------------------------QGHRMKVIDSSRTLK--D 767 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s~~g~~L~sgs------------------------------------~Dg~V~IWDl~~~~~--~ 767 (929)
.......+.....+|.++|++.+.++ .++.+.+||.--..+ .
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 76666667777788999998766652 233555666432222 2
Q ss_pred eccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCcc-------------------ceec------------ccc----
Q 002389 768 IYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVE-------------------REIK------------APF---- 810 (929)
Q Consensus 768 l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~-------------------~~i~------------~~~---- 810 (929)
+.-+-++..++|+ -++ ++.|+.|+.+++.+--+-+. ++.. .|.
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 2234678889997 366 77799999988765422100 0000 000
Q ss_pred cccc-------------------------cCCCCeEEEEEcCCceEEEEEec-CCCeEEEEECCCCCeEEEecCCCCCeE
Q 002389 811 KSWR-------------------------LQSKPINSLVVYKDWLYSASSSV-EGSNIKEWRRHRKPQISIAPEKGTTIQ 864 (929)
Q Consensus 811 ~~~~-------------------------~~~~~I~sl~~~~d~i~~~s~S~-dDgtI~IWDl~~~~~i~~l~~h~~~V~ 864 (929)
..|. .....+..+++++|..+.++-.. --+.+-+||++..++...+ ....+|+
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 0000 00122345666677666665431 1157899999887754443 2346799
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCc
Q 002389 865 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGL 922 (929)
Q Consensus 865 slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~ 922 (929)
...|+|....++.+.....+++|.......+..-..+-.|..+.|. |..++-.+.|..
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999999888888777778999987654445444434458888886 888888888763
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=9.2e-09 Score=119.99 Aligned_cols=230 Identities=9% Similarity=0.080 Sum_probs=147.7
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS---ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 745 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs---~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~ 745 (929)
..|.+||..+... +.+..+...+.+.+|+|||+.|+..+ .+..+.+||+.+|+............-..|+|+|+
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 4799999987653 33445677899999999999987654 34579999998886433322211122247899999
Q ss_pred EEEEE-ecCC--eEEEEeCCC-ceeeecc-CCCeEEEEEe-CCE-EEEEEC-CCc--EEEEEccCCccceeccccccccc
Q 002389 746 TIFAS-TQGH--RMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK-IYIGCM-DSS--IQELAVSNNVEREIKAPFKSWRL 815 (929)
Q Consensus 746 ~L~sg-s~Dg--~V~IWDl~~-~~~~l~~-~~~V~sla~s-dg~-llsgs~-Dg~--I~iwDl~tg~~~~i~~~~~~~~~ 815 (929)
.++.. +.+| .|++||+.. ....+.. ...+....|+ ||+ ++..+. ++. |+.+|+.++....+ ..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-------t~ 328 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-------TW 328 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-------ec
Confidence 88765 3344 588899873 3333333 3346677887 776 655554 344 44556665543322 11
Q ss_pred CCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc---EEEEECC
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS---LQIWLRG 890 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dD--gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~---I~IWdl~ 890 (929)
.........++|++.+++..+.++ ..|.+||+.++.... +... .......|+|||++|+.++.++. +.++++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 233345677889887765544333 468889998887443 3322 22346789999999999988765 666777
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 002389 891 TQQKVGRISAG-SKITSLLTAN 911 (929)
Q Consensus 891 sg~~i~tl~~h-~~Vtsvs~dg 911 (929)
+|.....+.+| +.+...+|++
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 56666667665 3466666664
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=5.7e-09 Score=110.93 Aligned_cols=230 Identities=11% Similarity=0.141 Sum_probs=158.6
Q ss_pred CEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCc--EEEEEEcCCCCEEE-EEeCC------CeEEEEEc
Q 002389 651 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA--VTSFSLFEPGESLL-SGSAD------KTIGVWQM 720 (929)
Q Consensus 651 ~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~--Vtslafspdg~~La-Sgs~D------gtIrIWDl 720 (929)
...+++|+ |.--++.+.|.-.+||+.+.-+.. ..-+.+.+. +.-+-| -.++|+ .||.+ +.+.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~--~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKES--ASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhh--hhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 44568898 655555556666899998753221 111222222 222333 223432 34433 47999994
Q ss_pred cCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceee---e---ccCCCeEEEEEeCC-EEEE--EECCC
Q 002389 721 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD---I---YRSKGIKSMSVVQG-KIYI--GCMDS 791 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~---l---~~~~~V~sla~sdg-~lls--gs~Dg 791 (929)
... .+........+|.++....+.++++- .+.|++|......+. + ...++..++.-..+ .+++ |-.-|
T Consensus 83 ~k~--~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 83 LKE--RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred ccC--cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 333 34455567788998888888887776 468999988733322 2 22455555555533 3444 66779
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC--CCCeEEEEEe
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAMAVV 869 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h--~~~V~slafS 869 (929)
.|++.|+...... +......|...|.++....++...++.|..|.-|+|||..+|..+..+... ...|.+++||
T Consensus 160 qvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 160 QVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred eEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 9999999875442 124457899999999999999999999877778999999999988877533 3479999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCC
Q 002389 870 EDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 870 pdg~~LaSgS~DG~I~IWdl~s 891 (929)
||+.+|+++|+-|+++||.+..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999998654
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=6e-10 Score=123.58 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=171.5
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--ecc--CCCEEEEEecCCeEEEE
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT--YGKTIFASTQGHRMKVI 759 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~--~g~~L~sgs~Dg~V~IW 759 (929)
...+..|.+.|..+.|+..|..|+|||.|..|.+||...++.......+|...|.. |-| +...+++.+.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45678999999999999999999999999999999999888766666677776652 433 34578899999999987
Q ss_pred eCCC------ceeeeccCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCccceecccccccccCC---CCeEEEEEcC
Q 002389 760 DSSR------TLKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS---KPINSLVVYK 827 (929)
Q Consensus 760 Dl~~------~~~~l~~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~---~~I~sl~~~~ 827 (929)
.+.. ......+...|.-++.. ...+++++.|+.+.-+|++.+........ -..+. -...+++.+|
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c---r~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC---READEKERVGLYTIAVDP 291 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee---eccCCccceeeeeEecCC
Confidence 7551 11122335567777764 33499999999999999988654332110 01112 2567788888
Q ss_pred CceEEEEEecCCCeEEEEECCCCC------eEEEecC------CCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCC-
Q 002389 828 DWLYSASSSVEGSNIKEWRRHRKP------QISIAPE------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR--GTQ- 892 (929)
Q Consensus 828 d~i~~~s~S~dDgtI~IWDl~~~~------~i~~l~~------h~~~V~slafSpdg~~LaSgS~DG~I~IWdl--~sg- 892 (929)
...+..+.++.|...++||.+.-. .+..+.. ..-.|++++|+.++.-+.+...|-.|+++.. ..|
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 777665556577889999964311 1222221 2237999999988888888888999999963 334
Q ss_pred ---------cEEEE-EeCCCC---eEEEEEc---CCEEEEEECCCcEEEee
Q 002389 893 ---------QKVGR-ISAGSK---ITSLLTA---NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 893 ---------~~i~t-l~~h~~---Vtsvs~d---g~~LaSgs~DG~I~IWd 927 (929)
..+.. +++|.. |.++.|- ..++++|++-|.|.||+
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 23444 778822 7777754 46999999999999997
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.5e-09 Score=119.41 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=164.4
Q ss_pred cCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe---ccCCCEEEEEecCCeEEEEeCCCc
Q 002389 689 EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL---DTYGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 689 gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~---s~~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
+|...-+.|..+|||+| ++||..--.|++||+.+-.+. ........+..| +.+-..++....|.+|-+....+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 67888899999999999 678888899999999864432 222233334433 344445666677777776665544
Q ss_pred eeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 002389 765 LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 842 (929)
Q Consensus 765 ~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI 842 (929)
...+.-...-..++++ .-.+++++....|+-+++..|... ..+......++++..++..-+++++. .+|.|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~~hgLla~Gt-~~g~V 199 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINEEHGLLACGT-EDGVV 199 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccc------cccccccccceeeeecCccceEEecc-cCceE
Confidence 4444444445566666 455899999999999999987643 22344568899999988776666554 78999
Q ss_pred EEEECCCCCeEEEec------CCCC-----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEE
Q 002389 843 KEWRRHRKPQISIAP------EKGT-----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLT 909 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~------~h~~-----~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~ 909 (929)
..||.+....+..+. .|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+++..-... -+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999998776554442 2333 4999999999999999999999999999998886554433 45888888
Q ss_pred c----CCEEEEEECCCcEEEeec
Q 002389 910 A----NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 910 d----g~~LaSgs~DG~I~IWdi 928 (929)
. ++.++|. +...++|||.
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred cccCCCceEEec-chHHhhhccc
Confidence 4 2345544 4567999985
No 211
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=1.7e-09 Score=115.60 Aligned_cols=264 Identities=15% Similarity=0.164 Sum_probs=169.6
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCC---eeEEEEeccCC------------CcEEEEEEcCCCCE--EEE
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS---AMLVWDVKEHR------------KAVTSFSLFEPGES--LLS 708 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~---~~~i~~l~gH~------------~~Vtslafspdg~~--LaS 708 (929)
..+-|.+|.|. |++||||..+|.|.++.-.... .....+++.|. ..|..+.|.++++. ++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999998 7799999999999999655322 22334555664 46888999988764 666
Q ss_pred EeCCCeEEEEEccCCeEEEEEE-e---ccCCCeEEe-----ccCCCEEEEEecCCeEEEEeCCCceeeecc--CCCeEEE
Q 002389 709 GSADKTIGVWQMVQRKLELIEV-I---ATKEPIRKL-----DTYGKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSM 777 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~-~---~h~~~V~s~-----s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~--~~~V~sl 777 (929)
.+.|++|++|.+.......... . +....+.++ .++...+.+. +.+.+.. .-.|.++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~-------------prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEAS-------------PRRVYANAHTYHINSI 170 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeee-------------eeeeccccceeEeeee
Confidence 7789999999987543211000 0 011111111 1121111111 1112221 2348889
Q ss_pred EEe-CCEEEEEECCCcEEEEEccCCcc----ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe
Q 002389 778 SVV-QGKIYIGCMDSSIQELAVSNNVE----REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 778 a~s-dg~llsgs~Dg~I~iwDl~tg~~----~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
++. |+..+....|=.|.+|++.-... ..++ |. .+..-...|++-.+||........|+..|+|++-|++...+
T Consensus 171 S~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIK-P~-nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 171 SVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIK-PA-NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eecCccceEeeccceeeeeccccccCCceeEEEcc-cc-CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 987 77777788888999998864221 1111 10 01111356788899998777777777789999999874321
Q ss_pred E----EE------------ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCCcEEEEEeCCC-------------
Q 002389 853 I----SI------------APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR-GTQQKVGRISAGS------------- 902 (929)
Q Consensus 853 i----~~------------l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl-~sg~~i~tl~~h~------------- 902 (929)
. +. +..--..|..+.|+++|+|+++-+ =-+|++||+ -..+++.+++.|.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 1 01 111123688899999999999864 378999998 4567788888772
Q ss_pred CeEE---EEEcCC--EEEEEECCCcEEEee
Q 002389 903 KITS---LLTAND--IVLCGTETGLIKGWI 927 (929)
Q Consensus 903 ~Vts---vs~dg~--~LaSgs~DG~I~IWd 927 (929)
.|.. ++|+|+ +++||+....+++++
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEec
Confidence 1322 667766 999999999999987
No 212
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=4.2e-08 Score=114.79 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=143.4
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCeEEEEEEeccCCCe--EEeccC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLELIEVIATKEPI--RKLDTY 743 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~---DgtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~~ 743 (929)
..|.+||..+.. ...+..|...+.+..|+|||+.|+..+. +..|.+||+.+++.... ..+...+ ..|+|+
T Consensus 182 ~~l~~~d~dg~~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGAN---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCC---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--ecCCCcccCcEECCC
Confidence 478899987664 3456678889999999999999887653 46899999988865332 2233333 368999
Q ss_pred CCEEE-EEecCC--eEEEEeCCC-ceeeeccCC-CeEEEEEe-CCE-EEEEEC-CC--cEEEEEccCCccceeccccccc
Q 002389 744 GKTIF-ASTQGH--RMKVIDSSR-TLKDIYRSK-GIKSMSVV-QGK-IYIGCM-DS--SIQELAVSNNVEREIKAPFKSW 813 (929)
Q Consensus 744 g~~L~-sgs~Dg--~V~IWDl~~-~~~~l~~~~-~V~sla~s-dg~-llsgs~-Dg--~I~iwDl~tg~~~~i~~~~~~~ 813 (929)
|+.++ +.+.++ .|++||+.. ....+.... ......|+ ||+ ++..+. +| .|+++|+.++....+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt------ 330 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS------ 330 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee------
Confidence 99875 445555 477778763 334443333 34567776 666 555543 33 5788887765443331
Q ss_pred ccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEE
Q 002389 814 RLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA------SSLQ 885 (929)
Q Consensus 814 ~~~~~~I~sl~~~~d~i~~~s~S~dD--gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D------G~I~ 885 (929)
.+...+....++|++..++..+.++ ..|.+||..++... .+. +...+....|+|||++|+..+.+ ..++
T Consensus 331 -~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 331 -FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred -cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 1133345567888887766544332 36888898666533 232 22356788999999998775543 2577
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEEc
Q 002389 886 IWLRGTQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 886 IWdl~sg~~i~tl~~h~~Vtsvs~d 910 (929)
++|+..+.. ..+...+.+..-+|+
T Consensus 408 ~~dl~g~~~-~~l~~~~~~~~p~Ws 431 (435)
T PRK05137 408 TVDLTGRNE-REVPTPGDASDPAWS 431 (435)
T ss_pred EEECCCCce-EEccCCCCccCcccC
Confidence 778765544 444433334444454
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.09 E-value=5.3e-09 Score=116.98 Aligned_cols=252 Identities=17% Similarity=0.188 Sum_probs=166.8
Q ss_pred CCCCCEEEEEEeC-CEEEEEECCCeEEEE-ECCCCCeeEEEEeccCCCcEE-EEEEcC-------CCCEEEEEeCCCeEE
Q 002389 647 KCSGAVTALIYYK-GLLCSGFSDGSIKMW-DIKKQSAMLVWDVKEHRKAVT-SFSLFE-------PGESLLSGSADKTIG 716 (929)
Q Consensus 647 gH~~~Vtsl~fs~-~~LaSGs~DGtIrIW-D~~~~~~~~i~~l~gH~~~Vt-slafsp-------dg~~LaSgs~DgtIr 716 (929)
-|...|.|+.|+. .-++..++|..+.+| |+.+.+.+ +..+. .+.|. .+..-| ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 4666777999984 456666666666666 44433221 11111 11111 111111 223588888999998
Q ss_pred EEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeecc--CCCeEEEEEe-CCEEEEEECCC
Q 002389 717 VWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSMSVV-QGKIYIGCMDS 791 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~--~~~V~sla~s-dg~llsgs~Dg 791 (929)
+-+- .++. ......|...+.+ |+++|.-+++++.||.|++|.-.+.++.... ...|.|++|. +..-+.-+..+
T Consensus 89 il~k-~~rV-E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 89 ILNK-SARV-ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred Eecc-cchh-hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 8874 3442 2233456666664 8999999999999999999998876665433 5679999996 43322234445
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
.+.+=.+..+. + .-.|+.|.+.|.++.+++.....++++ +|-..++||..+.. +.....|..+|++++|.||
T Consensus 167 h~~IKpL~~n~-k-----~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~-Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 167 HISIKPLAANS-K-----IIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN-LFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred eEEEeeccccc-c-----eeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc-cccCChhccceeeeeeccc
Confidence 55555544321 1 135889999999999999888888776 88899999987655 4556679999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEc--CCEEEEEECCCcEEE
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTA--NDIVLCGTETGLIKG 925 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~d--g~~LaSgs~DG~I~I 925 (929)
+.++.|| -++.+ +... +.|..++|+ |..+++|+..|.+.+
T Consensus 239 -~~~~v~S-~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 -KDYLLWS-YNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -cceeeee-eeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 5555554 23333 3322 457777765 889999999987754
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=6.9e-09 Score=121.10 Aligned_cols=209 Identities=12% Similarity=0.076 Sum_probs=135.5
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECC---CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE--
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVW-- 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~D---GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIW-- 718 (929)
.|.+.|.+..|+ ++ +|+.++.+ ..|++||+.+++...+..+.+|. ..++|+|||+.|+.++ .+|.+.||
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEE
Confidence 577889999999 44 77776643 47999999987654455555554 4679999999987764 68876655
Q ss_pred EccCCeEEEEEEeccCCCe--EEeccCCCEEEEEe-cCCeEEEEeCC--CceeeeccCCCeEEEEEe-CCE-EEEEECCC
Q 002389 719 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFAST-QGHRMKVIDSS--RTLKDIYRSKGIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V--~s~s~~g~~L~sgs-~Dg~V~IWDl~--~~~~~l~~~~~V~sla~s-dg~-llsgs~Dg 791 (929)
|+.++.... ...+...+ ..|+++|+.++.++ .++...+|+++ +.......... .+..|+ +|+ ++.++.+
T Consensus 278 d~~~~~~~~--lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~- 353 (429)
T PRK01742 278 GANGGTPSQ--LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMINGD- 353 (429)
T ss_pred ECCCCCeEe--eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcCC-
Confidence 665665332 22233323 36899999877665 56778888764 22122212222 345666 766 5555554
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC--CCCCeEEEecCCCCCeEEEEEe
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR--HRKPQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl--~~~~~i~~l~~h~~~V~slafS 869 (929)
.+..||+.++........ .......++|++.+++..+ .++.+.+|++ ..+...+.+.+|.+.+...+|+
T Consensus 354 ~i~~~Dl~~g~~~~lt~~--------~~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSST--------FLDESPSISPNGIMIIYSS-TQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred CEEEEECCCCCeEEecCC--------CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 566799988764432111 1123567899998877766 3555666663 3466677788888889999999
Q ss_pred cC
Q 002389 870 ED 871 (929)
Q Consensus 870 pd 871 (929)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 84
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2e-08 Score=117.36 Aligned_cols=229 Identities=13% Similarity=0.068 Sum_probs=144.6
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEeccCCCeEEeccCCC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 745 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~ 745 (929)
.+|.+||..+.. .+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...............|+++|+
T Consensus 184 ~~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 468999987654 34455677889999999999998877643 469999998886533322111112236899999
Q ss_pred EEEE-EecCC--eEEEEeCCC-ceeeeccCC-CeEEEEEe-CCE-EEEEE-CCCc--EEEEEccCCccceeccccccccc
Q 002389 746 TIFA-STQGH--RMKVIDSSR-TLKDIYRSK-GIKSMSVV-QGK-IYIGC-MDSS--IQELAVSNNVEREIKAPFKSWRL 815 (929)
Q Consensus 746 ~L~s-gs~Dg--~V~IWDl~~-~~~~l~~~~-~V~sla~s-dg~-llsgs-~Dg~--I~iwDl~tg~~~~i~~~~~~~~~ 815 (929)
.++. .+.+| .|++||+.. ....+..+. .....+|+ ||+ ++.++ .+|. ++++|+.++....+. .
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-------~ 333 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-------F 333 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-------c
Confidence 7764 45555 699999873 333333332 24567787 676 55554 3444 666676665443321 1
Q ss_pred CCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECC
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRG 890 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dD--gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---G~I~IWdl~ 890 (929)
++.......++|++.+++..+.++ ..|.+||..++... .+. +........|+|||++++..+.+ +.+++++..
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 223344678889987766544333 36999999888754 333 22345567999999998877653 457777874
Q ss_pred CCcEEEEEeCC-CCeEEEEEc
Q 002389 891 TQQKVGRISAG-SKITSLLTA 910 (929)
Q Consensus 891 sg~~i~tl~~h-~~Vtsvs~d 910 (929)
|.....+..+ +.+...+|+
T Consensus 412 -g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred -CCceEEcccCCCCCCCCccC
Confidence 4445555543 345555554
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=1.1e-07 Score=108.39 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=153.0
Q ss_pred EEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec
Q 002389 662 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD 741 (929)
Q Consensus 662 LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s 741 (929)
+++-..+|.|.|.|..+.+. +.++......-..+.|+|||+++++++.||.|.++|+.+++.......+....-.+++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 45566789999999998754 6777655444456789999999999999999999999999866555554444445788
Q ss_pred cCCCEEEEEe-cCCeEEEEeCCC--ceeeecc--------CCCeEEEEEe--CCEEEEEEC-CCcEEEEEccCCccceec
Q 002389 742 TYGKTIFAST-QGHRMKVIDSSR--TLKDIYR--------SKGIKSMSVV--QGKIYIGCM-DSSIQELAVSNNVEREIK 807 (929)
Q Consensus 742 ~~g~~L~sgs-~Dg~V~IWDl~~--~~~~l~~--------~~~V~sla~s--dg~llsgs~-Dg~I~iwDl~tg~~~~i~ 807 (929)
++|++++++. ..+.+.++|... ..+.+.. ..++..+..+ ...++..-. .+.|.+.|..........
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 9999998775 678999999873 3333322 1245555554 333444444 477877887664322110
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC------------------------------------
Q 002389 808 APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP------------------------------------ 851 (929)
Q Consensus 808 ~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~------------------------------------ 851 (929)
. ..-+...+...+.+++.+.+.....++.|-++|..++.
T Consensus 167 ----~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 167 ----T-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp ----E-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ----e-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 0 11244556667777766544433233345555544332
Q ss_pred -------------------eEEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEECCCCcEEEEEeCCC--CeEE
Q 002389 852 -------------------QISIAPEKGTTIQAMAVVEDFIYLNYN----SSASSLQIWLRGTQQKVGRISAGS--KITS 906 (929)
Q Consensus 852 -------------------~i~~l~~h~~~V~slafSpdg~~LaSg----S~DG~I~IWdl~sg~~i~tl~~h~--~Vts 906 (929)
.++.+...... .-+..+|+++++... ...++|.++|.++.+.+.++.... ++..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 22333222233 456679999999887 455899999999998888887443 3778
Q ss_pred EEEc--CCEEEEE--ECCCcEEEeec
Q 002389 907 LLTA--NDIVLCG--TETGLIKGWIP 928 (929)
Q Consensus 907 vs~d--g~~LaSg--s~DG~I~IWdi 928 (929)
+.|+ |+.+..+ ..+|.|.|||.
T Consensus 321 ~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 321 MEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cEECCCCCEEEEEEecCCCEEEEEEC
Confidence 7776 6644433 33347999984
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.4e-08 Score=115.23 Aligned_cols=230 Identities=11% Similarity=0.074 Sum_probs=140.3
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEeccCCCeEEeccCCC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK 745 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~ 745 (929)
..|.+||..+.. ...+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|+|+|+
T Consensus 176 ~~L~~~D~dG~~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQN---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCC---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 467777876543 34455778889999999999998876643 459999999887543321211122346899999
Q ss_pred EEEE-EecCCeEEEEeC--C-CceeeeccCC-CeEEEEEe-CCE-EEEEE-CCCcEEEEEcc--CCccceeccccccccc
Q 002389 746 TIFA-STQGHRMKVIDS--S-RTLKDIYRSK-GIKSMSVV-QGK-IYIGC-MDSSIQELAVS--NNVEREIKAPFKSWRL 815 (929)
Q Consensus 746 ~L~s-gs~Dg~V~IWDl--~-~~~~~l~~~~-~V~sla~s-dg~-llsgs-~Dg~I~iwDl~--tg~~~~i~~~~~~~~~ 815 (929)
.++. .+.+|...+|.+ . +....+..+. ......|+ ||+ ++..+ .+|...+|.+. ++....+. .
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-------~ 325 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-------F 325 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-------c
Confidence 8864 567776666654 3 2333333322 34566787 776 55444 34666666553 33322221 1
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECC
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRG 890 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG---~I~IWdl~ 890 (929)
++.......++|++.+++..+.+++ .|.+||..++...... .+ .......|+|||++|+.++.++ .+++.+.
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 1222335678898887765543333 6999999888754332 22 3346789999999998877554 2444455
Q ss_pred CCcEEEEEeCC-CCeEEEEEcC
Q 002389 891 TQQKVGRISAG-SKITSLLTAN 911 (929)
Q Consensus 891 sg~~i~tl~~h-~~Vtsvs~dg 911 (929)
+|.....+..+ +.+...+|++
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCCceEEeecCCCCCCCCccCC
Confidence 45556556544 3355555553
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=8.8e-09 Score=108.12 Aligned_cols=181 Identities=11% Similarity=0.181 Sum_probs=130.0
Q ss_pred CCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCe-eEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEc
Q 002389 646 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQM 720 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~-~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl 720 (929)
..|..++++..|+ +++|.++|-|.+..|||++++.. .....+-+|...|..++|...+.. ++|.|.||.+|++|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 3678999999998 67999999999999999998722 233456799999999999986654 899999999999999
Q ss_pred cCCeEEEEEEe--ccCCCeEEecc---CCCEEEEEecC-CeEEEEeCCC---ceeeecc-CCCeEEEEEe---CCEEEEE
Q 002389 721 VQRKLELIEVI--ATKEPIRKLDT---YGKTIFASTQG-HRMKVIDSSR---TLKDIYR-SKGIKSMSVV---QGKIYIG 787 (929)
Q Consensus 721 ~tg~~~~~~~~--~h~~~V~s~s~---~g~~L~sgs~D-g~V~IWDl~~---~~~~l~~-~~~V~sla~s---dg~llsg 787 (929)
+.-+-...... ....+...+++ +.+++++-..| ..|.+.|++- ....+.. ...|+.++|. ..++.++
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 87542222221 22345555543 45577766554 5899999983 3344444 4569999996 4458899
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK 827 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~ 827 (929)
+.|..+-+||+..........|.-.|. .+..|+.+++.+
T Consensus 307 GDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 307 GDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred CCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence 999999999998744333333434444 466777787763
No 219
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.03 E-value=4.7e-09 Score=117.36 Aligned_cols=226 Identities=11% Similarity=0.052 Sum_probs=154.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC----eEEec----cCCCEEEEEecCCeEEEEe
Q 002389 689 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP----IRKLD----TYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~----V~s~s----~~g~~L~sgs~Dg~V~IWD 760 (929)
.|..-|.|+.|+.+...+.+++++..++-||+.+........+...-| +...+ ...+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 567778899998877766666655555555665443222111111111 11111 1234788889999999988
Q ss_pred CCCceee-ecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 761 SSRTLKD-IYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 761 l~~~~~~-l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
-.+.... +.. ...+.+-.|+ ||. +++.+.||.|++|.-.. .... .......+|+++++.|+....+-+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRS------tl~Q~~~~v~c~~W~p~S~~vl~c- 163 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRS------TVVQNEESIRCARWAPNSNSIVFC- 163 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHH------HHhhcCceeEEEEECCCCCceEEe-
Confidence 7643332 222 3447777887 887 99999999999998654 2211 112247889999999887665544
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcCCEEE
Q 002389 837 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTANDIVL 915 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~dg~~La 915 (929)
.++.+.|-.+.....+-..+.|.+-|.++.|+|....+++|++|-..+|||-. |+.+++-..| .+|++++|+++.++
T Consensus 164 -~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~ 241 (737)
T KOG1524|consen 164 -QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDY 241 (737)
T ss_pred -cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccce
Confidence 46778888777666666788999999999999999999999999999999974 5666666666 67999999976554
Q ss_pred EEECCCcEE
Q 002389 916 CGTETGLIK 924 (929)
Q Consensus 916 Sgs~DG~I~ 924 (929)
..++-++.+
T Consensus 242 ~v~S~nt~R 250 (737)
T KOG1524|consen 242 LLWSYNTAR 250 (737)
T ss_pred eeeeeeeee
Confidence 444434444
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.02 E-value=2.1e-09 Score=111.42 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=149.3
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeC
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl 761 (929)
+...+++|.+.|+++.|-.++. |++|..-|.|++|++.+.+..+.....+...|+.+. ..++.+.+-+.|+.+.+|++
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 4677889999999999977665 999999999999999887755554445666777664 23478889999999999998
Q ss_pred CCceeeeccCCCeEEEEE-----e-CCE----EEEEECCC--cEEEEEccCCccceecccccccccCCCCeEEEE-EcCC
Q 002389 762 SRTLKDIYRSKGIKSMSV-----V-QGK----IYIGCMDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLV-VYKD 828 (929)
Q Consensus 762 ~~~~~~l~~~~~V~sla~-----s-dg~----llsgs~Dg--~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~-~~~d 828 (929)
........+.-.++++.| . +++ ++..-..| .+++-|........+..+ .-......+.+.. -+..
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd--~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD--SERSKLGSVMCQDKDHAC 162 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc--hhccccCceeeeeccccc
Confidence 742111111111222222 1 111 11100000 022222222111111111 1112234444444 2222
Q ss_pred -ceEEEEEecCCCeEEEEECCCC----------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CcE-
Q 002389 829 -WLYSASSSVEGSNIKEWRRHRK----------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT--QQK- 894 (929)
Q Consensus 829 -~i~~~s~S~dDgtI~IWDl~~~----------~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s--g~~- 894 (929)
..+.+..+.++|.+.+||+.++ +.......|..+|.++.|.+....=++|+.+..+.+|+++. |..
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 2333444558899999999887 33444557899999999998766778888899999998654 332
Q ss_pred -EEEEeCCCC-eEE--EEEcCCEEEEEECCCcEEEee
Q 002389 895 -VGRISAGSK-ITS--LLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 895 -i~tl~~h~~-Vts--vs~dg~~LaSgs~DG~I~IWd 927 (929)
-..+...++ |.. +.+|+++++|+|+||+||||.
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence 122222222 444 668999999999999999975
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.3e-08 Score=111.94 Aligned_cols=187 Identities=16% Similarity=0.142 Sum_probs=128.5
Q ss_pred CeEEeccCCCEEEEEecCCeEEEEeCCCce---eeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccc
Q 002389 736 PIRKLDTYGKTIFASTQGHRMKVIDSSRTL---KDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPF 810 (929)
Q Consensus 736 ~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~---~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~ 810 (929)
.+.++.++|..+++++.||++++|++.... ....++..|.++.|+ ||+ +++.+.| ..++|+..+|....-+.|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 567889999999999999999999976432 233457789999998 887 6667777 999999999843322211
Q ss_pred cccccCCCCeEEEEEcCCc----eEEEEEecCCCeEEEEECCCCC-----eEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 811 KSWRLQSKPINSLVVYKDW----LYSASSSVEGSNIKEWRRHRKP-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 811 ~~~~~~~~~I~sl~~~~d~----i~~~s~S~dDgtI~IWDl~~~~-----~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
......+..+.+..+. .++++.....+.|+.||+.... .......-...|+++++++||++++.|+.|
T Consensus 226 ---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 ---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 1112334444554443 3344433345566666543211 111111223469999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEe-CCCC-eEEEEEc--CCEEEEEECCCcEEEee
Q 002389 882 SSLQIWLRGTQQKVGRIS-AGSK-ITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 882 G~I~IWdl~sg~~i~tl~-~h~~-Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
|.|-|++..+.+.++-.+ .|.. |+.+.|. .+.+++.+.|.++.|..
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 999999999988877665 4543 9998765 55888888887776643
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=7.2e-09 Score=116.16 Aligned_cols=172 Identities=13% Similarity=0.192 Sum_probs=115.6
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--ecc--CCCEEEEEecCCeEEEE
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT--YGKTIFASTQGHRMKVI 759 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~--~g~~L~sgs~Dg~V~IW 759 (929)
-.++.||++.|+|+.|+.+|.+|+|||+|-.+.|||.-..+.......+|...|.+ |-| +...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35678999999999999999999999999999999998766655555666666654 322 22345555555555555
Q ss_pred eCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 760 DSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 760 Dl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
|++.... .+.......+.+.|..|...+..++..|++...+-...+|
T Consensus 123 dl~~~~~---------------------------------~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED 169 (758)
T KOG1310|consen 123 DLDSSKE---------------------------------GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED 169 (758)
T ss_pred ecccccc---------------------------------cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC
Confidence 5431100 0112223334467777888888888888774333223389
Q ss_pred CeEEEEECCCCCeE----------EEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 002389 840 SNIKEWRRHRKPQI----------SIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 840 gtI~IWDl~~~~~i----------~~l~~h~~~V~slafSp-dg~~LaSgS~DG~I~IWd 888 (929)
|+|+-+|++..... ..+...--...++..+| +..+|+.|+.|-..++||
T Consensus 170 GtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 170 GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred cceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 99999998753211 11111123567888998 456889999999999999
No 223
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=4.3e-07 Score=104.06 Aligned_cols=255 Identities=15% Similarity=0.140 Sum_probs=159.0
Q ss_pred EEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCC
Q 002389 656 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE 735 (929)
Q Consensus 656 ~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~ 735 (929)
...++.++.++.||.+..+|..+++. +..... .+.+.+.... .+..++.++.||.+..||..+|+...........
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKE--LWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcE--eeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 34577889999999999999988864 333322 2222221111 3456777888999999999999865433221110
Q ss_pred C-e---EEeccCCCEEEEEecCCeEEEEeCCC-ceee-ec--cC---CC------e-EEEEEeCCEEEEEECCCcEEEEE
Q 002389 736 P-I---RKLDTYGKTIFASTQGHRMKVIDSSR-TLKD-IY--RS---KG------I-KSMSVVQGKIYIGCMDSSIQELA 797 (929)
Q Consensus 736 ~-V---~s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~-l~--~~---~~------V-~sla~sdg~llsgs~Dg~I~iwD 797 (929)
. . .+....+..++.+..++.+..+|... ...- .. .. .. + .+..+.++.+++++.+|.++.||
T Consensus 178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 0 0 01111235778888889999998752 2111 10 00 00 1 12233478899999999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLN 876 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~~V~slafSpdg~~La 876 (929)
..+|+.. |..............+.++..+ .+|.+..+|..+++.+-...... ....+... .+..++
T Consensus 258 ~~tG~~~--------W~~~~~~~~~p~~~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~ 324 (377)
T TIGR03300 258 LRSGRVL--------WKRDASSYQGPAVDDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV 324 (377)
T ss_pred CCCCcEE--------EeeccCCccCceEeCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEE
Confidence 9887542 2221111222233344444432 57899999999887664442211 11222222 466888
Q ss_pred EEeCCCcEEEEECCCCcEEEEEeCCC-CeEE-EEEcCCEEEEEECCCcEEEee
Q 002389 877 YNSSASSLQIWLRGTQQKVGRISAGS-KITS-LLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 877 SgS~DG~I~IWdl~sg~~i~tl~~h~-~Vts-vs~dg~~LaSgs~DG~I~IWd 927 (929)
+++.||.++++|..+|+.+.+++.+. .+.+ -...++.|+.++.||.|+.|.
T Consensus 325 ~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAFR 377 (377)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEeC
Confidence 99999999999999999999998775 3433 345566799999999998763
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=5.1e-08 Score=112.03 Aligned_cols=272 Identities=11% Similarity=0.077 Sum_probs=175.1
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCee-------------EEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM-------------LVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~-------------~i~~l~gH~~~Vtslafspdg~~LaSgs~D 712 (929)
......|+.|+ .|+++.||.||.++|-.+.+.... .-+++.||.+.|.-+.|+.+.+.|-|...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 46678899999 679999999999999988754321 235678999999999999999999999999
Q ss_pred CeEEEEEccCCeEEEEEEe-ccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeec--cCCCeEEEEEe-CCE-EE
Q 002389 713 KTIGVWQMVQRKLELIEVI-ATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY--RSKGIKSMSVV-QGK-IY 785 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~-~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~--~~~~V~sla~s-dg~-ll 785 (929)
|.|.||-+-.|.+...... ..++.|.+ |..+|..++.+-.||.|.+=.+++...--. .+.....+.|+ |.+ ++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 9999999988764322222 23344554 667899999999999888776653321111 12224456666 444 66
Q ss_pred EEECCCcEEEEEccCCccceecc-----cccccccCCCCeEEEEEc--------CC-ceEEEEEecCCCeEEEEECCCC-
Q 002389 786 IGCMDSSIQELAVSNNVEREIKA-----PFKSWRLQSKPINSLVVY--------KD-WLYSASSSVEGSNIKEWRRHRK- 850 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~-----~~~~~~~~~~~I~sl~~~--------~d-~i~~~s~S~dDgtI~IWDl~~~- 850 (929)
.+-..|.++++|...+-...... ....+......|..+.+. |+ ..+.+++ +.|.+.+....+.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy--~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY--ANGRMQIMRSENDP 250 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE--cCceehhhhhcCCC
Confidence 67778999999987643221110 000011111112222222 23 2334444 4667777654332
Q ss_pred CeEEEecCCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC--EEEEEE
Q 002389 851 PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---------SSLQIWLRGTQQKVGRISAGSK-ITSLLTAND--IVLCGT 918 (929)
Q Consensus 851 ~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---------G~I~IWdl~sg~~i~tl~~h~~-Vtsvs~dg~--~LaSgs 918 (929)
.++..- .+-.|....|+++|.+|+.+|.| +.|.+|. .-|+.+.+++..+. |++++|.|. .++. .
T Consensus 251 ~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~-A 326 (1189)
T KOG2041|consen 251 EPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAI-A 326 (1189)
T ss_pred CCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEE-E
Confidence 222222 23678899999999999998865 2455554 35778888887755 999999865 3332 2
Q ss_pred CCCcEEE
Q 002389 919 ETGLIKG 925 (929)
Q Consensus 919 ~DG~I~I 925 (929)
-|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 3555554
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.5e-07 Score=99.91 Aligned_cols=253 Identities=15% Similarity=0.091 Sum_probs=150.0
Q ss_pred CCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCC-e-e----------EEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 002389 647 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQS-A-M----------LVWDVKEHRKAVTSFSLFEPGESLLSGSA 711 (929)
Q Consensus 647 gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~-~-~----------~i~~l~gH~~~Vtslafspdg~~LaSgs~ 711 (929)
.-...|+|++|- ..-|+.|+..| |.||.....- . . .+..-+|| .+|+++.|.+||..+++++.
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 346789999997 33677777755 8899775311 0 0 12233566 68999999999999999885
Q ss_pred -CCeEEEEEccCCeEEEEEEeccCC-CeEEeccCCCEEEEEecCCeEEEEeCCC---ceeeeccCCCeEEEEEe-CCEEE
Q 002389 712 -DKTIGVWQMVQRKLELIEVIATKE-PIRKLDTYGKTIFASTQGHRMKVIDSSR---TLKDIYRSKGIKSMSVV-QGKIY 785 (929)
Q Consensus 712 -DgtIrIWDl~tg~~~~~~~~~h~~-~V~s~s~~g~~L~sgs~Dg~V~IWDl~~---~~~~l~~~~~V~sla~s-dg~ll 785 (929)
|..|.|||.++|........+..+ ....|+|+++++++++.|+..++|+..+ ..+.......|..-.|+ .|.++
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 678999999998865554332222 2457899999999999999999997653 23333345577777776 66622
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ 864 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~ 864 (929)
--...|.-.+|.+.. .... ......+ .-...-+-|+..-.......--.+.+.
T Consensus 296 Lf~~sgsp~lysl~f-------------------------~~~~~~~~~~~~-~k~~lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTF-------------------------DGEDSVFLRPQS-IKRVLLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred EEEEcCCceEEEEee-------------------------cCCCccccCccc-ceeeeeeccchhhhhhcCcccccCccc
Confidence 222222223333322 1110 0000000 001112223221111111111346788
Q ss_pred EEEEecCCCEEEEEeCCC--------cEEEEECCCCcEEEEEe-----CCCC-eEEEEEc---CCEEEEEECCCcEEEee
Q 002389 865 AMAVVEDFIYLNYNSSAS--------SLQIWLRGTQQKVGRIS-----AGSK-ITSLLTA---NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 865 slafSpdg~~LaSgS~DG--------~I~IWdl~sg~~i~tl~-----~h~~-Vtsvs~d---g~~LaSgs~DG~I~IWd 927 (929)
+++|.|.|.++|+.-..+ .|.+||....-.+.-.. +.++ ..++.|. +.+|..+=+.|.+.-|.
T Consensus 350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence 999999999999876554 36778866544433221 2222 3334332 56777777778777664
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=2.6e-07 Score=104.66 Aligned_cols=271 Identities=14% Similarity=0.147 Sum_probs=179.6
Q ss_pred CCCCCEEEEEEe-CC--EEEEEECCCeEEEEECCCCCeeEEEEeccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 647 KCSGAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--KAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~--~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
+|...-+.|..+ || .++||.+--.|++||+.... ..+..|. ..|.-.-.+.|-..++---.|++|-+-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce----eeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence 677888889998 55 58899999999999998764 3344454 34555555555555666667888766543
Q ss_pred CCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe--CCEEEEEECCCcEEEE
Q 002389 722 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQEL 796 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iw 796 (929)
-|.......+... .-.++..-.--++.++.+..|+-+++.+ -+..+.. ...++++.+. +|-+++|+.+|.|..|
T Consensus 124 ~G~hy~~RIP~~G-RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 124 YGRHYRTRIPKFG-RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred cCeeeeeecCcCC-ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 2332211111111 1112222233456666667777777762 3334443 3568888886 6778889999999999
Q ss_pred EccCCccce-ecccc----cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC--CCeEEEEEe
Q 002389 797 AVSNNVERE-IKAPF----KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG--TTIQAMAVV 869 (929)
Q Consensus 797 Dl~tg~~~~-i~~~~----~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~--~~V~slafS 869 (929)
|.+...... +.... .........|+++.|..+++.++.+. ..|.+.|||++...++.. ..|. -+|..+.|.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQ 280 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec-cCCcEEEEEcccCCceee-cccCCccceeeeccc
Confidence 998744321 11111 11112234589999999888776665 568999999998776543 3343 488999997
Q ss_pred cC--CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEEECCCcEEEe
Q 002389 870 ED--FIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCGTETGLIKGW 926 (929)
Q Consensus 870 pd--g~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs--~dg~~LaSgs~DG~I~IW 926 (929)
+. +..++|. ....++|||-.+|+....+.....++.++ +++.++++|-.++.+..|
T Consensus 281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 64 4566665 36789999999999999998777777665 567799999988877655
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.90 E-value=5.7e-06 Score=93.88 Aligned_cols=265 Identities=12% Similarity=0.160 Sum_probs=167.8
Q ss_pred EEEEECC----CeEEEEEC--CCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEccC--CeEEEEE
Q 002389 662 LCSGFSD----GSIKMWDI--KKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----DKTIGVWQMVQ--RKLELIE 729 (929)
Q Consensus 662 LaSGs~D----GtIrIWD~--~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~----DgtIrIWDl~t--g~~~~~~ 729 (929)
++.|+.+ +.|.+|++ .+++...+.... -......++++|++++|+++.. ++.|..|++.. +++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5566666 79999988 455444444432 3345667899999999988876 57899998876 4554333
Q ss_pred Eec--cCCCeE-EeccCCCEEEEEe-cCCeEEEEeCCC--ceee----ec-----------cCCCeEEEEEe-CCE-EEE
Q 002389 730 VIA--TKEPIR-KLDTYGKTIFAST-QGHRMKVIDSSR--TLKD----IY-----------RSKGIKSMSVV-QGK-IYI 786 (929)
Q Consensus 730 ~~~--h~~~V~-s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~~----l~-----------~~~~V~sla~s-dg~-lls 786 (929)
... ...+.. ++++++++++++. .+|.|.++++.. .+.. .. ......++.++ +|+ +++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 332 233333 5788999999887 478999999873 1111 11 12346788887 666 444
Q ss_pred EE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCe--EEEec----
Q 002389 787 GC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQ--ISIAP---- 857 (929)
Q Consensus 787 gs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~--~~~~--i~~l~---- 857 (929)
.. ....|.+|++......... ....-...+...+.+.++|++.++......+++|.+|+.. .+.. +....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 33 4567999998765421100 0011113366788999999988776666677899999977 4432 12111
Q ss_pred CC--CCCeEEEEEecCCCEEEEEe-CCCcEEEEECC--CCc--EEEEEeCCCC-eEEEEE--cCCEEEEEE-CCCcEEEe
Q 002389 858 EK--GTTIQAMAVVEDFIYLNYNS-SASSLQIWLRG--TQQ--KVGRISAGSK-ITSLLT--ANDIVLCGT-ETGLIKGW 926 (929)
Q Consensus 858 ~h--~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~--sg~--~i~tl~~h~~-Vtsvs~--dg~~LaSgs-~DG~I~IW 926 (929)
+. ......++++|||++|.++. .+++|.+|++. +|+ .+..+...+. .+.+++ +|++|+++. .++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 11 12578899999999986655 67889999983 343 3555555433 677766 688888776 56789988
Q ss_pred ec
Q 002389 927 IP 928 (929)
Q Consensus 927 di 928 (929)
++
T Consensus 320 ~~ 321 (345)
T PF10282_consen 320 DI 321 (345)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=5.6e-07 Score=104.28 Aligned_cols=207 Identities=11% Similarity=0.030 Sum_probs=123.3
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEeccCCCeEEeccCC
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 744 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g 744 (929)
...|.++|..+... ..+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++...............|++++
T Consensus 169 ~~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 34688888875542 4455677789999999999998876644 47999999887643322111111123467777
Q ss_pred CEEEEE-ecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEE
Q 002389 745 KTIFAS-TQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSL 823 (929)
Q Consensus 745 ~~L~sg-s~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl 823 (929)
+.++.. +.++ +..|++||+.++....+ ..+.......
T Consensus 246 ~~l~~~~~~~~-----------------------------------~~~i~~~d~~~~~~~~l-------~~~~~~~~~~ 283 (417)
T TIGR02800 246 SKLAVSLSKDG-----------------------------------NPDIYVMDLDGKQLTRL-------TNGPGIDTEP 283 (417)
T ss_pred CEEEEEECCCC-----------------------------------CccEEEEECCCCCEEEC-------CCCCCCCCCE
Confidence 665543 2222 12344445444332211 1111222334
Q ss_pred EEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCcEEEEE
Q 002389 824 VVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRI 898 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG---~I~IWdl~sg~~i~tl 898 (929)
.+++++..++..+..++ .|+++|..++... .+..+...+....|+|||++++.++.++ .|.+||+.++... .+
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l 361 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VL 361 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ec
Confidence 56677665544443333 6788888777643 3444556677889999999999888776 7899998876542 33
Q ss_pred eCCCCeE--EEEEcCCEEEEEECCC
Q 002389 899 SAGSKIT--SLLTANDIVLCGTETG 921 (929)
Q Consensus 899 ~~h~~Vt--svs~dg~~LaSgs~DG 921 (929)
..+.... +++++|++|+.++.++
T Consensus 362 ~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 362 TDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCCCCCCCceECCCCCEEEEEEeCC
Confidence 3222222 3566788777666654
No 229
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=8.7e-09 Score=128.15 Aligned_cols=207 Identities=15% Similarity=0.162 Sum_probs=143.8
Q ss_pred EECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--ecc
Q 002389 665 GFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT 742 (929)
Q Consensus 665 Gs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~ 742 (929)
...+++..-|..+... ..++.|-..|.++.-+|...+.+||+.||.|++|....++.++.........|+. |+.
T Consensus 2186 ~n~~~~~~tq~~~~~~----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGAS----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH 2261 (2439)
T ss_pred ccCCccccceecccce----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc
Confidence 3344555556655543 2234456778899989999999999999999999986655332222211122221 233
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEE
Q 002389 743 YGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS 822 (929)
Q Consensus 743 ~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~s 822 (929)
.|+. +-.+..||.+.+|.+.. .|...|+.|....+.
T Consensus 2262 qGnk-------------------------------------~~i~d~dg~l~l~q~~p-------k~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2262 QGNK-------------------------------------FGIVDGDGDLSLWQASP-------KPYTSWQCHNKALSD 2297 (2439)
T ss_pred cCCc-------------------------------------eeeeccCCceeecccCC-------cceeccccCCccccc
Confidence 3333 44445555555555541 233456667777777
Q ss_pred EEEcCCceEEEEEecCCCeEEEEECCC---CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 823 LVVYKDWLYSASSSVEGSNIKEWRRHR---KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 823 l~~~~d~i~~~s~S~dDgtI~IWDl~~---~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
+.|-...+....-+++++.+.+||... ..++. ..|.+.++++++-|..+.+++||.+|.|++||++..+.+++++
T Consensus 2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred eeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 777666666666778999999999532 22333 6799999999999999999999999999999998888877776
Q ss_pred CCCCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 900 AGSKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 900 ~h~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
. +. ...++++|+..|.|+||++
T Consensus 2376 ~------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2376 A------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred h------hh-hhheeeccCcccceEEEEc
Confidence 4 11 3669999999999999985
No 230
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.87 E-value=1.6e-07 Score=100.21 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=145.6
Q ss_pred cccccceecCCCcccceeEEEEEeecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEEC-CCCCeeEEEEeccCCCcEEE
Q 002389 620 LHKAADYYLPNISRISCVHTQILEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDI-KKQSAMLVWDVKEHRKAVTS 696 (929)
Q Consensus 620 ~~kv~~~~~~~~~~~~~~~t~~l~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~-~~~~~~~i~~l~gH~~~Vts 696 (929)
...+..|.......|...|++. .|...|++|+|+ .+.|++|+.|..-++|.. .+++.++.-.+..|...+++
T Consensus 31 ~~evhiy~~~~~~~w~~~htls-----~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLS-----EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATC 105 (361)
T ss_pred CceEEEEEecCCCCceeceehh-----hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceee
Confidence 3444444444444577788876 899999999999 559999999999999999 77777777788889999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCeEE---EEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCC-Cceeeecc
Q 002389 697 FSLFEPGESLLSGSADKTIGVWQMVQRKLE---LIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSS-RTLKDIYR 770 (929)
Q Consensus 697 lafspdg~~LaSgs~DgtIrIWDl~tg~~~---~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~~ 770 (929)
+.|+|.++.+++||.-+.|.||-.+..+-- ......++..|.+++ +++-.+++|+.|+..+++..- +....-.
T Consensus 106 V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp- 184 (361)
T KOG1523|consen 106 VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP- 184 (361)
T ss_pred EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC-
Confidence 999999999999999999999988654321 111224556677665 555588899999999999752 1110000
Q ss_pred CCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 002389 771 SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK 850 (929)
Q Consensus 771 ~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~ 850 (929)
......-.++-|.+ ...+...+..++.+.+++.+..++-.+ .|+++.+-|....
T Consensus 185 ap~pWgsk~PFG~l-------------------------m~E~~~~ggwvh~v~fs~sG~~lawv~-Hds~v~~~da~~p 238 (361)
T KOG1523|consen 185 APTPWGSKMPFGQL-------------------------MSEASSSGGWVHGVLFSPSGNRLAWVG-HDSTVSFVDAAGP 238 (361)
T ss_pred CCCCCccCCcHHHH-------------------------HHhhccCCCceeeeEeCCCCCEeeEec-CCCceEEeecCCC
Confidence 00000000000111 011223467788888888877655443 6778888886655
Q ss_pred C-eEEEecCCCCCeEEEEEecCC
Q 002389 851 P-QISIAPEKGTTIQAMAVVEDF 872 (929)
Q Consensus 851 ~-~i~~l~~h~~~V~slafSpdg 872 (929)
. .+.......-+..++.|-.+.
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred chhccchhhccCCceeeEeecCC
Confidence 3 233333333566677665443
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.3e-07 Score=103.21 Aligned_cols=230 Identities=10% Similarity=0.105 Sum_probs=161.1
Q ss_pred CCCcEEEEEEcCCCCE--EEEEeCCCeEEEEEccCCeEEEE-----EEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC
Q 002389 690 HRKAVTSFSLFEPGES--LLSGSADKTIGVWQMVQRKLELI-----EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 690 H~~~Vtslafspdg~~--LaSgs~DgtIrIWDl~tg~~~~~-----~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
-...|++++|.-+++. +..++.|..+....+..+.+... .......+|..+...+..++++..+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 3456788888766664 55555677777777665543222 2223445666677677789999999999999876
Q ss_pred ------CceeeeccCCCeEEEEEeCC---EEEEEECC--CcEEEEEccCCccceecccccccccC-----------CCCe
Q 002389 763 ------RTLKDIYRSKGIKSMSVVQG---KIYIGCMD--SSIQELAVSNNVEREIKAPFKSWRLQ-----------SKPI 820 (929)
Q Consensus 763 ------~~~~~l~~~~~V~sla~sdg---~llsgs~D--g~I~iwDl~tg~~~~i~~~~~~~~~~-----------~~~I 820 (929)
..+..+..+.++..+.-.++ .+++|+.. ..+.+||+.+++. +|... .-.+
T Consensus 134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--------iw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--------IWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred CCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee--------eeeccCCCCccccceeeeee
Confidence 22333344566666665522 25558888 8899999988632 22221 1123
Q ss_pred EEEEEcCC--ceEEEEEecCCCeEEEEECCCC-CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 002389 821 NSLVVYKD--WLYSASSSVEGSNIKEWRRHRK-PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR 897 (929)
Q Consensus 821 ~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~-~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~t 897 (929)
+.+.|-++ ....++.. .-+.+++||.+.+ +++..+.--..+|+++...|+|+++++|..-|.+..||.+.+.....
T Consensus 206 tdi~Fl~g~~~~~fat~T-~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATIT-RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ccceecCCCCCceEEEEe-cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 44555544 33334433 4468999998754 46667777788999999999999999999999999999999998776
Q ss_pred -EeCC-CCeEEEEEcC--CEEEEEECCCcEEEeec
Q 002389 898 -ISAG-SKITSLLTAN--DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 898 -l~~h-~~Vtsvs~dg--~~LaSgs~DG~I~IWdi 928 (929)
+.+- +.|+++..++ .+++++|-|..|||+|+
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 5544 5699988764 59999999999999986
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=1.1e-07 Score=114.40 Aligned_cols=260 Identities=16% Similarity=0.139 Sum_probs=171.6
Q ss_pred CCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCee----EEEEeccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 648 CSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAM----LVWDVKEHR--KAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 648 H~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~----~i~~l~gH~--~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
|-+++++..+-.++|..|+ .-.|.+||...+... ...-+..|. +.+. -.+.++++|+.-+.+..=+..
T Consensus 6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchh
Confidence 4455666666545555443 345889999876421 112223441 0010 123445666554444332222
Q ss_pred CCeEEEEEEeccCCCe--EEeccCCCEEEEEecCCeEEEEeCCCceee--eccCCCe--E-EEEE--eCC--EEEEEECC
Q 002389 722 QRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRTLKD--IYRSKGI--K-SMSV--VQG--KIYIGCMD 790 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V--~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~--l~~~~~V--~-sla~--sdg--~llsgs~D 790 (929)
.+.. ......+ ..+......++.++.++.+.+||....... +...... . ++-+ +.. .+++|+.-
T Consensus 80 ~~~~-----~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 80 NQII-----ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred hhhh-----hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1110 0011111 235567778999999999999998743222 2222221 1 1112 222 37789999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEe
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVV 869 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~-~l~~h~~~V~slafS 869 (929)
+.|.+|+... ... |. ...+|.+.+.++.++.++.+.+++| +|.++++|++++.+... ...+|+..|+.++|.
T Consensus 155 ~~iivW~~~~-dn~----p~-~l~GHeG~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 155 GEIIVWKPHE-DNK----PI-RLKGHEGSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccEEEEeccc-cCC----cc-eecccCCceEEEEEccCCcEEEEEe-cCcceeeeecccccccCcccccccceeEEEEec
Confidence 9999999873 211 11 3478999999999999999999998 99999999999988665 677999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 870 EDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 870 pdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~--~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+ .++|++.|.+.++|+. +++.+..+..|. .|+.++.+ .-..+|++.||.+++|+.
T Consensus 228 ~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 228 PN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 99 9999999999999965 445556888883 38887755 447889999999999984
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.2e-08 Score=109.57 Aligned_cols=202 Identities=14% Similarity=0.086 Sum_probs=139.5
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEE
Q 002389 700 FEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSV 779 (929)
Q Consensus 700 spdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~ 779 (929)
.|.+.++|....||.+++||..+++....+.+ +...+ ..++-..|.+.-.. ......+..+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-----~~~~s----------~t~~~~~w~L~~~~----s~~k~~~~~~ 62 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP-----IASLS----------GTCTYTKWGLSADY----SPMKWLSLEK 62 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc-----chhcc----------CcceeEEEEEEecc----chHHHHhHHH
Confidence 35567899999999999999998875332221 12222 22333344422000 0001111111
Q ss_pred ----eCCE--EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 002389 780 ----VQGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 780 ----sdg~--llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
+.+. ++-|...|.|.+|+...|+..... .-..|..++..+..+.+.-.+-+.+ .|+.+..|+...+..+
T Consensus 63 ~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~----st~~h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~~~~~~~~~ 137 (541)
T KOG4547|consen 63 AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL----STDKHYGNVNEILDAQRLGCIYSVG-ADLKVVYILEKEKVII 137 (541)
T ss_pred HhhccCCceEEEeecCCccEEEEEecCCeEEEEE----ecCCCCCcceeeecccccCceEecC-CceeEEEEecccceee
Confidence 2222 666888999999999988765442 1245778888888776644333333 6789999999999999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc-------CCEEE-EEECCCcEE
Q 002389 854 SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA-------NDIVL-CGTETGLIK 924 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d-------g~~La-Sgs~DG~I~ 924 (929)
.........+.+++++|||..++++| +.|++||+++++.+.+|.+| ++|++++|- |.++. +...+.-+.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 99988889999999999999999986 89999999999999999999 458887763 45444 455555677
Q ss_pred Eee
Q 002389 925 GWI 927 (929)
Q Consensus 925 IWd 927 (929)
+|-
T Consensus 216 ~w~ 218 (541)
T KOG4547|consen 216 VWV 218 (541)
T ss_pred EEE
Confidence 774
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=5.9e-07 Score=105.07 Aligned_cols=204 Identities=13% Similarity=0.028 Sum_probs=125.1
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecC---CeEEEEeCCCc-eeeecc-CCCeEEEEEe-CCE-
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQG---HRMKVIDSSRT-LKDIYR-SKGIKSMSVV-QGK- 783 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~D---g~V~IWDl~~~-~~~l~~-~~~V~sla~s-dg~- 783 (929)
.+|.+||...+.... ...+...+. .|+|+|+.++.++.+ ..|++||+... ...+.. .....+..|+ +|+
T Consensus 184 ~~l~i~D~~g~~~~~--lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYNPQT--ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCCceE--eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 468999986544322 223444554 578999999888743 47999998742 223322 2234467786 775
Q ss_pred EE-EEECCC--cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecC
Q 002389 784 IY-IGCMDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPE 858 (929)
Q Consensus 784 ll-sgs~Dg--~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~ 858 (929)
++ +.+.+| .|++||+.++....+ ..+........++|++..++..+..++ .|+++|..++.... +..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~l-------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~ 333 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRL-------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF 333 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEEC-------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec
Confidence 44 445555 599999988654332 122333456788999887665553444 46777777766433 223
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCCCCeE--EEEEcCCEEEEEECC-C--cEEEee
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRISAGSKIT--SLLTANDIVLCGTET-G--LIKGWI 927 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG---~I~IWdl~sg~~i~tl~~h~~Vt--svs~dg~~LaSgs~D-G--~I~IWd 927 (929)
+.......+|+|||++|+..+.++ .|.+||+.+++.. .+..+.... ++++||++++..+.+ | .|.+|+
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 334455789999999998765443 6999999887764 333222222 355668877665553 3 355554
No 235
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=3e-08 Score=104.70 Aligned_cols=266 Identities=15% Similarity=0.187 Sum_probs=162.8
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCC---eeEEEEeccCC------------CcEEEEEEcCCCCE--EEE
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS---AMLVWDVKEHR------------KAVTSFSLFEPGES--LLS 708 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~---~~~i~~l~gH~------------~~Vtslafspdg~~--LaS 708 (929)
..+.|++|.|. +.++++|...|.|.+|.-.... .+...++++|. ..|..+.|..++.+ ++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46789999998 6799999999999999776533 22344567775 35788888876654 666
Q ss_pred EeCCCeEEEEEccCCeEEEEEEe--------ccCCCeEE--------eccCCCEEEEEecCCeEEEEeCCCceeeeccCC
Q 002389 709 GSADKTIGVWQMVQRKLELIEVI--------ATKEPIRK--------LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK 772 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~--------~h~~~V~s--------~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~ 772 (929)
.+.|++|++|.+........... ...+++++ ++.+..+++ +.. .++| .-.+.-
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia-a~p---~rvy-------aNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA-AKP---CRVY-------ANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE-ecc---ceec-------ccccee
Confidence 67899999999976543222111 11223322 111222221 111 0111 001123
Q ss_pred CeEEEEEe-CCEEEEEECCCcEEEEEccCCcc--ceec-ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 773 GIKSMSVV-QGKIYIGCMDSSIQELAVSNNVE--REIK-APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 773 ~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~--~~i~-~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
.+.++++. |...+..+.|-.|.+|++.-... ..+. .| ..+..-...|++..+||........|...|+|++-|++
T Consensus 174 hiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 174 HINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred EeeeeeecCchheeeeccceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 47788887 55577777888899998764221 1110 11 01111134678888998876666666678999999987
Q ss_pred CCCeE----------------EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCC---------
Q 002389 849 RKPQI----------------SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAGS--------- 902 (929)
Q Consensus 849 ~~~~i----------------~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s-g~~i~tl~~h~--------- 902 (929)
...+. ..+.+-...|..+.|+++|+|+++-+ -.+|+|||.+. ..++.++..|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 43211 11112234688899999999999875 57899999765 45688887651
Q ss_pred ----CeEE---EEEcC--CEEEEEECCCcEEEe
Q 002389 903 ----KITS---LLTAN--DIVLCGTETGLIKGW 926 (929)
Q Consensus 903 ----~Vts---vs~dg--~~LaSgs~DG~I~IW 926 (929)
.|.. +.|+| +.+.+|+..+..-++
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeee
Confidence 2333 45553 477777776665554
No 236
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=2.2e-06 Score=98.21 Aligned_cols=260 Identities=11% Similarity=0.076 Sum_probs=160.4
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccC
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK 734 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~ 734 (929)
....++.++.++.+|.|..+|..+++. +....-......... .++..++.++.||.+..+|..+|+....... .
