Query 002389
Match_columns 929
No_of_seqs 800 out of 3728
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 00:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 9.2E-35 3.2E-39 321.9 42.5 279 642-928 25-319 (321)
2 1vyh_C Platelet-activating fac 100.0 7.8E-35 2.7E-39 333.3 38.8 272 647-928 106-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 1.2E-32 4.2E-37 306.5 43.3 273 646-927 52-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 3.8E-32 1.3E-36 297.7 41.0 272 647-928 11-300 (304)
5 2hes_X YDR267CP; beta-propelle 100.0 3.9E-32 1.3E-36 301.3 39.7 276 647-928 12-326 (330)
6 3frx_A Guanine nucleotide-bind 100.0 2E-31 6.9E-36 294.2 42.3 273 646-928 14-315 (319)
7 2pbi_B Guanine nucleotide-bind 100.0 1.8E-31 6.1E-36 299.4 42.2 272 647-927 62-354 (354)
8 3iz6_a 40S ribosomal protein R 100.0 2.5E-32 8.5E-37 309.0 32.1 275 646-928 63-373 (380)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-31 8.7E-36 296.7 39.5 278 646-928 12-333 (345)
10 4ery_A WD repeat-containing pr 100.0 9.5E-31 3.3E-35 285.8 42.3 274 646-928 20-310 (312)
11 1erj_A Transcriptional repress 100.0 3.1E-31 1.1E-35 301.3 39.9 277 647-928 62-387 (393)
12 2xzm_R RACK1; ribosome, transl 100.0 7.2E-31 2.5E-35 292.2 41.2 272 646-928 18-338 (343)
13 4g56_B MGC81050 protein; prote 100.0 6.9E-32 2.4E-36 303.3 32.5 275 647-928 40-341 (357)
14 4aow_A Guanine nucleotide-bind 100.0 7.5E-30 2.6E-34 279.6 43.9 273 646-928 35-335 (340)
15 4gqb_B Methylosome protein 50; 100.0 3.1E-31 1.1E-35 297.2 32.5 274 647-928 28-329 (344)
16 1nr0_A Actin interacting prote 100.0 1.4E-30 4.6E-35 313.7 39.3 274 646-928 187-609 (611)
17 1sq9_A Antiviral protein SKI8; 100.0 2.4E-30 8.3E-35 290.7 37.8 280 642-928 9-393 (397)
18 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-29 5.4E-34 273.3 40.1 269 646-928 15-294 (313)
19 4gga_A P55CDC, cell division c 100.0 1.7E-29 5.9E-34 289.0 40.9 274 651-929 107-394 (420)
20 2ymu_A WD-40 repeat protein; u 100.0 1.5E-29 5.3E-34 299.2 41.7 268 645-927 299-577 (577)
21 3zwl_B Eukaryotic translation 100.0 3.3E-29 1.1E-33 276.4 41.0 270 647-928 30-344 (369)
22 4ggc_A P55CDC, cell division c 100.0 5E-29 1.7E-33 270.4 41.0 273 652-929 28-314 (318)
23 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-29 4.3E-34 291.3 36.8 269 644-928 128-412 (435)
24 3dm0_A Maltose-binding peripla 100.0 4.2E-29 1.4E-33 304.8 42.6 273 646-928 379-691 (694)
25 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-29 4.8E-34 281.1 34.7 281 646-928 5-359 (372)
26 1gxr_A ESG1, transducin-like e 100.0 1E-28 3.4E-33 269.4 39.7 273 647-929 49-336 (337)
27 1nr0_A Actin interacting prote 100.0 4.2E-29 1.4E-33 300.7 39.8 272 647-928 16-353 (611)
28 3i2n_A WD repeat-containing pr 100.0 1.4E-29 4.7E-34 279.1 32.5 274 646-928 15-351 (357)
29 3mmy_A MRNA export factor; mRN 100.0 9.1E-29 3.1E-33 272.8 35.6 277 644-927 34-343 (368)
30 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-28 1.5E-32 278.8 42.0 267 646-928 115-389 (445)
31 1yfq_A Cell cycle arrest prote 100.0 1.7E-28 5.9E-33 269.4 36.8 273 642-922 4-315 (342)
32 3v7d_B Cell division control p 100.0 7.1E-28 2.4E-32 277.7 43.5 268 647-928 119-419 (464)
33 3ei3_B DNA damage-binding prot 100.0 1.7E-28 5.7E-33 275.7 36.5 276 646-928 70-380 (383)
34 4e54_B DNA damage-binding prot 100.0 3.2E-29 1.1E-33 288.4 31.3 276 647-928 117-428 (435)
35 3k26_A Polycomb protein EED; W 100.0 8.4E-29 2.9E-33 273.3 33.1 279 645-929 14-365 (366)
36 4gqb_B Methylosome protein 50; 100.0 1.2E-28 4.2E-33 276.2 33.9 238 647-893 80-333 (344)
37 2ymu_A WD-40 repeat protein; u 100.0 7.1E-28 2.4E-32 285.0 41.3 269 645-928 258-537 (577)
38 1r5m_A SIR4-interacting protei 100.0 3.6E-28 1.2E-32 273.5 36.8 273 646-928 42-359 (425)
39 2ynn_A Coatomer subunit beta'; 100.0 4.4E-28 1.5E-32 265.3 36.4 239 683-928 5-257 (304)
40 1r5m_A SIR4-interacting protei 100.0 4.1E-28 1.4E-32 273.0 36.9 269 647-928 106-423 (425)
41 3dwl_C Actin-related protein 2 100.0 6.5E-30 2.2E-34 285.9 22.0 241 647-890 9-280 (377)
42 1got_B GT-beta; complex (GTP-b 100.0 1.3E-27 4.4E-32 265.9 38.8 238 683-928 47-299 (340)
43 1vyh_C Platelet-activating fac 100.0 1.7E-28 5.8E-33 280.7 32.3 234 646-889 147-409 (410)
44 3gre_A Serine/threonine-protei 100.0 1.4E-28 4.8E-33 281.3 31.3 279 640-927 54-437 (437)
45 2pm7_B Protein transport prote 100.0 1.3E-27 4.5E-32 260.6 34.8 243 645-890 5-284 (297)
46 3ow8_A WD repeat-containing pr 100.0 1.2E-27 4.1E-32 264.8 34.4 236 645-890 76-320 (321)
47 4aez_A CDC20, WD repeat-contai 100.0 1.5E-27 5E-32 271.1 35.9 272 647-928 89-378 (401)
48 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-26 3.7E-31 267.1 42.8 267 646-928 156-440 (445)
49 2pm9_A Protein WEB1, protein t 100.0 7.8E-29 2.7E-33 279.8 23.3 276 647-928 65-412 (416)
50 4h5i_A Guanine nucleotide-exch 100.0 7.2E-28 2.5E-32 271.5 30.8 274 649-928 14-341 (365)
51 3v7d_B Cell division control p 100.0 8E-27 2.7E-31 268.9 39.3 268 646-926 159-459 (464)
52 2pm9_A Protein WEB1, protein t 100.0 1.2E-28 4.2E-33 278.2 22.4 278 649-928 12-335 (416)
53 4g56_B MGC81050 protein; prote 100.0 1.6E-27 5.6E-32 267.6 30.9 239 647-894 92-346 (357)
54 1pgu_A Actin interacting prote 100.0 2.5E-26 8.4E-31 272.6 40.5 280 645-928 156-612 (615)
55 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-26 4.2E-31 252.2 34.8 249 645-898 7-344 (351)
56 3iz6_a 40S ribosomal protein R 100.0 1.5E-27 5.1E-32 269.7 28.3 253 671-928 48-327 (380)
57 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-26 5.5E-31 257.8 36.2 253 645-898 57-342 (345)
58 3bg1_A Protein SEC13 homolog; 100.0 1.5E-27 5.3E-32 262.7 26.8 241 645-890 9-292 (316)
59 4aow_A Guanine nucleotide-bind 100.0 4E-26 1.4E-30 249.9 36.9 259 664-928 9-284 (340)
60 3dw8_B Serine/threonine-protei 100.0 6.4E-27 2.2E-31 267.0 31.1 274 647-927 26-443 (447)
61 3vl1_A 26S proteasome regulato 100.0 1E-26 3.4E-31 263.5 32.1 272 649-928 56-363 (420)
62 4a11_B DNA excision repair pro 100.0 6.6E-26 2.3E-30 253.9 38.5 281 645-928 39-363 (408)
63 3frx_A Guanine nucleotide-bind 100.0 5E-26 1.7E-30 250.9 36.8 238 682-928 8-265 (319)
64 1erj_A Transcriptional repress 100.0 1.7E-26 5.8E-31 262.2 33.9 241 647-892 121-390 (393)
65 3mkq_A Coatomer beta'-subunit; 100.0 4.9E-26 1.7E-30 280.6 40.8 272 647-928 11-300 (814)
66 2pbi_B Guanine nucleotide-bind 100.0 6.1E-26 2.1E-30 254.4 37.6 238 683-928 56-313 (354)
67 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-27 7.3E-32 281.2 26.8 260 662-928 176-515 (524)
68 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-26 1.1E-30 296.4 39.8 278 646-928 612-911 (1249)
69 1pgu_A Actin interacting prote 100.0 7.5E-26 2.6E-30 268.4 39.5 272 646-928 15-326 (615)
70 2pm7_B Protein transport prote 100.0 2.5E-26 8.6E-31 250.5 32.3 239 685-928 3-283 (297)
71 2xzm_R RACK1; ribosome, transl 100.0 2.5E-26 8.5E-31 255.6 32.6 237 645-892 72-341 (343)
72 3vl1_A 26S proteasome regulato 100.0 3.6E-26 1.2E-30 259.0 33.0 268 651-928 98-417 (420)
73 3jrp_A Fusion protein of prote 100.0 8.4E-26 2.9E-30 250.5 35.0 246 645-893 7-289 (379)
74 2hes_X YDR267CP; beta-propelle 99.9 9.4E-26 3.2E-30 250.0 32.8 241 682-928 5-278 (330)
75 4ery_A WD repeat-containing pr 99.9 3.7E-25 1.3E-29 241.5 36.2 235 646-890 62-311 (312)
76 3k26_A Polycomb protein EED; W 99.9 1.3E-25 4.4E-30 247.7 32.1 243 646-891 66-366 (366)
77 3bg1_A Protein SEC13 homolog; 99.9 4.1E-26 1.4E-30 251.3 26.2 239 686-928 8-291 (316)
78 2oaj_A Protein SNI1; WD40 repe 99.9 2.2E-25 7.5E-30 280.4 36.3 278 646-928 148-659 (902)
79 1gxr_A ESG1, transducin-like e 99.9 2.1E-24 7.1E-29 235.2 36.6 233 647-889 95-335 (337)
80 3f3f_A Nucleoporin SEH1; struc 99.9 1E-24 3.5E-29 237.0 33.0 242 686-928 6-335 (351)
81 4gga_A P55CDC, cell division c 99.9 2.5E-24 8.7E-29 246.1 37.7 245 646-901 144-405 (420)
82 3sfz_A APAF-1, apoptotic pepti 99.9 6.4E-25 2.2E-29 284.1 35.9 236 646-890 654-912 (1249)
83 3i2n_A WD repeat-containing pr 99.9 2.9E-25 1E-29 244.4 26.9 245 647-894 63-356 (357)
84 3jrp_A Fusion protein of prote 99.9 1.5E-24 5.2E-29 240.3 31.6 240 684-928 4-285 (379)
85 4a11_B DNA excision repair pro 99.9 3.9E-24 1.3E-28 239.5 34.8 277 646-928 96-403 (408)
86 3zwl_B Eukaryotic translation 99.9 1.2E-23 4.2E-28 231.7 37.6 245 682-928 23-302 (369)
87 4ggc_A P55CDC, cell division c 99.9 1.1E-23 3.7E-28 228.3 35.4 238 645-893 63-317 (318)
88 1p22_A F-BOX/WD-repeat protein 99.9 5.6E-24 1.9E-28 244.2 34.3 234 684-928 126-363 (435)
89 3dm0_A Maltose-binding peripla 99.9 4.1E-24 1.4E-28 260.6 34.9 240 684-928 375-630 (694)
90 3mkq_A Coatomer beta'-subunit; 99.9 6.8E-24 2.3E-28 261.5 36.6 271 647-928 53-384 (814)
91 4aez_A CDC20, WD repeat-contai 99.9 6.2E-24 2.1E-28 241.2 33.1 243 647-900 132-389 (401)
92 3odt_A Protein DOA1; ubiquitin 99.9 1.3E-23 4.6E-28 226.6 33.8 241 647-901 57-306 (313)
93 3vu4_A KMHSV2; beta-propeller 99.9 5.8E-24 2E-28 238.4 32.0 272 646-928 16-334 (355)
94 1k8k_C P40, ARP2/3 complex 41 99.9 7.5E-24 2.6E-28 234.8 32.5 238 687-928 4-272 (372)
95 3gre_A Serine/threonine-protei 99.9 4.8E-25 1.7E-29 251.9 23.6 246 673-928 47-357 (437)
96 2oaj_A Protein SNI1; WD40 repe 99.9 9.6E-24 3.3E-28 265.5 37.5 235 646-888 14-309 (902)
97 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.2E-23 1.1E-27 239.1 38.2 272 649-927 4-388 (450)
98 2aq5_A Coronin-1A; WD40 repeat 99.9 1.8E-24 6.3E-29 245.1 27.0 272 652-928 37-340 (402)
99 3jro_A Fusion protein of prote 99.9 2.3E-24 7.7E-29 266.1 29.2 244 645-891 5-285 (753)
100 1sq9_A Antiviral protein SKI8; 99.9 1.3E-23 4.4E-28 235.7 32.1 241 683-928 8-320 (397)
101 4h5i_A Guanine nucleotide-exch 99.9 2.6E-23 8.7E-28 234.3 33.9 242 645-891 69-343 (365)
102 4e54_B DNA damage-binding prot 99.9 3E-24 1E-28 246.9 23.6 247 646-895 161-434 (435)
103 3ei3_B DNA damage-binding prot 99.9 1.7E-23 5.8E-28 234.8 28.9 236 682-928 64-337 (383)
104 3dw8_B Serine/threonine-protei 99.9 1E-23 3.4E-28 240.6 27.2 237 689-928 26-371 (447)
105 3vu4_A KMHSV2; beta-propeller 99.9 5.5E-23 1.9E-27 230.4 32.3 241 673-928 3-269 (355)
106 2j04_B YDR362CP, TAU91; beta p 99.9 4.7E-24 1.6E-28 252.5 24.7 237 647-891 205-517 (524)
107 3bws_A Protein LP49; two-domai 99.9 8.2E-23 2.8E-27 232.6 33.6 268 650-928 123-430 (433)
108 3dwl_C Actin-related protein 2 99.9 1.5E-24 5.2E-29 242.2 18.9 235 687-927 7-278 (377)
109 2xyi_A Probable histone-bindin 99.9 1.1E-23 3.6E-28 242.1 26.4 241 647-928 126-408 (430)
110 1yfq_A Cell cycle arrest prote 99.9 1.1E-22 3.8E-27 223.0 32.8 234 685-928 5-280 (342)
111 1l0q_A Surface layer protein; 99.9 3.2E-22 1.1E-26 224.5 37.1 255 661-928 4-273 (391)
112 3lrv_A PRE-mRNA-splicing facto 99.9 2.9E-23 1E-27 230.5 25.3 251 659-926 48-329 (343)
113 2aq5_A Coronin-1A; WD40 repeat 99.9 4E-23 1.4E-27 234.1 25.4 244 645-894 77-345 (402)
114 3jro_A Fusion protein of prote 99.9 2.4E-23 8.2E-28 256.9 24.8 240 684-928 2-283 (753)
115 2j04_A TAU60, YPL007P, hypothe 99.9 2.9E-23 9.8E-28 243.3 21.9 258 647-928 13-295 (588)
116 3mmy_A MRNA export factor; mRN 99.9 2E-22 6.9E-27 221.9 26.3 234 646-888 83-343 (368)
117 4gq1_A NUP37; propeller, trans 99.9 4.6E-23 1.6E-27 234.3 21.1 261 647-928 87-387 (393)
118 1l0q_A Surface layer protein; 99.9 2E-20 7E-25 209.8 36.4 266 650-928 32-340 (391)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.2E-20 7.6E-25 215.4 31.7 233 691-928 4-337 (450)
120 3lrv_A PRE-mRNA-splicing facto 99.9 5.5E-21 1.9E-25 212.2 21.6 220 698-928 43-290 (343)
121 2w18_A PALB2, fancn, partner a 99.9 1.7E-19 5.7E-24 199.8 32.2 259 651-928 41-355 (356)
122 2j04_A TAU60, YPL007P, hypothe 99.9 8.7E-22 3E-26 230.8 14.3 222 646-890 49-296 (588)
123 2w18_A PALB2, fancn, partner a 99.9 4.8E-20 1.6E-24 204.2 25.9 191 668-889 156-355 (356)
124 3bws_A Protein LP49; two-domai 99.8 3.5E-19 1.2E-23 202.6 30.4 234 646-891 166-432 (433)
125 4gq1_A NUP37; propeller, trans 99.8 1.5E-19 5.3E-24 205.2 25.0 232 641-889 128-387 (393)
126 1ri6_A Putative isomerase YBHE 99.8 6.7E-18 2.3E-22 184.4 30.4 264 662-927 8-305 (343)
127 2xyi_A Probable histone-bindin 99.8 8.5E-19 2.9E-23 201.2 24.2 202 647-891 179-410 (430)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 4E-18 1.4E-22 195.4 28.2 251 647-912 115-408 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.8 9.1E-18 3.1E-22 192.4 29.2 269 649-928 62-385 (415)
130 3u4y_A Uncharacterized protein 99.8 1.2E-16 4.3E-21 174.6 34.8 262 661-928 12-302 (331)
131 2ojh_A Uncharacterized protein 99.8 9.2E-18 3.2E-22 178.1 24.5 249 664-921 17-293 (297)
132 1nir_A Nitrite reductase; hemo 99.8 3.1E-17 1E-21 195.0 31.4 257 661-928 151-456 (543)
133 1pby_B Quinohemoprotein amine 99.8 3.8E-17 1.3E-21 177.9 27.6 256 660-928 2-308 (337)
134 1nir_A Nitrite reductase; hemo 99.8 1.8E-16 6.2E-21 188.4 34.4 271 652-928 181-512 (543)
135 1ri6_A Putative isomerase YBHE 99.8 4.6E-16 1.6E-20 169.7 31.3 261 647-910 35-331 (343)
136 2ecf_A Dipeptidyl peptidase IV 99.7 6.7E-17 2.3E-21 197.5 26.3 270 649-928 36-411 (741)
137 3vgz_A Uncharacterized protein 99.7 4E-15 1.4E-19 163.5 34.6 265 649-920 40-334 (353)
138 1jmx_B Amine dehydrogenase; ox 99.7 4E-15 1.4E-19 162.9 29.7 267 655-928 5-323 (349)
139 3hfq_A Uncharacterized protein 99.7 9E-15 3.1E-19 161.5 31.8 256 667-927 14-314 (347)
140 2z3z_A Dipeptidyl aminopeptida 99.7 3.5E-15 1.2E-19 181.5 30.6 271 649-928 81-433 (706)
141 3o4h_A Acylamino-acid-releasin 99.7 7.6E-16 2.6E-20 183.4 22.9 260 649-927 21-312 (582)
142 3scy_A Hypothetical bacterial 99.7 3.1E-14 1.1E-18 158.3 34.2 265 661-927 15-334 (361)
143 1xfd_A DIP, dipeptidyl aminope 99.7 6.8E-16 2.3E-20 187.9 21.7 274 651-928 18-391 (723)
144 3hfq_A Uncharacterized protein 99.7 8.5E-15 2.9E-19 161.7 28.5 247 648-895 38-323 (347)
145 1k32_A Tricorn protease; prote 99.7 3E-15 1E-19 191.1 27.4 268 646-928 200-500 (1045)
146 3u4y_A Uncharacterized protein 99.6 3.3E-14 1.1E-18 155.3 27.0 240 648-893 39-306 (331)
147 1pby_B Quinohemoprotein amine 99.6 1.2E-14 4.1E-19 158.0 23.0 238 651-901 35-320 (337)
148 2ecf_A Dipeptidyl peptidase IV 99.6 1.4E-14 4.8E-19 177.0 25.7 264 650-927 109-456 (741)
149 2z3z_A Dipeptidyl aminopeptida 99.6 2.4E-14 8.1E-19 174.1 27.6 265 652-927 28-388 (706)
150 3vgz_A Uncharacterized protein 99.6 4.1E-13 1.4E-17 147.3 32.6 232 690-928 39-301 (353)
151 1k32_A Tricorn protease; prote 99.6 6.1E-14 2.1E-18 179.0 29.7 228 687-928 199-459 (1045)
152 2ojh_A Uncharacterized protein 99.6 2.2E-14 7.5E-19 151.9 21.2 224 647-882 39-293 (297)
153 1z68_A Fibroblast activation p 99.6 1.4E-14 4.8E-19 176.6 20.9 270 654-928 20-389 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.6 1.3E-13 4.3E-18 159.2 27.5 280 649-929 36-404 (434)
155 3o4h_A Acylamino-acid-releasin 99.6 3.8E-14 1.3E-18 168.7 21.9 225 690-928 20-274 (582)
156 3scy_A Hypothetical bacterial 99.6 1.1E-12 3.7E-17 145.8 32.3 259 648-910 48-360 (361)
157 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.2E-12 4E-17 146.7 32.5 263 661-928 4-339 (365)
158 2oit_A Nucleoporin 214KDA; NH2 99.6 2.4E-14 8.1E-19 165.3 18.4 225 669-928 23-276 (434)