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~ 134 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKR--LWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL--S 134 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcE--eeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc--C
Confidence 344588999999999999999988864 444332222111222 2567788889999999999999986544332 2
Q ss_pred CCeEE-eccCCCEEEEEecCCeEEEEeCCC-ce-eeeccCCCe------EEEEEeCCEEEEEECCCcEEEEEccCCccce
Q 002389 735 EPIRK-LDTYGKTIFASTQGHRMKVIDSSR-TL-KDIYRSKGI------KSMSVVQGKIYIGCMDSSIQELAVSNNVERE 805 (929)
Q Consensus 735 ~~V~s-~s~~g~~L~sgs~Dg~V~IWDl~~-~~-~~l~~~~~V------~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~ 805 (929)
..+.+ ....++.++.++.++.+..||... .. -........ .+....++.++.+..++.+..+|..+|+..-
T Consensus 135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEee
Confidence 22221 122466788888899999999863 22 111111111 1223346788888899999999998876422
Q ss_pred ecccccccccCC------CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 806 IKAPFKSWRLQS------KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 806 i~~~~~~~~~~~------~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
.... ....+.. ....+...+.+.++..+ .++.++.||..+++.+...... . ..... .++..++.++
T Consensus 215 ~~~~-~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRV-ALPKGRTELERLVDVDGDPVVDGGQVYAVS---YQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTD 286 (377)
T ss_pred eecc-ccCCCCCchhhhhccCCccEEECCEEEEEE---cCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEEC
Confidence 1100 0000000 00011122334444433 4688999999988866544311 1 11122 2466777788
Q ss_pred CCCcEEEEECCCCcEEEEEeC-CCC-eEEEEEcCCEEEEEECCCcEEEeec
Q 002389 880 SASSLQIWLRGTQQKVGRISA-GSK-ITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~~-h~~-Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
.||.++.+|..+|+.+..... ... ..+....+..+++++.||.|++||.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 899999999999998766632 222 3334456889999999999999875
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.81 E-value=1.6e-05 Score=90.33 Aligned_cols=259 Identities=12% Similarity=0.152 Sum_probs=163.3
Q ss_pred CCEEEEEEe--CCEEEEEEC----CCeEEEEECCC--CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 002389 650 GAVTALIYY--KGLLCSGFS----DGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQM 720 (929)
Q Consensus 650 ~~Vtsl~fs--~~~LaSGs~----DGtIrIWD~~~--~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl 720 (929)
.....++++ +++|++... +|.|..|++.. ++...+............++++|++++|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 344557776 457777766 57999998876 45555555554455667899999999988776 5899999999
Q ss_pred cC-CeEEEEE-Eec-----------cCCCeE--EeccCCCEEEEEecC-CeEEEEeCCCce---e-----eeccCCCeEE
Q 002389 721 VQ-RKLELIE-VIA-----------TKEPIR--KLDTYGKTIFASTQG-HRMKVIDSSRTL---K-----DIYRSKGIKS 776 (929)
Q Consensus 721 ~t-g~~~~~~-~~~-----------h~~~V~--s~s~~g~~L~sgs~D-g~V~IWDl~~~~---~-----~l~~~~~V~s 776 (929)
.. |...... ... .....+ .++|+++++++.... ..|.+|+++... . ......+.+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 87 4433221 111 112233 368999988887643 489999987432 1 2234667889
Q ss_pred EEEe-CCE-EEE-EECCCcEEEEEcc--CCccceeccccccc--ccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 777 MSVV-QGK-IYI-GCMDSSIQELAVS--NNVEREIKAPFKSW--RLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 777 la~s-dg~-lls-gs~Dg~I~iwDl~--tg~~~~i~~~~~~~--~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
+.|+ +++ +++ .-.++.|.++++. ++....+... ... ... ......+.++|++.++.......++|.+|+++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 9998 665 444 4567889999998 4433222110 111 111 23677899999998877776677899999983
Q ss_pred --CCCe--EEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCcEEEEEe--CCCCeEEEEE
Q 002389 849 --RKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLR--GTQQKVGRIS--AGSKITSLLT 909 (929)
Q Consensus 849 --~~~~--i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl--~sg~~i~tl~--~h~~Vtsvs~ 909 (929)
++.+ +..........+.++++|+|++|+++. .++.|.+|++ .+|.+...-. .-....||.|
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3443 333333445689999999999998877 6679999975 5776533322 1233555554
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.7e-06 Score=98.39 Aligned_cols=265 Identities=11% Similarity=0.125 Sum_probs=159.3
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEE-----eCC-----CeEEE
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-----SAD-----KTIGV 717 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSg-----s~D-----gtIrI 717 (929)
..+++..+++ +|.++..+.++.++|++...... +.+... ..++++.|+|-|.+|.|= ..| -.+++
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKV--VLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcE--EEEecc--ceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 3446777787 77899999999999999998753 333322 278999999999987641 222 34679
Q ss_pred EEccCCeEEEEEEeccCC-CeEEeccCCC------------------------------------------EEEEE----
Q 002389 718 WQMVQRKLELIEVIATKE-PIRKLDTYGK------------------------------------------TIFAS---- 750 (929)
Q Consensus 718 WDl~tg~~~~~~~~~h~~-~V~s~s~~g~------------------------------------------~L~sg---- 750 (929)
|++.++............ ....|+.+.. .+++=
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 999885432111111111 1111222211 11110
Q ss_pred -ecCCeEEEEeCC--Cce-----eeeccCCCeEEEEEe-CCE--EEEEEC-----------CCcEEEEEccCCccceecc
Q 002389 751 -TQGHRMKVIDSS--RTL-----KDIYRSKGIKSMSVV-QGK--IYIGCM-----------DSSIQELAVSNNVEREIKA 808 (929)
Q Consensus 751 -s~Dg~V~IWDl~--~~~-----~~l~~~~~V~sla~s-dg~--llsgs~-----------Dg~I~iwDl~tg~~~~i~~ 808 (929)
+.-+.|++|... ... +++...+ -..+.|. .|. ++..+. ..+++++++. |....+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~- 266 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP- 266 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe-
Confidence 111244444433 100 0011111 1123333 222 221111 2345555555 2222221
Q ss_pred cccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcE
Q 002389 809 PFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSL 884 (929)
Q Consensus 809 ~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---G~I 884 (929)
....+||+++.+++++. +.+..+..-..+.|||++...+... ..++=+++-|+|.|++++.+|.+ |.|
T Consensus 267 -----L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 267 -----LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred -----cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCce
Confidence 12378999999998864 5555555556899999987764433 34556788999999999888865 899
Q ss_pred EEEECCCCcEEEEEeCCCC-eEEEEEcCCEEEEEEC------CCcEEEeec
Q 002389 885 QIWLRGTQQKVGRISAGSK-ITSLLTANDIVLCGTE------TGLIKGWIP 928 (929)
Q Consensus 885 ~IWdl~sg~~i~tl~~h~~-Vtsvs~dg~~LaSgs~------DG~I~IWdi 928 (929)
-|||+.+.+++.++...+. +..+++||++|+|++. |+.++||+.
T Consensus 339 EvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9999999999999998755 5568889999998876 577899963
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=2.1e-06 Score=100.30 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=136.0
Q ss_pred eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEeccCCCeEEeccCCCE
Q 002389 670 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 746 (929)
Q Consensus 670 tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~ 746 (929)
.|.++|.++... +.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++............-..|+|+|+.
T Consensus 180 ~l~~~d~~g~~~---~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA---VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc---eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 477888886642 4455677889999999999998766543 3689999988865432221111122468999998
Q ss_pred EEE-EecCC--eEEEEeCCC-ceeeeccCC-CeEEEEEe-CCE-EEEEE-CCC--cEEEEEccCCccceecccccccccC
Q 002389 747 IFA-STQGH--RMKVIDSSR-TLKDIYRSK-GIKSMSVV-QGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 747 L~s-gs~Dg--~V~IWDl~~-~~~~l~~~~-~V~sla~s-dg~-llsgs-~Dg--~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
++. .+.+| .|++||+.. ....+.... ......|+ +|+ ++..+ .+| .|+++|+.++....+. ..
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-------~~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-------FV 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-------cC
Confidence 874 44444 688888873 333333322 24456676 665 55544 333 5777777766543321 11
Q ss_pred CCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCC
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGT 891 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---G~I~IWdl~s 891 (929)
........++|++..++..+..++ .|.+||+.++.... +.. ........|+|||++++..+.+ ..+++++..
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 122234567788776655443333 58889988876433 222 2222356899999999876643 346666764
Q ss_pred CcEEEEEeCC-CCeEEEEEc
Q 002389 892 QQKVGRISAG-SKITSLLTA 910 (929)
Q Consensus 892 g~~i~tl~~h-~~Vtsvs~d 910 (929)
|.....+..+ +.+...+|+
T Consensus 407 g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 407 GRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred CCceEECcCCCCCcCCCccC
Confidence 3344444433 335555554
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=8e-07 Score=103.83 Aligned_cols=212 Identities=8% Similarity=0.033 Sum_probs=133.1
Q ss_pred CCCCCEEEEEEe-CC-EEEEEE---CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGF---SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADK--TIGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs---~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSg-s~Dg--tIrIW 718 (929)
.+.+.+.+.+|+ ++ .|+..+ .+..|.+||+.+++...+..+.+| +....|+|||+.|+.. +.+| .|.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 356789999999 44 566443 345799999998865444444444 4567999999987754 4455 58899
Q ss_pred EccCCeEEEEEEeccCCCeEEeccCCCEEEEEecC-C--eEEEEeCCC-ceeeecc-CCCeEEEEEe-CCE-EEEEEC-C
Q 002389 719 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG-H--RMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK-IYIGCM-D 790 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~D-g--~V~IWDl~~-~~~~l~~-~~~V~sla~s-dg~-llsgs~-D 790 (929)
|+.+++............-..|+|+|+.++.++.+ + .|+.+|..+ ....+.. ........|+ +|+ ++..+. +
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 99888653322111111223689999988877754 4 444456553 3333322 2334566776 676 544443 2
Q ss_pred --CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEE
Q 002389 791 --SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAM 866 (929)
Q Consensus 791 --g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~sl 866 (929)
..+.+||+.++....+.. ........++|++..++..+.+++ .+.+++.+++. ...+.+|.+.+...
T Consensus 353 g~~~I~~~dl~~g~~~~Lt~--------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p 423 (429)
T PRK03629 353 GQQHIAKQDLATGGVQVLTD--------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFP 423 (429)
T ss_pred CCceEEEEECCCCCeEEeCC--------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCc
Confidence 358889998876443321 111234568899888776664443 46777885554 55667788888889
Q ss_pred EEec
Q 002389 867 AVVE 870 (929)
Q Consensus 867 afSp 870 (929)
+|+|
T Consensus 424 ~Wsp 427 (429)
T PRK03629 424 AWSP 427 (429)
T ss_pred ccCC
Confidence 9987
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.79 E-value=1.4e-05 Score=89.90 Aligned_cols=253 Identities=10% Similarity=0.044 Sum_probs=151.1
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEEccCCeEEEEEEeccCC---
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----------DKTIGVWQMVQRKLELIEVIATKE--- 735 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~----------DgtIrIWDl~tg~~~~~~~~~h~~--- 735 (929)
++|.+.|..+.+. +.++..-..+- .+ ++|||+.|+.+.. +..|.+||..+.+.......+.+.
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 8899999998753 55564433333 24 9999999776654 789999999998876555543331
Q ss_pred -----CeEEeccCCCEEEEEe-c-CCeEEEEeCCC--ceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCcccee
Q 002389 736 -----PIRKLDTYGKTIFAST-Q-GHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREI 806 (929)
Q Consensus 736 -----~V~s~s~~g~~L~sgs-~-Dg~V~IWDl~~--~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i 806 (929)
....++++|+++++.. . ++.|.+.|+.. ....+.......-+..+++...+-|.||......+.+......
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 2457899999998776 3 68999999873 2222332222222222233334445566555544332111111
Q ss_pred cccccccccCCCCeEEE-EEcC-CceEEEEEecCCCeEEEEECCCC-----CeEEEecC-------CCCCeEEEEEecCC
Q 002389 807 KAPFKSWRLQSKPINSL-VVYK-DWLYSASSSVEGSNIKEWRRHRK-----PQISIAPE-------KGTTIQAMAVVEDF 872 (929)
Q Consensus 807 ~~~~~~~~~~~~~I~sl-~~~~-d~i~~~s~S~dDgtI~IWDl~~~-----~~i~~l~~-------h~~~V~slafSpdg 872 (929)
.....+.....++..- .+.+ ++.+..... + |+|.+.|+... .....+.. ..+.+.-++++|++
T Consensus 183 -~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 183 -KPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred -eeeeeecCCccccccCCceEcCCCcEEEEec-C-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 1111111111111100 1122 444433222 3 89999995433 22222211 22334459999999
Q ss_pred CEEEEEe----------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEE-CCCcEEEeec
Q 002389 873 IYLNYNS----------SASSLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 873 ~~LaSgS----------~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~-~LaSgs-~DG~I~IWdi 928 (929)
+.+.... ..+.|.++|..+++.+..+..+..+..++++ ++ .|++.. .++.|.+.|.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 9887742 2257999999999999999988888887765 67 776555 5788999885
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=2.1e-07 Score=100.51 Aligned_cols=192 Identities=11% Similarity=0.096 Sum_probs=124.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeec
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY 769 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~ 769 (929)
-.+..++|++.-..++++..|-+|++||-.. ++.+.........|.+ |.|.+...++.+-.+.|.+|..+.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~-- 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-- 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc--
Confidence 3467788988555689999999999999765 3333333333344554 4454443334444455777765422110
Q ss_pred cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 002389 770 RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 849 (929)
Q Consensus 770 ~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~ 849 (929)
++.+.+...+...+.. ..+ ..+|++++..+|+...++.++++..|.|||.++
T Consensus 176 ------------~r~~~~~s~~~~qvl~---------------~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 176 ------------NRNIRMMSTHHLQVLQ---------------DPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred ------------ccccccccccchhhee---------------CCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCC
Confidence 0000011111111110 112 478999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-CCCCcEEEEEeCCCCeEEEEEc--CCEE
Q 002389 850 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL-RGTQQKVGRISAGSKITSLLTA--NDIV 914 (929)
Q Consensus 850 ~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd-l~sg~~i~tl~~h~~Vtsvs~d--g~~L 914 (929)
+..+.......+.++-+.|||||.++.+++-|+..++|+ -++.....-.-+.+.|..-.|+ |.+|
T Consensus 228 g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 886665544556788999999999999999999999995 4455555444455567776665 5543
No 243
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=6.7e-09 Score=114.79 Aligned_cols=181 Identities=8% Similarity=0.095 Sum_probs=151.9
Q ss_pred EeccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceeccccccccc
Q 002389 739 KLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 815 (929)
Q Consensus 739 s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~ 815 (929)
.++.+|.+++.|+.-|.+-.+|+.. ....+.-...|.++.|- +.++++......+++||-..-+...++
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk-------- 207 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK-------- 207 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh--------
Confidence 4678899999999999999999873 33344456778888885 667888888999999998764444442
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
....+..+.|-|...++++.+ +.|.++.-|..+|+++..+....+.+..+.-+|-...+-+|...|+|.+|.....+++
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~-~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAAS-EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcCchhhhcccchhheeeecc-cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 245677788888877777766 6789999999999999888888888999999999999999999999999999999998
Q ss_pred EEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 896 GRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 896 ~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
..+-.| ++|.+++++ |++++|.|-|..++|||+
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 888888 679999987 889999999999999996
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.73 E-value=6.7e-07 Score=95.48 Aligned_cols=261 Identities=10% Similarity=0.032 Sum_probs=161.9
Q ss_pred EEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEe
Q 002389 655 LIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 655 l~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~ 731 (929)
.+|+ ++++|+++.- .+.|-|..+-+. .+.+ ..-+.|.-+.|..|.-+ |.....|+.|.+|++...+..+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhH--HHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 3455 5688888765 777888876542 1111 22356778889988877 45567788999999998877666555
Q ss_pred ccCCCeE-EeccCCCEEE-EEecCCeEEEEeCCCceeeec--cCCCeEEEEEe-CCEEEEEEC-----------------
Q 002389 732 ATKEPIR-KLDTYGKTIF-ASTQGHRMKVIDSSRTLKDIY--RSKGIKSMSVV-QGKIYIGCM----------------- 789 (929)
Q Consensus 732 ~h~~~V~-s~s~~g~~L~-sgs~Dg~V~IWDl~~~~~~l~--~~~~V~sla~s-dg~llsgs~----------------- 789 (929)
+..+-.. +++|+|+.++ +...+-.|.+|.+........ ....++.++|+ +|++.+-..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 5444333 5899997555 556788999999985443332 24567888887 888655332
Q ss_pred --------------------CCcEEEEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 790 --------------------DSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 790 --------------------Dg~I~iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
+..+.+||-.-.- +++..+ +-.+..+.++|.+.+.+.++ .|+.+++.+.-
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--------kv~aYe~~lG~k~v~wsP~~qflavGs-yD~~lrvlnh~ 240 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--------KVYAYERGLGLKFVEWSPCNQFLAVGS-YDQMLRVLNHF 240 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhh--------eeeeeeeccceeEEEeccccceEEeec-cchhhhhhcee
Confidence 2233444432100 111111 24456667777555554444 23333332210
Q ss_pred CCC------------------------------------------------------------eEEEec------CCCCC
Q 002389 849 RKP------------------------------------------------------------QISIAP------EKGTT 862 (929)
Q Consensus 849 ~~~------------------------------------------------------------~i~~l~------~h~~~ 862 (929)
+.+ .+..++ .....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 000 011111 11235
Q ss_pred eEEEEEecCCCEEEEEeCC--CcEEEEECCCCcEEEEEeCCCCeEEEEEcCC--EEEEEECCCcEEEeec
Q 002389 863 IQAMAVVEDFIYLNYNSSA--SSLQIWLRGTQQKVGRISAGSKITSLLTAND--IVLCGTETGLIKGWIP 928 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~D--G~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~--~LaSgs~DG~I~IWdi 928 (929)
+.-++|++|..|++|-.+. +.+-+||+++.+....+...++|+.+.||+. .|+.+....++++|.+
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 6779999999999987633 6799999998888777777788999999943 5555555567999965
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.72 E-value=6.2e-07 Score=96.46 Aligned_cols=240 Identities=10% Similarity=0.102 Sum_probs=156.2
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECC-CCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~-~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.||.+.|+....- ..-+++.+.|.++|||--. .++.-+ ........+++++.+.+....|+.|-..|++.-+.+..
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence 3888888887665 4579999999999999543 333211 11123467899999999999999999999998887643
Q ss_pred C--e-EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--CceeeeccCCCeEEEEEeCCEEEEEECCCcEEE
Q 002389 723 R--K-LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQE 795 (929)
Q Consensus 723 g--~-~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~i 795 (929)
. + ........|...+.. ++-....+++.+.|..+.---.+ ..+..+.....-.++.+.-+..+.|...|.|..
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~ 179 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM 179 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence 1 1 112223356666665 45556678888877655322111 111111000001111111113334555666665
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIY 874 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpdg~~ 874 (929)
..+.......+ ..+.+|..++.++.+.+....+.+.. .|..+.+||+-.++ ....+.+|...|..+..-+--+.
T Consensus 180 lr~~~~~~~~i----~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 180 LKLEQNGCQLI----TTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred EEEeecCCceE----EEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 55544332222 44577888999999988877777665 67899999986554 35577899999999999888999
Q ss_pred EEEEeCCCcEEEEECCC
Q 002389 875 LNYNSSASSLQIWLRGT 891 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~s 891 (929)
+.+++.||.|.+|+.+.
T Consensus 255 l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeccCCCeEEEEeccc
Confidence 99999999999998653
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=4.5e-06 Score=98.10 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=135.4
Q ss_pred eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEEccCCeEEEEEEeccCCCeEEeccCCCE
Q 002389 670 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-K--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 746 (929)
Q Consensus 670 tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-g--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~ 746 (929)
.|.++|..+... +.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++............-..|+++|+.
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 677778876543 3444567789999999999998766543 2 588899988764333222111122468999998
Q ss_pred EEEE-ecCC--eEEEEeCCC-ceeeeccC-CCeEEEEEe-CCE-EEEEE-CCC--cEEEEEccCCccceecccccccccC
Q 002389 747 IFAS-TQGH--RMKVIDSSR-TLKDIYRS-KGIKSMSVV-QGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 747 L~sg-s~Dg--~V~IWDl~~-~~~~l~~~-~~V~sla~s-dg~-llsgs-~Dg--~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
++.. +.++ .|++||+.. ....+..+ .......|+ ||+ ++..+ .++ .|+++|+.+++...+. +.
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-----~~-- 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-----FE-- 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-----cC--
Confidence 7654 5556 477778763 33333332 234567776 666 54443 334 4666677666543321 11
Q ss_pred CCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCC
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-S--SLQIWLRGT 891 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D-G--~I~IWdl~s 891 (929)
........++|++.+++..+..++ .|.++|+.++.... +... .......|+|||++|+..+.+ | .+++++. +
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 122234567888776654443344 56667888776433 3222 122345799999988766543 3 3667776 5
Q ss_pred CcEEEEEeCC-CCeEEEEEcC
Q 002389 892 QQKVGRISAG-SKITSLLTAN 911 (929)
Q Consensus 892 g~~i~tl~~h-~~Vtsvs~dg 911 (929)
|.....+..+ +.+...+|++
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 6666666554 3355555553
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.71 E-value=1.1e-06 Score=91.33 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=81.7
Q ss_pred CeEEEEEe-CCE-EE--EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC--CCeEEEEE
Q 002389 773 GIKSMSVV-QGK-IY--IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE--GSNIKEWR 846 (929)
Q Consensus 773 ~V~sla~s-dg~-ll--sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d--DgtI~IWD 846 (929)
.|.+++|+ +|. ++ .|..++.+.+||+..... ...+...++.+.++|++.+++..+.. .|.+.+||
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i---------~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKI---------FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEe---------EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 47777775 443 33 244567888888863211 12235677889999999887765532 46899999
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEEEEe
Q 002389 847 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 847 l~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~------DG~I~IWdl~sg~~i~tl~ 899 (929)
.++.+.+.... ...++.++|+|||+++++++. |+.++||+. .|+.+....
T Consensus 132 ~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 132 VRKKKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred CCCCEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 99888776653 335789999999999998874 788999998 466665543
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.68 E-value=8.6e-06 Score=93.08 Aligned_cols=245 Identities=11% Similarity=0.082 Sum_probs=139.5
Q ss_pred EEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEEccCCeEEEEE
Q 002389 653 TALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADKTIGVWQMVQRKLELIE 729 (929)
Q Consensus 653 tsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSg-s~DgtIrIWDl~tg~~~~~~ 729 (929)
..+.|+ | .++++++.||.|.++|+.+.+. +.+++... ...++++++||++++++ ..++.+.++|..+.+.....
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV--VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE--EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE--EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 345677 3 4888889999999999999863 67775544 46789999999997755 57899999999987754433
Q ss_pred Eec------cCCCeEEe--ccCCC-EEEEEecCCeEEEEeCCCc--e--eeeccCCCeEEEEEe-CCE-EEE-EECCCcE
Q 002389 730 VIA------TKEPIRKL--DTYGK-TIFASTQGHRMKVIDSSRT--L--KDIYRSKGIKSMSVV-QGK-IYI-GCMDSSI 793 (929)
Q Consensus 730 ~~~------h~~~V~s~--s~~g~-~L~sgs~Dg~V~IWDl~~~--~--~~l~~~~~V~sla~s-dg~-lls-gs~Dg~I 793 (929)
..+ ....+.++ ++... ++++.-..+.|.+.|.... . ..+..........++ +++ +++ ...++.+
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 221 11234443 34445 3444444577877786532 1 222234456666666 554 333 3345566
Q ss_pred EEEEccCCccceecc----c-----------c--ccc--------------------------------ccCCCCeEEEE
Q 002389 794 QELAVSNNVEREIKA----P-----------F--KSW--------------------------------RLQSKPINSLV 824 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~----~-----------~--~~~--------------------------------~~~~~~I~sl~ 824 (929)
.++|..+++...... + . ..| ...+.+ .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 666665543221100 0 0 001 011222 3455
Q ss_pred EcCCceEEEEE---ecCCCeEEEEECCCCCeEEEecC-CCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCcEEEEE
Q 002389 825 VYKDWLYSASS---SVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVEDFIYLNYNSS--ASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 825 ~~~d~i~~~s~---S~dDgtI~IWDl~~~~~i~~l~~-h~~~V~slafSpdg~~LaSgS~--DG~I~IWdl~sg~~i~tl 898 (929)
.||+..++... +++.++|.++|.++.+....+.. ....+..+.|++||+++..+.. +|.|.|||..+.+.+.++
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 56776666554 45668999999999877766643 2335899999999997755443 347999999999999998
Q ss_pred eCC
Q 002389 899 SAG 901 (929)
Q Consensus 899 ~~h 901 (929)
...
T Consensus 356 ~~~ 358 (369)
T PF02239_consen 356 PVP 358 (369)
T ss_dssp E--
T ss_pred Eee
Confidence 844
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=3.1e-06 Score=99.15 Aligned_cols=209 Identities=10% Similarity=-0.029 Sum_probs=130.9
Q ss_pred CCCCCEEEEEEe-CC-EEEEEEC---CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCe--EEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKT--IGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~---DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~Dgt--IrIW 718 (929)
.|.+.|.+.+|+ |+ .|+..+. +..|.+||+.+++. ..+..+.+.+.+.+|+|||+.|+ +.+.++. |.+|
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM 275 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEE
Confidence 577899999999 44 6666553 46899999998764 34445667788899999999865 5666665 7777
Q ss_pred EccCCeEEEEEEeccCCCe--EEeccCCCEEEEEec-CC--eEEEEeCCC-ceeeecc-CCCeEEEEEe-CCE-EEEEEC
Q 002389 719 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQ-GH--RMKVIDSSR-TLKDIYR-SKGIKSMSVV-QGK-IYIGCM 789 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V--~s~s~~g~~L~sgs~-Dg--~V~IWDl~~-~~~~l~~-~~~V~sla~s-dg~-llsgs~ 789 (929)
|+.++..... ..+.... ..|+++|+.++.++. +| .|++||..+ ....+.. ...+....|+ +|+ ++..+.
T Consensus 276 d~~~~~~~~L--t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 276 DLRSGTTTRL--TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred ECCCCceEEc--cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEc
Confidence 8887764322 2222222 368999998888764 33 688888764 3333332 3345566776 666 544443
Q ss_pred C---CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC-----CeEEEEECCCCCeEEEecCCCC
Q 002389 790 D---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG-----SNIKEWRRHRKPQISIAPEKGT 861 (929)
Q Consensus 790 D---g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD-----gtI~IWDl~~~~~i~~l~~h~~ 861 (929)
+ ..|.+||..++....+. ....+....++|++..++..+.++ ..+.++|+.++... .+. ...
T Consensus 354 ~~~~~~i~~~d~~~~~~~~lt--------~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~ 423 (435)
T PRK05137 354 GGGQFSIGVMKPDGSGERILT--------SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPG 423 (435)
T ss_pred CCCceEEEEEECCCCceEecc--------CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCC
Confidence 2 35788887654432221 122345677888877655433222 35778888776543 333 233
Q ss_pred CeEEEEEec
Q 002389 862 TIQAMAVVE 870 (929)
Q Consensus 862 ~V~slafSp 870 (929)
.+...+|+|
T Consensus 424 ~~~~p~Wsp 432 (435)
T PRK05137 424 DASDPAWSP 432 (435)
T ss_pred CccCcccCC
Confidence 466667765
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=1.7e-06 Score=101.13 Aligned_cols=210 Identities=10% Similarity=0.065 Sum_probs=127.3
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECC---CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEc
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQM 720 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~D---GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl 720 (929)
.|.+.+.+.+|+ ++ .|+..+.+ ..|.+||+.+++...+ ....+.+.+..|+|||+.|+ +.+.+|...||.+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 467789999999 44 67666543 4699999998865333 33345567889999999876 5677887777754
Q ss_pred --cCCeEEEEEEeccCCC--eEEeccCCCEEEEEec-CCeEEEEeC--CC-ceeeec-cCCCeEEEEEe-CCE-EEEEEC
Q 002389 721 --VQRKLELIEVIATKEP--IRKLDTYGKTIFASTQ-GHRMKVIDS--SR-TLKDIY-RSKGIKSMSVV-QGK-IYIGCM 789 (929)
Q Consensus 721 --~tg~~~~~~~~~h~~~--V~s~s~~g~~L~sgs~-Dg~V~IWDl--~~-~~~~l~-~~~~V~sla~s-dg~-llsgs~ 789 (929)
.++... ....+... -..|+++|+.++.++. +|...+|.+ .+ ....+. .........|+ +|+ ++..+.
T Consensus 270 d~~~~~~~--~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSGLR--RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCCcE--ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 444322 22222221 2358999998887664 455566654 32 222222 22223456676 776 554444
Q ss_pred CC---cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeE
Q 002389 790 DS---SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQ 864 (929)
Q Consensus 790 Dg---~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~ 864 (929)
++ .|.+||+.++....+. . ........++|++..++..+.+++ .+.+.+.. +.....+..+.+.+.
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt------~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALT------D--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVR 418 (427)
T ss_pred cCCcEEEEEEECCCCCeEEcc------C--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCC
Confidence 33 6999999887644331 1 112345678888877665553443 35555664 444555555666777
Q ss_pred EEEEec
Q 002389 865 AMAVVE 870 (929)
Q Consensus 865 slafSp 870 (929)
..+|+|
T Consensus 419 ~p~wsp 424 (427)
T PRK02889 419 EPSWGP 424 (427)
T ss_pred CCccCC
Confidence 778876
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.4e-06 Score=97.82 Aligned_cols=219 Identities=13% Similarity=0.157 Sum_probs=135.3
Q ss_pred CEEEEEECCCeEEEEECCCCCeeEEEEec---cCCCcEEEEEEc------C--------------CCCEEEEEeCCCeEE
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLF------E--------------PGESLLSGSADKTIG 716 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~~i~~l~---gH~~~Vtslafs------p--------------dg~~LaSgs~DgtIr 716 (929)
.++|....||.+||||...++. .+.+. .-++..++..|. | |...++-|...|.|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred heEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3899999999999999998753 23331 112334444442 1 111244444444454
Q ss_pred EEEccCCeEEEEEE-eccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe--CCEEEEEECCCcE
Q 002389 717 VWQMVQRKLELIEV-IATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGKIYIGCMDSSI 793 (929)
Q Consensus 717 IWDl~tg~~~~~~~-~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s--dg~llsgs~Dg~I 793 (929)
+|++..|+...... ..|. .+|.++.++ -+.+++++.|+.+
T Consensus 84 ~ys~~~g~it~~~st~~h~-------------------------------------~~v~~~~~~~~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHY-------------------------------------GNVNEILDAQRLGCIYSVGADLKV 126 (541)
T ss_pred EEEecCCeEEEEEecCCCC-------------------------------------CcceeeecccccCceEecCCceeE
Confidence 55444444322211 1222 335555554 2447777788888
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC--
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED-- 871 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd-- 871 (929)
..|+...+... +.|......+.++...||+..++..+ +.|++||+++++.+..+.||.++|+++.|..+
T Consensus 127 ~~~~~~~~~~~------~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 127 VYILEKEKVII------RIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred EEEecccceee------eeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 88887764332 55677788889999999988877664 78999999999999999999999999999876
Q ss_pred ---CCEEEEEe-CCCcEEEEECCC----CcEEEEEeCCC-CeEEEE---EcC---CEEEEEECCCcEEEe
Q 002389 872 ---FIYLNYNS-SASSLQIWLRGT----QQKVGRISAGS-KITSLL---TAN---DIVLCGTETGLIKGW 926 (929)
Q Consensus 872 ---g~~LaSgS-~DG~I~IWdl~s----g~~i~tl~~h~-~Vtsvs---~dg---~~LaSgs~DG~I~IW 926 (929)
|.++.++. .+..|.+|-+.. +.....+...+ +|+.=. -++ -.+++...+|.+..+
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~ 267 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLK 267 (541)
T ss_pred ccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccCceeeec
Confidence 66766543 556678886443 23344454432 233211 122 245555556655543
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=1.5e-07 Score=113.13 Aligned_cols=138 Identities=19% Similarity=0.223 Sum_probs=113.7
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL 740 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~ 740 (929)
++++|+.-|.|.+|+....+ .+. .+.||.+.|.++.|+.||.+++|.|+|+++|+|++++++.......+|...+...
T Consensus 147 ~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEeccccccEEEEeccccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 89999999999999998443 223 5789999999999999999999999999999999999876554566888888765
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCce-eeecc--CCCeEEEEEeCCE--EEEEECCCcEEEEEccC
Q 002389 741 DTYGKTIFASTQGHRMKVIDSSRTL-KDIYR--SKGIKSMSVVQGK--IYIGCMDSSIQELAVSN 800 (929)
Q Consensus 741 s~~g~~L~sgs~Dg~V~IWDl~~~~-~~l~~--~~~V~sla~sdg~--llsgs~Dg~I~iwDl~t 800 (929)
....+.+++++.|-+.++|+.+... ..+.. .+.++.++.+.+. .++++.|+.+++||+..
T Consensus 225 ~~~~n~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLPNRIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 5555599999999999999887433 33333 4569999998444 78899999999999854
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.62 E-value=1.9e-06 Score=89.63 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=82.5
Q ss_pred CCCeEEEEEcCCceEEE-EEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCC
Q 002389 817 SKPINSLVVYKDWLYSA-SSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQ 892 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~-s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---G~I~IWdl~sg 892 (929)
..+|..++++|++...+ ..+..++.|.+||.+ +..+..+ +...++.+.|+|+|+++++|+.+ |.|.+||.++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 45799999999876543 333345689999997 4444445 35678899999999999998754 67999999999
Q ss_pred cEEEEEeCCCCeEEEEEc--CCEEEEEEC------CCcEEEeec
Q 002389 893 QKVGRISAGSKITSLLTA--NDIVLCGTE------TGLIKGWIP 928 (929)
Q Consensus 893 ~~i~tl~~h~~Vtsvs~d--g~~LaSgs~------DG~I~IWdi 928 (929)
+.+.+.... .++.++|+ |+++++++. |+.++||+.
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 998887643 46666665 889988775 788999974
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.62 E-value=4.8e-07 Score=95.57 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=113.0
Q ss_pred EEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcc-CCeEEEE
Q 002389 653 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMV-QRKLELI 728 (929)
Q Consensus 653 tsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrIWDl~-tg~~~~~ 728 (929)
.++.|+ +..++++-++|.+.+-+......+.++++++|.-+.+...|+.... .++|||+|+.+..||++ .++....
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 355665 4479999999999977766665556778999999999999986554 58899999999999999 4444444
Q ss_pred EEeccCCCeEEec---cCCCEEEEEecCCeEEEEeCCCceeeecc---CCCeEEEEEe---CCEEEEEECCCcEEEEEcc
Q 002389 729 EVIATKEPIRKLD---TYGKTIFASTQGHRMKVIDSSRTLKDIYR---SKGIKSMSVV---QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 729 ~~~~h~~~V~s~s---~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~---~~~V~sla~s---dg~llsgs~Dg~I~iwDl~ 799 (929)
....|...|.++. +.+.++++|+.|..|++||.+...+.+.. .++|+.+..+ .+.+++++.-.-.++.+..
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 4556778888874 45669999999999999999854444443 5779988886 4446666666666777776
Q ss_pred CCc
Q 002389 800 NNV 802 (929)
Q Consensus 800 tg~ 802 (929)
.+.
T Consensus 285 ~~~ 287 (339)
T KOG0280|consen 285 DKV 287 (339)
T ss_pred ccc
Confidence 644
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=117.65 Aligned_cols=222 Identities=9% Similarity=0.107 Sum_probs=149.4
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
|-..|.++.-+ +-+.+||+.||.|++|....+.........|. ..|+.+.|+.+|+.+..+..||.+.+|.+...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-- 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-- 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc--
Confidence 44566666666 44899999999999999988765433443454 88999999999999999999999999998622
Q ss_pred EEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccce
Q 002389 726 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVERE 805 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~ 805 (929)
.......|......|..-+..+++++.+ +.++.+.+||.--.....
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~s~~~tag~s----------------------------------~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGSLLATAGRS----------------------------------SDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred ceeccccCCccccceeeeehhhhccccC----------------------------------CCCCcccchhcccCcccc
Confidence 2222234444444444333444443211 123445555543211111
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 885 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~ 885 (929)
. +-..|....+.+++-|.....++++ .+|.|++||++..++.+.+.. +. ...++++|+..|.|+
T Consensus 2330 ~-----v~~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2330 L-----VHTCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred e-----eeeecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 1 0134677788888889888888877 778999999998877665543 33 567899999999999
Q ss_pred EEECCCCcEEEEEeCC---CC---eEEEE--Ec-CCEEEEEECCCc
Q 002389 886 IWLRGTQQKVGRISAG---SK---ITSLL--TA-NDIVLCGTETGL 922 (929)
Q Consensus 886 IWdl~sg~~i~tl~~h---~~---Vtsvs--~d-g~~LaSgs~DG~ 922 (929)
||++.....++++... +. ++... .+ .+.|++++.||+
T Consensus 2394 Iw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred EEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 9999888888777643 21 22222 22 557888888874
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.60 E-value=6.5e-06 Score=95.40 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=118.1
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECC---CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADK--TIGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~D---GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~Dg--tIrIW 718 (929)
.+.+.+.+..|+ ++ +|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+.|+ +.+.++ .|.+|
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 356678888998 43 67666543 48999999987543 3334556677899999999865 445444 58888
Q ss_pred EccCCeEEEEEEeccCCCe--EEeccCCCEEEEEecC-CeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEE
Q 002389 719 QMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQG-HRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQE 795 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V--~s~s~~g~~L~sgs~D-g~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~i 795 (929)
|+.++..... ..+.... ..|+++++.++.++.. +. ..|++
T Consensus 264 d~~~~~~~~l--~~~~~~~~~~~~s~dg~~l~~~s~~~g~-----------------------------------~~iy~ 306 (417)
T TIGR02800 264 DLDGKQLTRL--TNGPGIDTEPSWSPDGKSIAFTSDRGGS-----------------------------------PQIYM 306 (417)
T ss_pred ECCCCCEEEC--CCCCCCCCCEEECCCCCEEEEEECCCCC-----------------------------------ceEEE
Confidence 9887753222 1122111 2466777766655432 11 12334
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD--gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
+|+.++....+ ..+........++|++.+++..+.++ ..|.+||+.++... .+..+ .......|+|||+
T Consensus 307 ~d~~~~~~~~l-------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 307 MDADGGEVRRL-------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred EECCCCCEEEe-------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCC
Confidence 44433322111 11123344566778776655544222 27888998876543 33222 2345568999999
Q ss_pred EEEEEeCCC---cEEEEECCCCcEEEEEeC
Q 002389 874 YLNYNSSAS---SLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 874 ~LaSgS~DG---~I~IWdl~sg~~i~tl~~ 900 (929)
+|+..+.++ .+++.+. +|.....+..
T Consensus 378 ~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~ 406 (417)
T TIGR02800 378 MILYATTRGGRGVLGLVST-DGRFRARLPL 406 (417)
T ss_pred EEEEEEeCCCcEEEEEEEC-CCceeeECCC
Confidence 998877654 3444443 4444555543
No 257
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.59 E-value=2.5e-05 Score=90.19 Aligned_cols=256 Identities=12% Similarity=0.112 Sum_probs=156.4
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTS-FSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 733 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vts-lafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h 733 (929)
+...++.++.++.+|.+..+|.++++. +...+.. +.+.+ ... .+..++.++.++.+.-+|..+|+.........
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEV--AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCC--cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 445578888899999999999998864 4443322 22221 111 24567778889999999999998655443321
Q ss_pred CCC-e---EEeccCCCEEEEEecCCeEEEEeCCCcee--eec--cC---CC-------eEEEEEeCCEEEEEECCCcEEE
Q 002389 734 KEP-I---RKLDTYGKTIFASTQGHRMKVIDSSRTLK--DIY--RS---KG-------IKSMSVVQGKIYIGCMDSSIQE 795 (929)
Q Consensus 734 ~~~-V---~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~--~l~--~~---~~-------V~sla~sdg~llsgs~Dg~I~i 795 (929)
... . .+-...+..++.++.+|.+..+|...... ... .. .. ..+..+.++.+++++.+|.+..
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 100 0 00011234677788888888887662111 100 00 00 1122234788888999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIY 874 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~~V~slafSpdg~~ 874 (929)
+|..+|+.. |.........+....+.++..+ .++.+..+|..+++.+-....-. ....+... .+.+
T Consensus 271 ld~~tG~~~--------W~~~~~~~~~~~~~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~ 337 (394)
T PRK11138 271 LDLRSGQIV--------WKREYGSVNDFAVDGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGY 337 (394)
T ss_pred EECCCCCEE--------EeecCCCccCcEEECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCE
Confidence 999987642 3222111122333344455443 46889999998887654332111 11122222 2556
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEE-EEEcCCEEEEEECCCcEEEeec
Q 002389 875 LNYNSSASSLQIWLRGTQQKVGRISAG-SKITS-LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vts-vs~dg~~LaSgs~DG~I~IWdi 928 (929)
++.++.||.+++.|..+|+.+.+.+.+ ..+.+ -...+..|+.++.||.|+.++.
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 778889999999999999998888754 33443 3345678999999999998764
No 258
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.57 E-value=1.4e-06 Score=98.40 Aligned_cols=188 Identities=12% Similarity=0.139 Sum_probs=127.8
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEec--cCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCe
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVK--EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPI 737 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~--gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V 737 (929)
-+..|-.-|.|.+.|....+...+.... -.+..|+|+.|-|.++. ++.+-.+|.+.++|... ..+...+-
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~ 259 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPS 259 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCc
Confidence 5788888899998887653221111111 12468999999997665 55566799999998721 11122222
Q ss_pred EEeccCCCEEEEEecC-----CeEEEEeCCCceeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccc
Q 002389 738 RKLDTYGKTIFASTQG-----HRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPF 810 (929)
Q Consensus 738 ~s~s~~g~~L~sgs~D-----g~V~IWDl~~~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~ 810 (929)
...-..+..+.....- +-+.-|- .....|..++|+ ||+ +++.+.||.+++||..+.....+
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~--------~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---- 327 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWH--------IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---- 327 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeE--------eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH----
Confidence 2233344443332211 1122222 123468888887 887 88899999999999987443322
Q ss_pred cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 002389 811 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 811 ~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp 870 (929)
.+..-....++.++||+.|+++++ +|.-|.+|.+..++++..-.+|..+|+.++|.|
T Consensus 328 --mkSYFGGLLCvcWSPDGKyIvtGG-EDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 --MKSYFGGLLCVCWSPDGKYIVTGG-EDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --HHhhccceEEEEEcCCccEEEecC-CcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 122246788999999999999988 667999999999999999999999999999986
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=2.6e-05 Score=91.10 Aligned_cols=233 Identities=9% Similarity=-0.026 Sum_probs=136.3
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE--E-EEEeCCC--eEEEEEccCCeEEEEEEeccCCCeEEeccC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES--L-LSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTY 743 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~--L-aSgs~Dg--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~ 743 (929)
+.|.+.|..++.. +.+..+...+.+-.|+|||+. + ++...+| .|.+.++.+|+...............|+|+
T Consensus 165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence 4677778877653 334445566778899999985 3 2444443 577778887764433322222223468999
Q ss_pred CCEEEEEec-CC----eEEEEeCCC----ceeeecc-C-CCeEEEEEe-CCE-EEEEE-CCCcEEEEE--ccCCccceec
Q 002389 744 GKTIFASTQ-GH----RMKVIDSSR----TLKDIYR-S-KGIKSMSVV-QGK-IYIGC-MDSSIQELA--VSNNVEREIK 807 (929)
Q Consensus 744 g~~L~sgs~-Dg----~V~IWDl~~----~~~~l~~-~-~~V~sla~s-dg~-llsgs-~Dg~I~iwD--l~tg~~~~i~ 807 (929)
|+.|+..+. +| .+..|++.. ....+.. . .......|+ ||+ ++..+ .+|...+|. +..+... .
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~- 319 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-P- 319 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-e-
Confidence 998887653 22 334466542 2222322 2 223566787 776 55544 466555554 4321110 0
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC---CC
Q 002389 808 APFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS---AS 882 (929)
Q Consensus 808 ~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD--gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~---DG 882 (929)
+........+....++|++..++..+..+ ..|.+||..++.... +......+....|+|||++|+..+. .+
T Consensus 320 ---~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 320 ---RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred ---EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence 11122234556778899988766544332 479999999887544 3333345678999999998875443 35
Q ss_pred cEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 002389 883 SLQIWLRGTQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 883 ~I~IWdl~sg~~i~tl~~h~~Vtsvs~d 910 (929)
.|++||+.+++........+.+...+|+
T Consensus 396 ~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 396 ELYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred eEEEEECCCCCEEEeecCCCcccCceec
Confidence 7888898877664444433444445554
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.55 E-value=3.4e-06 Score=90.90 Aligned_cols=238 Identities=12% Similarity=0.091 Sum_probs=153.4
Q ss_pred CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeE
Q 002389 680 SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRM 756 (929)
Q Consensus 680 ~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V 756 (929)
++.....++||.+.|++...-|-..-+++.+.|.++|||--++ ++.-.........++++ .......+++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 3345677889999999988888888899999999999995443 43222222223344554 45666788888899999
Q ss_pred EEEeCCCcee------ee-ccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC
Q 002389 757 KVIDSSRTLK------DI-YRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK 827 (929)
Q Consensus 757 ~IWDl~~~~~------~l-~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~ 827 (929)
.-+....... .. .+...+..+.|+ ...+++.+.|..+..--.+.|.... +....+....+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg-----------~Y~~~~~~t~~ 161 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG-----------GYNFETPASAL 161 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc-----------ceEeeccCCCC
Confidence 9887763221 11 123457777776 4447777777765443333322110 00000000001
Q ss_pred CceEEEEEe-cCCCeEEEE--ECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCC-
Q 002389 828 DWLYSASSS-VEGSNIKEW--RRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-VGRISAGS- 902 (929)
Q Consensus 828 d~i~~~s~S-~dDgtI~IW--Dl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~-i~tl~~h~- 902 (929)
+......+- ...|.|..- ..+.-.++.++.+|.+.+.+++|.|....+.+|..|..+.+||+.-.+- ...+.+|.
T Consensus 162 ~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 162 QFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred ceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 111111111 112333332 3455567889999999999999999999999999999999999865544 45667774
Q ss_pred CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 903 KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 903 ~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.|..+..- -+.+++++.||.|.+|++
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 47776543 568999999999999986
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.9e-07 Score=103.15 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=144.3
Q ss_pred ecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCC-----eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 002389 644 ASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS-----AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 716 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~-----~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIr 716 (929)
...||...|..+.-- .+.+++++.|++|++|.++..- .....+++.|+.+|.++.|-.+.++++++ ||-|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 344999999998775 4589999999999999987421 12467889999999999999999888865 88999
Q ss_pred EEEccCCeEEEEEEe----ccCCCeEEecc-CCCEEEEE-ecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECC
Q 002389 717 VWQMVQRKLELIEVI----ATKEPIRKLDT-YGKTIFAS-TQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMD 790 (929)
Q Consensus 717 IWDl~tg~~~~~~~~----~h~~~V~s~s~-~g~~L~sg-s~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~D 790 (929)
+||.--|+....... +....|.++.. +...++.+ +...+|+++|
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D------------------------------ 857 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD------------------------------ 857 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeee------------------------------
Confidence 999866654321111 11122333322 22222222 3344455444
Q ss_pred CcEEEEEccCCccceeccccccc--ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSW--RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~--~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf 868 (929)
.+.++..... ++. .+.+..+.+++..+.+...++.- ..|.|.+.|.++|..+............++
T Consensus 858 -------aRsce~~~E~---kVcna~~Pna~~R~iaVa~~GN~lAa~L-SnGci~~LDaR~G~vINswrpmecdllqla- 925 (1034)
T KOG4190|consen 858 -------ARSCEWTCEL---KVCNAPGPNALTRAIAVADKGNKLAAAL-SNGCIAILDARNGKVINSWRPMECDLLQLA- 925 (1034)
T ss_pred -------cccccceeeE---EeccCCCCchheeEEEeccCcchhhHHh-cCCcEEEEecCCCceeccCCcccchhhhhc-
Confidence 4433221100 011 12345567777777766654432 467888999888887766655444444443
Q ss_pred ecCCCEEEEEeCCCcEEE-EECCCCcEEEEEeCCC-CeEEEEEcCCEEEEEECCCcEEEe
Q 002389 869 VEDFIYLNYNSSASSLQI-WLRGTQQKVGRISAGS-KITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~I-Wdl~sg~~i~tl~~h~-~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
.|..+.++....|.++.+ |...+|....+.+... +-.-+..-|..++++.....+.+|
T Consensus 926 apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 926 APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEE
Confidence 356677887778888888 8876665554444321 110011114445555555555555
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=0.00036 Score=76.46 Aligned_cols=257 Identities=9% Similarity=0.085 Sum_probs=160.7
Q ss_pred CCeEEEEECCCCCee-EEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEccC--CeEEEEEEe--ccCC-CeE
Q 002389 668 DGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSAD---KTIGVWQMVQ--RKLELIEVI--ATKE-PIR 738 (929)
Q Consensus 668 DGtIrIWD~~~~~~~-~i~~l~gH~~~Vtslafspdg~~LaSgs~D---gtIrIWDl~t--g~~~~~~~~--~h~~-~V~ 738 (929)
++-|++|++.+.+.. ....+-.+.+.++-++|+|++++|+++-.+ |.|--|.++. |++...... .... .-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998854322 112223567788999999999999988654 6777777664 665433322 1222 223
Q ss_pred EeccCCCEEEEEec-CCeEEEEeCCC--ce----eeeccC----------CCeEEEEEe-CCEEEEEEC--CCcEEEEEc
Q 002389 739 KLDTYGKTIFASTQ-GHRMKVIDSSR--TL----KDIYRS----------KGIKSMSVV-QGKIYIGCM--DSSIQELAV 798 (929)
Q Consensus 739 s~s~~g~~L~sgs~-Dg~V~IWDl~~--~~----~~l~~~----------~~V~sla~s-dg~llsgs~--Dg~I~iwDl 798 (929)
+++.++++++++.. .|.|.++-++. .+ ....+. ..+....+. +++++++.. -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 68899999998875 46899988752 11 122221 115566665 777555543 346889999
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-CeEEEecC---------CCCCeEEEEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-PQISIAPE---------KGTTIQAMAV 868 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~~i~~l~~---------h~~~V~slaf 868 (929)
..|....... ... ..+...+.+.|||++.++-...-=+++|-+|..+.. .....+.. ...+..+|..
T Consensus 175 ~dg~L~~~~~-~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 175 DDGKLTPADP-AEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccCccccccc-ccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 8766543321 111 346667889999999887766656789999997763 11222211 2236778999
Q ss_pred ecCCCEEEEEe-CCCcEEEEECC--CCcE--EEEEeCCCC-eEEEE--EcCCEEEEEECC-CcEEEee
Q 002389 869 VEDFIYLNYNS-SASSLQIWLRG--TQQK--VGRISAGSK-ITSLL--TANDIVLCGTET-GLIKGWI 927 (929)
Q Consensus 869 Spdg~~LaSgS-~DG~I~IWdl~--sg~~--i~tl~~h~~-Vtsvs--~dg~~LaSgs~D-G~I~IWd 927 (929)
+|||+||.++. ....|-+|.+. ++++ +.....++. -+.+. ++|++|++++.| ..|.+|.
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 99999998765 34578888753 3332 233333333 45544 458888887775 3577664
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.44 E-value=0.00019 Score=80.98 Aligned_cols=222 Identities=11% Similarity=0.084 Sum_probs=132.8
Q ss_pred CCCeEEEEECCCCCeeEEEEeccC-------CCcEEEEEEcCCCCEEEEEe-C-CCeEEEEEccCCeEEEEEEeccCCCe
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGS-A-DKTIGVWQMVQRKLELIEVIATKEPI 737 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH-------~~~Vtslafspdg~~LaSgs-~-DgtIrIWDl~tg~~~~~~~~~h~~~V 737 (929)
.+..|.+||..+.+. +.++.-- ......++++|||++|+... . +..|-+.|+.+++.......+....+
T Consensus 75 ~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v 152 (352)
T TIGR02658 75 RTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI 152 (352)
T ss_pred CCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 589999999999864 5555321 12234788999999988665 3 78999999999886544333222222
Q ss_pred EEeccCCCEEEEEecCCeEEEEeCC--Cce-----eeecc------CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCcc
Q 002389 738 RKLDTYGKTIFASTQGHRMKVIDSS--RTL-----KDIYR------SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 738 ~s~s~~g~~L~sgs~Dg~V~IWDl~--~~~-----~~l~~------~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~ 803 (929)
....... ..+.+.||........ +.. ..+.. ..+ .. +. +|+.+-.+..|.|++.|+.....
T Consensus 153 y~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~-~~~dg~~~~vs~eG~V~~id~~~~~~ 227 (352)
T TIGR02658 153 FPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AY-SNKSGRLVWPTYTGKIFQIDLSSGDA 227 (352)
T ss_pred EEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ce-EcCCCcEEEEecCCeEEEEecCCCcc
Confidence 2211111 1122233333322221 110 00101 111 11 23 67755555559999999755432
Q ss_pred ceeccccc---------ccccCCCCeEEEEEcCCceEEEE-Eec--------CCCeEEEEECCCCCeEEEecCCCCCeEE
Q 002389 804 REIKAPFK---------SWRLQSKPINSLVVYKDWLYSAS-SSV--------EGSNIKEWRRHRKPQISIAPEKGTTIQA 865 (929)
Q Consensus 804 ~~i~~~~~---------~~~~~~~~I~sl~~~~d~i~~~s-~S~--------dDgtI~IWDl~~~~~i~~l~~h~~~V~s 865 (929)
... .+.. -|. ...+.-+++++++..+.. ... .++.|.++|..+++.+..+.. ...+..
T Consensus 228 ~~~-~~~~~~~~~~~~~~wr--P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~ 303 (352)
T TIGR02658 228 KFL-PAIEAFTEAEKADGWR--PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDS 303 (352)
T ss_pred eec-ceeeeccccccccccC--CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceee
Confidence 211 1101 122 122334888877655433 211 225899999999998877653 457899
Q ss_pred EEEecCCC-EEEEEe-CCCcEEEEECCCCcEEEEEe
Q 002389 866 MAVVEDFI-YLNYNS-SASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 866 lafSpdg~-~LaSgS-~DG~I~IWdl~sg~~i~tl~ 899 (929)
++++||++ +|++.. .++.|.++|..+++.+.++.
T Consensus 304 iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 304 INVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 99999999 777665 67899999999999999983
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=0.00016 Score=92.96 Aligned_cols=109 Identities=13% Similarity=0.012 Sum_probs=70.7
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---------------------CCCCeEEEEEecCCCEEEEE
Q 002389 820 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---------------------KGTTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 820 I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~---------------------h~~~V~slafSpdg~~LaSg 878 (929)
...+.+++++..+......++.|++||..++.......+ .-....+++++++|..+++-
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD 821 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD 821 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence 445667776543322333567788888765542211100 01134689999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEeCC--------------CCeEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 879 SSASSLQIWLRGTQQKVGRISAG--------------SKITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 879 S~DG~I~IWdl~sg~~i~tl~~h--------------~~Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
+.++.|++||..++........+ .....+++ +|+.+++-+.+++|++||+
T Consensus 822 s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 99999999999887654322111 12455555 4888888899999999985
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=5.1e-05 Score=88.64 Aligned_cols=212 Identities=9% Similarity=0.033 Sum_probs=124.7
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECC---CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADK--TIGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~D---GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~Dg--tIrIW 718 (929)
.|...+....|+ ++ .|+..+.+ ..|.+||+.+++...+. ...+.+....|+|||++|+ +.+.+| .|.+|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 456788999999 44 67655543 36999999988653333 3334455789999999876 555555 68888
Q ss_pred EccCCeEEEEEEeccCCCeEEeccCCCEEEEEec-CC--eEEEEeCC-Cceeeecc-CCCeEEEEEe-CCE-EEEEEC-C
Q 002389 719 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ-GH--RMKVIDSS-RTLKDIYR-SKGIKSMSVV-QGK-IYIGCM-D 790 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~-Dg--~V~IWDl~-~~~~~l~~-~~~V~sla~s-dg~-llsgs~-D 790 (929)
|+.++.............-..|+++|+.++..+. +| .|+++|+. +....+.. ........|+ +|+ ++..+. +
T Consensus 273 d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 273 DLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred ECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC
Confidence 9988764332211111112368899998877664 33 67777765 23332222 2223345665 665 444433 3
Q ss_pred C--cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEE
Q 002389 791 S--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAM 866 (929)
Q Consensus 791 g--~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~sl 866 (929)
+ .|.++|+.++....+.. ........++|++...+..+.+++ .+.+++.+++. ...+..+.+.+...
T Consensus 353 ~~~~l~~~dl~tg~~~~lt~--------~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~~p 423 (430)
T PRK00178 353 GNFHVAAQDLQRGSVRILTD--------TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTAQGEVREP 423 (430)
T ss_pred CceEEEEEECCCCCEEEccC--------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCCCCCcCCC
Confidence 3 57888988875543311 111123467888776655443333 46677776544 33444455566777
Q ss_pred EEec
Q 002389 867 AVVE 870 (929)
Q Consensus 867 afSp 870 (929)
+|+|
T Consensus 424 ~ws~ 427 (430)
T PRK00178 424 SWSP 427 (430)
T ss_pred ccCC
Confidence 7776
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2e-05 Score=89.87 Aligned_cols=229 Identities=10% Similarity=0.164 Sum_probs=149.4
Q ss_pred EEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE--EE-----EEeCCCeEEEEEccCCe
Q 002389 653 TALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES--LL-----SGSADKTIGVWQMVQRK 724 (929)
Q Consensus 653 tsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~--La-----Sgs~DgtIrIWDl~tg~ 724 (929)
|+..|+ |..++.=-..+.+.+|+....+ ...+.+ |...|+.+.++|.+.. ++ ++|.-+.|+||....+.
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~-~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFK-TIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcc-ceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 688888 5566655556789999998754 233444 6788999999997442 44 35667789999876322
Q ss_pred EE----EEEEeccCCCeEEeccCCCEEE-EEe-----------cCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE--
Q 002389 725 LE----LIEVIATKEPIRKLDTYGKTIF-AST-----------QGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-- 783 (929)
Q Consensus 725 ~~----~~~~~~h~~~V~s~s~~g~~L~-sgs-----------~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-- 783 (929)
.. .......+.....|..-|.-++ .++ ...+++++++++ ....+...++|.++.|+ +|+
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence 10 0001111111123444454322 221 234788888874 34445567889999997 664
Q ss_pred -EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEE--EEEecCCCeEEEEECCCCCeEEEecCCC
Q 002389 784 -IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS--ASSSVEGSNIKEWRRHRKPQISIAPEKG 860 (929)
Q Consensus 784 -llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~--~s~S~dDgtI~IWDl~~~~~i~~l~~h~ 860 (929)
++-|-.-..+.+||++..- ++....++-+++-++|.+.++ ++|+.--|.|-+||..+.+.+..+...
T Consensus 286 ~VvyGfMPAkvtifnlr~~~---------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~- 355 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLRGKP---------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA- 355 (566)
T ss_pred EEEEecccceEEEEcCCCCE---------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-
Confidence 3336667889999998632 223346777888888877654 455544589999999888777766443
Q ss_pred CCeEEEEEecCCCEEEEEeC------CCcEEEEECCCCcEEE
Q 002389 861 TTIQAMAVVEDFIYLNYNSS------ASSLQIWLRGTQQKVG 896 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~------DG~I~IWdl~sg~~i~ 896 (929)
.-+-+.|+|||.+++|++. |+.++||+. +|..+.
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH 395 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence 4466899999999988764 688999997 455544
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.38 E-value=5.3e-05 Score=85.62 Aligned_cols=265 Identities=12% Similarity=0.089 Sum_probs=153.7
Q ss_pred CCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-------------
Q 002389 648 CSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------------- 712 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D------------- 712 (929)
-.-++..++|| .| +|++... ..|.+|+..... . +..+ .|. .|..+.|+|++++|.|=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~-~-l~~~-~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA-K-LVRF-RHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchh-h-eeee-ecC-CceecccCcccceeeeeccCCccChhhccCCcc
Confidence 45688899999 34 5555544 458899988764 2 3333 343 58999999999999986543
Q ss_pred --CeEEEEEccCCeEEEEEEecc----CCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeec----cCCCeEEEEEeCC
Q 002389 713 --KTIGVWQMVQRKLELIEVIAT----KEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY----RSKGIKSMSVVQG 782 (929)
Q Consensus 713 --gtIrIWDl~tg~~~~~~~~~h----~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~----~~~~V~sla~sdg 782 (929)
+.+.+||+.+|.......... .-++..|+.+..+.+-. ....++++++........ ...++....++.+
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence 349999999987654332211 12355555555544333 233455555321110000 0111222222100
Q ss_pred ---E-EEE-----EECC-----------------------------------------------------CcEEEEEccC
Q 002389 783 ---K-IYI-----GCMD-----------------------------------------------------SSIQELAVSN 800 (929)
Q Consensus 783 ---~-lls-----gs~D-----------------------------------------------------g~I~iwDl~t 800 (929)
. ++. ++.+ ..++++++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 0 010 1122 2334444432
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEE-EecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS-SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s-~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
... +.-..-..+|+.+.+.|.....+. .++....+.++|++++. ... ...+.=+.+.|+|.+++++.++
T Consensus 265 ~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-~~~--~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 265 RSI-------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-RFY--FPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ccc-------ceeccccccceeeeecccCCceeEEecccccceeecccccce-EEe--cCCcccccccccCcccEEEEec
Confidence 110 111122678888888776553333 33566788899988872 322 2344456788999999999988
Q ss_pred CC---CcEEEEECCCCcE-EEEEeCCCC-eEEEEEcCCEEEEEEC------CCcEEEeec
Q 002389 880 SA---SSLQIWLRGTQQK-VGRISAGSK-ITSLLTANDIVLCGTE------TGLIKGWIP 928 (929)
Q Consensus 880 ~D---G~I~IWdl~sg~~-i~tl~~h~~-Vtsvs~dg~~LaSgs~------DG~I~IWdi 928 (929)
-| |.|-+||...... +..+.+.+. ...+++|++++.+... |..|+||++
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 66 7899999765544 447776644 4446778887776543 778999986
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=4.9e-05 Score=89.36 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=121.8
Q ss_pred CCCCCEEEEEEe-CC-EEEEEEC-CC--eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCe--EEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFS-DG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKT--IGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~-DG--tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~Dgt--IrIW 718 (929)
.+...+.+..|+ ++ .|+..+. ++ .|.+||+.+++...+..+.+ ......|+|||+.|+ +.+.+|. |.+|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 346678889999 44 5665443 33 58889998876544433333 344679999999876 4566665 7777
Q ss_pred EccCCeEEEEEEeccCCCeEEeccCCCEEEEEec-CC--eEEEEeCC-Cceeeec-cCCCeEEEEEe-CCE-EEEEE-CC
Q 002389 719 QMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ-GH--RMKVIDSS-RTLKDIY-RSKGIKSMSVV-QGK-IYIGC-MD 790 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~-Dg--~V~IWDl~-~~~~~l~-~~~~V~sla~s-dg~-llsgs-~D 790 (929)
|+.+++............-.+|+++++.++..+. ++ .|+++|.. +....+. .........|+ ||+ ++..+ .+
T Consensus 292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC
Confidence 8887764332211111122368999998877654 33 56666765 3333332 22223345666 665 44433 34
Q ss_pred C--cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEE
Q 002389 791 S--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAM 866 (929)
Q Consensus 791 g--~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~sl 866 (929)
+ .|.++|+.++....+.. ........++|++..++-.+..++ .+.+++.+.+ ....+..+.+.+...