159 1xfd_A DIP, dipeptidyl aminope 99.5 2.1E-13 7.2E-18 165.9 24.2 261 651-917 62-427 (723)
160 4a5s_A Dipeptidyl peptidase 4 99.5 1.6E-12 5.6E-17 159.7 24.8 271 649-927 16-395 (740)
161 1jmx_B Amine dehydrogenase; ox 99.5 1E-11 3.5E-16 135.7 27.3 227 651-901 44-335 (349)
162 3pe7_A Oligogalacturonate lyas 99.5 1.1E-11 3.8E-16 138.3 26.8 271 647-927 28-379 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.3E-11 4.6E-16 138.0 27.4 243 648-892 38-342 (365)
164 2gop_A Trilobed protease; beta 99.4 4.9E-11 1.7E-15 131.0 30.3 251 651-927 16-328 (347)
165 3azo_A Aminopeptidase; POP fam 99.4 1.7E-11 5.8E-16 147.7 28.2 273 646-926 20-363 (662)
166 2oiz_A Aromatic amine dehydrog 99.4 4.9E-11 1.7E-15 134.0 29.4 253 667-928 29-332 (361)
167 1q7f_A NHL, brain tumor CG1071 99.4 3.4E-10 1.2E-14 121.2 31.3 236 647-894 27-283 (286)
168 1q7f_A NHL, brain tumor CG1071 99.4 6.2E-10 2.1E-14 119.2 32.0 231 688-928 26-278 (286)
169 3fvz_A Peptidyl-glycine alpha- 99.4 1.8E-10 6.1E-15 127.1 27.7 236 691-928 23-320 (329)
170 2oiz_A Aromatic amine dehydrog 99.4 1.2E-10 4E-15 130.8 26.6 249 654-910 54-356 (361)
171 1z68_A Fibroblast activation p 99.4 3.8E-11 1.3E-15 146.3 24.4 270 651-928 61-441 (719)
172 3pe7_A Oligogalacturonate lyas 99.3 1.1E-10 3.7E-15 130.2 25.2 244 674-928 15-327 (388)
173 3fvz_A Peptidyl-glycine alpha- 99.3 9.7E-10 3.3E-14 121.2 32.4 235 649-890 23-321 (329)
174 2dg1_A DRP35, lactonase; beta 99.3 3.7E-10 1.3E-14 123.6 26.4 257 649-920 5-300 (333)
175 3c5m_A Oligogalacturonate lyas 99.3 1E-10 3.5E-15 130.2 21.8 265 649-927 35-379 (396)
176 4a5s_A Dipeptidyl peptidase 4 99.3 1.5E-10 5.2E-15 142.1 24.9 232 693-927 18-350 (740)
177 2z2n_A Virginiamycin B lyase; 99.3 2.4E-08 8.1E-13 106.4 38.0 269 647-928 12-293 (299)
178 3dsm_A Uncharacterized protein 99.3 2.7E-09 9.3E-14 117.8 30.2 248 650-909 44-319 (328)
179 3e5z_A Putative gluconolactona 99.2 3.8E-09 1.3E-13 113.9 28.7 233 648-894 26-289 (296)
180 3dsm_A Uncharacterized protein 99.2 2.6E-09 9E-14 117.9 27.4 247 667-928 15-300 (328)
181 3c5m_A Oligogalacturonate lyas 99.2 1.1E-09 3.6E-14 122.0 24.4 246 673-928 14-327 (396)
182 2xdw_A Prolyl endopeptidase; a 99.2 7.8E-09 2.7E-13 126.2 34.1 232 689-928 122-412 (710)
183 3e5z_A Putative gluconolactona 99.2 5.1E-09 1.7E-13 112.9 28.3 225 685-924 21-281 (296)
184 2xdw_A Prolyl endopeptidase; a 99.2 3E-09 1E-13 129.8 28.9 241 646-893 121-416 (710)
185 3azo_A Aminopeptidase; POP fam 99.2 3.8E-10 1.3E-14 135.9 20.3 233 686-927 18-320 (662)
186 2bkl_A Prolyl endopeptidase; m 99.2 1.6E-09 5.5E-14 132.0 24.9 231 689-928 118-395 (695)
187 1qks_A Cytochrome CD1 nitrite 99.2 2.2E-08 7.4E-13 119.3 33.9 259 661-928 169-475 (567)
188 2bkl_A Prolyl endopeptidase; m 99.2 1.3E-09 4.3E-14 133.0 23.8 240 646-894 117-400 (695)
189 3no2_A Uncharacterized protein 99.1 7.1E-09 2.4E-13 112.0 25.9 229 659-901 5-262 (276)
190 2qc5_A Streptogramin B lactona 99.1 2.3E-07 8E-12 98.7 37.5 266 648-928 18-298 (300)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.7E-08 5.9E-13 108.8 28.9 233 688-928 14-297 (314)
192 2gop_A Trilobed protease; beta 99.1 2.8E-08 9.7E-13 108.9 29.7 227 650-901 59-339 (347)
193 1rwi_B Serine/threonine-protei 99.1 1.7E-08 5.8E-13 106.5 25.0 227 693-928 25-262 (270)
194 1rwi_B Serine/threonine-protei 99.1 1.5E-08 5E-13 107.0 24.4 232 651-893 25-266 (270)
195 2mad_H Methylamine dehydrogena 99.1 2.4E-07 8.1E-12 104.5 35.8 246 670-928 48-348 (373)
196 2z2n_A Virginiamycin B lyase; 99.1 2.3E-07 7.7E-12 98.7 33.5 231 687-928 10-253 (299)
197 2dg1_A DRP35, lactonase; beta 99.1 9.5E-08 3.2E-12 104.3 31.1 231 647-882 42-301 (333)
198 3q7m_A Lipoprotein YFGL, BAMB; 99.1 9.2E-08 3.1E-12 106.8 30.4 259 653-928 97-376 (376)
199 1qks_A Cytochrome CD1 nitrite 99.0 2.6E-07 8.7E-12 110.1 34.5 272 650-928 197-536 (567)
200 3sjl_D Methylamine dehydrogena 99.0 1.6E-07 5.6E-12 106.0 30.8 251 668-928 58-361 (386)
201 3hrp_A Uncharacterized protein 99.0 1.7E-07 5.7E-12 107.1 29.7 230 692-928 131-408 (409)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 3.1E-07 1.1E-11 98.8 29.8 238 650-891 18-299 (314)
203 1yr2_A Prolyl oligopeptidase; 99.0 1.3E-07 4.3E-12 116.2 29.1 230 689-928 160-439 (741)
204 3no2_A Uncharacterized protein 98.9 1.9E-07 6.6E-12 100.7 25.4 209 702-917 4-230 (276)
205 2mad_H Methylamine dehydrogena 98.9 1.1E-06 3.8E-11 99.0 31.9 235 654-898 70-357 (373)
206 1xip_A Nucleoporin NUP159; bet 98.9 3.1E-08 1.1E-12 112.1 18.7 179 651-838 39-234 (388)
207 3q7m_A Lipoprotein YFGL, BAMB; 98.9 8.9E-07 3E-11 98.7 29.8 257 657-928 51-335 (376)
208 1yr2_A Prolyl oligopeptidase; 98.9 1.3E-07 4.4E-12 116.1 24.9 235 647-893 160-443 (741)
209 2qc5_A Streptogramin B lactona 98.9 3.1E-06 1.1E-10 89.9 32.5 231 688-928 16-258 (300)
210 3sjl_D Methylamine dehydrogena 98.9 5.2E-07 1.8E-11 101.9 26.9 241 655-903 83-375 (386)
211 3c75_H MADH, methylamine dehyd 98.9 7.1E-07 2.4E-11 102.3 28.3 251 669-928 99-400 (426)
212 3g4e_A Regucalcin; six bladed 98.8 2.4E-06 8.2E-11 92.4 28.5 223 649-879 12-260 (297)
213 2hz6_A Endoplasmic reticulum t 98.8 1.1E-10 3.9E-15 131.4 -7.0 253 657-927 7-276 (369)
214 3g4e_A Regucalcin; six bladed 98.7 6.4E-06 2.2E-10 89.0 29.6 211 689-911 10-250 (297)
215 1mda_H Methylamine dehydrogena 98.7 1.2E-06 4.2E-11 98.5 24.5 245 670-928 47-344 (368)
216 3iuj_A Prolyl endopeptidase; h 98.7 1.2E-06 4.3E-11 106.6 26.2 229 689-928 126-403 (693)
217 1xip_A Nucleoporin NUP159; bet 98.7 2.4E-07 8.4E-12 104.8 17.2 171 693-879 39-232 (388)
218 3dr2_A Exported gluconolactona 98.7 2.1E-06 7.3E-11 93.1 23.8 227 685-925 38-302 (305)
219 3iuj_A Prolyl endopeptidase; h 98.6 2.1E-06 7E-11 104.7 24.4 239 646-894 125-408 (693)
220 2ghs_A AGR_C_1268P; regucalcin 98.6 2.2E-05 7.7E-10 86.1 29.1 210 694-918 51-290 (326)
221 3hrp_A Uncharacterized protein 98.6 1.1E-05 3.9E-10 91.9 27.5 234 650-889 131-408 (409)
222 2ghs_A AGR_C_1268P; regucalcin 98.6 2.1E-05 7.3E-10 86.3 28.7 219 651-879 50-290 (326)
223 1kb0_A Quinohemoprotein alcoho 98.5 6.1E-06 2.1E-10 100.3 25.0 266 658-928 76-505 (677)
224 3dr2_A Exported gluconolactona 98.5 1.8E-05 6E-10 85.8 25.9 222 648-882 43-298 (305)
225 1mda_H Methylamine dehydrogena 98.5 3.2E-06 1.1E-10 95.1 19.8 240 654-910 69-365 (368)
226 1yiq_A Quinohemoprotein alcoho 98.5 1.8E-05 6.2E-10 96.4 26.5 267 658-928 69-503 (689)
227 4a2l_A BT_4663, two-component 98.5 0.00023 8E-09 87.7 36.9 270 652-928 175-478 (795)
228 3c75_H MADH, methylamine dehyd 98.4 1.6E-05 5.5E-10 91.0 23.8 238 654-898 122-409 (426)
229 1yiq_A Quinohemoprotein alcoho 98.4 4.4E-05 1.5E-09 93.0 28.3 260 655-918 117-537 (689)
230 1kb0_A Quinohemoprotein alcoho 98.4 2E-05 6.7E-10 95.9 25.0 256 655-914 124-534 (677)
231 3hxj_A Pyrrolo-quinoline quino 98.4 5E-06 1.7E-10 90.0 17.7 256 649-927 59-321 (330)
232 3hxj_A Pyrrolo-quinoline quino 98.4 1.6E-06 5.6E-11 93.9 12.9 252 655-928 25-282 (330)
233 2z6h_A Catenin beta-1, beta-ca 98.4 5E-06 1.7E-10 100.4 18.3 302 120-454 25-337 (644)
234 4a2l_A BT_4663, two-component 98.4 0.00084 2.9E-08 82.8 38.2 271 648-928 213-524 (795)
235 2hz6_A Endoplasmic reticulum t 98.3 5.4E-07 1.8E-11 101.3 7.9 189 702-906 8-207 (369)
236 1jdh_A Beta-catenin; beta-cate 98.3 6.2E-06 2.1E-10 96.1 16.9 305 117-454 25-340 (529)
237 3v9f_A Two-component system se 98.3 0.00051 1.7E-08 84.5 34.6 270 649-928 257-566 (781)
238 4hxt_A De novo protein OR329; 98.3 6.4E-06 2.2E-10 85.8 14.2 247 156-462 3-250 (252)
239 2z6g_A B-catenin; FULL-length, 98.3 1.2E-05 4.2E-10 99.3 18.5 275 153-454 190-473 (780)
240 2qe8_A Uncharacterized protein 98.2 3.5E-05 1.2E-09 85.2 19.9 250 650-923 17-314 (343)
241 1kv9_A Type II quinohemoprotei 98.1 0.00026 8.8E-09 85.9 26.1 268 657-928 64-486 (668)
242 3v9f_A Two-component system se 98.1 0.0017 5.8E-08 79.9 33.5 271 649-928 210-522 (781)
243 2qe8_A Uncharacterized protein 98.1 0.00011 3.6E-09 81.2 20.5 229 646-888 63-318 (343)
244 3ul1_B Importin subunit alpha- 98.1 9.6E-06 3.3E-10 95.2 12.4 338 110-476 59-405 (510)
245 1npe_A Nidogen, entactin; glyc 98.1 0.004 1.4E-07 65.5 30.9 231 661-901 3-248 (267)
246 1fwx_A Nitrous oxide reductase 98.1 0.00033 1.1E-08 82.6 24.3 236 661-919 103-407 (595)
247 1wa5_B Importin alpha subunit; 98.1 2.3E-05 7.8E-10 92.0 14.5 277 151-452 169-456 (530)
248 2iwa_A Glutamine cyclotransfer 98.1 0.00073 2.5E-08 72.3 24.6 205 683-891 11-237 (266)
249 2ad6_A Methanol dehydrogenase 98.1 0.001 3.5E-08 79.1 28.5 266 658-928 61-492 (571)
250 3nol_A Glutamine cyclotransfer 98.0 0.00038 1.3E-08 74.1 21.7 189 683-879 33-243 (262)
251 1w6s_A Methanol dehydrogenase 98.0 0.002 6.7E-08 77.0 30.4 267 658-928 61-501 (599)
252 3tpo_A Importin subunit alpha- 98.0 2E-05 7E-10 92.7 13.1 338 110-476 78-424 (529)
253 2jdq_A Importin alpha-1 subuni 98.0 6.4E-05 2.2E-09 85.5 16.8 277 151-452 103-389 (450)
254 4b8j_A Importin subunit alpha- 98.0 2.5E-05 8.6E-10 91.5 13.4 329 107-469 73-412 (528)
255 2jdq_A Importin alpha-1 subuni 98.0 0.00012 4E-09 83.2 18.3 316 110-453 22-347 (450)
256 4db8_A Armadillo-repeat protei 98.0 3.6E-05 1.2E-09 80.5 12.7 236 158-453 15-251 (252)
257 1wa5_B Importin alpha subunit; 97.9 0.00011 3.8E-09 86.1 16.3 313 109-452 88-411 (530)
258 1kv9_A Type II quinohemoprotei 97.9 0.002 6.9E-08 78.0 27.7 259 655-918 113-520 (668)
259 2fp8_A Strictosidine synthase; 97.9 0.0023 7.7E-08 69.6 25.5 228 692-928 19-311 (322)
260 4hxt_A De novo protein OR329; 97.9 4.5E-05 1.5E-09 79.3 11.2 199 232-453 1-199 (252)
261 2ece_A 462AA long hypothetical 97.9 0.0013 4.6E-08 75.0 23.5 218 661-879 98-399 (462)
262 4db6_A Armadillo repeat protei 97.9 7.1E-05 2.4E-09 76.1 11.5 198 233-453 12-209 (210)
263 2ad6_A Methanol dehydrogenase 97.8 0.0036 1.2E-07 74.4 27.1 246 655-903 111-506 (571)
264 3mbr_X Glutamine cyclotransfer 97.8 0.0041 1.4E-07 65.4 24.3 190 682-879 10-222 (243)
265 3tpo_A Importin subunit alpha- 97.8 0.00041 1.4E-08 81.5 18.3 276 151-451 158-447 (529)
266 1xqr_A HSPBP1 protein; armadil 97.8 7.2E-05 2.5E-09 81.5 10.6 205 233-453 28-238 (296)
267 2iwa_A Glutamine cyclotransfer 97.8 0.017 5.9E-07 61.6 28.7 197 649-849 20-237 (266)
268 1npe_A Nidogen, entactin; glyc 97.7 0.017 5.8E-07 60.7 28.0 212 651-873 37-263 (267)
269 3nok_A Glutaminyl cyclase; bet 97.7 0.0023 7.9E-08 68.1 20.6 190 683-878 45-253 (268)
270 2ece_A 462AA long hypothetical 97.7 0.0087 3E-07 68.4 26.5 213 701-918 93-399 (462)
271 4b8j_A Importin subunit alpha- 97.7 0.00031 1.1E-08 82.2 15.1 276 151-451 156-441 (528)
272 4db6_A Armadillo repeat protei 97.7 0.00018 6E-09 73.1 10.9 185 160-360 16-208 (210)
273 3ul1_B Importin subunit alpha- 97.6 0.00082 2.8E-08 78.7 17.3 326 96-451 86-428 (510)
274 1k3i_A Galactose oxidase precu 97.6 0.013 4.4E-07 70.6 28.2 260 659-919 197-530 (656)
275 2z6h_A Catenin beta-1, beta-ca 97.6 0.0011 3.9E-08 79.6 18.7 269 156-453 15-292 (644)
276 1flg_A Protein (quinoprotein e 97.6 0.028 9.6E-07 66.8 30.0 265 658-928 67-514 (582)
277 4db8_A Armadillo-repeat protei 97.5 0.0005 1.7E-08 71.7 12.3 197 233-452 12-208 (252)
278 2p4o_A Hypothetical protein; p 97.5 0.1 3.6E-06 55.9 30.7 222 650-882 32-279 (306)
279 3nol_A Glutamine cyclotransfer 97.5 0.024 8.1E-07 60.2 24.4 154 647-805 40-206 (262)
280 3mbr_X Glutamine cyclotransfer 97.5 0.062 2.1E-06 56.4 27.3 154 647-805 18-184 (243)
281 3v64_C Agrin; beta propeller, 97.4 0.16 5.6E-06 55.9 32.2 238 652-900 36-284 (349)
282 3nok_A Glutaminyl cyclase; bet 97.4 0.012 4.2E-07 62.5 21.5 154 646-805 51-215 (268)
283 3nmw_A APC variant protein; AR 97.4 0.00065 2.2E-08 75.8 12.1 204 144-361 62-292 (354)
284 2p4o_A Hypothetical protein; p 97.4 0.059 2E-06 57.9 27.5 230 683-920 24-278 (306)
285 1jdh_A Beta-catenin; beta-cate 97.4 0.0051 1.7E-07 71.3 20.2 269 156-453 18-295 (529)
286 3now_A UNC-45 protein, SD10334 97.4 0.0033 1.1E-07 77.2 18.9 317 108-454 246-611 (810)
287 3v65_B Low-density lipoprotein 97.4 0.15 5E-06 57.2 31.3 237 654-901 81-328 (386)
288 2fp8_A Strictosidine synthase; 97.4 0.018 6.1E-07 62.3 23.0 233 652-891 21-313 (322)
289 2z6g_A B-catenin; FULL-length, 97.4 0.0046 1.6E-07 76.2 20.2 246 154-454 149-429 (780)
290 1xm9_A Plakophilin 1; armadill 97.3 0.007 2.4E-07 69.7 19.6 326 110-453 4-449 (457)
291 3nmw_A APC variant protein; AR 97.3 0.0018 6.3E-08 72.2 13.5 199 154-365 126-338 (354)
292 3nmz_A APC variant protein; pr 97.2 0.0013 4.4E-08 75.9 12.3 205 144-362 178-409 (458)
293 1flg_A Protein (quinoprotein e 97.2 0.053 1.8E-06 64.4 26.2 78 839-917 465-547 (582)
294 3now_A UNC-45 protein, SD10334 97.2 0.004 1.4E-07 76.4 16.4 270 154-453 376-652 (810)
295 1k3i_A Galactose oxidase precu 97.1 0.0074 2.5E-07 72.7 17.8 228 696-928 190-495 (656)
296 3l6x_A Catenin delta-1; cateni 97.1 0.015 5E-07 68.9 19.8 267 123-452 21-337 (584)
297 3qqz_A Putative uncharacterize 97.1 0.18 6.2E-06 53.3 26.2 204 685-891 20-253 (255)
298 1xm9_A Plakophilin 1; armadill 97.1 0.012 4.3E-07 67.6 18.7 200 228-452 39-312 (457)
299 1w6s_A Methanol dehydrogenase 97.1 0.066 2.3E-06 63.8 25.1 78 839-917 452-534 (599)
300 1ijq_A LDL receptor, low-densi 96.9 0.63 2.1E-05 50.3 32.6 222 669-900 10-247 (316)
301 2xbg_A YCF48-like protein; pho 96.9 0.65 2.2E-05 50.4 32.0 265 649-927 35-319 (327)
302 1fwx_A Nitrous oxide reductase 96.9 0.0072 2.5E-07 71.2 14.5 201 701-928 99-359 (595)
303 3ott_A Two-component system se 96.8 1.3 4.3E-05 53.9 34.6 254 649-921 21-299 (758)
304 2xe4_A Oligopeptidase B; hydro 96.8 0.045 1.5E-06 67.0 21.6 201 689-926 170-394 (751)
305 3v64_C Agrin; beta propeller, 96.8 0.83 2.8E-05 50.2 29.6 222 695-927 37-272 (349)
306 3nmz_A APC variant protein; pr 96.8 0.0062 2.1E-07 70.2 12.5 198 154-364 242-453 (458)
307 3sov_A LRP-6, low-density lipo 96.7 0.99 3.4E-05 48.9 30.4 225 668-900 12-247 (318)
308 2xbg_A YCF48-like protein; pho 96.7 0.58 2E-05 50.8 26.7 230 649-888 79-319 (327)
309 3ei3_A DNA damage-binding prot 96.6 2.8 9.7E-05 53.6 36.3 265 649-928 513-871 (1158)
310 1xqr_A HSPBP1 protein; armadil 96.6 0.0099 3.4E-07 64.5 11.8 206 104-363 24-240 (296)
311 3p5b_L Low density lipoprotein 96.6 1.3 4.5E-05 49.6 33.1 230 661-901 85-330 (400)
312 2xe4_A Oligopeptidase B; hydro 96.6 0.52 1.8E-05 57.6 28.2 237 647-894 170-461 (751)
313 3ei3_A DNA damage-binding prot 96.5 1.7 5.8E-05 55.7 33.6 270 649-928 553-911 (1158)
314 3v65_B Low-density lipoprotein 96.5 1 3.4E-05 50.2 28.3 222 696-927 81-315 (386)
315 3ii7_A Kelch-like protein 7; p 96.5 0.33 1.1E-05 51.7 23.2 225 661-894 14-275 (306)
316 3p5b_L Low density lipoprotein 96.4 1.2 4.1E-05 49.9 28.3 215 649-869 111-340 (400)
317 3tc9_A Hypothetical hydrolase; 96.4 0.3 1E-05 55.6 23.4 229 693-928 138-428 (430)
318 2xn4_A Kelch-like protein 2; s 96.4 0.24 8.3E-06 52.7 21.4 227 661-894 18-279 (302)
319 4hw6_A Hypothetical protein, I 96.4 0.54 1.8E-05 53.5 25.1 227 693-928 140-431 (433)
320 1ijq_A LDL receptor, low-densi 96.4 1.4 4.9E-05 47.3 31.1 208 712-928 9-236 (316)
321 2vpj_A Kelch-like protein 12; 96.3 0.26 9E-06 52.3 20.6 219 669-894 31-281 (301)