T Consensus 372 g~~~I~~~dl~~g~~~~lt~--------~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~~g~~~~p 442 (448)
T PRK04792 372 GKFNIARQDLETGAMQVLTS--------TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAGQGEVKSP 442 (448)
T ss_pred CceEEEEEECCCCCeEEccC--------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCC
Confidence 4 45567777765432211 011112357788766554443443 4677777544 455565566667777
Q ss_pred EEec
Q 002389 867 AVVE 870 (929)
Q Consensus 867 afSp 870 (929)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 8876
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.33 E-value=3.5e-06 Score=97.85 Aligned_cols=270 Identities=10% Similarity=0.047 Sum_probs=164.3
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCC--CcEEEEEEcCCCC---EEEEEeCCCeEEEEEcc
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--KAVTSFSLFEPGE---SLLSGSADKTIGVWQMV 721 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~--~~Vtslafspdg~---~LaSgs~DgtIrIWDl~ 721 (929)
.+++..+..+ +.-++.++.-|- .+-|+...-..+ .-+ .|. -.|-.+.|+|... .+++.+..++ .+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~pp-r~l-~h~tpw~vad~qws~h~a~~~wiVsts~qka-iiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPP-RWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCc-eee-eccCcchhcceecccCCCCceeEEecCcchh-hhhhhh
Confidence 4567777776 445777776664 455665432111 112 222 2366778887543 3666665554 589886
Q ss_pred CC--eEEEEEEeccCCCeEEecc---CCCEEEEEecCCeEEEEeCCCceeeecc----CCCeEEEEEe--CCEEEEEECC
Q 002389 722 QR--KLELIEVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSSRTLKDIYR----SKGIKSMSVV--QGKIYIGCMD 790 (929)
Q Consensus 722 tg--~~~~~~~~~h~~~V~s~s~---~g~~L~sgs~Dg~V~IWDl~~~~~~l~~----~~~V~sla~s--dg~llsgs~D 790 (929)
.. +-+.....+|...++.+.. +...+++++.|..+..||++.....+.. +.....++|+ ++.+++.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 43 3344556688888887654 4458899999999999999854443332 4456677776 8888889999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeE-EEecCCCCCeEEEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQI-SIAPEKGTTIQAMAV 868 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~~i-~~l~~h~~~V~slaf 868 (929)
..|.+||.+.|..... ..++|-..++.+.+..-.. ...+ +..|++++.||....... ........+|+.-.+
T Consensus 180 ~~i~vwd~r~gs~pl~-----s~K~~vs~vn~~~fnr~~~s~~~s-~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLC-----SLKGHVSSVNSIDFNRFKYSEIMS-SSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred CceEEEeccCCCcceE-----EecccceeeehHHHhhhhhhhhcc-cCCCCceeeecccccccccceeccccCcceeccc
Confidence 9999999988653221 2233444555555443211 1222 236899999997654321 112223346666667
Q ss_pred ecCC--CEEEEEeCCCcEEE---------EECCC-CcEEEEEeCCCC-eEEEEEc------C------CEEEEEECCCcE
Q 002389 869 VEDF--IYLNYNSSASSLQI---------WLRGT-QQKVGRISAGSK-ITSLLTA------N------DIVLCGTETGLI 923 (929)
Q Consensus 869 Spdg--~~LaSgS~DG~I~I---------Wdl~s-g~~i~tl~~h~~-Vtsvs~d------g------~~LaSgs~DG~I 923 (929)
.|-| .++.---.++.+.+ |+..+ .+++++|.||.. |..+.|- | -.|+|-+.|.++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 6633 33322222334444 44333 467999999965 5554442 1 289999999999
Q ss_pred EEeec
Q 002389 924 KGWIP 928 (929)
Q Consensus 924 ~IWdi 928 (929)
++|.+
T Consensus 334 rlWpI 338 (1081)
T KOG0309|consen 334 RLWPI 338 (1081)
T ss_pred Eeeec
Confidence 99975
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.0015 Score=71.85 Aligned_cols=248 Identities=13% Similarity=0.169 Sum_probs=159.6
Q ss_pred CCCCCEEEEEEe-CC-EEEEEEC---CCeEEEEECCC--CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFS---DGSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVW 718 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~---DGtIrIWD~~~--~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-DgtIrIW 718 (929)
.+.+.++-++|+ ++ .|.++-. +|.|..|.++. ++...+.....-..+-+.++++++|++++++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 457788899998 33 5776654 47787777765 554444333333344488999999999888764 5789999
Q ss_pred EccC-CeEEEE-EEeccCCC----------eE--EeccCCCEEEEEecC-CeEEEEeCCC-ce-----eeeccCCCeEEE
Q 002389 719 QMVQ-RKLELI-EVIATKEP----------IR--KLDTYGKTIFASTQG-HRMKVIDSSR-TL-----KDIYRSKGIKSM 777 (929)
Q Consensus 719 Dl~t-g~~~~~-~~~~h~~~----------V~--s~s~~g~~L~sgs~D-g~V~IWDl~~-~~-----~~l~~~~~V~sl 777 (929)
-+.. |.+... ....|..+ ++ .++|+++++++..-. ..|.+|++.. .+ ..+..+.+.+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 443222 22223322 33 378999999988654 3788998872 11 122346678899
Q ss_pred EEe-CCE-EEE-EECCCcEEEEEccC--Cccceecccccccc--cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--
Q 002389 778 SVV-QGK-IYI-GCMDSSIQELAVSN--NVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-- 848 (929)
Q Consensus 778 a~s-dg~-lls-gs~Dg~I~iwDl~t--g~~~~i~~~~~~~~--~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-- 848 (929)
.|+ +++ .++ .--+++|.+|.... ++...++.....-. ........+..++++.++.+..-....|.+|.+.
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 998 777 334 44589999999877 33333321111111 1234556788889999887765444578888754
Q ss_pred CCCe--EEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEEEEEC--CCCcE
Q 002389 849 RKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSA-SSLQIWLR--GTQQK 894 (929)
Q Consensus 849 ~~~~--i~~l~~h~~~V~slafSpdg~~LaSgS~D-G~I~IWdl--~sg~~ 894 (929)
++.+ +.....+...-+...|+|+|++|+++..+ ..|.+|.+ .+|++
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 3332 23334455567899999999999888854 56888864 45554
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.3e-07 Score=99.20 Aligned_cols=206 Identities=13% Similarity=0.090 Sum_probs=126.1
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-----EEEEEE-eccCCCeEEeccCCCEEEEEecCCeE
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-----LELIEV-IATKEPIRKLDTYGKTIFASTQGHRM 756 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~-----~~~~~~-~~h~~~V~s~s~~g~~L~sgs~Dg~V 756 (929)
.+..+.||+..|..++--.+.+.+++++.|++|++|.++... ..|... ..|+.+|..+..-.+.-..++.||.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~gi 806 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGI 806 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcc
Confidence 356778999999998877777889999999999999986521 112222 24555555443222222233445555
Q ss_pred EEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 757 KVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 757 ~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
++|| .--|+..... ....-.+.+..|.++..-...+..+.++
T Consensus 807 HlWD-------------------------------------PFigr~Laq~-~dapk~~a~~~ikcl~nv~~~iliAgcs 848 (1034)
T KOG4190|consen 807 HLWD-------------------------------------PFIGRLLAQM-EDAPKEGAGGNIKCLENVDRHILIAGCS 848 (1034)
T ss_pred eeec-------------------------------------ccccchhHhh-hcCcccCCCceeEecccCcchheeeecc
Confidence 5555 3332211100 0000011233444444323334444333
Q ss_pred cCCCeEEEEECCCCCeEEEe-----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEE-EEE
Q 002389 837 VEGSNIKEWRRHRKPQISIA-----PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITS-LLT 909 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~i~~l-----~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vts-vs~ 909 (929)
...+++++|.+.......+ .+...-+++++..|.|++++.|-..|.|.+.|.++|+.+..+..-.. ... .++
T Consensus 849 -aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaap 927 (1034)
T KOG4190|consen 849 -AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAP 927 (1034)
T ss_pred -chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCc
Confidence 4568999998877654433 34556789999999999999999999999999999998887764321 222 335
Q ss_pred cCCEEEEEECCCcEEE-ee
Q 002389 910 ANDIVLCGTETGLIKG-WI 927 (929)
Q Consensus 910 dg~~LaSgs~DG~I~I-Wd 927 (929)
+.+.++....|.++.+ |-
T Consensus 928 sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 928 SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred hhHHHHhhcccceeEeeeh
Confidence 6666776666777766 63
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.28 E-value=0.00032 Score=74.47 Aligned_cols=216 Identities=17% Similarity=0.099 Sum_probs=129.4
Q ss_pred CCCeEEEEECCCCCeeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE-Eecc
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKE---HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR-KLDT 742 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~g---H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~-s~s~ 742 (929)
.+|+|..||..+++. +....- ....+ +. ..+++.++++++.++.+..||..+|+....... ..++. ....
T Consensus 1 ~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKE--LWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV 74 (238)
T ss_dssp -TSEEEEEETTTTEE--EEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE
T ss_pred CCCEEEEEECCCCCE--EEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee
Confidence 378999999988864 444422 22222 11 234677888888999999999999987655544 22211 1245
Q ss_pred CCCEEEEEecCCeEEEEeCC-Cceeee-cc-C----C--CeEEEEEeCCEEEEEECCCcEEEEEccCCccceeccccccc
Q 002389 743 YGKTIFASTQGHRMKVIDSS-RTLKDI-YR-S----K--GIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW 813 (929)
Q Consensus 743 ~g~~L~sgs~Dg~V~IWDl~-~~~~~l-~~-~----~--~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~ 813 (929)
.+..+++++.++.+..+|.. +...-. .. . . ......+.++.++++..++.+..+|..+|+..-.... ..-
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCC
Confidence 67778888888999999965 322211 11 1 1 1223344477899999999999999999876332111 000
Q ss_pred ccCCCC-------eEEEEEcCCceEEEEEecCCC-eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 002389 814 RLQSKP-------INSLVVYKDWLYSASSSVEGS-NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 885 (929)
Q Consensus 814 ~~~~~~-------I~sl~~~~d~i~~~s~S~dDg-tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~ 885 (929)
. .... ........+ .. ...+ .++ .+.+ |..++...-... ...+.. ...+++..++.++.++.+.
T Consensus 154 ~-~~~~~~~~~~~~~~~~~~~~-~v-~~~~-~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 154 R-GSSPISSFSDINGSPVISDG-RV-YVSS-GDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp --SS--EEEETTEEEEEECCTT-EE-EEEC-CTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred C-CCcceeeecccccceEEECC-EE-EEEc-CCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEE
Confidence 0 0011 123333334 22 2222 344 3555 999988553332 222222 1456788888888999999
Q ss_pred EEECCCCcEEEE
Q 002389 886 IWLRGTQQKVGR 897 (929)
Q Consensus 886 IWdl~sg~~i~t 897 (929)
.||+.+|+.+.+
T Consensus 226 ~~d~~tG~~~W~ 237 (238)
T PF13360_consen 226 ALDLKTGKVVWQ 237 (238)
T ss_dssp EEETTTTEEEEE
T ss_pred EEECCCCCEEeE
Confidence 999999988653
No 273
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.7e-05 Score=86.59 Aligned_cols=251 Identities=11% Similarity=0.102 Sum_probs=169.6
Q ss_pred CCCCCEEEEEEe-CCEEEEEECCCeEEEEECCC-CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~-~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-DgtIrIWDl~tg 723 (929)
-|.+.|+.+... -+++.+++.||.++.|.-.. .-.+.+..+..|-+.|.+++.+-+|..+.|++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 488899998888 77999999999999998765 323456667889999999999999999999888 999999999875
Q ss_pred eEEE-EEEeccCCCeEEeccCCC---EE-EEEecCCeEEEEeCCCcee--eec---cCCCeEEEEEe--CCEEEEEECCC
Q 002389 724 KLEL-IEVIATKEPIRKLDTYGK---TI-FASTQGHRMKVIDSSRTLK--DIY---RSKGIKSMSVV--QGKIYIGCMDS 791 (929)
Q Consensus 724 ~~~~-~~~~~h~~~V~s~s~~g~---~L-~sgs~Dg~V~IWDl~~~~~--~l~---~~~~V~sla~s--dg~llsgs~Dg 791 (929)
.... .........+..+...|. .+ ++.-.++.+.++|-..... .+. +..+|.++.+. ...+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 4321 111122222333333442 22 2334678999999763322 111 24568888886 33477788899
Q ss_pred cEEEEEccCC-----c--cceecccccc--cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-----
Q 002389 792 SIQELAVSNN-----V--EREIKAPFKS--WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP----- 857 (929)
Q Consensus 792 ~I~iwDl~tg-----~--~~~i~~~~~~--~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~----- 857 (929)
.|..|..... . ....+..... +........++.+++++......+ +|..|++++..++.+++.+.
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEeccchhhhhhhccchh
Confidence 9999988731 0 0000000000 111245667888999988877776 77899999998887443321
Q ss_pred ---------------------------CCCC-CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 858 ---------------------------EKGT-TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 858 ---------------------------~h~~-~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
.|.. .-+.+.|...|++|+-|+-=| |+|.++.+++.++.+-
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1222 334577888999999887655 8999998888766553
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.25 E-value=2e-06 Score=99.89 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=87.2
Q ss_pred cCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 645 SHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
.+||+..|+.+.|+ ++.+++++.|..|..||+++.. .++..+..-..+-+.++|+--...+...+..+.|++||.+
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 46999999999998 5589999999999999999876 3455555545567789999776676667778889999999
Q ss_pred CCeEEEEEEeccCCCeEEecc---CCCEEEEEecCCeEEEEeCCC
Q 002389 722 QRKLELIEVIATKEPIRKLDT---YGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~---~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
.|.-......+|-..+..+.. ....+.+.+.||+|+.||..+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 876444444445444554432 233567777788888887764
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.23 E-value=0.00051 Score=72.84 Aligned_cols=212 Identities=14% Similarity=0.070 Sum_probs=128.7
Q ss_pred CCCeEEEEEccCCeEEEEEEecc--CCCeEEeccCCCEEEEEecCCeEEEEeCC-Ccee-eeccCCCeE-EEEEeCCEEE
Q 002389 711 ADKTIGVWQMVQRKLELIEVIAT--KEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTLK-DIYRSKGIK-SMSVVQGKIY 785 (929)
Q Consensus 711 ~DgtIrIWDl~tg~~~~~~~~~h--~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~-~~~~-~l~~~~~V~-sla~sdg~ll 785 (929)
.+|+|..||..+|+.......+. ...+.....++..+++++.++.+..||.. +... .......+. .....++.++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 37899999999998766654422 22222234478888888999999999985 3322 222222211 1345588899
Q ss_pred EEECCCcEEEEEccCCcccee-cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC--
Q 002389 786 IGCMDSSIQELAVSNNVEREI-KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT-- 862 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i-~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~-- 862 (929)
+++.++.++.+|..+|+..-. ...... ..............+.. .+.. .++.+..+|..+|..+.....+...
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~--~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVDGDRL-YVGT--SSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEETTEE-EEEE--TCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccceeeeEecccCCcceeeeecccccc-ccccccccCceEecCEE-EEEe--ccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 899999999999988875332 110000 00011112233333333 3322 3689999999999887666554322
Q ss_pred --------eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE-EEEcCCEEEEEECCCcEEEeec
Q 002389 863 --------IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITS-LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 863 --------V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vts-vs~dg~~LaSgs~DG~I~IWdi 928 (929)
+..-....++ .+..++.+|.+.-+|..+++.+.... .+.+.. ...++..++.++.||.|..||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 1122222345 66667777754444999999775444 333444 6677889998889999999985
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.23 E-value=1.4e-05 Score=83.56 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=118.3
Q ss_pred EEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeE-----EEE-EeCCEEEEEEC------CCcEEEEEccCCccce
Q 002389 738 RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIK-----SMS-VVQGKIYIGCM------DSSIQELAVSNNVERE 805 (929)
Q Consensus 738 ~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~-----sla-~sdg~llsgs~------Dg~I~iwDl~tg~~~~ 805 (929)
...+..++.++++..||.+.+++.++.. .......+. +.. .+.+.++.... -+..+.|++...+.
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t-- 171 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT-- 171 (319)
T ss_pred ccccccCCceEecCCCceEEEEechHHH-hhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc--
Confidence 3455667789999999999999987522 111111111 111 12444333332 33445555543211
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEec-CCCEEEEEeCCCc
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVE-DFIYLNYNSSASS 883 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSp-dg~~LaSgS~DG~ 883 (929)
. .+ .......+++++.||.....+..+.+||.+.+||.+... +...+..|..+|+.+-|+| ++..|+++++||.
T Consensus 172 ~-~~---~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 172 L-IP---SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred c-cc---cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 1 11 011234488999999888777777799999999987764 3556778999999999998 7789999999999
Q ss_pred EEEEECCCC-----------------cEEEE-EeCC----C---CeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 884 LQIWLRGTQ-----------------QKVGR-ISAG----S---KITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 884 I~IWdl~sg-----------------~~i~t-l~~h----~---~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
+..||-.+. .+++. ++-. + .|+++...|..+++|++-+.|++++-
T Consensus 248 lw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 248 LWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred EEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEecc
Confidence 999997631 11111 1100 1 14444444889999999999999864
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.23 E-value=3.9e-06 Score=63.07 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=35.8
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 682 MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 682 ~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
+++.++++|.++|++++|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35788999999999999999999999999999999997
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.21 E-value=0.00037 Score=88.29 Aligned_cols=262 Identities=13% Similarity=0.057 Sum_probs=155.9
Q ss_pred CCCCEEEEEEe--CCEEEEEECCCeEEEE----ECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 648 CSGAVTALIYY--KGLLCSGFSDGSIKMW----DIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 648 H~~~Vtsl~fs--~~~LaSGs~DGtIrIW----D~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
..+.|.++.|- .+.++.+..+|.|.+. +..+...+.+..+ ..+|.+++||||+..|+..+.++++.+-+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~- 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTR- 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence 45778888886 4479999999999999 7776655555544 678999999999999998888999887642
Q ss_pred CCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC--Cc--------------eeeeccCCCeEEEEEe-CCEE
Q 002389 722 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS--RT--------------LKDIYRSKGIKSMSVV-QGKI 784 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~--~~--------------~~~l~~~~~V~sla~s-dg~l 784 (929)
+......... ..-.......++++++..=.-+.-. +. ...+....+-..++|- ||.+
T Consensus 150 ~fd~i~E~~l------~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 150 DFDPISEVPL------DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred cceEEEEeec------CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 3322221111 1111111233333332211111100 00 0001122344567776 8885
Q ss_pred EEEE-C---C---CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec--CCCeEEEEECCCCC---e
Q 002389 785 YIGC-M---D---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHRKP---Q 852 (929)
Q Consensus 785 lsgs-~---D---g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~--dDgtI~IWDl~~~~---~ 852 (929)
++.+ - . ..+++|+-. |.....-.+ -.+.-..+++.|.+.++++... +...|.+|..++-+ .
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEP------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEecccc------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 5432 1 2 568888876 332221111 1233346677788877766543 33567888766533 1
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE--EEEe--CCCCeEEEEEc---CCEEEEEECCCcEEE
Q 002389 853 ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV--GRIS--AGSKITSLLTA---NDIVLCGTETGLIKG 925 (929)
Q Consensus 853 i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i--~tl~--~h~~Vtsvs~d---g~~LaSgs~DG~I~I 925 (929)
.-.+......|..+.|++|+..||..-.|. |++|...+.... +.+. ....+..+.|+ +..|..++.+|.+..
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 112223456899999999999999987665 999998886652 2333 22335558888 457777777777765
Q ss_pred ee
Q 002389 926 WI 927 (929)
Q Consensus 926 Wd 927 (929)
++
T Consensus 376 ~~ 377 (928)
T PF04762_consen 376 YD 377 (928)
T ss_pred EE
Confidence 43
No 279
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.00054 Score=79.22 Aligned_cols=260 Identities=10% Similarity=0.049 Sum_probs=151.2
Q ss_pred EEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCC--C--------cEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 656 IYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR--K--------AVT-SFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 656 ~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~--~--------~Vt-slafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+.++.++.++.+|.+.-+|..+++. +...+-.. . .+. .+.. ++..++.++.+|.+..+|..+|+
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKE--IWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcE--eeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 44588999999999999999998864 34332111 0 000 0111 35667788889999999999998
Q ss_pred EEEEEEeccCCCeEE-eccCCCEEEEEecCCeEEEEeCCC-cee-eeccCCC------eEEEEEeCCEEEEEECCCcEEE
Q 002389 725 LELIEVIATKEPIRK-LDTYGKTIFASTQGHRMKVIDSSR-TLK-DIYRSKG------IKSMSVVQGKIYIGCMDSSIQE 795 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s-~s~~g~~L~sgs~Dg~V~IWDl~~-~~~-~l~~~~~------V~sla~sdg~llsgs~Dg~I~i 795 (929)
........ ..+.+ -...+..+++++.++.+..+|... ... ....... ..+....++.++.++.+|.+..
T Consensus 142 ~~W~~~~~--~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 142 VAWQTKVA--GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred CcccccCC--CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEE
Confidence 65543322 22221 112356777888889999999862 211 1111111 1122234677888889999999
Q ss_pred EEccCCccceecccccccccC-----CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 002389 796 LAVSNNVEREIKAPFKSWRLQ-----SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~-----~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp 870 (929)
+|..+|+..-........... .....+-....+.++..+ .++.+..+|..+++.+-.... .....+. .
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA--V 292 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE--E
Confidence 999887642211000000000 000011112233444333 467899999988876543321 1111222 2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 871 DFIYLNYNSSASSLQIWLRGTQQKVGRISA--GSKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~--h~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
++..+..++.||.+..+|..+|+.+-+... +....+....+..++.++.||.+++.|.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence 456677778899999999999988765432 2223333345677888899999887764
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.16 E-value=0.001 Score=74.76 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=132.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe-cc----CCCeE--------Eec-cCCCEEEEEecCCeEEEEeCC-
Q 002389 698 SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI-AT----KEPIR--------KLD-TYGKTIFASTQGHRMKVIDSS- 762 (929)
Q Consensus 698 afspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~-~h----~~~V~--------s~s-~~g~~L~sgs~Dg~V~IWDl~- 762 (929)
..+.||+.++- +..|.|.++|..+.++...... .. +.+.. .++ .+|++++.+|.+. ..+.+..
T Consensus 273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-aFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-AFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-EEEECCCC
Confidence 34578888664 3467899999988775443322 11 11111 133 4678888887644 4555443
Q ss_pred CceeeeccCCCeEEEEEe-CC-EEEEEECCC-cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 763 RTLKDIYRSKGIKSMSVV-QG-KIYIGCMDS-SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 763 ~~~~~l~~~~~V~sla~s-dg-~llsgs~Dg-~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
+....+.+..+|+-..+. ++ .++.|..|| .+-++|..+++.+.+. ..-..|.++..++++.+.+... +.
T Consensus 351 ~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-------~~lg~I~av~vs~dGK~~vvaN-dr 422 (668)
T COG4946 351 GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-------KDLGNIEAVKVSPDGKKVVVAN-DR 422 (668)
T ss_pred CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-------CCccceEEEEEcCCCcEEEEEc-Cc
Confidence 344444555567666665 43 488899988 8999999998766553 3467889999999999877654 55
Q ss_pred CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCcEEE
Q 002389 840 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS----SLQIWLRGTQQKVG 896 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG----~I~IWdl~sg~~i~ 896 (929)
..+.+.|++++.....-....+-|+.+.|+|+++++|-+--+| .|+++|+.+++...
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 6888889999986665556667899999999999999876665 68999998877643
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=0.00026 Score=80.70 Aligned_cols=257 Identities=11% Similarity=0.057 Sum_probs=142.9
Q ss_pred EEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-----------CCeEEEE
Q 002389 652 VTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-----------DKTIGVW 718 (929)
Q Consensus 652 Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-----------DgtIrIW 718 (929)
=+-+.|| |.||+|-..-| |.+|--.+-. .++.+ .|+ .|.-+.|||+.+||+|-|. ...++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~--r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD--RIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHH--HHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 3567888 45888888776 6699776543 24555 566 4889999999999998653 2579999
Q ss_pred EccCCeEEEEEEe----ccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceee---eccCCCeEE---------------
Q 002389 719 QMVQRKLELIEVI----ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKD---IYRSKGIKS--------------- 776 (929)
Q Consensus 719 Dl~tg~~~~~~~~----~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~---l~~~~~V~s--------------- 776 (929)
|+.+|........ -..-|+..|+.++++++-... +.|.||+...-... .....+|..
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 9999976443332 122356678889998887765 56777775420000 000011111
Q ss_pred -----------EEEe----------------------CCEEEEEEC-----------CCcEEEEEccCCccceecccccc
Q 002389 777 -----------MSVV----------------------QGKIYIGCM-----------DSSIQELAVSNNVEREIKAPFKS 812 (929)
Q Consensus 777 -----------la~s----------------------dg~llsgs~-----------Dg~I~iwDl~tg~~~~i~~~~~~ 812 (929)
+.++ +|..+|.-. -..+.|+.++... .|+..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----Ipve~ 441 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----IPVEV 441 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-----CCcee
Confidence 1111 222221100 0011122111100 00000
Q ss_pred cccCCCCeEEEEEcCCceEEEEEec--CCCeEEEEECCCC----CeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCc
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHRK----PQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASS 883 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~--dDgtI~IWDl~~~----~~i~~l~~h~~~V~slafSpdg~~LaSgS---~DG~ 883 (929)
.. -..++..+++-|.+...+..+. ...++.+|..++. .++..+. ....+.+.|+|.|++++.+. ..|.
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccc
Confidence 00 0334455555565543333331 2246777776532 1222332 24567899999999998764 5689
Q ss_pred EEEEECCCCcEE-EEEeCCCCeEEEEEc--CCEEEEEECCCc
Q 002389 884 LQIWLRGTQQKV-GRISAGSKITSLLTA--NDIVLCGTETGL 922 (929)
Q Consensus 884 I~IWdl~sg~~i-~tl~~h~~Vtsvs~d--g~~LaSgs~DG~ 922 (929)
+.++|....... .....|...+.+.|| |+++++++.-++
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 999998743322 222234446667777 889999887544
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.15 E-value=0.00022 Score=74.92 Aligned_cols=228 Identities=9% Similarity=-0.087 Sum_probs=141.3
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCeEEEEEEec-cCCC
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIA-TKEP 736 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrIWDl~tg~~~~~~~~~-h~~~ 736 (929)
.++||.||.-|...+|...+.+. ..+....|...|+-+.=..+.+ .+.-++.|.++++.+++.+......... ...-
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 45899999999999999987653 3444455555554332222333 2777889999999998765432211111 1111
Q ss_pred eEEeccCCCEEEEEecCCeEEEEeCCCceeee------ccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCcc-ceec
Q 002389 737 IRKLDTYGKTIFASTQGHRMKVIDSSRTLKDI------YRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVE-REIK 807 (929)
Q Consensus 737 V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l------~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~-~~i~ 807 (929)
-.++++++++.++++....|..|.+++....+ .....-.+..|+ +..++++..||++.+||++.... ....
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 12478999999999999999999987432211 113344566676 55689999999999999987432 1111
Q ss_pred ccccccccCCCCeEEEEEcCCceEE-EEEecCCCeEEEEECCCCCeEEEec-------CCC-CCeEEEEEecCCCEEEEE
Q 002389 808 APFKSWRLQSKPINSLVVYKDWLYS-ASSSVEGSNIKEWRRHRKPQISIAP-------EKG-TTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 808 ~~~~~~~~~~~~I~sl~~~~d~i~~-~s~S~dDgtI~IWDl~~~~~i~~l~-------~h~-~~V~slafSpdg~~LaSg 878 (929)
. ..-..|.+.+..+.+++.+..- +-++-.-+.+++-|++++.-.+... .|. ..|..-.|+.++.-+.+.
T Consensus 243 s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 243 S--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred c--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 1 1123478889999998665442 3333234688999988876443322 222 347777777766555544
Q ss_pred eCCCcEEEEECC
Q 002389 879 SSASSLQIWLRG 890 (929)
Q Consensus 879 S~DG~I~IWdl~ 890 (929)
+++ .+.=|++.
T Consensus 321 ~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 321 NEL-QGAEYNIL 331 (344)
T ss_pred cch-hhheeecc
Confidence 433 23344443
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=8.1e-05 Score=88.17 Aligned_cols=183 Identities=11% Similarity=0.029 Sum_probs=126.1
Q ss_pred CCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 649 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
.+.++|+++++..++-|.-+|.|++.+..... .+...|... ..+|.+++|||.||+|.|-.+.+++..+.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 56788999999999999999999999988642 333455544 56899999999999999999888765443
Q ss_pred EEeccCCCeEE--eccC-----CCEEEEEecCCeEEEEeCC--Cce--eee-ccCCCeEEEEEeCCEEEEEECCCcEEEE
Q 002389 729 EVIATKEPIRK--LDTY-----GKTIFASTQGHRMKVIDSS--RTL--KDI-YRSKGIKSMSVVQGKIYIGCMDSSIQEL 796 (929)
Q Consensus 729 ~~~~h~~~V~s--~s~~-----g~~L~sgs~Dg~V~IWDl~--~~~--~~l-~~~~~V~sla~sdg~llsgs~Dg~I~iw 796 (929)
. ..+.++.+ ++|+ .+.+++|+.-| +.++.-+ +.. ... ...+.|.++.|.. .+++-..|-.|++|
T Consensus 109 ~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g-~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 109 Y--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG-NLIAWANDDGVKVY 184 (846)
T ss_pred E--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC-cEEEEecCCCcEEE
Confidence 3 34445554 4454 45788888888 7777544 211 112 2356688988864 45555566668999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
|..+++.....++.+...........+.+.++....++|+ .+|++..++
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEe
Confidence 9988766544333222222233445677778888888885 478888766
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.11 E-value=0.00099 Score=74.80 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=89.9
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCC-eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDG-SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DG-tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+|.+.|.-..+. +.-++.|..|| .+-|+|..+++ +..+.+.-+.|.++..+|+|++++.+.....+.+.|+++|
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 788899999987 45899999999 99999999986 4556677789999999999999999998889999999999
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCC----eEEEEeCCC
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGH----RMKVIDSSR 763 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg----~V~IWDl~~ 763 (929)
+.... ......-|+. |++++++++-+-.+| .|++||+.+
T Consensus 434 nv~~i-dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 434 NVRLI-DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CeeEe-cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 85322 2222334554 577888888886665 788999874
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.11 E-value=0.00078 Score=71.96 Aligned_cols=223 Identities=14% Similarity=0.083 Sum_probs=125.2
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC---cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc--
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK---AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT-- 733 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~---~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h-- 733 (929)
+|.+++.-.|..|.|=..++.-...+.+.+-+++ .=.-++|+||+..||.+...|+|+++|+....+. .....+
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccccc
Confidence 6677777788888887776532222233322222 2457899999999999999999999999654332 221111
Q ss_pred ----CCCeEEe---ccC-----CCEEEEEecCCeEEEEeCC----C---ceeeec----cCCCeEEEEEeCCE--EEEEE
Q 002389 734 ----KEPIRKL---DTY-----GKTIFASTQGHRMKVIDSS----R---TLKDIY----RSKGIKSMSVVQGK--IYIGC 788 (929)
Q Consensus 734 ----~~~V~s~---s~~-----g~~L~sgs~Dg~V~IWDl~----~---~~~~l~----~~~~V~sla~sdg~--llsgs 788 (929)
...|..+ ... ...+++...+|.++-|-+. + ....+. ...+|.++.++.++ +++|+
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 1223222 111 2357777788877777642 1 111211 14578899998443 44444
Q ss_pred -CCCcEEEEEccCCccceecccccccccCCCCeEEEEE---cCCceEEEEEecCCC------eEEEEECCCCCeEEEecC
Q 002389 789 -MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV---YKDWLYSASSSVEGS------NIKEWRRHRKPQISIAPE 858 (929)
Q Consensus 789 -~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~---~~d~i~~~s~S~dDg------tI~IWDl~~~~~i~~l~~ 858 (929)
....-..+.. ....+++... .|......+. +++ +-.+|.+-+.........
T Consensus 167 ~~~~~~~~s~a-----------------~~~GLtaWRiL~~~Pyyk~v~~~--~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 167 CEQNQDGMSKA-----------------SSCGLTAWRILSDSPYYKQVTSS--EDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred cCCCCCccccc-----------------cccCceEEEEcCCCCcEEEcccc--Cccccccccccceeeccceeeeecccc
Confidence 3332100000 0111122111 1222221111 111 223444333322222233
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
....|..|..||||..||+...+|.|.+|++.+....+.+..+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 4568999999999999999999999999999988877766543
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=9.9e-06 Score=87.43 Aligned_cols=166 Identities=10% Similarity=0.089 Sum_probs=115.8
Q ss_pred cCCCEEEEEecCCeEEEEeCCCc-eeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCCC
Q 002389 742 TYGKTIFASTQGHRMKVIDSSRT-LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK 818 (929)
Q Consensus 742 ~~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~ 818 (929)
..+.. ++++.+..+-+-|+... .+.+.....|.+..|. +.-++.|+..|.|..+|++.+.........+ -.|..
T Consensus 223 i~gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~S 299 (425)
T KOG2695|consen 223 IMGYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHDS 299 (425)
T ss_pred cceee-ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcCc
Confidence 34444 66667777888888743 3344445668888886 4558889999999999998752211111001 23567
Q ss_pred CeEEEEEcC-CceEEEEEecCCCeEEEEECCCCCe---EEEecCCCCCeEEE--EEecCCCEEEEEeCCCcEEEEECCCC
Q 002389 819 PINSLVVYK-DWLYSASSSVEGSNIKEWRRHRKPQ---ISIAPEKGTTIQAM--AVVEDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 819 ~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~~~~~---i~~l~~h~~~V~sl--afSpdg~~LaSgS~DG~I~IWdl~sg 892 (929)
.|++++.-. +..++++.+ .+|+|++||.+.-+. +..+.||...-..+ -..+....+++++.|...+||.+.+|
T Consensus 300 svtslq~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASD-MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred chhhhhhhccccceEeecc-CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 777777765 555555544 678999999876555 88899996643333 33567788999999999999999999
Q ss_pred cEEEEEeCCCC-----eEEEEEcC
Q 002389 893 QKVGRISAGSK-----ITSLLTAN 911 (929)
Q Consensus 893 ~~i~tl~~h~~-----Vtsvs~dg 911 (929)
..+.+++.... +.++++++
T Consensus 379 hLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 379 HLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ceeeccCCCCccccccccceehhc
Confidence 99999986632 66677763
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00037 Score=74.29 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=87.5
Q ss_pred CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeE-EEecCC
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQI-SIAPEK 859 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i-~~l~~h 859 (929)
.+++++-.+|.+.+.+........+ +.|+.|.-+.....++......+-.+.+|+.+..||++ .+..+ +....|
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le~v----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLEKV----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeeeec----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceee
Confidence 3477788888888666554433332 57888888888888774433333334489999999987 33333 335568
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCcEEEEECC-CCcEEEEEeCCCCeEEEEEc
Q 002389 860 GTTIQAMAVVE-DFIYLNYNSSASSLQIWLRG-TQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 860 ~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~-sg~~i~tl~~h~~Vtsvs~d 910 (929)
...|.+|.-+| .+.+|++|+.|..|++||.+ -++++..-...+.|+.+.+.
T Consensus 210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHH 262 (339)
T ss_pred ecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEec
Confidence 88899998885 68899999999999999977 56776655545556665543
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.05 E-value=1.1e-05 Score=60.68 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=35.9
Q ss_pred CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 851 PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 851 ~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
+++..+.+|...|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.04 E-value=3.7e-05 Score=84.75 Aligned_cols=90 Identities=8% Similarity=0.070 Sum_probs=72.2
Q ss_pred CCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCC-eEEEEE-cCCEE
Q 002389 838 EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-GSK-ITSLLT-ANDIV 914 (929)
Q Consensus 838 dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~-h~~-Vtsvs~-dg~~L 914 (929)
+...+.+|....+. ....-||-..++.++|+||+++|+++..|+.|+|-....-..+.++.- |.. |..++. +++.|
T Consensus 130 D~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~L 208 (390)
T KOG3914|consen 130 DVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLL 208 (390)
T ss_pred CceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCcee
Confidence 44566777766544 334568999999999999999999999999999988777666777764 533 888885 46788
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
++||.|++|++||+
T Consensus 209 lS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDI 222 (390)
T ss_pred eecCCCCcEEEEec
Confidence 99999999999986
No 290
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0011 Score=77.70 Aligned_cols=211 Identities=8% Similarity=-0.088 Sum_probs=112.6
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCe--EEeccCCCE--EE-EEecCC--eEEEEeCCCc-eeeecc-CCCeEEEEEe-CC
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPI--RKLDTYGKT--IF-ASTQGH--RMKVIDSSRT-LKDIYR-SKGIKSMSVV-QG 782 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~~g~~--L~-sgs~Dg--~V~IWDl~~~-~~~l~~-~~~V~sla~s-dg 782 (929)
+.|.+.|.+.+....... ..... -.|+|+|+. ++ +...+| .|.+.++.+. ...+.. ........|+ ||
T Consensus 165 ~~l~~~d~dG~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 356777776554322211 22222 268999875 32 333333 6777787632 222222 2334456776 77
Q ss_pred E-EEEEE-CCC----cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEE--ECCC-CCeE
Q 002389 783 K-IYIGC-MDS----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW--RRHR-KPQI 853 (929)
Q Consensus 783 ~-llsgs-~Dg----~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IW--Dl~~-~~~i 853 (929)
+ ++..+ .+| .+..|++..+..... .++............++|++..++..+..++...+| +... +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~---~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKP---RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcc---eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 5 54433 222 344466655321110 011112222345678899988766555345544444 4432 2223
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEE--EcCCEEEEE-ECC--CcEEE
Q 002389 854 SIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQQKVGRISAGSKITSLL--TANDIVLCG-TET--GLIKG 925 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg~~LaSgS~D---G~I~IWdl~sg~~i~tl~~h~~Vtsvs--~dg~~LaSg-s~D--G~I~I 925 (929)
..+..+...+....|||||++|+..+.+ ..|++||+.+++...-......+.+.. +||+.|+.. ..+ +.|++
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 4444455567789999999999876543 469999998887643332222344444 457776643 333 45666
Q ss_pred eec
Q 002389 926 WIP 928 (929)
Q Consensus 926 Wdi 928 (929)
|++
T Consensus 400 vdl 402 (428)
T PRK01029 400 ISL 402 (428)
T ss_pred EEC
Confidence 653
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=0.00098 Score=85.98 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=116.3
Q ss_pred CEEEEEEe--CCEEEEE-ECCCeEEEEECCCCCeeEEEEeccC-----------------CCcEEEEEEcCC-CCEEEEE
Q 002389 651 AVTALIYY--KGLLCSG-FSDGSIKMWDIKKQSAMLVWDVKEH-----------------RKAVTSFSLFEP-GESLLSG 709 (929)
Q Consensus 651 ~Vtsl~fs--~~~LaSG-s~DGtIrIWD~~~~~~~~i~~l~gH-----------------~~~Vtslafspd-g~~LaSg 709 (929)
.-..++++ ++.|+.+ ..++.|+++|..++. +.++.+- -...++++|+|+ +..+++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 35778887 4555444 456789999988764 3333210 112457899994 5556777
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-CCE-EE-E
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IY-I 786 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~-ll-s 786 (929)
+.++.|++||..++...... .+|.... .++. ......-.....++++ +|. ++ +
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~------------G~G~~~~---~~g~---------~~~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFS------------GDGYERN---LNGS---------SGTSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEe------------cCCcccc---CCCC---------ccccccccCccEEEEeCCCCEEEEE
Confidence 78899999999877532111 0000000 0000 0000000112233333 222 22 2
Q ss_pred EECCCcEEEEEccCCccceeccc-----c---ccc-------ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 002389 787 GCMDSSIQELAVSNNVEREIKAP-----F---KSW-------RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 851 (929)
Q Consensus 787 gs~Dg~I~iwDl~tg~~~~i~~~-----~---~~~-------~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~ 851 (929)
-+.++.|++||+.++....+... . ... .........+.+.+++...++-+ .+++|++||..++.
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~ 836 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKR 836 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCe
Confidence 22334444444443221100000 0 000 00012234677777765444443 67899999998876
Q ss_pred eEEEec-------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE
Q 002389 852 QISIAP-------------EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 852 ~i~~l~-------------~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~ 894 (929)
...... ++-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 543321 1112577899999999999999999999999988765
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0035 Score=73.07 Aligned_cols=208 Identities=14% Similarity=0.014 Sum_probs=119.5
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeC---CCeEEEEEccCCeEEEEEEeccCCCeEEeccCC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSA---DKTIGVWQMVQRKLELIEVIATKEPIRKLDTYG 744 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~---DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g 744 (929)
..|.+=|.+.... +.+... +.+....|+|||+. ++..+. +..|.++|+.+|+...............|+|+|
T Consensus 169 ~~l~~~d~dg~~~---~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQ---KVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCce---eEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCC
Confidence 3555556655432 222222 37788999999985 554333 356889999888754433221112234689999
Q ss_pred CEEEEEe-cC--CeEEEEeCCC-ceeeeccCCC-eEEEEEe-CCE-EEEEE-CCC--cEEEEEccCCccceecccccccc
Q 002389 745 KTIFAST-QG--HRMKVIDSSR-TLKDIYRSKG-IKSMSVV-QGK-IYIGC-MDS--SIQELAVSNNVEREIKAPFKSWR 814 (929)
Q Consensus 745 ~~L~sgs-~D--g~V~IWDl~~-~~~~l~~~~~-V~sla~s-dg~-llsgs-~Dg--~I~iwDl~tg~~~~i~~~~~~~~ 814 (929)
+.++... .+ ..|.++|+.. ....+..... .....|+ ||+ ++..+ ..+ .|+++|+.++....+. +.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-----~~ 319 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-----FH 319 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-----cC
Confidence 8776543 33 4788888763 3344433332 2344576 775 55444 233 5778888776653331 11
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCC--------CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--c
Q 002389 815 LQSKPINSLVVYKDWLYSASSSVEG--------SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-S--S 883 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~i~~~s~S~dD--------gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D-G--~ 883 (929)
+.. ...++|++..++-.+..+ ..|.+.|+.++... .+.... ......|+|||+.|+..+.+ + .
T Consensus 320 --g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 320 --GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-VNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred --CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-CcCCeEECCCCCEEEEEEccCCcEE
Confidence 111 237788888765544332 36888898888753 333332 23358899999988766533 2 3
Q ss_pred EEEEECCC
Q 002389 884 LQIWLRGT 891 (929)
Q Consensus 884 I~IWdl~s 891 (929)
+.+.++..
T Consensus 394 L~~~~l~g 401 (419)
T PRK04043 394 LGIIRLNY 401 (419)
T ss_pred EEEEecCC
Confidence 45555533
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=0.00023 Score=82.85 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=144.4
Q ss_pred cCCCCCCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..||++.|.-+.|+++ .|-|+..+|.|.||-+-.++.-.-..-....+.|.+++|+.||..++..-.||.|.|=.++.
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 3499999999999933 68899999999999998775411011123456789999999999988888888887777655
Q ss_pred CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCce---------eeecc-----CCCeEEEEEe--------
Q 002389 723 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL---------KDIYR-----SKGIKSMSVV-------- 780 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~---------~~l~~-----~~~V~sla~s-------- 780 (929)
.+.--....+..-.-..++++...++.+-.+|.+++||..+.. ....+ +..+..+.|.
T Consensus 147 NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 147 NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCC
Confidence 4321111111111223477888888888889999999977321 11111 2224445542
Q ss_pred -CC-EEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEec-------CC-CeEEEEECCC
Q 002389 781 -QG-KIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV-------EG-SNIKEWRRHR 849 (929)
Q Consensus 781 -dg-~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~-------dD-gtI~IWDl~~ 849 (929)
+. .++.+-..|.+++..-.+... ..+. .+-.+....+++++..++..+. .| +.|.+|. .-
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~ 297 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PY 297 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cc
Confidence 11 255555666666554433221 1111 1233445556666655443331 22 3555554 34
Q ss_pred CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 850 KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 850 ~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
|..+.+++..+..|++++|-..|-.++.+- |+.|++=+
T Consensus 298 G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred hhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 666788888888999999987777666553 66665543
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.98 E-value=0.0019 Score=80.00 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=134.8
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
++.|.++.|. ++.++.+..+|.|.+-|..+.....+. .-.++|.+++|+||++.++-.+.++++.+-+- +-.++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence 4789999998 568999999999999999887644333 34678999999999999888887888766432 11111
Q ss_pred EEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC----------Ccee---eeccCCCeEEEEEe-CCEEEEE-----
Q 002389 727 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS----------RTLK---DIYRSKGIKSMSVV-QGKIYIG----- 787 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~----------~~~~---~l~~~~~V~sla~s-dg~llsg----- 787 (929)
..... +. ...+ ....+.++++..=.-+... ...+ ....+..-.++.|- ||++++.
T Consensus 144 ~E~~L-~~----d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 144 AEKPL-DA----DDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred hcccc-cc----cccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 11100 00 0000 1122333332211111110 0000 00112334567887 8875554
Q ss_pred ECC-CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCCCC---eEEEecCCCC
Q 002389 788 CMD-SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHRKP---QISIAPEKGT 861 (929)
Q Consensus 788 s~D-g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S--~dDgtI~IWDl~~~~---~i~~l~~h~~ 861 (929)
..+ ..|++||-. |.....-. .....-.++.+-|.+...++.. ++++.|.+|..++-. ....+.....
T Consensus 218 ~~~~RkirV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred cCCceeEEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 245 789999987 33322211 1133345677777776665543 456689999876533 2222333334
Q ss_pred CeEEEEEecCCCEEEE---EeCCCcEEEEECCCCcE
Q 002389 862 TIQAMAVVEDFIYLNY---NSSASSLQIWLRGTQQK 894 (929)
Q Consensus 862 ~V~slafSpdg~~LaS---gS~DG~I~IWdl~sg~~ 894 (929)
.|..++|+.++..|+. ......|++|-..+...
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 5899999999999987 44455599998876543
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.95 E-value=9.2e-05 Score=81.73 Aligned_cols=85 Identities=11% Similarity=0.115 Sum_probs=68.5
Q ss_pred cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~-i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
..+|-..+..++++||..++++.. .|..|++-....-.. -...-||...|..++.-++. .|+|||.|+++++||+.+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEeccc
Confidence 357888999999999998888766 667888877554433 34556899999999988654 489999999999999999
Q ss_pred CcEEEEEe
Q 002389 892 QQKVGRIS 899 (929)
Q Consensus 892 g~~i~tl~ 899 (929)
|+.+.++.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 99887665
No 296
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.91 E-value=0.00021 Score=77.33 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCC------------C---eEEEEEecCCCEEEEEeCC
Q 002389 818 KPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGT------------T---IQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~------------~---V~slafSpdg~~LaSgS~D 881 (929)
..|..+.+++++.|+++-+ =-++++||++ ...++.++.-|.. . -..++|+.++.+++|||..
T Consensus 273 sSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred hhhhceEEccCCcEEEEec--cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc
Confidence 4677889999999998753 3689999973 3444555555532 2 2457899999999999999
Q ss_pred CcEEEEECCCC
Q 002389 882 SSLQIWLRGTQ 892 (929)
Q Consensus 882 G~I~IWdl~sg 892 (929)
+..++|+...|
T Consensus 351 n~frvf~~~~g 361 (433)
T KOG1354|consen 351 NVFRVFNLARG 361 (433)
T ss_pred ceEEEecCCCC
Confidence 99999995544
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0026 Score=76.36 Aligned_cols=217 Identities=12% Similarity=0.160 Sum_probs=130.1
Q ss_pred CEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCe-----EEEEEccCCe
Q 002389 651 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-VTSFSLFEPGESLLSGSADKT-----IGVWQMVQRK 724 (929)
Q Consensus 651 ~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~-Vtslafspdg~~LaSgs~Dgt-----IrIWDl~tg~ 724 (929)
.|+|+.-+++.++.|+.||.|.+.+-.-. .++.++.+... |+.+....+..+|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~---~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQ---LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccce---eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 77777777889999999999988876542 35778888887 555544444457888877654 8999986421
Q ss_pred EEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-C-CEEEEEECCCcEEEEEccCCc
Q 002389 725 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-Q-GKIYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-d-g~llsgs~Dg~I~iwDl~tg~ 802 (929)
. ...| .++ +..+++-.... ....++.+++++ + ..+++|-.+|.|..+.-.--+
T Consensus 104 ~-------n~sP-~c~-------------~~~ri~~~~np----~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 104 K-------NNSP-QCL-------------YEHRIFTIKNP----TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred C-------CCCc-cee-------------eeeeeeccCCC----CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 0 0000 000 00011110000 012334555555 2 236666677777666322111
Q ss_pred cceecccccccccCCCCeEEEEEcCCceE--EEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWLY--SASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i~--~~s~S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
....+ .......+.+|+.+.+..++.. .++. -..|..|.+.+.. .......|+..++|..+++....+++++
T Consensus 159 Drgsr--~~~~~~~~~pITgL~~~~d~~s~lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 159 DRGSR--QDYSHRGKEPITGLALRSDGKSVLFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred ccccc--eeeeccCCCCceeeEEecCCceeEEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence 11110 0111234778999998877654 2222 3478999987555 3455778888999999987655344444
Q ss_pred CCCcEEEEECCCCcEEEEEe-CC
Q 002389 880 SASSLQIWLRGTQQKVGRIS-AG 901 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~-~h 901 (929)
+..+.+|+.....+-.++. +|
T Consensus 234 -~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 234 -SEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred -CceEEEEcCCCcceeeeecCCC
Confidence 5679999988777777887 44
No 298
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.01 Score=64.86 Aligned_cols=229 Identities=17% Similarity=0.153 Sum_probs=135.9
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE---------
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE--------- 729 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~--------- 729 (929)
++.|+.|..+| +.+++..... ...... +..+|..+...|+-+.++.-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 67899999999 8999993221 112222 333499999999888776665 699999998753322110
Q ss_pred ----EeccCCCeEEec----cCCCEEEEEecCCeEEEEeCCCc-------eeeeccCCCeEEEEEeCCEEEEEECCCcEE
Q 002389 730 ----VIATKEPIRKLD----TYGKTIFASTQGHRMKVIDSSRT-------LKDIYRSKGIKSMSVVQGKIYIGCMDSSIQ 794 (929)
Q Consensus 730 ----~~~h~~~V~s~s----~~g~~L~sgs~Dg~V~IWDl~~~-------~~~l~~~~~V~sla~sdg~llsgs~Dg~I~ 794 (929)
.......+..+. ..+...+++.....|.+|.+... .+.+.-...+.++.|.++.++.|..++ ..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FY 160 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eE
Confidence 112223344454 33445555566668888877632 233344677889999988877777554 78
Q ss_pred EEEccCCccceecccccc------cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE-EEecCCCCCeEEEE
Q 002389 795 ELAVSNNVEREIKAPFKS------WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI-SIAPEKGTTIQAMA 867 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~------~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i-~~l~~h~~~V~sla 867 (929)
+.|+.++....+..+... ......++..+.... ..+++++. ..-.+.|..+.... ..+.- .....+++
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~---~~g~fv~~~G~~~r~~~i~W-~~~p~~~~ 235 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYD---NIGVFVNKNGEPSRKSTIQW-SSAPQSVA 235 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEec---ceEEEEcCCCCcCcccEEEc-CCchhEEE
Confidence 889987665544321110 011123444444443 35555542 23334444333221 12211 23455666
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
+. ..|++..+. +.|.||++.+++.++++...
T Consensus 236 ~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 236 YS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 63 457777765 55999999999999999865
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.88 E-value=0.01 Score=63.76 Aligned_cols=202 Identities=11% Similarity=0.031 Sum_probs=126.2
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE-EeccCCCEEEEEecCCeEEEEeCCC-ceeeecc--
Q 002389 696 SFSLFE-PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR-KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-- 770 (929)
Q Consensus 696 slafsp-dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~-s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~-- 770 (929)
+..|.+ ++..+++--..+.|..|+..++........ .+.- .+...+..++.+..++ +.++|... ....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567888 555566666789999999988764332222 2333 2342446666666544 45558663 2222221
Q ss_pred -----CCCeEEEEEe-CCEEEEEECC---------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 771 -----SKGIKSMSVV-QGKIYIGCMD---------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 771 -----~~~V~sla~s-dg~llsgs~D---------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
....+.+++. +|.++++... |.+..++.. ++.... ...-...+.+.+++++..+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-------~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-------ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-------EEEESSEEEEEEETTSSEEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-------ecCcccccceEECCcchheeec
Confidence 2347788887 8887776542 456666666 332222 1123456789999988655444
Q ss_pred ecCCCeEEEEECCC--CCe-----EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEE
Q 002389 836 SVEGSNIKEWRRHR--KPQ-----ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSL 907 (929)
Q Consensus 836 S~dDgtI~IWDl~~--~~~-----i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsv 907 (929)
....+.|..|+.+. ... ...+....+..-.+++..+|++.++....+.|.+++.+ |+.+..+... ..++++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 44667888888753 311 11222222347789999999999988889999999987 9999888877 569999
Q ss_pred EEc
Q 002389 908 LTA 910 (929)
Q Consensus 908 s~d 910 (929)
+|.
T Consensus 231 ~fg 233 (246)
T PF08450_consen 231 AFG 233 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 300
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.85 E-value=0.0006 Score=90.41 Aligned_cols=304 Identities=13% Similarity=0.116 Sum_probs=198.4
Q ss_pred HHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc
Q 002389 132 VEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN 211 (929)
Q Consensus 132 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~ 211 (929)
-.+..+|..+.++++....+..-..|.-|++.|..+ ++++++.++..|.-+...++..++.|.+.| -+.++..+|+++
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaG-aIP~LV~LL~s~ 500 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAG-GIPPLVQLLETG 500 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHcCC
Confidence 355666666666555555566666788899988876 679999999998999889999999999887 899999999874
Q ss_pred ---ch-hhHHHHHhcCCCchh----hhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccc------
Q 002389 212 ---VP-EAAILIYLIKPSPTE----IKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYA------ 277 (929)
Q Consensus 212 ---~~-~~~vl~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~------ 277 (929)
+. +|+.-+.=|--...| +.+..-+|.|+++|.+++... +.-|...|-.|+.+.|..
T Consensus 501 ~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~----------q~~Aa~AL~nLi~~~d~~~I~~Lv 570 (2102)
T PLN03200 501 SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG----------QEIAAKTLTKLVRTADAATISQLT 570 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH----------HHHHHHHHHHHHhccchhHHHHHH
Confidence 44 655555544322322 335689999999999875331 122333333332221110
Q ss_pred -------cc-hhh-hhh-----------------hchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhh
Q 002389 278 -------TN-NMH-LAA-----------------INSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEF 331 (929)
Q Consensus 278 -------~~-~~~-~~~-----------------~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~ 331 (929)
.+ ..+ +.. ....++|+.|.+-++.|+.+.|..|+.+|.....-....+..+...
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 00 011 000 1135799999999999999999999999986665555545556667
Q ss_pred cCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccc
Q 002389 332 TAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTL 411 (929)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l 411 (929)
=-..|++++|.+++...+..|-.-|.-|..-.+. .+.... -+.|++-. |.-.|.....+-.-.++.-|- -++
T Consensus 651 gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~-v~~GaV~p---L~~LL~~~d~~v~e~Al~ALa--nLl 722 (2102)
T PLN03200 651 EIINPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSY-AAEDAIKP---LIKLAKSSSIEVAEQAVCALA--NLL 722 (2102)
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHH-HHcCCHHH---HHHHHhCCChHHHHHHHHHHH--HHH
Confidence 7799999999999877777776666666653332 222222 34666555 444444443332222222221 133
Q ss_pred cCCCCC-CcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCcccc
Q 002389 412 ENTTGK-SVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFS 456 (929)
Q Consensus 412 ~~~~~~-s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs 456 (929)
.+|... .+-++.++..|++-|++. +++.+..||.||..|.=+|+
T Consensus 723 ~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 723 SDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred cCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCC
Confidence 455433 334578899999999876 68889999999988887776
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.85 E-value=0.0056 Score=77.85 Aligned_cols=268 Identities=13% Similarity=0.105 Sum_probs=156.8
Q ss_pred CCEEEEEEe---CC-EEEEEECCC--eEEEEECCCCC-eeEEEEec-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 002389 650 GAVTALIYY---KG-LLCSGFSDG--SIKMWDIKKQS-AMLVWDVK-----EHRKAVTSFSLFEPGESLLSGSADKTIGV 717 (929)
Q Consensus 650 ~~Vtsl~fs---~~-~LaSGs~DG--tIrIWD~~~~~-~~~i~~l~-----gH~~~Vtslafspdg~~LaSgs~DgtIrI 717 (929)
..+...+|. +. +++++..+. .|.+....... ...+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356666776 22 344444443 34444443322 12344443 33568999999999999999999999999
Q ss_pred E----EccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCC-ceeeeccCCCeEEEEEeCCEEEEEECC
Q 002389 718 W----QMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYRSKGIKSMSVVQGKIYIGCMD 790 (929)
Q Consensus 718 W----Dl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~~~~V~sla~sdg~llsgs~D 790 (929)
. +..+...+..- .....|. +|+||+..++.++.++++.+.+.+- .+.... +..-.+..++.++.|+.
T Consensus 102 ~~~~~~~~~~~~E~VG--~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~----l~~~~~~~~~~VsVGWG 175 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVG--SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVP----LDSDDFGESKHVSVGWG 175 (928)
T ss_pred EEccCCCCCceeEEEE--EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEee----cCccccCCCceeeeccC
Confidence 9 66665544433 3444555 5899999999999999988876441 110000 00011112334444444
Q ss_pred CcEEEEEccCCccce--ecccc------cccccCCCCeEEEEEcCCceEEEEEec---CC--CeEEEEECCCCCeEEEec
Q 002389 791 SSIQELAVSNNVERE--IKAPF------KSWRLQSKPINSLVVYKDWLYSASSSV---EG--SNIKEWRRHRKPQISIAP 857 (929)
Q Consensus 791 g~I~iwDl~tg~~~~--i~~~~------~~~~~~~~~I~sl~~~~d~i~~~s~S~---dD--gtI~IWDl~~~~~i~~l~ 857 (929)
..=..|.-+.|+... ...|. .... ....-..+.+-.|+.|.+..+. .+ ..+++|+.+ |.+..+..
T Consensus 176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE 253 (928)
T PF04762_consen 176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE 253 (928)
T ss_pred cccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc
Confidence 433333322222100 00010 0111 2334557888888888766553 33 589999987 55444443
Q ss_pred CCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCcEEEEEeC-----CCCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 858 EKGTTIQAMAVVEDFIYLNYNSS---ASSLQIWLRGTQQKVGRISA-----GSKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 858 ~h~~~V~slafSpdg~~LaSgS~---DG~I~IWdl~sg~~i~tl~~-----h~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
.-.+--.+++|.|.|.+||+... ...|.+|..+ |-.-..|.- ...|..+.|+ ++.|+....|. |++|-
T Consensus 254 ~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 254 PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 33333457899999999998864 3556677653 333333332 2348889997 67888877666 99995
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.82 E-value=0.00021 Score=74.97 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=114.7
Q ss_pred EEEEEEe-CCEEEEEECCCeEEEEECCCCCe----------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 652 VTALIYY-KGLLCSGFSDGSIKMWDIKKQSA----------MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 652 Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~----------~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
|+.+.+. +..|+++..++.+......++.+ .+.+.+..|+++-.+-+.+-.++.+++++.||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 6666666 44788888877666554433221 134444455554444344445667999999999999998
Q ss_pred cCCeEEEEEEeccCCCeE-------EeccCCCEEEEEec-----CCeEEEEeCCCceeeec---cCCCeEEEEEe--CC-
Q 002389 721 VQRKLELIEVIATKEPIR-------KLDTYGKTIFASTQ-----GHRMKVIDSSRTLKDIY---RSKGIKSMSVV--QG- 782 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~-------s~s~~g~~L~sgs~-----Dg~V~IWDl~~~~~~l~---~~~~V~sla~s--dg- 782 (929)
+.-. ...++.++. ++-.+++.+.++.- -+..+.|+.+....... ..+.|.+++.+ ..
T Consensus 119 ~~~~-----~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 119 DKDL-----ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred hHHH-----hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence 6511 111222222 22334444444321 23456666653222111 23447777775 33
Q ss_pred EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCC
Q 002389 783 KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRK 850 (929)
Q Consensus 783 ~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~ 850 (929)
.+++|+.||.+.+||.+.. -.|...+..|..++..+.|||... .+.+.+ +||.+.-||..+.
T Consensus 194 ~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~~ 256 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDASTT 256 (319)
T ss_pred EEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCCc
Confidence 3778999999999999885 234466778899999999997633 344444 8899999998753
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.0026 Score=75.29 Aligned_cols=83 Identities=17% Similarity=0.146 Sum_probs=64.8
Q ss_pred CCCCCEEEEEEeC----------C----EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC---C-CEEEE
Q 002389 647 KCSGAVTALIYYK----------G----LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP---G-ESLLS 708 (929)
Q Consensus 647 gH~~~Vtsl~fs~----------~----~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd---g-~~LaS 708 (929)
-|...|+.|.|.+ . .||++.-.|.|.+||...+.. +..++.|.++|..++|-+. . ..|+.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~Lla 130 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLA 130 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEE
Confidence 6889999999951 1 578888899999999998753 6678889999999999763 3 34666
Q ss_pred EeCCCeEEEEEccCCeEEEEEEe
Q 002389 709 GSADKTIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~ 731 (929)
-....++.+|+..+|+.......
T Consensus 131 Ih~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 131 IHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred ecCCcEEEEEEccCCceeecccc
Confidence 66688999999999986544333
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0012 Score=73.21 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=65.7
Q ss_pred ecCCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEE
Q 002389 644 ASHKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQ 719 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWD 719 (929)
..++|...|..++|+ .|++..++.+.+|+|.|+++... +..+..| ..+++++|.-|... |+.|...|.|.|||
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccccee--eeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 455889999999998 45899999999999999998754 5666666 78999999987665 88888999999999
Q ss_pred ccCCe
Q 002389 720 MVQRK 724 (929)
Q Consensus 720 l~tg~ 724 (929)
++..+
T Consensus 265 ~R~~~ 269 (463)
T KOG1645|consen 265 MRQPE 269 (463)
T ss_pred ccCCC
Confidence 98754
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=1.6e-05 Score=93.96 Aligned_cols=198 Identities=13% Similarity=-0.001 Sum_probs=128.8
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEecc--CCCEEEEEecC-C-eEEE
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDT--YGKTIFASTQG-H-RMKV 758 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~--~g~~L~sgs~D-g-~V~I 758 (929)
...++..|+...+|++|+.+.++|+.|+..|.|+++++.+|. ......+|..+++.+.| +|...++.+.. . -..+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 356778899999999999999999999999999999999987 34556689999998764 56665555433 3 5678
Q ss_pred EeCCCceeeeccCCCeEEEEEeCCE--EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 759 IDSSRTLKDIYRSKGIKSMSVVQGK--IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 759 WDl~~~~~~l~~~~~V~sla~sdg~--llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
|++.........-..-.++.|++.. -+.|+......+||+.++...... -.++.. ..-....+.|+
T Consensus 1172 W~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty---------lt~~~~---~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY---------LTDTVT---SSYSNNLAHFS 1239 (1516)
T ss_pred hccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh---------cCcchh---hhhhccccccC
Confidence 9887422222222234566776332 344666678899999986542210 000000 11111334555
Q ss_pred cCCCeE----EEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 837 VEGSNI----KEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 837 ~dDgtI----~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
|.|.-| .+||.+....++.+...+..+ .=.|+|+|..++..+ .|||+++.+.+++..
T Consensus 1240 P~D~LIlndGvLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1240 PCDTLILNDGVLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred CCcceEeeCceeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 554332 589988777666665444322 236899999888765 589998877765554
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.73 E-value=0.0036 Score=66.14 Aligned_cols=220 Identities=9% Similarity=-0.037 Sum_probs=132.8
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE---E
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-----PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR---K 739 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp-----dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~---s 739 (929)
...|-+|+..+.....+... +.+.|.| ...+|+.||..|...+|...+.+........+...|. .
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34577888876542222222 3344544 4457999999999999999876644333333333332 1
Q ss_pred eccCCCEEEEEecCCeEEEEeCCCceeeec-cC--CCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccc
Q 002389 740 LDTYGKTIFASTQGHRMKVIDSSRTLKDIY-RS--KGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWR 814 (929)
Q Consensus 740 ~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~-~~--~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~ 814 (929)
.......+..++.|.++++.++........ +. -.+.+.+++ |++ .++.+....|..|.+........... . .
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~--~-a 200 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY--E-A 200 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE--e-c
Confidence 223344677888999999999874333222 22 236778887 777 55677777888888876443322100 0 0
Q ss_pred cCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCe-----EEEecCCCCCeEEEEEecCCC--EEEEEeCCCcEEE
Q 002389 815 LQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQ-----ISIAPEKGTTIQAMAVVEDFI--YLNYNSSASSLQI 886 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~-----i~~l~~h~~~V~slafSpdg~--~LaSgS~DG~I~I 886 (929)
.....-.+..++... .+++++ .||++.|||.+.... ..+...|.+.++.+.|++.|. .|.-.-.-+.+.+
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~--Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVF--QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred ccCCCceeeeeccCcceEEEEe--cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 011122233344333 334433 689999999875432 234456889999999998553 3444444678999
Q ss_pred EECCCCcEEEEEe
Q 002389 887 WLRGTQQKVGRIS 899 (929)
Q Consensus 887 Wdl~sg~~i~tl~ 899 (929)
-|++++.....+.
T Consensus 279 ~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 279 VDTRNYVNHQVIV 291 (344)
T ss_pred EEcccCceeeEEe
Confidence 9999987765544
No 307
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.04 Score=58.28 Aligned_cols=262 Identities=11% Similarity=0.084 Sum_probs=136.2
Q ss_pred CEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 651 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-SFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 651 ~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vt-slafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
.|-+-+.- +++++.|+..|.+++-+.++++. .+.+..- +.|. .....+++..++.|+.|++.+.-|..+..+...
T Consensus 54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred eeeeeeEEECCEEEEEEccCcEEEEEecchhh--eeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 34444433 77899999999999999999853 3444322 2222 233567899999999999999999988766544
Q ss_pred EEeccCCCe-EEeccCCCEEEEEecCCeEEEEeCC-Cceeeecc---CCCeE--------EEEE--eCCEEEEEECCCcE
Q 002389 729 EVIATKEPI-RKLDTYGKTIFASTQGHRMKVIDSS-RTLKDIYR---SKGIK--------SMSV--VQGKIYIGCMDSSI 793 (929)
Q Consensus 729 ~~~~h~~~V-~s~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~~---~~~V~--------sla~--sdg~llsgs~Dg~I 793 (929)
...+....+ ..+.+....++++...|.+.--..+ ....++.. .+++. ++.. -||.+.+-+..| -
T Consensus 131 skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG-~ 209 (354)
T KOG4649|consen 131 SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG-R 209 (354)
T ss_pred cccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC-c
Confidence 322221111 1456655566666666655544443 22222221 11111 1122 377766666666 4
Q ss_pred EEEEccCCccceecccccccccCCCCe-EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe-c-
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPI-NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV-E- 870 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I-~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS-p- 870 (929)
.+|...++...-..+. . ..|. ..+.+..++-+... -|.. .--+|..+.|...+.+.... ...+++ |
T Consensus 210 qvwr~~t~GpIf~~Pc----~--s~Ps~q~i~~~~~~Cf~~~-~p~~-ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~ 278 (354)
T KOG4649|consen 210 QVWRPATKGPIFMEPC----E--SRPSCQQISLENENCFCAP-LPIA-GHLLWATQSGTTLHVYLSPK---LRFDLHSPG 278 (354)
T ss_pred EEEeecCCCceecccc----c--CCCcceEEEEecCCeEEEe-cccc-ceEEEEecCCcEEEEEeCcc---cceeccCCC
Confidence 5676666443221110 0 1111 22222222222221 1222 23467666664333221110 012221 2
Q ss_pred --CCCEEEEEeCCCcEEEEECC---------CCcE--EEEEeCCCCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 871 --DFIYLNYNSSASSLQIWLRG---------TQQK--VGRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 --dg~~LaSgS~DG~I~IWdl~---------sg~~--i~tl~~h~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
..+++..++.||.+.|--.. .|+. +..++-.+.|.+ +-. +..|+.|+.|..|+-||.
T Consensus 279 ~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-~grl~igcRDdYv~cldl 350 (354)
T KOG4649|consen 279 ISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVII-DGRLLIGCRDDYVRCLDL 350 (354)
T ss_pred CcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEE-ccEEEEEEccCeEEEEec
Confidence 24567778889998887332 2222 222222222222 222 346888999999999985
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.68 E-value=0.067 Score=57.44 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=125.7
Q ss_pred EEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 002389 654 ALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF-EPGESLLSGSADKTIGVWQMVQRKLELIE 729 (929)
Q Consensus 654 sl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafs-pdg~~LaSgs~DgtIrIWDl~tg~~~~~~ 729 (929)
++.|. ++ ++++--..+.|..|+..++... ...+ .. ...+++. ++ ..++.+..++ +.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~---~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL---PG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEES---SS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec---CC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEe
Confidence 45676 34 5666667899999999987532 2222 22 6677777 56 4555555555 455699988765444
Q ss_pred Eec-cC-CCe--E--EeccCCCEEEEEecC--------CeEEEEeCCCceeeec-cCCCeEEEEEe-CCE-EE-EEECCC
Q 002389 730 VIA-TK-EPI--R--KLDTYGKTIFASTQG--------HRMKVIDSSRTLKDIY-RSKGIKSMSVV-QGK-IY-IGCMDS 791 (929)
Q Consensus 730 ~~~-h~-~~V--~--s~s~~g~~L~sgs~D--------g~V~IWDl~~~~~~l~-~~~~V~sla~s-dg~-ll-sgs~Dg 791 (929)
... .. ... . .+.++|+..++.... |.+..++..+...... .-...+.++|+ +++ ++ +-+..+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccc
Confidence 432 11 112 2 367888855555433 5577777774433333 24557789998 665 55 456678
Q ss_pred cEEEEEccCCcc-ceecccccccccCC--CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389 792 SIQELAVSNNVE-REIKAPFKSWRLQS--KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 792 ~I~iwDl~tg~~-~~i~~~~~~~~~~~--~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf 868 (929)
.|..+++..... ..... ....... .....+++..++...++.. ..+.|.++|.+ ++.+..+......+++++|
T Consensus 157 ~i~~~~~~~~~~~~~~~~--~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRR--VFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEE--EEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeee--eEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 899999864322 11100 0111122 2367788877765544433 57899999998 6666666555568999999
Q ss_pred e-cCCCEEEE
Q 002389 869 V-EDFIYLNY 877 (929)
Q Consensus 869 S-pdg~~LaS 877 (929)
. ++.+.|..
T Consensus 233 gg~~~~~L~v 242 (246)
T PF08450_consen 233 GGPDGKTLYV 242 (246)
T ss_dssp ESTTSSEEEE
T ss_pred ECCCCCEEEE
Confidence 5 66565543
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.033 Score=61.28 Aligned_cols=219 Identities=14% Similarity=0.161 Sum_probs=132.3
Q ss_pred EEEEEEcCCCC-EEEEEeCCCe-EEEEEccCCeEEEEEEeccCCCeE---EeccCCCEEEEEe-----cCCeEEEEeCCC
Q 002389 694 VTSFSLFEPGE-SLLSGSADKT-IGVWQMVQRKLELIEVIATKEPIR---KLDTYGKTIFAST-----QGHRMKVIDSSR 763 (929)
Q Consensus 694 Vtslafspdg~-~LaSgs~Dgt-IrIWDl~tg~~~~~~~~~h~~~V~---s~s~~g~~L~sgs-----~Dg~V~IWDl~~ 763 (929)
...++.+|+.. .++.+-.-|+ ..+||..+++.............+ .|+++|+++++.- ..|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888444 4677777665 668999998865433332222222 5899999999984 457999999984
Q ss_pred ceeeecc----CCCeEEEEEe-CC-EEEEE------------------ECCCcEEEEEccCCccceeccccccc--ccCC
Q 002389 764 TLKDIYR----SKGIKSMSVV-QG-KIYIG------------------CMDSSIQELAVSNNVEREIKAPFKSW--RLQS 817 (929)
Q Consensus 764 ~~~~l~~----~~~V~sla~s-dg-~llsg------------------s~Dg~I~iwDl~tg~~~~i~~~~~~~--~~~~ 817 (929)
....+.. .-....+.+. || .++++ ..+.++...|..+|+..... .+ ..|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~----~Lp~~~~~ 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV----ELPPDLHQ 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee----ecCccccc
Confidence 4333321 1122333343 66 33332 12556666777776643321 11 2356
Q ss_pred CCeEEEEEcCCceEEEEEecCC------CeEEEEECCCCCeEEEec-------CCCCCeEEEEEecCCCEEEEEe-CCCc
Q 002389 818 KPINSLVVYKDWLYSASSSVEG------SNIKEWRRHRKPQISIAP-------EKGTTIQAMAVVEDFIYLNYNS-SASS 883 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dD------gtI~IWDl~~~~~i~~l~-------~h~~~V~slafSpdg~~LaSgS-~DG~ 883 (929)
..|..++..+++....+....+ --+-+++.... ...+. .-.+.+-+|++++++.+++..| ..|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 6788888888887776655322 12333433322 22221 2346899999999999886665 6789
Q ss_pred EEEEECCCCcEEEEEeCCCCeEEEEEc-CCEEEEEEC
Q 002389 884 LQIWLRGTQQKVGRISAGSKITSLLTA-NDIVLCGTE 919 (929)
Q Consensus 884 I~IWdl~sg~~i~tl~~h~~Vtsvs~d-g~~LaSgs~ 919 (929)
+.+||..+++.+...... .+-.++.. +.+++|.+.
T Consensus 241 ~~~~d~~tg~~~~~~~l~-D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLP-DACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred EEEEECCCCCEeeccccC-ceeeeeecCCceEEeCCC
Confidence 999999999998776644 24455554 334544443
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0018 Score=77.26 Aligned_cols=137 Identities=14% Similarity=0.176 Sum_probs=96.7
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEEccC-CeEEEEEEec
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-----GESLLSGSADKTIGVWQMVQ-RKLELIEVIA 732 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd-----g~~LaSgs~DgtIrIWDl~t-g~~~~~~~~~ 732 (929)
+.+++|||.||+|.|-.+.+.+......+ ..++.+++++|+ .+.+++||.-| +.++.-.= |.........
T Consensus 83 Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred CceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 44999999999999999988764333333 578999999998 45699999888 66654221 2212223445
Q ss_pred cCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CC------CeEEEEEeCCEEEEEECCCcEEEEEccC
Q 002389 733 TKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SK------GIKSMSVVQGKIYIGCMDSSIQELAVSN 800 (929)
Q Consensus 733 h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~------~V~sla~sdg~llsgs~Dg~I~iwDl~t 800 (929)
..++|.++.+.|++++.++.+| |++||... .+..+.. .. .-..+.|.+...+.-|+..+|++..++.
T Consensus 159 ~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 159 GEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence 6789999999999999998777 89999872 1212221 11 2335667666666677888899998874
No 311
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.56 E-value=0.0061 Score=81.26 Aligned_cols=244 Identities=13% Similarity=0.064 Sum_probs=169.3
Q ss_pred CCCchhHHHHHHHHHhhhhhcccc-cccchhhhHHHHHHHHHhccCCCCceeccc-hHHHHHHHHHHHhcCcchhhhhhh
Q 002389 99 EKDAKSELLEIIEKAISSLFFSGD-LRKCNKDYVVEVTTLYKMLNSKTGVKYDML-QDVILEQLLTAISASKEETVIRAS 176 (929)
Q Consensus 99 ~~~~~~~~~~~l~~~i~~~~~s~~-l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~e~~~~s~~~~v~~~~ 176 (929)
+.|..++..++.+..|.+|..... .++.+ +++.++-.+- +.++.-+..+. .+.+|.-|+..|. |-+.++.+.+
T Consensus 4 ~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~-~Al~~Lr~La---k~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nA 78 (2102)
T PLN03200 4 EMDDPDGTLASVAQCIEQLRAKSSSPQEKE-LTTARLLELA---KTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNA 78 (2102)
T ss_pred cccCccchHHHHHHHHHHHHcccCCHHHHH-HHHHHHHHHH---hcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHH
Confidence 345566778888888888885532 34444 6666666654 43344344443 4777888888875 5678899999
Q ss_pred HHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcch-----hhHHHHHhcCCCc------hhhhhccchhHHHHHHhcc
Q 002389 177 VSILTTIILANESVIEDIKKKGLRLSDLATALKRNVP-----EAAILIYLIKPSP------TEIKTLELLPTLVEVICTS 245 (929)
Q Consensus 177 v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~-----~~~vl~~l~~~~~------~~~~~~~~~~~~~~~~~~~ 245 (929)
+++|..+-.. +..+..|.. .--+.++..+|++|=+ -|++|-+|..... .-..+..-+|.|+++++.+
T Consensus 79 aaaL~nLS~~-e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 79 AAVLGVLCKE-EDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHHHHHhcC-HHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 9998888665 556666664 6788999999999622 2346666654432 2234578899999999987
Q ss_pred ccccCcccccccCchhhHHHHHHHHHhccccccchhh-hhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcc
Q 002389 246 KLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMH-LAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQC 324 (929)
Q Consensus 246 ~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~c 324 (929)
+.. +. .-+..|+..|..|-... ++ ...++..|+++.|++.+..++.+.+..++.+|.+-+..++..
T Consensus 157 sk~-d~------~L~~~Av~AL~nLs~~~------en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 157 NKQ-DK------VVEGLLTGALRNLCGST------DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS 223 (2102)
T ss_pred chh-hH------HHHHHHHHHHHHHhcCc------cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH
Confidence 522 10 01233456676664422 23 334456789999999999999999999999887777666667
Q ss_pred hhHHHhhcCccchhhhhhcCC-chhHHHHHHHHHHHhcc
Q 002389 325 RKYLSEFTAVAPLACLLQSGE-KRAIMIALEFFHEILRI 362 (929)
Q Consensus 325 r~~ia~~~~~~~~~~l~~~~~-~~~~~~~~~~~~el~~l 362 (929)
|.-|.+.=-..+++++|.++. ...|..|+..|..|-.-
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC
Confidence 777777777999999998764 47789888888887764
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.56 E-value=0.028 Score=67.03 Aligned_cols=238 Identities=10% Similarity=0.095 Sum_probs=133.4
Q ss_pred EEeC-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCc-----EE-EEEEcCCCCEEEEEe---------CCCeEEEEE
Q 002389 656 IYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-----VT-SFSLFEPGESLLSGS---------ADKTIGVWQ 719 (929)
Q Consensus 656 ~fs~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~-----Vt-slafspdg~~LaSgs---------~DgtIrIWD 719 (929)
...+ +.++.++.||.|+-+|.++++. +..+...... +. +..+ .+..++.++ .+|.+...|
T Consensus 106 ~~~~~~~V~v~~~~g~v~AlD~~TG~~--~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD 181 (488)
T cd00216 106 AYWDPRKVFFGTFDGRLVALDAETGKQ--VWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYD 181 (488)
T ss_pred EEccCCeEEEecCCCeEEEEECCCCCE--eeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEE
Confidence 3445 8899999999999999999864 4444322110 11 1112 124454443 368899999
Q ss_pred ccCCeEEEEEEeccCC-------------------Ce---EEeccCCCEEEEEecCC------------------eEEEE
Q 002389 720 MVQRKLELIEVIATKE-------------------PI---RKLDTYGKTIFASTQGH------------------RMKVI 759 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~-------------------~V---~s~s~~g~~L~sgs~Dg------------------~V~IW 759 (929)
..+|+........... .+ ..+.+.+..++.++.++ .+.-+
T Consensus 182 ~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 182 VETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred CCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 9999876544332111 01 12333466788887665 67777
Q ss_pred eCCCceeeecc---CC------C-----eEEEEEeCC----EEEEEECCCcEEEEEccCCccceecccccccccCCCCeE
Q 002389 760 DSSRTLKDIYR---SK------G-----IKSMSVVQG----KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPIN 821 (929)
Q Consensus 760 Dl~~~~~~l~~---~~------~-----V~sla~sdg----~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~ 821 (929)
|...-...... .. . +..+.-.+| .+++++.+|.+..+|..+|+..-. .... ..
T Consensus 262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~--------~~~~-~~ 332 (488)
T cd00216 262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA--------RPEV-EQ 332 (488)
T ss_pred cCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE--------eEee-cc
Confidence 76622111111 11 0 111110123 267788999999999999874321 1100 01
Q ss_pred EEEEcCCceEEEEE---------------ecCCCeEEEEECCCCCeEEEecCCC--------CCeEEEEEecCCCEEEEE
Q 002389 822 SLVVYKDWLYSASS---------------SVEGSNIKEWRRHRKPQISIAPEKG--------TTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 822 sl~~~~d~i~~~s~---------------S~dDgtI~IWDl~~~~~i~~l~~h~--------~~V~slafSpdg~~LaSg 878 (929)
.+...++.++..+. ...+|.+.-.|..+++.+-...... .+...-...-.+..++.|
T Consensus 333 ~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g 412 (488)
T cd00216 333 PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG 412 (488)
T ss_pred ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE
Confidence 12222333333211 1234678888888887654443220 111110111256788888
Q ss_pred eCCCcEEEEECCCCcEEEEEeCCCCeEE
Q 002389 879 SSASSLQIWLRGTQQKVGRISAGSKITS 906 (929)
Q Consensus 879 S~DG~I~IWdl~sg~~i~tl~~h~~Vts 906 (929)
+.||.++.+|..+|+.+.+++..+.+.+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~~~~~a 440 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTPSGIQA 440 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECCCCceE
Confidence 8999999999999999999887666544
No 313
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.54 E-value=0.023 Score=64.88 Aligned_cols=223 Identities=9% Similarity=0.095 Sum_probs=137.8
Q ss_pred EEEEe--CCEEEEEECCCeEEEEECCCCCee--EEEEeccCCCcEEEEEEcCCCCE--EE-----EEeCCCeEEEEEccC
Q 002389 654 ALIYY--KGLLCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGES--LL-----SGSADKTIGVWQMVQ 722 (929)
Q Consensus 654 sl~fs--~~~LaSGs~DGtIrIWD~~~~~~~--~i~~l~gH~~~Vtslafspdg~~--La-----Sgs~DgtIrIWDl~t 722 (929)
-+.|+ |.+.|-- ....++|+++ ++... +...++ ...|+...|+|.|+. |+ .++.++++++|.+..
T Consensus 136 ~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 136 VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred eeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 45565 4443322 3346899997 33321 222222 356888899997553 44 356789999999987
Q ss_pred CeEEEEEEeccCCCe-EEeccCCCEEEEEe-----------cCCeEEEEeCCCcee-ee-ccCCCeEEEEEe---CCE-E
Q 002389 723 RKLELIEVIATKEPI-RKLDTYGKTIFAST-----------QGHRMKVIDSSRTLK-DI-YRSKGIKSMSVV---QGK-I 784 (929)
Q Consensus 723 g~~~~~~~~~h~~~V-~s~s~~g~~L~sgs-----------~Dg~V~IWDl~~~~~-~l-~~~~~V~sla~s---dg~-l 784 (929)
++.+.....-.-+.+ ..+.+.|+++++-. ...+++++++.+... .. ...+.|...+|. ++. +
T Consensus 212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeE
Confidence 665443333222222 24667777665541 234678888873322 22 225679999994 333 5
Q ss_pred EEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEE--EecCCCeEEEEECCCCCeEE-EecCCCC
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS--SSVEGSNIKEWRRHRKPQIS-IAPEKGT 861 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s--~S~dDgtI~IWDl~~~~~i~-~l~~h~~ 861 (929)
++|-.+..+.++|+.++-.. ......-+++.++|...+++. +..-.|.|-+||..+...+. .+.+.
T Consensus 292 i~g~~pa~~s~~~lr~Nl~~---------~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-- 360 (561)
T COG5354 292 ISGYMPASVSVFDLRGNLRF---------YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-- 360 (561)
T ss_pred EecccccceeecccccceEE---------ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--
Confidence 56778899999999875211 222445556677777666554 54445789999987765443 55433
Q ss_pred CeEEEEEecCCCEEEEEe------CCCcEEEEECCC
Q 002389 862 TIQAMAVVEDFIYLNYNS------SASSLQIWLRGT 891 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS------~DG~I~IWdl~s 891 (929)
..+.+.|+|||.++.+.. .|+.|.|||+..
T Consensus 361 n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 361 NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 345678999999987653 478899999754
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.53 E-value=0.0018 Score=77.81 Aligned_cols=190 Identities=13% Similarity=0.137 Sum_probs=124.9
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR 738 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~ 738 (929)
+..++-|+-...+..+|+.+.+......+ ..+.|+-+. .+++++.+|...|+|.+-|..+-+. ......|.+.+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSIS 221 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec--cCCceEEEE--ecCcEEEeecccceEEeecCCcCce-eeeeecccccee
Confidence 34667777777778889888754222222 233455554 4778899999999999999987764 344557899999
Q ss_pred EeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCC
Q 002389 739 KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK 818 (929)
Q Consensus 739 s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~ 818 (929)
.|+..|+.+++++..+...-+ ..|..|++||++.-+.. .|... +..
T Consensus 222 DfDv~GNlLitCG~S~R~~~l----------------------------~~D~FvkVYDLRmmral---~PI~~---~~~ 267 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNL----------------------------AMDPFVKVYDLRMMRAL---SPIQF---PYG 267 (1118)
T ss_pred eeeccCCeEEEeecccccccc----------------------------cccchhhhhhhhhhhcc---CCccc---ccC
Confidence 999999999999865422111 23778899999863321 12111 111
Q ss_pred CeEEEEEcCCceEEEEEecCCCeEEEEEC---CCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 819 PINSLVVYKDWLYSASSSVEGSNIKEWRR---HRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 819 ~I~sl~~~~d~i~~~s~S~dDgtI~IWDl---~~~~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
..-+.+||.....++..+..|...+-|. .+.. -+......+..+.++.+|++|..++.|..+|.|.+|.
T Consensus 268 -P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 268 -PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1345667764433322224567778773 2221 1233333445699999999999999999999999997
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.01 Score=70.07 Aligned_cols=267 Identities=9% Similarity=0.048 Sum_probs=148.8
Q ss_pred CEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE-
Q 002389 651 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE- 729 (929)
Q Consensus 651 ~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~- 729 (929)
..+|++-++.+++.|++-|.+++|+-.++... .....+-.+.+.....+++..++|.|+..|.|.++.+..+......
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 34566666889999999999999999887642 3334445556667788888888999999999999988663321111
Q ss_pred ----EeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-------eeeeccCCCeEEEEEeCCEEEEEECCCcEEEE
Q 002389 730 ----VIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-------LKDIYRSKGIKSMSVVQGKIYIGCMDSSIQEL 796 (929)
Q Consensus 730 ----~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-------~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iw 796 (929)
...|+..|++ |+.++..+++|...|+|..-.++.. ...+.....|..+.+.++.+++.+--.. .++
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~-~Lc 194 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC-ILC 194 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh-hee
Confidence 1134667775 6788899999999999988877641 1112224456666666777444332222 233
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcC----CceEEEEEecCCCeEEEEECCC-CCeEEEec--------------
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYK----DWLYSASSSVEGSNIKEWRRHR-KPQISIAP-------------- 857 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~----d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~-------------- 857 (929)
+...++...+- .+.-++. ...-..-++. ....+.+.-|. .++|..+- |.++++..
T Consensus 195 ~tE~eti~QIG--~k~R~~~-~~~GACF~~g~~~~q~~~IycaRPG---~RlWead~~G~V~~Thqfk~ala~~p~p~i~ 268 (726)
T KOG3621|consen 195 QTEAETITQIG--KKPRKSL-IDFGACFFPGQCKAQKPQIYCARPG---LRLWEADFAGEVIKTHQFKDALARPPAPEIP 268 (726)
T ss_pred ecchhHHHHhc--CCCcCCc-cccceEEeeccccCCCceEEEecCC---CceEEeecceeEEEeeehhhhhccCCCCccc
Confidence 33332211110 0000000 0000111110 11122222211 34554321 22111110
Q ss_pred --C-------C----CC--CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCc
Q 002389 858 --E-------K----GT--TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGL 922 (929)
Q Consensus 858 --~-------h----~~--~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~~LaSgs~DG~ 922 (929)
. | .. ....+.+-.+ ..+.+-++-| |+|+|.++.+.+.-..+.+.|..++.+|+-|++-..||.
T Consensus 269 ~~s~esp~~~~~~~~~q~ls~~k~~~l~~-~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~ 346 (726)
T KOG3621|consen 269 IRSLESPNQRSLPSGTQHLSLSKSSTLHS-DRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRG 346 (726)
T ss_pred CCCcCCccccCCCCCccccccceeEEeec-ceEEEeecce-EEEEEeccceEEEeecCCCceeEEeecCceEEEEecCCc
Confidence 0 0 00 1111111122 2444444444 999999887777666667789999999988888888887
Q ss_pred EEEee
Q 002389 923 IKGWI 927 (929)
Q Consensus 923 I~IWd 927 (929)
+++..
T Consensus 347 l~~~s 351 (726)
T KOG3621|consen 347 LKVES 351 (726)
T ss_pred eeEEE
Confidence 76654
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.50 E-value=0.026 Score=62.05 Aligned_cols=206 Identities=15% Similarity=0.125 Sum_probs=116.4
Q ss_pred EEEECCCCCeeEEEEeccCCCcEE--EEEEcCCCCEEEEEe-----CCCeEEEEEccCCeEEEEEEeccCCCe--EEecc
Q 002389 672 KMWDIKKQSAMLVWDVKEHRKAVT--SFSLFEPGESLLSGS-----ADKTIGVWQMVQRKLELIEVIATKEPI--RKLDT 742 (929)
Q Consensus 672 rIWD~~~~~~~~i~~l~gH~~~Vt--slafspdg~~LaSgs-----~DgtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~ 742 (929)
.+||..+++. ...+....+.-. .-.|++||++|++.- ..|.|-|||...+-........+.-.- ..+.+
T Consensus 31 ~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 31 LVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 4667766643 223322111111 247999999998864 358899999984322222222222111 23577
Q ss_pred CCCEEEEEe------------------cCCeEEEEeCC-Ccee-e--ec---cCCCeEEEEEe-CCEEEEEECC------
Q 002389 743 YGKTIFAST------------------QGHRMKVIDSS-RTLK-D--IY---RSKGIKSMSVV-QGKIYIGCMD------ 790 (929)
Q Consensus 743 ~g~~L~sgs------------------~Dg~V~IWDl~-~~~~-~--l~---~~~~V~sla~s-dg~llsgs~D------ 790 (929)
+++.++++- -+..+...|.. +.+. . +. +...+..+++. +|.++.|...
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 887776662 11122223222 1111 1 11 12347788887 7777766531
Q ss_pred CcEEEEEccCCc-cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 002389 791 SSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 791 g~I~iwDl~tg~-~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS 869 (929)
..--+.-...++ ...+..+...|..-...+-++++++++...+..+|.++.+.+||..++..+... .-..+..++..
T Consensus 189 ~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~ 266 (305)
T PF07433_consen 189 APPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPT 266 (305)
T ss_pred cCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeec
Confidence 111122222222 222333333445557789999999999888889999999999999999977655 33456777777
Q ss_pred cCCCEEEEEeCCCc
Q 002389 870 EDFIYLNYNSSASS 883 (929)
Q Consensus 870 pdg~~LaSgS~DG~ 883 (929)
+++ +++|.+ .|.
T Consensus 267 ~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 267 DDG-FLVSSG-QGQ 278 (305)
T ss_pred CCc-eEEeCC-Ccc
Confidence 777 666654 344
No 317
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.0061 Score=72.29 Aligned_cols=251 Identities=12% Similarity=0.090 Sum_probs=151.1
Q ss_pred CCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCC------------CEEEEEeCCCeEE
Q 002389 650 GAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG------------ESLLSGSADKTIG 716 (929)
Q Consensus 650 ~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg------------~~LaSgs~DgtIr 716 (929)
..-.++.|+ +|+||-|+. ..|.+-|..+.+ .++.+.-|+..|+.+.|.|-. -.|+++...|.|.
T Consensus 16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q--~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQ--LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCccceEEEecC-ceEEEEehhhhh--hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 336678898 557776664 567788887764 478888999999999998631 1478888899999
Q ss_pred EEEccCCeEEEEEEeccCCCeEE--ec---cCC-CEEEEEecCCeEEEEeCCCceeeecc---CCCeEEEEEe--CCE-E
Q 002389 717 VWQMVQRKLELIEVIATKEPIRK--LD---TYG-KTIFASTQGHRMKVIDSSRTLKDIYR---SKGIKSMSVV--QGK-I 784 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~s--~s---~~g-~~L~sgs~Dg~V~IWDl~~~~~~l~~---~~~V~sla~s--dg~-l 784 (929)
+||...+...+ ....+..++.. |- .+. +.+++.....++.+|+.....+.... +....|+.+. |.+ +
T Consensus 93 l~d~~~~s~~~-~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVIN-WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhh-hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 99998876433 23345556653 32 333 46777788889999987743333322 3345566664 433 5
Q ss_pred EEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceE-----EEEEecCCCeEEEEECCCCCeE-EEecC
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY-----SASSSVEGSNIKEWRRHRKPQI-SIAPE 858 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~-----~~s~S~dDgtI~IWDl~~~~~i-~~l~~ 858 (929)
..-+..|.+-+-+.-.... ...+...+++..+..- ..+.+ + +..+.... ..+
T Consensus 172 ~~l~s~g~vl~~~~l~~se------------p~~pgk~~qI~sd~Sdl~~lere~at--~------ns~ts~~~sa~f-- 229 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSE------------PDVPGKEFQITSDHSDLAHLERETAT--G------NSTTSTPASAYF-- 229 (1062)
T ss_pred EEEccCceEEEEeccCCCC------------CCCCceeEEEecCccchhhhhhhhhc--c------ccccCCCcchhH--
Confidence 5556666665555433111 1222222332222100 00000 0 00000000 000
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---CCeEEEEEcC--CEEEEEECCCcEEEee
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---SKITSLLTAN--DIVLCGTETGLIKGWI 927 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h---~~Vtsvs~dg--~~LaSgs~DG~I~IWd 927 (929)
-...-.++|+|.-+-++-......+.|+|++-..++....-. .++..+-|++ +.|+++..||.+.+|.
T Consensus 230 -ity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 230 -ITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred -HHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 001224677886665555556788999999888887776643 3477777774 4999999999999994
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0019 Score=72.33 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=129.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC--CeEEEEEEeccCCCeEE--eccCCCEEEEEec-CCeEEEEeCCC
Q 002389 689 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ--RKLELIEVIATKEPIRK--LDTYGKTIFASTQ-GHRMKVIDSSR 763 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t--g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~-Dg~V~IWDl~~ 763 (929)
-|.+.|+.+.- .-.+++.+++.||.++.|.-.. |.........|-..+.+ .+.++..+.+++. |..++++|+..
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 37777776643 3456899999999999997543 22122222244444443 4567888888777 99999999863
Q ss_pred c-----eeeeccCCCeEEEEEeCC----EEEE-EECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEE
Q 002389 764 T-----LKDIYRSKGIKSMSVVQG----KIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA 833 (929)
Q Consensus 764 ~-----~~~l~~~~~V~sla~sdg----~lls-gs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~ 833 (929)
- .+...-.+.+. +..+.| .+++ .-.++.+.++|-..+..... ..-..|..+|..+...+.+-..+
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~----~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG----YFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccc----eecccccCceEEEEeecccccee
Confidence 1 11111122222 222333 2333 33578899998766432111 11245788999999888776666
Q ss_pred EEecCCCeEEEEECCC------CCeEE---------EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 002389 834 SSSVEGSNIKEWRRHR------KPQIS---------IAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 834 s~S~dDgtI~IWDl~~------~~~i~---------~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl 898 (929)
+.. .+|-|.-|.... ..+.. .+........++.|+|+|..+.+-+.|..|++++.++|+.++.+
T Consensus 161 SiD-~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 161 SID-ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ecc-ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 543 568899998763 11111 11223346789999999999999999999999999998776544
Q ss_pred e
Q 002389 899 S 899 (929)
Q Consensus 899 ~ 899 (929)
.
T Consensus 240 D 240 (558)
T KOG0882|consen 240 D 240 (558)
T ss_pred h
Confidence 3
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.047 Score=63.78 Aligned_cols=150 Identities=9% Similarity=0.038 Sum_probs=88.9
Q ss_pred CEEEEEEe-CC-E-EEEEEC---CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCC--CeEEEEEcc
Q 002389 651 AVTALIYY-KG-L-LCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSAD--KTIGVWQMV 721 (929)
Q Consensus 651 ~Vtsl~fs-~~-~-LaSGs~---DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~D--gtIrIWDl~ 721 (929)
.+..-.|+ ++ . ++..+. +..|.++|+.+++.+.+.. ..+......|+|||+.++ +.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 67788898 33 3 554443 3568999998887544433 445566778999999865 44333 467777887
Q ss_pred CCeEEEEEEeccCCCeEEeccCCCEEEEEecC-C--eEEEEeCCC-ceeeeccCCCeEEEEEe-CCE-EEEEECC-----
Q 002389 722 QRKLELIEVIATKEPIRKLDTYGKTIFASTQG-H--RMKVIDSSR-TLKDIYRSKGIKSMSVV-QGK-IYIGCMD----- 790 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~D-g--~V~IWDl~~-~~~~l~~~~~V~sla~s-dg~-llsgs~D----- 790 (929)
++.............-..|+|+|+.++..+.. + .|+++|+.+ ....+..... ....|+ +|+ ++..+..
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCccc
Confidence 77643322211111223699999988887643 3 677777763 3323322211 123666 666 4433322
Q ss_pred ----CcEEEEEccCCccc
Q 002389 791 ----SSIQELAVSNNVER 804 (929)
Q Consensus 791 ----g~I~iwDl~tg~~~ 804 (929)
..|.+.|+.++...
T Consensus 345 ~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCCCcEEEEEECCCCCeE
Confidence 36788888776543
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.32 E-value=0.0027 Score=68.01 Aligned_cols=232 Identities=16% Similarity=0.126 Sum_probs=128.6
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-EEEEE---EeccCC------------CeEE---eccCC-CEEEEE
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LELIE---VIATKE------------PIRK---LDTYG-KTIFAS 750 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~-~~~~~---~~~h~~------------~V~s---~s~~g-~~L~sg 750 (929)
.+.|+++.|...|.||++|...|.|.++.-.... ++... ..+|.. .|.. +.+.+ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999765432 11111 222322 1222 23333 367788
Q ss_pred ecCCeEEEEeCCC-ceeeeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceeccccccc-ccCCCCeEEEEEcC
Q 002389 751 TQGHRMKVIDSSR-TLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSW-RLQSKPINSLVVYK 827 (929)
Q Consensus 751 s~Dg~V~IWDl~~-~~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~-~~~~~~I~sl~~~~ 827 (929)
+.|.+|++|.+.. .++....+.-..++.++ .|.+.+.. .+.+=.+..........|-+++ ..|...+.++.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~---~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK---ELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHH---HhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 8999999999863 22222221111122222 11111100 0000000000000001111223 45677788999998
Q ss_pred CceEEEEEecCCCeEEEEECCCC---CeEEEecCCC-----CCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcE----
Q 002389 828 DWLYSASSSVEGSNIKEWRRHRK---PQISIAPEKG-----TTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQK---- 894 (929)
Q Consensus 828 d~i~~~s~S~dDgtI~IWDl~~~---~~i~~l~~h~-----~~V~slafSpdg-~~LaSgS~DG~I~IWdl~sg~~---- 894 (929)
+..+.++. +|=.|.+|++.-. --+...+.|. .-|++..|+|.. ..+.-.++.|.|++-|++....
T Consensus 183 D~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred chheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 88777754 6789999997532 2233344453 368888999853 4455566789999999763211
Q ss_pred --EEEEe--C--C-------CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 895 --VGRIS--A--G-------SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 895 --i~tl~--~--h-------~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+.... + + +.|..+.|+ |++|++-+. -+|+|||.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 11111 1 1 124445554 778887765 47999984
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.31 E-value=0.083 Score=62.99 Aligned_cols=265 Identities=15% Similarity=0.114 Sum_probs=144.2
Q ss_pred EeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC------cEE--EEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 657 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK------AVT--SFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 657 fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~------~Vt--slafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
+.++.++.++.|+.+.-.|..+++. +..+..... .+. .+... ++..++.++.|+.|.-+|.++|+....
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 4478888899999999999998864 344322211 110 11111 226788888999999999999987654
Q ss_pred EEeccCC----CeE-EeccCCCEEEEEe---------cCCeEEEEeCCC-ce-eeecc--C-------------------
Q 002389 729 EVIATKE----PIR-KLDTYGKTIFAST---------QGHRMKVIDSSR-TL-KDIYR--S------------------- 771 (929)
Q Consensus 729 ~~~~h~~----~V~-s~s~~g~~L~sgs---------~Dg~V~IWDl~~-~~-~~l~~--~------------------- 771 (929)
....... .+. +....+..++.++ .++.+..+|... .. -.... .
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 4332210 011 1112235555554 256777777652 11 11100 0
Q ss_pred CCeE-EEEEe--CCEEEEEECCC------------------cEEEEEccCCccceecc--cccccc--cCCCCeE-EEE-
Q 002389 772 KGIK-SMSVV--QGKIYIGCMDS------------------SIQELAVSNNVEREIKA--PFKSWR--LQSKPIN-SLV- 824 (929)
Q Consensus 772 ~~V~-sla~s--dg~llsgs~Dg------------------~I~iwDl~tg~~~~i~~--~~~~~~--~~~~~I~-sl~- 824 (929)
..+. +.++. .+.++.++.++ .+.-+|..+|+..=... +...|. ....++. .+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0111 22332 56788887665 68888998887532211 001111 1111111 111
Q ss_pred EcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE-----------------EeCCCcEEEE
Q 002389 825 VYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY-----------------NSSASSLQIW 887 (929)
Q Consensus 825 ~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS-----------------gS~DG~I~IW 887 (929)
........+.....+|.+...|..+++.+-..... ...++.+| +...+. ...+|.+.-.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 11111122222335788999999999876543211 11223334 222221 1236788888
Q ss_pred ECCCCcEEEEEeCC---------CCe--EEEEEcCCEEEEEECCCcEEEeec
Q 002389 888 LRGTQQKVGRISAG---------SKI--TSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 888 dl~sg~~i~tl~~h---------~~V--tsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
|..+|+.+-+.... .+. ..+...+..++.|+.||.|+.+|.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 99999987776644 122 234566889999999999988774
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.25 E-value=0.021 Score=71.14 Aligned_cols=233 Identities=13% Similarity=0.054 Sum_probs=134.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeecc
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR 770 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~ 770 (929)
.+.|.++.|..++..++.+..+|.|.+-|..+...+........-...+|++++..++..+.++++.+-+..=....
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~--- 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA--- 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh---
Confidence 46899999999999999999999999999888766555444444444568999999999999888887654300000
Q ss_pred CCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccc--cccc--cCCCCeEEEEEcCCceEEEEEe---cCC-CeE
Q 002389 771 SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPF--KSWR--LQSKPINSLVVYKDWLYSASSS---VEG-SNI 842 (929)
Q Consensus 771 ~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~--~~~~--~~~~~I~sl~~~~d~i~~~s~S---~dD-gtI 842 (929)
..+...=....++.+.++....=..+.-..|+.....+.. +... .....-.++.+-.|+.+.+... ..| +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0000000001233444554443333333333221111000 0000 0112223566777775543321 134 799
Q ss_pred EEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCC---CcEEEEEeCCC-CeEEEEEc--CCE
Q 002389 843 KEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSLQIWLRGT---QQKVGRISAGS-KITSLLTA--NDI 913 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS---~DG~I~IWdl~s---g~~i~tl~~h~-~Vtsvs~d--g~~ 913 (929)
++||.+ |.+-..-....+-=.+++|-|.|..+++-. +|+.|.+|..+. |+..-.+.... +|..++|+ ++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 999988 443333323333445799999999998754 567899998643 22222222222 38889998 667
Q ss_pred EEE---EECCCcEEEee
Q 002389 914 VLC---GTETGLIKGWI 927 (929)
Q Consensus 914 LaS---gs~DG~I~IWd 927 (929)
|++ ......|++|-
T Consensus 304 LAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWT 320 (1265)
T ss_pred eeeeecccccceEEEEE
Confidence 776 44445599995
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.00062 Score=73.90 Aligned_cols=136 Identities=4% Similarity=0.009 Sum_probs=97.4
Q ss_pred EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----eEEEecCC
Q 002389 784 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----QISIAPEK 859 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~----~i~~l~~h 859 (929)
-++.+.+..+-+.|+.+|-...+. ....|.+++++........+. ..|.|..+|++.+. -....--|
T Consensus 227 hfs~G~sqqv~L~nvetg~~qsf~--------sksDVfAlQf~~s~nLv~~Gc-RngeI~~iDLR~rnqG~~~~a~rlyh 297 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQSFQ--------SKSDVFALQFAGSDNLVFNGC-RNGEIFVIDLRCRNQGNGWCAQRLYH 297 (425)
T ss_pred eecccccceeEEEEeecccccccc--------cchhHHHHHhcccCCeeEecc-cCCcEEEEEeeecccCCCcceEEEEc
Confidence 355666777888898887554432 245667777777555555444 67899999987541 11222248
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcE---EEEEeCCCC-----eEEEEEcCCEEEEEECCCcEEEeec
Q 002389 860 GTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQK---VGRISAGSK-----ITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 860 ~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg~~---i~tl~~h~~-----Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
...|+++..-. ++++|.+.+.+|+|++||.+--++ +.++.+|.. -..+......++++|+|-..+||.+
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 88899887766 788999999999999999776666 999999922 1224444668899999999999974
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.012 Score=70.30 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=58.6
Q ss_pred CEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 651 AVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 651 ~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
.+++++|++. .|+.|-.-|.+.+|...+.+. -.....|+.+|..+.|||+|..++|+..-|.+.+|..+
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~--htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET--HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCcee--eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3567999965 688999999999999987653 22335799999999999999999999999999999875
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.21 E-value=0.0021 Score=77.28 Aligned_cols=144 Identities=15% Similarity=0.250 Sum_probs=103.7
Q ss_pred CCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEEc
Q 002389 650 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---------DKTIGVWQM 720 (929)
Q Consensus 650 ~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~---------DgtIrIWDl 720 (929)
+.|+-++.++..+++|...|+|.+-|.++.+ .++++..|++.|.++. -.|+.|+|||. |..|+|||+
T Consensus 178 ~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 178 SGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred CceEEEEecCcEEEeecccceEEeecCCcCc--eeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhh
Confidence 3488888888899999999999999999875 4899999999998655 47889999986 567899999
Q ss_pred cCCeEEEEEEeccCCCeEEeccC-CCEEEEEecCCeEEEEe---CCCc---eeeecc-CCCeEEEEEe-CCE-EEEEECC
Q 002389 721 VQRKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVID---SSRT---LKDIYR-SKGIKSMSVV-QGK-IYIGCMD 790 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s~s~~-g~~L~sgs~Dg~V~IWD---l~~~---~~~l~~-~~~V~sla~s-dg~-llsgs~D 790 (929)
+.-+............+..|.|. ...+++++..|...+-| +.+. ...+.. ...+..+.++ +|. ++.|..+
T Consensus 254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 87543221111111122233332 45788899999999998 3332 122222 3448888887 555 7789999
Q ss_pred CcEEEEE
Q 002389 791 SSIQELA 797 (929)
Q Consensus 791 g~I~iwD 797 (929)
|.|.+|-
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999997
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.21 E-value=0.21 Score=55.87 Aligned_cols=249 Identities=13% Similarity=0.114 Sum_probs=134.7
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEeccC--C-
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIATK--E- 735 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs----------~DgtIrIWDl~tg~~~~~~~~~h~--~- 735 (929)
+.+.|+|.++++. +..+.. +-.-.+..+|+|+.+++++ ..-.|.+||..+-.......+..+ .
T Consensus 17 ~rv~viD~d~~k~--lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcE--EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 4788999988753 444432 2223356789999987643 344699999998766554444332 1
Q ss_pred -----CeEEeccCCCEEEEE--ecCCeEEEEeCCCc--eeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccC-Ccc
Q 002389 736 -----PIRKLDTYGKTIFAS--TQGHRMKVIDSSRT--LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSN-NVE 803 (929)
Q Consensus 736 -----~V~s~s~~g~~L~sg--s~Dg~V~IWDl~~~--~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~t-g~~ 803 (929)
....++.+++++++. +-...|.+-|+... ...+.... ....++ +..+.+-|.||++.-+.+.. |+.
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 122466677766554 33446667776522 11111111 122233 56688999999999998874 433
Q ss_pred ceecccccccccCCCCeEEE-EEc-CCc-eEEEEEecCCCeEEEEECCCCCeEE--EecC------CC----CCeEEEEE
Q 002389 804 REIKAPFKSWRLQSKPINSL-VVY-KDW-LYSASSSVEGSNIKEWRRHRKPQIS--IAPE------KG----TTIQAMAV 868 (929)
Q Consensus 804 ~~i~~~~~~~~~~~~~I~sl-~~~-~d~-i~~~s~S~dDgtI~IWDl~~~~~i~--~l~~------h~----~~V~slaf 868 (929)
. . .....+.....++..- ... .++ .+..+ -.|.|+--|+....... ...- .. +.-.-+++
T Consensus 171 ~-~-~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 171 A-Q-KSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp E-E-EEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred e-E-eeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 3 2 1223444334433321 111 222 22233 24566666655443211 1100 00 12233667
Q ss_pred ecCCCEEEEE---e-----CCC--cEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEE-ECCCcEEEeec
Q 002389 869 VEDFIYLNYN---S-----SAS--SLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCG-TETGLIKGWIP 928 (929)
Q Consensus 869 Spdg~~LaSg---S-----~DG--~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~-~LaSg-s~DG~I~IWdi 928 (929)
++....|..- + .|+ .|-+||+.+++.+.++....++.+++.+ .+ .|++. ..+|.+.+||.
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 7644443331 1 122 3677799999999999987778887765 22 55544 56899999986
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.20 E-value=0.19 Score=58.10 Aligned_cols=249 Identities=12% Similarity=0.081 Sum_probs=118.4
Q ss_pred CEEEEEEe--CCEEEEEECCCeEEEEECCCCCe-----------------------------------------eEEEEe
Q 002389 651 AVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-----------------------------------------MLVWDV 687 (929)
Q Consensus 651 ~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~-----------------------------------------~~i~~l 687 (929)
.|+.+.|. ..-|+.|...|.|.||.....+. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888888 34799999999999987643211 122223
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc-------CCCeEEe-------ccCC---CEEEEE
Q 002389 688 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT-------KEPIRKL-------DTYG---KTIFAS 750 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h-------~~~V~s~-------s~~g---~~L~sg 750 (929)
+...++|++++.| |=.+++.|..+|.+.|.|++....+....... ...++++ ..++ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3446788888886 44478888888999999988777655433322 1123332 1222 256777
Q ss_pred ecCCeEEEEeCCCceeeeccCCCeEEEEEe---CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC
Q 002389 751 TQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK 827 (929)
Q Consensus 751 s~Dg~V~IWDl~~~~~~l~~~~~V~sla~s---dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~ 827 (929)
+..|.+.+|.+-.. -.+.-.+..+... ++.++ .|..+|..+|...........-...+..+
T Consensus 162 Tn~G~v~~fkIlp~---~~g~f~v~~~~~~~~~~~~i~------~I~~i~~~~G~~a~At~~~~~~l~~g~~i------- 225 (395)
T PF08596_consen 162 TNSGNVLTFKILPS---SNGRFSVQFAGATTNHDSPIL------SIIPINADTGESALATISAMQGLSKGISI------- 225 (395)
T ss_dssp ETTSEEEEEEEEE----GGG-EEEEEEEEE--SS----------EEEEEETTT--B-B-BHHHHHGGGGT----------
T ss_pred eCCCCEEEEEEecC---CCCceEEEEeeccccCCCceE------EEEEEECCCCCcccCchhHhhccccCCCc-------
Confidence 77777777765210 0000001111111 12211 23333444433211100000000001111
Q ss_pred CceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE-----ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Q 002389 828 DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV-----VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS 902 (929)
Q Consensus 828 d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf-----Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~ 902 (929)
.+ +.+..+ ...++++...+.+..+......-....+.+ ...+..|++-..+|.|++|.+...+.+..+....
T Consensus 226 ~g-~vVvvS--e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~ 302 (395)
T PF08596_consen 226 PG-YVVVVS--ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP 302 (395)
T ss_dssp -E-EEEEE---SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS
T ss_pred Cc-EEEEEc--ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC
Confidence 12 333343 467999998777655544433223334455 2367788888899999999999999998888652
Q ss_pred C-------eEEEEEcCCEEEEEEC
Q 002389 903 K-------ITSLLTANDIVLCGTE 919 (929)
Q Consensus 903 ~-------Vtsvs~dg~~LaSgs~ 919 (929)
. =.++..+|+.++-.|.
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-SS
T ss_pred ccccccccccEECCCCCEEEEeCc
Confidence 2 1234556775554433
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.044 Score=67.67 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=97.8
Q ss_pred CCEEE-EEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccC-------CCEEEEEecCCeEEEEeCCCc---e-----e
Q 002389 703 GESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-------GKTIFASTQGHRMKVIDSSRT---L-----K 766 (929)
Q Consensus 703 g~~La-Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~-------g~~L~sgs~Dg~V~IWDl~~~---~-----~ 766 (929)
.++|+ .....+.++-.|+..|+.+.........+|..+.++ +...+.|-.++.+..||.+-. + +
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 33433 334567888999999997766666555668887664 346778888899999998721 1 1
Q ss_pred eeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEE
Q 002389 767 DIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEW 845 (929)
Q Consensus 767 ~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IW 845 (929)
.+.......|++.+ +|.+++|+.+|.|++||-.....++ .+.+-+.||..+..+.++.++++.+ +..+-++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT------~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi 644 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKT------ALPGLGDPIIGIDVTADGKWILATC--KTYLLLI 644 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhh------cCCCCCCCeeEEEecCCCcEEEEee--cceEEEE
Confidence 22234457788887 9999999999999999954322222 2334589999999999999998876 4567777
Q ss_pred EC
Q 002389 846 RR 847 (929)
Q Consensus 846 Dl 847 (929)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 63
No 329
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.2 Score=58.41 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=41.6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEcCC
Q 002389 860 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTAND 912 (929)
Q Consensus 860 ~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~dg~ 912 (929)
.+++..|++||+|+++|.-..+|.+.|.+..-.+.+..+... .....+.|.|+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 357999999999999999999999999987766777777655 34555666543
No 330
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.14 E-value=0.071 Score=57.38 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=109.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCe--EEEEEEeccCC-----CeEEeccCCCEEEEEecCCeEEEEeCCCc-eeee
Q 002389 697 FSLFEPGESLLSGSADKTIGVWQMVQRK--LELIEVIATKE-----PIRKLDTYGKTIFASTQGHRMKVIDSSRT-LKDI 768 (929)
Q Consensus 697 lafspdg~~LaSgs~DgtIrIWDl~tg~--~~~~~~~~h~~-----~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~l 768 (929)
++.+++|+.||.- .|..|.|-..++.- ...... -.++ .-.+|++++..++.+...|+|++||+-+. +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcq-VpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQ-VPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEe-cCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 4566788776654 47777776654421 111111 1122 12368999999999999999999998742 2222
Q ss_pred cc--------CCCeEEEEEe--------CCEEEEEECCCcEEEEEccCCccceecccc--cccccCCCCeEEEEEcCCce
Q 002389 769 YR--------SKGIKSMSVV--------QGKIYIGCMDSSIQELAVSNNVEREIKAPF--KSWRLQSKPINSLVVYKDWL 830 (929)
Q Consensus 769 ~~--------~~~V~sla~s--------dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~--~~~~~~~~~I~sl~~~~d~i 830 (929)
.. ...|..+.|. .-.+++...+|.++-|-+..++....+... ..-......|.++.+||...
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 2346666663 124778888888888887554332221100 00011244666777776644
Q ss_pred EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe---cCCCEEEEEeCCCc------EEEEECCCCcEEEEEeCC
Q 002389 831 YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV---EDFIYLNYNSSASS------LQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 831 ~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS---pdg~~LaSgS~DG~------I~IWdl~sg~~i~tl~~h 901 (929)
.++.++..... .+. ..+....+++-..- |..+. ++...|+. -.+|.+-+..... ..+.
T Consensus 161 LLlVgG~~~~~-------~~~----s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~ 227 (282)
T PF15492_consen 161 LLLVGGCEQNQ-------DGM----SKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS-RQGQ 227 (282)
T ss_pred EEEEeccCCCC-------Ccc----ccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee-cccc
Confidence 33322222110 000 00011112221111 11111 12222221 1334333222221 1121
Q ss_pred --CCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 902 --SKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 --~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
..|.. ++|||+.|++...+|.|.+|++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 23544 6688999999999999999985
No 331
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.14 E-value=0.15 Score=57.14 Aligned_cols=209 Identities=20% Similarity=0.241 Sum_probs=111.3
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEE---EEcCC----CCEEEEEeC----------CCeEEEEEccCC-----eEE
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSF---SLFEP----GESLLSGSA----------DKTIGVWQMVQR-----KLE 726 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtsl---afspd----g~~LaSgs~----------DgtIrIWDl~tg-----~~~ 726 (929)
+.|++.|..+.+......+..+ ..++++ .|..+ ..+++.|.. .|.|.++++... ++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3588888887765444455433 234443 34332 355776643 288999999874 444
Q ss_pred EEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCce--eeec---cCCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 002389 727 LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIY---RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~---~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg 801 (929)
.......+++|+++.+-+.++ .++.++.|.+|++.... .... ....+.++...++.+++|.....+.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~l-v~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~---- 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRL-VVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLR---- 155 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEE-EEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEE----
T ss_pred EEEEEeecCcceEhhhhCCEE-EEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEE----
Confidence 455556677888877666663 34445777777765322 1100 1112333333333444333333333332
Q ss_pred ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-cCCCCCeEEEEEecCCCEEEEEeC
Q 002389 802 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-PEKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 802 ~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l-~~h~~~V~slafSpdg~~LaSgS~ 880 (929)
|+.........- .....+++++.|-+|+..++.+..
T Consensus 156 -------------------------------------------~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 156 -------------------------------------------YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp -------------------------------------------EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred -------------------------------------------EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 232222111111 112345788888866678999999
Q ss_pred CCcEEEEECCC-------Cc----EEEEEeCCCCeEEE---EEcC----------CEEEEEECCCcEEEe
Q 002389 881 ASSLQIWLRGT-------QQ----KVGRISAGSKITSL---LTAN----------DIVLCGTETGLIKGW 926 (929)
Q Consensus 881 DG~I~IWdl~s-------g~----~i~tl~~h~~Vtsv---s~dg----------~~LaSgs~DG~I~IW 926 (929)
+|.+.++.... +. .+..+..+..|+++ +..+ ..++.++.+|.|.+-
T Consensus 193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99999987552 22 34555556668887 3111 148899999998854
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.08 E-value=0.25 Score=52.55 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=88.9
Q ss_pred CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE-
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR- 738 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~- 738 (929)
.+++.|+..+.+.--|..+++.. .+- --...|.+-+.- -|++++.|...|.+++-+..+|...........-.+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~--We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI--WEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE--eeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 36777777777777777777532 211 112334433322 4677999999999999999999765555544443444
Q ss_pred EeccCCCEEEEEecCCeEEEEeCCCceeeecc--CCCeE---EEEEeCCEEEEEECCCcEEEEEccCC
Q 002389 739 KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIK---SMSVVQGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 739 s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~--~~~V~---sla~sdg~llsgs~Dg~I~iwDl~tg 801 (929)
...+++..++.++.|++.+..|....-..+.. +..+. +++.-++.++++...|.+.-.....+
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 36789999999999999999998743333222 22221 22222677888877777666555544
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.08 E-value=0.006 Score=71.10 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=61.2
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.....|.|.+++ ...++.|+.||+|.+||...+.. .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 467788899998 44899999999999999987632 232345567899999999999999999999999987654
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.031 Score=67.49 Aligned_cols=190 Identities=9% Similarity=0.105 Sum_probs=115.3
Q ss_pred CeEEeccCCCEEEEEecCCeEEEEeCCCce-eeecc-CCC-eEEEEEeCC--EEEEEECCC-----cEEEEEccCCccce
Q 002389 736 PIRKLDTYGKTIFASTQGHRMKVIDSSRTL-KDIYR-SKG-IKSMSVVQG--KIYIGCMDS-----SIQELAVSNNVERE 805 (929)
Q Consensus 736 ~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~-~~l~~-~~~-V~sla~sdg--~llsgs~Dg-----~I~iwDl~tg~~~~ 805 (929)
.+.++++.+..++.|+.+|.|.+++-.-.. ..+.. ... |..+...++ .+++.+.|+ .+++|++..-....
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 688899999999999999999988876333 33332 222 333433444 366655443 58999997532111
Q ss_pred ----e---cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC----CCCeEEEecCCCCCeEEEEEecCCCE
Q 002389 806 ----I---KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH----RKPQISIAPEKGTTIQAMAVVEDFIY 874 (929)
Q Consensus 806 ----i---~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~----~~~~i~~l~~h~~~V~slafSpdg~~ 874 (929)
+ ............|+.+++.|.+-...+ .+-.+|.|..+.-+ .+...........+|+++++..+++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv-~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIV-CGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEE-EEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 1 000001112367888899998844443 34478899888632 22222222234568999999998887
Q ss_pred EEEEeCCCcEEEEECCCCcE-EEEEeCCCC-eEEEEEc-CCE-EEEEECCCcEEEee
Q 002389 875 LNYNSSASSLQIWLRGTQQK-VGRISAGSK-ITSLLTA-NDI-VLCGTETGLIKGWI 927 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~-i~tl~~h~~-Vtsvs~d-g~~-LaSgs~DG~I~IWd 927 (929)
++-...-..|.+|.+....+ ...+..|+. ++|.+++ +.. +++++..+ +.+|+
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~ 241 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYD 241 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce-EEEEc
Confidence 33333467899999874443 455666644 8888776 333 55555443 77765
No 335
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.053 Score=62.56 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=133.8
Q ss_pred EEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEE
Q 002389 671 IKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAS 750 (929)
Q Consensus 671 IrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sg 750 (929)
...|+........+.+ .-.-.=+-+.|||-|.||+|--.-| |.+|--.+-. .+............|+|+.+++++-
T Consensus 192 svfwN~~~n~p~~ie~--RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-r~~RF~Hp~Vq~idfSP~EkYLVT~ 267 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEE--RENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFD-RIQRFYHPGVQFIDFSPNEKYLVTY 267 (698)
T ss_pred EEEccccCCchhhhhh--hhcceeeeEEecCCceEEEEEeccc-eeeecCccHH-HHHhccCCCceeeecCCccceEEEe
Confidence 4567766543211111 1112335688999999999988666 6789544322 1112222222345789999999886
Q ss_pred e-----------cCCeEEEEeCCC-ce----eeeccCCCeE-EEEEe-CCEEEEEECCCcEEEEEccCCccceecccccc
Q 002389 751 T-----------QGHRMKVIDSSR-TL----KDIYRSKGIK-SMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKS 812 (929)
Q Consensus 751 s-----------~Dg~V~IWDl~~-~~----~~l~~~~~V~-sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~ 812 (929)
+ ....+.|||+.. .. ..+.....++ -+.|+ |+++++.-...+|.+|+...-.....+
T Consensus 268 s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~K----- 342 (698)
T KOG2314|consen 268 SPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKK----- 342 (698)
T ss_pred cCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccc-----
Confidence 4 235899999882 22 1221222232 34566 888777666688999987652221110
Q ss_pred cccCCCCeEEEEEcCCceEEEEEecCCC----eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe---------
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSVEGS----NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS--------- 879 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~dDg----tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS--------- 879 (929)
...-..|..+.++|....++-+.|+.+ ++.+-.+.+++.+++..-|.-.=..+.|-.+|.||+.--
T Consensus 343 -slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 343 -SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred -ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence 011345667777777777777776543 556666666666655544433333466778888886532
Q ss_pred -CCCcEEEEECCCC-cEEEEEeCCCCeEEEEEc--CCEEEE
Q 002389 880 -SASSLQIWLRGTQ-QKVGRISAGSKITSLLTA--NDIVLC 916 (929)
Q Consensus 880 -~DG~I~IWdl~sg-~~i~tl~~h~~Vtsvs~d--g~~LaS 916 (929)
.-..+.|+.+... -++-.+.....|..++|. |+.+++
T Consensus 422 g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred ceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 1123445554332 234455555567778876 554443
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.94 E-value=0.17 Score=59.37 Aligned_cols=72 Identities=11% Similarity=-0.052 Sum_probs=56.2
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
...+.+.+.+|+....+.+. .||+|.+||...+... .....-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGC-EDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEecCcccceEEEEe-cCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 56777888888776665554 7899999998777433 223445678899999999999999999999999643
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.00077 Score=80.32 Aligned_cols=208 Identities=13% Similarity=0.058 Sum_probs=122.4
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CC-eEEEEEc
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DK-TIGVWQM 720 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-Dg-tIrIWDl 720 (929)
.+.|+..-+|++|+ ++.|+.|+-.|.|+++++.++.. .....+|..+|+-+.-+.||..+++.+. .. -.-+|++
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 34788999999999 45899999999999999999864 5667899999999999999998655443 33 4678998
Q ss_pred cC-CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCc--eeeec-c---CC-CeEEEEEe-CCEEEEEECCC
Q 002389 721 VQ-RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT--LKDIY-R---SK-GIKSMSVV-QGKIYIGCMDS 791 (929)
Q Consensus 721 ~t-g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~-~---~~-~V~sla~s-dg~llsgs~Dg 791 (929)
.. +.....+ .......|+.+...-+.|+......+||+..+ ..++. . .. .-++..|+ .+.++. +||
T Consensus 1175 ~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG 1249 (1516)
T KOG1832|consen 1175 SSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG 1249 (1516)
T ss_pred ccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc
Confidence 64 1111000 01112234444445556666678899998743 22211 1 11 12445565 444332 344
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
.+||++..+... .+..-. .-..=.|||.+.-.+-.+ .|||+++-.+++....- .=..+.|+..
T Consensus 1250 --vLWDvR~~~aIh------~FD~ft-~~~~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L--dqc~VtFNst 1312 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIH------RFDQFT-DYGGGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL--DQCAVTFNST 1312 (1516)
T ss_pred --eeeeeccHHHHh------hhhhhe-ecccccccCCCceEEeec------hhhhhHHHHHHhcCccc--cceEEEeccC
Confidence 378887642211 111000 000112445544444322 57999987766544322 2245677777
Q ss_pred CCEEE
Q 002389 872 FIYLN 876 (929)
Q Consensus 872 g~~La 876 (929)
|..+.