322 3tc9_A Hypothetical hydrolase; 96.1 1.7 5.8E-05 49.2 27.5 146 651-800 138-301 (430)
323 3l6x_A Catenin delta-1; cateni 96.1 0.039 1.3E-06 65.3 14.0 308 146-477 124-493 (584)
324 3m0c_C LDL receptor, low-densi 96.1 3.9 0.00013 50.1 32.3 222 667-900 402-641 (791)
325 4hw6_A Hypothetical protein, I 96.1 1.7 5.9E-05 49.2 27.1 234 650-890 139-432 (433)
326 3tt9_A Plakophilin-2; cell adh 96.0 0.09 3.1E-06 54.8 14.7 131 158-341 11-144 (233)
327 4asc_A Kelch repeat and BTB do 96.0 1.1 3.8E-05 47.8 23.8 225 661-895 7-281 (315)
328 2ism_A Putative oxidoreductase 95.9 1.5 5.2E-05 48.1 25.2 224 651-879 32-333 (352)
329 4a0p_A LRP6, LRP-6, low-densit 95.9 4.3 0.00015 48.4 32.2 223 667-899 13-245 (628)
330 3sov_A LRP-6, low-density lipo 95.9 2.6 8.7E-05 45.7 26.7 211 712-928 12-236 (318)
331 3ott_A Two-component system se 95.8 5.1 0.00017 48.5 36.5 267 649-927 145-445 (758)
332 3ii7_A Kelch-like protein 7; p 95.8 0.75 2.6E-05 48.8 21.4 218 705-928 14-270 (306)
333 2woz_A Kelch repeat and BTB do 95.7 1.3 4.5E-05 47.3 22.9 222 670-897 25-293 (318)
334 2xn4_A Kelch-like protein 2; s 95.6 1.1 3.9E-05 47.3 21.8 219 704-928 17-274 (302)
335 4asc_A Kelch repeat and BTB do 95.5 1.2 4.1E-05 47.6 21.7 208 706-920 8-253 (315)
336 2vpj_A Kelch-like protein 12; 95.4 1.2 4.1E-05 47.1 20.9 222 702-928 14-276 (301)
337 3m0c_C LDL receptor, low-densi 95.3 7.7 0.00026 47.5 30.7 207 712-927 403-629 (791)
338 1zgk_A Kelch-like ECH-associat 95.3 0.69 2.4E-05 49.4 18.9 228 659-894 25-290 (308)
339 3ltm_A Alpha-REP4; protein eng 95.3 0.36 1.2E-05 48.5 15.6 128 289-457 80-207 (211)
340 2xzh_A Clathrin heavy chain 1; 95.0 5.2 0.00018 43.7 33.4 243 667-924 47-326 (365)
341 1bpo_A Protein (clathrin); cla 94.9 6.8 0.00023 44.4 33.4 241 668-923 47-324 (494)
342 3ltj_A Alpharep-4; protein eng 94.7 0.57 1.9E-05 46.5 15.0 173 289-532 13-187 (201)
343 2uvk_A YJHT; unknown function, 94.6 3 0.0001 45.2 21.9 232 659-897 19-348 (357)
344 2woz_A Kelch repeat and BTB do 94.6 3.2 0.00011 44.2 21.8 201 714-920 25-263 (318)
345 3ltj_A Alpharep-4; protein eng 94.6 1.6 5.3E-05 43.2 18.0 126 290-456 76-201 (201)
346 3kya_A Putative phosphatase; s 94.5 6.2 0.00021 45.6 25.1 234 693-928 140-473 (496)
347 3ltm_A Alpha-REP4; protein eng 94.5 0.72 2.5E-05 46.1 15.5 176 288-534 17-194 (211)
348 3a9g_A Putative uncharacterize 94.4 7.3 0.00025 42.7 30.1 225 650-879 29-330 (354)
349 2p9w_A MAL S 1 allergenic prot 94.2 6.4 0.00022 43.0 22.9 153 739-892 19-216 (334)
350 1n7d_A LDL receptor, low-densi 94.1 0.25 8.4E-06 60.0 12.7 221 668-900 385-623 (699)
351 1zgk_A Kelch-like ECH-associat 93.9 4.1 0.00014 43.2 20.8 220 702-928 24-285 (308)
352 3amr_A 3-phytase; beta-propell 93.9 8 0.00027 42.6 23.0 184 743-928 39-261 (355)
353 3s94_A LRP-6, low-density lipo 93.8 8.7 0.0003 45.6 25.2 224 667-898 16-250 (619)
354 3opb_A SWI5-dependent HO expre 93.2 0.47 1.6E-05 57.5 12.6 118 333-453 607-728 (778)
355 1n7d_A LDL receptor, low-densi 93.1 0.39 1.3E-05 58.2 12.0 208 712-928 385-612 (699)
356 3das_A Putative oxidoreductase 93.1 12 0.00042 40.9 29.3 229 649-879 31-326 (347)
357 3sre_A PON1, serum paraoxonase 93.0 6.1 0.00021 43.6 20.6 133 667-800 81-252 (355)
358 1xi4_A Clathrin heavy chain; a 93.0 7.1 0.00024 50.5 23.1 218 667-899 46-297 (1630)
359 3qhy_B Beta-lactamase inhibito 92.9 11 0.00038 39.8 22.4 245 651-922 25-274 (282)
360 4a0p_A LRP6, LRP-6, low-densit 92.8 20 0.00068 42.6 28.1 191 650-851 37-239 (628)
361 3amr_A 3-phytase; beta-propell 92.6 15 0.0005 40.5 24.7 188 661-856 42-271 (355)
362 1oyz_A Hypothetical protein YI 92.5 3.6 0.00012 42.9 17.4 234 156-471 24-261 (280)
363 2bpt_A Importin beta-1 subunit 92.3 6.6 0.00022 47.8 21.8 202 233-456 324-532 (861)
364 3s25_A Hypothetical 7-bladed b 92.3 14 0.00047 39.6 23.4 196 701-917 23-240 (302)
365 1ibr_B P95, importin beta-1 su 91.7 8.1 0.00028 42.9 20.1 313 105-456 86-440 (462)
366 2be1_A Serine/threonine-protei 91.5 2.4 8.2E-05 46.5 14.8 102 659-762 10-129 (339)
367 2p9w_A MAL S 1 allergenic prot 91.4 19 0.00064 39.3 25.5 201 653-894 16-268 (334)
368 3qhy_B Beta-lactamase inhibito 91.2 11 0.00039 39.7 19.5 214 692-926 24-242 (282)
369 4fdd_A Transportin-1; heat rep 91.1 4.7 0.00016 49.6 18.7 84 383-467 402-485 (852)
370 4fdd_A Transportin-1; heat rep 91.0 3.1 0.00011 51.2 16.9 160 290-456 215-432 (852)
371 1ibr_B P95, importin beta-1 su 89.8 7.1 0.00024 43.4 17.3 185 153-363 33-248 (462)
372 3grl_A General vesicular trans 89.7 0.85 2.9E-05 54.0 9.5 92 288-379 120-222 (651)
373 1bpo_A Protein (clathrin); cla 89.4 33 0.0011 38.9 26.8 215 668-888 85-328 (494)
374 2xzh_A Clathrin heavy chain 1; 89.4 28 0.00095 38.0 26.2 213 668-888 86-329 (365)
375 3tt9_A Plakophilin-2; cell adh 89.4 0.6 2.1E-05 48.6 7.2 117 234-363 9-126 (233)
376 1cru_A Protein (soluble quinop 89.3 34 0.0011 38.8 28.0 60 650-709 27-97 (454)
377 3kya_A Putative phosphatase; s 88.6 40 0.0014 38.8 28.1 241 651-895 140-479 (496)
378 3opb_A SWI5-dependent HO expre 88.6 6.6 0.00023 47.6 16.3 403 129-573 313-761 (778)
379 2g8s_A Glucose/sorbosone dehyd 86.9 38 0.0013 36.7 26.2 226 651-878 19-340 (353)
380 3qqz_A Putative uncharacterize 86.6 34 0.0011 35.7 25.6 194 647-847 24-251 (255)
381 2uvk_A YJHT; unknown function, 85.9 24 0.00081 37.9 17.9 181 669-856 86-349 (357)
382 1qgr_A Protein (importin beta 85.5 33 0.0011 41.6 20.8 186 153-364 33-249 (876)
383 2vgl_B AP-2 complex subunit be 85.0 31 0.0011 40.3 19.6 78 103-188 115-192 (591)
384 2qk2_A LP04448P; mini spindles 84.4 11 0.00037 38.4 13.5 188 233-455 15-207 (242)
385 1oyz_A Hypothetical protein YI 84.4 27 0.00093 36.0 16.9 184 288-525 52-263 (280)
386 2zwa_A Leucine carboxyl methyl 84.4 17 0.0006 43.6 17.3 191 659-853 398-639 (695)
387 2bpt_A Importin beta-1 subunit 84.2 40 0.0014 40.7 20.7 154 289-456 323-485 (861)
388 3pbp_A Nucleoporin NUP82; beta 83.7 18 0.00061 40.9 15.5 89 839-928 40-156 (452)
389 1qgr_A Protein (importin beta 83.6 46 0.0016 40.2 21.0 311 105-457 86-441 (876)
390 2be1_A Serine/threonine-protei 83.5 24 0.00081 38.5 16.3 102 704-805 11-135 (339)
391 3kci_A Probable E3 ubiquitin-p 83.5 57 0.002 35.8 29.5 263 659-926 10-341 (389)
392 3grl_A General vesicular trans 83.5 16 0.00055 43.2 15.6 205 151-363 162-396 (651)
393 4d9s_A UVB-resistance protein 83.3 60 0.002 35.9 36.3 270 650-926 16-353 (406)
394 1u6g_C TIP120 protein, CAND1; 83.1 29 0.00099 44.4 19.6 189 260-454 350-599 (1230)
395 3s25_A Hypothetical 7-bladed b 82.9 53 0.0018 35.0 30.3 234 656-918 22-280 (302)
396 2zwa_A Leucine carboxyl methyl 82.1 32 0.0011 41.2 18.3 194 701-895 396-639 (695)
397 1w63_A Adapter-related protein 81.8 21 0.00071 42.2 16.3 41 154-195 141-181 (618)
398 3s94_A LRP-6, low-density lipo 81.0 95 0.0032 36.6 32.9 224 661-893 319-553 (619)
399 1b3u_A Protein (protein phosph 80.9 45 0.0016 38.0 18.6 156 289-452 401-586 (588)
400 2vgl_A Adaptor protein complex 80.6 42 0.0014 39.6 18.4 79 104-189 141-220 (621)
401 2ism_A Putative oxidoreductase 80.4 69 0.0024 34.6 26.7 95 691-788 30-152 (352)
402 1xi4_A Clathrin heavy chain; a 80.1 37 0.0013 44.1 18.0 204 712-928 47-287 (1630)
403 1u6g_C TIP120 protein, CAND1; 78.7 23 0.00078 45.3 16.4 252 135-454 28-285 (1230)
404 4gmo_A Putative uncharacterize 76.4 15 0.00051 44.1 12.9 84 109-198 35-119 (684)
405 2qk2_A LP04448P; mini spindles 75.4 6.4 0.00022 40.2 8.1 212 114-394 20-235 (242)
406 3mvd_K Regulator of chromosome 74.3 1.1E+02 0.0037 33.7 32.6 228 693-926 76-370 (423)
407 1b3u_A Protein (protein phosph 73.3 36 0.0012 38.9 14.7 293 109-456 11-313 (588)
408 2qk1_A Protein STU2; STU2P, XM 72.8 51 0.0017 33.9 14.3 171 154-374 59-234 (249)
409 3das_A Putative oxidoreductase 72.7 86 0.0029 34.2 16.7 108 772-879 32-158 (347)
410 2of3_A ZYG-9; multifunctional 69.2 12 0.0004 39.6 8.3 73 286-363 162-238 (266)
411 2g8s_A Glucose/sorbosone dehyd 69.0 87 0.003 33.8 15.9 107 774-880 20-149 (353)
412 1tl2_A L10, protein (tachylect 68.7 34 0.0012 35.2 11.3 105 773-890 42-162 (236)
413 3b2a_A TON_1937, putative unch 67.9 21 0.00072 36.9 9.4 115 334-453 35-179 (265)
414 1a12_A RCC1, regulator of chro 67.1 1.5E+02 0.0052 32.5 32.8 228 692-926 59-361 (413)
415 3pbp_A Nucleoporin NUP82; beta 66.9 23 0.00077 40.0 10.4 69 648-717 123-207 (452)
416 4gq2_M Nucleoporin NUP120; bet 66.6 2.5E+02 0.0086 34.8 24.6 38 862-899 237-274 (950)
417 2vgl_B AP-2 complex subunit be 65.2 50 0.0017 38.5 13.8 124 218-360 107-230 (591)
418 3mvd_K Regulator of chromosome 64.3 1.7E+02 0.0059 32.1 30.6 186 735-926 75-318 (423)
419 4d9s_A UVB-resistance protein 61.7 1.9E+02 0.0065 31.7 29.6 229 691-926 15-301 (406)
420 3kci_A Probable E3 ubiquitin-p 61.7 1.8E+02 0.0063 31.6 31.2 235 651-890 54-344 (389)
421 3a9g_A Putative uncharacterize 56.9 2.1E+02 0.0072 30.7 26.5 223 691-918 28-330 (354)
422 1te4_A Conserved protein MTH18 55.2 46 0.0016 30.1 8.8 86 335-450 45-130 (131)
423 4gq2_M Nucleoporin NUP120; bet 55.2 1.6E+02 0.0055 36.6 16.4 37 693-729 237-273 (950)
424 3tjz_B Coatomer subunit gamma; 47.3 52 0.0018 36.1 9.0 95 337-453 181-279 (355)
425 1tl2_A L10, protein (tachylect 46.9 70 0.0024 32.9 9.2 100 818-924 41-157 (236)
426 3sbq_A Nitrous-oxide reductase 45.3 4.3E+02 0.015 30.9 23.7 242 661-919 144-454 (638)
427 4ady_A RPN2, 26S proteasome re 43.6 1.8E+02 0.0062 36.1 13.8 212 292-536 431-669 (963)
428 4fhn_B Nucleoporin NUP120; pro 42.9 77 0.0026 40.3 10.9 38 862-899 239-276 (1139)
429 1te4_A Conserved protein MTH18 41.5 24 0.00082 32.1 4.4 58 383-452 44-101 (131)
430 3of7_A Regulator of chromosome 39.8 4.4E+02 0.015 29.4 29.7 255 667-926 27-401 (473)
431 1a12_A RCC1, regulator of chro 38.7 4.2E+02 0.014 28.8 31.3 231 650-890 59-364 (413)
432 1ho8_A Vacuolar ATP synthase s 38.4 2.8E+02 0.0095 31.5 13.3 294 154-448 76-471 (480)
433 1w63_A Adapter-related protein 36.5 5.6E+02 0.019 29.7 17.9 146 292-456 387-543 (618)
434 2fv2_A RCD1 required for cell 35.0 49 0.0017 34.5 5.9 39 216-272 136-174 (268)
435 4ffb_C Protein STU2; tubulin f 34.6 1.2E+02 0.0041 31.3 9.2 95 261-361 73-168 (278)
436 3sre_A PON1, serum paraoxonase 33.1 5E+02 0.017 28.1 31.3 197 693-899 51-308 (355)
437 2wg3_C Hedgehog-interacting pr 31.3 5.7E+02 0.019 28.7 14.7 22 861-882 139-160 (463)
438 3f7f_A Nucleoporin NUP120; nuc 31.0 1.5E+02 0.0053 35.5 10.1 39 649-687 221-259 (729)
439 4fhn_B Nucleoporin NUP120; pro 31.0 1.1E+02 0.0039 38.8 9.6 38 693-730 239-276 (1139)
440 1cru_A Protein (soluble quinop 31.0 5.9E+02 0.02 28.3 19.4 108 773-880 28-163 (454)
441 4hvt_A Ritya.17583.B, post-pro 28.8 8E+02 0.027 29.1 19.5 214 669-890 156-429 (711)
442 3sbq_A Nitrous-oxide reductase 27.0 73 0.0025 37.2 6.1 88 841-928 299-406 (638)
443 2p1h_A APAF-1, apoptotic prote 26.2 61 0.0021 27.9 4.2 77 323-405 13-89 (94)
444 2kr4_A Ubiquitin conjugation f 25.6 2.5 8.5E-05 36.5 -5.0 58 169-228 20-79 (85)
445 2qk1_A Protein STU2; STU2P, XM 23.8 4.9E+02 0.017 26.3 11.5 139 296-452 22-174 (249)
446 1wgm_A Ubiquitin conjugation f 23.6 3.3 0.00011 36.7 -4.6 56 169-226 28-86 (98)
447 2iw3_A Elongation factor 3A; a 23.5 4.1E+02 0.014 33.1 12.3 191 106-332 12-239 (986)
448 3dad_A FH1/FH2 domain-containi 22.7 7.4E+02 0.025 26.7 14.8 181 146-378 109-305 (339)
449 3dss_B Geranylgeranyl transfer 22.2 1.6E+02 0.0054 31.8 7.5 140 305-471 66-223 (331)
450 2kre_A Ubiquitin conjugation f 20.5 3.5 0.00012 36.7 -5.2 56 169-226 35-92 (100)
451 4ady_A RPN2, 26S proteasome re 20.1 1.3E+03 0.044 28.5 16.5 160 292-471 474-655 (963)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-35 Score=321.94 Aligned_cols=279 Identities=16% Similarity=0.173 Sum_probs=241.0
Q ss_pred EeecCCCCCCEEEEEEeC------CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389 642 LEASHKCSGAVTALIYYK------GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTI 715 (929)
Q Consensus 642 l~~~~gH~~~Vtsl~fs~------~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtI 715 (929)
++...+|.++|++++|++ .+|+||+.||+|+|||+.+++......+.+|..+|.+++|+|++..++||+.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 345569999999999972 38999999999999999887665667889999999999999999999999999999
Q ss_pred EEEEccCCeEEEEEEeccCCCe--EEeccCCCEEEEEecCCeEEEEeCCCc--eeeecc-CCCeEEEEEe-CCE-EEEEE
Q 002389 716 GVWQMVQRKLELIEVIATKEPI--RKLDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR-SKGIKSMSVV-QGK-IYIGC 788 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~~~V--~s~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~-~~~V~sla~s-dg~-llsgs 788 (929)
++||+.+++..... ..+...+ .+|+|+++++++++.|+.|++||+... ...+.. ...+.+++|+ +|+ +++|+
T Consensus 105 ~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 105 RLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999998754433 3444444 368899999999999999999999843 223333 4569999997 665 88899
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf 868 (929)
.|+.|++||+.+++.. ..+.+|..+|.++.++|++.++++.+ .|++|++||.+.+.....+.+|...|.+++|
T Consensus 184 ~dg~i~iwd~~~~~~~------~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 256 (321)
T 3ow8_A 184 IDGIINIFDIATGKLL------HTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256 (321)
T ss_dssp TTSCEEEEETTTTEEE------EEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcEE------EEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence 9999999999887543 33467888999999999999888876 7899999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 869 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+|++.+|++|+.||+|++||+.+++++.++.+|. .|++++|+ ++.|++++.||+|++||+
T Consensus 257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999999999984 59999986 679999999999999995
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.8e-35 Score=333.33 Aligned_cols=272 Identities=17% Similarity=0.228 Sum_probs=236.6
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.++|++++|+ +.++++|+.||+|+|||+.+++. ...+.+|.++|++++|+|+|++|++|+.||+|++||+.+++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 183 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 899999999999 44999999999999999998864 67889999999999999999999999999999999998877
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEE
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELA 797 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwD 797 (929)
+. ....+|...|.+ |.++++++++++.|++|++||+.. ....+.. ...|.++.++ +|. +++|+.|+.|++||
T Consensus 184 ~~-~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 184 CI-RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp EE-ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ee-EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 43 334578888886 578899999999999999999873 3444544 4569999997 665 88899999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCC--------------------ceEEEEEecCCCeEEEEECCCCCeEEEec
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKD--------------------WLYSASSSVEGSNIKEWRRHRKPQISIAP 857 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d--------------------~i~~~s~S~dDgtI~IWDl~~~~~i~~l~ 857 (929)
+.++.... .+..|...+.++.++|+ +.++++++ .|++|++||+.++..+..+.