T Consensus 1313 G~VmY 1317 (1516)
T KOG1832|consen 1313 GDVMY 1317 (1516)
T ss_pred ccchh
Confidence 76554
No 338
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.77 E-value=0.0036 Score=44.19 Aligned_cols=37 Identities=38% Similarity=0.523 Sum_probs=33.4
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3566778999999999999999999999999999996
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.67 E-value=0.24 Score=59.40 Aligned_cols=241 Identities=9% Similarity=-0.030 Sum_probs=138.3
Q ss_pred EEEEEEC-CCeEEEEECCCCCeeEEEEecc-------------CCCcEEE-----EEEcCCCCEEE-EEeCCCeEEEEEc
Q 002389 661 LLCSGFS-DGSIKMWDIKKQSAMLVWDVKE-------------HRKAVTS-----FSLFEPGESLL-SGSADKTIGVWQM 720 (929)
Q Consensus 661 ~LaSGs~-DGtIrIWD~~~~~~~~i~~l~g-------------H~~~Vts-----lafspdg~~La-Sgs~DgtIrIWDl 720 (929)
+++.-.. +..|-.-+++..++..+.+++. +++.|.+ +-+.|||+.+. +.-..+.+.+.|.
T Consensus 143 ~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~ 222 (635)
T PRK02888 143 YLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDA 222 (635)
T ss_pred EEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEEC
Confidence 5555543 5556666666555444444421 1222221 22345665442 2233456777777
Q ss_pred cCCeEEEEEEeccCCCeEEeccCCCEEEEEecC----CeEEEEeCCCceeeeccCCCeEEEEE---------eCCEEEEE
Q 002389 721 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQG----HRMKVIDSSRTLKDIYRSKGIKSMSV---------VQGKIYIG 787 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~D----g~V~IWDl~~~~~~l~~~~~V~sla~---------sdg~llsg 787 (929)
.+.+.......+.......++++|+++++.+.+ +++...+... .-..+.| .+|+....
T Consensus 223 etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e---------~d~~vvfni~~iea~vkdGK~~~V 293 (635)
T PRK02888 223 ETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---------RDWVVVFNIARIEEAVKAGKFKTI 293 (635)
T ss_pred ccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc---------CceEEEEchHHHHHhhhCCCEEEE
Confidence 766554444444433455678889988888632 2333333221 1112222 25552222
Q ss_pred ECCCcEEEEEccC----CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC------------
Q 002389 788 CMDSSIQELAVSN----NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP------------ 851 (929)
Q Consensus 788 s~Dg~I~iwDl~t----g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~------------ 851 (929)
.++.|.++|..+ +.......| -+...+.+.++||+.+++..+--+.++.++|..+.+
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 367899999887 322222111 156778899999999988887677899999987644
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------CcEEEEEeCCCCe---EE-----EEEcCCE
Q 002389 852 QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT----------QQKVGRISAGSKI---TS-----LLTANDI 913 (929)
Q Consensus 852 ~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s----------g~~i~tl~~h~~V---ts-----vs~dg~~ 913 (929)
++....- ...-...+|+++|....|-.-|..|-.||+.+ ...+.++..|..+ .. ..++|++
T Consensus 367 vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~ 445 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKW 445 (635)
T ss_pred EEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCE
Confidence 2222222 22344678899999888888999999999876 3345566655321 11 2356777
Q ss_pred EEEEE
Q 002389 914 VLCGT 918 (929)
Q Consensus 914 LaSgs 918 (929)
|++..
T Consensus 446 l~~~n 450 (635)
T PRK02888 446 LVSLN 450 (635)
T ss_pred EEEcc
Confidence 77653
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.65 E-value=0.27 Score=57.65 Aligned_cols=220 Identities=10% Similarity=0.038 Sum_probs=108.9
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEE-eCCC
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVI-DSSR 763 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IW-Dl~~ 763 (929)
..+....-....+.++|+|++++.++ ||...|+.....+... .+ ...-..|.. .+.+++...+++|.++ +...
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~---~G-~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA---FG-SGLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE---EE-E-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc---cC-ceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 34444455678999999999988866 7777788754333211 11 111123555 4556777778889996 3331
Q ss_pred -ceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 002389 764 -TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 842 (929)
Q Consensus 764 -~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI 842 (929)
....+.....+..+-. |.++....++.|.+||..+++...-. +-.++..+.+++++.+.+-.+ +.++
T Consensus 100 ~~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i--------~v~~vk~V~Ws~~g~~val~t--~~~i 167 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRI--------DVSAVKYVIWSDDGELVALVT--KDSI 167 (443)
T ss_dssp -TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEE--------SS-E-EEEEE-TTSSEEEEE---S-SE
T ss_pred ccceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEE--------ecCCCcEEEEECCCCEEEEEe--CCeE
Confidence 1123333333333333 88776667779999999986543221 123478899999887776665 3468
Q ss_pred EEEECCCC-----------CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCeEEEEE
Q 002389 843 KEWRRHRK-----------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK--VGRISAGSKITSLLT 909 (929)
Q Consensus 843 ~IWDl~~~-----------~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~--i~tl~~h~~Vtsvs~ 909 (929)
.+++.+.. ........-...|.+.+|..| -++.|.. . .++.+ -.|+. +.++...--+....+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkYl--~~Ge~~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKYL--VNGETGIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEEE--ETTEEEEEEE-SS--EEEEEET
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEEE--EcCCcceEEEcCCceEEEEEEc
Confidence 88775443 012222222456888888766 4444432 2 56553 23332 444432222444444
Q ss_pred cCCEEEEEECCCcEEEee
Q 002389 910 ANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 910 dg~~LaSgs~DG~I~IWd 927 (929)
..+.++....|+.|..+.
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYE 260 (443)
T ss_dssp TTTEEEEE-TT--EEEEE
T ss_pred cCCEEEEEECCCCEEEEE
Confidence 457888888888887764
No 341
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0043 Score=68.87 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=75.0
Q ss_pred EEEEECCCCCeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc---CCEEEEE
Q 002389 842 IKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA---NDIVLCG 917 (929)
Q Consensus 842 I~IWDl~~~~~i~~l~~h~~~V~slafSpdg~-~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d---g~~LaSg 917 (929)
++..+..+-+....+.+|+..|.+++|||... .+..++.+++|+|.|+++...+..+..+..+++.+|| .++|+.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 55666555444557778888999999999777 7888999999999999999999999999899999998 4599999
Q ss_pred ECCCcEEEeec
Q 002389 918 TETGLIKGWIP 928 (929)
Q Consensus 918 s~DG~I~IWdi 928 (929)
...|.|.|||+
T Consensus 255 l~nG~VlvyD~ 265 (463)
T KOG1645|consen 255 LQNGMVLVYDM 265 (463)
T ss_pred ccCceEEEEEc
Confidence 99999999996
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.60 E-value=0.085 Score=49.39 Aligned_cols=97 Identities=26% Similarity=0.393 Sum_probs=68.9
Q ss_pred EEEEEEcC---CCC-EEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCCCceeee
Q 002389 694 VTSFSLFE---PGE-SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLKDI 768 (929)
Q Consensus 694 Vtslafsp---dg~-~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~~~~~~l 768 (929)
|+++++.. ||. .|+.|+.|..||+|+-.. ........+.++++. ..+..++.+..+|+|-+|+.....-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeee
Confidence 56666553 444 499999999999998542 222233445566654 345789999999999999987766666
Q ss_pred ccCCCeEEEEEe----CC--EEEEEECCCcEE
Q 002389 769 YRSKGIKSMSVV----QG--KIYIGCMDSSIQ 794 (929)
Q Consensus 769 ~~~~~V~sla~s----dg--~llsgs~Dg~I~ 794 (929)
.....+.++.+. +| .+++|-.+|.|-
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 667778888774 33 388898888764
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.51 E-value=0.0011 Score=76.96 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=121.2
Q ss_pred CCCEEEEEEe---C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEe----CCCeEEEEE
Q 002389 649 SGAVTALIYY---K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGS----ADKTIGVWQ 719 (929)
Q Consensus 649 ~~~Vtsl~fs---~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs----~DgtIrIWD 719 (929)
...+.|++++ + ..++.|..+|.|-+-..+.....--...++|..+.++++|++-+. .||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4567788886 3 278999999999999887643221234578899999999998544 455552 356799999
Q ss_pred ccCCeEEEE----EEe--ccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeecc--CCCeEEEEEe--CCEEEEEEC
Q 002389 720 MVQRKLELI----EVI--ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSMSVV--QGKIYIGCM 789 (929)
Q Consensus 720 l~tg~~~~~----~~~--~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~--~~~V~sla~s--dg~llsgs~ 789 (929)
+.++-.... ... .......|+..+.+.+.+|.....++++|++........ .+.+..+.+. .+..++...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 987511100 000 111123345566778889999999999999843322221 3345555554 455667777
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECC
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~ 848 (929)
||.|.+||....-...+....+.-+.....+..+++.|... .++..+.+.++|+.+|+.
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999432211111100011011123477778776532 233344477899999964
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.49 E-value=0.81 Score=51.26 Aligned_cols=228 Identities=13% Similarity=0.126 Sum_probs=125.9
Q ss_pred CCeEEEEECCCCCeeEEEEeccC-CC----cEEEEEEcCCCCEEEEE--eCCCeEEEEEccCCeEEEEEEeccCCCeEEe
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEH-RK----AVTSFSLFEPGESLLSG--SADKTIGVWQMVQRKLELIEVIATKEPIRKL 740 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH-~~----~Vtslafspdg~~LaSg--s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~ 740 (929)
.-.|.+||..+-....-..+++- .. ....++++.||++++.. +---.|.|-|+..++...... ..+...-+
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~iy 143 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLIY 143 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEEE
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEEE
Confidence 44688999998765333344331 11 12245677888875543 334567788887776533222 22222222
Q ss_pred ccCCCEEEEEecCCeEEEEeCC--Ccee-----eecc-CCCe-EEEEEe--CCEEEEEECCCcEEEEEccCCccceeccc
Q 002389 741 DTYGKTIFASTQGHRMKVIDSS--RTLK-----DIYR-SKGI-KSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAP 809 (929)
Q Consensus 741 s~~g~~L~sgs~Dg~V~IWDl~--~~~~-----~l~~-~~~V-~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~ 809 (929)
-..++.+.+.+.||.+.-..++ +... .+.. ...+ ..-++. ++.++..+.+|.|+-.|+.........+-
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 2223568888889988887776 2211 1111 1222 222333 56777789999999988877543222100
Q ss_pred --------ccccccCCCCeEEEEEcC--CceEEEEEec------CC--CeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 810 --------FKSWRLQSKPINSLVVYK--DWLYSASSSV------EG--SNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 810 --------~~~~~~~~~~I~sl~~~~--d~i~~~s~S~------dD--gtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
..-|...+-. -+++|+ +..|.+ ... .+ ..|-++|..+++.+..+... .++.+|.++.|
T Consensus 224 ~~~t~~e~~~~WrPGG~Q--~~A~~~~~~rlyvL-Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd 299 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQ--LIAYHAASGRLYVL-MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQD 299 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS---EEEETTTTEEEEE-EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESS
T ss_pred cccCccccccCcCCccee--eeeeccccCeEEEE-ecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccC
Confidence 0123322222 344453 233332 221 11 26888899999888777532 35779999987
Q ss_pred CC-EEEEE-eCCCcEEEEECCCCcEEEEEeCC
Q 002389 872 FI-YLNYN-SSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 872 g~-~LaSg-S~DG~I~IWdl~sg~~i~tl~~h 901 (929)
.+ .|.+. ..++.+.+||..+|+.++++..-
T Consensus 300 ~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 300 DKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp SS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 66 55444 45899999999999999998843
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.49 E-value=0.31 Score=57.16 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=89.6
Q ss_pred EeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-CCEEEEEECCCcEEEE-EccCCccceecccccccccC
Q 002389 739 KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQEL-AVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 739 s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iw-Dl~tg~~~~i~~~~~~~~~~ 816 (929)
+.+|+|+.+++ +.||...+|......... .+.-....|. ++++++-...+.|.++ ++.....+.+..
T Consensus 39 s~npngr~v~V-~g~geY~iyt~~~~r~k~--~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-------- 107 (443)
T PF04053_consen 39 SHNPNGRFVLV-CGDGEYEIYTALAWRNKA--FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-------- 107 (443)
T ss_dssp EE-TTSSEEEE-EETTEEEEEETTTTEEEE--EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-------------
T ss_pred EECCCCCEEEE-EcCCEEEEEEccCCcccc--cCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC--------
Confidence 56788888887 667777777733221111 1222345555 7788887778889996 443322122211
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ---- 892 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg---- 892 (929)
...+..+- .+..+.+.. ++.|.+||..++..+...... +|..+.|+++|.+++-.+ +..+.|++.+..
T Consensus 108 ~~~~~~If--~G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 108 PFSVEKIF--GGNLLGVKS---SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT-KDSIYILKYNLEAVAA 179 (443)
T ss_dssp SS-EEEEE---SSSEEEEE---TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHH
T ss_pred CcccceEE--cCcEEEEEC---CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-CCeEEEEEecchhccc
Confidence 11233333 344444443 348999999999999888543 489999999999999887 457888875433
Q ss_pred -------cEEEEEeC-CCCeEEEEEcCCEEEEEECCCcEEE
Q 002389 893 -------QKVGRISA-GSKITSLLTANDIVLCGTETGLIKG 925 (929)
Q Consensus 893 -------~~i~tl~~-h~~Vtsvs~dg~~LaSgs~DG~I~I 925 (929)
..+..+.. ..+|.+..|+++.++..+.. +++-
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY 219 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY 219 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE
T ss_pred ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE
Confidence 02333333 56688889988866665555 5543
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.45 E-value=0.0064 Score=42.83 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.6
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 852 QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 852 ~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
....+..|...|.++.|++++.++++++.||.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.94 E-value=0.13 Score=61.97 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=69.5
Q ss_pred EEEEEE----CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC
Q 002389 661 LLCSGF----SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP 736 (929)
Q Consensus 661 ~LaSGs----~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~ 736 (929)
+++.++ ..|.|.||--. +++..-.+.+- .+++++|+|..-.|++|-.-|.+.+|...+.+ .......|..+
T Consensus 29 lfAVA~fS~er~GSVtIfadt-GEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~ 103 (1416)
T KOG3617|consen 29 LFAVASFSPERGGSVTIFADT-GEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAP 103 (1416)
T ss_pred eeEEEEecCCCCceEEEEecC-CCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCC
Confidence 455444 45888888433 22211112222 35679999988889999999999999987655 33444467777
Q ss_pred eE--EeccCCCEEEEEecCCeEEEEeCC
Q 002389 737 IR--KLDTYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 737 V~--s~s~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
+. .|+++|..++++..-|.|.+|...
T Consensus 104 i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 104 IQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 76 588999999999999999999876
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.86 E-value=0.58 Score=52.48 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=89.2
Q ss_pred CeEEEEECCCC-----CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-EEEEEEeccCCCeEEecc
Q 002389 669 GSIKMWDIKKQ-----SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-LELIEVIATKEPIRKLDT 742 (929)
Q Consensus 669 GtIrIWD~~~~-----~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~-~~~~~~~~h~~~V~s~s~ 742 (929)
|.|.++++... +.+.+... ...++|++++-. +.+|+.|. .+.|.+|++...+ ............+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 89999999984 33333333 557899999865 34455544 5889999999887 666666656668888888
Q ss_pred CCCEEEEEecCCeEEEEeCCC--c-eeeecc---CCCeEEEEEe-CC-EEEEEECCCcEEEEEccC
Q 002389 743 YGKTIFASTQGHRMKVIDSSR--T-LKDIYR---SKGIKSMSVV-QG-KIYIGCMDSSIQELAVSN 800 (929)
Q Consensus 743 ~g~~L~sgs~Dg~V~IWDl~~--~-~~~l~~---~~~V~sla~s-dg-~llsgs~Dg~I~iwDl~t 800 (929)
.++++++|..-..+.++..+. . +..+.. ...+.++.+- ++ .++++..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 899999999888888775442 2 222222 3347777775 55 688899999999998863
No 349
>PHA02713 hypothetical protein; Provisional
Probab=95.81 E-value=0.55 Score=56.97 Aligned_cols=224 Identities=10% Similarity=0.048 Sum_probs=112.9
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEEccCCeEEEEEEec-cCCCeEEec
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------KTIGVWQMVQRKLELIEVIA-TKEPIRKLD 741 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D------gtIrIWDl~tg~~~~~~~~~-h~~~V~s~s 741 (929)
..+..||..+.+...+..++..... .+++. -++...+.||.+ ..+..||..++......... .........
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 3567788888765433333221111 12222 256666777754 34778888777542211111 111112233
Q ss_pred cCCCEEEEEecCC-----eEEEEeCCCceeee-cc---CCCeEEEEEeCCEEEE-EECC---------------------
Q 002389 742 TYGKTIFASTQGH-----RMKVIDSSRTLKDI-YR---SKGIKSMSVVQGKIYI-GCMD--------------------- 790 (929)
Q Consensus 742 ~~g~~L~sgs~Dg-----~V~IWDl~~~~~~l-~~---~~~V~sla~sdg~lls-gs~D--------------------- 790 (929)
.++...+.|+.++ .+..||.....-.. .. ...-.+++..+|++++ |+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4555556666543 47888877432221 11 1111233334788554 6544
Q ss_pred --CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECCC-CCeE--EEecCCCC
Q 002389 791 --SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHR-KPQI--SIAPEKGT 861 (929)
Q Consensus 791 --g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD----gtI~IWDl~~-~~~i--~~l~~h~~ 861 (929)
..+..||..+++-..+.+. . ....-..+....+.+|.+++..+. ..+..||..+ ..-. ..+.....
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m-~----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNF-W----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccceEEEECCCCCeEeecCCC-C----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2467788777654433211 0 011122455666777777553211 2467899887 4422 22222222
Q ss_pred CeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCC
Q 002389 862 TIQAMAVVEDFIYLNYNSSAS--SLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS~DG--~I~IWdl~sg~~i~tl~~h 901 (929)
....++ -+|+..+.||.|| .+..||..+.+.-..-..|
T Consensus 505 ~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 505 ALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cceeEE--ECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 222222 3788889999888 7788887776654333333
No 350
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.75 E-value=0.46 Score=58.56 Aligned_cols=335 Identities=17% Similarity=0.190 Sum_probs=199.1
Q ss_pred CcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc-ch-hhHHHHHhcCCC-----chhhhhccchhHHH
Q 002389 167 SKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-VP-EAAILIYLIKPS-----PTEIKTLELLPTLV 239 (929)
Q Consensus 167 s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~-~~-~~~vl~~l~~~~-----~~~~~~~~~~~~~~ 239 (929)
-+-+++++.++++|..+. .|..+.....++| -+..++..|+++ .. --.++..|-+-+ +.+|.+.+.+|.|+
T Consensus 260 ~kQeqLlrv~~~lLlNLA-ed~~ve~kM~~~~-iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLA-EDPRVELKMVNKG-IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHHHh-cChHHHHHHHhcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 356889999999988875 4556666666544 477788899885 22 222233333333 88999999999999
Q ss_pred HHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhh
Q 002389 240 EVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQ 319 (929)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~ 319 (929)
+.+.++++. . ...|+.+|-.| +|| .....++++.|+++.|+.-+..++..+ .+..||- -+-
T Consensus 338 kLl~s~~~~---l-------~~~aLrlL~NL--Sfd----~~~R~~mV~~GlIPkLv~LL~d~~~~~--val~iLy-~LS 398 (708)
T PF05804_consen 338 KLLPSENED---L-------VNVALRLLFNL--SFD----PELRSQMVSLGLIPKLVELLKDPNFRE--VALKILY-NLS 398 (708)
T ss_pred HHhcCCCHH---H-------HHHHHHHHHHh--CcC----HHHHHHHHHCCCcHHHHHHhCCCchHH--HHHHHHH-Hhc
Confidence 999875532 1 24455555555 554 344667889999999999998765443 3444444 333
Q ss_pred ccCcchhHHHhhcCccchhhhhhcC-CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhh
Q 002389 320 FDGQCRKYLSEFTAVAPLACLLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQ 398 (929)
Q Consensus 320 ~d~~cr~~ia~~~~~~~~~~l~~~~-~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~ 398 (929)
.|..||+.++..-....++++|-.+ +......++.++.-|-+ +++.+..+ .++|++.. |+-...+. +-
T Consensus 399 ~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm----~~g~gL~~---L~~ra~~~---~D 467 (708)
T PF05804_consen 399 MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLM----CEGNGLQS---LMKRALKT---RD 467 (708)
T ss_pred cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHH----HhcCcHHH---HHHHHHhc---cc
Confidence 3667999999887777788866555 44444555666655544 44444333 34444422 22222221 12
Q ss_pred HHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCchh
Q 002389 399 LLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWL 478 (929)
Q Consensus 399 ~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~~~ 478 (929)
|+...++=-+=. -+|.-...| .+.|.-|+.++..+++...+..|-=+|.||.= ++ +.-+-+++..+|.+--.
T Consensus 468 ~lLlKlIRNiS~-h~~~~k~~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~----~~--ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 468 PLLLKLIRNISQ-HDGPLKELF-VDFIGDLAKIVSSGDSEEFVVECLGILANLTI----PD--LDWAQLLQEYNLLPWLK 539 (708)
T ss_pred HHHHHHHHHHHh-cCchHHHHH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc----CC--cCHHHHHHhCCHHHHHH
Confidence 333222211110 121112234 45788899999988888888877777777752 22 23344677777766543
Q ss_pred hhhhccCCcccchhhhh----chhhhhHHHHHHHHhcCh--hHHHHHHhhhhcCCccccccccchhHhhhcc
Q 002389 479 QNMIRNFDWLDQSLQDR----GVDSWSSKIAKSIIEIGK--PIYYALEKGLKSKTKSVCRDSLTTIAWLSFE 544 (929)
Q Consensus 479 ~~~~~~~~~~~~~~~~~----~~~~w~~~~~~~l~~~g~--~~l~aL~~~l~s~~~~l~~~cL~~~~Wl~~~ 544 (929)
....+... .|+-.-|. +.=.-..+.|..|.++|- .+.+.|.. +....+++-.++.+.++|...
T Consensus 540 ~~L~~g~~-~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~--kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 540 DLLKPGAS-EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNA--KQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHhCCCCC-ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHh--hCchHHHHHHHHHHHHHHHcC
Confidence 33222211 12222222 223345677888888883 45566533 345688888888788776554
No 351
>PHA02713 hypothetical protein; Provisional
Probab=95.71 E-value=0.56 Score=56.94 Aligned_cols=210 Identities=11% Similarity=0.114 Sum_probs=103.0
Q ss_pred eEEEEEccCCeEEEEEEeccC-CCeEEeccCCCEEEEEecC------CeEEEEeCCCceee-ecc---CCCeEEEEEeCC
Q 002389 714 TIGVWQMVQRKLELIEVIATK-EPIRKLDTYGKTIFASTQG------HRMKVIDSSRTLKD-IYR---SKGIKSMSVVQG 782 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h~-~~V~s~s~~g~~L~sgs~D------g~V~IWDl~~~~~~-l~~---~~~V~sla~sdg 782 (929)
.+..||..+++.......... ........++...+.|+.+ ..+..||....... ... ...-.+++..+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 455677666554322111111 1111222345555555543 34777887643221 111 111224444588
Q ss_pred EEEE-EECCC-----cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC------------------
Q 002389 783 KIYI-GCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE------------------ 838 (929)
Q Consensus 783 ~lls-gs~Dg-----~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d------------------ 838 (929)
++++ ||.++ .+..||..+++...+.+.. . ...-.......+.+|.+++...
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp-~----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP-I----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCC-c----ccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 8554 66543 4788998876544332110 0 1111123344566666654211
Q ss_pred ---CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCC-C--cEEEEEeCCCC-eE
Q 002389 839 ---GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA------SSLQIWLRGT-Q--QKVGRISAGSK-IT 905 (929)
Q Consensus 839 ---DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D------G~I~IWdl~s-g--~~i~tl~~h~~-Vt 905 (929)
-.++..||..+..-...-.-.......-+..-+|+..+.||.+ ..+..||..+ . +.+..+..... ..
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 1357788887765322211111112222223356666777654 2467899776 3 33444443322 34
Q ss_pred EEEEcCCEEEEEECCC--cEEEeec
Q 002389 906 SLLTANDIVLCGTETG--LIKGWIP 928 (929)
Q Consensus 906 svs~dg~~LaSgs~DG--~I~IWdi 928 (929)
.+..+|++.++||.|| .+..||+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCc
Confidence 4567889999999998 5655554
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.63 E-value=0.089 Score=62.53 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=81.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC--eEEeccCCCEEEEEecCCeEEEEeCCCc---
Q 002389 690 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP--IRKLDTYGKTIFASTQGHRMKVIDSSRT--- 764 (929)
Q Consensus 690 H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~--V~s~s~~g~~L~sgs~Dg~V~IWDl~~~--- 764 (929)
|...|.--+++..+++++.|+.-|.+.+|+-..+........+.... +.+++++..++++|+..|.|.++.++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44456556677889999999999999999987776443333222222 2357888889999999999999987731
Q ss_pred -eeeec-----cCCCeEEEEEe-CCE-EEEEECCCcEEEEEccC
Q 002389 765 -LKDIY-----RSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSN 800 (929)
Q Consensus 765 -~~~l~-----~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~t 800 (929)
...+. +...|++++|+ ++. +++|...|.|....+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111 24469999998 665 99999999999888876
No 353
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.61 E-value=0.72 Score=56.08 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=121.7
Q ss_pred EEEEEECC------CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEEccCCeEEEE
Q 002389 661 LLCSGFSD------GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD------KTIGVWQMVQRKLELI 728 (929)
Q Consensus 661 ~LaSGs~D------GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D------gtIrIWDl~tg~~~~~ 728 (929)
.++.||.+ ..+..+|..++.......+.. ...-.+++.. +|...++||.| .++..||..++++..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 45566665 468889999886654544442 3334444443 45667888888 357788888776432
Q ss_pred EEeccCCCeE--E-eccCCCEEEEEecCC-----eEEEEeCCCceeeeccC--CCeE--EEEEeCCEEEE-EECC-----
Q 002389 729 EVIATKEPIR--K-LDTYGKTIFASTQGH-----RMKVIDSSRTLKDIYRS--KGIK--SMSVVQGKIYI-GCMD----- 790 (929)
Q Consensus 729 ~~~~h~~~V~--s-~s~~g~~L~sgs~Dg-----~V~IWDl~~~~~~l~~~--~~V~--sla~sdg~lls-gs~D----- 790 (929)
......+-. + -..+|...++|+.|| ++-.||.....-..... .... .++..+|++++ |+.+
T Consensus 364 -~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 364 -VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred -cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 111111111 1 234566677777776 56677776433332221 1222 33334888554 6543
Q ss_pred -CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEEecCCCCCeEEE
Q 002389 791 -SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISIAPEKGTTIQAM 866 (929)
Q Consensus 791 -g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~~i~~l~~h~~~V~sl 866 (929)
.++..||..++....+.+... ...-..++...+.+|.+++..+ ..++..||..+.+.... ..-..+....
T Consensus 443 l~sve~YDP~t~~W~~~~~M~~-----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~ 516 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPMNT-----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAV 516 (571)
T ss_pred cceEEEEcCCCCceeecCCccc-----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccc
Confidence 457788888876554432111 1122236666777887766422 23578899877764332 1111111111
Q ss_pred E-EecCCCEEEEEeCCC-----cEEEEECCCCc
Q 002389 867 A-VVEDFIYLNYNSSAS-----SLQIWLRGTQQ 893 (929)
Q Consensus 867 a-fSpdg~~LaSgS~DG-----~I~IWdl~sg~ 893 (929)
. ..-+++..+.|+.|| +|..||..+.+
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 1 123567778888775 46667655443
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=2.3 Score=47.51 Aligned_cols=203 Identities=13% Similarity=0.017 Sum_probs=104.7
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC-ce-eeecc----
Q 002389 698 SLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-TL-KDIYR---- 770 (929)
Q Consensus 698 afspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~-~~-~~l~~---- 770 (929)
.|.++... +.+--..+.|.-|+..+++.........-..+..+...+ .++++.. .+.+++... .. ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCC-eEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 45666664 445555677778887766543333222222222222222 3333222 233444331 11 11111
Q ss_pred --CCCeEEEEEe-CCEEEEEECC------------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 771 --SKGIKSMSVV-QGKIYIGCMD------------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 771 --~~~V~sla~s-dg~llsgs~D------------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
....+...+. +|.++++... |.++.+|.. +.... ....+-...+.++++|++..+.-.
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~------l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVR------LLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEE------eecCcEEecCceEECCCCCEEEEE
Confidence 1223344444 7777766544 234444432 22211 112223345667788877544333
Q ss_pred ecCCCeEEEEECCC--CC-----eEEEecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEeCC-CCeEE
Q 002389 836 SVEGSNIKEWRRHR--KP-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-SLQIWLRGTQQKVGRISAG-SKITS 906 (929)
Q Consensus 836 S~dDgtI~IWDl~~--~~-----~i~~l~~h~~~V~slafSpdg~~LaSgS~DG-~I~IWdl~sg~~i~tl~~h-~~Vts 906 (929)
....+.|.-|+... +. .......+.+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+ ..+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 32346677666542 11 1112222334555677788888886555554 99999998 9999999988 55888
Q ss_pred EEEcC
Q 002389 907 LLTAN 911 (929)
Q Consensus 907 vs~dg 911 (929)
++|-|
T Consensus 260 ~~FgG 264 (307)
T COG3386 260 PAFGG 264 (307)
T ss_pred ceEeC
Confidence 88875
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.055 Score=63.57 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=63.1
Q ss_pred CCEEEEEEeCC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 650 GAVTALIYYKG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-SFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 650 ~~Vtsl~fs~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vt-slafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
-.|.-+.|++. .+|++..+|.|.+....-. .+.+++-|...++ +++|.|||+.|+.|-.||+|++-|+.+|..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 45778889855 8999999999999988843 3788877888888 999999999999999999999999998764
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.55 E-value=0.88 Score=51.86 Aligned_cols=238 Identities=9% Similarity=0.022 Sum_probs=122.8
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCC------------
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE------------ 735 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~------------ 735 (929)
.+.+.|||+.+++. ..+......+....|+|+|+.++-.. ++.|.+++..++........+ ..
T Consensus 22 ~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTEE---EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHH
T ss_pred ceeEEEEecCCCce---EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecc
Confidence 35688999999753 33433356788999999999988776 788999998877543333323 11
Q ss_pred -------CeEEeccCCCEEEEEecC-CeEEEEeCC---CceeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCc
Q 002389 736 -------PIRKLDTYGKTIFASTQG-HRMKVIDSS---RTLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 736 -------~V~s~s~~g~~L~sgs~D-g~V~IWDl~---~~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~ 802 (929)
...-|+|++++|+....| ..|..+.+. .... .-..+..+.++ -|. . ..-.+.++|+.+++
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~~ 169 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRYPKAGDPN----PRVSLFVVDLASGK 169 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE--BTTS-------EEEEEEEESSSTC
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCcccccccCCCCCcC----CceEEEEEECCCCc
Confidence 112367888888776544 344433321 0000 00124445544 121 1 11246678887776
Q ss_pred cceecccccccccCCCCeEEEEEcCCce-EEEEEecCC---CeEEEEECCCCCeEEEec-CCCCCe---EEEEEe-cCC-
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEG---SNIKEWRRHRKPQISIAP-EKGTTI---QAMAVV-EDF- 872 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dD---gtI~IWDl~~~~~i~~l~-~h~~~V---~slafS-pdg- 872 (929)
...+..+. ........+..+.+.+++. +.+.+...+ ..+.++|..++....... ....+| ....|. +++
T Consensus 170 ~~~~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~ 248 (353)
T PF00930_consen 170 TTELDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN 248 (353)
T ss_dssp CCEE---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS
T ss_pred EEEeeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC
Confidence 54443221 1123355677788877766 555554333 245667776655432222 122222 355554 555
Q ss_pred CEEEEEeCCCcEEEE--ECCCCcEEEEEeCCC-CeEE-EEEc--CC-EEEEEEC
Q 002389 873 IYLNYNSSASSLQIW--LRGTQQKVGRISAGS-KITS-LLTA--ND-IVLCGTE 919 (929)
Q Consensus 873 ~~LaSgS~DG~I~IW--dl~sg~~i~tl~~h~-~Vts-vs~d--g~-~LaSgs~ 919 (929)
.++.....||.-+|| +...+. ...+..+. .|+. +.++ ++ ..++|..
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 455555577766665 454444 33444443 3766 3455 34 4445554
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.48 E-value=0.51 Score=44.29 Aligned_cols=96 Identities=24% Similarity=0.317 Sum_probs=63.2
Q ss_pred EEEEEEe----C--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 652 VTALIYY----K--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 652 Vtsl~fs----~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
|+++++. + +.|+.||.|..||||+-.. .+.++.. ++.|++++-... ..++.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee-
Confidence 6777775 3 3799999999999999774 3666654 456888876665 568888999999999864322
Q ss_pred EEEEEeccCCCeEE---eccCC--C-EEEEEecCCeEE
Q 002389 726 ELIEVIATKEPIRK---LDTYG--K-TIFASTQGHRMK 757 (929)
Q Consensus 726 ~~~~~~~h~~~V~s---~s~~g--~-~L~sgs~Dg~V~ 757 (929)
.....+..+.+ +..++ . .+++|-.+|.|-
T Consensus 75 ---WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ---WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 12223333443 23232 2 577777777653
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.48 E-value=4.5 Score=43.90 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=117.8
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec--cCCCEEEEEecCCeEEEEeCCCcee------------
Q 002389 701 EPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD--TYGKTIFASTQGHRMKVIDSSRTLK------------ 766 (929)
Q Consensus 701 pdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s--~~g~~L~sgs~Dg~V~IWDl~~~~~------------ 766 (929)
..++.|+.|..+| +.+++....... .......+|..+. +.-+.+++.+ |+.+.++++.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP--TRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc--eeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678899999898 889988322211 1112222366543 4445555554 49999999872111
Q ss_pred -----eeccCCCeEEEE---Ee-CCEEEEEECCCcEEEEEccCCcc---ceecccccccccCCCCeEEEEEcCCceEEEE
Q 002389 767 -----DIYRSKGIKSMS---VV-QGKIYIGCMDSSIQELAVSNNVE---REIKAPFKSWRLQSKPINSLVVYKDWLYSAS 834 (929)
Q Consensus 767 -----~l~~~~~V~sla---~s-dg~llsgs~Dg~I~iwDl~tg~~---~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s 834 (929)
.+...+++...+ .. .+..++......|.+|....+.. ... +.+.. ...+..+.+.++.+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~----ke~~l-p~~~~~i~~~~~~i~v~- 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL----KEISL-PDPPSSIAFLGNKICVG- 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee----EEEEc-CCCcEEEEEeCCEEEEE-
Confidence 122234555555 12 33456666666888888876321 111 11111 35677777775554433
Q ss_pred EecCCCeEEEEECCCCCeEEEecCCC-----------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEeCC
Q 002389 835 SSVEGSNIKEWRRHRKPQISIAPEKG-----------TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG--RISAG 901 (929)
Q Consensus 835 ~S~dDgtI~IWDl~~~~~i~~l~~h~-----------~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~--tl~~h 901 (929)
. .+...+.|+.++.....+.... .....+.--+++.+|++. |. +-+|=-..|++.+ .+.-.
T Consensus 155 ~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~W~ 228 (275)
T PF00780_consen 155 T---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQWS 228 (275)
T ss_pred e---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cc-eEEEEcCCCCcCcccEEEcC
Confidence 2 2457888888766544332111 112223233456777754 33 3344333555443 55555
Q ss_pred CCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 902 SKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 ~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
....++++...+|+..+.++ |.||++
T Consensus 229 ~~p~~~~~~~pyli~~~~~~-iEV~~~ 254 (275)
T PF00780_consen 229 SAPQSVAYSSPYLIAFSSNS-IEVRSL 254 (275)
T ss_pred CchhEEEEECCEEEEECCCE-EEEEEC
Confidence 56778888877888777655 999985
No 359
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.43 E-value=1.1 Score=54.58 Aligned_cols=211 Identities=11% Similarity=0.104 Sum_probs=110.2
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeEE-eccCCCEEEEEecC------CeEEEEeCCCceee-ecc---CCCeEEEEEeC
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIRK-LDTYGKTIFASTQG------HRMKVIDSSRTLKD-IYR---SKGIKSMSVVQ 781 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~s-~s~~g~~L~sgs~D------g~V~IWDl~~~~~~-l~~---~~~V~sla~sd 781 (929)
..+..+|..++...............+ ...++...++|+.| .++..||.....-. ... ...-..++.-+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 467788887775433222222222222 33455666677777 26677777633211 111 12223444458
Q ss_pred CEEE-EEECCC-----cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC----CeEEEEECCCCC
Q 002389 782 GKIY-IGCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHRKP 851 (929)
Q Consensus 782 g~ll-sgs~Dg-----~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD----gtI~IWDl~~~~ 851 (929)
|.++ +|+.|| ++..||..+.+...+.+. . ....-..+....+.+|.+.+.... .++..||..++.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m----~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM----L-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCC----C-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 8855 477775 467777777554333211 0 012223344456666666543211 468889987776
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCc-----EEEEECCCCcEEEE--EeCC-CCeEEEEEcCCEEEEEECCCc-
Q 002389 852 QISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-----LQIWLRGTQQKVGR--ISAG-SKITSLLTANDIVLCGTETGL- 922 (929)
Q Consensus 852 ~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~-----I~IWdl~sg~~i~t--l~~h-~~Vtsvs~dg~~LaSgs~DG~- 922 (929)
-...-.-.......-.-.-++...+.||.|+. |..||..+.+.... .... +.+.....++...+.||.||.
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 33222111111111122336777788887763 77888776555332 3222 224445677888899999874
Q ss_pred ----EEEeec
Q 002389 923 ----IKGWIP 928 (929)
Q Consensus 923 ----I~IWdi 928 (929)
|..||+
T Consensus 536 ~l~~ve~ydp 545 (571)
T KOG4441|consen 536 NLNTVECYDP 545 (571)
T ss_pred ccceeEEcCC
Confidence 555554
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.34 Score=56.10 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=92.7
Q ss_pred CCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCC-------EEEEEecCCeEEEEeCCCce--------
Q 002389 702 PGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGK-------TIFASTQGHRMKVIDSSRTL-------- 765 (929)
Q Consensus 702 dg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~-------~L~sgs~Dg~V~IWDl~~~~-------- 765 (929)
+.+. +.++..-..++-.|++.|+.+.......+-++..+.++.+ .-+.|-.++.|.-||++-.-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3344 4566666678888999998665544444435555655433 34556678889999987211
Q ss_pred -eeeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 002389 766 -KDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 843 (929)
Q Consensus 766 -~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~ 843 (929)
+.+.......|.+-. +|.+++|+.+|.|++||-..-..++. +.+-+.+|..+....++.++++.. +..+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTA------lPgLG~~I~hVdvtadGKwil~Tc--~tyLl 495 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTA------LPGLGDAIKHVDVTADGKWILATC--KTYLL 495 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhc------ccccCCceeeEEeeccCcEEEEec--ccEEE
Confidence 122224456777776 99999999999999999843233333 244588999999999999988775 55666
Q ss_pred EEEC
Q 002389 844 EWRR 847 (929)
Q Consensus 844 IWDl 847 (929)
+.+.
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 6653
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.39 E-value=4.8 Score=48.57 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=44.2
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEec--cCCC--cEEEEEEcCCCCEEEEEe------CCCeEEEEEccCCe
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVK--EHRK--AVTSFSLFEPGESLLSGS------ADKTIGVWQMVQRK 724 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~--gH~~--~Vtslafspdg~~LaSgs------~DgtIrIWDl~tg~ 724 (929)
+++.++.++.++.|+.+.-.|.++++. +.... .+.. .+++--.--++ .++.+. .+|.|.-+|..+|+
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~--~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKV--VWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCE--EeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 355677888899999999999999864 33332 2211 12211001133 455443 26899999999998
Q ss_pred EEEE
Q 002389 725 LELI 728 (929)
Q Consensus 725 ~~~~ 728 (929)
....
T Consensus 193 ~lW~ 196 (527)
T TIGR03075 193 LVWR 196 (527)
T ss_pred eeEe
Confidence 6544
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.34 E-value=2.2 Score=51.59 Aligned_cols=90 Identities=10% Similarity=-0.001 Sum_probs=62.9
Q ss_pred CCeEEEEECCC----CCeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcE------------EEEEeCC
Q 002389 839 GSNIKEWRRHR----KPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQK------------VGRISAG 901 (929)
Q Consensus 839 DgtI~IWDl~~----~~~i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~~------------i~tl~~h 901 (929)
++.|.+.|..+ +..+..+..-......+.++|||+++++++ .+++|.|.|+.+.+. +.+.+.+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 56899999887 322333333445678899999999987665 689999999988653 4455544
Q ss_pred CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 902 SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 ~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
-.-...+|+ |+...|---|..|-.|++
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 223334555 557777788999999985
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=1.4 Score=47.75 Aligned_cols=185 Identities=16% Similarity=0.154 Sum_probs=100.2
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEEccCCeEEEEEEeccCCC--eEEeccCCCEEEEEecCCeEEEE-----------
Q 002389 698 SLFEPGESLLSGSAD-----KTIGVWQMVQRKLELIEVIATKEP--IRKLDTYGKTIFASTQGHRMKVI----------- 759 (929)
Q Consensus 698 afspdg~~LaSgs~D-----gtIrIWDl~tg~~~~~~~~~h~~~--V~s~s~~g~~L~sgs~Dg~V~IW----------- 759 (929)
.|||||.+|+..-.| |.|-|||.+.+-...-....|.-. -..+.++|+.++.+. |.|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 699999998865443 789999997543222222222222 234678888877663 223222
Q ss_pred ---------e-CCCce---eeec---cCCCeEEEEEe-CCEEEEEEC------CCcEEEEEccCCcc-ceeccccccccc
Q 002389 760 ---------D-SSRTL---KDIY---RSKGIKSMSVV-QGKIYIGCM------DSSIQELAVSNNVE-REIKAPFKSWRL 815 (929)
Q Consensus 760 ---------D-l~~~~---~~l~---~~~~V~sla~s-dg~llsgs~------Dg~I~iwDl~tg~~-~~i~~~~~~~~~ 815 (929)
| ..+.+ .++. ..-.+..++.. ||.+++|+. |..--+=-...++. ..+..+...|..
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 2 11111 1111 12246666665 788888763 11111111122222 112222222333
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
-...|-+++.+.+.-+.+..||.++...+||..++.++....-. ....++- ...-++..+.+|.+..+.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence 35667788888777777778899999999999999876543211 1222322 223344445588888774
No 364
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.16 E-value=11 Score=47.17 Aligned_cols=274 Identities=10% Similarity=0.045 Sum_probs=138.5
Q ss_pred CCCCCEEEEEEe-----CC---EEEEEECCCeEEEEECCCCCeeEEEE-e--ccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389 647 KCSGAVTALIYY-----KG---LLCSGFSDGSIKMWDIKKQSAMLVWD-V--KEHRKAVTSFSLFEPGESLLSGSADKTI 715 (929)
Q Consensus 647 gH~~~Vtsl~fs-----~~---~LaSGs~DGtIrIWD~~~~~~~~i~~-l--~gH~~~Vtslafspdg~~LaSgs~DgtI 715 (929)
.-+..|.|+.++ ++ +++.|.++..+.+--....-....+. + +.-+..|.-..|-.|+.+|.++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 346789999997 22 78999988877766544332222222 1 1123445555666778899999999998
Q ss_pred EEEE--ccCCeEEEEE--EeccCCC-eEEeccCCCEEEEEecCCeEEEEeCCCceeeecc-CCCeEEEE-Ee-C-C-EEE
Q 002389 716 GVWQ--MVQRKLELIE--VIATKEP-IRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-SKGIKSMS-VV-Q-G-KIY 785 (929)
Q Consensus 716 rIWD--l~tg~~~~~~--~~~h~~~-V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~-~~~V~sla-~s-d-g-~ll 785 (929)
.-+. ..+|...... ..+...+ ...|+..+..-+.+..|.-..+|.-++.+...+- -+.+..++ |. + . .-+
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 7664 4455432222 2233332 2357665555444555555555655543322211 11122221 11 1 1 123
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec----------CC---CeEEEEECCCCCe
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV----------EG---SNIKEWRRHRKPQ 852 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~----------dD---gtI~IWDl~~~~~ 852 (929)
+.+..+.+.+.-+..-+...++ . -.-+.+...+.+++........+. +. ..++++|.++-+.
T Consensus 688 ~~~~~~~l~i~tid~iqkl~ir----t-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIR----T-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred EEecCCceEEEEecchhhccee----e-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 3344455555554432222111 1 011344455555553222222211 01 2567777776654
Q ss_pred EEEecCC-C---CCeEEEEEecC-CCEEEEEeC----------CCcEEEEECCCCcE---EEEEeCCCCeEEE-EEcCCE
Q 002389 853 ISIAPEK-G---TTIQAMAVVED-FIYLNYNSS----------ASSLQIWLRGTQQK---VGRISAGSKITSL-LTANDI 913 (929)
Q Consensus 853 i~~l~~h-~---~~V~slafSpd-g~~LaSgS~----------DG~I~IWdl~sg~~---i~tl~~h~~Vtsv-s~dg~~ 913 (929)
.....-. . ..|.+..|..| +.+++.|.. .|.|.||....++. +......+.|.++ .|+|++
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkl 842 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKL 842 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeE
Confidence 4322111 1 14555568777 777777652 36777777655333 3344444557774 488888
Q ss_pred EEEEECCCcEEEee
Q 002389 914 VLCGTETGLIKGWI 927 (929)
Q Consensus 914 LaSgs~DG~I~IWd 927 (929)
+|.-+. .|++|+
T Consensus 843 lA~In~--~vrLye 854 (1096)
T KOG1897|consen 843 LAGINQ--SVRLYE 854 (1096)
T ss_pred EEecCc--EEEEEE
Confidence 875544 566654
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.12 E-value=8.9 Score=44.76 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=99.4
Q ss_pred eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccC---CCeE-E----ec
Q 002389 670 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK---EPIR-K----LD 741 (929)
Q Consensus 670 tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~---~~V~-s----~s 741 (929)
.|+||+..+.. +..+.--.+.|.++.|+.+ ..|+.-..||+++++|+. |+. ....+.. ..|. + ..
T Consensus 62 ~I~iys~sG~l---l~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL---LSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE---eEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence 59999998753 3444333389999999875 456667789999999986 332 1111111 1111 1 12
Q ss_pred cCCCEEEEEecCCeEEEEeC-CCcee--ee---cc-------CCCeEEE-EEe--CCEEEEEECCCcEEEEEccCCccce
Q 002389 742 TYGKTIFASTQGHRMKVIDS-SRTLK--DI---YR-------SKGIKSM-SVV--QGKIYIGCMDSSIQELAVSNNVERE 805 (929)
Q Consensus 742 ~~g~~L~sgs~Dg~V~IWDl-~~~~~--~l---~~-------~~~V~sl-a~s--dg~llsgs~Dg~I~iwDl~tg~~~~ 805 (929)
..+..++..+.++.+.+.+- ..... .. .. ......+ .+. ....+....++.+...+-.....
T Consensus 135 ~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 135 FYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred cCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 22233555555665554432 21111 11 10 0001111 122 22233444555555444332100
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC-CCCeEEEEEecCCC
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK-GTTIQAMAVVEDFI 873 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h-~~~V~slafSpdg~ 873 (929)
+ ...+++..++.+|++.+++.+. ++|.+.+.+.+-.+....+... ......+.|.-+..
T Consensus 213 i--------~~~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 I--------DSDGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c--------cCCCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0 1246899999999999888887 6678888887666555444433 34556777765543
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.11 Score=61.18 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=69.4
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 002389 818 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ-AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 896 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~-slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~ 896 (929)
..+..+.++|..-..+... .+|.+-+...+ .+.+.++.-|+.+++ +++|.|||+.||.|-.||+|++-|..+|..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t-~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRT-EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheec-cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3455667777655544433 56778888877 444566666777777 99999999999999999999999999999888
Q ss_pred E--EeCCCCeEEEEEc
Q 002389 897 R--ISAGSKITSLLTA 910 (929)
Q Consensus 897 t--l~~h~~Vtsvs~d 910 (929)
. +....+|.++.|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 7 4444568887776
No 367
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.06 E-value=6.3 Score=42.70 Aligned_cols=200 Identities=9% Similarity=0.032 Sum_probs=102.1
Q ss_pred EEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeC
Q 002389 685 WDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
+.+.+-...+..++|+|+++. +++....+.|...+. +|+.............-. +..++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 355666677999999998776 455566778877776 466544433322222223 3344445554445788988887
Q ss_pred CC---c-----eeeec------cCCCeEEEEEe--CCEEEEEECCCcEEEEEccC---Cccceeccc--ccccccCCCCe
Q 002389 762 SR---T-----LKDIY------RSKGIKSMSVV--QGKIYIGCMDSSIQELAVSN---NVEREIKAP--FKSWRLQSKPI 820 (929)
Q Consensus 762 ~~---~-----~~~l~------~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~t---g~~~~i~~~--~~~~~~~~~~I 820 (929)
.. . ...+. .+.++-.++|. .+.++++-......+|.+.. +........ ...-......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 41 1 11111 24568899997 56788888777777777654 111111000 00001223457
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC---------CCeEEEEEecCCCEEEEEeCCCcEEEE
Q 002389 821 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG---------TTIQAMAVVEDFIYLNYNSSASSLQIW 887 (929)
Q Consensus 821 ~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~---------~~V~slafSpdg~~LaSgS~DG~I~IW 887 (929)
..+.++|..-.....|..+..+..+|.. |.++..+.-.. ...-.|+|.++|+..+++ +-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 7888888765444456678889999944 44444332111 256789999999766654 55555544
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.92 E-value=7 Score=42.52 Aligned_cols=181 Identities=9% Similarity=0.003 Sum_probs=107.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCC--eEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCeEEEEeCCC--ceee
Q 002389 693 AVTSFSLFEPGESLLSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMKVIDSSR--TLKD 767 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~Dg--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~~ 767 (929)
-...+.|..+|..+-|.|.-| .|+.+|+.+|+...........---.+...++.++-.+ .++...+||.+. ...+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 345788878888888888777 79999999998654433332221223455566666665 567899999873 3344
Q ss_pred eccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccc--cCCCCeEEEEEcCCceEEEEEecCCCeEEEE
Q 002389 768 IYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGSNIKEW 845 (929)
Q Consensus 768 l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~--~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IW 845 (929)
+.....-+.++..+..++.......++.+|..+-+..... .+.. ..-..++.+.+..+.+++=.+. ...|...
T Consensus 126 ~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i---~V~~~g~pv~~LNELE~i~G~IyANVW~--td~I~~I 200 (264)
T PF05096_consen 126 FPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTI---QVTDNGRPVSNLNELEYINGKIYANVWQ--TDRIVRI 200 (264)
T ss_dssp EE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEE---E-EETTEE---EEEEEEETTEEEEEETT--SSEEEEE
T ss_pred EecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEE---EEEECCEECCCcEeEEEEcCEEEEEeCC--CCeEEEE
Confidence 4444455566644555777777888999998764332111 1111 1123456677777777776664 3478888
Q ss_pred ECCCCCeEEEec------------CC---CCCeEEEEEecCCCEE-EEE
Q 002389 846 RRHRKPQISIAP------------EK---GTTIQAMAVVEDFIYL-NYN 878 (929)
Q Consensus 846 Dl~~~~~i~~l~------------~h---~~~V~slafSpdg~~L-aSg 878 (929)
|..+|.+...+. .+ ..-.+.|+|.|+...+ +||
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999998766542 01 3457899999866554 554
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.91 E-value=1.6 Score=51.00 Aligned_cols=170 Identities=11% Similarity=-0.031 Sum_probs=91.9
Q ss_pred eccCCCcEEEEEEcCCCCEEEEE---eCC-CeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCeEEEEeC
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSG---SAD-KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMKVIDS 761 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSg---s~D-gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V~IWDl 761 (929)
+..-...+..-.|+|+++.++-. ... ..+.++|+.+++...............|+|+|+.++... .||...
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~---- 263 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPD---- 263 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCcc----
Confidence 33334567777899999875533 222 468899999887544444344445557888888766554 334222
Q ss_pred CCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC-
Q 002389 762 SRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS- 840 (929)
Q Consensus 762 ~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg- 840 (929)
|+++|+.++..... ......-..-.++|++.+.+-.+..+|
T Consensus 264 -------------------------------iy~~dl~~~~~~~L-------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~ 305 (425)
T COG0823 264 -------------------------------IYLMDLDGKNLPRL-------TNGFGINTSPSWSPDGSKIVFTSDRGGR 305 (425)
T ss_pred -------------------------------EEEEcCCCCcceec-------ccCCccccCccCCCCCCEEEEEeCCCCC
Confidence 22333333221100 000111112334577776665554444
Q ss_pred -eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEECCCCcEEEEEe
Q 002389 841 -NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS-ASS--LQIWLRGTQQKVGRIS 899 (929)
Q Consensus 841 -tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~-DG~--I~IWdl~sg~~i~tl~ 899 (929)
.|.++|.+++.... +......-..-.|+|||++++..+. +|. |.+.|+.++..+..+.
T Consensus 306 p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 306 PQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred cceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc
Confidence 45566666665422 2222222226678999999987774 344 6666666665444333
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.31 Score=60.59 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 649 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
...|.+.+.-...++.|++.|.|-..|..+.-. +...=..-.++|++++|+.+|..++.|-.+|.|.+||+.+++....
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 445566666678899999999999998876421 1122223467999999999999999999999999999998775443
Q ss_pred EEeccCCCeEE-----eccCCCEEEEEecCCeEEEEe
Q 002389 729 EVIATKEPIRK-----LDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 729 ~~~~h~~~V~s-----~s~~g~~L~sgs~Dg~V~IWD 760 (929)
.. .+..|.+. ....+..++++...|. +|.
T Consensus 168 i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 168 IT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 33 34444432 2344456777777775 554
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.86 E-value=2 Score=49.83 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=98.4
Q ss_pred CCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEecc------CCCcEEEEEEc-----CCC---CEEEEEeCC
Q 002389 648 CSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE------HRKAVTSFSLF-----EPG---ESLLSGSAD 712 (929)
Q Consensus 648 H~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~g------H~~~Vtslafs-----pdg---~~LaSgs~D 712 (929)
..++|++++.| =|++|.|+.+|.+.|.|+++........+.. ....|+++.|. .|+ -.++.|...
T Consensus 85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 38999999998 5799999999999999998875432223333 33568889887 233 248889999
Q ss_pred CeEEEEEccC---CeEEEEEEe---ccCCCeEEeccCCCEEEEEecCCeEEEEeCCCcee---------eeccCCCeEEE
Q 002389 713 KTIGVWQMVQ---RKLELIEVI---ATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK---------DIYRSKGIKSM 777 (929)
Q Consensus 713 gtIrIWDl~t---g~~~~~~~~---~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~---------~l~~~~~V~sl 777 (929)
|.+.+|.+.. +........ .+.+++..+ ...|...... .+.....+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I----------------~~i~~~~G~~a~At~~~~~~l~~g~~i--- 225 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI----------------IPINADTGESALATISAMQGLSKGISI--- 225 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EE----------------EEEETTT--B-B-BHHHHHGGGGT------
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEE----------------EEEECCCCCcccCchhHhhccccCCCc---
Confidence 9999998752 221111100 111222211 1112110000 00001111
Q ss_pred EEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEE-----cCCceEEEEEecCCCeEEEEECCCCCe
Q 002389 778 SVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV-----YKDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 778 a~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~-----~~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
+ .++..+.+..++++...+.+... +.|+ .......+.+ ...+..+++.. .+|.|++|.+..-+.
T Consensus 226 ---~-g~vVvvSe~~irv~~~~~~k~~~-----K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 226 ---P-GYVVVVSESDIRVFKPPKSKGAH-----KSFD-DPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKE 294 (395)
T ss_dssp -----EEEEEE-SSEEEEE-TT---EEE-----EE-S-S-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--E
T ss_pred ---C-cEEEEEcccceEEEeCCCCcccc-----eeec-cccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchH
Confidence 1 24555667788888887654321 2221 1111111222 22344445444 688999999988776
Q ss_pred EEEecCCC----CCeEEEEEecCCCEEEEEe
Q 002389 853 ISIAPEKG----TTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 853 i~~l~~h~----~~V~slafSpdg~~LaSgS 879 (929)
+....-+. ..+....++++|..++-.+
T Consensus 295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred hhcccCCCccccccccccEECCCCCEEEEeC
Confidence 65544322 2455667788888776654
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.76 E-value=3.4 Score=50.45 Aligned_cols=196 Identities=11% Similarity=0.133 Sum_probs=106.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEEe------CCC--eEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeE-EEE
Q 002389 689 EHRKAVTSFSLFEPGESLLSGS------ADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRM-KVI 759 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs------~Dg--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V-~IW 759 (929)
+....+.+.+++|+|+.++... .|+ .+.+++.. +.. .....+....--+|+++|+.+++....+.+ ++.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3334678899999999866544 244 44444542 221 222222222233688888888877643221 111
Q ss_pred eCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 760 DSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 760 Dl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
+ ....+.+.+.++..+.... .....|..+.+++|+..++-.. +
T Consensus 425 ~--------------------------~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~--~ 467 (591)
T PRK13616 425 R--------------------------DPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMII--G 467 (591)
T ss_pred c--------------------------cCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEE--C
Confidence 1 1123445555665443221 1134688899999988766554 4
Q ss_pred CeEEE---EECCCCCeEEE-----e-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCcEEEEEeCC---CCeEE
Q 002389 840 SNIKE---WRRHRKPQISI-----A-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG-TQQKVGRISAG---SKITS 906 (929)
Q Consensus 840 gtI~I---WDl~~~~~i~~-----l-~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~-sg~~i~tl~~h---~~Vts 906 (929)
+.|.+ -....|. ... + .+-...+.++.|.+++..+ .+..++...+|.+. .|..-..+..+ .++.+
T Consensus 468 g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~ 545 (591)
T PRK13616 468 GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVA 545 (591)
T ss_pred CEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEE
Confidence 56666 3434443 111 2 2233346889999999855 55555655666532 23222222332 34777
Q ss_pred EEEcCCEEEEEECCCcEEE
Q 002389 907 LLTANDIVLCGTETGLIKG 925 (929)
Q Consensus 907 vs~dg~~LaSgs~DG~I~I 925 (929)
++-++..++.++.+|.+++
T Consensus 546 vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 546 VAASPSTVYVTDARAVLQL 564 (591)
T ss_pred EecCCceEEEEcCCceEEe
Confidence 7766666777777775543
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.67 E-value=0.052 Score=56.71 Aligned_cols=140 Identities=10% Similarity=0.103 Sum_probs=83.9
Q ss_pred EEEEEecCCeEEEEeCCCceeeeccCCCe---EEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEE
Q 002389 746 TIFASTQGHRMKVIDSSRTLKDIYRSKGI---KSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINS 822 (929)
Q Consensus 746 ~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V---~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~s 822 (929)
.+...+.+|.|.-++++...........+ ..+.-.+..+++|+.+|.|++|+...-.... ........++-.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~-----d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS-----DRVCSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHH-----Hhhhccccccee
Confidence 45556778888888876332222221112 2222226679999999999999886311110 001111223322
Q ss_pred -EEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCEEEEE--eCCCcEEEEECCC
Q 002389 823 -LVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYN--SSASSLQIWLRGT 891 (929)
Q Consensus 823 -l~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~~V~slafSpdg~~LaSg--S~DG~I~IWdl~s 891 (929)
+....+..+.. .+..+|.|+.|+..-++.+.....|+ .++.....+..+++++.+ |.|..++.|++..
T Consensus 107 ~Ip~~~~~~~~c-~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGC-VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeE-EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22223323333 33368999999998888777777777 566666677777777777 7788888887654
No 374
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.65 E-value=1.2 Score=52.05 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=52.2
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEE--EEccCCeEEEEEEeccCCCeEEeccCCC
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGV--WQMVQRKLELIEVIATKEPIRKLDTYGK 745 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrI--WDl~tg~~~~~~~~~h~~~V~s~s~~g~ 745 (929)
..+.++|+.++....+..+.++... -+|+|||++|+ +...||...| .|+.+++............-.+++|+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~---P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGA---PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCC---ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 4699999999877666666666543 47999999854 5666776554 5666655222111111111336889999
Q ss_pred EEEEEecC
Q 002389 746 TIFASTQG 753 (929)
Q Consensus 746 ~L~sgs~D 753 (929)
.++.++..
T Consensus 295 ~ivf~Sdr 302 (425)
T COG0823 295 KIVFTSDR 302 (425)
T ss_pred EEEEEeCC
Confidence 88877644
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=12 Score=43.28 Aligned_cols=206 Identities=13% Similarity=0.093 Sum_probs=130.3
Q ss_pred EEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEec---CCeEEEEeCCC--ceee
Q 002389 694 VTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ---GHRMKVIDSSR--TLKD 767 (929)
Q Consensus 694 Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~---Dg~V~IWDl~~--~~~~ 767 (929)
-..++.++.+.. .++...++.|.+.|..+.+.......+....-..++++++.++++.. ++++.+.|... ....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 456788888886 55556679999999877766555555554445578899988888766 57888888662 2233
Q ss_pred eccCCCeEEEEEe-CCE-EEE-EECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE--ecCCCeE
Q 002389 768 IYRSKGIKSMSVV-QGK-IYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS--SVEGSNI 842 (929)
Q Consensus 768 l~~~~~V~sla~s-dg~-lls-gs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~--S~dDgtI 842 (929)
......-..+++. +|. ++. -..++.+.++|..+..... ..+ ............+.+.+++.+.... ...++.+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc-ccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 2223223677776 665 544 4478899999976643321 110 0001123344556666766543322 2123588
Q ss_pred EEEECCCCCeEEEecCCCC-CeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCC
Q 002389 843 KEWRRHRKPQISIAPEKGT-TIQAMAVVEDFIYLNYNSS-ASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~h~~-~V~slafSpdg~~LaSgS~-DG~I~IWdl~sg~~i~tl~~h 901 (929)
...|..++........-.. ....+.++|+|.++..... .+.+.+-|..+......+..+
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 8888888876654211111 4667899999999887744 489999998888777766544
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.84 E-value=0.71 Score=57.36 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=76.3
Q ss_pred CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC
Q 002389 781 QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG 860 (929)
Q Consensus 781 dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~ 860 (929)
+.+.+.|-.+..+..||.+-...+.+....+.+ .......+++...+|..+++. .+|.||+||.-+....+.+++-+
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs--~~G~IRLyd~~g~~AKT~lp~lG 618 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDGYIAVGS--NKGDIRLYDRLGKRAKTALPGLG 618 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCceEEEEe--CCCcEEeecccchhhhhcCCCCC
Confidence 345778899999999999865433332211222 235567788888888776654 68899999976555566677888
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 861 TTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.+|.+|..+.||+||++.+ +..+.+++.
T Consensus 619 ~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999999998776 667777763
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=12 Score=40.73 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=131.5
Q ss_pred CCCEEEEEEe--CC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCe-EEEEEccC
Q 002389 649 SGAVTALIYY--KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES-LLSGSADKT-IGVWQMVQ 722 (929)
Q Consensus 649 ~~~Vtsl~fs--~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~-LaSgs~Dgt-IrIWDl~t 722 (929)
..+|..-+|. ++ ..++.+.+|.+. ..+. + ...-..|+|+|.-.. ++.+-.-|+ ..++|..+
T Consensus 34 ~qavfasaf~~~dgs~g~a~~~eaGk~v-~~~~---------l---paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 34 AQAVFASAFDARDGSFGAATLSEAGKIV-FATA---------L---PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred CcchheeeeeccCCceeEEEEccCCcee-eeee---------c---ccccCCeecCCCCcceEEEEecCCceEEEECCCC
Confidence 3455555665 33 466666666652 1111 1 112234677776655 566666665 45788877
Q ss_pred CeEEEEEEeccCCCeE---EeccCCCEEEEEecC-----CeEEEEeCCCceeeecc----CCCeEEEEEe-CCEEEEEEC
Q 002389 723 RKLELIEVIATKEPIR---KLDTYGKTIFASTQG-----HRMKVIDSSRTLKDIYR----SKGIKSMSVV-QGKIYIGCM 789 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~---s~s~~g~~L~sgs~D-----g~V~IWDl~~~~~~l~~----~~~V~sla~s-dg~llsgs~ 789 (929)
.+.............. .|+++|.+++..-.| |.|-+||.+......-. .-+...+.+. ||+.+++..