T Consensus 263 ~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 263 VATKECKA------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-RDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp TTTCCEEE------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-TTSEEEEEETTTTEEEEEEE
T ss_pred CCCCceee------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-CCCeEEEEECCCCceEEEEE
Confidence 98865432 33567889999999985 44566666 78999999999999999999
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 858 EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 858 ~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+|...|++++|+|+|++|++|+.||+|++||..+++++.++.+|. .|++++|+ +.+|++|+.||+|++|++
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999995 59999986 669999999999999985
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-32 Score=306.46 Aligned_cols=273 Identities=14% Similarity=0.181 Sum_probs=230.7
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|.++|++++|+ +.+|++|+.||+|+|||..+++. +..+..|...|.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence 4899999999999 34999999999999999998754 7788899999999999999999999999999999999875
Q ss_pred e---EEEEEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEE
Q 002389 724 K---LELIEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQ 794 (929)
Q Consensus 724 ~---~~~~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~ 794 (929)
. .......+|...|.++. ..+..+++++.|++|++||+.. ....+.. ...|.+++|+ ++. +++|+.|+.|+
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 3 23344557888888643 2334699999999999999874 3334443 4569999997 554 88899999999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC--CCCCeEEEEEecCC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDF 872 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~--h~~~V~slafSpdg 872 (929)
+||+.++... ..+.+|...|.++.++|++.++++.+ .|++|++||++.+.....+.. +...|.+++|+|+|
T Consensus 210 ~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 210 LWDVREGMCR------QTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EEETTTCSEE------EEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEECCCCeeE------EEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence 9999886543 33467889999999999999888877 789999999998877666643 33479999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 873 IYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+++++|+.||.|++||..+++.+..+.+|. +|++++|+ |++|++|+.||+|++||
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999994 59998876 67999999999999997
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-32 Score=297.68 Aligned_cols=272 Identities=14% Similarity=0.210 Sum_probs=228.8
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.+.|++++|+ +.+|++|+.||+|++||+.++. .+..+.+|..+|.+++|+|++++|++|+.|++|++||+.+++
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 88 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 899999999999 3489999999999999999875 478889999999999999999999999999999999999987
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc---eeeecc-CCCeEEEEEe--CC-EEEEEECCCcEEE
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVV--QG-KIYIGCMDSSIQE 795 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~~-~~~V~sla~s--dg-~llsgs~Dg~I~i 795 (929)
.. ....+|...|.+ +++++.++++++.|++|++||+... ...+.. ...|.+++|+ ++ .+++|+.|+.|++
T Consensus 89 ~~-~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i 167 (304)
T 2ynn_A 89 KV-VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (304)
T ss_dssp EE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EE-EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 54 345578888986 5788999999999999999998743 223333 4569999997 33 4889999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcC--CceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYK--DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~--d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
||+.++..... ....+...+..+.+++ ++.++++.+ .|++|++||++++..+..+.+|...|.+++|+|++.
T Consensus 168 wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 168 WSLGQSTPNFT-----LTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp EETTCSSCSEE-----EECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred EECCCCCccce-----eccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence 99977543221 2234567788888875 566777776 789999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CC--EEEEEECCCcEEEeec
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--ND--IVLCGTETGLIKGWIP 928 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~--~LaSgs~DG~I~IWdi 928 (929)
+|++|+.||+|++||..+++.+.++..| ..++++++. +. ++++|+.|| +.+|++
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999999999999988 459999865 32 588888777 666653
No 5
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=301.33 Aligned_cols=276 Identities=14% Similarity=0.176 Sum_probs=216.1
Q ss_pred CCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEe-cc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDV-KE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l-~g-H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.++|++++|++++|++|+.||+|++||+..+.......+ .+ |.++|++++|+|++++|++|+.|++|++||+..+.
T Consensus 12 ~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 12 LYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp CCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----
T ss_pred cCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCc
Confidence 89999999999977999999999999999987654445556 44 99999999999999999999999999999985421
Q ss_pred ------EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC------ceeeecc-CCCeEEEEEe-CC-EEEEE
Q 002389 725 ------LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR------TLKDIYR-SKGIKSMSVV-QG-KIYIG 787 (929)
Q Consensus 725 ------~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~------~~~~l~~-~~~V~sla~s-dg-~llsg 787 (929)
.......+|...|.+ |+++++++++++.|++|++||+.. ....+.. ...|.+++|+ ++ .+++|
T Consensus 92 ~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 92 DRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171 (330)
T ss_dssp ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred CccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE
Confidence 122334578888885 678999999999999999999942 1233333 4569999997 55 48899
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCC--------CeEEEec
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRK--------PQISIAP 857 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~--------~~i~~l~ 857 (929)
+.|++|++||..++....+ ..+.+|...|.++.++|+ +..+++.+ .|++|++||+..+ .....+.
T Consensus 172 s~D~~i~iW~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECV----AVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp ETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECCSSSSCEEEEEE-TTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred cCCCeEEEEECCCCCeeEE----EEccCCCCcEEEEEecCCCCeeEEEEEe-CCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999876532222 445788999999999998 55666666 7899999998654 3344555
Q ss_pred C-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--EEEEE-eCCC--CeEEEEEc----CCEEEEEECCCcEEEee
Q 002389 858 E-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ--KVGRI-SAGS--KITSLLTA----NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 858 ~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~--~i~tl-~~h~--~Vtsvs~d----g~~LaSgs~DG~I~IWd 927 (929)
+ |...|.+++|++++ +|++|+.||.|++|+..+++ .+... .+|. .|++++|+ +++|++|+.||+|++|+
T Consensus 247 ~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 4 89999999999765 89999999999999988874 34343 4564 59998875 56899999999999998
Q ss_pred c
Q 002389 928 P 928 (929)
Q Consensus 928 i 928 (929)
+
T Consensus 326 ~ 326 (330)
T 2hes_X 326 L 326 (330)
T ss_dssp C
T ss_pred e
Confidence 5
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-31 Score=294.19 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=229.2
Q ss_pred CCCCCCEEEEEEe--C-CEEEEEECCCeEEEEECCCCCe---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 646 HKCSGAVTALIYY--K-GLLCSGFSDGSIKMWDIKKQSA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~-~~LaSGs~DGtIrIWD~~~~~~---~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
.||.++|++++|+ + ++|+||+.||+|++||+.+... .++..+.+|..+|++++|+|+|++|+||+.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4999999999998 2 4899999999999999874321 35678899999999999999999999999999999999
Q ss_pred ccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-eeeecc-CCCeEEEEEeC-------C-EEEEE
Q 002389 720 MVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-LKDIYR-SKGIKSMSVVQ-------G-KIYIG 787 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~-~~~V~sla~sd-------g-~llsg 787 (929)
+.+++.. ....+|..+|.+ +++++..+++++.|++|++||+++. ...+.. ...|.++.+.. + .++++
T Consensus 94 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 94 VATGETY-QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTTEEE-EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCCCee-EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 9998753 445678999986 5688999999999999999999843 333333 45688888852 2 48899
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
+.|+.|++||+.++... ..+.+|...|.++.++|++.++++.+ .|++|++||+.++..+..+..+ ..|.+++
T Consensus 173 ~~d~~i~~wd~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 244 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIE------ADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAAKKAMYTLSAQ-DEVFSLA 244 (319)
T ss_dssp ETTSCEEEEETTTTEEE------EEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTTEEEEEEECC-SCEEEEE
T ss_pred eCCCEEEEEECCcchhh------eeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCC-CcEEEEE
Confidence 99999999999875432 23467889999999999999988877 7899999999999888877655 6799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---------CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG---------SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h---------~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+|++.++++++. +.+++|++..+..+..+..+ ..|.+++|+ |++|++|+.||+|++|++
T Consensus 245 ~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 245 FSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp ECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 9999999999885 55999999988888777543 238888875 789999999999999986
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-31 Score=299.41 Aligned_cols=272 Identities=13% Similarity=0.158 Sum_probs=230.3
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
||.++|++++|+ +.+|+||+.||+|+|||..+++. ...+..|...|.+++|+|+|.++++|+.|+.+++|++..+.
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 899999999999 34999999999999999988754 66778899999999999999999999999999999986431
Q ss_pred -----EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe---CC-EEEEEECC
Q 002389 725 -----LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV---QG-KIYIGCMD 790 (929)
Q Consensus 725 -----~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s---dg-~llsgs~D 790 (929)
........|...|.+ |.+++..+++++.|++|++||+.. ....+.. ...|.++++. +| .+++|+.|
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 112234468888875 678889999999999999999873 3444544 4568898885 33 58899999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC--CCCeEEEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAMAV 868 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h--~~~V~slaf 868 (929)
|.|++||+.++... ..+..|...|.++.++|++.++++.+ .|++|++||++.+.....+..+ ...+.+++|
T Consensus 220 g~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 220 KKAMVWDMRSGQCV------QAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp SCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred CeEEEEECCCCcEE------EEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999999987543 33467889999999999998888877 7899999999988776666544 347899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 869 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+|+|.++++|+.||+|++||+.+++.+..+.+| +.|++++|+ |++|++|+.||+|++|+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999 459998875 77999999999999996
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-32 Score=308.96 Aligned_cols=275 Identities=14% Similarity=0.166 Sum_probs=226.1
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.||.++|++++|+ +.+|+||+.||+|+|||..+++ ....+.+|...|.+++|+|+|++|++|+.|+.+++||+.++
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 3999999999999 4489999999999999999875 47888999999999999999999999999999999998653
Q ss_pred eE------EEEEEeccCCCeEE--eccC-CCEEEEEecCCeEEEEeCCCc--eeee------ccCCCeEEEEEe--CC-E
Q 002389 724 KL------ELIEVIATKEPIRK--LDTY-GKTIFASTQGHRMKVIDSSRT--LKDI------YRSKGIKSMSVV--QG-K 783 (929)
Q Consensus 724 ~~------~~~~~~~h~~~V~s--~s~~-g~~L~sgs~Dg~V~IWDl~~~--~~~l------~~~~~V~sla~s--dg-~ 783 (929)
.. ......+|...+.+ +.++ +..+++++.|++|++||+... ...+ .+...|.++.+. ++ .
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 21 11223467777765 4444 457999999999999999842 2222 124468999985 44 4
Q ss_pred EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC--
Q 002389 784 IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT-- 861 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~-- 861 (929)
+++|+.|+.|++||+..... ..+.+.+|...|.++.++|++.++++.+ .|++|++||+.++..+..+..+..
T Consensus 221 l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp EEEEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred EEEEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEEEECCCCcEEEEeccccccc
Confidence 88999999999999974321 1244577899999999999999888877 789999999999988877765432
Q ss_pred -----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE----eCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 862 -----TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI----SAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 862 -----~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl----~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.|++++|+|+|+++++|+.||.|++||..+++.+..+ .+| +.|++++|+ |++|++|+.||+|++|++
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 4899999999999999999999999999999998888 456 459998875 789999999999999985
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=296.65 Aligned_cols=278 Identities=14% Similarity=0.146 Sum_probs=222.2
Q ss_pred CCCCC-CEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 646 HKCSG-AVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVW-DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~-~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~-~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
.+|.+ .|++++|+ +.+|++|+.||+|+|||..++...... ...+|.+.|++++|+|+|++|++|+.|++|++||..
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 37887 99999999 348999999999999999887533222 236899999999999999999999999999999998
Q ss_pred CCeEEE-EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-----eeeecc-CCCeEEEEEe-CCE-EEEEECC
Q 002389 722 QRKLEL-IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-----LKDIYR-SKGIKSMSVV-QGK-IYIGCMD 790 (929)
Q Consensus 722 tg~~~~-~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-----~~~l~~-~~~V~sla~s-dg~-llsgs~D 790 (929)
++...+ ....+|..+|.+ |+++++++++++.|++|++||+... ...+.. ...|.+++|+ ++. +++|+.|
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 876443 344578889985 6789999999999999999998732 223333 4569999997 555 8899999
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC---------------CeEEE
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK---------------PQISI 855 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~---------------~~i~~ 855 (929)
+.|++||..++..... ..+.+|...|.++.++|++.++++.+ .|++|++||.... ..+..
T Consensus 172 ~~i~~w~~~~~~~~~~----~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCC----ATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp SCEEEEEEETTEEEEE----EEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred CcEEEEEecCCCEEEE----EEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 9999999987643322 34467889999999999999988877 7899999995221 12334
Q ss_pred ecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc----EE-----EEEeCC-CCeEEEEEcC---CEEEEEECCC
Q 002389 856 APE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ----KV-----GRISAG-SKITSLLTAN---DIVLCGTETG 921 (929)
Q Consensus 856 l~~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~----~i-----~tl~~h-~~Vtsvs~dg---~~LaSgs~DG 921 (929)
+.+ |...|.+++|+|++.++++++.|+.|++|+...+. +. ....+| ..|++++|++ .+|++|+.||
T Consensus 247 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 444 88899999999999999999999999999976542 11 122356 4499999873 4999999999
Q ss_pred cEEEeec
Q 002389 922 LIKGWIP 928 (929)
Q Consensus 922 ~I~IWdi 928 (929)
+|++|+.
T Consensus 327 ~v~~W~~ 333 (345)
T 3fm0_A 327 EVAFWKY 333 (345)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 9999985
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.5e-31 Score=285.85 Aligned_cols=274 Identities=15% Similarity=0.200 Sum_probs=230.4
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|.++|++++|+ +.+|++|+.||.|++|+..+++. ...+.+|..+|.+++|+|++++|++|+.||+|++||+.++
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 3899999999999 44899999999999999988754 6788999999999999999999999999999999999998
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
+... ...+|...|.+ +.++++.+++++.|+.|++||+.. ....+.. ...|.+++|+ ++. +++|+.|+.|++|
T Consensus 98 ~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 176 (312)
T 4ery_A 98 KCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176 (312)
T ss_dssp CEEE-EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 7543 44568888875 678899999999999999999973 3344443 4569999997 554 8889999999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE--EEE-ecCCC
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA--MAV-VEDFI 873 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~s--laf-Spdg~ 873 (929)
|+.+++.... ....+..++..+.++|++.++++.+ .|+.|++||+.++.....+.+|...+.. ..+ .+++.
T Consensus 177 d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 177 DTASGQCLKT-----LIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp ETTTCCEEEE-----ECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred ECCCCceeeE-----EeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 9988654322 1234567899999999999888776 7789999999999989889888765432 233 46899
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEc--CCEEEEEE--CCCcEEEeec
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAGSK-ITSLLTA--NDIVLCGT--ETGLIKGWIP 928 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~-Vtsvs~d--g~~LaSgs--~DG~I~IWdi 928 (929)
++++|+.||.|++||+.+++.+..+.+|.. |.+++|+ ++++++++ .||+|++|+.
T Consensus 251 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 999999999999999999999999999954 8998876 67999887 6999999985
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-31 Score=301.28 Aligned_cols=277 Identities=15% Similarity=0.239 Sum_probs=225.9
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCC------------------CcEEEEEEcCCCCEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR------------------KAVTSFSLFEPGESL 706 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~------------------~~Vtslafspdg~~L 706 (929)
+|.+.|++++|+ ++ +|++|+ |++++||++.+++. +..+.+|. ..|++++|+|+|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 599999999999 44 788765 78999999998764 55555443 249999999999999
Q ss_pred EEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe--
Q 002389 707 LSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-- 780 (929)
Q Consensus 707 aSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-- 780 (929)
++|+.||+|++||+.+++.. ....+|...|.+ |+++++.+++++.|++|++||+.. ....+.....+.+++++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp EEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred EEEcCCCeEEEEECCCCcEE-EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 99999999999999988743 345578888886 578899999999999999999974 33444556779999996
Q ss_pred CCE-EEEEECCCcEEEEEccCCccceec-ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC--------
Q 002389 781 QGK-IYIGCMDSSIQELAVSNNVEREIK-APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-------- 850 (929)
Q Consensus 781 dg~-llsgs~Dg~I~iwDl~tg~~~~i~-~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-------- 850 (929)
++. +++|+.|+.|++||+.++...... .......+|...|.++.++|++.++++.+ .|++|++||+...
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC-----------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCCCCCcccccC
Confidence 555 888999999999999887643221 11122256788999999999998888877 7899999998653
Q ss_pred ----CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--------CCEEEEE
Q 002389 851 ----PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--------NDIVLCG 917 (929)
Q Consensus 851 ----~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--------g~~LaSg 917 (929)
.....+.+|...|.+++|+|++.+|++|+.||.|++||..+++++..+.+|. .|++++|. +++|++|
T Consensus 297 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 3455778899999999999999999999999999999999999999999994 59999875 4699999
Q ss_pred ECCCcEEEeec
Q 002389 918 TETGLIKGWIP 928 (929)
Q Consensus 918 s~DG~I~IWdi 928 (929)
+.||+|++|+.
T Consensus 377 s~Dg~i~iW~~ 387 (393)
T 1erj_A 377 SGDCKARIWKY 387 (393)
T ss_dssp ETTSEEEEEEE
T ss_pred CCCCcEEECcc
Confidence 99999999985
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.2e-31 Score=292.24 Aligned_cols=272 Identities=16% Similarity=0.200 Sum_probs=219.1
Q ss_pred CCCCCCEEEEEE-----e---CCEEEEEECCCeEEEEECCCCC-----eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 646 HKCSGAVTALIY-----Y---KGLLCSGFSDGSIKMWDIKKQS-----AMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 646 ~gH~~~Vtsl~f-----s---~~~LaSGs~DGtIrIWD~~~~~-----~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D 712 (929)
.||.++|++++| + +.+|+||+.||+|++||+.+.+ ..+...+.+|..+|++++|+|++.+++||+.|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 489999999999 4 3489999999999999997543 23567789999999999999999999999999
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceee-e----ccCCCeEEEEEe-C---
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD-I----YRSKGIKSMSVV-Q--- 781 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~-l----~~~~~V~sla~s-d--- 781 (929)
++|++||+.+++.. ....+|...|.+ |+++++++++++.|++|++||+.+.... . .+...|.+++|+ +
T Consensus 98 ~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 98 KTLRLWDLRTGTTY-KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp SEEEEEETTSSCEE-EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred CcEEEEECCCCcEE-EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccc
Confidence 99999999998754 345578888885 6789999999999999999998743222 1 124569999997 3
Q ss_pred --------CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCe
Q 002389 782 --------GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQ 852 (929)
Q Consensus 782 --------g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~ 852 (929)
..+++++.|+.|++||... ... ..+..|...|.++.++|++.++++.+ .|++|++||+. ....
T Consensus 177 ~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~------~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 177 ANKVQPFAPYFASVGWDGRLKVWNTNF-QIR------YTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNLTYP 248 (343)
T ss_dssp CSCCCSSCCEEEEEETTSEEEEEETTT-EEE------EEEECCSSCEEEEEECTTSSEEEEEE-TTCEEEEEESSCCSSC
T ss_pred ccccCCCCCEEEEEcCCCEEEEEcCCC-cee------EEEcCccccceEEEECCCCCEEEEEc-CCCeEEEEECCCCccc
Confidence 3588999999999999543 111 23467889999999999999988877 78999999984 4443
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEe-----------CC-CCeEEEEEc--CCEEEE
Q 002389 853 ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG--RIS-----------AG-SKITSLLTA--NDIVLC 916 (929)
Q Consensus 853 i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~--tl~-----------~h-~~Vtsvs~d--g~~LaS 916 (929)
...+ .+...|.+++|+|++.++++| .|+.|++|++.+++... .+. +| ..|++++|+ |++|++
T Consensus 249 ~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 249 QREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp SEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred ceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 3333 345679999999999988766 48889999998776543 444 44 349999886 789999
Q ss_pred EECCCcEEEeec
Q 002389 917 GTETGLIKGWIP 928 (929)
Q Consensus 917 gs~DG~I~IWdi 928 (929)
|+.||+|++|+.