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 6643333222222222 488999999987443 68999998844433321 2234455565 787544332
Q ss_pred C-------------------CcEEEEEccCCccceecccccccc--cCCCCeEEEEEcCCceEEEEEecCC----CeEEE
Q 002389 790 D-------------------SSIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEG----SNIKE 844 (929)
Q Consensus 790 D-------------------g~I~iwDl~tg~~~~i~~~~~~~~--~~~~~I~sl~~~~d~i~~~s~S~dD----gtI~I 844 (929)
. .++.+.|..+|..... ..+. .+.-.+..+...+++.........+ ----+
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLv 256 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLV 256 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcce
Confidence 2 2334444444432211 0001 2233455566555555444332211 00000
Q ss_pred EECCCCCeEEEec-------CCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEE
Q 002389 845 WRRHRKPQISIAP-------EKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLC 916 (929)
Q Consensus 845 WDl~~~~~i~~l~-------~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~~LaS 916 (929)
=-...++.+..+. .-...|-+++.+.+..+++..| ..+..-+||..+|..+..-... ....++....-++.
T Consensus 257 g~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-daaGva~~~~gf~v 335 (366)
T COG3490 257 GHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-DAAGVAAAKGGFAV 335 (366)
T ss_pred eeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-ccccceeccCceEE
Confidence 0011122222221 1124677888886666665555 5566788999999887544322 12335555455555
Q ss_pred EECCCcEEEe
Q 002389 917 GTETGLIKGW 926 (929)
Q Consensus 917 gs~DG~I~IW 926 (929)
.+.+|.+..+
T Consensus 336 ssg~G~~~~~ 345 (366)
T COG3490 336 SSGQGRIIFY 345 (366)
T ss_pred ecCCceEEec
Confidence 5666666643
No 378
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.74 E-value=4.4 Score=48.92 Aligned_cols=193 Identities=10% Similarity=0.018 Sum_probs=106.4
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE----------EeccCCCEEEEEecCCeEEEEeCCC-ceeeecc-
Q 002389 703 GESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR----------KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR- 770 (929)
Q Consensus 703 g~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~----------s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~- 770 (929)
+..++.++.++.|.-.|..+|+............+. .....+..++.++.|+.+...|... ...-...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 456777777888888899998866544332111111 1223456788888899999888762 2211111
Q ss_pred --C---CCeE-EEEEeCCEEEEEEC------CCcEEEEEccCCccceec---cc-----------------cccccc---
Q 002389 771 --S---KGIK-SMSVVQGKIYIGCM------DSSIQELAVSNNVEREIK---AP-----------------FKSWRL--- 815 (929)
Q Consensus 771 --~---~~V~-sla~sdg~llsgs~------Dg~I~iwDl~tg~~~~i~---~~-----------------~~~~~~--- 815 (929)
. ..+. .-.+.++.++++.. +|.|.-+|..+|+..-.. ++ ...|.+
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 0 1121 22234778777653 688999999988753111 00 001111
Q ss_pred --CCCCe-EEEEEcC--CceEEEEEec---------CC----CeEEEEECCCCCeEEEecCCCCCeEE---------EEE
Q 002389 816 --QSKPI-NSLVVYK--DWLYSASSSV---------EG----SNIKEWRRHRKPQISIAPEKGTTIQA---------MAV 868 (929)
Q Consensus 816 --~~~~I-~sl~~~~--d~i~~~s~S~---------dD----gtI~IWDl~~~~~i~~l~~h~~~V~s---------laf 868 (929)
.+..+ ....+.+ +.+|..+..| .| .+|.-.|.++|+..-.+......+.. +.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 01111 1122222 2233333211 11 26777888888876544432221111 222
Q ss_pred ecCCC---EEEEEeCCCcEEEEECCCCcEE
Q 002389 869 VEDFI---YLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 869 Spdg~---~LaSgS~DG~I~IWdl~sg~~i 895 (929)
..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 24676 7889999999999999999986
No 379
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=1.1 Score=49.95 Aligned_cols=187 Identities=19% Similarity=0.152 Sum_probs=149.9
Q ss_pred hhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhh
Q 002389 260 PAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLAC 339 (929)
Q Consensus 260 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~ 339 (929)
+..|+.-|+.++...| |+.-+.+.||+.-++..+++.+.+=|..||.++-.|.|-.--|-..+-+.--+++++.
T Consensus 100 ke~ald~Le~lve~iD------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 100 KEDALDNLEELVEDID------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred HHHHHHHHHHHHHhhh------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 6788888888877665 8888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHH-HHHHhhhccccCCCCC
Q 002389 340 LLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLA-ANLLLQLDTLENTTGK 417 (929)
Q Consensus 340 l~~~~-~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~-a~lllqld~l~~~~~~ 417 (929)
.|-+. ...+|..|+.=++-|++-+---..+|++. + ---.|.-.||+-..+.+.-+ |..|++.=+..++...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~----~---G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL----N---GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc----C---CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 88766 67788999999999998887445555432 1 13445556666444555444 3444444444667777
Q ss_pred CcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccC
Q 002389 418 SVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTG 459 (929)
Q Consensus 418 s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg 459 (929)
.+..++-..-.++.+..+....+++.+-.+++.+-=.|+..+
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 799999999999999999888889999999999888888777
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=18 Score=41.67 Aligned_cols=210 Identities=10% Similarity=0.142 Sum_probs=128.9
Q ss_pred EEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCeEEE
Q 002389 654 ALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLEL 727 (929)
Q Consensus 654 sl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~---DgtIrIWDl~tg~~~~ 727 (929)
.++.+ ++ .+++...++.|.+.|..+.+. .....- ......++++|+++.++.+.. ++++.+.|..+++...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccce--eeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 44554 33 456666679999999776643 232211 125678999999988766654 6888888988887665
Q ss_pred EEEeccCCCeEEeccCCCEEEEEe-cCCeEEEEeCCCceee-------eccCCCeEEEEEe-CCE-EEEEEC---CCcEE
Q 002389 728 IEVIATKEPIRKLDTYGKTIFAST-QGHRMKVIDSSRTLKD-------IYRSKGIKSMSVV-QGK-IYIGCM---DSSIQ 794 (929)
Q Consensus 728 ~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~~~-------l~~~~~V~sla~s-dg~-llsgs~---Dg~I~ 794 (929)
....+....-..++++|..++... .++.+.+.|....... ......-..+.+. +|. ++.... ++.+.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 533333233446889999777776 7789999997743322 1122334455665 555 444332 35888
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC---CeEEEEEecC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT---TIQAMAVVED 871 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~---~V~slafSpd 871 (929)
..|..++.......+. ... ....+..+|++.+........+.+.+.|..+............ .+..+++.+.
T Consensus 235 ~id~~~~~v~~~~~~~----~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 235 KIDTATGNVTATDLPV----GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeCCCceEEEecccc----ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 8888876544331111 111 3445677788777665544567899999888776665443322 3555555543
No 381
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.33 E-value=0.023 Score=66.48 Aligned_cols=152 Identities=15% Similarity=0.238 Sum_probs=98.0
Q ss_pred CCCCCCEEEEEEe--C-CEEEEEE----CCCeEEEEECCCC--CeeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389 646 HKCSGAVTALIYY--K-GLLCSGF----SDGSIKMWDIKKQ--SAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTI 715 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~-~~LaSGs----~DGtIrIWD~~~~--~~~~i~~l~g-H~~~Vtslafspdg~~LaSgs~DgtI 715 (929)
.+|..+.++++|+ | +.||.|- .|..+.|||+.+. .+.....+.+ -.....+++|-.+.+.+.+|...+.+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 4788999999998 4 3777774 3678999999876 2211122222 34566789999888889999999999
Q ss_pred EEEEccCCeEEEEEEeccCCCeE--Eecc-CCCEEEEEecCCeEEEEeCC----Cceeeecc-----CCCeEEEEEe---
Q 002389 716 GVWQMVQRKLELIEVIATKEPIR--KLDT-YGKTIFASTQGHRMKVIDSS----RTLKDIYR-----SKGIKSMSVV--- 780 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~~~V~--s~s~-~g~~L~sgs~Dg~V~IWDl~----~~~~~l~~-----~~~V~sla~s--- 780 (929)
+++|++.....+... ....+. .+.| .++++++-. ||.|.+||.. +.+..+.. .+.+..++|.
T Consensus 179 ~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 999997432111111 111122 3455 566776655 9999999943 22222222 2347788874
Q ss_pred CCEEEEEE-CCCcEEEEEccC
Q 002389 781 QGKIYIGC-MDSSIQELAVSN 800 (929)
Q Consensus 781 dg~llsgs-~Dg~I~iwDl~t 800 (929)
.|.+++.. ..++|+.+|+..
T Consensus 256 tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhhccCcceEEEecccc
Confidence 56666544 457899999854
No 382
>PHA03098 kelch-like protein; Provisional
Probab=93.04 E-value=4.2 Score=49.00 Aligned_cols=186 Identities=5% Similarity=-0.019 Sum_probs=89.6
Q ss_pred CCCEEEEEeCCC------eEEEEEccCCeEEEEEEec-cCCCeEEeccCCCEEEEEecC-----CeEEEEeCCCceeeec
Q 002389 702 PGESLLSGSADK------TIGVWQMVQRKLELIEVIA-TKEPIRKLDTYGKTIFASTQG-----HRMKVIDSSRTLKDIY 769 (929)
Q Consensus 702 dg~~LaSgs~Dg------tIrIWDl~tg~~~~~~~~~-h~~~V~s~s~~g~~L~sgs~D-----g~V~IWDl~~~~~~l~ 769 (929)
++..++.||.++ .+..||..++++....... ..........++...+.|+.+ +.+..||.....-...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 445555665432 4677888776653221111 111112233455555666654 2566777663221111
Q ss_pred ----cCCCeEEEEEeCCEEEE-EECC------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC
Q 002389 770 ----RSKGIKSMSVVQGKIYI-GCMD------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE 838 (929)
Q Consensus 770 ----~~~~V~sla~sdg~lls-gs~D------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d 838 (929)
....-.+.+..++++++ |+.+ ..+..||..+++.....+... ...-.+.....+.++.+++...
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-----SHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-----cccCceEEEECCEEEEECCccC
Confidence 11112233344777554 5521 457888988765443321100 1111234445666666654321
Q ss_pred C------CeEEEEECCCCCeEEEec--CCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcE
Q 002389 839 G------SNIKEWRRHRKPQISIAP--EKGTTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQK 894 (929)
Q Consensus 839 D------gtI~IWDl~~~~~i~~l~--~h~~~V~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~~ 894 (929)
. ..+..||..+++-...-. ........+. -+++.++.||.+ +.|.+||..+.+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 1 248889987765332211 1111111222 267777777754 4688888776543
No 383
>PHA03098 kelch-like protein; Provisional
Probab=92.88 E-value=6 Score=47.65 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=72.4
Q ss_pred CCEEEEEECCC------eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCeEEE
Q 002389 659 KGLLCSGFSDG------SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRKLEL 727 (929)
Q Consensus 659 ~~~LaSGs~DG------tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-----gtIrIWDl~tg~~~~ 727 (929)
+..++.||.++ .+..||..+.+...+..+.........+. -++...+.||.+ ..+..||..+++...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 44666676543 57788888776533322221222222222 256666777765 357788888776543
Q ss_pred EEEeccCC-CeEEeccCCCEEEEEecC------CeEEEEeCCCceeee-c---cCCCeEEEEEeCCEEE-EEECC-----
Q 002389 728 IEVIATKE-PIRKLDTYGKTIFASTQG------HRMKVIDSSRTLKDI-Y---RSKGIKSMSVVQGKIY-IGCMD----- 790 (929)
Q Consensus 728 ~~~~~h~~-~V~s~s~~g~~L~sgs~D------g~V~IWDl~~~~~~l-~---~~~~V~sla~sdg~ll-sgs~D----- 790 (929)
........ .......++...+.|+.+ +.+..||.....-.. . ....-.++...+++++ .|+.+
T Consensus 373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC
Confidence 22111111 111222344555555521 357888876322111 1 1111223444577754 45432
Q ss_pred ---CcEEEEEccCCcccee
Q 002389 791 ---SSIQELAVSNNVEREI 806 (929)
Q Consensus 791 ---g~I~iwDl~tg~~~~i 806 (929)
..+..||..+++-..+
T Consensus 453 ~~~~~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTEL 471 (534)
T ss_pred cccceEEEecCCCCceeeC
Confidence 2378888887655443
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=1.2 Score=51.75 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=92.2
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCE--E-----EEEeCCCeEEEEEccCCeE-EEEEE--
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGES--L-----LSGSADKTIGVWQMVQRKL-ELIEV-- 730 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~--L-----aSgs~DgtIrIWDl~tg~~-~~~~~-- 730 (929)
.+.+|.....++--|++.++. +.+++-|.+ |+-+.+.|+++. + +.|-.|+.|.-||.+-... .....
T Consensus 348 il~~~~~~~~l~klDIE~GKI--VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKI--VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeeccccee--eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 455666667777888888854 666666666 777788887653 2 3456688899999874322 11111
Q ss_pred --eccCCCeEEec-cCCCEEEEEecCCeEEEEeCC-Cceeeecc--CCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 002389 731 --IATKEPIRKLD-TYGKTIFASTQGHRMKVIDSS-RTLKDIYR--SKGIKSMSVV-QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 731 --~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~~--~~~V~sla~s-dg~llsgs~Dg~I~iwDl~ 799 (929)
...+....|+. ....+|++|+.+|.|++||-- ...++..+ +..|+.+..+ +|+.+.|..+..+.+.++.
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 12233445554 345689999999999999964 23333332 5679999998 9998888888888888874
No 385
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.72 E-value=4 Score=52.59 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcc--hhhhhhhhhcCCCchHHHH-HHhh---cchhhHHHHHhcCCCchhh
Q 002389 156 ILEQLLTAISASKEETVIRASVSILTTIILAN--ESVIEDIKKKGLRLSDLAT-ALKR---NVPEAAILIYLIKPSPTEI 229 (929)
Q Consensus 156 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~--~~~~~~~~~~~~~~~~~~~-~lk~---~~~~~~vl~~l~~~~~~~~ 229 (929)
-++.|++.| .+.++.|-+++|..|..+...+ +..++-+.+.|+++.-.+. .|.. ..+.+..|+-+++..-. .
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~-~ 699 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDP-V 699 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCH-H
Confidence 346777776 6899999999999998876322 1223333333333333332 2322 12223334444433111 1
Q ss_pred hhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHH
Q 002389 230 KTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELIS 309 (929)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 309 (929)
.. ..+++.|..-+ +.. ...+++ .|..-|..-...-+.+|...+....|+..++..+.+-|.+
T Consensus 700 VR----~~A~~aL~~~~------------~~~-~~~l~~-~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 700 VR----AAALDVLRALR------------AGD-AALFAA-ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIA 761 (897)
T ss_pred HH----HHHHHHHHhhc------------cCC-HHHHHH-HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHH
Confidence 11 11222222100 000 011222 2221222111222444444444456777778888888888
Q ss_pred HHHHHHhhhhccCcchhHHHhhc--CccchhhhhhcCCchhHHHHHHHHHHHhccC-----------------chhhHHH
Q 002389 310 LATILVKCIQFDGQCRKYLSEFT--AVAPLACLLQSGEKRAIMIALEFFHEILRIP-----------------RSSAIDL 370 (929)
Q Consensus 310 ~~~~l~~c~~~d~~cr~~ia~~~--~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~-----------------r~~~~~~ 370 (929)
++.-|-. +...- ....++++++..+...|..|+.-|.++=+-. |..+.+-
T Consensus 762 aa~aL~~-----------~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 762 VAKGLAT-----------LGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHH-----------hccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 8887751 11111 1356777888888888888888886653211 1123333
Q ss_pred HHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHH
Q 002389 371 LQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILS 449 (929)
Q Consensus 371 l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~ 449 (929)
|..+ |+-..+-.|+-.|+...+.=|--+|.-|-++.. -++|+++|..+|+ .++..++..|++||-
T Consensus 831 L~~l---~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~~~a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 831 LAGA---AADVAVPALVEALTDPHLDVRKAAVLALTRWPG----------DPAARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred HHhc---cccchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CHHHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 3333 233345666666666666656566655545311 1467788887777 447778888888873
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=0.37 Score=59.93 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=63.3
Q ss_pred CCCeEEEEECCCCCe-EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEE---EEc--
Q 002389 838 EGSNIKEWRRHRKPQ-ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSL---LTA-- 910 (929)
Q Consensus 838 dDgtI~IWDl~~~~~-i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsv---s~d-- 910 (929)
+.|.+-..|..+.-. ...-..-+++|++++|+.||.+++.|-.+|.|.+||...++.++.+..|+ +++++ .+.
T Consensus 107 s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~ 186 (1206)
T KOG2079|consen 107 SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQ 186 (1206)
T ss_pred CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCC
Confidence 566777777655321 11222335689999999999999999999999999999999998888763 34443 333
Q ss_pred CCEEEEEECCCcEEEee
Q 002389 911 NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 911 g~~LaSgs~DG~I~IWd 927 (929)
+..+.++...|. +|+
T Consensus 187 nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 187 NSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CcEEEEccCCCc--eEE
Confidence 336788877775 564
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.51 E-value=18 Score=40.43 Aligned_cols=211 Identities=13% Similarity=0.105 Sum_probs=109.0
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-EEEEeccCCCeE-
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-LIEVIATKEPIR- 738 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~-~~~~~~h~~~V~- 738 (929)
++.+--..+.|.-|+..+++. ..+ .+.+.+.++.....+..|+++.. -+.+++.+++... .........+..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~---~~~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK---RVF-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce---EEE-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCC
Confidence 455666778888999887642 233 33444566655555666666543 3567777666542 211111111111
Q ss_pred ----EeccCCCEEEEEec-----------CCeEEEEeCCCceeeeccC--CCeEEEEEe-CCE-EEEEEC-CCcEEEEEc
Q 002389 739 ----KLDTYGKTIFASTQ-----------GHRMKVIDSSRTLKDIYRS--KGIKSMSVV-QGK-IYIGCM-DSSIQELAV 798 (929)
Q Consensus 739 ----s~s~~g~~L~sgs~-----------Dg~V~IWDl~~~~~~l~~~--~~V~sla~s-dg~-llsgs~-Dg~I~iwDl 798 (929)
.+.++|.+.++... -|.++-+|..+....+... ..-+.++|+ |++ ++...+ .+.|+-|++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 24566665544433 1234444533333333222 235678897 775 555444 477888877
Q ss_pred cC--CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe-cCCCEE
Q 002389 799 SN--NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV-EDFIYL 875 (929)
Q Consensus 799 ~t--g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS-pdg~~L 875 (929)
.. +..... .............-.++...++.+-++....++.|..|+.+ ++.+....-+...+++++|- |+.+.|
T Consensus 193 d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 193 DPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred CcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 53 111000 00001111123333444444444433333234589999999 77777777676778888885 555555
Q ss_pred EEEe
Q 002389 876 NYNS 879 (929)
Q Consensus 876 aSgS 879 (929)
...+
T Consensus 271 ~iTs 274 (307)
T COG3386 271 YITS 274 (307)
T ss_pred EEEe
Confidence 4433
No 388
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.44 E-value=0.78 Score=56.59 Aligned_cols=302 Identities=18% Similarity=0.193 Sum_probs=188.7
Q ss_pred ccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHH
Q 002389 275 DYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALE 354 (929)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~ 354 (929)
.-++|...-..+.-.+++..|+..++.++.|-.+.++..|-+.--.+ .|++.+++.--.++++++|.++.....-.|++
T Consensus 275 NLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLr 353 (708)
T PF05804_consen 275 NLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALR 353 (708)
T ss_pred HHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHH
Confidence 33455555556667899999999999999988888888887554333 37999999999999999999999888889999
Q ss_pred HHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhc
Q 002389 355 FFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVAS 434 (929)
Q Consensus 355 ~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~ 434 (929)
+|.-|=--+ ..-..+-+.|.+..+--|| + .+..+.++-.+|.||=.-++.+.+=.|. +++..|++.|-.
T Consensus 354 lL~NLSfd~-----~~R~~mV~~GlIPkLv~LL---~--d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~ 422 (708)
T PF05804_consen 354 LLFNLSFDP-----ELRSQMVSLGLIPKLVELL---K--DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLE 422 (708)
T ss_pred HHHHhCcCH-----HHHHHHHHCCCcHHHHHHh---C--CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHh
Confidence 998774433 3445677788888777666 2 3567778888999998877777777777 499999999888
Q ss_pred cCChhhhHHHHHHHHhcCccccccCchhhH----HHHHHHhCCCC--chhhhhhccCCcccchhhhhchhhhhHHHHHHH
Q 002389 435 EESSTMQLLSSFILSNIGGTFSWTGEPYTV----AWLVKKAGLNS--SWLQNMIRNFDWLDQSLQDRGVDSWSSKIAKSI 508 (929)
Q Consensus 435 ~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~----~~llk~ag~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l 508 (929)
..+..+|....-.+.||.=.=-.. +...+ .-|+++| +.. +.-..++||+..-++..+. ...+|-..++..+
T Consensus 423 ~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra-~~~~D~lLlKlIRNiS~h~~~~k~-~f~~~i~~L~~~v 499 (708)
T PF05804_consen 423 NSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRA-LKTRDPLLLKLIRNISQHDGPLKE-LFVDFIGDLAKIV 499 (708)
T ss_pred CCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHH-HhcccHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHh
Confidence 766666765555555543211100 11111 3445554 332 2233567887654544343 4567999998875
Q ss_pred HhcCh-h-HHHHHHhhhhcCCcccccc----ccchhHhhhcccCCC--Cccchhhh------------------HHhhHH
Q 002389 509 IEIGK-P-IYYALEKGLKSKTKSVCRD----SLTTIAWLSFEVSKS--PNSVRHSA------------------CQILLD 562 (929)
Q Consensus 509 ~~~g~-~-~l~aL~~~l~s~~~~l~~~----cL~~~~Wl~~~L~~l--pd~~~~~A------------------r~~Ll~ 562 (929)
-.... . ..|+|.--=.-..+++-.. -.--+.|+...|.+. ++++...+ ...+++
T Consensus 500 ~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~ 579 (708)
T PF05804_consen 500 SSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIP 579 (708)
T ss_pred hcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHH
Confidence 44222 2 3344432111111222111 122356887777653 22332222 112355
Q ss_pred hHHhhcCCCcchhhhhhhhh-cccccccCc
Q 002389 563 GVEQFLHPGLELEERLLACL-CIYNYASGK 591 (929)
Q Consensus 563 eL~~~L~~~~~L~ervLAsL-sL~n~~~~~ 591 (929)
.+.+.+.....-+|-++..+ ++|.+..++
T Consensus 580 ~Li~LL~~kqeDdE~VlQil~~f~~ll~h~ 609 (708)
T PF05804_consen 580 TLIELLNAKQEDDEIVLQILYVFYQLLFHE 609 (708)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHcCh
Confidence 55566655555566666543 566666554
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.12 E-value=28 Score=40.36 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=120.0
Q ss_pred EEEEe--CCEEE-EEECCC----eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-----------eE
Q 002389 654 ALIYY--KGLLC-SGFSDG----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK-----------TI 715 (929)
Q Consensus 654 sl~fs--~~~La-SGs~DG----tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dg-----------tI 715 (929)
...++ +.++| +-+..| ++++.|+.+++.. ...+... .-..+.|.++++.|+....|. .|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 45556 33554 334444 5999999998531 2222221 112399999998865554332 47
Q ss_pred EEEEccCCeEEEEEE-eccCCCe--E--EeccCCCEEEEEecC----CeEEEEeCCCc------eeeecc-CCCe-EEEE
Q 002389 716 GVWQMVQRKLELIEV-IATKEPI--R--KLDTYGKTIFASTQG----HRMKVIDSSRT------LKDIYR-SKGI-KSMS 778 (929)
Q Consensus 716 rIWDl~tg~~~~~~~-~~h~~~V--~--s~s~~g~~L~sgs~D----g~V~IWDl~~~------~~~l~~-~~~V-~sla 778 (929)
+.|++.++....... ......+ . ..+.++++++..+.. ..+.+.+.... ...+.. ...+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 888887764331122 2222222 2 357888887765433 35677777642 333333 2333 3344
Q ss_pred EeCCEEEEEE----CCCcEEEEEccCCccceecccccccccC--CCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCC
Q 002389 779 VVQGKIYIGC----MDSSIQELAVSNNVEREIKAPFKSWRLQ--SKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKP 851 (929)
Q Consensus 779 ~sdg~llsgs----~Dg~I~iwDl~tg~~~~i~~~~~~~~~~--~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~ 851 (929)
..++.++.-+ ..+.|...++......... ..+-.+ ...+..+....+...+.........|++++.. +..
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~---~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW---TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE---EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccce---eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4466655433 3456777777664421100 011111 23566666666665544433222478899998 544
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEE--EEe--CCCcEEEEECCCCcE
Q 002389 852 QISIAPEKGTTIQAMAVVEDFIYLN--YNS--SASSLQIWLRGTQQK 894 (929)
Q Consensus 852 ~i~~l~~h~~~V~slafSpdg~~La--SgS--~DG~I~IWdl~sg~~ 894 (929)
.........+.|..+...+++..+. ..| .-++++-||+.+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4433333344466665555555432 222 236788888888775
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.86 E-value=16 Score=46.03 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=105.8
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC----------eEEec---------------cCCCEEEEEecCCeEE
Q 002389 703 GESLLSGSADKTIGVWQMVQRKLELIEVIATKEP----------IRKLD---------------TYGKTIFASTQGHRMK 757 (929)
Q Consensus 703 g~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~----------V~s~s---------------~~g~~L~sgs~Dg~V~ 757 (929)
+..++.++.++.|.-.|..+|+............ +.-+. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5567777778888888888887655443322110 00011 2345888888999888
Q ss_pred EEeCC-Ccee-eeccCCCe----------------E-EEEEeCCEEEEEEC----------CCcEEEEEccCCccceecc
Q 002389 758 VIDSS-RTLK-DIYRSKGI----------------K-SMSVVQGKIYIGCM----------DSSIQELAVSNNVEREIKA 808 (929)
Q Consensus 758 IWDl~-~~~~-~l~~~~~V----------------~-sla~sdg~llsgs~----------Dg~I~iwDl~tg~~~~i~~ 808 (929)
-.|.. +... .+..+..+ + .-.+.++.+++|+. +|.|+-+|..+|+..=...
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 88866 2222 11111111 1 11223788887753 6889999999987532110
Q ss_pred -----------cccccccCCCCe-EEEEEcCC--ceEEEEEe-----------c----CCCeEEEEECCCCCeEEEecCC
Q 002389 809 -----------PFKSWRLQSKPI-NSLVVYKD--WLYSASSS-----------V----EGSNIKEWRRHRKPQISIAPEK 859 (929)
Q Consensus 809 -----------~~~~~~~~~~~I-~sl~~~~d--~i~~~s~S-----------~----dDgtI~IWDl~~~~~i~~l~~h 859 (929)
+-..|......+ ....+.+. .+|.-... + -.++|.-.|.++++..-.+...
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 001111010000 11112111 12221110 0 1246777888888876555431
Q ss_pred CCCeEE---------EEEec-CCC---EEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 860 GTTIQA---------MAVVE-DFI---YLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 860 ~~~V~s---------lafSp-dg~---~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
...+.. +.+.. +|+ .++.++.+|.+++.|..+|+.+...+
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 111111 22222 563 78999999999999999999986644
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.84 E-value=20 Score=38.16 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=105.6
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEEccCCeEEEEEE----e
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG---ESLLSGSADKTIGVWQMVQRKLELIEV----I 731 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg---~~LaSgs~DgtIrIWDl~tg~~~~~~~----~ 731 (929)
+.++..--..|.|.-||..+.+.. ..++.+. ++.++.+--.| .+.+.++..-.|.-||........... .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~-ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVY-RAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheE-EEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 335555555677777999876532 2333322 23344443222 234444544445567743322111111 0
Q ss_pred cc--CCCeE--EeccCCCEEEEEe----------cCCeEEEEeCCCceeeeccCCC-eEEEEEe-CCE--EEEEECCCcE
Q 002389 732 AT--KEPIR--KLDTYGKTIFAST----------QGHRMKVIDSSRTLKDIYRSKG-IKSMSVV-QGK--IYIGCMDSSI 793 (929)
Q Consensus 732 ~h--~~~V~--s~s~~g~~L~sgs----------~Dg~V~IWDl~~~~~~l~~~~~-V~sla~s-dg~--llsgs~Dg~I 793 (929)
.. +.... .++|+|++ +.|. ..|.++.|-.......+...-. -+.++|+ +.+ .++-+.+-.|
T Consensus 104 ~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred chHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 00 11111 36788887 3332 2356666666555444443222 2356665 333 4456667778
Q ss_pred EEEE--ccCCccce---ecccccccccCCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 794 QELA--VSNNVERE---IKAPFKSWRLQSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 794 ~iwD--l~tg~~~~---i~~~~~~~~~~~~~I~sl~~~-~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
.-|| ..+|.... +....+...........+.+. ....+.++++ +++|...|..+|+++..+.-.+..|++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--g~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--GGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--CcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 6676 55554311 100000000000111112222 3456677774 88999999999999999888899999999
Q ss_pred Eec
Q 002389 868 VVE 870 (929)
Q Consensus 868 fSp 870 (929)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 963
No 392
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=23 Score=38.90 Aligned_cols=151 Identities=10% Similarity=0.097 Sum_probs=97.1
Q ss_pred CCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 649 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
.+-+..+.++.++.+.+..+.-++|.|+.+........+-.-.+--.++. -.|++...+..|.-..+.|+.+.+....
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 55677888888998888899999999999865321111111113333444 4688888787666667888876542111
Q ss_pred E--EeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCcee-ee----ccCCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 002389 729 E--VIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK-DI----YRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 729 ~--~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~-~l----~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg 801 (929)
. ..........+...|++-+.+..|+.+.+-|+..... .+ .....+.++..++++.+..-.+.-+.+.|..+.
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ 243 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGP 243 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCC
Confidence 1 1111112234455688888899999999999884322 12 224468888888888776666667777777663
No 393
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.70 E-value=1 Score=41.70 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=88.1
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHH
Q 002389 228 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 307 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 307 (929)
|+.+.+.+|.+++.+..++.. .+..|+..|..+-.+. ......+...++++.++..+..++.+=+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~----------~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~v~ 66 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDEN----------VQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKSEDEEVV 66 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHH----------HHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhCCCHHHH
Confidence 566778999999999865421 2577888888775543 2334445567899999999998888888
Q ss_pred HHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHh
Q 002389 308 ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEIL 360 (929)
Q Consensus 308 ~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~ 360 (929)
..++..|-.-.+.....+..+.+.--..-++++|...+...+..|+.+|..|.
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888887776665566666666656788888999888888888888887653
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.67 E-value=0.42 Score=37.84 Aligned_cols=35 Identities=6% Similarity=0.172 Sum_probs=30.7
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 860 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 860 ~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
...|..++|+|....||.|+.||.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 346999999999999999999999999998 66554
No 395
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.42 E-value=33 Score=39.77 Aligned_cols=214 Identities=12% Similarity=0.057 Sum_probs=107.7
Q ss_pred cEEEEEEcCCCCEEEEE-eCCC----eEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCC-----------eE
Q 002389 693 AVTSFSLFEPGESLLSG-SADK----TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH-----------RM 756 (929)
Q Consensus 693 ~Vtslafspdg~~LaSg-s~Dg----tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg-----------~V 756 (929)
.+....++|||++++-+ +..| ++++.|+.+|+............-..|.++++.++....+. .|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34467899999996633 4444 59999999997654433333222256788888776665332 47
Q ss_pred EEEeCCCce----eeecc--CCC-eEEEEEe-CCE-EEE-EEC--C-CcEEEEEccCCc--cceecccccccccCCCCeE
Q 002389 757 KVIDSSRTL----KDIYR--SKG-IKSMSVV-QGK-IYI-GCM--D-SSIQELAVSNNV--EREIKAPFKSWRLQSKPIN 821 (929)
Q Consensus 757 ~IWDl~~~~----~~l~~--~~~-V~sla~s-dg~-lls-gs~--D-g~I~iwDl~tg~--~~~i~~~~~~~~~~~~~I~ 821 (929)
+.|.+.... ..+.. ... ...+..+ +++ ++. ... + ..+.+.+...+. .... ..+.........
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~---~~l~~~~~~~~~ 281 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP---KLLSPREDGVEY 281 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE---EEEEESSSS-EE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc---EEEeCCCCceEE
Confidence 888877332 22222 222 4455666 666 332 222 2 346777776641 1111 011122233334
Q ss_pred EEEEcCCceEEEEEe-cCCCeEEEEECCCCCe---EEEecCCCCCeEEEEEecCCCEE-EEEeCCC--cEEEEECCCCcE
Q 002389 822 SLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQ---ISIAPEKGTTIQAMAVVEDFIYL-NYNSSAS--SLQIWLRGTQQK 894 (929)
Q Consensus 822 sl~~~~d~i~~~s~S-~dDgtI~IWDl~~~~~---i~~l~~h~~~V~slafSpdg~~L-aSgS~DG--~I~IWdl~sg~~ 894 (929)
.+..+.+..+..+.. ...+.|.-.++..... ...+..|...+.--.+...+.+| +....++ .|++|++..+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 444444444444421 1235666677766542 33555565543333334444444 4444444 578889884555
Q ss_pred EEEEeCC--CCeEEEEE
Q 002389 895 VGRISAG--SKITSLLT 909 (929)
Q Consensus 895 i~tl~~h--~~Vtsvs~ 909 (929)
...+... +.|..+..
T Consensus 362 ~~~~~~p~~g~v~~~~~ 378 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSG 378 (414)
T ss_dssp EEEEESSSSSEEEEEES
T ss_pred EeeecCCcceEEeccCC
Confidence 5555543 33555553
No 396
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.37 E-value=2.6 Score=50.40 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhh-hhhcCCCchHHHHHHhhc---ch-hhHHHHHhc-CCCch
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIED-IKKKGLRLSDLATALKRN---VP-EAAILIYLI-KPSPT 227 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~-~~~~~~~~~~~~~~lk~~---~~-~~~vl~~l~-~~~~~ 227 (929)
|.++..+.+. .++.++-|-+.|+.-+..+...++...+. | +..+..+|+.. |. -|..+++-+ .|...
T Consensus 113 ~~l~~~v~~l-l~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~------~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 113 EPLIPDVIKL-LSDPSPYVRKKAALALLKIYRKDPDLVEDEL------IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHH-HHSSSHHHHHHHHHHHHHHHHHCHCCHHGGH------HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred hHHHHHHHHH-hcCCchHHHHHHHHHHHHHhccCHHHHHHHH------HHHHhhhccCCcchhHHHHHHHHHHHccCcch
Confidence 3344444444 55888899999988888888777776655 3 45566677652 44 667777777 22222
Q ss_pred hhhhccchhHHHHHHhcc-ccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHH
Q 002389 228 EIKTLELLPTLVEVICTS-KLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEE 306 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 306 (929)
.. +++|.+++.|++- +.. . | -.-+.+++.|-.=.... ...... ...+..+...+...+..-
T Consensus 186 ~~---~~~~~~~~~L~~~l~~~--~-------~-~~q~~il~~l~~~~~~~--~~~~~~---~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 186 YK---SLIPKLIRILCQLLSDP--D-------P-WLQIKILRLLRRYAPME--PEDADK---NRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HT---THHHHHHHHHHHHHTCC--S-------H-HHHHHHHHHHTTSTSSS--HHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hh---hhHHHHHHHhhhccccc--c-------h-HHHHHHHHHHHhcccCC--hhhhhH---HHHHHHHHHHhhccccHH
Confidence 12 7778887777642 111 0 1 12223333332111000 001100 233444444444333333
Q ss_pred HHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccC
Q 002389 307 LISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 363 (929)
Q Consensus 307 ~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~ 363 (929)
...++..+..+...+. .-..-..++..+|.+.+...|..|+.-|..|..-+
T Consensus 248 ~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 248 VYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 4444444442222221 22233567888888888889999999988888776
No 397
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=7.6 Score=49.43 Aligned_cols=274 Identities=19% Similarity=0.210 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCC-CchHHHHHHhhcch-------------hhHHHH
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGL-RLSDLATALKRNVP-------------EAAILI 219 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~lk~~~~-------------~~~vl~ 219 (929)
|..++-|++. .+|-+++.-+.++.||..+. +++.+.+. .+..+.++|.+++. -+++..
T Consensus 117 Pell~~L~q~-~~S~~~~~rE~al~il~s~~-------~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 117 PELLQFLFQS-TKSPNPSLRESALLILSSLP-------ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred HHHHHHHHHH-hcCCCcchhHHHHHHHHhhh-------hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 5555544444 46778888999999987653 23333333 34456666655422 234555
Q ss_pred Hh-cCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHH
Q 002389 220 YL-IKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDV 298 (929)
Q Consensus 220 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (929)
|+ .++.--.... ++||+++.|+..--..+++.. -+-++..+..|+...-.-. -.++ ..+|.+-+..
T Consensus 189 ~~~~~~~~~~~~~-~llP~~l~vl~~~i~~~d~~~------a~~~l~~l~El~e~~pk~l----~~~l--~~ii~~~l~I 255 (1075)
T KOG2171|consen 189 YLENNKSEVDKFR-DLLPSLLNVLQEVIQDGDDDA------AKSALEALIELLESEPKLL----RPHL--SQIIQFSLEI 255 (1075)
T ss_pred HhccchHHHHHHH-HHhHHHHHHhHhhhhccchHH------HHHHHHHHHHHHhhchHHH----HHHH--HHHHHHHHHH
Confidence 66 5566666666 899999999986554433210 0112223333333221100 1111 2346777888
Q ss_pred hhccChHH--HHHHHHHHHhhhhc-cCcchhHHHhhcCccchhhhhhcC----------------Cc---hhHHH---HH
Q 002389 299 ARHQNLEE--LISLATILVKCIQF-DGQCRKYLSEFTAVAPLACLLQSG----------------EK---RAIMI---AL 353 (929)
Q Consensus 299 ~~~~~~~e--~~~~~~~l~~c~~~-d~~cr~~ia~~~~~~~~~~l~~~~----------------~~---~~~~~---~~ 353 (929)
+++.++++ |..|.++|++|++. -+.||++=- .-..-|..+|+-- ++ ..... |+
T Consensus 256 a~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~--~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~l 333 (1075)
T KOG2171|consen 256 AKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL--LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQAL 333 (1075)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh--hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHH
Confidence 88888887 88888889999885 455665422 2112222222210 00 01111 22
Q ss_pred -----------------HHHHHHhccC----chhhHHHHHHhhccCchh--------HHHHHHHHhhcccchhhHHHHHH
Q 002389 354 -----------------EFFHEILRIP----RSSAIDLLQRIHKEGNIN--------ILHILKLSLQQLQSDYQLLAANL 404 (929)
Q Consensus 354 -----------------~~~~el~~l~----r~~~~~~l~~~~~~~~~~--------~mh~~l~~lq~~~~~~~~~~a~l 404 (929)
..+..++.-. |..+.--|..|-+ ||-. +|.+.+-+|+-.-|.=|--+-+.
T Consensus 334 DrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E-Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~na 412 (1075)
T KOG2171|consen 334 DRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE-GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNA 412 (1075)
T ss_pred HHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 2222233322 2223334444433 3333 37788899999988888888888
Q ss_pred HhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhc
Q 002389 405 LLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNI 451 (929)
Q Consensus 405 llqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l 451 (929)
+=|+..==-|.=-+-|+|-=..+|+..|+..+++++|.-||-||+++
T Consensus 413 igQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 413 IGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNF 459 (1075)
T ss_pred HHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 88886433344444555555569999999999999999999999975
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.91 E-value=0.68 Score=36.63 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 690 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 690 H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
....|.+++|+|..+.||.|+.||.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 443
No 399
>PHA02790 Kelch-like protein; Provisional
Probab=89.62 E-value=15 Score=43.84 Aligned_cols=181 Identities=8% Similarity=0.011 Sum_probs=83.4
Q ss_pred CCEEEEEeCC-----CeEEEEEccCCeEEEEEEecc-CCCeEEeccCCCEEEEEecC--CeEEEEeCCCc-eeeecc---
Q 002389 703 GESLLSGSAD-----KTIGVWQMVQRKLELIEVIAT-KEPIRKLDTYGKTIFASTQG--HRMKVIDSSRT-LKDIYR--- 770 (929)
Q Consensus 703 g~~LaSgs~D-----gtIrIWDl~tg~~~~~~~~~h-~~~V~s~s~~g~~L~sgs~D--g~V~IWDl~~~-~~~l~~--- 770 (929)
+..++.||.+ .++..||..++++........ .........++...+.|+.+ ..+..||.... .....+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 3334555543 246667777765432221111 11111223445555555543 35777886532 111111
Q ss_pred CCCeEEEEEeCCEEEE-EECC---CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 771 SKGIKSMSVVQGKIYI-GCMD---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 771 ~~~V~sla~sdg~lls-gs~D---g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
...-.+++..+|++++ |+.+ ..+..||..+++-....+. .. ...-.+.....+.+|.++ |.+..||
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~~----~r~~~~~~~~~~~IYv~G-----G~~e~yd 421 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-YY----PHYKSCALVFGRRLFLVG-----RNAEFYC 421 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-CC----ccccceEEEECCEEEEEC-----CceEEec
Confidence 1112234445888655 5544 3467788877554433211 00 111123344555666553 4567888
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 002389 847 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQ 893 (929)
Q Consensus 847 l~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~ 893 (929)
..++.-.....-.......-+..-+|+..+.||.+ .+|..||..+.+
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 87665332211111111111122367777777754 346666665543
No 400
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.50 E-value=45 Score=38.34 Aligned_cols=214 Identities=9% Similarity=0.042 Sum_probs=96.8
Q ss_pred EEcCCCCEEEEEe-CCC--eEEEEEccCCeEEEEEEeccCC-CeEEeccCCCEEEEEecCCeEEEEeCCCc-eeeecc-C
Q 002389 698 SLFEPGESLLSGS-ADK--TIGVWQMVQRKLELIEVIATKE-PIRKLDTYGKTIFASTQGHRMKVIDSSRT-LKDIYR-S 771 (929)
Q Consensus 698 afspdg~~LaSgs-~Dg--tIrIWDl~tg~~~~~~~~~h~~-~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~-~ 771 (929)
+|.+||+.|+-++ .|| .+..-|+.+++........... .-..+++.++.++....+..+.-.|+... ...+.. .
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5678998755444 455 5666688888744333222222 22356777888777766678888887732 222221 2
Q ss_pred C-CeEEEEE---eCCEEEEEEC-----------------------CCcEEEEEccCCccceecccccccccCCCCeEEEE
Q 002389 772 K-GIKSMSV---VQGKIYIGCM-----------------------DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV 824 (929)
Q Consensus 772 ~-~V~sla~---sdg~llsgs~-----------------------Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~ 824 (929)
. .+-...+ +++..++|.. ...|.-.|+.+|+...+. .....+..+.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-------~~~~wlgH~~ 194 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-------EDTDWLGHVQ 194 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-------EESS-EEEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-------ecCccccCcc
Confidence 2 2222233 2555555432 344555666666654442 1244566778
Q ss_pred EcCCceEEEEEecCC---C-eEEEEEC--CCCCeEEEecCCC--CCeEEEEEecCCCEEEEEe-----CCCcEEEEECCC
Q 002389 825 VYKDWLYSASSSVEG---S-NIKEWRR--HRKPQISIAPEKG--TTIQAMAVVEDFIYLNYNS-----SASSLQIWLRGT 891 (929)
Q Consensus 825 ~~~d~i~~~s~S~dD---g-tI~IWDl--~~~~~i~~l~~h~--~~V~slafSpdg~~LaSgS-----~DG~I~IWdl~s 891 (929)
++|..-..+.++.++ . .-+||-+ ++.. ...+..|. ..+..=-|.|||..|.--+ .+..|.-+|..+
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 888777667675433 1 1255554 3333 23333332 2444556889998775422 244566678888
Q ss_pred CcEEEEEeCCCCeEE--EEEcCCEEEEEECC
Q 002389 892 QQKVGRISAGSKITS--LLTANDIVLCGTET 920 (929)
Q Consensus 892 g~~i~tl~~h~~Vts--vs~dg~~LaSgs~D 920 (929)
++........ +... .+++|+.++-=|.|
T Consensus 274 ~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 274 GERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 7654322222 2222 23557766654444
No 401
>PHA02790 Kelch-like protein; Provisional
Probab=89.25 E-value=14 Score=44.04 Aligned_cols=144 Identities=6% Similarity=-0.046 Sum_probs=73.0
Q ss_pred CCEEEEEECCC-----eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEEccCCeEEEEEEe
Q 002389 659 KGLLCSGFSDG-----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD--KTIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 659 ~~~LaSGs~DG-----tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D--gtIrIWDl~tg~~~~~~~~ 731 (929)
+..++.||.++ ++..||..+++...+..+.........+. -+|...+.||.+ .++..||..+++.......
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 33566676543 57778888776543333322121122222 356666777754 3578888877654332211
Q ss_pred ccCC-CeEEeccCCCEEEEEecC---CeEEEEeCCCceeeecc----CCCeEEEEEeCCEEEEEECCCcEEEEEccCCcc
Q 002389 732 ATKE-PIRKLDTYGKTIFASTQG---HRMKVIDSSRTLKDIYR----SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 732 ~h~~-~V~s~s~~g~~L~sgs~D---g~V~IWDl~~~~~~l~~----~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~ 803 (929)
.... .......+|...+.|+.+ ..+..||.....-.... ...-.+++..+|++++.+ |.+..||..+++-
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W 427 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSNTW 427 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCCcE
Confidence 1111 111233455555555544 34677887643222211 111223444588876644 4577888877655
Q ss_pred cee
Q 002389 804 REI 806 (929)
Q Consensus 804 ~~i 806 (929)
..+
T Consensus 428 ~~~ 430 (480)
T PHA02790 428 TLI 430 (480)
T ss_pred eEc
Confidence 443
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=89.02 E-value=0.97 Score=47.53 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEE-EEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCe
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSF-SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 737 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtsl-afspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V 737 (929)
+..++.|+.||.|++|+...... ....+..-...|.++ .--.++.+..+++.||.|+-|++..++.... ...|..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~-~g~h~~-- 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY-VGQHNF-- 145 (238)
T ss_pred CceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee-eccccC--
Confidence 45799999999999998873211 011111122333333 2223455688999999999999987764332 222321
Q ss_pred EEeccCCCEEEEEecCCeEEEEeC
Q 002389 738 RKLDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 738 ~s~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
.++..+++.+.|+.+.+|++
T Consensus 146 ----~~~e~~ivv~sd~~i~~a~~ 165 (238)
T KOG2444|consen 146 ----ESGEELIVVGSDEFLKIADT 165 (238)
T ss_pred ----CCcceeEEecCCceEEeecc
Confidence 23344455555555555543
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.96 E-value=25 Score=43.05 Aligned_cols=182 Identities=8% Similarity=0.037 Sum_probs=88.2
Q ss_pred CCeEEEEEccCCeEEEEEEeccCCCeEEeccC-CCEEEEEecCCeEEEEeCCCceeeecc------CCC-eEEEEEeCCE
Q 002389 712 DKTIGVWQMVQRKLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSRTLKDIYR------SKG-IKSMSVVQGK 783 (929)
Q Consensus 712 DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~~~~~l~~------~~~-V~sla~sdg~ 783 (929)
--.|+|+++ +|+........|. .+..+.++ ...+++...+|++++|++-+......+ ... +.|..|++|-
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 345788887 4544333333343 45555543 457888899999999998865444321 122 3444555555
Q ss_pred EEEEECCCcEEE-EEccCCccceecc-cccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEecCCC
Q 002389 784 IYIGCMDSSIQE-LAVSNNVEREIKA-PFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPEKG 860 (929)
Q Consensus 784 llsgs~Dg~I~i-wDl~tg~~~~i~~-~~~~~~~~~~~I~sl~~~~d~i~~~s~S-~dDgtI~IWDl~~~~~i~~l~~h~ 860 (929)
.+ -..+|.+.. .+........... |... ....+-+.+.-+......+... +.+-.+.--+........ +....
T Consensus 141 av-lt~~g~v~~i~~~~~~~~~~~~diP~~~--~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-~~~~~ 216 (829)
T KOG2280|consen 141 AV-LTVSGQVILINGVEEPKLRKMPDIPYNE--LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-LSWPN 216 (829)
T ss_pred EE-EecCCcEEEEcCCCcchhhhCCCCCCcc--CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc-cCCCC
Confidence 33 333444333 3333211111110 0000 0001111111111111111110 000001111111111111 11123
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 861 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
..+..+..||++++|+--..+|.|.+-+.+..+....+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 557889999999999999999999999888877777766
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.75 E-value=55 Score=38.31 Aligned_cols=258 Identities=7% Similarity=0.031 Sum_probs=128.3
Q ss_pred CEEEEEECCCeEEEEECCCCCee---EEEEeccCCCcEEEEEEcC----CCCEEEEEeCCCeEEEEEccC--Ce------
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFE----PGESLLSGSADKTIGVWQMVQ--RK------ 724 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~---~i~~l~gH~~~Vtslafsp----dg~~LaSgs~DgtIrIWDl~t--g~------ 724 (929)
+.|+.||.+|.++||+....... .+.+ ..-..||..+..-. .....+..=.-+.+.||.+.. |.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 38999999999999999765432 1222 23457888887532 122222234467777887632 11
Q ss_pred EEEEEEeccCCCeEE-------ec-cC-CCEEEEEecCCeEEEEeCCCceeee-ccCC-CeEEEEEe--CCEEEEEECCC
Q 002389 725 LELIEVIATKEPIRK-------LD-TY-GKTIFASTQGHRMKVIDSSRTLKDI-YRSK-GIKSMSVV--QGKIYIGCMDS 791 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s-------~s-~~-g~~L~sgs~Dg~V~IWDl~~~~~~l-~~~~-~V~sla~s--dg~llsgs~Dg 791 (929)
........|.-+-.+ |- .. .+.+++-+-||.+.+|+-+...-.. ..+- -.-.+.+. .+.+++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 122222233322222 11 22 4578888999999999988544222 2211 12234443 55678888888
Q ss_pred cEEEEEccC---Cccc------------eecccccccccC-CCCeEEEEEcC---CceEEEEEecCCCeEEEEECCCCCe
Q 002389 792 SIQELAVSN---NVER------------EIKAPFKSWRLQ-SKPINSLVVYK---DWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 792 ~I~iwDl~t---g~~~------------~i~~~~~~~~~~-~~~I~sl~~~~---d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
.+.-|.... .... .-+.....|... +..+..+.... .....+..+ ..++.+.+.+ |.+
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~~-G~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKDN-GSL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceEEEEcCC-CeE
Confidence 888776532 1000 000001112111 22333333221 222222222 2455555543 332
Q ss_pred EEEecCCCCCeEE-EEEe----cCC---CEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEE---Ec--CCEEEEEE
Q 002389 853 ISIAPEKGTTIQA-MAVV----EDF---IYLNYNSSASSLQIWLRGTQQKVGRISA-GSKITSLL---TA--NDIVLCGT 918 (929)
Q Consensus 853 i~~l~~h~~~V~s-lafS----pdg---~~LaSgS~DG~I~IWdl~sg~~i~tl~~-h~~Vtsvs---~d--g~~LaSgs 918 (929)
....+ ......+ ..|. .++ ..++.++.++++.||.-.+ .+..-+. +.+| ++. +. ...|++-+
T Consensus 274 ~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEEEc
Confidence 22221 1221112 1121 122 2477888899999996433 3333332 3343 333 22 45888899
Q ss_pred CCCcEEE
Q 002389 919 ETGLIKG 925 (929)
Q Consensus 919 ~DG~I~I 925 (929)
.+|.+.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 9998876
No 405
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.68 E-value=11 Score=45.13 Aligned_cols=207 Identities=16% Similarity=0.169 Sum_probs=123.3
Q ss_pred hhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHH
Q 002389 230 KTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELIS 309 (929)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 309 (929)
...+++|.++..+...+.. -.++|.-+|..|..- ......++.+.++..|...+...+..-|.+
T Consensus 116 ~~~~l~~~i~~~L~~~d~~----------Va~~A~~~L~~l~~~------~~~~~~l~~~~~~~~L~~l~~~~~~~vR~R 179 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLS----------VAKAAIKALKKLASH------PEGLEQLFDSNLLSKLKSLMSQSSDIVRCR 179 (503)
T ss_pred cCccHHHHHHHHHcCCcHH----------HHHHHHHHHHHHhCC------chhHHHHhCcchHHHHHHHHhccCHHHHHH
Confidence 3447888888888764432 135666677777542 235556777777888887777768888999
Q ss_pred HHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHH
Q 002389 310 LATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLS 389 (929)
Q Consensus 310 ~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~ 389 (929)
+-+++...........+++.+.==...++..|.+.+.-.+.+|+++|.||..-+= .. +-|-+.|.+..+.-++..
T Consensus 180 v~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~--g~---~yL~~~gi~~~L~~~l~~ 254 (503)
T PF10508_consen 180 VYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH--GL---QYLEQQGIFDKLSNLLQD 254 (503)
T ss_pred HHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh--HH---HHHHhCCHHHHHHHHHhc
Confidence 9999998887777777777775445666666777777889999999999998221 22 222334544444444433
Q ss_pred hhcccchhhHHHHHHHhhhccc--cCCCCCCcchHHHHHHHHHHHh---ccCChhhhHHHHHHHHhcCccccccCchhh
Q 002389 390 LQQLQSDYQLLAANLLLQLDTL--ENTTGKSVFTEEAMQVILKAVA---SEESSTMQLLSSFILSNIGGTFSWTGEPYT 463 (929)
Q Consensus 390 lq~~~~~~~~~~a~lllqld~l--~~~~~~s~yreea~~~~~~~l~---~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~ 463 (929)
-...|.--..++-+.+.-+.-+ .+|.+. -+..-++++.|- .+.++..+..|-+||-++| .+..|+-+-
T Consensus 255 ~~~dp~~~~~~l~g~~~f~g~la~~~~~~v----~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig--st~~G~~~L 327 (503)
T PF10508_consen 255 SEEDPRLSSLLLPGRMKFFGNLARVSPQEV----LELYPAFLERLFSMLESQDPTIREVAFDTLGQIG--STVEGKQLL 327 (503)
T ss_pred cccCCcccchhhhhHHHHHHHHHhcChHHH----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh--CCHHHHHHH
Confidence 3222201111222222222211 123222 112233333333 3357777777788998887 444565443
No 406
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.17 E-value=19 Score=42.78 Aligned_cols=263 Identities=14% Similarity=0.104 Sum_probs=129.0
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~g-H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
..+|..+.++ .+.+..|+.||-- .||..+++. ++.-.. ...+|..+.-+-.|+ |..|+.+| +.+.+....+..
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dGL~-~fd~~~gka--lql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDGLS-YFDAGRGKA--LQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccCcEEEecCCcce-EEccccceE--EEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccc
Confidence 5678888888 7899999999854 566666542 222222 225666665554554 67777666 566666543221
Q ss_pred EEEEeccCCCeEEeccCC-CEEEEEecCCeEEEEeCCCceeeecc-----CCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 002389 727 LIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSRTLKDIYR-----SKGIKSMSVV-QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g-~~L~sgs~Dg~V~IWDl~~~~~~l~~-----~~~V~sla~s-dg~llsgs~Dg~I~iwDl~ 799 (929)
.....-....|..+..|+ ..+..|+..|-.+.--.++.+..... -..|.++... +|.+.+++.++.+++-+..
T Consensus 239 n~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~ 318 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD 318 (671)
T ss_pred ccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch
Confidence 111111222344443333 35666766664433222332222211 2235555555 8889999988877655442
Q ss_pred CCccceecccccccccCCCCeEEEEEcC---CceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEecCCCEE
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYK---DWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~---d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h~~~V~slafSpdg~~L 875 (929)
-.....+ ....+..+...+..+ ++.....++ -|...+-+-.++..+.... .-...|+..++..+|+.
T Consensus 319 w~~ma~i------n~~dG~v~~~~~~a~~ll~~~v~~~ns--~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~l- 389 (671)
T COG3292 319 WKRMAVI------NDSDGGVSQYEAVAPALLSWGVRQLNS--IGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRL- 389 (671)
T ss_pred hhheeee------ecCCCchhhhhccCchhcccceeeccc--cceEEEecCCCCcEEEEeeeccccccchhhhccCCcE-
Confidence 1100001 011111111122222 111111111 1233344444454443322 12245666677665543
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEEeCC--CCeEEEEEc-CCEEEEEECCCcEEE
Q 002389 876 NYNSSASSLQIWLRGT-QQKVGRISAG--SKITSLLTA-NDIVLCGTETGLIKG 925 (929)
Q Consensus 876 aSgS~DG~I~IWdl~s-g~~i~tl~~h--~~Vtsvs~d-g~~LaSgs~DG~I~I 925 (929)
-.|+..+-+--|+.++ +.......+- ++|..+-.+ .+.|..|+.+|.++.
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR 443 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEec
Confidence 4444443455666655 3333333322 457777766 224888999887653
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.12 E-value=60 Score=37.96 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=53.0
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-----eEEEEEcC-------------C----E
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-----ITSLLTAN-------------D----I 913 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-----Vtsvs~dg-------------~----~ 913 (929)
+......+.+++.+|++++.|+...=|.|.++|+.++..++.+++-.. |....... + .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 334445688999999999999987789999999999999888886522 22111111 1 4
Q ss_pred EEEEECCCcEEEeec
Q 002389 914 VLCGTETGLIKGWIP 928 (929)
Q Consensus 914 LaSgs~DG~I~IWdi 928 (929)
++-+-.-|.|.||.+
T Consensus 383 vIyaprRg~lEvW~~ 397 (415)
T PF14655_consen 383 VIYAPRRGILEVWSM 397 (415)
T ss_pred EEEeccCCeEEEEec
Confidence 456777899999986
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.02 E-value=10 Score=46.27 Aligned_cols=105 Identities=8% Similarity=0.016 Sum_probs=67.5
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEECC-------
Q 002389 821 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVV--EDFIYLNYNSSASSLQIWLRG------- 890 (929)
Q Consensus 821 ~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h~~~V~slafS--pdg~~LaSgS~DG~I~IWdl~------- 890 (929)
.-+..+.-+...+. ..++.++.|||.+.+....... ...+.|.++.|. |||+.+.+.|..+.|.+|...
T Consensus 33 ~li~gss~~k~a~V-~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 33 SLISGSSIKKIAVV-DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred ceEeecccCcEEEE-ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 33444443444333 3367799999998887543322 456789999995 799999999999999998531
Q ss_pred --CCcEEEEEe--CC--CCeEEEEEcCC-EEEEEECCCcEEEee
Q 002389 891 --TQQKVGRIS--AG--SKITSLLTAND-IVLCGTETGLIKGWI 927 (929)
Q Consensus 891 --sg~~i~tl~--~h--~~Vtsvs~dg~-~LaSgs~DG~I~IWd 927 (929)
+..++..+. .+ ++|.+..|-++ .++.|+. +.+.|++
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~d 154 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFD 154 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEEC
Confidence 233455443 22 45888888633 5555554 4577765
No 409
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.70 E-value=23 Score=37.10 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=91.8
Q ss_pred CCCEEEEEeCC--CeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEe-cCCeEEEEeCC--CceeeeccCCCe
Q 002389 702 PGESLLSGSAD--KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSS--RTLKDIYRSKGI 774 (929)
Q Consensus 702 dg~~LaSgs~D--gtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs-~Dg~V~IWDl~--~~~~~l~~~~~V 774 (929)
+|..+.|.+.- ..|++||+.+|+......... ..+. .+..-+++++..+ .+|.-..||.+ +++..+.....-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 45556666654 369999999998665544431 2222 2445566666655 45666778876 344444444445
Q ss_pred EEEEEeCCEEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCe---EEEEEcCCceEEEEEecCCCeEEEEECCCC
Q 002389 775 KSMSVVQGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPI---NSLVVYKDWLYSASSSVEGSNIKEWRRHRK 850 (929)
Q Consensus 775 ~sla~sdg~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I---~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~ 850 (929)
+.++..+..++.+....+++.-|..+-.. ..+. + ..++.|| +.+.+-.+.+|.-.|- ...|...|.++|
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~----V-T~~g~pv~~LNELE~VdG~lyANVw~--t~~I~rI~p~sG 206 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQ----V-TDDGVPVSKLNELEWVDGELYANVWQ--TTRIARIDPDSG 206 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEE----E-EECCeecccccceeeeccEEEEeeee--ecceEEEcCCCC
Confidence 55555555566666666666666654221 1110 0 1122333 3344445555554443 224444455555
Q ss_pred CeEEEe------------cCCCCCeEEEEEecCC-CEEEEE
Q 002389 851 PQISIA------------PEKGTTIQAMAVVEDF-IYLNYN 878 (929)
Q Consensus 851 ~~i~~l------------~~h~~~V~slafSpdg-~~LaSg 878 (929)
+++..+ ..|..-.+.|++.|++ +++++|
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 543322 2345567889999977 666666
No 410
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=86.06 E-value=5.8 Score=36.53 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=64.0
Q ss_pred hchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccC
Q 002389 286 INSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP 363 (929)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~ 363 (929)
+...|++..|++.+..++.+-|..++..|-.....+-.|+.++.+.--...++++|...+...+..|+..|..|..-+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 345778899999999888888888888877666655677777777677888999999999999999999999998655
No 411
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.57 E-value=58 Score=34.41 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=44.0
Q ss_pred EEEEEeC-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 002389 653 TALIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS 710 (929)
Q Consensus 653 tsl~fs~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs 710 (929)
..++-.+ +.|+.+...+.|.+|++.+..+.+..++.. -+.|..+.++..|++|+|-=
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 3444444 666666778889999999777777788754 38899999999999999853
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.24 E-value=73 Score=35.26 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=95.0
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCC--CeEEeccCCCEEEEEecCCeEEEEeCCCc
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE--PIRKLDTYGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~--~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
+.|-...|.++.|+|+.+.|++..+...-.||=..+|+.........-. .-..+..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999998888888778866678765443332111 11123345555555556677777665521
Q ss_pred ------------eeeecc-CCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccc-eec---ccccccccCCCCeEEEEE
Q 002389 765 ------------LKDIYR-SKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVER-EIK---APFKSWRLQSKPINSLVV 825 (929)
Q Consensus 765 ------------~~~l~~-~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~-~i~---~~~~~~~~~~~~I~sl~~ 825 (929)
+....+ +.+.-.++|. +..++..-.-..+.+|.+..+... ... .+...-...-..+..+.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 111112 5567889997 556888888888888877643311 100 000000001223455666
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCC
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKP 851 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~ 851 (929)
++........|.+++.+.-.|.....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCe
Confidence 65444444455566677767766553
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.15 E-value=22 Score=43.45 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=68.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEe----ccCCCEEEEEecCCeEEEEeCCC-----
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKL----DTYGKTIFASTQGHRMKVIDSSR----- 763 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~----s~~g~~L~sgs~Dg~V~IWDl~~----- 763 (929)
.++-+.-+.-++.-+.-+...++.|||.+.+..+........++|..+ .++++.+++.+..+.|.+|.-.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344444444455433444456799999999987766666667788754 48899999999999999986421
Q ss_pred ------ceeee--c--cCCCeEEEEEe-CCEEEEEECCCcEEEEEcc
Q 002389 764 ------TLKDI--Y--RSKGIKSMSVV-QGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 764 ------~~~~l--~--~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~ 799 (929)
.++.+ . ..+.|.+..|- +|.+++|+ ++.+.++|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 11111 1 13457777776 77776665 4556666643
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=82.86 E-value=20 Score=39.04 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=68.2
Q ss_pred CeEEEEE-cCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 002389 819 PINSLVV-YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 896 (929)
Q Consensus 819 ~I~sl~~-~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~ 896 (929)
....+.+ +.+..+-.++-.....|+.+|+.+++......-.. -.--.++...|.-+..| =.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-Wk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-WKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-ecCCeEEEEccccceEEE
Confidence 3445666 34444443333233589999999998765443222 22234444444333333 368999999999999999
Q ss_pred EEeCCCCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 897 RISAGSKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 897 tl~~h~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
++.-.+.=+.++.+++.|+......+++++||
T Consensus 125 ~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 125 TFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEE-SSS--EEEECSSCEEEE-SSSEEEEE-T
T ss_pred EEecCCcceEEEcCCCEEEEECCccceEEECC
Confidence 99876667788899888888777888999886
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.33 E-value=86 Score=34.70 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=95.0
Q ss_pred CCEEEEEEeCCEEEEEECCCeEEEEECCCCCee-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-EE
Q 002389 650 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-EL 727 (929)
Q Consensus 650 ~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~-~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~-~~ 727 (929)
+--.++..++++...+..|.-.-+.|+.+.+.. +...+......-..++.| |++-+.+..|+-+.+-|+.+... ..