T Consensus 327 g~~Dg~v~~w~~ 338 (343)
T 2xzm_R 327 GFTDGVIRTFSF 338 (343)
T ss_dssp EETTSEEEEEEE
T ss_pred ecCCceEEEEEE
Confidence 999999999985
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.9e-32 Score=303.32 Aligned_cols=275 Identities=13% Similarity=0.081 Sum_probs=216.2
Q ss_pred CCCCCEEEEEEe-CC-EEEEEEC------CCeEEEEECCCCCee--EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFS------DGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 716 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~------DGtIrIWD~~~~~~~--~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIr 716 (929)
+|++.|++++|+ || +|++|+. ||+|++|+..++... ......+|...|++++|+|++. +++++.||+|+
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~ 118 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE 118 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence 799999999999 44 8999997 788999998765421 2233457999999999999975 56678899999
Q ss_pred EEEccCCeEEE---EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeecc-CCCeEEEEEe-CC--EEE
Q 002389 717 VWQMVQRKLEL---IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR-SKGIKSMSVV-QG--KIY 785 (929)
Q Consensus 717 IWDl~tg~~~~---~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~-~~~V~sla~s-dg--~ll 785 (929)
+||+.+++... ....+|...|.+ |+++++++++++.|++|++||+... ...+.. ...|.+++|+ ++ .++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 99998876432 233478888986 6789999999999999999999843 334443 4569999997 43 488
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ 864 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~ 864 (929)
+++.|+.|++||+.+++..... ....+...+.++.++|+. .++++.+ .|+.|++||+.++.....+.+|...|+
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~----~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~wd~~~~~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRI----DFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLVNIKNPDSAQTSAVHSQNIT 273 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBC----CCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEEESSCGGGCEEECCCSSCEE
T ss_pred eeccCCceEEEECCCCceeeee----eeccccccccchhhhhcccceEEEee-cccceeEEECCCCcEeEEEeccceeEE
Confidence 9999999999999887654321 223456789999999874 4455444 788999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc---CCEEEEEECCCcEEEeec
Q 002389 865 AMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA---NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 865 slafSpdg-~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d---g~~LaSgs~DG~I~IWdi 928 (929)
+++|+|++ ++|++|+.||+|+|||+++++.+..+ +| ..|++++|+ +++|++|+.||+|++|++
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 99999987 68999999999999999999887765 56 569999985 679999999999999985
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.5e-30 Score=279.62 Aligned_cols=273 Identities=16% Similarity=0.242 Sum_probs=223.5
Q ss_pred CCCCCCEEEEEEe-C--CEEEEEECCCeEEEEECCCCCe---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 646 HKCSGAVTALIYY-K--GLLCSGFSDGSIKMWDIKKQSA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~--~~LaSGs~DGtIrIWD~~~~~~---~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
.||.++|++|+|+ + ++|+|||.||+|+|||+.+.+. .+...+.+|..+|++++|+|+|++|++|+.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 4999999999998 2 4899999999999999986542 35678899999999999999999999999999999999
Q ss_pred ccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeec----cCCCeEEEEEe-C---CEEEEEEC
Q 002389 720 MVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIY----RSKGIKSMSVV-Q---GKIYIGCM 789 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~----~~~~V~sla~s-d---g~llsgs~ 789 (929)
...+...... ..+...+. .+.+.+..+++++.|+.+++||......... +...+.++++. + ..+++++.
T Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~ 193 (340)
T 4aow_A 115 LTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193 (340)
T ss_dssp TTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred ecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC
Confidence 9887654333 33444443 4678899999999999999999875433221 24568888886 2 23778999
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS 869 (929)
|+.|++||+.++.... .+.+|..+|.++.++|++.++++.+ .|++|++||+.+...+..+.++ ..|.+++|+
T Consensus 194 d~~i~i~d~~~~~~~~------~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~ 265 (340)
T 4aow_A 194 DKLVKVWNLANCKLKT------NHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEGKHLYTLDGG-DIINALCFS 265 (340)
T ss_dssp TSCEEEEETTTTEEEE------EECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTTEEEEEEECS-SCEEEEEEC
T ss_pred CCEEEEEECCCCceee------EecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEeccCceeeeecCC-ceEEeeecC
Confidence 9999999999865433 3456889999999999999888877 7899999999999888877655 679999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcEEEEEe---------CC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 870 EDFIYLNYNSSASSLQIWLRGTQQKVGRIS---------AG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 870 pdg~~LaSgS~DG~I~IWdl~sg~~i~tl~---------~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|++.+++ ++.|+.|++||++++..+..+. +| ..|++++|+ |++|++|+.||+|+|||+
T Consensus 266 ~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 266 PNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp SSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 9987665 4569999999999988877765 33 349998876 779999999999999985
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=297.24 Aligned_cols=274 Identities=10% Similarity=0.052 Sum_probs=211.9
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCC---------CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQ---------SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTI 715 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~---------~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtI 715 (929)
.|.+.|.+++|+ +| +|++|+ |+++++||.... ..........|..+|++++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 578889999999 55 555555 888888874210 000111223467789999999985 68899999999
Q ss_pred EEEEccCCeEEEE---EEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CC--EE
Q 002389 716 GVWQMVQRKLELI---EVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QG--KI 784 (929)
Q Consensus 716 rIWDl~tg~~~~~---~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg--~l 784 (929)
++||+.+++.... ...+|...|.+ |+++++++++++.|++|++||+.. ....+.. ...|.+++|+ ++ .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999998864332 33478999986 678999999999999999999984 3444544 4569999997 44 47
Q ss_pred EEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 863 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V 863 (929)
++|+.|+.|++||+.+++..... ....+...+.++.++|+. .++++.+ .|++|++||.++++.+..+.+|...|
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~~~~~~~h~~~v 260 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQI----GCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSCVLSSAVHSQCV 260 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEEC----C----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--CCEEEECCSSCE
T ss_pred eeeccccccccccccccceeeee----ecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcEEEEEcCCCCCE
Confidence 88999999999999987654321 113346678999999854 4555555 78999999999999999999999999
Q ss_pred EEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--C-CEEEEEECCCcEEEeec
Q 002389 864 QAMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--N-DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 864 ~slafSpdg-~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g-~~LaSgs~DG~I~IWdi 928 (929)
++++|+|++ ++|++|+.||+|+|||..+++.+ .+.+| +.|++++|+ + .+|++||.||+|++|++
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 999999998 68999999999999999988765 56788 459999986 4 37889999999999985
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-30 Score=313.71 Aligned_cols=274 Identities=17% Similarity=0.210 Sum_probs=220.9
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEec-------cCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-------EHRKAVTSFSLFEPGESLLSGSADKTIG 716 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-------gH~~~Vtslafspdg~~LaSgs~DgtIr 716 (929)
.+|.+.|++++|+ +.+|++|+.||+|++||..+++. +..+. +|.+.|++++|+|+|++|+||+.|++|+
T Consensus 187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 264 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 4899999999999 34899999999999999988764 55663 7999999999999999999999999999
Q ss_pred EEEccCCeEEEEE------------------------------------------EeccCCCeEE--eccCCCEEEEEec
Q 002389 717 VWQMVQRKLELIE------------------------------------------VIATKEPIRK--LDTYGKTIFASTQ 752 (929)
Q Consensus 717 IWDl~tg~~~~~~------------------------------------------~~~h~~~V~s--~s~~g~~L~sgs~ 752 (929)
+||+.++++.... ..+|...|.+ ++++++++++++.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 9999887653221 2357777875 6789999999999
Q ss_pred CCeEEEEeCCCcee--ee--------------------------------------------------------------
Q 002389 753 GHRMKVIDSSRTLK--DI-------------------------------------------------------------- 768 (929)
Q Consensus 753 Dg~V~IWDl~~~~~--~l-------------------------------------------------------------- 768 (929)
|++|++||+..... .+
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 99999999762110 00
Q ss_pred ---------------------ccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEE
Q 002389 769 ---------------------YRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 825 (929)
Q Consensus 769 ---------------------~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~ 825 (929)
.....+.+++|+ +|+ +++|+.|+.|++||+.++..... .. ..|...|.++.+
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~----~~-~~h~~~v~~v~f 499 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV----KT-IVHPAEITSVAF 499 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE----EE-EECSSCEEEEEE
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee----ec-cCCCCceEEEEE
Confidence 001235677886 666 77899999999999987543222 12 457889999999
Q ss_pred cCCceEEEEEecCCCeEEEEECCC-CCeEEE--ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-EE-EEEeC
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHR-KPQISI--APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ-KV-GRISA 900 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~--l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~-~i-~tl~~ 900 (929)
+|++.++++.+ .|++|++||..+ ++.... ..+|...|++++|+|||++|++|+.|++|++||+.++. .+ ..+.+
T Consensus 500 spdg~~las~s-~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~ 578 (611)
T 1nr0_A 500 SNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA 578 (611)
T ss_dssp CTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS
T ss_pred CCCCCEEEEEc-CCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhcc
Confidence 99999998877 788999999876 554433 34599999999999999999999999999999998875 33 56667
Q ss_pred C--CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 901 G--SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 901 h--~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
| ..|++++|+ ++ |++|+.||+|++|++
T Consensus 579 h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 579 HAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp STTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred CcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 7 349998875 55 999999999999985
No 17
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-30 Score=290.65 Aligned_cols=280 Identities=12% Similarity=0.106 Sum_probs=233.7
Q ss_pred EeecCCCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCC----eeEEEEeccCCCcEEEEEEcCC----C---CEEEEEe
Q 002389 642 LEASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQS----AMLVWDVKEHRKAVTSFSLFEP----G---ESLLSGS 710 (929)
Q Consensus 642 l~~~~gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~----~~~i~~l~gH~~~Vtslafspd----g---~~LaSgs 710 (929)
.....+|.++|++++|++++|++|+.||+|++||+.+++ ...+..+.+|..+|++++|+|+ | ++|++|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 344569999999999999999999999999999999876 2246788899999999999999 9 9999999
Q ss_pred CCCeEEEEEccCCeE----EEEEEecc-----CCCeEE--ec----cCCCE-EEEEecCCeEEEEeCCC--------cee
Q 002389 711 ADKTIGVWQMVQRKL----ELIEVIAT-----KEPIRK--LD----TYGKT-IFASTQGHRMKVIDSSR--------TLK 766 (929)
Q Consensus 711 ~DgtIrIWDl~tg~~----~~~~~~~h-----~~~V~s--~s----~~g~~-L~sgs~Dg~V~IWDl~~--------~~~ 766 (929)
.||.|++||+.+++. .......| ...|.+ +. ++++. +++++.||.|++||+.. ...
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 999999999988763 12333455 477775 66 77999 99999999999999875 222
Q ss_pred -----eec--------cCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceeccccccccc---C---CCCeEEEEEc
Q 002389 767 -----DIY--------RSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL---Q---SKPINSLVVY 826 (929)
Q Consensus 767 -----~l~--------~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~---~---~~~I~sl~~~ 826 (929)
.+. +...+.+++|+ ++.+++++.|+.|++||+.++... ..+.. | ...+.++.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPL------YNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEE------EEEECCC---CCCCCEEEEEEC
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCcee------EEEeccccccccCCccceEEEC
Confidence 332 25569999998 557778999999999999886543 23344 6 8899999999
Q ss_pred CCceEEEEEecCC---CeEEEEECCCCCeEEEecC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 827 KDWLYSASSSVEG---SNIKEWRRHRKPQISIAPE-------------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 827 ~d~i~~~s~S~dD---gtI~IWDl~~~~~i~~l~~-------------h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
|++.++++.+ .| +.|++||+.++..+..+.+ |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 243 ~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 243 PQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp SSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEe-cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9988877766 56 8999999999999999988 99999999999999999999999999999999
Q ss_pred CCcEEEEEe------CC----------------CCeEEEEEc--C----------CEEEEEECCCcEEEeec
Q 002389 891 TQQKVGRIS------AG----------------SKITSLLTA--N----------DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 891 sg~~i~tl~------~h----------------~~Vtsvs~d--g----------~~LaSgs~DG~I~IWdi 928 (929)
+++.+..+. +| ..|++++|+ + ++|++|+.||.|++|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 999999999 65 349998886 4 59999999999999985
No 18
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-29 Score=273.26 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=227.6
Q ss_pred CCCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 646 HKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+|.++|++++|. +++|++|+.||.|++||+.++. ....+..|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 15 ~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 15 KGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW--LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp CCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE--EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred hCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE--EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 4899999999997 6699999999999999998764 467788999999999999999999999999999999987642
Q ss_pred --EEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeecc-CCCeEEEEEe---CCEEEEEECCCcEEEEEc
Q 002389 725 --LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-SKGIKSMSVV---QGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 725 --~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~-~~~V~sla~s---dg~llsgs~Dg~I~iwDl 798 (929)
.......+|..+|.++.++++.+++++.|+.|++||.......+.. ...+.++.+. +..+++++.|+.+++||.
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 1233445788999998889999999999999999995555555544 5568888874 445889999999999994
Q ss_pred cCCccceeccccccccc-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 799 SNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~-~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
.. .. ..+.. +...+.++.+++++. .++.+ .|+.|++||.+++..+..+.+|...|++++|+|++ .+++
T Consensus 173 ~~--~~------~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 241 (313)
T 3odt_A 173 DK--VI------KTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVS 241 (313)
T ss_dssp TE--EE------EEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEE
T ss_pred Cc--eE------EEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEE
Confidence 32 11 22233 688999999999988 44444 78999999999999999999999999999999999 5889
Q ss_pred EeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 878 NSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|+.||.|++||+.+++.+..+..|. .|++++|+ ++ +++++.||.|++|++
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 9999999999999999999999885 59999986 44 778999999999985
No 19
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=1.7e-29 Score=289.03 Aligned_cols=274 Identities=12% Similarity=0.225 Sum_probs=226.4
Q ss_pred CEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 002389 651 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 729 (929)
Q Consensus 651 ~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~ 729 (929)
.++.|+|+ ++.|++|. |++|+|||..+++...+..+.+|...|++++|+|+|++|++|+.||+|++||+.+++.. ..
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~-~~ 184 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-RN 184 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EE
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE-EE
Confidence 46789999 66777775 99999999999987556666789999999999999999999999999999999998754 34
Q ss_pred EeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCc---eeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCcc
Q 002389 730 VIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 730 ~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~ 803 (929)
..+|...+.++++++..+++++.|+.+++||.... ...+.. ...+..+.+. ++. +++++.|+.+++|+..++..
T Consensus 185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 56789999999999999999999999999998732 233333 4558888887 554 88899999999999987654
Q ss_pred ceecccccccccCCCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe--
Q 002389 804 REIKAPFKSWRLQSKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS-- 879 (929)
Q Consensus 804 ~~i~~~~~~~~~~~~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS-- 879 (929)
... .......+...|..+.++|... ...+.+..|++|++||..++.....+..| ..+.++.|+|+++.+++++
T Consensus 265 ~~~--~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 265 GWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp CSC--CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred cce--eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence 321 1234456788999999998643 33333457899999999999988877665 5689999999999998765
Q ss_pred CCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeecC
Q 002389 880 SASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdil 929 (929)
.||.|+|||+.+++++.++.+|. .|++++|+ |++|+||+.||+|+|||+.
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 79999999999999999999994 59999875 7899999999999999963
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.98 E-value=1.5e-29 Score=299.24 Aligned_cols=268 Identities=16% Similarity=0.282 Sum_probs=228.8
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..+|.++|++++|+ +.++++++.||+|++||..+.. +..+.+|..+|++++|+|+|++|++|+.||+|++||..
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~- 374 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence 34899999999999 3489999999999999987653 56788999999999999999999999999999999964
Q ss_pred CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCce-eeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 723 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL-KDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~-~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
++. .....+|...|.+ |+++++++++++.|+.|++||..... ..+.. ...|.+++|+ +++ +++++.|+.|++|
T Consensus 375 ~~~-~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w 453 (577)
T 2ymu_A 375 GQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453 (577)
T ss_dssp CCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCE-EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEE
Confidence 443 3344578888875 67899999999999999999987443 33333 4569999997 554 8889999999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~La 876 (929)
|...... ..+.+|...+.++.++|++.++++.+ .|++|++||. ++..+..+.+|...|++++|+|||++|+
T Consensus 454 ~~~~~~~-------~~~~~~~~~v~~~~~spd~~~las~~-~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 454 NRNGQLL-------QTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp ETTSCEE-------EEEECCSSCEEEEEECTTSCEEEEEE-TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred ECCCCEE-------EEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEE
Confidence 9754222 23457889999999999999988877 7899999996 5677888999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 877 YNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 877 SgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+++.||.|++||. +++.+.++.+|. .|++++|+ |++|+||+.||+|++||
T Consensus 525 s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 525 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999996 788999999994 59998875 77999999999999997
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.3e-29 Score=276.44 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=230.5
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.++|++++|+ +.+|++|+.||.|++||+.+++. +..+.+|.++|++++|+|++++|++++.||+|++||+.+++
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 899999999999 44899999999999999998754 78899999999999999999999999999999999999987
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecC-----CeEEEEeCCCc-------------eeeecc-C--CCeEEEEEe-
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQG-----HRMKVIDSSRT-------------LKDIYR-S--KGIKSMSVV- 780 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~D-----g~V~IWDl~~~-------------~~~l~~-~--~~V~sla~s- 780 (929)
...... +..++.+ +++++..+++++.+ +.|++||+... ...+.. . ..+.+++|+
T Consensus 108 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 108 CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 654443 6667764 67899999999999 99999998621 111111 1 278999997
Q ss_pred CCE-EEEEECCCcEEEEEccCC-ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC
Q 002389 781 QGK-IYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE 858 (929)
Q Consensus 781 dg~-llsgs~Dg~I~iwDl~tg-~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~ 858 (929)
++. +++++.||.|++||+.++ ... ..+..|...+.++.++|++.++++.+ .|+.|++||..++.....+.
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEE-
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEECCCCCEEEEec-CCceEEEEECCCCceeeeec-
Confidence 554 888999999999999873 322 33456788999999999998888776 78899999999998887776
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCC--------------cEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCC
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSAS--------------SLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETG 921 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG--------------~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG 921 (929)
+...+..++|+|+++++++++.++ .+++||..+++.+..+.+| ..|++++|+ +++|++|+.||
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 778899999999999999999988 8999999999999999998 459999885 77999999999
Q ss_pred cEEEeec
Q 002389 922 LIKGWIP 928 (929)
Q Consensus 922 ~I~IWdi 928 (929)
.|++|++
T Consensus 338 ~v~iw~~ 344 (369)
T 3zwl_B 338 FIRLHHF 344 (369)
T ss_dssp EEEEEEE
T ss_pred eEEEEEC
Confidence 9999985
No 22
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5e-29 Score=270.36 Aligned_cols=273 Identities=12% Similarity=0.213 Sum_probs=221.2
Q ss_pred EEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 002389 652 VTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 652 Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
.++|+|| +++|++| .|++|+|||+.+++......+.+|...|++++|+|+|++|+||+.||+|++||+.+++... ..
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-NM 105 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-Ee
Confidence 5679999 6677766 5999999999998765555667889999999999999999999999999999999998543 45
Q ss_pred eccCCCeEEeccCCCEEEEEecCCeEEEEeCCCc---eeeecc-CCCeEEEEEe-CC-EEEEEECCCcEEEEEccCCccc
Q 002389 731 IATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKDIYR-SKGIKSMSVV-QG-KIYIGCMDSSIQELAVSNNVER 804 (929)
Q Consensus 731 ~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~~-~~~V~sla~s-dg-~llsgs~Dg~I~iwDl~tg~~~ 804 (929)
.+|...+.++.+++..+++++.++.+++|+.... ...+.. ...+.++.+. ++ .+++++.|+.|++||+.+++..
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 5788899999999999999999999999998743 223333 4568888887 44 4889999999999999886543
Q ss_pred eecccccccccCCCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe--C
Q 002389 805 EIKAPFKSWRLQSKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS--S 880 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS--~ 880 (929)
... ......+...+..+.+++... ...+.+..+++|++||.......... .+...+..+.|+|++..+++++ .
T Consensus 186 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 186 WVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFA 262 (318)
T ss_dssp SCC--SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTT
T ss_pred ccc--eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcC
Confidence 221 123345677888888887643 33334457789999999888766544 4667899999999999887765 7
Q ss_pred CCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeecC
Q 002389 881 ASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 881 DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdil 929 (929)
||.|++||+.+++++.++.+| +.|++++|+ |++|+|||.||+|+|||+.
T Consensus 263 d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp TCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 999999999999999999999 459999886 7799999999999999973
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.3e-29 Score=291.28 Aligned_cols=269 Identities=15% Similarity=0.208 Sum_probs=231.3
Q ss_pred ecCCCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 644 ASHKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+.+|...|+++.++++++++|+.||+|++||..+++. +..+.+|.++|++++| ++++|++|+.||+|++||+.++
T Consensus 128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 34578899999999888999999999999999998754 7888999999999998 7889999999999999999998
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCce-----eeec-cCCCeEEEEEeCCEEEEEECCCcEEEEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL-----KDIY-RSKGIKSMSVVQGKIYIGCMDSSIQELA 797 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~-----~~l~-~~~~V~sla~sdg~llsgs~Dg~I~iwD 797 (929)
+.. ....+|...|.++..+++.+++++.||.|++||+.... ..+. +...|.++++.+..+++|+.||.|++||
T Consensus 204 ~~~-~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 204 EML-NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp CEE-EEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred cEE-EEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEE
Confidence 754 34457889999999899999999999999999987322 2222 3456999999777899999999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+.++... ..+..|...+.++.+++. ++++++ .||.|++||..++..+..+.+|...|.+++| ++.++++
T Consensus 283 ~~~~~~~------~~~~~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 283 TSTCEFV------RTLNGHKRGIACLQYRDR--LVVSGS-SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp TTTCCEE------EEEECCSSCEEEEEEETT--EEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred CCcCcEE------EEEcCCCCcEEEEEeCCC--EEEEEe-CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence 9886543 234567888999988643 444444 6899999999999999999999999999998 7899999
Q ss_pred EeCCCcEEEEECCCCc---------EEEEEeCCC-CeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 878 NSSASSLQIWLRGTQQ---------KVGRISAGS-KITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~---------~i~tl~~h~-~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
|+.||.|++||+.+++ .+..+.+|. .|++++|+++.|++|+.||+|++||+
T Consensus 352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence 9999999999987766 788999884 59999999999999999999999985
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=4.2e-29 Score=304.75 Aligned_cols=273 Identities=17% Similarity=0.246 Sum_probs=227.6
Q ss_pred CCCCCCEEEEEEe-C--CEEEEEECCCeEEEEECCCCCe---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 646 HKCSGAVTALIYY-K--GLLCSGFSDGSIKMWDIKKQSA---MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~--~~LaSGs~DGtIrIWD~~~~~~---~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
.+|.+.|++++|+ + ++|+||+.||+|++||+.+... .....+.+|...|++++|+|+|++|+||+.||+|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 3899999999998 3 4899999999999999976431 24567889999999999999999999999999999999
Q ss_pred ccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCcee-eec-----cCCCeEEEEEe-CC---EEEEE
Q 002389 720 MVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLK-DIY-----RSKGIKSMSVV-QG---KIYIG 787 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~-~l~-----~~~~V~sla~s-dg---~llsg 787 (929)
+.++... ....+|...|.+ |+++++.+++++.|++|++||...... .+. +...|.+++|+ ++ .+++|
T Consensus 459 ~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 459 LAAGVST-RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp TTTTEEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred CCCCcce-eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 9998754 345678999986 678999999999999999999864322 221 23459999997 43 48899
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
+.|+.|++||+.++... ..+.+|...|.++.++|++.++++.+ .|++|++||+.++..+..+.. ...|.+++
T Consensus 538 s~d~~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~ 609 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLR------STLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAEGKKLYSLEA-NSVIHALC 609 (694)
T ss_dssp ETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEETTTTEEEECCBC-SSCEEEEE
T ss_pred eCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceEEEecC-CCcEEEEE
Confidence 99999999999876543 33467889999999999999988877 789999999999988776654 46799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--------------------CeEEEEEc--CCEEEEEECCCcEEE
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS--------------------KITSLLTA--NDIVLCGTETGLIKG 925 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~--------------------~Vtsvs~d--g~~LaSgs~DG~I~I 925 (929)
|+|++.++++++ |+.|++||+.+++.+..+..+. .+++++|+ |++|++|+.||+|++
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999999988876 6669999999999888776431 16777775 789999999999999
Q ss_pred eec
Q 002389 926 WIP 928 (929)
Q Consensus 926 Wdi 928 (929)
|++
T Consensus 689 W~i 691 (694)
T 3dm0_A 689 WGI 691 (694)
T ss_dssp EEC
T ss_pred Eec
Confidence 996
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.4e-29 Score=281.06 Aligned_cols=281 Identities=9% Similarity=0.067 Sum_probs=228.1
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
..|.++|++++|+ +.+|++|+.||.|++||..+++...+..+.+|..+|++++|+|++++|++|+.||.|++||+.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 3689999999999 44899999999999999998864468889999999999999999999999999999999999988
Q ss_pred eEEEEE-EeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-----eeeec--cCCCeEEEEEe-CCE-EEEEECCC
Q 002389 724 KLELIE-VIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-----LKDIY--RSKGIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 724 ~~~~~~-~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-----~~~l~--~~~~V~sla~s-dg~-llsgs~Dg 791 (929)
+..... ...|...+.+ |+++++++++++.|+.|++||+... ...+. +...|.+++|+ ++. +++|+.||
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 754433 3567778875 6788999999999999999998742 22222 24569999997 554 88899999
Q ss_pred cEEEEEccCCccc------------eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC
Q 002389 792 SIQELAVSNNVER------------EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK 859 (929)
Q Consensus 792 ~I~iwDl~tg~~~------------~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h 859 (929)
.|++||+...... ........+..|...+.++.++|++.++++.+ .|+.|++||..++..+..+..|
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEccC
Confidence 9999997521100 00111234456788999999999998887776 7899999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CcE--E------------------------------------EEE-
Q 002389 860 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT--QQK--V------------------------------------GRI- 898 (929)
Q Consensus 860 ~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s--g~~--i------------------------------------~tl- 898 (929)
...|.+++|+|++.++++| .||.|++|++.+ ++. + ..+
T Consensus 244 ~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 9999999999999999888 899999999877 421 0 223
Q ss_pred eCC-CCeEEEEEc---C---CEEEEEECCCcEEEeec
Q 002389 899 SAG-SKITSLLTA---N---DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 899 ~~h-~~Vtsvs~d---g---~~LaSgs~DG~I~IWdi 928 (929)
.+| ..|++++|. | ++|++|+.||+|++|++
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 266 459998743 5 89999999999999985
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1e-28 Score=269.44 Aligned_cols=273 Identities=14% Similarity=0.220 Sum_probs=225.6
Q ss_pred CCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCee-EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 647 KCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAM-LVWDV--KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 647 gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~-~i~~l--~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
+|.++|++++|+ + .++++|+ ||.|++||+.++... ....+ .+|..+|++++|+|++++|++|+.||.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 799999999999 3 3788888 999999999875421 22333 3899999999999999999999999999999999
Q ss_pred CCeEEE-EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeec-cCCCeEEEEEe-CC-EEEEEECCCcE
Q 002389 722 QRKLEL-IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIY-RSKGIKSMSVV-QG-KIYIGCMDSSI 793 (929)
Q Consensus 722 tg~~~~-~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~-~~~~V~sla~s-dg-~llsgs~Dg~I 793 (929)
+++... .....|...+.+ ++++++.+++++.||.|++||+... ...+. +...+.+++++ ++ .+++++.|+.|
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 207 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcE
Confidence 876433 334467777775 6788999999999999999998742 33333 35679999997 55 48889999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
++||+.+++.... ..+...+.++.++|++.+.+..+ .++.|++||..++... .+..|...|.+++|+|+++
T Consensus 208 ~~~d~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 208 RSWDLREGRQLQQ-------HDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEEETTTTEEEEE-------EECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS
T ss_pred EEEECCCCceEee-------ecCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCC
Confidence 9999988764332 12467899999999998887766 6789999999988754 5678999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeecC
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWdil 929 (929)
++++++.||.|++||+.+++.+........|++++|+ +++|++|+.||.|++|+++
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999999999998777666779998876 7799999999999999974
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=4.2e-29 Score=300.71 Aligned_cols=272 Identities=15% Similarity=0.169 Sum_probs=227.8
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+.+.+.+++|+ ++ +|++++ +++|++||+.+++. ...+.+|.+.|++++|+|+|++|+||+.||+|+|||+.+++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~--~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD--TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC--CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc--CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 568889999999 44 888887 57999999987653 67889999999999999999999999999999999997654
Q ss_pred EE-EEEEeccCCCeEE--eccCCCEEEEEecC----CeEEEEeCCCceeeecc-CCCeEEEEEe-CC--EEEEEECCCcE
Q 002389 725 LE-LIEVIATKEPIRK--LDTYGKTIFASTQG----HRMKVIDSSRTLKDIYR-SKGIKSMSVV-QG--KIYIGCMDSSI 793 (929)
Q Consensus 725 ~~-~~~~~~h~~~V~s--~s~~g~~L~sgs~D----g~V~IWDl~~~~~~l~~-~~~V~sla~s-dg--~llsgs~Dg~I 793 (929)
.. .....+|..+|.+ |+++++.+++++.+ +.|++||.......+.. ...|.+++|+ ++ .+++|+.|++|
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v 172 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence 32 3345578888885 68999999998875 48999997766655555 4569999998 54 48999999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-------CCCCCeEEE
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-------EKGTTIQAM 866 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-------~h~~~V~sl 866 (929)
++||..+++.. ..+.+|...|.++.++|++.++++.+ .|++|++||..++.....+. +|...|.++
T Consensus 173 ~lwd~~~~~~~------~~l~~H~~~V~~v~fspdg~~las~s-~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 173 AIFEGPPFKFK------STFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp EEEETTTBEEE------EEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred EEEECCCCeEe------eeeccccCceEEEEECCCCCEEEEEE-CCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence 99998775432 34567899999999999999888877 78999999999988887774 799999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-------------------------------------------eCC-C
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI-------------------------------------------SAG-S 902 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl-------------------------------------------~~h-~ 902 (929)
+|+|||++|++|+.|++|++||+.+++.+.++ .+| .
T Consensus 246 ~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~ 325 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK 325 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence 99999999999999999999999988765544 355 3
Q ss_pred CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 903 KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 903 ~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.|++++|+ |++|++|+.||+|++||+
T Consensus 326 ~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 326 AITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 48898875 789999999999999985
No 28
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=279.08 Aligned_cols=274 Identities=13% Similarity=0.154 Sum_probs=219.1
Q ss_pred CCCCCCEEEEEEe-CC--EEEEEEC---CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC---CCEEEEEeCCCeEE
Q 002389 646 HKCSGAVTALIYY-KG--LLCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP---GESLLSGSADKTIG 716 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~--~LaSGs~---DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd---g~~LaSgs~DgtIr 716 (929)
.+|.+.|++++|+ ++ ++++|+. ||.|++||+.+++...... .+|..+|++++|+|+ |++|++|+.||.|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 4799999999999 33 5566766 9999999999887543333 389999999999999 68999999999999
Q ss_pred EEEccCCeEEEEEEeccCCCeEEe--------ccCCCEEEEEecCCeEEEEeCCC---ceeeecc-----CCCeEEEEE-
Q 002389 717 VWQMVQRKLELIEVIATKEPIRKL--------DTYGKTIFASTQGHRMKVIDSSR---TLKDIYR-----SKGIKSMSV- 779 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~s~--------s~~g~~L~sgs~Dg~V~IWDl~~---~~~~l~~-----~~~V~sla~- 779 (929)
+||+.+++.......+|...|.++ +++++.+++++.||.|++||+.. ....+.. ...+.++.+
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 999998763334455788888865 57888999999999999999884 2333332 236888884
Q ss_pred ---e-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC---CceEEEEEecCCCeEEEEECCCCC
Q 002389 780 ---V-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK---DWLYSASSSVEGSNIKEWRRHRKP 851 (929)
Q Consensus 780 ---s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~---d~i~~~s~S~dDgtI~IWDl~~~~ 851 (929)
+ ++. +++++.|+.|++||+.++..... ..+...+.++.++| ++.++++.+ .|+.|++||..++.
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-------TNIKNGVCSLEFDRKDISMNKLVATS-LEGKFHVFDMRTQH 245 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-------EECSSCEEEEEESCSSSSCCEEEEEE-STTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeee-------cCCCCceEEEEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCC
Confidence 3 554 88899999999999998765322 34578999999998 777777665 78999999987665
Q ss_pred eEEEe-----cCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCC-------------------cEEEEEeCCC-CeE
Q 002389 852 QISIA-----PEKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRGTQ-------------------QKVGRISAGS-KIT 905 (929)
Q Consensus 852 ~i~~l-----~~h~~~V~slafSpdg~-~LaSgS~DG~I~IWdl~sg-------------------~~i~tl~~h~-~Vt 905 (929)
....+ .+|...|++++|+|+++ ++++|+.||.|++||+.++ +.+..+.+|. .|+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 43333 38999999999999999 8999999999999998754 4677888884 599
Q ss_pred EEEEc--CCEEE-EEECCCcEEEeec
Q 002389 906 SLLTA--NDIVL-CGTETGLIKGWIP 928 (929)
Q Consensus 906 svs~d--g~~La-Sgs~DG~I~IWdi 928 (929)
+++|+ +++|+ +|+.||.|++|++
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 99986 66777 8999999999985
No 29
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.1e-29 Score=272.80 Aligned_cols=277 Identities=11% Similarity=0.141 Sum_probs=222.2
Q ss_pred ecCCCCCCEEEEEEe-C----CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 644 ASHKCSGAVTALIYY-K----GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 644 ~~~gH~~~Vtsl~fs-~----~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
...+|.+.|++++|+ + .+|++|+.||.|++||+.+........+.+|.++|++++|+|++++|++|+.||+|++|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 456899999999999 4 48999999999999999974334457888999999999999999999999999999999
Q ss_pred EccCCeEEEEEEeccCCCeEEe----ccCCCEEEEEecCCeEEEEeCC--CceeeeccCCCeEEEEEeCCEEEEEECCCc
Q 002389 719 QMVQRKLELIEVIATKEPIRKL----DTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVVQGKIYIGCMDSS 792 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~V~s~----s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~V~sla~sdg~llsgs~Dg~ 792 (929)
|+.+++... ...|..+|.++ .+++..+++++.||.|++||+. .....+..+..+.++.+....+++++.++.
T Consensus 114 d~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 3mmy_A 114 DLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG 191 (368)
T ss_dssp ETTTTEEEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred EcCCCCcee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence 999987543 55688888864 5677889999999999999987 345556667778888888888999999999
Q ss_pred EEEEEccCCccceecccccccccCCCCeEEEEEcCCce----EEEEEecCCCeEEEEECCCC---CeEEEecCCCC----
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL----YSASSSVEGSNIKEWRRHRK---PQISIAPEKGT---- 861 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i----~~~s~S~dDgtI~IWDl~~~---~~i~~l~~h~~---- 861 (929)
+.+|++......... ...........+...++.. ..++.+ .|+.|++||.+.. .....+.+|..
T Consensus 192 i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 192 LIVYQLENQPSEFRR----IESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EEEEECSSSCEEEEE----CCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred EEEEEeccccchhhh----ccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 999999875432211 1112233444444443321 144444 7899999999877 45566677765
Q ss_pred --------CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 862 --------TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 862 --------~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
.|++++|+|++++|++|+.||.|++||+.+++.+..+.+| .+|++++|+ |++|++|+.|+..+.|+
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 7999999999999999999999999999999999999988 459999886 77999999998665554
No 30
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.4e-28 Score=278.78 Aligned_cols=267 Identities=17% Similarity=0.256 Sum_probs=228.9
Q ss_pred CCCCCC-EEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 646 HKCSGA-VTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 646 ~gH~~~-Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+|.+. ++++.++++++++|+.||+|++||+.+++. +..+.+|.++|++++|+ ++.+++|+.||+|++||+.+++
T Consensus 115 ~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp ECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred cccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE--EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence 378876 588888899999999999999999998854 78899999999999997 5789999999999999999987
Q ss_pred EEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEeCCEEEEEECCCcEEEEEccCC
Q 002389 725 LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg 801 (929)
.. ....+|...|.++..+++.+++++.||.|++||+.. ....+.. ...+.++.+.+..+++|+.||.|++||+.++
T Consensus 191 ~~-~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~ 269 (445)
T 2ovr_B 191 CI-HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 269 (445)
T ss_dssp EE-EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT
T ss_pred EE-EEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC
Confidence 54 344578999999998999999999999999999873 3334433 5569999996666999999999999999886
Q ss_pred ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 802 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 802 ~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
... ..+.+|...+.++.+ ++.+.++.+ .|+.|++||..++..+..+.+|...+.++.++ +.++++|+.|
T Consensus 270 ~~~------~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 338 (445)
T 2ovr_B 270 TCL------HTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD 338 (445)
T ss_dssp EEE------EEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred cEe------EEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCC
Confidence 543 234567889999998 445555555 68899999999999999999999999988774 6799999999
Q ss_pred CcEEEEECCCCcEEEEEeC---C-CCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 882 SSLQIWLRGTQQKVGRISA---G-SKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 882 G~I~IWdl~sg~~i~tl~~---h-~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
|.|++||+.+++.+..+.. | ..|++++|++++|++|+.||.|++||+
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEEC
Confidence 9999999999999999986 4 449999999999999999999999985
No 31
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.7e-28 Score=269.41 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=228.0
Q ss_pred EeecCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCe-eEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q 002389 642 LEASHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA-MLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGV 717 (929)
Q Consensus 642 l~~~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~-~~i~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrI 717 (929)
+++..+|.+.|++++|+ +.+|++|+.||.|++||+.++.. .....+.+|..+|++++|+|+++ +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34556899999999999 45999999999999999987751 12445569999999999999999 9999999999999
Q ss_pred EEc-cCCeEEEEEEec--cCCCeEE--eccCCCEEEEEecCCeEEEEeCCC-----------ceeeeccCCCeEEEEEeC
Q 002389 718 WQM-VQRKLELIEVIA--TKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-----------TLKDIYRSKGIKSMSVVQ 781 (929)
Q Consensus 718 WDl-~tg~~~~~~~~~--h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~-----------~~~~l~~~~~V~sla~sd 781 (929)
||+ .+++. ....+ |...|.+ +.+ ++.+++++.|+.|++||+.. ....+.....+.+++++.
T Consensus 84 wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence 999 88764 34456 8888886 456 89999999999999999763 223344566799999986
Q ss_pred CEEEEEECCCcEEEEEccC-CccceecccccccccCCCCeEEEEEcC-CceEEEEEecCCCeEEEEECCCC------CeE
Q 002389 782 GKIYIGCMDSSIQELAVSN-NVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHRK------PQI 853 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~t-g~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~~~------~~i 853 (929)
+.+++++.|+.|++||+.+ +..... .....+...+.++.++| ++.+.++.+ .||.|++|+.+.. ...
T Consensus 161 ~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 161 SRLIVGMNNSQVQWFRLPLCEDDNGT----IEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCE----EEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTC
T ss_pred CcEEEEeCCCeEEEEECCccccccce----eeecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccc
Confidence 6699999999999999987 443211 12234577899999999 888877776 7899999998776 667
Q ss_pred EEecCCCC---------CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CC-eEEEEEcCCEEEEEECCCc
Q 002389 854 SIAPEKGT---------TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SK-ITSLLTANDIVLCGTETGL 922 (929)
Q Consensus 854 ~~l~~h~~---------~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~-Vtsvs~dg~~LaSgs~DG~ 922 (929)
..+..|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| .. |+++++++++|++|+.||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCc
Confidence 77777755 9999999999999999999999999999999999999987 44 9998888999999999998
No 32
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=7.1e-28 Score=277.67 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=226.1
Q ss_pred CCCCC-EEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 647 KCSGA-VTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 647 gH~~~-Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
+|.+. ++++.++++++++|+.||+|++||+.+++ .+..+.+|.++|++++|+|++ .+++|+.||+|++||+.+++.
T Consensus 119 ~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 119 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC 195 (464)
T ss_dssp CCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE
T ss_pred CCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE
Confidence 78777 58888889999999999999999999885 478899999999999999988 999999999999999999875
Q ss_pred EEEEEeccCCCeEEe--c--cCCCEEEEEecCCeEEEEeCCCce-------------------------eeecc-CCCeE
Q 002389 726 ELIEVIATKEPIRKL--D--TYGKTIFASTQGHRMKVIDSSRTL-------------------------KDIYR-SKGIK 775 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~--s--~~g~~L~sgs~Dg~V~IWDl~~~~-------------------------~~l~~-~~~V~ 775 (929)
. ....+|..+|.++ . +++.++++++.|++|++||+.... ..... ...+.
T Consensus 196 ~-~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (464)
T 3v7d_B 196 T-HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274 (464)
T ss_dssp E-EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE
T ss_pred E-EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE
Confidence 4 3445788888864 3 466899999999999999987321 11222 34577
Q ss_pred EEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 776 SMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 776 sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
++...+..+++|+.|+.|++||+.+++.. ..+.+|...+.++.+++++.++++++ .|+.|++||..++..+..
T Consensus 275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCL------YILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYT 347 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEE
Confidence 77666778999999999999999886543 23456789999999999988888777 788999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--eEEEEEcCCEEEEEECCCcEEEeec
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK--ITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~--Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
+.+|...|.+++|+ +.++++|+.||.|++||+.++........... +.++.++++++++|+ ||.|++||+
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 99999999999997 58999999999999999999888777764444 556677899999998 899999985
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.7e-28 Score=275.65 Aligned_cols=276 Identities=11% Similarity=0.074 Sum_probs=216.2
Q ss_pred CCCCCCEEEEEEe-C--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcc
Q 002389 646 HKCSGAVTALIYY-K--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~ 721 (929)
.+|.+.|++++|+ + .+|++|+.||+|+|||+.+++........+|.+.|++++|+| ++++|++|+.||+|++||+.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 4899999999999 3 499999999999999999887644444458999999999999 67889999999999999998
Q ss_pred CCeEEEEEE-eccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-eeeecc-CCCeEEEEEe-CC--EEEEEECCCcE
Q 002389 722 QRKLELIEV-IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-LKDIYR-SKGIKSMSVV-QG--KIYIGCMDSSI 793 (929)
Q Consensus 722 tg~~~~~~~-~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~-~~~V~sla~s-dg--~llsgs~Dg~I 793 (929)
++....... ..+...|.+ ++++++.+++++.|+.|++||+++. ...+.. ...|.+++|+ ++ .+++|+.|+.|
T Consensus 150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEE
Confidence 654322211 133456765 6789999999999999999999743 333433 5679999997 44 58889999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcC-CceEEEEEecCCCeEEEEECCCCCeEEEecCCC------------
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG------------ 860 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~------------ 860 (929)
++||+.++..... .... ..|...+.++.++| ++.++++.+ .|+.|++||+.++.....+.+|.