T Consensus 129 gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 129 GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred ceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 556777778998888886666778898875532 333444444444566654 56666677888899999976542 22
Q ss_pred EEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCcee--ee--ccCCC---eEEEEEeCCEEEEEECCCcEEEEEccC
Q 002389 728 IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK--DI--YRSKG---IKSMSVVQGKIYIGCMDSSIQELAVSN 800 (929)
Q Consensus 728 ~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~--~l--~~~~~---V~sla~sdg~llsgs~Dg~I~iwDl~t 800 (929)
.........+++..+.+++.+..-.+..+.+-|.++... .+ ..... +..+..++...+....+..+.+.|+.+
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 222333446777777888877777777788888774331 11 11222 333455666677777777777778766
No 416
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=81.87 E-value=59 Score=38.80 Aligned_cols=215 Identities=13% Similarity=0.198 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHh
Q 002389 103 KSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTT 182 (929)
Q Consensus 103 ~~~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~ 182 (929)
+.++...+-+.|.++..+.+- .-=+.|+..+.++++. +|. +.++.+++.+...| .+.++.|+.+++.+|.+
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~---~p~----~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSP-YVRKKAALALLKIYRK---DPD----LVEDELIPKLKQLL-SDKDPSVVSAALSLLSE 178 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHHH---CHC----CHHGGHHHHHHHHT-THSSHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhcCCch-HHHHHHHHHHHHHhcc---CHH----HHHHHHHHHHhhhc-cCCcchhHHHHHHHHHH
Confidence 678888888888888776654 3334567777788764 233 22333566655555 88899999999999999
Q ss_pred hhhcchhhhhhhhhcCCCchHHHHHHhh--cc--h-hhHHHHHhc---CCCchhhhh-ccchhHHHHHHhccccccCccc
Q 002389 183 IILANESVIEDIKKKGLRLSDLATALKR--NV--P-EAAILIYLI---KPSPTEIKT-LELLPTLVEVICTSKLYKGKLE 253 (929)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~lk~--~~--~-~~~vl~~l~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 253 (929)
+ ..++.... .=+..+...|.+ +. | --..+++++ -|...+... .++++.+...+.+.+..
T Consensus 179 i-~~~~~~~~------~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~----- 246 (526)
T PF01602_consen 179 I-KCNDDSYK------SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPS----- 246 (526)
T ss_dssp H-HCTHHHHT------THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred H-ccCcchhh------hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccH-----
Confidence 8 22222211 111122222221 11 1 111222222 233333331 35677777777632211
Q ss_pred ccccCchhhHHH-HHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhc
Q 002389 254 SVRLTPPAASLM-IIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFT 332 (929)
Q Consensus 254 ~~~~~p~~a~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~ 332 (929)
-++ .+.-++ .... +.. .--.++..|.+-+...+.+-|..+...|..-.+.. ..++.
T Consensus 247 ---------V~~e~~~~i~-~l~~--~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~--- 303 (526)
T PF01602_consen 247 ---------VVYEAIRLII-KLSP--SPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF--- 303 (526)
T ss_dssp ---------HHHHHHHHHH-HHSS--SHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG---
T ss_pred ---------HHHHHHHHHH-Hhhc--chH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh---
Confidence 111 111111 1110 111 11223444444555556666666666555444443 23333
Q ss_pred Cccchhhhhh-cCCchhHHHHHHHHHHHhc
Q 002389 333 AVAPLACLLQ-SGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 333 ~~~~~~~l~~-~~~~~~~~~~~~~~~el~~ 361 (929)
+....+..+. ..+..-|..|+++|..|..
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 4444555555 6677778888888887774
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.49 E-value=17 Score=38.68 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=54.1
Q ss_pred CEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEE----E-ec-------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 651 AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVW----D-VK-------EHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 651 ~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~----~-l~-------gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
+|..+...++++++-..+|.+++||+.+++..... . +. .....|..+.++.+|.-+++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 56667777889999999999999999987652111 0 11 3556788888988888777766 5778888
Q ss_pred EccCCeE
Q 002389 719 QMVQRKL 725 (929)
Q Consensus 719 Dl~tg~~ 725 (929)
+.+-+..
T Consensus 93 ~~~L~~W 99 (219)
T PF07569_consen 93 SPDLGCW 99 (219)
T ss_pred cccccee
Confidence 8765543
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.06 E-value=90 Score=33.47 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=40.8
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEcCC
Q 002389 865 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTAND 912 (929)
Q Consensus 865 slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~dg~ 912 (929)
.++...+|...++.-..|+|...|..+|+.+.++.-..+ |+|.+|-|+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 355566888888888899999999999999999998754 999999866
No 419
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=79.73 E-value=18 Score=42.29 Aligned_cols=244 Identities=16% Similarity=0.192 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhh---cc--h-hhHHHHHhcC--
Q 002389 152 LQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKR---NV--P-EAAILIYLIK-- 223 (929)
Q Consensus 152 ~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~---~~--~-~~~vl~~l~~-- 223 (929)
..+.+.+-+.+.+.++.+.+.+..+|..|.++...++ .|+.+.+.+ .+.++..+|++ ++ . ++...+.|+.
T Consensus 140 ~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~ 217 (429)
T cd00256 140 DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN 217 (429)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhcc
Confidence 3344556667777776678888888988888766554 556665666 78999999977 32 2 7777777773
Q ss_pred -CCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhcc-ccccchhhhhhhchhhhHhHHHHHhhc
Q 002389 224 -PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAF-DYATNNMHLAAINSPRVLCGLLDVARH 301 (929)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 301 (929)
+....+...+++|.+++|++.+... +- ---+++++-.|++.. +...+
T Consensus 218 ~~~~~~~~~~~~i~~l~~i~k~s~KE--Kv-------vRv~l~~l~Nll~~~~~~~~~---------------------- 266 (429)
T cd00256 218 PHAAEVLKRLSLIQDLSDILKESTKE--KV-------IRIVLAIFRNLISKRVDREVK---------------------- 266 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHhhhhH--HH-------HHHHHHHHHHHhhcccccchh----------------------
Confidence 2334556678999999999875532 11 134566667776632 21111
Q ss_pred cChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcC--CchhHHHHHHHHHHHhccCc---hhhHHHHHHhhc
Q 002389 302 QNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSG--EKRAIMIALEFFHEILRIPR---SSAIDLLQRIHK 376 (929)
Q Consensus 302 ~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~--~~~~~~~~~~~~~el~~l~r---~~~~~~l~~~~~ 376 (929)
...+..|+-| ++-++++.|... .|.+-...+++|+|.|.-+- ++..+-..+++.
T Consensus 267 ------~~~~~~mv~~---------------~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s 325 (429)
T cd00256 267 ------KTAALQMVQC---------------KVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS 325 (429)
T ss_pred ------hhHHHHHHHc---------------ChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 1111222221 333444444433 45555566666666665543 223333333333
Q ss_pred c-----------------------CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccC--CCCCCcchHHHHHHHHHH
Q 002389 377 E-----------------------GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN--TTGKSVFTEEAMQVILKA 431 (929)
Q Consensus 377 ~-----------------------~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~--~~~~s~yreea~~~~~~~ 431 (929)
| ..+...-.|.-.|+.+.-.. ..|+-.-=+=-++. |.+..+-..--.+..+..
T Consensus 326 g~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~--~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~ 403 (429)
T cd00256 326 GRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI--ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR 403 (429)
T ss_pred CCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc--eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH
Confidence 2 22555666777775543222 22333322212222 667666666667888888
Q ss_pred HhccCChhhhHHHHHHHHhc
Q 002389 432 VASEESSTMQLLSSFILSNI 451 (929)
Q Consensus 432 l~~~~~~~~q~~~~~~l~~l 451 (929)
|-.++++.++-+|-.|+--|
T Consensus 404 Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 404 LLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HhcCCCHHHHHHHHHHHHHH
Confidence 88888999999766665433
No 420
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=79.73 E-value=1.1e+02 Score=34.18 Aligned_cols=229 Identities=14% Similarity=0.050 Sum_probs=113.2
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEccCCeE--------------
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQRKL-------------- 725 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl~tg~~-------------- 725 (929)
+|+.|..+|...+. ..+......+. .+..+|+++...+..+.|++-+ ....++++++..-..
T Consensus 15 ~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~ 91 (302)
T smart00036 15 WLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK 91 (302)
T ss_pred EEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence 79999999976555 54421122332 3567899999998888766554 334499999843111
Q ss_pred EEEEEeccCCCeEE--eccCC-CEEEEEecCCeEEEEeCCCceeeec-----------cCCCeEEEEEe----CCEEEEE
Q 002389 726 ELIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSRTLKDIY-----------RSKGIKSMSVV----QGKIYIG 787 (929)
Q Consensus 726 ~~~~~~~h~~~V~s--~s~~g-~~L~sgs~Dg~V~IWDl~~~~~~l~-----------~~~~V~sla~s----dg~llsg 787 (929)
......++...... +.-.. ...+++....+|.++.+.+....+. ....+..+... ...+..|
T Consensus 92 ~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG 171 (302)
T smart00036 92 NVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIG 171 (302)
T ss_pred cceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEE
Confidence 00011122221221 22111 2334445556777765443221111 12223233222 2356667
Q ss_pred ECCCcEEEEEccC--CccceecccccccccCC-CCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCe
Q 002389 788 CMDSSIQELAVSN--NVEREIKAPFKSWRLQS-KPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTI 863 (929)
Q Consensus 788 s~Dg~I~iwDl~t--g~~~~i~~~~~~~~~~~-~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V 863 (929)
+..+...++++.. ........+... .... .++....... ..+++++. ....+-|..+ .......-.-....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~sl~~~~-~~~~~~p~~i~~l~~-~e~Llc~~---~~~v~Vn~~G~~~~r~~~l~w~~~p 246 (302)
T smart00036 172 SDKGGGDVVQFHESLVSKEDLSLPFLS-EETSLKPISVVQVPR-DEFLLCYD---EFGVFVNLYGKRRSRNPILHWEFMP 246 (302)
T ss_pred EcCCCCeEEEEeecccccccccccccc-cccccCceEEEEECC-CeEEEEEC---cEEEEEeCCCCccccceEEEcCCcc
Confidence 7653344555533 111100000000 0111 4555455444 46666663 3455556554 22111111123345
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q 002389 864 QAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 864 ~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~ 900 (929)
.++++. ..|++.-+ ++.|.||++.+++.++++..
T Consensus 247 ~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 247 ESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 667776 35666665 55699999999999998875
No 421
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.26 E-value=24 Score=41.89 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=157.5
Q ss_pred chhhhccCCCCchhHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcch
Q 002389 91 FNEECLNGEKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEE 170 (929)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~ 170 (929)
++.+|.+..-.|..+.+..+=+++..|-.+.+-.=+. +|.-.|.-+ ..|.+.-.-...+.-++-.|++.|-.+. .
T Consensus 219 LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~-Da~WAlsyL---sdg~ne~iq~vi~~gvv~~LV~lL~~~~-~ 293 (514)
T KOG0166|consen 219 LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLT-DACWALSYL---TDGSNEKIQMVIDAGVVPRLVDLLGHSS-P 293 (514)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHH---hcCChHHHHHHHHccchHHHHHHHcCCC-c
Confidence 4567766666666678888888888886555544443 343333222 2232222223556666667777655544 4
Q ss_pred hhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccchhHHHHHHhccccccC
Q 002389 171 TVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKG 250 (929)
Q Consensus 171 ~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (929)
.|+-.++.-+.-+++.++.-.|.+.+ ...+|.|...+.++.+...
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~-----------------------------------~~~L~~l~~ll~~s~~~~i 338 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVIN-----------------------------------SGALPVLSNLLSSSPKESI 338 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHh-----------------------------------cChHHHHHHHhccCcchhH
Confidence 44444444446666666666665543 3567777777764443211
Q ss_pred cccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHH-hhhhccCcchhHHH
Q 002389 251 KLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILV-KCIQFDGQCRKYLS 329 (929)
Q Consensus 251 ~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~-~c~~~d~~cr~~ia 329 (929)
|+.|..++-++-.| |.+++.+++.-++++.|++.++.++.+=|..|+=.+. .|.-.+-.=-.|+.
T Consensus 339 ---------kkEAcW~iSNItAG-----~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 339 ---------KKEACWTISNITAG-----NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred ---------HHHHHHHHHHhhcC-----CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 35455555555443 5679999999999999999999999877666665554 66666655566788
Q ss_pred hhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhh----HHHHHHhhccCchhHHHHHHHHhhcccchh
Q 002389 330 EFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSA----IDLLQRIHKEGNINILHILKLSLQQLQSDY 397 (929)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~----~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~ 397 (929)
+.-=..||-.||-..+.+--..++.=|.=|++.-.-.. +..=..|-+.|+++-|+. ||+...|+
T Consensus 405 ~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~----LQ~hen~~ 472 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN----LQSHENEE 472 (514)
T ss_pred HcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH----hhccccHH
Confidence 87789999999977777776667777777777665332 333334444499888875 45555544
No 422
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.07 E-value=1.3e+02 Score=34.26 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=76.7
Q ss_pred EeCCEEEEEECCCeEEEEECCCCCeeEEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccC
Q 002389 657 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH--RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATK 734 (929)
Q Consensus 657 fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH--~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~ 734 (929)
..++.++.+..||.|.-.|..+++. +.....- ...+.+-.+..+|+ ++.++.+|.+...|..+|+.........
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~--~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~- 141 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLV--KWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG- 141 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcE--EecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-
Confidence 3478888889999888888888753 2221111 11222222223565 7788889989999998888665554433
Q ss_pred CCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeec-------cCCCeEEEEEeCCEEEEEEC--CCcEEEEEccCCcc
Q 002389 735 EPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIY-------RSKGIKSMSVVQGKIYIGCM--DSSIQELAVSNNVE 803 (929)
Q Consensus 735 ~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~-------~~~~V~sla~sdg~llsgs~--Dg~I~iwDl~tg~~ 803 (929)
.+.. ........++.++.++.+...|...-..... ...........++.++.+.. ++.+.-+|..+|..
T Consensus 142 ~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 142 SPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred CeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 1000 0111223333333555555555441111100 00001111144777777777 66777778877654
No 423
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.88 E-value=4.8 Score=42.95 Aligned_cols=136 Identities=17% Similarity=0.308 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccc
Q 002389 155 VILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLEL 234 (929)
Q Consensus 155 ~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~ 234 (929)
-++=-||...+.|+..|-+|.+ -+..+.+++|++=.+ |..||+ +.|.
T Consensus 123 lylYpfL~Tt~~~r~fEyLRLt-----------------------sLGVIgaLvk~dd~e--Vi~fLl--------~TeI 169 (293)
T KOG3036|consen 123 LYLYPFLNTTSKSRPFEYLRLT-----------------------SLGVIGALVKNDDQE--VIRFLL--------TTEI 169 (293)
T ss_pred hhhHHhhhccccCCchHHHhHH-----------------------HHHHHHHHHhcCcHH--HHHHHH--------Hhhh
Confidence 3444556666666666666643 134556677776555 555554 5699
Q ss_pred hhHHHHHHhccccccCcccccccCchhhHHHHHHHHHh---ccccccch-h--------------hhhhhchhhhHhHHH
Q 002389 235 LPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT---AFDYATNN-M--------------HLAAINSPRVLCGLL 296 (929)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~---~~~~~~~~-~--------------~~~~~~~~~~~~~l~ 296 (929)
||..++++++|+|. . |..|.+|+|.++. |..|.=.+ + ++...-+++.++-.+
T Consensus 170 VPlCLrime~GSel-S---------KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhvi 239 (293)
T KOG3036|consen 170 VPLCLRIMESGSEL-S---------KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVI 239 (293)
T ss_pred HHHHHHHHhcccHH-H---------HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999977 2 6788888887765 32221111 1 122223566666555
Q ss_pred HHhh--ccChHHHHHHHHH---------HHhhhhccCcchhHHHhhcC
Q 002389 297 DVAR--HQNLEELISLATI---------LVKCIQFDGQCRKYLSEFTA 333 (929)
Q Consensus 297 ~~~~--~~~~~e~~~~~~~---------l~~c~~~d~~cr~~ia~~~~ 333 (929)
++.- .+|.+-|.+...- -..|++.|+.|+..+++-++
T Consensus 240 RcYlrLsdnprar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~ 287 (293)
T KOG3036|consen 240 RCYLRLSDNPRARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLK 287 (293)
T ss_pred HHHHHhcCCHHHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHH
Confidence 5442 2355444443322 24578889999888877543
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=77.39 E-value=1.1e+02 Score=36.85 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCEEEEEEeCC--EEEEEE--CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEEcc
Q 002389 650 GAVTALIYYKG--LLCSGF--SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG----ESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 650 ~~Vtsl~fs~~--~LaSGs--~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg----~~LaSgs~DgtIrIWDl~ 721 (929)
.+|..++|.|| .+.|.- .+|.++.=|. ..+ |.-.-|..++|.|-+ ..|+.....+.|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-----~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-----KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-----cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 47889999855 344442 2343333222 223 333568999999853 357777788999999875
Q ss_pred C-----CeEEEEEEeccCCC--eE----EeccCCCEEEEEecCCeEEEEeCC----CceeeeccCCCeEEEEEe-CCE--
Q 002389 722 Q-----RKLELIEVIATKEP--IR----KLDTYGKTIFASTQGHRMKVIDSS----RTLKDIYRSKGIKSMSVV-QGK-- 783 (929)
Q Consensus 722 t-----g~~~~~~~~~h~~~--V~----s~s~~g~~L~sgs~Dg~V~IWDl~----~~~~~l~~~~~V~sla~s-dg~-- 783 (929)
. +++.....-...++ +. -|.|....+.+.+....-.++++. +....+...+.|.|-+|. ||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2 33322222223222 22 255666666666655544455554 222334456679999998 776
Q ss_pred EEEEECCCcEEEEEccC
Q 002389 784 IYIGCMDSSIQELAVSN 800 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~t 800 (929)
+++.+..=.-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 44445555668888655
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.19 E-value=51 Score=41.87 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=45.1
Q ss_pred EEEEeCCEEEEEECCCeEEEEECCCCCeeE-EEE------e--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 654 ALIYYKGLLCSGFSDGSIKMWDIKKQSAML-VWD------V--KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 654 sl~fs~~~LaSGs~DGtIrIWD~~~~~~~~-i~~------l--~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
|++-.++.++.|+.||.+.+|.+....... ... + .-+..+|+.+...+.-..++.-+ |+.|.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCccc
Confidence 566669999999999999999987642110 000 1 11356777776666555554444 7778888876543
No 426
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.97 E-value=15 Score=41.32 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=111.7
Q ss_pred hhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcC--ccchhhhhhcCCchhHHHHHHHHHH
Q 002389 281 MHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTA--VAPLACLLQSGEKRAIMIALEFFHE 358 (929)
Q Consensus 281 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~--~~~~~~l~~~~~~~~~~~~~~~~~e 358 (929)
++.+.|+.-|+|++|+.-+..||.+-+-.+..-+ .=|..|..-|+-+||.-+ ...+++|...+.+++++-|-.-|--
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttai-snIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAI-SNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHh-hhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh
Confidence 5778888899999999999999998876654433 347889999999999885 5789999999999999987554432
Q ss_pred HhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHH-HHhhhccccCCCCCCcchHHH--HHHHHHHHhcc
Q 002389 359 ILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAAN-LLLQLDTLENTTGKSVFTEEA--MQVILKAVASE 435 (929)
Q Consensus 359 l~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~-lllqld~l~~~~~~s~yreea--~~~~~~~l~~~ 435 (929)
| .+-++..+.|-+.|++-..--|| ++|+- |+++. ..--=.+=.-|-.-+.- -|| .+-|+.-|++.
T Consensus 278 l-----asdt~Yq~eiv~ag~lP~lv~Ll----qs~~~--plilasVaCIrnisihplNe~lI-~dagfl~pLVrlL~~~ 345 (550)
T KOG4224|consen 278 L-----ASDTEYQREIVEAGSLPLLVELL----QSPMG--PLILASVACIRNISIHPLNEVLI-ADAGFLRPLVRLLRAG 345 (550)
T ss_pred h-----cccchhhhHHHhcCCchHHHHHH----hCcch--hHHHHHHHHHhhcccccCcccce-ecccchhHHHHHHhcC
Confidence 2 22345666777778765433333 44433 33222 11111111223222221 122 34488999999
Q ss_pred CChhhhHHHHHHHHhcCcccccc
Q 002389 436 ESSTMQLLSSFILSNIGGTFSWT 458 (929)
Q Consensus 436 ~~~~~q~~~~~~l~~l~g~fs~s 458 (929)
||...|.-|-.+|-+|.|.+--+
T Consensus 346 dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 346 DNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred CchhhhhhHHHHHHHHhhhhhhh
Confidence 99999999999999999965443
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.93 E-value=1.1e+02 Score=37.06 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=81.2
Q ss_pred CCCCCEEEEEEeC-----C-EEEEEECCCeEEEEECCCC-----CeeEEEEeccC--CCcE--EEEEEcCCCCEEEEEeC
Q 002389 647 KCSGAVTALIYYK-----G-LLCSGFSDGSIKMWDIKKQ-----SAMLVWDVKEH--RKAV--TSFSLFEPGESLLSGSA 711 (929)
Q Consensus 647 gH~~~Vtsl~fs~-----~-~LaSGs~DGtIrIWD~~~~-----~~~~i~~l~gH--~~~V--tslafspdg~~LaSgs~ 711 (929)
|.-..|..+.|.+ . .+.+....+.|.||.+... +....++- .. .-+| ..+.|+|....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtc-Ei~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTC-EIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeee-eccCCcccCCCcccccCCCceEEEEec
Confidence 4456789999971 1 4666667788999988621 11111111 11 1122 35679999887665544
Q ss_pred CCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCC-eEEEEeCCCc-------eeeeccCCCeEEEEEe-
Q 002389 712 DKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGH-RMKVIDSSRT-------LKDIYRSKGIKSMSVV- 780 (929)
Q Consensus 712 DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg-~V~IWDl~~~-------~~~l~~~~~V~sla~s- 780 (929)
+..-.+.++..............+.|+ ||..+|++++++-.+. .-++||-.+. ...+.-+..|.++.-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 444345666544333333345556666 5889999877765443 6678886521 1122335667777766
Q ss_pred CCEEEEEE
Q 002389 781 QGKIYIGC 788 (929)
Q Consensus 781 dg~llsgs 788 (929)
|.+++.+.
T Consensus 213 dsqVAvaT 220 (671)
T PF15390_consen 213 DSQVAVAT 220 (671)
T ss_pred cceEEEEe
Confidence 66666554
No 428
>PRK09687 putative lyase; Provisional
Probab=76.89 E-value=49 Score=36.56 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 378 GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 378 ~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
|.-.+.-.+.-.++...+..|-.+|..|-|| ++|... +++|+..|...+....++.++..|+.+|-.++
T Consensus 51 ~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l---g~~~~~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 51 GGQDVFRLAIELCSSKNPIERDIGADILSQL---GMAKRC---QDNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCccc---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 4444444455567888999999999999885 444332 78999999988777778888998888886654
No 429
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=76.53 E-value=63 Score=38.82 Aligned_cols=133 Identities=12% Similarity=0.061 Sum_probs=84.8
Q ss_pred HHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHH
Q 002389 216 AILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGL 295 (929)
Q Consensus 216 ~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 295 (929)
.+|-++++....+-..-+..|.|.+-|...+.. + +..++.-+..++...+ .-+..+...+++..+
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~----V------r~l~l~~l~~~~~~~~-----~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHPSPK----V------RRLALKQLGRIARHSE-----GAAQLLVDNELLPLI 124 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHH----H------HHHHHHHHHHHhcCCH-----HHHHHhcCccHHHHH
Confidence 345555555555444446666776666653322 1 2444444555543221 224445578899999
Q ss_pred HHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCc
Q 002389 296 LDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPR 364 (929)
Q Consensus 296 ~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r 364 (929)
+..+..++.+-...|+.+|.+...-...+...+..+. ..-+..++...++..|..+++++.++.+.+.
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 9999988999888888888877765555543322222 4555556666577889999999999987775
No 430
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.28 E-value=36 Score=44.34 Aligned_cols=215 Identities=19% Similarity=0.078 Sum_probs=98.8
Q ss_pred EEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC----cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 653 TALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK----AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 653 tsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~----~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
..++|+ .+.+|.|..+|.|+++-...-+. ...|.. .++-+.|-...........+..+.+|.......
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ve~-----~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~- 112 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPGVEF-----VGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG- 112 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccceEE-----Eeccccccchhhhheeeeecccccceeecccceeeecccccce-
Confidence 344454 66899999999999998765432 112221 223333333333344455566677776543221
Q ss_pred EEEEeccCCCeEEeccCCC--EEEEEecCCeEEEEeCCCc-eeeec---cCCCeEEEEEeCCEEEEEECCCcEEEEEccC
Q 002389 727 LIEVIATKEPIRKLDTYGK--TIFASTQGHRMKVIDSSRT-LKDIY---RSKGIKSMSVVQGKIYIGCMDSSIQELAVSN 800 (929)
Q Consensus 727 ~~~~~~h~~~V~s~s~~g~--~L~sgs~Dg~V~IWDl~~~-~~~l~---~~~~V~sla~sdg~llsgs~Dg~I~iwDl~t 800 (929)
.-....+.++..++. . ..+ ..+.+++||.... ...+. ....-.... ...+..-. ..|....
T Consensus 113 ----~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~s~~~~-~~~~~~~ 179 (993)
T KOG1983|consen 113 ----VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPY------ESLSPTLS-IEGLVID 179 (993)
T ss_pred ----eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceecccccccccee------eeecccee-eeccccc
Confidence 112233344443332 3 445 7888999987621 11110 000000000 00000000 0000000
Q ss_pred -Cccce--ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 801 -NVERE--IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 801 -g~~~~--i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+.... ...+ .....+..++..............+. .+.+..|+.........+... ....++++..+++
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~ 251 (993)
T KOG1983|consen 180 LDTVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFN--RGLVVIKDRASKYVQSAYLPN-----GQLESRDGSHFVS 251 (993)
T ss_pred cccceeeccccc-ccccccccccceeeeecCCCcceeee--eeeeeehhcccccchhhcccc-----cccCccCCceEEE
Confidence 00000 0000 11122233344444443333333332 356666665544333222211 1112789999999
Q ss_pred EeCCCcEEEEECCCCcE
Q 002389 878 NSSASSLQIWLRGTQQK 894 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~ 894 (929)
+..||.+..||...++.
T Consensus 252 ~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 252 YHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEecCCEEeeecCCCce
Confidence 99999999999988755
No 431
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.14 E-value=2.2e+02 Score=35.73 Aligned_cols=319 Identities=14% Similarity=0.132 Sum_probs=174.6
Q ss_pred CCCchhHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHH
Q 002389 99 EKDAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVS 178 (929)
Q Consensus 99 ~~~~~~~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~ 178 (929)
|+-...|+..+|.+-|.+|+..-+-- =-|+|++--.++=+.. |.... -|+..+ --+..+++..|+=+.+.
T Consensus 132 g~i~s~EmardlapeVe~Ll~~~~~~-irKKA~Lca~r~irK~---P~l~e-----~f~~~~-~~lL~ek~hGVL~~~l~ 201 (866)
T KOG1062|consen 132 GNICSPEMARDLAPEVERLLQHRDPY-IRKKAALCAVRFIRKV---PDLVE-----HFVIAF-RKLLCEKHHGVLIAGLH 201 (866)
T ss_pred hccCCHHHhHHhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHcC---chHHH-----HhhHHH-HHHHhhcCCceeeeHHH
Confidence 34445667777777777775442211 1123443333332211 11111 112221 12456788999999999
Q ss_pred hhHhhhhcchhhhhhhhhcCCCchHHHHHHhh----cch-hhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCccc
Q 002389 179 ILTTIILANESVIEDIKKKGLRLSDLATALKR----NVP-EAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLE 253 (929)
Q Consensus 179 il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~----~~~-~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (929)
++.++...+..++..-.+ -+..|+..||+ +.+ |== . .-|--.+-|+.-+ -++++|..++..
T Consensus 202 l~~e~c~~~~~~l~~fr~---l~~~lV~iLk~l~~~~yspeyd-v-~gi~dPFLQi~iL----rlLriLGq~d~d----- 267 (866)
T KOG1062|consen 202 LITELCKISPDALSYFRD---LVPSLVKILKQLTNSGYSPEYD-V-HGISDPFLQIRIL----RLLRILGQNDAD----- 267 (866)
T ss_pred HHHHHHhcCHHHHHHHHH---HHHHHHHHHHHHhcCCCCCccC-c-cCCCchHHHHHHH----HHHHHhcCCCcc-----
Confidence 999999999988887766 56666666665 122 110 0 1111112222221 235666655432
Q ss_pred ccccCchhhHHH-HHHHHHhccccccchhhh------hhhchhh---hHhHH----HHHh-hccChHHHHHHHHHHHhhh
Q 002389 254 SVRLTPPAASLM-IIEVLVTAFDYATNNMHL------AAINSPR---VLCGL----LDVA-RHQNLEELISLATILVKCI 318 (929)
Q Consensus 254 ~~~~~p~~a~~~-~~~~l~~~~~~~~~~~~~------~~~~~~~---~~~~l----~~~~-~~~~~~e~~~~~~~l~~c~ 318 (929)
-...+. +|.|+.+--|.++|.-|+ .+|+++. +|.-| +.+| -+.+---|--+..-|++=|
T Consensus 268 ------aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 268 ------ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred ------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 122333 888998888888888763 4444321 11100 1111 1122222333444456666
Q ss_pred hccCc----chhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccC-------------------------------
Q 002389 319 QFDGQ----CRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIP------------------------------- 363 (929)
Q Consensus 319 ~~d~~----cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~------------------------------- 363 (929)
+.|-+ .|..| +|-|.--+..-|..|++|++-|+.-+
T Consensus 342 ~~d~~avqrHr~tI---------leCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTI---------LECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred cCCcHHHHHHHHHH---------HHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 66643 34443 44445556666666777666655432
Q ss_pred --------chhhHHHHHHhhccCch---hHHHHHHHHhhcccchh----------------------hHHHHHHHh----
Q 002389 364 --------RSSAIDLLQRIHKEGNI---NILHILKLSLQQLQSDY----------------------QLLAANLLL---- 406 (929)
Q Consensus 364 --------r~~~~~~l~~~~~~~~~---~~mh~~l~~lq~~~~~~----------------------~~~~a~lll---- 406 (929)
|+.+..+++.++..|.| .+.|.|++-+-.+++|. +|++-++.-
T Consensus 413 aEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGE 492 (866)
T KOG1062|consen 413 AEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGE 492 (866)
T ss_pred HHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhh
Confidence 45566677777777765 56888888888884432 222111110
Q ss_pred hhccccC------CCCCCcchHHHHHHHHHHHhccC-ChhhhHHHHHHHHhcCcccccc
Q 002389 407 QLDTLEN------TTGKSVFTEEAMQVILKAVASEE-SSTMQLLSSFILSNIGGTFSWT 458 (929)
Q Consensus 407 qld~l~~------~~~~s~yreea~~~~~~~l~~~~-~~~~q~~~~~~l~~l~g~fs~s 458 (929)
.=|||.+ |.+.+ -+|+++.|-+.+.+.. .+..-.-+--||+-|.-||-++
T Consensus 493 YGdlll~~~~~~~p~~vt--esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 493 YGDLLLDGANEEEPIKVT--ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred hhHHhhcCccccCCCcCC--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc
Confidence 1244533 44433 4788899988888873 5777777888899888888776
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.07 E-value=3.5 Score=50.81 Aligned_cols=59 Identities=22% Similarity=0.440 Sum_probs=44.7
Q ss_pred CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEE-----------EcCCCCEEEEEeCCCeEEEEEcc
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFS-----------LFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtsla-----------fspdg~~LaSgs~DgtIrIWDl~ 721 (929)
-++..+-.+|+|++-+..+... ..+.+|...++.++ .+|||..++++..||.++.|.+.
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeeeccCCCceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 3788888899999888776532 33456887776654 47899999999999999988763
No 433
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=75.44 E-value=18 Score=31.62 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred cchhhhh-hcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccC
Q 002389 335 APLACLL-QSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLEN 413 (929)
Q Consensus 335 ~~~~~l~-~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~ 413 (929)
+++++.| ...+...|..|++.|.++ |.-.....|+..++..-+.-|--++.-|=++.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~------------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL------------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG---- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC------------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc------------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 3566766 566777777777766622 12234455555566666666666666665541
Q ss_pred CCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHH
Q 002389 414 TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 448 (929)
Q Consensus 414 ~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l 448 (929)
.+++++.|.+.|...++..++..|+.||
T Consensus 60 -------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 5889999999999988888899888887
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=73.84 E-value=9.4 Score=29.67 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=26.3
Q ss_pred CcEEEEEEcCCCC---EEEEEeCCCeEEEEEccCC
Q 002389 692 KAVTSFSLFEPGE---SLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 692 ~~Vtslafspdg~---~LaSgs~DgtIrIWDl~tg 723 (929)
++|.++.|+|+.. .|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999998544 7888888899999999853
No 435
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=73.70 E-value=1e+02 Score=33.64 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHHHhcCCCch-
Q 002389 153 QDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIYLIKPSPT- 227 (929)
Q Consensus 153 ~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~~l~~~~~~- 227 (929)
-|.-++-|+-.|-.+.++-+.+.+...|.....+. .+...|-+.| .+..+..+|... +. +|.--+.=+.+...
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLG-GISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 34556889999999999999999999988865443 4444444433 456666677774 33 34333332222222
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHH
Q 002389 228 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 307 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 307 (929)
+..--..++.+++-+.+.. . .... +-|++-+|-.|-.-.|+ .++++ ..++.+++.+..|+.+-|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~-l-ns~~------Q~agLrlL~nLtv~~~~-------~~~l~-~~i~~ll~LL~~G~~~~k 151 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP-L-NSEV------QLAGLRLLTNLTVTNDY-------HHMLA-NYIPDLLSLLSSGSEKTK 151 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC-C-CCHH------HHHHHHHHHccCCCcch-------hhhHH-hhHHHHHHHHHcCChHHH
Confidence 1111123455444443321 1 1111 25677777777221221 12222 346777888889999999
Q ss_pred HHHHHHHHhhhhccCcc-hhHHHhhcCccchhhhhhcCCchh-HHHHHHHHH
Q 002389 308 ISLATILVKCIQFDGQC-RKYLSEFTAVAPLACLLQSGEKRA-IMIALEFFH 357 (929)
Q Consensus 308 ~~~~~~l~~c~~~d~~c-r~~ia~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 357 (929)
..+..+|+ ++-.+... |..|+.. -+++|+.||++...++ -..++.||.
T Consensus 152 ~~vLk~L~-nLS~np~~~~~Ll~~q-~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 152 VQVLKVLV-NLSENPDMTRELLSAQ-VLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred HHHHHHHH-HhccCHHHHHHHHhcc-chhHHHHHHccCCccHHHHHHHHHHH
Confidence 99988554 55555554 5555555 5889999999986554 555666554
No 436
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.50 E-value=20 Score=46.54 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=84.2
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEE----------eccCCCEEEEEecCCeEEEEeCC-----Ccee------ee
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRK----------LDTYGKTIFASTQGHRMKVIDSS-----RTLK------DI 768 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s----------~s~~g~~L~sgs~Dg~V~IWDl~-----~~~~------~l 768 (929)
+.|+.+.+|+.+++. ......+....|.. |.++=+++++.+.--.|.++-+. .... .+
T Consensus 96 TiDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 448899999998854 22333333333433 22333355555555556655433 1111 11
Q ss_pred -ccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 769 -YRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 769 -~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
..+..|.|+... +|+++.+|.||.++.+-..... -|.+.. .+.+....+.. . .+.=|
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~---------gWf~~r--c~Kiclt~s~l--s-------~lvPs- 233 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAED---------GWFGSR--CRKICLTKSVL--S-------SLVPS- 233 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccC---------chhhcc--cccccCchhHH--H-------Hhhhh-
Confidence 124458888865 9999999999966555444321 111110 00011000000 0 00000
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 847 RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 847 l~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
.......+..+|..+........+.+-++.|+|.+|++..
T Consensus 234 -----~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 234 -----LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -----hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1111135677899999998888899999999999999765
No 437
>PRK09687 putative lyase; Provisional
Probab=72.57 E-value=1.1e+02 Score=33.91 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCchh---hhhhccC-Ccccch-----h
Q 002389 422 EEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWL---QNMIRNF-DWLDQS-----L 492 (929)
Q Consensus 422 eea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~~~---~~~~~~~-~~~~~~-----~ 492 (929)
++|+++|+.+|+.. ++.+...|+.+|-.+ -.+.|-+..-|++.- .+... ..-++.. .+.+.. .
T Consensus 158 ~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~-----~~~~~~~~~~L~~~L--~D~~~~VR~~A~~aLg~~~~~~av~~Li 229 (280)
T PRK09687 158 EAAIPLLINLLKDP-NGDVRNWAAFALNSN-----KYDNPDIREAFVAML--QDKNEEIRIEAIIGLALRKDKRVLSVLI 229 (280)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHh--cCCChHHHHHHHHHHHccCChhHHHHHH
Confidence 67788888888754 445666666666555 113444444444443 22210 0000000 000100 0
Q ss_pred hhhchhhhhHHHHHHHHhcCh-hHHHHHHhhhh
Q 002389 493 QDRGVDSWSSKIAKSIIEIGK-PIYYALEKGLK 524 (929)
Q Consensus 493 ~~~~~~~w~~~~~~~l~~~g~-~~l~aL~~~l~ 524 (929)
+.-..+.|...++.+|=..|. ..+.+|.+.+.
T Consensus 230 ~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~ 262 (280)
T PRK09687 230 KELKKGTVGDLIIEAAGELGDKTLLPVLDTLLY 262 (280)
T ss_pred HHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHh
Confidence 111233466667777666664 46666666664
No 438
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=71.85 E-value=4 Score=50.40 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=56.9
Q ss_pred EEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE-----------EecCCCEEEEEeCCCcEEEEECC-CC----cEEEE
Q 002389 834 SSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA-----------VVEDFIYLNYNSSASSLQIWLRG-TQ----QKVGR 897 (929)
Q Consensus 834 s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla-----------fSpdg~~LaSgS~DG~I~IWdl~-sg----~~i~t 897 (929)
++.-+|++|++.+.+.... ..+.+|..++..++ .||||..++..+.||.++.|.+. +| .++..
T Consensus 199 c~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 199 CYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred eeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 3444677888766554332 44556877666654 48999999999999999988632 22 33455
Q ss_pred EeCCC--CeEEEEEc---------CC--EEEEEEC-CCcEEEeec
Q 002389 898 ISAGS--KITSLLTA---------ND--IVLCGTE-TGLIKGWIP 928 (929)
Q Consensus 898 l~~h~--~Vtsvs~d---------g~--~LaSgs~-DG~I~IWdi 928 (929)
++.|. +-.|+-++ |. +++++++ +.-+++|..
T Consensus 278 wkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred cCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 55553 32332233 22 4455544 445888863
No 439
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.02 E-value=3.1e+02 Score=34.86 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=44.3
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEE-------------EEEEcC--CCCEEEEEeC----------CC
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVT-------------SFSLFE--PGESLLSGSA----------DK 713 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vt-------------slafsp--dg~~LaSgs~----------Dg 713 (929)
++.++.++.|+.+.-.|.++++. +..+ +..+.|. .+.-.| .+..++.|+. +|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~--~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKL--CEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCE--EEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 56888899999999999998864 4444 1222110 111112 2345666643 68
Q ss_pred eEEEEEccCCeEEEEEEe
Q 002389 714 TIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~ 731 (929)
.|+-+|..+|+.......
T Consensus 337 ~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EEEEEECCCCcEeeEEec
Confidence 899999999997665543
No 440
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=69.91 E-value=1.9e+02 Score=32.28 Aligned_cols=107 Identities=7% Similarity=0.010 Sum_probs=50.6
Q ss_pred EEeCCEEEEEECC-----CeEEEEECCCCCee-EEEEeccCCCcE--EEEEEcCCCCEEEEEeC-----CCeEEEEEccC
Q 002389 656 IYYKGLLCSGFSD-----GSIKMWDIKKQSAM-LVWDVKEHRKAV--TSFSLFEPGESLLSGSA-----DKTIGVWQMVQ 722 (929)
Q Consensus 656 ~fs~~~LaSGs~D-----GtIrIWD~~~~~~~-~i~~l~gH~~~V--tslafspdg~~LaSgs~-----DgtIrIWDl~t 722 (929)
...+..++.|+.+ ..+..+|+.+.+.. ....+..-..+. .+++. -++...+.|+. ...+..||+.+
T Consensus 70 ~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 70 SVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 3345566667654 35667777765431 011221111111 12222 24555566664 24678889887
Q ss_pred CeEEEEEEecc--CCCeEEeccCCCEEEEEecCC----eEEEEeCCC
Q 002389 723 RKLELIEVIAT--KEPIRKLDTYGKTIFASTQGH----RMKVIDSSR 763 (929)
Q Consensus 723 g~~~~~~~~~h--~~~V~s~s~~g~~L~sgs~Dg----~V~IWDl~~ 763 (929)
.+......... .........++...+.|+.++ .+..||...
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 76543321111 111112234555556666543 356788763
No 441
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=69.65 E-value=1.8e+02 Score=33.88 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002389 861 TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg 892 (929)
..|.+++..+..+.+++-+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34999999999999999999999999998743
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.61 E-value=78 Score=30.99 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=61.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCeE------EEEEEeccCCCeEEec-----c--CCCEEEEEecCCeEEEEeCCC
Q 002389 697 FSLFEPGESLLSGSADKTIGVWQMVQRKL------ELIEVIATKEPIRKLD-----T--YGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 697 lafspdg~~LaSgs~DgtIrIWDl~tg~~------~~~~~~~h~~~V~s~s-----~--~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
-.|......|+.++.-|.|.|.+...... ...........|+++. + ..+.++. +....+..||+.+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~Lli-Gt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLI-GTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEE-eccceEEEEEccc
Confidence 35555556688888888888887653211 1122333445566542 1 2334444 4456799999987
Q ss_pred ceeeecc--CCCeEEEEEe-----CCEEEEEECCCcEEEEEccC
Q 002389 764 TLKDIYR--SKGIKSMSVV-----QGKIYIGCMDSSIQELAVSN 800 (929)
Q Consensus 764 ~~~~l~~--~~~V~sla~s-----dg~llsgs~Dg~I~iwDl~t 800 (929)
....+.. ..+|.++.+- +..++..+.+..|.-||...
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 6665554 5678888773 33466555566666666554
No 443
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=68.80 E-value=30 Score=41.87 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=42.3
Q ss_pred eCCEEEEEECCCeEEEEECCC---CCeeEEE-EeccC--------------------CCcEEEEEEcC----CCCEEEEE
Q 002389 658 YKGLLCSGFSDGSIKMWDIKK---QSAMLVW-DVKEH--------------------RKAVTSFSLFE----PGESLLSG 709 (929)
Q Consensus 658 s~~~LaSGs~DGtIrIWD~~~---~~~~~i~-~l~gH--------------------~~~Vtslafsp----dg~~LaSg 709 (929)
+++.++.+..||.+...+... ....... .+..+ .+.+..+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455778888888887776654 1111011 11111 23456666666 67789999
Q ss_pred eCCCeEEEEEccCCeEEEE
Q 002389 710 SADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~ 728 (929)
+.|+++|+||+.++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp ETTSEEEEEETTTTCEEEE
T ss_pred eCCCeEEEEECCCCeEEEE
Confidence 9999999999999987443
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=3.1e+02 Score=34.26 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=43.5
Q ss_pred CCCEEEEEEeCCEEEEE-ECCCeEEEEECCCCCeeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 649 SGAVTALIYYKGLLCSG-FSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSG-s~DGtIrIWD~~~~~~~~i~~l-~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.+..-+|..++..+... +.--.|+|++..+.- +..+ ..|. .+-.+.|+.+. .|+....||+++|+++-.
T Consensus 43 ~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~l---L~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLYSARPYIRIFNISGQL---LGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred cCCceEEEecccccccccccceeEEEEeccccc---hHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecch
Confidence 44455566654322211 333468899988642 2333 3344 77889998655 466778899999999854
No 445
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=68.28 E-value=2.1e+02 Score=32.11 Aligned_cols=228 Identities=12% Similarity=0.043 Sum_probs=103.3
Q ss_pred CEEEEEEeCCEEEEEECCCeEEEEECCCCC-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeEEEE
Q 002389 651 AVTALIYYKGLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELI 728 (929)
Q Consensus 651 ~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~-~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~~~~ 728 (929)
..++|.|.++....++..|.| +...+.++ ...+..-..-.+....+....++...+ ++..|. ||...+ |+--..
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~--iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGA--IYRTTDGGKTWQA 138 (302)
T ss_dssp EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT----EEEESSTTSSEEE
T ss_pred eEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCc--EEEeCCCCCCeeE
Confidence 466788875533334555643 33333333 222211111123334444444443333 444554 343333 322122
Q ss_pred EEeccCCCeEEe--ccCCCEEEEEecCCeEEEEeCCCc-eee--eccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCc
Q 002389 729 EVIATKEPIRKL--DTYGKTIFASTQGHRMKVIDSSRT-LKD--IYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 729 ~~~~h~~~V~s~--s~~g~~L~sgs~Dg~V~IWDl~~~-~~~--l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~ 802 (929)
........+..+ .++|.+++++...+-..-||.... -.. .....++..|.|. ++.++.....|.++.=+.....
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG 218 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc
Confidence 223334455543 478888888777777778887642 222 2236779999998 7788878899998888722211
Q ss_pred cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec---CCCCCeEEEEEecCCCEEEEEe
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~---~h~~~V~slafSpdg~~LaSgS 879 (929)
. ....+........-.+..+++.++...-++.. +| .-+...+.|+.-+... .-...++.+.|.++.+-++.|
T Consensus 219 ~-~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 219 E-TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SG-TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp E-EE---B-TTSS--S-EEEEEESSSS-EEEEES--TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred c-ccccccCCcccCceeeEEEEecCCCCEEEEeC--Cc-cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 1 11111011112244477888887655555443 33 3344555565444332 224568899998776666666
Q ss_pred CCCcEEEE
Q 002389 880 SASSLQIW 887 (929)
Q Consensus 880 ~DG~I~IW 887 (929)
.+|.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 58877554
No 446
>PF05536 Neurochondrin: Neurochondrin
Probab=68.17 E-value=1.4e+02 Score=36.32 Aligned_cols=271 Identities=17% Similarity=0.159 Sum_probs=152.1
Q ss_pred ccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchH----HHHHHh---h--cchhhHHHHH
Q 002389 150 DMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSD----LATALK---R--NVPEAAILIY 220 (929)
Q Consensus 150 ~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~lk---~--~~~~~~vl~~ 220 (929)
.+.+...|.-|.|++.+ .....+.+..||..+.+.-. .+.|.+.-..+.- ++..++ . .|.=-.+|-+
T Consensus 135 aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~ 210 (543)
T PF05536_consen 135 ALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSA 210 (543)
T ss_pred HHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 35566677888888877 77888999999888887644 3334332222222 222332 2 1444566777
Q ss_pred hcCCCchh----hhhccchhHHHHHHhccccccCcccccccCc--hhhHHHHHHHHHhcc--c---cccc-h-hh----h
Q 002389 221 LIKPSPTE----IKTLELLPTLVEVICTSKLYKGKLESVRLTP--PAASLMIIEVLVTAF--D---YATN-N-MH----L 283 (929)
Q Consensus 221 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~a~~~~~~~l~~~~--~---~~~~-~-~~----~ 283 (929)
++.+.+.. .....|++.+..-|.. -++-+++| +.+|+-+...|+..+ + ...+ . .. +
T Consensus 211 ~L~~~~~~~~~~~~~~~W~~~l~~gl~~-------iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Ll 283 (543)
T PF05536_consen 211 FLPRSPILPLESPPSPKWLSDLRKGLRD-------ILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLL 283 (543)
T ss_pred hcCcCCccccccCChhhhHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHH
Confidence 77777322 3444566665544431 01112233 356666777777642 1 1111 1 11 1
Q ss_pred hhhchhhhHhHHHHH-hhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCcc-chhhhhhcCCchhHHHHHHHHHHHhc
Q 002389 284 AAINSPRVLCGLLDV-ARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVA-PLACLLQSGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 284 ~~~~~~~~~~~l~~~-~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~-~~~~l~~~~~~~~~~~~~~~~~el~~ 361 (929)
..+.... ++-.++- ++..+.++.......|..|-.-=...-+|+++..+.. ..++ --.+++
T Consensus 284 v~l~~VE-ir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~----------------~~~l~k 346 (543)
T PF05536_consen 284 VNLACVE-IRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLD----------------PDTLLK 346 (543)
T ss_pred HHHHHHH-HHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC----------------HHHHHH
Confidence 1111111 1111111 2336788888888889888777777777777755522 2222 122333
Q ss_pred cCc------hhhHHHHHHhhcc------CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcch--------
Q 002389 362 IPR------SSAIDLLQRIHKE------GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFT-------- 421 (929)
Q Consensus 362 l~r------~~~~~~l~~~~~~------~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yr-------- 421 (929)
+.+ +.+.++|+..+++ -.+.+..+|=.||-..|-+.+.-+..|| |.|.+--+.+-++
T Consensus 347 l~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~Ll---~~ll~~~~~~~~~~~~~~~~~ 423 (543)
T PF05536_consen 347 LRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEVYGLL---PFLLSLYRESFQEAEPAREGP 423 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHHHHHH---HHHHHHHhhhhhhcccccccc
Confidence 333 1255677776664 3466788888999998888888888776 4444433333332
Q ss_pred HHHHHHHHHHHhccCChhhhHHHHHHHHhcCcc
Q 002389 422 EEAMQVILKAVASEESSTMQLLSSFILSNIGGT 454 (929)
Q Consensus 422 eea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~ 454 (929)
=+++.-++=+|.+ -.+....+++++..||+
T Consensus 424 ~d~~r~lLPaL~~---lt~e~~gr~~l~~~~g~ 453 (543)
T PF05536_consen 424 LDFLRFLLPALCH---LTAEEEGRKILLSNGGW 453 (543)
T ss_pred hhHHHHHHHHHhh---hhccHHHHHHHHhCCcH
Confidence 3566667777654 34456678888888775
No 447
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=67.40 E-value=31 Score=30.09 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=46.3
Q ss_pred HHHHHhhccc-chhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhh
Q 002389 385 ILKLSLQQLQ-SDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYT 463 (929)
Q Consensus 385 ~~l~~lq~~~-~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~ 463 (929)
.|+-.|++.+ +.-|--++..|- .+..++++..|++.| ..+++.++..|+.||-.+| ++=.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~-----------~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~-------~~~~ 63 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALG-----------ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIG-------DPEA 63 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH-----------CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH-------HHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH-----------HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC-------CHHH
Confidence 3566664443 444544444443 334679999999999 4579999999999999884 4555
Q ss_pred HHHHHHHh
Q 002389 464 VAWLVKKA 471 (929)
Q Consensus 464 ~~~llk~a 471 (929)
...|.+..
T Consensus 64 ~~~L~~~l 71 (88)
T PF13646_consen 64 IPALIKLL 71 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666644
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.40 E-value=41 Score=35.70 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
...|..+...+++.-.+..+ +|..+.||.+-+.-.
T Consensus 66 ~~~i~~~~lt~~G~PiV~ls--ng~~y~y~~~L~~W~ 100 (219)
T PF07569_consen 66 SPNITSCSLTSNGVPIVTLS--NGDSYSYSPDLGCWI 100 (219)
T ss_pred CCcEEEEEEcCCCCEEEEEe--CCCEEEeccccceeE
Confidence 45677777777777777776 456788887665433
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=66.40 E-value=25 Score=26.04 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=28.9
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 002389 870 EDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLT 909 (929)
Q Consensus 870 pdg~~LaSgS-~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~ 909 (929)
|+++++..+. .+++|.++|..+++.+.++..+..-..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5677665544 689999999999999988887643444443
No 450
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.14 E-value=47 Score=37.22 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=83.1
Q ss_pred hhhHhHHHHHhhccChHHHHHHHHH-HHhhhhcc--CcchhHHHhhcCccchhhhhhcCCc--hhHHH---HHHHHHHHh
Q 002389 289 PRVLCGLLDVARHQNLEELISLATI-LVKCIQFD--GQCRKYLSEFTAVAPLACLLQSGEK--RAIMI---ALEFFHEIL 360 (929)
Q Consensus 289 ~~~~~~l~~~~~~~~~~e~~~~~~~-l~~c~~~d--~~cr~~ia~~~~~~~~~~l~~~~~~--~~~~~---~~~~~~el~ 360 (929)
..++..+++.++.|..+|+.-|+.+ =+.|++.+ ..+.. |.+.+. .++.+.+..+.. ++|.. |+.+++-+.
T Consensus 85 ~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-i~~~~~-~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 85 ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE-IFEELK-PVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH-HHHHHH-HHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 3456788888888988888877664 45899965 33333 333222 244456665533 33333 334444443
Q ss_pred ccCchhhHHHHHHhhccCchhHHH--HHHHHhhcc--------cchhhHHHHHHHhhhc---cccCCCCCCcchHHHHHH
Q 002389 361 RIPRSSAIDLLQRIHKEGNINILH--ILKLSLQQL--------QSDYQLLAANLLLQLD---TLENTTGKSVFTEEAMQV 427 (929)
Q Consensus 361 ~l~r~~~~~~l~~~~~~~~~~~mh--~~l~~lq~~--------~~~~~~~~a~lllqld---~l~~~~~~s~yreea~~~ 427 (929)
+-.-..... .+..|. -++.|++.. ++....++|.| ---= .+.++.+..-+-++++..
T Consensus 163 ~~d~~~~~~---------~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL-~aW~lLlt~~~~~~~~~~~~~~~~~ 232 (309)
T PF05004_consen 163 GSDEEETEE---------LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL-SAWALLLTTLPDSKLEDLLEEALPA 232 (309)
T ss_pred cCChhHHHH---------HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333211111 112344 223344332 22223333332 1111 224455555667899999
Q ss_pred HHHHHhccCChhhhHHHHHHHHhc
Q 002389 428 ILKAVASEESSTMQLLSSFILSNI 451 (929)
Q Consensus 428 ~~~~l~~~~~~~~q~~~~~~l~~l 451 (929)
|.+-|++. +..+|+.|.++|..|
T Consensus 233 l~~lL~s~-d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 233 LSELLDSD-DVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHH
Confidence 99999866 889999999999776
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=65.97 E-value=2.6e+02 Score=32.53 Aligned_cols=139 Identities=7% Similarity=0.043 Sum_probs=73.1
Q ss_pred cCCCEEEEEecCCeEEEEeCCCce-e--eeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccc---eecccccccc
Q 002389 742 TYGKTIFASTQGHRMKVIDSSRTL-K--DIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVER---EIKAPFKSWR 814 (929)
Q Consensus 742 ~~g~~L~sgs~Dg~V~IWDl~~~~-~--~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~---~i~~~~~~~~ 814 (929)
+++..++.+.....++-||-.... . .......+..+.+. ++.++..+.+|.+..- ...+... .+... ...
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~~~--~~~ 324 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFEEA--DIK 324 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccceeec--ccC
Confidence 445455554444444445544321 2 22234557788886 7777777777775443 2222211 11000 001
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 002389 815 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNYNSSASSLQIW 887 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~---~h~~~V~slafSpdg~~LaSgS~DG~I~IW 887 (929)
.....+..+.+.++....++. .+|.+... .+.++.-+... .-....+.+.|.++++-+++| .+|.|.-|
T Consensus 325 ~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 325 SRGFGILDVGYRSKKEAWAAG--GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceEEEEEcCCCcEEEEE--CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 123457778777776655544 34544444 34444333322 224568899998888777776 47776554
No 452
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.52 E-value=82 Score=35.73 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=91.3
Q ss_pred HhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHH-HHhhc---ch-hhHHHHHhcCCCc---hhhhhccch
Q 002389 164 ISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLAT-ALKRN---VP-EAAILIYLIKPSP---TEIKTLELL 235 (929)
Q Consensus 164 ~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~---~~-~~~vl~~l~~~~~---~~~~~~~~~ 235 (929)
+..|.+..|+...-+- -..+..|+.+|+++...+|++-+-.- +...+ +. .|..-++-|..-. -|+.+..=+
T Consensus 216 ll~s~d~dvqyyctta-isnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~l 294 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTA-ISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSL 294 (550)
T ss_pred hhccCChhHHHHHHHH-hhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCc
Confidence 4567888999888887 55678999999999999998866444 55444 32 4544444444332 367777889
Q ss_pred hHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHH-HHHHHHHH
Q 002389 236 PTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEE-LISLATIL 314 (929)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e-~~~~~~~l 314 (929)
|++|+.|++.- .|. -.|+|+-+..+- ...-|..-+.--|+|+-|++-++.|+-|| +-+|++.|
T Consensus 295 P~lv~Llqs~~----~pl------ilasVaCIrnis------ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 295 PLLVELLQSPM----GPL------ILASVACIRNIS------IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred hHHHHHHhCcc----hhH------HHHHHHHHhhcc------cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 99999996422 111 267777665552 22223444556789999999999998886 66666655
Q ss_pred H
Q 002389 315 V 315 (929)
Q Consensus 315 ~ 315 (929)
-
T Consensus 359 r 359 (550)
T KOG4224|consen 359 R 359 (550)
T ss_pred H
Confidence 3
No 453
>PRK13616 lipoprotein LpqB; Provisional
Probab=65.13 E-value=3.4e+02 Score=33.45 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=32.7
Q ss_pred CCEEEEEEe-CC-EEEEEE------CCC--eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 002389 650 GAVTALIYY-KG-LLCSGF------SDG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA 711 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs------~DG--tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~ 711 (929)
..+...+++ ++ .++..- .|+ .+.+++..... . ....+. ..+.-.|+|||+.+++.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~--~lt~g~--~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-V--QVLEGH--SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-e--eeecCC--CCCCceECCCCCceEEEec
Confidence 467777887 33 444332 243 45555653322 2 222332 3778899999998887763
No 454
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=64.47 E-value=36 Score=39.37 Aligned_cols=150 Identities=11% Similarity=0.134 Sum_probs=84.5
Q ss_pred eccCCCEEEEEecCCeEEEEeCCCceeeecc------CC---CeE-EEE-EeCCE-EEEEECCCcEEEE-EccCCcccee
Q 002389 740 LDTYGKTIFASTQGHRMKVIDSSRTLKDIYR------SK---GIK-SMS-VVQGK-IYIGCMDSSIQEL-AVSNNVEREI 806 (929)
Q Consensus 740 ~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~------~~---~V~-sla-~sdg~-llsgs~Dg~I~iw-Dl~tg~~~~i 806 (929)
+.|+|+.++.-+. .++.++++.+......+ +. .|. .+. .+.|. +++++.||-|..| |+..+....
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~- 305 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPH- 305 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCc-
Confidence 5799998888776 78889988743222211 11 122 111 23555 8889999999888 444432211
Q ss_pred cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 002389 807 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQI 886 (929)
Q Consensus 807 ~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~I 886 (929)
..-.+.++....++..+....+..-..+.+ ..|++..+.....+.+-.. .--..+.-+++||++.++++-. .|.|++
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~-~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~ 382 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLY-RNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMSPNQAYLLSED-QGKIRL 382 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEc-CCCceeeeecccCcceehh-hhhcCcceeeeCcccchheeec-CCceEE
Confidence 111133333344444444444444444454 3456666654433322211 1122566789999999998863 688999
Q ss_pred EECCCCcE
Q 002389 887 WLRGTQQK 894 (929)
Q Consensus 887 Wdl~sg~~ 894 (929)
+.+++..+
T Consensus 383 ~~l~Nr~P 390 (733)
T COG4590 383 AQLENRNP 390 (733)
T ss_pred EEecCCCC
Confidence 98876544
No 455
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=63.84 E-value=2.5e+02 Score=31.47 Aligned_cols=223 Identities=13% Similarity=0.106 Sum_probs=97.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE-eccC----CCeEEeccCCCEEEEEecCCeEEEEeCC-C
Q 002389 690 HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV-IATK----EPIRKLDTYGKTIFASTQGHRMKVIDSS-R 763 (929)
Q Consensus 690 H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~-~~h~----~~V~s~s~~g~~L~sgs~Dg~V~IWDl~-~ 763 (929)
-..++.+|.|..+..-++.|. .++| +...+|-...... .... ....++...++..+.++..+.|..-.=. .
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~ 91 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGK 91 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCC
Confidence 355899999985444466554 5653 4443332111111 1111 1234455445555556665543322211 2
Q ss_pred ceeeecc----CCCeEEE-EEeCCEEEEEECCCcEEEEEccCCc-c-ceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 764 TLKDIYR----SKGIKSM-SVVQGKIYIGCMDSSIQELAVSNNV-E-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 764 ~~~~l~~----~~~V~sl-a~sdg~llsgs~Dg~I~iwDl~tg~-~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
.-..+.. ......+ +..++.....+..|.| |-...+. . ..+. ......+..+...+++.+.+..+
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~i--y~T~DgG~tW~~~~------~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAI--YRTTDGGKTWQAVV------SETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--E--EEESSTTSSEEEEE-------S----EEEEEE-TTS-EEEEET
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcE--EEeCCCCCCeeEcc------cCCcceeEeEEECCCCcEEEEEC
Confidence 2222111 1122223 3346665555555553 3322221 1 1111 12245677777788888776554
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-CCCCcEEEE--Ee--CC-CCeEEEEEc
Q 002389 837 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL-RGTQQKVGR--IS--AG-SKITSLLTA 910 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd-l~sg~~i~t--l~--~h-~~Vtsvs~d 910 (929)
.+....-||.-...-...-......|..|.|+|++...+.+ ..|.|+.=+ ....+.... .. .. ..+..++|.