T Consensus 230 ~iwd~~~~~~~~~--~~~~-~~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (383)
T 3ei3_B 230 KLWDLRNIKDKNS--YIAE-MPHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA 305 (383)
T ss_dssp EEEEGGGCCSTTC--EEEE-EECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred EEEeCCCCCcccc--eEEE-ecCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEE
Confidence 9999987432110 0011 25788999999999 888888776 78899999998877655555442
Q ss_pred -----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CC-eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 861 -----TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SK-ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 861 -----~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--~~-Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
..+..++|+|++++ +|+.||.|++||+.+++.+.++.++ .. +..++|+ +++|++|+ ||.|++|++
T Consensus 306 ~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 306 TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 33445677777777 7789999999999999999999975 23 5555665 78999997 999999986
No 34
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=3.2e-29 Score=288.41 Aligned_cols=276 Identities=10% Similarity=0.067 Sum_probs=216.0
Q ss_pred CCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccC
Q 002389 647 KCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~t 722 (929)
+|...|+||+|+ +++||+|+.||+|+|||+.+++......+.+|.++|++++|+| ++.+|+||+.||+|++||+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 789999999998 3489999999999999998877656677789999999999998 688999999999999999987
Q ss_pred CeEEEEEEeccC--CCeE--EeccCCCEEEEEecCCeEEEEeCCC-ceeeecc-CCCeEEEEEe-CC--EEEEEECCCcE
Q 002389 723 RKLELIEVIATK--EPIR--KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-SKGIKSMSVV-QG--KIYIGCMDSSI 793 (929)
Q Consensus 723 g~~~~~~~~~h~--~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~-~~~V~sla~s-dg--~llsgs~Dg~I 793 (929)
+.... ....+. ..+. ++++++.++++|+.||.|++||+++ ....+.. ...|.+++|+ ++ .+++|+.|+.|
T Consensus 197 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v 275 (435)
T 4e54_B 197 NILRV-FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275 (435)
T ss_dssp CEEEE-EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred CceeE-EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCccee
Confidence 65432 222222 2333 4678999999999999999999984 3333433 4569999997 44 37789999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC------CeEEEE
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT------TIQAMA 867 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~------~V~sla 867 (929)
++||+.++...... .....|..+|.++.++|++.++++.+ .|++|++||..++.....+..|.. .+....
T Consensus 276 ~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 276 KIWDLRQVRGKASF---LYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp CEEETTTCCSSSCC---SBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred eEEecccccccceE---EEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999875533211 22356788999999999999988877 788999999998887777766643 234567
Q ss_pred EecCCCEEEEEe------------CCCcEEEEECCCCcEEEEEeC-C-CCeEEE-EE--cCCEEEEEECCCcEEEeec
Q 002389 868 VVEDFIYLNYNS------------SASSLQIWLRGTQQKVGRISA-G-SKITSL-LT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 868 fSpdg~~LaSgS------------~DG~I~IWdl~sg~~i~tl~~-h-~~Vtsv-s~--dg~~LaSgs~DG~I~IWdi 928 (929)
|+|++.++++++ .++.|++||..+++.+..+.. | ..|.++ +| +|++|++|+ |++|+||++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 788877777664 236799999999999988864 4 336665 34 578888876 889999986
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=8.4e-29 Score=273.28 Aligned_cols=279 Identities=11% Similarity=0.138 Sum_probs=221.3
Q ss_pred cCCCCCCEEEEEEeC------CEEEEEECCCeEEEEECCCCCeeEEEEec-----cCCCcEEEEEEcCC----CCEEEEE
Q 002389 645 SHKCSGAVTALIYYK------GLLCSGFSDGSIKMWDIKKQSAMLVWDVK-----EHRKAVTSFSLFEP----GESLLSG 709 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~------~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-----gH~~~Vtslafspd----g~~LaSg 709 (929)
..+|.++|++++|++ ..+++++.++.|++||..+++. +..+. .|...|++++|+|+ |++|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 358999999999993 2678888888999999997653 33333 36688999999999 6689999
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEE--ecc-CCCEEEEEecCCeEEEEeCCC--ceeee----ccCCCeEEEEEe
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSSR--TLKDI----YRSKGIKSMSVV 780 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~-~g~~L~sgs~Dg~V~IWDl~~--~~~~l----~~~~~V~sla~s 780 (929)
+.||+|++||+.+++... ...+|..+|.+ |++ ++..+++++.||.|++||+.. ....+ .+...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIK-HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCEEE-EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceEee-eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999999887543 34578888986 566 788999999999999999983 23333 235679999997
Q ss_pred -CC-EEEEEECCCcEEEEEccCCccceecc----------------------cccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 781 -QG-KIYIGCMDSSIQELAVSNNVEREIKA----------------------PFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 781 -dg-~llsgs~Dg~I~iwDl~tg~~~~i~~----------------------~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
++ .+++++.||.|++||+.+++...... .......|...|.++.++++ ++++.+
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGD--LILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETT--EEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCC--EEEEEe
Confidence 55 48899999999999998764321110 01112237888999999833 445444
Q ss_pred cCCCeEEEEECCCCCe--------------EEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc----EEE
Q 002389 837 VEGSNIKEWRRHRKPQ--------------ISIAPEKGTTIQAMAVVED--FIYLNYNSSASSLQIWLRGTQQ----KVG 896 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~--------------i~~l~~h~~~V~slafSpd--g~~LaSgS~DG~I~IWdl~sg~----~i~ 896 (929)
.|+.|++||..++.. +..+.+|...|++++|+|+ +++|++|+.||.|++||+.+++ ...
T Consensus 249 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 249 -CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp -SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred -cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 689999999877643 7778889999999999999 9999999999999999999876 455
Q ss_pred EEeCC---CCeEEEEEc--CCEEEEEECCCcEEEeecC
Q 002389 897 RISAG---SKITSLLTA--NDIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 897 tl~~h---~~Vtsvs~d--g~~LaSgs~DG~I~IWdil 929 (929)
.+.+| ..|++++|+ +++|++|+.||.|++||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 78877 459999986 7799999999999999973
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=276.16 Aligned_cols=238 Identities=15% Similarity=0.182 Sum_probs=193.8
Q ss_pred CCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLV--WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i--~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.|...|++++|+ ++.|++|+.||+|+|||+.+++.... ..+.+|.+.|++++|+|+|++|+||+.||+|++||+.++
T Consensus 80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 467889999999 67999999999999999998765322 345689999999999999999999999999999999998
Q ss_pred eEEEEEEeccCCCeEE--eccCCC-EEEEEecCCeEEEEeCCC--ceeeec---cCCCeEEEEEe--CCE-EEEEECCCc
Q 002389 724 KLELIEVIATKEPIRK--LDTYGK-TIFASTQGHRMKVIDSSR--TLKDIY---RSKGIKSMSVV--QGK-IYIGCMDSS 792 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~-~L~sgs~Dg~V~IWDl~~--~~~~l~---~~~~V~sla~s--dg~-llsgs~Dg~ 792 (929)
++. ....+|...|.+ |++++. .+++++.|++|++||++. ....+. ....+.+++|+ ++. +++|+.||.
T Consensus 160 ~~~-~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 160 VVL-SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EEE-EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred cEE-EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 754 345578999986 456664 788999999999999873 333332 23458899996 444 678999999
Q ss_pred EEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
|++||+.+++.. ..+.+|...|+++.++|++. ++++.+ .|++|++||..++++. .+.+|.+.|++++|+|+
T Consensus 239 v~~wd~~~~~~~------~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 239 VSLVDTKSTSCV------LSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPL 310 (344)
T ss_dssp EEEEESCC--CC------EEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCCEEE-EECCCSSCEEEEEECSS
T ss_pred EEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCC
Confidence 999999886543 34567899999999999874 566666 7899999999998865 46799999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCCCc
Q 002389 872 FI-YLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 872 g~-~LaSgS~DG~I~IWdl~sg~ 893 (929)
+. +|++||.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 86 57799999999999987653
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=7.1e-28 Score=284.96 Aligned_cols=269 Identities=16% Similarity=0.295 Sum_probs=228.7
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..+|..+|++++|+ +.++++++.|++|++||.... ....+.+|.++|++++|+|+++.+++++.||+|++||...
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 34899999999999 348999999999999997653 3678899999999999999999999999999999999876
Q ss_pred CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-eeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEE
Q 002389 723 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-LKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQEL 796 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iw 796 (929)
... ....+|...+.+ ++++++.+++++.|+.+++||.... ...+.. ...|.+++|+ +|+ +++++.|+.|++|
T Consensus 335 ~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 335 QHL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp CEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred Cee--EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence 543 344567788875 6789999999999999999998743 333333 4569999998 666 8889999999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~La 876 (929)
|...... ..+..|...+..+.++|++.++++.+ .|++|++||.. +..+..+.+|...|++++|+||+++|+
T Consensus 413 ~~~~~~~-------~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 413 NRNGQLL-------QTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp CTTCCEE-------EEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred eCCCCEE-------EEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 9654211 33467889999999999998888776 78999999975 556778889999999999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 877 YNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 877 SgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+++.|+.|++||. +++.+.++.+|. .|++++|+ |++|++|+.||.|++||.
T Consensus 484 s~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 484 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 9999999999995 788999999994 59998875 789999999999999983
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-28 Score=273.47 Aligned_cols=273 Identities=12% Similarity=0.132 Sum_probs=224.1
Q ss_pred CCCCCCEEEEEEe--CC-EEEEEECCCeEEEEEC----CCCCe----eEEEEecc----------CCCcEEEEEEcCCCC
Q 002389 646 HKCSGAVTALIYY--KG-LLCSGFSDGSIKMWDI----KKQSA----MLVWDVKE----------HRKAVTSFSLFEPGE 704 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~----~~~~~----~~i~~l~g----------H~~~Vtslafspdg~ 704 (929)
+.|.++|++++|+ +. +|++|+.||.|++||+ .+++. .....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 3578999999999 44 8999999999999999 77651 01333333 688999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeeccC-CC------
Q 002389 705 SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYRS-KG------ 773 (929)
Q Consensus 705 ~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~~-~~------ 773 (929)
+|++|+.||.|++|| .+++. ......|..+|.+ |+++++++++++.|+.|++||+... ...+..+ ..
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGAL-LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCE-EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEe-CCCCe-eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 999999999999999 45543 3344568888886 5688999999999999999999732 2222221 22
Q ss_pred ---------eEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 002389 774 ---------IKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 843 (929)
Q Consensus 774 ---------V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~ 843 (929)
+.++.++ ++.+++++.+|.|++||+.++... ..+..|...+.++.++|++.++++.+ .|+.|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~ 272 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT------GKLIGHHGPISVLEFNDTNKLLLSAS-DDGTLR 272 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS------EEECCCSSCEEEEEEETTTTEEEEEE-TTSCEE
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee------eeeccCCCceEEEEECCCCCEEEEEc-CCCEEE
Confidence 7888887 888999999999999999886443 23456788999999999988877776 788999
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECC
Q 002389 844 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTET 920 (929)
Q Consensus 844 IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~D 920 (929)
+||..++.....+.+|...|.+++|+|++ ++++++.||.|++||+.+++.+..+..| ..|++++|+ +++|++|+.|
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 99999998888899999999999999999 9999999999999999999999999987 459998876 7799999999
Q ss_pred CcEEEeec
Q 002389 921 GLIKGWIP 928 (929)
Q Consensus 921 G~I~IWdi 928 (929)
|.|++|++
T Consensus 352 g~i~i~~~ 359 (425)
T 1r5m_A 352 GQVNVYDL 359 (425)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 99999985
No 39
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=4.4e-28 Score=265.33 Aligned_cols=239 Identities=15% Similarity=0.208 Sum_probs=199.7
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEe
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWD 760 (929)
...++.+|.+.|++++|+|++++|++|+.||+|++||+.++... .....|..+|.+ |.++++++++++.|++|++||
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee-EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 46788999999999999999999999999999999999988754 344567778875 679999999999999999999
Q ss_pred CCC--ceeeecc-CCCeEEEEEe-CC-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC-CceEEEE
Q 002389 761 SSR--TLKDIYR-SKGIKSMSVV-QG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSAS 834 (929)
Q Consensus 761 l~~--~~~~l~~-~~~V~sla~s-dg-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s 834 (929)
+.. ....+.. ...|.+++|+ ++ .+++|+.|++|++||+.++.... ..+.+|...|.++.++| ++..+++
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-----QTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE-----EEECCCCSCEEEEEECTTCTTEEEE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh-----hhhcccCCcEEEEEECCCCCCEEEE
Confidence 873 3444444 4569999997 55 48899999999999998753221 34567899999999998 5666666
Q ss_pred EecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc
Q 002389 835 SSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVVE--DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA 910 (929)
Q Consensus 835 ~S~dDgtI~IWDl~~~~~i~-~l~~h~~~V~slafSp--dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d 910 (929)
.+ .|++|++||+..+.... ...+|...+..+.|+| ++.+|++|+.||+|++||+.+++++.++.+|. .|++++|+
T Consensus 159 gs-~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 159 GC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (304)
T ss_dssp EE-TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred Ee-CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC
Confidence 66 78999999997765443 3456778899999986 78899999999999999999999999999994 59988876
Q ss_pred --CCEEEEEECCCcEEEeec
Q 002389 911 --NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 911 --g~~LaSgs~DG~I~IWdi 928 (929)
+++|++|+.||+|++||+
T Consensus 238 p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 238 PTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp SSSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEEC
Confidence 669999999999999985
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-28 Score=273.02 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=223.4
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.+.|++++|+ +.+|++|+.||.|++||.. + ..+..+.+|..+|++++|+|++++|++++.||.|++||+.+++
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 478899999999 4499999999999999943 3 3477889999999999999999999999999999999999887
Q ss_pred EEEEEEeccCCC---------------eEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeec-cCCCeEEEEEe-CC-
Q 002389 725 LELIEVIATKEP---------------IRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIY-RSKGIKSMSVV-QG- 782 (929)
Q Consensus 725 ~~~~~~~~h~~~---------------V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~-~~~~V~sla~s-dg- 782 (929)
...... .+... +.+ +.++ ..+++++.+|.|++||+.. ....+. +...|.+++|+ ++
T Consensus 183 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 183 VMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp EEEEEC-CC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred EEEEee-ccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 544332 22222 443 4444 5789999999999999884 233333 35679999998 55
Q ss_pred EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC
Q 002389 783 KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT 862 (929)
Q Consensus 783 ~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~ 862 (929)
.+++++.|+.|++||+.++... ..+..|...+.++.++|++ ..++.+ .|+.|++||+.++..+..+..|...
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQ------NCFYGHSQSIVSASWVGDD-KVISCS-MDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCS------EEECCCSSCEEEEEEETTT-EEEEEE-TTSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEEEcCCCEEEEEECCCCccc------eEecCCCccEEEEEECCCC-EEEEEe-CCCcEEEEECCCCcEeEecccCCcc
Confidence 4888999999999999886543 2335678899999999998 555555 7899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCc--------------------EEEEEeCC--C-CeEEEEEc--CCEEEEE
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ--------------------KVGRISAG--S-KITSLLTA--NDIVLCG 917 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl~sg~--------------------~i~tl~~h--~-~Vtsvs~d--g~~LaSg 917 (929)
|.+++|+|++++|++|+.||.|++||+.+++ .+..+..| . .|++++|+ +++|++|
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999999999999999999999999888 89999988 5 79999986 6799999
Q ss_pred ECCCcEEEeec
Q 002389 918 TETGLIKGWIP 928 (929)
Q Consensus 918 s~DG~I~IWdi 928 (929)
+.||.|++|++
T Consensus 413 ~~dg~i~iw~~ 423 (425)
T 1r5m_A 413 YSLQEGSVVAI 423 (425)
T ss_dssp ESSSCCEEEEC
T ss_pred ecCceEEEEee
Confidence 99999999986
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.5e-30 Score=285.86 Aligned_cols=241 Identities=8% Similarity=0.041 Sum_probs=188.6
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.|.++|++++|+ +.+|++|+.||.|+|||+.++....+..+.+|.++|++++|+|++++|++|+.||+|++||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 467899999999 448999999999999999987444577889999999999999999999999999999999998876
Q ss_pred -E-EEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc-----eeeec--cCCCeEEEEEe-CCE-EEEEECCC
Q 002389 725 -L-ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT-----LKDIY--RSKGIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 725 -~-~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~-----~~~l~--~~~~V~sla~s-dg~-llsgs~Dg 791 (929)
. ......+|...|.+ |+++++.+++++.|+.|++||+... ...+. +...|.+++|+ ++. +++|+.|+
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 1 12334568888886 5678999999999999999999842 44444 35669999998 554 88899999
Q ss_pred cEEEEEccCCccce------------ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe----EEE
Q 002389 792 SIQELAVSNNVERE------------IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ----ISI 855 (929)
Q Consensus 792 ~I~iwDl~tg~~~~------------i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~----i~~ 855 (929)
.|++||+..+.... .......+ .|...+.++.++|++.++++.+ .|++|++||..++.. +..
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCC
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEe
Confidence 99999996432110 11112333 7788999999999998888776 789999999998876 777
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
+.+|...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 88999999999999999999999866655 66543
No 42
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=1.3e-27 Score=265.86 Aligned_cols=238 Identities=11% Similarity=0.106 Sum_probs=205.8
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEe
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWD 760 (929)
...++.+|.++|++++|+|++++|+||+.||+|++||+.+++... ....|...|.+ |+++++++++++.|+.+++||
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 467889999999999999999999999999999999999887543 34567777774 789999999999999999999
Q ss_pred CCCc------eeeecc-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEE
Q 002389 761 SSRT------LKDIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYS 832 (929)
Q Consensus 761 l~~~------~~~l~~-~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~ 832 (929)
+... ...+.. ...|.++.|+ ++.+++++.|+.|++||+.++... ..+.+|...|.++.++|++.++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT------TTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE------EEEcCCCCceEEEEECCCCCEE
Confidence 8732 122233 4568999997 888999999999999999887543 2346788999999999999888
Q ss_pred EEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC---CeEEEEE
Q 002389 833 ASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS---KITSLLT 909 (929)
Q Consensus 833 ~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~---~Vtsvs~ 909 (929)
++.+ .|++|++||+.++.....+.+|...|++++|+|++++|++|+.||+|++||+.+++.+..+..+. .|++++|
T Consensus 200 ~sg~-~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 200 VSGA-CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EEEE-TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEe-CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence 8777 78999999999999999999999999999999999999999999999999999999888876442 4899887
Q ss_pred c--CCEEEEEECCCcEEEeec
Q 002389 910 A--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 910 d--g~~LaSgs~DG~I~IWdi 928 (929)
+ |++|++|+.||.|++||+
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEET
T ss_pred CCCCCEEEEECCCCeEEEEEc
Confidence 6 789999999999999985
No 43
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=1.7e-28 Score=280.75 Aligned_cols=234 Identities=17% Similarity=0.265 Sum_probs=202.9
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|.+.|++++|+ +.+|++|+.||+|++||+.+.+ .+.++.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC--EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 3899999999998 4499999999999999998875 47889999999999999999999999999999999999998
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEeC-----------------
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVVQ----------------- 781 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~sd----------------- 781 (929)
.+.. ...+|...|.+ +++++..+++++.|++|++||+.. ....+.. ...|.+++|+.
T Consensus 225 ~~~~-~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 225 YCVK-TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp CEEE-EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred cEEE-EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccc
Confidence 7543 34578888875 568899999999999999999873 3333433 45699999862
Q ss_pred ----C-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe
Q 002389 782 ----G-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA 856 (929)
Q Consensus 782 ----g-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l 856 (929)
| .+++|+.|+.|++||+.++... ..+.+|...|.++.++|++.++++++ .|++|++||..++..+..+
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~~~------~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL------MTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTEEE------EEEECCSSCEEEEEECSSSSCEEEEE-TTTEEEEECCTTSCCCEEE
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCceE------EEEECCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEE
Confidence 3 4889999999999999987543 33467889999999999998888877 7899999999999989999
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 857 PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 857 ~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.+|...|++++|+|++.+|++|+.||+|++|+.
T Consensus 377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999999999986
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=281.33 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=215.5
Q ss_pred EEEeecCCCCCCEEEEEEeC-C--EEEEEECCCeEEEEECCC---CCe-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 640 QILEASHKCSGAVTALIYYK-G--LLCSGFSDGSIKMWDIKK---QSA-MLVWDVKEHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 640 ~~l~~~~gH~~~Vtsl~fs~-~--~LaSGs~DGtIrIWD~~~---~~~-~~i~~l~gH~~~Vtslafspdg~~LaSgs~D 712 (929)
.+..+..+|.++|++++|++ + +|++|+.||+|+|||+.+ +.. .....+ +|.++|++++|+|++++|++|+.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 33344468999999999986 3 899999999999999876 321 112333 599999999999999999999999
Q ss_pred CeEEEEEcc---CCeEEEEEE------e---c--cCCCeEE----eccCCCEEEEEecCCeEEEEeCCC--ceeeecc--
Q 002389 713 KTIGVWQMV---QRKLELIEV------I---A--TKEPIRK----LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-- 770 (929)
Q Consensus 713 gtIrIWDl~---tg~~~~~~~------~---~--h~~~V~s----~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-- 770 (929)
|+|++||+. +++...... . . +...+.+ +.+++..+++++.|+.|++||+.. ....+..