T Consensus 164 -~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 164 -RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR 241 (302)
T ss_dssp -TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred -cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence 55566678765433333333456789999999998876655 788888776 222222222 11 11 227778886
Q ss_pred -CCEEEEEECCCcEEE
Q 002389 911 -NDIVLCGTETGLIKG 925 (929)
Q Consensus 911 -g~~LaSgs~DG~I~I 925 (929)
++.+..++..|.+..
T Consensus 242 ~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 242 PPNEIWAVGGSGTLLV 257 (302)
T ss_dssp SSS-EEEEESTT-EEE
T ss_pred CCCCEEEEeCCccEEE
Confidence 445555666665543
No 456
>PLN02153 epithiospecifier protein
Probab=63.82 E-value=2e+02 Score=32.40 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred EEEeCCEEEEEECC-----CeEEEEECCCCCeeEEEEeccC--CCc--EEEEEEcCCCCEEEEEeCC-----------Ce
Q 002389 655 LIYYKGLLCSGFSD-----GSIKMWDIKKQSAMLVWDVKEH--RKA--VTSFSLFEPGESLLSGSAD-----------KT 714 (929)
Q Consensus 655 l~fs~~~LaSGs~D-----GtIrIWD~~~~~~~~i~~l~gH--~~~--Vtslafspdg~~LaSgs~D-----------gt 714 (929)
+.+.+..++.|+.+ ..+.+||..+.+...+..+... ..+ -.+++ .-+++..+.|+.+ ..
T Consensus 82 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred EEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccce
Confidence 33345566666653 3578899988765433322110 111 11222 2355666666653 25
Q ss_pred EEEEEccCCeEE
Q 002389 715 IGVWQMVQRKLE 726 (929)
Q Consensus 715 IrIWDl~tg~~~ 726 (929)
+.+||..+.+..
T Consensus 161 v~~yd~~~~~W~ 172 (341)
T PLN02153 161 IEAYNIADGKWV 172 (341)
T ss_pred EEEEECCCCeEe
Confidence 778898877654
No 457
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=62.75 E-value=2.9e+02 Score=31.94 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=35.4
Q ss_pred EEEEEECCCe--EEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 661 LLCSGFSDGS--IKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 661 ~LaSGs~DGt--IrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
+|+++..||. +.+-|+.+++. ..+..+. .......++|+++.++-...++.++--|+.+.+....
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i---~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEI---TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EE---EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred EEEEeccCCCcceEEEEcccCEE---EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 5666666765 45557777753 3343332 2222456778888877666667888889988765433
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.59 E-value=1.5e+02 Score=36.89 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCeEEEEEe--CCE--EEEEECCCcEEEEEccCCc----------c-----ceecccccccccCCCCeEEEEEc--CCce
Q 002389 772 KGIKSMSVV--QGK--IYIGCMDSSIQELAVSNNV----------E-----REIKAPFKSWRLQSKPINSLVVY--KDWL 830 (929)
Q Consensus 772 ~~V~sla~s--dg~--llsgs~Dg~I~iwDl~tg~----------~-----~~i~~~~~~~~~~~~~I~sl~~~--~d~i 830 (929)
+.|+-|.+. .+. ++++..||.|.+|.+.+-. . ..+++... ..-+.....+++| ....
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~--~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH--LRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE--eecCCceeEEEEEecCcce
Confidence 345666554 333 7778899999999773210 0 01111111 1124467778888 6655
Q ss_pred EEEEEecCCCeEEEEECCC--CC-eEEEecCCCCCeEEEEEecCC------CEEEEEeCCCcEEEEEC
Q 002389 831 YSASSSVEGSNIKEWRRHR--KP-QISIAPEKGTTIQAMAVVEDF------IYLNYNSSASSLQIWLR 889 (929)
Q Consensus 831 ~~~s~S~dDgtI~IWDl~~--~~-~i~~l~~h~~~V~slafSpdg------~~LaSgS~DG~I~IWdl 889 (929)
+++.++ ....|.+|-... .+ ....-..|...|.+|+|-++. .++++++-.|.+.+|++
T Consensus 179 lIAVSs-Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSS-NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEec-CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 555544 556777765432 21 111122366789999997643 27888999999999887
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=62.16 E-value=2.7e+02 Score=31.41 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=57.0
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
...+..+...+++.+.+... .|.+..-....+. -.....+....++++.+.++++.++.| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~--~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS--RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC--CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34677888888877665442 4444321112222 222223344678999999999987776 4676643234444433
Q ss_pred EEEeCC-----CCeEEEEEc-CCEEEEEECCCcEE
Q 002389 896 GRISAG-----SKITSLLTA-NDIVLCGTETGLIK 924 (929)
Q Consensus 896 ~tl~~h-----~~Vtsvs~d-g~~LaSgs~DG~I~ 924 (929)
.....+ ..+.++.+. ...++.++.+|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence 322222 236666665 22455555667554
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=61.44 E-value=22 Score=27.66 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=25.4
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCcEEEEECCC
Q 002389 861 TTIQAMAVVEDF---IYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 861 ~~V~slafSpdg---~~LaSgS~DG~I~IWdl~s 891 (929)
+.|+++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888887889999999885
No 461
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.11 E-value=2.4e+02 Score=30.45 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=97.7
Q ss_pred EeccCCCEEEEEe---cCCeEEEEeCCCceeeeccCCCeEEEEEe-CCEEEEEEC-CCcEEEEE-ccCCccceecccccc
Q 002389 739 KLDTYGKTIFAST---QGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGKIYIGCM-DSSIQELA-VSNNVEREIKAPFKS 812 (929)
Q Consensus 739 s~s~~g~~L~sgs---~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~llsgs~-Dg~I~iwD-l~tg~~~~i~~~~~~ 812 (929)
+++++++.++... ....++++...+..........+..-.|. ++.+++... +....++. ...+........
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~--- 106 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD--- 106 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec---
Confidence 5788888777766 33477777766555554444566666776 677666543 44445553 333333222111
Q ss_pred cccCCCCeEEEEEcCCceEEEEEec--CCCeEEEEEC---CCC------CeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRR---HRK------PQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~--dDgtI~IWDl---~~~------~~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
+......|..+.+++++...+-... +++.+.+--+ ..+ ............+.+++|.+++.+++.+...
T Consensus 107 ~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 107 WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 1111128999999999987655442 3456665542 122 1122222335689999999999988776644
Q ss_pred Cc-EEE-EECCCCcEEEEE-eC--CCCeEEEEEcCCEEEEEECCCcEE
Q 002389 882 SS-LQI-WLRGTQQKVGRI-SA--GSKITSLLTANDIVLCGTETGLIK 924 (929)
Q Consensus 882 G~-I~I-Wdl~sg~~i~tl-~~--h~~Vtsvs~dg~~LaSgs~DG~I~ 924 (929)
+. +.. ... .|.....+ .. ..++.++.-+...++ +.+++.+.
T Consensus 187 ~~~~~~~v~~-dG~~~~~l~~~~~~~~v~a~~~~~~~~~-~t~~~~~~ 232 (253)
T PF10647_consen 187 GGPVVRLVSV-DGGPSTPLPSVNLGVPVVAVAASPSTVY-VTDDGGVL 232 (253)
T ss_pred CCceeEEEEc-cCCcccccCCCCCCcceEEeeCCCcEEE-EECCCcEE
Confidence 43 333 333 22222222 11 123555555555544 34444443
No 462
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=61.06 E-value=56 Score=40.39 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=109.3
Q ss_pred eccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcc----hhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHHH
Q 002389 149 YDMLQDVILEQLLTAISASKEETVIRASVSILTTIILAN----ESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIY 220 (929)
Q Consensus 149 ~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~----~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~~ 220 (929)
.+|-+|.||+=.+--|--|+++.++|++.=+|.-+-..+ +.+++.++++.+.+.+++.+|+.. |. .++.+++
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 458899999988888889999999999988877665544 577888899999999999999984 44 5555555
Q ss_pred h--cCCCchhhhhccchhHHHHHHhccccccCcccccccCch---hhHHHHHHHHHhccccccchhhhhhhchhhhHhHH
Q 002389 221 L--IKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP---AASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGL 295 (929)
Q Consensus 221 l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 295 (929)
= +++...++..-.-+|-|++-|-.++.. + ..+. .+..+.|-.++. .|..+++.+...+++..|
T Consensus 592 Nls~d~rnk~ligk~a~~~lv~~Lp~~~~~--~-----~~sedtv~~vc~tl~niv~-----~~~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 592 NLSRDIRNKELIGKYAIPDLVRCLPGSGPS--T-----SLSEDTVRAVCHTLNNIVR-----KNVLNAKDLLEIKGIPKL 659 (717)
T ss_pred hhccCchhhhhhhcchHHHHHHhCcCCCCC--c-----CchHHHHHHHHHhHHHHHH-----HhHHHHHHHHhccChHHH
Confidence 3 578888888889999999999876641 0 1111 223334444433 456788888888888888
Q ss_pred HHHhhccChHHHHHHHHHHH
Q 002389 296 LDVARHQNLEELISLATILV 315 (929)
Q Consensus 296 ~~~~~~~~~~e~~~~~~~l~ 315 (929)
+.-...-.-++-..||+.++
T Consensus 660 ~~I~~s~~S~k~~kaAs~vL 679 (717)
T KOG1048|consen 660 RLISKSQHSPKEFKAASSVL 679 (717)
T ss_pred HHHhcccCCHHHHHHHHHHH
Confidence 65444323323334444444
No 463
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.32 E-value=45 Score=42.83 Aligned_cols=91 Identities=7% Similarity=-0.109 Sum_probs=56.0
Q ss_pred EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q 002389 821 NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 821 ~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~ 900 (929)
..+.+.|........+..|+.|++..+........-..-+...++++|+|.|+.++.|-..|++.-|.. .++....+.+
T Consensus 159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~ 237 (1405)
T KOG3630|consen 159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPE 237 (1405)
T ss_pred ccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccC
Confidence 344455543332223335677777665433221111234457899999999999999999999988864 3344444433
Q ss_pred C-----CCeEEEEEcCC
Q 002389 901 G-----SKITSLLTAND 912 (929)
Q Consensus 901 h-----~~Vtsvs~dg~ 912 (929)
. ..|.+|.|-+.
T Consensus 238 Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 238 PPVEENYRVLSVTWLST 254 (1405)
T ss_pred CCcCCCcceeEEEEecc
Confidence 2 45999998744
No 464
>PRK13684 Ycf48-like protein; Provisional
Probab=59.87 E-value=3e+02 Score=31.10 Aligned_cols=146 Identities=10% Similarity=-0.009 Sum_probs=79.4
Q ss_pred CCeEEEEEe-CCEEEEEECCCcEEEEEccCCc-cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 002389 772 KGIKSMSVV-QGKIYIGCMDSSIQELAVSNNV-EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 849 (929)
Q Consensus 772 ~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~-~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~ 849 (929)
..+..+.+. ++.++..+..|.+..-.-..++ -.... ......++.+.+.+++...+.. .+|.+.+=..+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~------~~~~~~l~~i~~~~~g~~~~vg--~~G~~~~~s~d~ 244 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQ------RNSSRRLQSMGFQPDGNLWMLA--RGGQIRFNDPDD 244 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEee------CCCcccceeeeEcCCCCEEEEe--cCCEEEEccCCC
Confidence 346777775 6667777777765432111111 11111 1224567777777766554433 345554323444
Q ss_pred CCeEEEecC----CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--C--CCeEEEEE-cCCEEEEEECC
Q 002389 850 KPQISIAPE----KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA--G--SKITSLLT-ANDIVLCGTET 920 (929)
Q Consensus 850 ~~~i~~l~~----h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~--h--~~Vtsvs~-dg~~LaSgs~D 920 (929)
+..-+.... ....+.++.+.|++..+++| .+|.+. .....|+.-..... + ...+.+.+ +++..+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 433222111 12357889999988876665 577555 44555554444332 1 23555554 46667778888
Q ss_pred CcEEEee
Q 002389 921 GLIKGWI 927 (929)
Q Consensus 921 G~I~IWd 927 (929)
|.|--|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 9888775
No 465
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=59.50 E-value=2.6e+02 Score=30.32 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=90.7
Q ss_pred cCCCeEE--eccCCCEEEEE-ecCCeEEEEeCCCcee-eec--cCCCeEEEEEe-CCEEEEEE-CCCcEEEEEccCCccc
Q 002389 733 TKEPIRK--LDTYGKTIFAS-TQGHRMKVIDSSRTLK-DIY--RSKGIKSMSVV-QGKIYIGC-MDSSIQELAVSNNVER 804 (929)
Q Consensus 733 h~~~V~s--~s~~g~~L~sg-s~Dg~V~IWDl~~~~~-~l~--~~~~V~sla~s-dg~llsgs-~Dg~I~iwDl~tg~~~ 804 (929)
....+.. +.++.+.+++. ...+.|..++.++... .+. +....-.+++. ++.++... .++.+.++++......
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3344554 45666655555 4556887888774332 222 23457788887 67766655 4888999988442211
Q ss_pred -ee---c-ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC---CCeE--EE------ecCCCCCeEEEEE
Q 002389 805 -EI---K-APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR---KPQI--SI------APEKGTTIQAMAV 868 (929)
Q Consensus 805 -~i---~-~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~---~~~i--~~------l~~h~~~V~slaf 868 (929)
.. . ........++..+-.+++.+........- +.....+|..+. .... .. .......+.++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 00 0 00001112334456666665432222222 333344444332 1111 11 1123346889999
Q ss_pred ecC-CCEEEEEeCCCcEEEEECCCCcEEEEEeCCC----------CeEEEEEcCC-EEEEEECCCcEEEe
Q 002389 869 VED-FIYLNYNSSASSLQIWLRGTQQKVGRISAGS----------KITSLLTAND-IVLCGTETGLIKGW 926 (929)
Q Consensus 869 Spd-g~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~----------~Vtsvs~dg~-~LaSgs~DG~I~IW 926 (929)
+|. |.+++-...+..|..+| .+|+.+..+.-.. .--.|+++++ .|+..+.-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 985 56667777888999999 6778766655321 2556888732 56666677766665
No 466
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=58.56 E-value=3.9e+02 Score=31.97 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=112.8
Q ss_pred CCEEEEEECCCeEEEEECCCCCee-EEEEeccC-CCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeEEEEEEeccCC
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVKEH-RKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEVIATKE 735 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~-~i~~l~gH-~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~ 735 (929)
+..++-+..+|.+..-.+...... .+..+ +. ....+++++..+| .+|+.||.-|.=.++.+.............-+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~ 300 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWG 300 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcC
Confidence 347888999999988877653311 12222 32 4556677776665 46777776555455555555555555556667
Q ss_pred CeEEecc------CCC------EEEEEe---cCCeEEEEeCCCcee----eecc---CCCeEEEEEeC--CEEEEEECCC
Q 002389 736 PIRKLDT------YGK------TIFAST---QGHRMKVIDSSRTLK----DIYR---SKGIKSMSVVQ--GKIYIGCMDS 791 (929)
Q Consensus 736 ~V~s~s~------~g~------~L~sgs---~Dg~V~IWDl~~~~~----~l~~---~~~V~sla~sd--g~llsgs~Dg 791 (929)
||..+.. ... .+++++ .+|.+++..-.-... .... -..++.+.... +.++..+...
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 7775431 111 566664 467888886541111 1111 12233443331 3344444444
Q ss_pred cEEEEEccC---Cccc-eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEE
Q 002389 792 SIQELAVSN---NVER-EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAM 866 (929)
Q Consensus 792 ~I~iwDl~t---g~~~-~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h~~~V~sl 866 (929)
.-+++.+.. .+.. .+ .. ..+......+..-....+...-++ ...|++.+...+....... .....|.+.
T Consensus 381 ~T~vl~~~~~d~~e~~~e~-~~-~~f~~~~~Tl~~~~~~~~~ivQVt----~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 381 ETRVLQISEGDDGEEVEEV-EE-DGFDTDEPTLAAGNVGDGRIVQVT----PKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEEEEES----SSEEEEE-----TS-SSS-EEEEEEETTTEEEEEE----SSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred ceEEEEEecccCCcchhhh-hh-ccCCCCCCCeEEEEcCCCeEEEEe----cCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 555665541 1111 11 00 012222233333333222222222 2468888876666554432 233345444
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe------CCCCeEEEEE
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS------AGSKITSLLT 909 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~------~h~~Vtsvs~ 909 (929)
+. ++.+++.+-.++.+..+.+.......... ....|.|+..
T Consensus 455 ~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i 501 (504)
T PF10433_consen 455 SI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSI 501 (504)
T ss_dssp EE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE-
T ss_pred EE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEe
Confidence 44 34566666668889999877666543222 2345777654
No 467
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=58.19 E-value=2.4e+02 Score=32.14 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=111.3
Q ss_pred CchhHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhh
Q 002389 101 DAKSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSIL 180 (929)
Q Consensus 101 ~~~~~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il 180 (929)
.+..|++..++.++..|- +....+-+ ++.-+|++-+ .++-++|+-+.+.+-....|.-|
T Consensus 10 KtP~ElVr~l~e~L~~L~-~~~~~~~~-k~~eeisK~L-------------------~~mK~IL~G~~e~ep~~e~v~qL 68 (335)
T PF08569_consen 10 KTPAELVRSLREALEKLD-SKSDKKRE-KAQEEISKYL-------------------QQMKEILYGDGEPEPNPEQVAQL 68 (335)
T ss_dssp --HHHHHHHHHHHHHHHH-SS-HHHHH-HHHHHHHHHH-------------------HHHHHHHHS-SS----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-cccCcchh-hHHHHHHHHH-------------------HHHHHHhcCCCCCCCCHHHHHHH
Confidence 566788888888888885 22223344 4555555543 34445555555555444443332
Q ss_pred HhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCch
Q 002389 181 TTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP 260 (929)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 260 (929)
+ .|+.+.++++.|+..|..-+- .-+
T Consensus 69 a---------------------------------------------~Ei~~~dll~~Li~~L~~L~f----------Esr 93 (335)
T PF08569_consen 69 A---------------------------------------------QEIYRSDLLYLLIRNLPKLDF----------ESR 93 (335)
T ss_dssp H---------------------------------------------HHHHHHTHHHHHHHTGGGS-H----------HHH
T ss_pred H---------------------------------------------HHHHHhCHHHHHHHHhhhCCC----------ccc
Confidence 2 234444566666655543210 013
Q ss_pred hhHHHHHHHHHhccccccch-hhhhhhc-h-hhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccch
Q 002389 261 AASLMIIEVLVTAFDYATNN-MHLAAIN-S-PRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPL 337 (929)
Q Consensus 261 ~a~~~~~~~l~~~~~~~~~~-~~~~~~~-~-~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~ 337 (929)
+.+..+...++--. ..... ..+..|. - |.+|..|++..+ +.|=-..+..||--|++.+.-||.-+. .-....+
T Consensus 94 Kdv~~if~~llr~~-~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~-~~~f~~f 169 (335)
T PF08569_consen 94 KDVAQIFSNLLRRQ-IGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILY-SECFWKF 169 (335)
T ss_dssp HHHHHHHHHHHT---BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHT-SGGGGGH
T ss_pred ccHHHHHHHHHhhc-cCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhC-cHHHHHH
Confidence 44445555555431 11111 2233343 3 778888876555 666778888999999999999996665 5566667
Q ss_pred hhhhhcCCchhHHHHHHHHHHHhccCchhhHHHH
Q 002389 338 ACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLL 371 (929)
Q Consensus 338 ~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l 371 (929)
.+..+...=...+.|+.-|.|||.-++..+-+||
T Consensus 170 f~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl 203 (335)
T PF08569_consen 170 FKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFL 203 (335)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHH
Confidence 7777777777888899999999998875555554
No 468
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=57.73 E-value=1.4e+02 Score=35.30 Aligned_cols=138 Identities=9% Similarity=0.011 Sum_probs=78.5
Q ss_pred CCCCEE-EEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCC-------CEEEEEecCCeEEEEeCC--C-ceee--
Q 002389 701 EPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYG-------KTIFASTQGHRMKVIDSS--R-TLKD-- 767 (929)
Q Consensus 701 pdg~~L-aSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g-------~~L~sgs~Dg~V~IWDl~--~-~~~~-- 767 (929)
.|...| ..|+....++-.|+..|+.+..... +...+..+.|.. ..-++|-.+..|.-.|.+ + .+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~-~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeec-CCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344443 3555566677777877775443333 333345444432 123344445555555554 1 1111
Q ss_pred ---eccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 002389 768 ---IYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 843 (929)
Q Consensus 768 ---l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~ 843 (929)
+.......|.... +|.+++++..|-|++||--.-..++.. .+-+..|..+....++.++++.+ ...+-
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal------P~lG~aIk~idvta~Gk~ilaTC--k~yll 627 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL------PGLGDAIKHIDVTANGKHILATC--KNYLL 627 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC------cccccceeeeEeecCCcEEEEee--cceEE
Confidence 1112234444444 899999999999999997654333332 23477888888888888877765 34566
Q ss_pred EEEC
Q 002389 844 EWRR 847 (929)
Q Consensus 844 IWDl 847 (929)
+-|.
T Consensus 628 L~d~ 631 (776)
T COG5167 628 LTDV 631 (776)
T ss_pred EEec
Confidence 6664
No 469
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=57.61 E-value=3.3e+02 Score=30.86 Aligned_cols=56 Identities=9% Similarity=0.025 Sum_probs=32.5
Q ss_pred EEEEECCCCCeeEEEEe---ccCCCcEEEEEEcCCCCEEEE--EeCCC---eEEEEEccCCeEE
Q 002389 671 IKMWDIKKQSAMLVWDV---KEHRKAVTSFSLFEPGESLLS--GSADK---TIGVWQMVQRKLE 726 (929)
Q Consensus 671 IrIWD~~~~~~~~i~~l---~gH~~~Vtslafspdg~~LaS--gs~Dg---tIrIWDl~tg~~~ 726 (929)
+.|+|+.+++...+... ..-..-+..+.|.++++.|+. ...+. .+.+.|..++...
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~ 223 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETR 223 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCcee
Confidence 56788888764322222 234556889999999984433 33332 3556677666543
No 470
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=57.47 E-value=2.8e+02 Score=29.99 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEe--CCCcee-
Q 002389 693 AVTSFSLFEPGESLLSGS---ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVID--SSRTLK- 766 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs---~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWD--l~~~~~- 766 (929)
.+.+.+++++|+.++... ....+.++...... .....+..-.--+|++++........+....++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999866544 33455555543322 1111112111125777766555555556666663 222111
Q ss_pred -eec--cCC-CeEEEEEe-CCE-EEE---EECCCcEEEEEccCCccc---eecccccccccCCCCeEEEEEcCCceEEEE
Q 002389 767 -DIY--RSK-GIKSMSVV-QGK-IYI---GCMDSSIQELAVSNNVER---EIKAPFKSWRLQSKPINSLVVYKDWLYSAS 834 (929)
Q Consensus 767 -~l~--~~~-~V~sla~s-dg~-lls---gs~Dg~I~iwDl~tg~~~---~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s 834 (929)
... ... .|..+.++ ||. ++. ...++.+.+--+..+... ....+..........+..+.+.++..+.+.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 111 122 79999998 886 333 234677777766543322 222222222233456777777777766665
Q ss_pred EecCCCeEEE-EECCCC
Q 002389 835 SSVEGSNIKE-WRRHRK 850 (929)
Q Consensus 835 ~S~dDgtI~I-WDl~~~ 850 (929)
....++.+.. .....+
T Consensus 183 ~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGG 199 (253)
T ss_pred eCCCCCceeEEEEccCC
Confidence 5544443333 444333
No 471
>PLN02193 nitrile-specifier protein
Probab=57.28 E-value=4e+02 Score=31.68 Aligned_cols=55 Identities=4% Similarity=-0.096 Sum_probs=29.9
Q ss_pred CeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCEEEEEeCC--------------CcEEEEECCCCcE
Q 002389 840 SNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSA--------------SSLQIWLRGTQQK 894 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~l~~---h~~~V~slafSpdg~~LaSgS~D--------------G~I~IWdl~sg~~ 894 (929)
..+.+||+.+..-...... ........+..-++++++.|+.+ +.+.+||..+.+.
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 4688999887664332211 11111111223356777777753 2578888877654
No 472
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=57.10 E-value=2.6e+02 Score=31.90 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEE-ECCCC-----C---eEEEecC----CCCCeEEEEEecCCCEEEEEeCC---
Q 002389 818 KPINSLVVYKDWLYSASSSVEGSNIKEW-RRHRK-----P---QISIAPE----KGTTIQAMAVVEDFIYLNYNSSA--- 881 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dDgtI~IW-Dl~~~-----~---~i~~l~~----h~~~V~slafSpdg~~LaSgS~D--- 881 (929)
...+.+.+.++++++.. ...|..| |.+.. + ++..+.. +......++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~GlyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 72 SMVTGLAVAVGGVYVAT----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CCccceeEecCCEEEeC----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 34567777888854432 2245444 44321 1 1222322 23457789999999877655521
Q ss_pred ----------------CcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEE
Q 002389 882 ----------------SSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGT 918 (929)
Q Consensus 882 ----------------G~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs 918 (929)
|.|.-++..+++. ..+..+ ...+.++|+ |+++++-.
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555544332 223222 225567775 66665544
No 473
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=56.98 E-value=74 Score=35.18 Aligned_cols=78 Identities=10% Similarity=0.171 Sum_probs=48.4
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEEccCCeEEEEEE---eccCCCeEE
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS------ADKTIGVWQMVQRKLELIEV---IATKEPIRK 739 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs------~DgtIrIWDl~tg~~~~~~~---~~h~~~V~s 739 (929)
..|++||..+.+.. .--.+-.+.|+++.|..+.+.++.|. ....+-.||..+........ .....++..
T Consensus 16 ~~lC~yd~~~~qW~--~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS--SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEee--cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 45899999887642 11224567899999987766676664 45678889998776432222 122356665
Q ss_pred ecc---CCCEEE
Q 002389 740 LDT---YGKTIF 748 (929)
Q Consensus 740 ~s~---~g~~L~ 748 (929)
+.. ++..++
T Consensus 94 ~~~~~~d~~~~~ 105 (281)
T PF12768_consen 94 LTFISNDGSNFW 105 (281)
T ss_pred EEeeccCCceEE
Confidence 543 444444
No 474
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=56.94 E-value=4.7e+02 Score=32.48 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe--ccCCCe------EEec--cCCCEEEEEec-CC---eE
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI--ATKEPI------RKLD--TYGKTIFASTQ-GH---RM 756 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~--~h~~~V------~s~s--~~g~~L~sgs~-Dg---~V 756 (929)
.+.|-.+.|.++++.++..-.+|.|.+||...+........ .+...+ ..+. ...+++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 67799999999999999999999999999944332221111 122211 1122 22346666655 32 56
Q ss_pred EEEeCC---Cceeeec----cCCC--eEEEEEeCCEEEEEECCCcEEEEEccCCccc-eecccccccccCCCCeEEEE-E
Q 002389 757 KVIDSS---RTLKDIY----RSKG--IKSMSVVQGKIYIGCMDSSIQELAVSNNVER-EIKAPFKSWRLQSKPINSLV-V 825 (929)
Q Consensus 757 ~IWDl~---~~~~~l~----~~~~--V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~-~i~~~~~~~~~~~~~I~sl~-~ 825 (929)
+++.+. .....+. .... -..+++.+|+++.- .++.|.+|++..-+.. .+..| .........+.++. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~-~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLP-SIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEec-hhhccccccceEeecC
Confidence 677772 1222221 1112 22455568887766 7789999998764322 22111 11111112233333 3
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEe
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKPQISIA 856 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l 856 (929)
.++.+ .++. ++.|++.|+.-..++..+
T Consensus 287 s~nRv-LLs~---~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 287 SPNRV-LLSV---NNKIYLLDLKFESILSEF 313 (670)
T ss_pred CCCeE-EEEc---CCEEEEEeehhhhhhhhh
Confidence 34433 3332 578999998765554444
No 475
>PLN02153 epithiospecifier protein
Probab=56.85 E-value=3.3e+02 Score=30.61 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=34.4
Q ss_pred CCEEEEEECC-------CeEEEEECCCCCeeEEEEeccCCC----cEEEEEEcCCCCEEEEEeCC-----CeEEEEEccC
Q 002389 659 KGLLCSGFSD-------GSIKMWDIKKQSAMLVWDVKEHRK----AVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQ 722 (929)
Q Consensus 659 ~~~LaSGs~D-------GtIrIWD~~~~~~~~i~~l~gH~~----~Vtslafspdg~~LaSgs~D-----gtIrIWDl~t 722 (929)
+..++.|+.+ ..+.+||..+.+...+........ ....+.+ ++..++.||.+ ..+.++|..+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4455556653 357888988765432221111010 1222222 45556666653 3577889887
Q ss_pred CeEE
Q 002389 723 RKLE 726 (929)
Q Consensus 723 g~~~ 726 (929)
.+..
T Consensus 111 ~~W~ 114 (341)
T PLN02153 111 NEWT 114 (341)
T ss_pred CEEE
Confidence 7654
No 476
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=56.42 E-value=3.6e+02 Score=30.90 Aligned_cols=52 Identities=23% Similarity=0.209 Sum_probs=30.5
Q ss_pred ecCCCEEEEEeCCC----------------------cEEEEECCCCcE--EEEEeCC-CCeEEEEEcCCEEEEEECC
Q 002389 869 VEDFIYLNYNSSAS----------------------SLQIWLRGTQQK--VGRISAG-SKITSLLTANDIVLCGTET 920 (929)
Q Consensus 869 Spdg~~LaSgS~DG----------------------~I~IWdl~sg~~--i~tl~~h-~~Vtsvs~dg~~LaSgs~D 920 (929)
..++++++.|+.+. .+.+||..+.+. +..+... ....++..++++++.||..
T Consensus 277 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 277 YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 34677888887541 345788776543 2222211 1134566788888888864
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=55.81 E-value=3.6e+02 Score=30.71 Aligned_cols=192 Identities=15% Similarity=0.093 Sum_probs=93.7
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEecc-CCCeEE-eccCCCEEEEEecCCeEEEEeCC-CceeeeccCCC----eEEE
Q 002389 705 SLLSGSADKTIGVWQMVQRKLELIEVIAT-KEPIRK-LDTYGKTIFASTQGHRMKVIDSS-RTLKDIYRSKG----IKSM 777 (929)
Q Consensus 705 ~LaSgs~DgtIrIWDl~tg~~~~~~~~~h-~~~V~s-~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~~~~~----V~sl 777 (929)
.++.+..||.|.-.|..+++......... ...+.. .......+++++.++.++.+|.. +...-...... ....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 45555778877777887776432221111 011110 11123458888999988888884 43332222111 1222
Q ss_pred EEeCCEEEEEECCCcEEEEEccCCccceec-ccc-cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 778 SVVQGKIYIGCMDSSIQELAVSNNVEREIK-APF-KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 778 a~sdg~llsgs~Dg~I~iwDl~tg~~~~i~-~~~-~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
...++.++.++.++.+.-.|..+|+..-.. .+. ........+. ...+.++....+. ++.+.-.|..++.....
T Consensus 150 v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~-~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 150 VVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSDGY-DGILYALNAEDGTLKWS 224 (370)
T ss_pred EEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecCCC-cceEEEEEccCCcEeee
Confidence 223777777778899988888887653211 000 0001111111 1222222221100 33455556666654433
Q ss_pred ecCCC----CCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 856 APEKG----TTIQAMAVVE-----DFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 856 l~~h~----~~V~slafSp-----dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
...+. ..+....... .+.-+..++.+|.+...|..+|+.+-.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 21110 0010000000 1122356667888888899999998888764
No 478
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=55.13 E-value=1.6e+02 Score=33.17 Aligned_cols=111 Identities=8% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCeEEEEEe-CCEEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcC-----CceEEEEEec------C
Q 002389 772 KGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYK-----DWLYSASSSV------E 838 (929)
Q Consensus 772 ~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~-----d~i~~~s~S~------d 838 (929)
+..+.|++. +|.++++...|.|++++ ..+.. ..+.....+......-+..+++|| ..+|+..... .
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Q ss_pred CCeEEEEECCCCC--------eEEEecC---CCCCeEEEEEecCCCEEEEEeCCCc
Q 002389 839 GSNIKEWRRHRKP--------QISIAPE---KGTTIQAMAVVEDFIYLNYNSSASS 883 (929)
Q Consensus 839 DgtI~IWDl~~~~--------~i~~l~~---h~~~V~slafSpdg~~LaSgS~DG~ 883 (929)
+..|.-|....+. ++..... ....-..|.|.|||.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
No 479
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.00 E-value=65 Score=39.97 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=94.1
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHH---hccc------cccchhh-----hhhhc-hhhhHhHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLV---TAFD------YATNNMH-----LAAIN-SPRVLCGLLD 297 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~---~~~~------~~~~~~~-----~~~~~-~~~~~~~l~~ 297 (929)
.=++.+++||++.... +++--|.||.++ +..| -++.+.. +-+.. .++.|..|+.
T Consensus 61 ~Gmk~li~vL~~D~~D-----------~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~ 129 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMD-----------PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQ 129 (970)
T ss_pred cccHHHHHHHhhccCC-----------HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHH
Confidence 4567789999875533 233334555444 3322 2333333 22222 7889999999
Q ss_pred HhhccChHHHHHHHHHHHhhhhccCcchhHHHhhc------CccchhhhhhcCCchhHHHHHHHHHHHhccCc-------
Q 002389 298 VARHQNLEELISLATILVKCIQFDGQCRKYLSEFT------AVAPLACLLQSGEKRAIMIALEFFHEILRIPR------- 364 (929)
Q Consensus 298 ~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~------~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r------- 364 (929)
.++.-|..-|..++.+|..=| +||-.=++.+ ..+.++.+|+-.----|-.||-||.||++=|-
T Consensus 130 ~~e~~DF~VR~~aIqLlsall----s~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVA 205 (970)
T KOG0946|consen 130 SLEEFDFHVRLYAIQLLSALL----SCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVA 205 (970)
T ss_pred HHHhhchhhhhHHHHHHHHHH----hcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHH
Confidence 999999999999988877554 4665444432 35678899998888889999999999999886
Q ss_pred --hhhHHHHHHhhccCchhH
Q 002389 365 --SSAIDLLQRIHKEGNINI 382 (929)
Q Consensus 365 --~~~~~~l~~~~~~~~~~~ 382 (929)
-....++.+|.+||+..-
T Consensus 206 FENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 206 FENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCC
Confidence 225678999999996654
No 480
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=54.95 E-value=20 Score=44.31 Aligned_cols=142 Identities=16% Similarity=0.215 Sum_probs=85.0
Q ss_pred CEEEEEecCCeEEEEeCC-Ccee----ee--ccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCC
Q 002389 745 KTIFASTQGHRMKVIDSS-RTLK----DI--YRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS 817 (929)
Q Consensus 745 ~~L~sgs~Dg~V~IWDl~-~~~~----~l--~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~ 817 (929)
..+..++.++.+.++.-. .... .. ..+..+.++.++.+.+..|.-||++-.+--..+..-.- .|.+......
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~-ep~~~~~~g~ 626 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDG-EPNISIPTGS 626 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCC-CCccccccCC
Confidence 356778888888888755 1111 11 12445778888777788787777776654332211111 0112223345
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002389 818 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~---h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg 892 (929)
.|+.+..+..+..+. ..||.|.++...+......... |...|+.+.+..+|-+++-.+.| .++.++.++.
T Consensus 627 lPvrsla~~ed~~wa----s~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 627 LPVRSLAFQEDFVWA----SEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred ccccchhhhhceeee----ecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence 667777766665432 2578999999776554444433 45689999999888888777644 3444455443
No 481
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=54.45 E-value=1.3e+02 Score=33.49 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcC-cchhhhhhhHHhhHhhhhcchhhhhhhhh---cCC--CchHHHHHHhhc---ch--hhHHHHHhcCC
Q 002389 156 ILEQLLTAISAS-KEETVIRASVSILTTIILANESVIEDIKK---KGL--RLSDLATALKRN---VP--EAAILIYLIKP 224 (929)
Q Consensus 156 ~i~~~~e~~~~s-~~~~v~~~~v~il~~~~~~~~~~~~~~~~---~~~--~~~~~~~~lk~~---~~--~~~vl~~l~~~ 224 (929)
...-|+..|.+. .++++++-..+++.++...++.-.+.+.. .++ -..+|.++|.++ +. -+.+|--++.-
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 334444444444 89999999999999999999866655554 222 367777777774 32 56666677665
Q ss_pred Cchhhhh--ccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHh
Q 002389 225 SPTEIKT--LELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVA 299 (929)
Q Consensus 225 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (929)
.+..... .+.++.++..+++.-..+.... ...++..++.|+..- .........++++.|.+.+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~------~~~av~~L~~LL~~~------~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSEL------QYIAVQCLQNLLRSK------EYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---------HHHHHHHHHHHTSH------HHHHHHHTHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcch------HHHHHHHHHHHhCcc------hhHHHHHhcCcHHHHHHHH
Confidence 5555554 4788999999986222101000 156677888887532 2333344688888888888
No 482
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=53.43 E-value=1.5 Score=37.97 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=39.2
Q ss_pred hhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHH-HHhh-cchhhHHHHHhcCCCch
Q 002389 170 ETVIRASVSILTTIILANESVIEDIKKKGLRLSDLAT-ALKR-NVPEAAILIYLIKPSPT 227 (929)
Q Consensus 170 ~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~-~~~~~~vl~~l~~~~~~ 227 (929)
-++.+-||.+ ..+.++|+.+|+.|++.....||+++ -|.. .+..|..|.-.|.-|..
T Consensus 11 ~~lM~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 11 GELMRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SSB-SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred CcHhhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHH
Confidence 3566778865 89999999999999999999999998 4444 45566666655544433
No 483
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=53.41 E-value=2.3e+02 Score=33.26 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=50.1
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEc--CCCCE-EEEEeCCCeEEEEEc-cCCeEEEEEEeccC--------
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF--EPGES-LLSGSADKTIGVWQM-VQRKLELIEVIATK-------- 734 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafs--pdg~~-LaSgs~DgtIrIWDl-~tg~~~~~~~~~h~-------- 734 (929)
...++.+||+.+.+......+......+..+.|. |+..+ ++.+....+|..|-- +.++......+...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4578999999998653333332222345567775 44555 666666666665543 55655433332111
Q ss_pred ------------CCeEE--eccCCCEEEEEec-CCeEEEEeCCC
Q 002389 735 ------------EPIRK--LDTYGKTIFASTQ-GHRMKVIDSSR 763 (929)
Q Consensus 735 ------------~~V~s--~s~~g~~L~sgs~-Dg~V~IWDl~~ 763 (929)
.-++. ++.+.++++.... .|.|+.||+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 11333 6788998888774 68999999983
No 484
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=53.09 E-value=80 Score=37.08 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=103.2
Q ss_pred HHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcc
Q 002389 133 EVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNV 212 (929)
Q Consensus 133 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~ 212 (929)
.+-.+|...=..+++ -.+.++.+|..+++++-.|..++|+|.++.+|--+...+... +++-.+...++.+++
T Consensus 207 ~ll~lWlLSF~~~~~-~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~-------~~~~~~~~~mv~~~l 278 (429)
T cd00256 207 SIFCIWLLTFNPHAA-EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR-------EVKKTAALQMVQCKV 278 (429)
T ss_pred HHHHHHHHhccHHHH-HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc-------chhhhHHHHHHHcCh
Confidence 566788765543322 346788999999999999999999999999988888765421 112222222333333
Q ss_pred hhhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhc-----
Q 002389 213 PEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAIN----- 287 (929)
Q Consensus 213 ~~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~----- 287 (929)
+...-.+ .-+.|.-|-.. |-+..|-+.|+..- +=+|+||+..+-+.-.+|-
T Consensus 279 ~~~l~~L-~~rk~~DedL~-edl~~L~e~L~~~~----------------------k~ltsfD~Y~~El~sg~L~WSp~H 334 (429)
T cd00256 279 LKTLQSL-EQRKYDDEDLT-DDLKFLTEELKNSV----------------------QDLSSFDEYKSELRSGRLHWSPVH 334 (429)
T ss_pred HHHHHHH-hcCCCCcHHHH-HHHHHHHHHHHHHH----------------------HHcCCHHHHHHHHhcCCccCCCCC
Confidence 3211111 11122111111 12222233332110 0123344433332222221
Q ss_pred -hhhhHhHHHHHhhccChHHHHHHHHHH----------Hhh------hhccCcchhHHHhhcCccchhhhhhcCCchhHH
Q 002389 288 -SPRVLCGLLDVARHQNLEELISLATIL----------VKC------IQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIM 350 (929)
Q Consensus 288 -~~~~~~~l~~~~~~~~~~e~~~~~~~l----------~~c------~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~ 350 (929)
++++=..=+++|+.++-+=-..++.|| +.| +|.--.-|+-+.+-=.|+-+++|+...+...|.
T Consensus 335 ~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~ 414 (429)
T cd00256 335 KSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRY 414 (429)
T ss_pred CCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHH
Confidence 233444444555555544444555555 223 333334455555555688899999999999999
Q ss_pred HHHHHHHHH
Q 002389 351 IALEFFHEI 359 (929)
Q Consensus 351 ~~~~~~~el 359 (929)
.|+.=.-.|
T Consensus 415 eAL~avQkl 423 (429)
T cd00256 415 EALLAVQKL 423 (429)
T ss_pred HHHHHHHHH
Confidence 997655444
No 485
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=53.06 E-value=2.1e+02 Score=33.33 Aligned_cols=231 Identities=18% Similarity=0.235 Sum_probs=104.2
Q ss_pred EEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC
Q 002389 662 LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-----GESLLSGSADKTIGVWQMVQRKLELIEVIATKEP 736 (929)
Q Consensus 662 LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd-----g~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~ 736 (929)
.+.++..+. ..|....... .|...|.+++.+-+ +..+..-+.-+.|-+|+..+++.........-..
T Consensus 197 ~~~~s~~~~-l~W~~q~~~~-------~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~ds 268 (465)
T KOG2714|consen 197 LVAGSSSGS-LLWKIQEEGS-------NTVKGVFSLAVSVDPLFFIGTQLVALSSVGKIGVWHAVTQQAQDVQPISSYDS 268 (465)
T ss_pred ccceeecce-eeEeeccCCC-------cceEEEEeecccccchhhhhhhhhhccccccccccchhhhceeeeeeccCccc
Confidence 334444455 6776654321 23344555444333 2334455667889999998875433332211111
Q ss_pred e-E-----EeccCCCEEEEE------ecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccc
Q 002389 737 I-R-----KLDTYGKTIFAS------TQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVER 804 (929)
Q Consensus 737 V-~-----s~s~~g~~L~sg------s~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~ 804 (929)
. . ++...+.++.+. ..++.|.+||.+... +++.|. .+..|...+.+++-+.......
T Consensus 269 ag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n---------~~~~W~--~i~~gt~~~~vrv~~~~~~~~~ 337 (465)
T KOG2714|consen 269 AGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN---------TSGNWI--EIAYGTSSGEVRVIDQHPETVG 337 (465)
T ss_pred cCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC---------ccceEE--EecCCccccceEeeeccccccC
Confidence 1 0 111222222222 345677788776322 111111 1233445555666554331110
Q ss_pred eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 002389 805 EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASS 883 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~ 883 (929)
........+..|....-.+....+++.++.|.....+ ...+..+. .+.. ..+.++--..|+.
T Consensus 338 ----------~~~~l~~~f~~~~~~L~~idv~~~~~~~~~~~~tr~rGm~s~~pg~-~~~~------s~k~l~Le~~~~~ 400 (465)
T KOG2714|consen 338 ----------VGPCLFQTFEVHGSPLGLIDVCSDGGHVRVWNSTRFRGMISTQPGS-TPEA------SFKKLALEEGDEF 400 (465)
T ss_pred ----------CCCeEEEEEEecCCCcceeehhhhCCcceEEeecccccccccCCCC-Cccc------ccceeeehhcccc
Confidence 0011223333333322234444467888999865433 22222221 1111 1122222222333
Q ss_pred EEEEECCC----------CcEEEEEeCC--CCeEEEEEcCC-EEEEEECCCcEEEeec
Q 002389 884 LQIWLRGT----------QQKVGRISAG--SKITSLLTAND-IVLCGTETGLIKGWIP 928 (929)
Q Consensus 884 I~IWdl~s----------g~~i~tl~~h--~~Vtsvs~dg~-~LaSgs~DG~I~IWdi 928 (929)
...|.-+. .-.+.++... +.|..++..|+ ++++-+.+..|.+|..
T Consensus 401 ~s~~~gNd~~~~gd~~d~~vfi~Kl~~s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~ 458 (465)
T KOG2714|consen 401 SSMSSGNDSGPVGDGDDQQVFIQKLVPSAGGLIVRLSSGGDRLFVVRSVESPVTVWEV 458 (465)
T ss_pred ceeeecccccccCCchhhhhhhhhhccccCCcEEEEecCCeeEEEEEeccCceeEEEe
Confidence 33432111 1112333322 34888888876 5567777888999974
No 486
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=52.74 E-value=5.9e+02 Score=33.06 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=74.1
Q ss_pred hHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHH-------------
Q 002389 293 CGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEI------------- 359 (929)
Q Consensus 293 ~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el------------- 359 (929)
..|+..++..+.+-|..|+.-|-.. + ...+++.+|...+...|..|..=|..+
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~---~-----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ 782 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSV---D-----------DVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRA 782 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcc---c-----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 4556677777777788777776642 1 134567777777777777776655544
Q ss_pred -hccC----chhhHHHHHHhhccCchhH-HHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHh
Q 002389 360 -LRIP----RSSAIDLLQRIHKEGNINI-LHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVA 433 (929)
Q Consensus 360 -~~l~----r~~~~~~l~~~~~~~~~~~-mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~ 433 (929)
++=+ |.++..-|..+ |.-.. -..++..|+...+.=|--+|.-|=. +--+||++.|+.+|+
T Consensus 783 ll~D~d~~VR~aA~~aLg~~---g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~-----------l~~~~a~~~L~~~L~ 848 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAEL---GCPPDDVAAATAALRASAWQVRQGAARALAG-----------AAADVAVPALVEALT 848 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhc---CCcchhHHHHHHHhcCCChHHHHHHHHHHHh-----------ccccchHHHHHHHhc
Confidence 2111 11122222222 21111 1223344444333333333333311 123677788888886
Q ss_pred ccCChhhhHHHHHHHHhcCccccccCchhhHHHH
Q 002389 434 SEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWL 467 (929)
Q Consensus 434 ~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~l 467 (929)
.. +..++..|++||..+ .|+|-+..-|
T Consensus 849 D~-~~~VR~~A~~aL~~~------~~~~~a~~~L 875 (897)
T PRK13800 849 DP-HLDVRKAAVLALTRW------PGDPAARDAL 875 (897)
T ss_pred CC-CHHHHHHHHHHHhcc------CCCHHHHHHH
Confidence 44 677888777777665 4555544444
No 487
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=52.43 E-value=6.4e+02 Score=32.62 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=118.5
Q ss_pred CCCEEEEEEe--C----CEEEEEE---CCCeEEEEECCCCCee-EEEEeccCCCcEEEEE--EcCC-CCEEEEEeCCCeE
Q 002389 649 SGAVTALIYY--K----GLLCSGF---SDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFS--LFEP-GESLLSGSADKTI 715 (929)
Q Consensus 649 ~~~Vtsl~fs--~----~~LaSGs---~DGtIrIWD~~~~~~~-~i~~l~gH~~~Vtsla--fspd-g~~LaSgs~DgtI 715 (929)
=+||..++.- + +.++|++ .||++||....-+-.+ -...++| -.+++.+. +.++ ..+|+.+--+-|
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eT- 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISET- 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccce-
Confidence 3578888774 2 3677765 4899999876533211 2334555 45677777 4332 225554443433
Q ss_pred EEEEccCCeEEEEEEeccCCCeEEe---ccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe--CCEEEEEECC
Q 002389 716 GVWQMVQRKLELIEVIATKEPIRKL---DTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGKIYIGCMD 790 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~~~V~s~---s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s--dg~llsgs~D 790 (929)
++..+.. +.+.....+......++ ...++.++-.+ .+.|++++-.+....+.....++..... ..+++.++.+
T Consensus 431 rvl~i~~-e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~ 508 (1096)
T KOG1897|consen 431 RVLNISE-EVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGG 508 (1096)
T ss_pred EEEEEcc-ceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCc
Confidence 5666643 33333333333222221 22334433333 2457777766444444444444433333 4457777777
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCC--------ceEEEEEecCCCeEEEEECCCCCeEE-E-ecCC-
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD--------WLYSASSSVEGSNIKEWRRHRKPQIS-I-APEK- 859 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d--------~i~~~s~S~dDgtI~IWDl~~~~~i~-~-l~~h- 859 (929)
+.+...++..+....... ..-...+.++.++|- ......|+ +-.+.+.-........ . +.+.
T Consensus 509 ~~l~y~~i~~~~l~e~~~-----~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws--~~~~~l~~~pd~~~~~~~~l~~~~ 581 (1096)
T KOG1897|consen 509 LALFYLEIEDGGLREVSH-----KEFEYEVACLDISPLGDAPNKSRLLAVGLWS--DISMILTFLPDLILITHEQLSGEI 581 (1096)
T ss_pred cEEEEEEeeccceeeeee-----heecceeEEEecccCCCCCCcceEEEEEeec--ceEEEEEECCCcceeeeeccCCCc
Confidence 777777776654222210 111456777777643 11222332 2233333233332222 1 1111
Q ss_pred -CCCeEEEEEecCCCEEEEEeCCCcEEEEE--CCCCcE
Q 002389 860 -GTTIQAMAVVEDFIYLNYNSSASSLQIWL--RGTQQK 894 (929)
Q Consensus 860 -~~~V~slafSpdg~~LaSgS~DG~I~IWd--l~sg~~ 894 (929)
...|.-..|-.|..||.++..||.+..|- ..+|+.
T Consensus 582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 582 IPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 12344445556789999999999987764 455443
No 488
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=51.74 E-value=7.1e+02 Score=32.96 Aligned_cols=137 Identities=16% Similarity=0.227 Sum_probs=86.9
Q ss_pred EEEEEEC---------CCeEEEEECCC-----CCee---EEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-
Q 002389 661 LLCSGFS---------DGSIKMWDIKK-----QSAM---LVWD--VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM- 720 (929)
Q Consensus 661 ~LaSGs~---------DGtIrIWD~~~-----~~~~---~i~~--l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl- 720 (929)
+|+.|.. -|.+.|+|+-. +++. .+.. .+..+++|..++= -+| +|++|. .-.|.||++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~-GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQ-GQKIIVRKLD 1124 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEcc-CcEEEEEEec
Confidence 7887753 38999999742 2111 1222 2456788887763 244 566655 456899999
Q ss_pred cCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeec--c----CCCeEEEEEe-CCE---EEEEECC
Q 002389 721 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY--R----SKGIKSMSVV-QGK---IYIGCMD 790 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~--~----~~~V~sla~s-dg~---llsgs~D 790 (929)
+.+.+......+..-.+.++..-.++++.|.--..|.+........++. . .-.+.+..|- +|. ++++..+
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~ 1204 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDAD 1204 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCC
Confidence 5555555555555556667777788888887777777766654333322 1 2236677774 443 7778889
Q ss_pred CcEEEEEccC
Q 002389 791 SSIQELAVSN 800 (929)
Q Consensus 791 g~I~iwDl~t 800 (929)
++|++|-..-
T Consensus 1205 rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1205 RNIHVYMYAP 1214 (1366)
T ss_pred CcEEEEEeCC
Confidence 9999987654
No 489
>PRK10115 protease 2; Provisional
Probab=50.87 E-value=6e+02 Score=31.88 Aligned_cols=196 Identities=8% Similarity=0.051 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEE-----EEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeee
Q 002389 694 VTSFSLFEPGESLL-----SGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDI 768 (929)
Q Consensus 694 Vtslafspdg~~La-----Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l 768 (929)
+..+.|+|||++|+ .|+...+|++-|+.+|........+.+ ...+|.++++.++....+.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~-------------- 193 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHP-------------- 193 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecC--------------
Q ss_pred ccCCCeEEEEEeCCEEEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEE---cCCceEEEEEecCCCeEEE
Q 002389 769 YRSKGIKSMSVVQGKIYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV---YKDWLYSASSSVEGSNIKE 844 (929)
Q Consensus 769 ~~~~~V~sla~sdg~llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~---~~d~i~~~s~S~dDgtI~I 844 (929)
. .....|+.+++.++..... .++............ ........+.+..++.+.+
T Consensus 194 ------------------~~~~~~~v~~h~lgt~~~~d~----lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l 251 (686)
T PRK10115 194 ------------------VTLLPYQVWRHTIGTPASQDE----LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLL 251 (686)
T ss_pred ------------------CCCCCCEEEEEECCCChhHCe----EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEE
Q ss_pred EE--CCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--cEEEEEeCCCC---eEEEEEcCC-EEEE
Q 002389 845 WR--RHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ--QKVGRISAGSK---ITSLLTAND-IVLC 916 (929)
Q Consensus 845 WD--l~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg--~~i~tl~~h~~---Vtsvs~dg~-~LaS 916 (929)
++ ...+...............+.-..+.-++.+-.....-++....-. .....+..+.. |..+.+.++ ++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~ 331 (686)
T PRK10115 252 LDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVE 331 (686)
T ss_pred EECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEE
Q ss_pred EECCCcEEEe
Q 002389 917 GTETGLIKGW 926 (929)
Q Consensus 917 gs~DG~I~IW 926 (929)
...+|.-++|
T Consensus 332 ~~~~g~~~l~ 341 (686)
T PRK10115 332 ERQRGLTSLR 341 (686)
T ss_pred EEeCCEEEEE
No 490
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=50.80 E-value=91 Score=36.87 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=62.6
Q ss_pred CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC
Q 002389 781 QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG 860 (929)
Q Consensus 781 dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~ 860 (929)
+.+-++|-.+..|.-.|.+-...+..-...+-+.+ .....+.....++ +++..| ..|-|++||.-+......+++-+
T Consensus 527 ~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn~Fss~~tTesG-yIa~as-~kGDirLyDRig~rAKtalP~lG 603 (776)
T COG5167 527 DEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KNKFSSGMTTESG-YIAAAS-RKGDIRLYDRIGKRAKTALPGLG 603 (776)
T ss_pred ccceEEeecccceEEecccccCCceeeeeehhccc-cccccccccccCc-eEEEec-CCCceeeehhhcchhhhcCcccc
Confidence 34455566777777777654322111101111111 1122222223333 334444 67899999987766667778888
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 861 TTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
..|..+..+.+|+++++.+ ...+.+-|+
T Consensus 604 ~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 604 DAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred cceeeeEeecCCcEEEEee-cceEEEEec
Confidence 8999999999999987776 456666663
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.43 E-value=1.3e+02 Score=33.39 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=48.8
Q ss_pred CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe------CCCcEEEEECCCCcEEEEEeC------CCCeEEE
Q 002389 840 SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS------SASSLQIWLRGTQQKVGRISA------GSKITSL 907 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS------~DG~I~IWdl~sg~~i~tl~~------h~~Vtsv 907 (929)
..|.+||..+.+-...-.+-.+.|+++.|..+.+.++.|. ....+..||..+... ..+.+ .++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3689999888776555555667899999997778887775 356788899877643 23333 2457777
Q ss_pred EE
Q 002389 908 LT 909 (929)
Q Consensus 908 s~ 909 (929)
.+
T Consensus 95 ~~ 96 (281)
T PF12768_consen 95 TF 96 (281)
T ss_pred Ee
Confidence 76
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.41 E-value=2.8e+02 Score=36.35 Aligned_cols=30 Identities=10% Similarity=0.136 Sum_probs=25.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
.....++|+|....++.|..+|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345667899999999999999999998754
No 493
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=50.41 E-value=4.1e+02 Score=29.83 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=39.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC---eEEEE--------EcCCEEEEEECCCcEEEeec
Q 002389 871 DFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK---ITSLL--------TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~---Vtsvs--------~dg~~LaSgs~DG~I~IWdi 928 (929)
+++.=+.|..-|.|-+||. +|+.++++...+. -+.++ ++|.+|+---.||+|..||+
T Consensus 211 ~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 211 DRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred cccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 3333344555689999998 6788888865543 34444 24778887777999999986
No 494
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=50.08 E-value=4e+02 Score=29.60 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=48.1
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCeEE--EEEEeccCCCe---EEeccCCCEEEEEec-----CCeEEEEeCCCce-
Q 002389 702 PGESLLSGSAD-----KTIGVWQMVQRKLE--LIEVIATKEPI---RKLDTYGKTIFASTQ-----GHRMKVIDSSRTL- 765 (929)
Q Consensus 702 dg~~LaSgs~D-----gtIrIWDl~tg~~~--~~~~~~h~~~V---~s~s~~g~~L~sgs~-----Dg~V~IWDl~~~~- 765 (929)
++..++.|+.+ ..+..+|+.+.+.. .........+. .+...++...+.|+. ...+..||.....
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 45556667654 35666777665531 11111111111 112234444445543 2467888876322
Q ss_pred eeec---cCCCeE-EEEEeCCEEE-EEECCC----cEEEEEccCCccce
Q 002389 766 KDIY---RSKGIK-SMSVVQGKIY-IGCMDS----SIQELAVSNNVERE 805 (929)
Q Consensus 766 ~~l~---~~~~V~-sla~sdg~ll-sgs~Dg----~I~iwDl~tg~~~~ 805 (929)
..+. ...... +++..+++++ .|+.++ .+..||..+++-..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 1121 111112 2333477744 466543 35678887755433
No 495
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.98 E-value=5e+02 Score=30.67 Aligned_cols=109 Identities=9% Similarity=0.030 Sum_probs=60.5
Q ss_pred EEEEEeC-CEEEEEECCCeEEEEECCCCCeeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 002389 653 TALIYYK-GLLCSGFSDGSIKMWDIKKQSAMLVWDV-KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 653 tsl~fs~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l-~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
+.+-|+| +..+.+-..|.+.=|-++.........+ ....++|.++.|++|++.|+.--.|++|.+.+....+......
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3455552 2333333344555666655433222222 2456799999999999999999999999999984433221111
Q ss_pred ecc---CCCeEEecc-CCCEEEEEecCCeEEEEeCC
Q 002389 731 IAT---KEPIRKLDT-YGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 731 ~~h---~~~V~s~s~-~g~~L~sgs~Dg~V~IWDl~ 762 (929)
..+ ...|..|.+ +...++..+..| +-+|...
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL 140 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc
Confidence 111 223555443 334455544433 5555544
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=49.51 E-value=34 Score=23.90 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCEEEEEEeCCEEEEEECCCeEEEEE
Q 002389 650 GAVTALIYYKGLLCSGFSDGSIKMWD 675 (929)
Q Consensus 650 ~~Vtsl~fs~~~LaSGs~DGtIrIWD 675 (929)
..|.+++..+++++.+.+-+.+|||.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 46889999999999999999999984
No 497
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=48.58 E-value=1.1e+02 Score=31.97 Aligned_cols=118 Identities=20% Similarity=0.176 Sum_probs=67.7
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhh-HhHHHHHhhccChHHHHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRV-LCGLLDVARHQNLEELISLA 311 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~e~~~~~ 311 (929)
.++|.|++.+..++.. -.++|...|+.++.... ..+.+ +..+.......+..-|..++
T Consensus 94 ~~l~~Ll~~~~~~~~~----------i~~~a~~~L~~i~~~~~-----------~~~~~~~~~l~~~~~~Kn~~vR~~~~ 152 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKF----------IREAANNALDAIIESCS-----------YSPKILLEILSQGLKSKNPQVREECA 152 (228)
T ss_dssp HHHHHHHHGGG---HH----------HHHHHHHHHHHHHTTS------------H--HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHccccHH----------HHHHHHHHHHHHHHHCC-----------cHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6788888888765432 14677777777765321 02344 55666667788999999999
Q ss_pred HHHHhhhhccCcchhHHHhhc----CccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHH
Q 002389 312 TILVKCIQFDGQCRKYLSEFT----AVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLL 371 (929)
Q Consensus 312 ~~l~~c~~~d~~cr~~ia~~~----~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l 371 (929)
..|..|++.-+.....+.... =...+..++.-.+...|..|-+.|..+-..-+..+..++
T Consensus 153 ~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 153 EWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred HHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 999999998884444443322 233455677778899999998888888655554444444
No 498
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=48.21 E-value=4.4e+02 Score=29.58 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=49.9
Q ss_pred CeEEEEECCCCCeEEE-ecCCCCCeEEEEEec------CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-------CeE
Q 002389 840 SNIKEWRRHRKPQISI-APEKGTTIQAMAVVE------DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-------KIT 905 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~-l~~h~~~V~slafSp------dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-------~Vt 905 (929)
|.|-+||....-+.+. ..+.-..-+.|+..| .|.+|+---.||+|..||..+|+.+..+.... ..+
T Consensus 222 G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLW 301 (336)
T TIGR03118 222 GYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLW 301 (336)
T ss_pred ceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeE
Confidence 6888898876543332 122333556677654 57777777789999999999999998888652 267
Q ss_pred EEEEc
Q 002389 906 SLLTA 910 (929)
Q Consensus 906 svs~d 910 (929)
.++|.
T Consensus 302 gL~fG 306 (336)
T TIGR03118 302 SLTFG 306 (336)
T ss_pred EeeeC
Confidence 78874
No 499
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.60 E-value=1.4e+02 Score=37.62 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=46.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECC---------CCcE---EEEEeC-------C--CCeEEEEEc-----CCEEE
Q 002389 862 TIQAMAVVEDFIYLNYNSSASSLQIWLRG---------TQQK---VGRISA-------G--SKITSLLTA-----NDIVL 915 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS~DG~I~IWdl~---------sg~~---i~tl~~-------h--~~Vtsvs~d-----g~~La 915 (929)
.|..+.++|+|++++-.|..|...+.=.. .|+. .+++.- + ..|..+.|+ +.+|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 68889999999999998877655443211 1222 122221 1 237788887 45999
Q ss_pred EEECCCcEEEeec
Q 002389 916 CGTETGLIKGWIP 928 (929)
Q Consensus 916 Sgs~DG~I~IWdi 928 (929)
.=++|+++|+||+
T Consensus 166 vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 166 VLTSDNTLRLYDI 178 (717)
T ss_pred EEecCCEEEEEec
Confidence 9999999999996
No 500
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.98 E-value=7e+02 Score=31.52 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcc----------CCe--EEEEEEe--------ccCCCeEE--eccC---CCE
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMV----------QRK--LELIEVI--------ATKEPIRK--LDTY---GKT 746 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~----------tg~--~~~~~~~--------~h~~~V~s--~s~~---g~~ 746 (929)
-.|..+.++|+|.+|+-.|..|.+ |-.+. .|+ ..|.... .....|.. |.|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 358889999999999888876644 33331 111 1222211 11223332 4443 578
Q ss_pred EEEEecCCeEEEEeCC
Q 002389 747 IFASTQGHRMKVIDSS 762 (929)
Q Consensus 747 L~sgs~Dg~V~IWDl~ 762 (929)
+++-+.|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999986
Done!