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999995 444322111 0 1 3344444 336788999999999999999973 3444443
Q ss_pred -CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccc-cCCCCeEEEEEcC----CceEEEEEecCCCeE
Q 002389 771 -SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWR-LQSKPINSLVVYK----DWLYSASSSVEGSNI 842 (929)
Q Consensus 771 -~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~-~~~~~I~sl~~~~----d~i~~~s~S~dDgtI 842 (929)
...|.+++|+ ++. +++|+.||.|++||+.++..... +. .+..+|.++.++| ++.++++.+ .|+.|
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~s~~~~~l~s~~-~dg~i 285 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS------WSFGDHAPITHVEVCQFYGKNSVIVVGGS-SKTFL 285 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE------EBCTTCEEEEEEEECTTTCTTEEEEEEES-TTEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE------EecCCCCceEEEEeccccCCCccEEEEEc-CCCcE
Confidence 4679999997 555 88899999999999998654322 22 4567899996654 566777665 78899
Q ss_pred EEEECCCCCeEEEecC--------------------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 002389 843 KEWRRHRKPQISIAPE--------------------------KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 896 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~--------------------------h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~ 896 (929)
++||+.++.....+.+ |...|++++|+ ++++|++|+.||.|++||+.+++.+.
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 9999998887776654 44568889999 78999999999999999999998887
Q ss_pred EEeC-------------------------------------C-CCeEEEEEc----CCEEEEEECCCcEEEee
Q 002389 897 RISA-------------------------------------G-SKITSLLTA----NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 897 tl~~-------------------------------------h-~~Vtsvs~d----g~~LaSgs~DG~I~IWd 927 (929)
.+.+ | ..|+++++. +.+|++|+.||.|+||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7775 4 348888865 34999999999999996
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.3e-27 Score=260.65 Aligned_cols=243 Identities=13% Similarity=0.170 Sum_probs=194.4
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEc
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQM 720 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl 720 (929)
..+|.+.|++++|+ +.+|++|+.||+|+|||+.+.....+.++.+|.++|++++|+|+ +++|+||+.||+|++||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 45899999999999 44999999999999999986544457889999999999999864 889999999999999999
Q ss_pred cCCeEEE-EEEeccCCCeEEe--ccC--CCEEEEEecCCeEEEEeCCCc----eeeec-cCCCeEEEEEe-C--------
Q 002389 721 VQRKLEL-IEVIATKEPIRKL--DTY--GKTIFASTQGHRMKVIDSSRT----LKDIY-RSKGIKSMSVV-Q-------- 781 (929)
Q Consensus 721 ~tg~~~~-~~~~~h~~~V~s~--s~~--g~~L~sgs~Dg~V~IWDl~~~----~~~l~-~~~~V~sla~s-d-------- 781 (929)
.+++... .....|...|.++ +|+ +..+++++.|++|++||+... ...+. +...|.+++|+ +
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence 8875322 2344688888864 565 789999999999999998742 12222 34569999997 3
Q ss_pred ------CEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc---eEEEEEecCCCeEEEEECCCCC-
Q 002389 782 ------GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW---LYSASSSVEGSNIKEWRRHRKP- 851 (929)
Q Consensus 782 ------g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~---i~~~s~S~dDgtI~IWDl~~~~- 851 (929)
..+++|+.|+.|++||+.++..... ....+.+|...|.+++++|++ .++++.+ .|++|++||.+...
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~--~~~~l~~H~~~V~~v~~sp~~~~~~~las~s-~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYV--LESTLEGHSDWVRDVAWSPTVLLRSYMASVS-QDRTCIIWTQDNEQG 241 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEETTTTEEE--EEEEECCCSSCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESSTTS
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcCCCceEE--EEEEecCCCCceEEEEECCCCCCceEEEEEE-CCCcEEEEEeCCCCC
Confidence 2588999999999999987542111 113456789999999999984 6677766 78999999987642
Q ss_pred --eEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 852 --QISIA--PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 852 --~i~~l--~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
....+ .+|...|.+++|+|+|++|++++.||+|++|+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 22333 4678899999999999999999999999999965
No 46
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=264.78 Aligned_cols=236 Identities=11% Similarity=0.108 Sum_probs=204.4
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..+|...|++++|+ +.++++|+.||+|++||+.+++ .+..+..|...+.+++|+|++++|++|+.||.|++||+.+
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 35899999999999 3489999999999999999885 4778889999999999999999999999999999999998
Q ss_pred CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEE
Q 002389 723 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~i 795 (929)
++... ....+...+.+ ++++++++++++.||.|++||+.. ....+.. ...|.+++|+ ++. +++|+.|+.|++
T Consensus 154 ~~~~~-~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 154 GKKEY-SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232 (321)
T ss_dssp CSEEE-EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred CceeE-EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEE
Confidence 87543 34456666764 689999999999999999999873 3334443 4569999997 665 888999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
||+.++... ..+.+|...|.++.++|++.++++.+ .|++|++||+.++..+..+.+|...|.+++|+|++++|
T Consensus 233 wd~~~~~~~------~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 233 YDVQHANLA------GTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKI 305 (321)
T ss_dssp EETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EECCCccee------EEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 999876543 33467889999999999999888877 78999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECC
Q 002389 876 NYNSSASSLQIWLRG 890 (929)
Q Consensus 876 aSgS~DG~I~IWdl~ 890 (929)
++++.||+|++||..
T Consensus 306 ~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 306 VSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTCCEEEEECC
T ss_pred EEEeCCCeEEEEeCC
Confidence 999999999999963
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-27 Score=271.09 Aligned_cols=272 Identities=10% Similarity=0.102 Sum_probs=222.0
Q ss_pred CCCC--CEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSG--AVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~--~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+|.+ .+.++.|+++.+++++.||.|++||..+++.. ..+. .|.+.|++++|+|++++|++|+.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS--ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE--EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe--EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 4444 46678888888899999999999999998753 3333 48999999999999999999999999999999988
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC---ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR---TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELA 797 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~---~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwD 797 (929)
+... ...+|...|.++.++++.+++++.||.|++||+.. ....+.. ...|.+++|+ ++. +++|+.|+.|++||
T Consensus 167 ~~~~-~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 167 TKLR-TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp CEEE-EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEE-EecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 7543 44578999999988999999999999999999972 2333333 5569999998 554 88899999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe--cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS--VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S--~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
+.++.... .+..|...+.++.++|++...+..+ ..|+.|++||..++.....+. |...|.+++|+|+++++
T Consensus 246 ~~~~~~~~------~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 246 ARSSIPKF------TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEI 318 (401)
T ss_dssp TTCSSEEE------EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEE
T ss_pred CCCCCccE------EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeE
Confidence 98855432 3356788999999999754443333 268999999999998887775 56789999999999999
Q ss_pred EEE--eCCCcEEEEECCCCcEEE--EEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 876 NYN--SSASSLQIWLRGTQQKVG--RISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 876 aSg--S~DG~I~IWdl~sg~~i~--tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+++ +.||.|++||+.+++... .+.+| ..|++++|+ +++|++|+.||.|++|++
T Consensus 319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp EEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred EEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 994 489999999999876644 46677 459988876 779999999999999986
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.1e-26 Score=267.14 Aligned_cols=267 Identities=14% Similarity=0.231 Sum_probs=225.9
Q ss_pred CCCCCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 646 HKCSGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
.+|.+.|++++|+++++++|+.||+|++||+.+++ .+..+.+|..+|.+++|+ ++.+++|+.||+|++||+.+++.
T Consensus 156 ~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 156 VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE
T ss_pred cCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCc--EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE
Confidence 48999999999999999999999999999999885 478889999999999995 57799999999999999998875
Q ss_pred EEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEeCCEEEEEECCCcEEEEEccCCc
Q 002389 726 ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~ 802 (929)
.. ...+|..++.++..+++.+++++.||.|++||+.. ....+.. ...|.++.+.+..+++|+.|+.|++||+.+++
T Consensus 232 ~~-~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 232 LH-VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EE-EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred EE-EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC
Confidence 43 44578899999988999999999999999999873 3334443 45699999966679999999999999998876
Q ss_pred cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---CCCCeEEEEEecCCCEEEEEe
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~---h~~~V~slafSpdg~~LaSgS 879 (929)
... .+..|...+..+.+.++ +.++++ .||.|++||..++.....+.+ |...|.+++|+ +.++++|+
T Consensus 311 ~~~------~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 379 (445)
T 2ovr_B 311 CIH------TLTGHQSLTSGMELKDN--ILVSGN-ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS 379 (445)
T ss_dssp EEE------EECCCCSCEEEEEEETT--EEEEEE-TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE
T ss_pred EEE------EEcCCcccEEEEEEeCC--EEEEEe-CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe
Confidence 432 33567788888887654 444444 689999999999998888876 88899999995 68999999
Q ss_pred CCCcEEEEECCCCcEEEEEe-----CC-CCeEEEEEc--CCEEEEEECCCc----EEEeec
Q 002389 880 SASSLQIWLRGTQQKVGRIS-----AG-SKITSLLTA--NDIVLCGTETGL----IKGWIP 928 (929)
Q Consensus 880 ~DG~I~IWdl~sg~~i~tl~-----~h-~~Vtsvs~d--g~~LaSgs~DG~----I~IWdi 928 (929)
.||.|++||+.+++.+..+. .| +.|++++|+ +.++++|+.||+ |.|||.
T Consensus 380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 99999999999999998883 33 459999987 558999999998 999984
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-29 Score=279.78 Aligned_cols=276 Identities=12% Similarity=0.133 Sum_probs=222.0
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCC--CeeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcc
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQ--SAMLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~--~~~~i~~l~gH~~~Vtslafspd-g~~LaSgs~DgtIrIWDl~ 721 (929)
+|.+.|++++|+ +.+|++|+.||.|++||+.+. ....+..+.+|.++|++++|+|+ +++|++|+.||+|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 589999999998 348999999999999999872 11357888999999999999998 8899999999999999998
Q ss_pred CCe------EEEE--EEeccCCCeEE--eccC-CCEEEEEecCCeEEEEeCCC--ceeeecc-------CCCeEEEEEe-
Q 002389 722 QRK------LELI--EVIATKEPIRK--LDTY-GKTIFASTQGHRMKVIDSSR--TLKDIYR-------SKGIKSMSVV- 780 (929)
Q Consensus 722 tg~------~~~~--~~~~h~~~V~s--~s~~-g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-------~~~V~sla~s- 780 (929)
+++ .... ....|...|.+ |+++ +..+++++.|+.|++||+.. ....+.. ...+.+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 875 2211 12356777775 5676 67999999999999999984 2333333 4569999998
Q ss_pred CC--EEEEEECCC---cEEEEEccCCccceecccccccc-cCCCCeEEEEEcC-CceEEEEEecCCCeEEEEECCCCCeE
Q 002389 781 QG--KIYIGCMDS---SIQELAVSNNVEREIKAPFKSWR-LQSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 781 dg--~llsgs~Dg---~I~iwDl~tg~~~~i~~~~~~~~-~~~~~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
++ .+++++.|+ .|++||+.++.. +...+. .|...+.++.++| ++.++++.+ .|+.|++||+.++..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDNTVLLWNPESAEQL 298 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSSEEEEECSSSCCEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCCCeEEEEe-CCCCEEEeeCCCCccc
Confidence 54 488899998 999999987532 123445 6889999999998 777777776 6899999999999999
Q ss_pred EEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEEeC--------------------------------
Q 002389 854 SIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRISA-------------------------------- 900 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg-~~LaSgS~DG~I~IWdl~sg~~i~tl~~-------------------------------- 900 (929)
..+.+|...|.+++|+|++ .++++++.||.|++|++.++........
T Consensus 299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA 378 (416)
T ss_dssp EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence 9999999999999999999 8999999999999999887654221100
Q ss_pred ---C-CCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 901 ---G-SKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 901 ---h-~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
+ .++++ ++++|++|++|+.||+|+||++
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 2 23545 4456889999999999999986
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=7.2e-28 Score=271.54 Aligned_cols=274 Identities=12% Similarity=0.059 Sum_probs=207.9
Q ss_pred CCCEEEEEEe-CC-EEEEEECCC-------eEEEEECCCCCee--------EEEEeccCCCcEEEEEEcCCCCEEEEE--
Q 002389 649 SGAVTALIYY-KG-LLCSGFSDG-------SIKMWDIKKQSAM--------LVWDVKEHRKAVTSFSLFEPGESLLSG-- 709 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~DG-------tIrIWD~~~~~~~--------~i~~l~gH~~~Vtslafspdg~~LaSg-- 709 (929)
.-||++++|+ ++ +|++||.|. .|++|++...... ....+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 3589999999 55 788887644 5999998765421 123567899999988764 4556655
Q ss_pred ---------eCCCeEEEEEccCCeEEEEE--Ee------ccCCC--eEEeccCCCEEEEEe--cCCeEEEEeCCC--cee
Q 002389 710 ---------SADKTIGVWQMVQRKLELIE--VI------ATKEP--IRKLDTYGKTIFAST--QGHRMKVIDSSR--TLK 766 (929)
Q Consensus 710 ---------s~DgtIrIWDl~tg~~~~~~--~~------~h~~~--V~s~s~~g~~L~sgs--~Dg~V~IWDl~~--~~~ 766 (929)
+.|+++++|++.++...... .. .+... +.+|+|+|+++++++ .|++|++||+.. ...
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 45788999998764322111 11 11222 346899999987655 689999999984 344
Q ss_pred eeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC---eE
Q 002389 767 DIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS---NI 842 (929)
Q Consensus 767 ~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg---tI 842 (929)
.+.+...|.+++|+ +|++++.+.++.+.+|+..++..... .....|...+.++.++|++.+.++.+.+++ .+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIAR----KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEE----ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceee----eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 45566779999998 88866666677888888877654332 233456788999999999998888775543 68
Q ss_pred EEEECCCCCe----EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE-eCC-CCeEEEEEc--CCEE
Q 002389 843 KEWRRHRKPQ----ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI-SAG-SKITSLLTA--NDIV 914 (929)
Q Consensus 843 ~IWDl~~~~~----i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl-~~h-~~Vtsvs~d--g~~L 914 (929)
+.||...... ...+.+|...|++++|+|||++||+|+.||+|+|||+.+++++.++ .+| .+|++++|+ |++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 8898766543 3456789999999999999999999999999999999999999986 677 459999876 7899
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
+|||.|++|+||++
T Consensus 328 aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 328 ASVSAANTIHIIKL 341 (365)
T ss_dssp EEEETTSEEEEEEC
T ss_pred EEEeCCCeEEEEEc
Confidence 99999999999986
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=8e-27 Score=268.88 Aligned_cols=268 Identities=17% Similarity=0.211 Sum_probs=218.9
Q ss_pred CCCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF--EPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafs--pdg~~LaSgs~DgtIrIWDl~t 722 (929)
.+|.++|++++|+ ++++++|+.||+|++||+.+++ .+..+.+|.++|++++|+ ++++++++|+.||+|++||+.+
T Consensus 159 ~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp CCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred eCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc--EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 3899999999999 5699999999999999999885 478889999999999998 5778899999999999999987
Q ss_pred CeEE----------------------EEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEE
Q 002389 723 RKLE----------------------LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSM 777 (929)
Q Consensus 723 g~~~----------------------~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sl 777 (929)
+... .....+|...+.+++++++.+++++.||.|++||+.. ....+.. ...|.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 316 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 316 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEE
Confidence 6532 2344578888999999999999999999999999974 3333433 5669999
Q ss_pred EEe-CC-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 778 SVV-QG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 778 a~s-dg-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
+++ ++ .+++|+.||.|++||+.+++.. ..+.+|...+.++.+++ .++++.+ .||+|++||..++.....
T Consensus 317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~~--~~l~s~s-~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 317 IYDHERKRCISASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLSD--KFLVSAA-ADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECS--SEEEEEE-TTSEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEE------EEEeCCCCcEEEEEEcC--CEEEEEe-CCCcEEEEECCCCceeee
Confidence 998 54 4889999999999999887543 33467889999999985 3445555 689999999998775544
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE-EeCC-CCeEEEEEcCCEEEEE-ECCCcEEEe
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR-ISAG-SKITSLLTANDIVLCG-TETGLIKGW 926 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~t-l~~h-~~Vtsvs~dg~~LaSg-s~DG~I~IW 926 (929)
. .|...+..++|+|++.++++|+ ||.|++||+.+++.+.. +..| ..|++++|+++.++++ +.||.+.+|
T Consensus 388 ~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 388 Y-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp E-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred e-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 4 4667788899999999999999 99999999999999986 3444 4499999998766554 556655444
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=278.18 Aligned_cols=278 Identities=8% Similarity=0.078 Sum_probs=222.2
Q ss_pred CCCEEEEEEe-C-C-EEEEE----------ECCCeEEEEECCCCCee-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe
Q 002389 649 SGAVTALIYY-K-G-LLCSG----------FSDGSIKMWDIKKQSAM-LVWDVKEHRKAVTSFSLFEPGESLLSGSADKT 714 (929)
Q Consensus 649 ~~~Vtsl~fs-~-~-~LaSG----------s~DGtIrIWD~~~~~~~-~i~~l~gH~~~Vtslafspdg~~LaSgs~Dgt 714 (929)
...|++++|+ + . ++++| +.||.|+|||+.++... .+..+ .|...|++++|+|++++|++|+.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 4568889998 3 3 89999 89999999999976422 22333 68999999999999999999999999
Q ss_pred EEEEEccC---CeEEEEEEeccCCCeEE--eccC-CCEEEEEecCCeEEEEeCCCce------e--ee----ccCCCeEE
Q 002389 715 IGVWQMVQ---RKLELIEVIATKEPIRK--LDTY-GKTIFASTQGHRMKVIDSSRTL------K--DI----YRSKGIKS 776 (929)
Q Consensus 715 IrIWDl~t---g~~~~~~~~~h~~~V~s--~s~~-g~~L~sgs~Dg~V~IWDl~~~~------~--~l----~~~~~V~s 776 (929)
|++||+.+ +........+|...|.+ |+++ ++++++++.|+.|++||+.... . .. .+...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 22234445578888876 5676 7899999999999999998432 1 11 23456999
Q ss_pred EEEe-C-C-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCC---eEEEEECCC
Q 002389 777 MSVV-Q-G-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGS---NIKEWRRHR 849 (929)
Q Consensus 777 la~s-d-g-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDg---tI~IWDl~~ 849 (929)
++|+ + + .+++++.|+.|++||+.+++............++...+.++.++|++ .++++.+ .|+ .|++||+++
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT-GSDNDPSILIWDLRN 249 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE-CCSSSCCCCEEETTS
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE-CCCCCceEEEEeCCC
Confidence 9997 4 3 48889999999999999876543322111112237889999999986 4555555 566 999999987
Q ss_pred C-CeEEEec-CCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--C-CEEEEEECCCc
Q 002389 850 K-PQISIAP-EKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--N-DIVLCGTETGL 922 (929)
Q Consensus 850 ~-~~i~~l~-~h~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g-~~LaSgs~DG~ 922 (929)
+ .....+. +|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|. .|++++|+ + .+|++++.||.
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 5 5667777 8999999999999 99999999999999999999999999999984 59888886 4 79999999999
Q ss_pred EEEeec
Q 002389 923 IKGWIP 928 (929)
Q Consensus 923 I~IWdi 928 (929)
|++|++
T Consensus 330 i~iw~~ 335 (416)
T 2pm9_A 330 IEVQTL 335 (416)
T ss_dssp EEEEES
T ss_pred EEEEEc
Confidence 999985
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=1.6e-27 Score=267.64 Aligned_cols=239 Identities=15% Similarity=0.189 Sum_probs=188.1
Q ss_pred CCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLV--WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i--~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+|.+.|++++|+ ++.+++|+.||+|+|||+.+++.... ....+|.++|++++|+|+|++|++|+.||+|++||+.++
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 689999999999 67889999999999999988754322 344589999999999999999999999999999999998
Q ss_pred eEEEEEEeccCCCeEEe--ccCCC-EEEEEecCCeEEEEeCCCc--eeeec---cCCCeEEEEEe-C-CE-EEEEECCCc
Q 002389 724 KLELIEVIATKEPIRKL--DTYGK-TIFASTQGHRMKVIDSSRT--LKDIY---RSKGIKSMSVV-Q-GK-IYIGCMDSS 792 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~--s~~g~-~L~sgs~Dg~V~IWDl~~~--~~~l~---~~~~V~sla~s-d-g~-llsgs~Dg~ 792 (929)
+... ...+|...|.++ +++++ .+++++.|++|++||+... ...+. ....+.+++|+ + +. +++|+.|+.
T Consensus 172 ~~~~-~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 172 AVLK-SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp EEEE-EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred cEEE-EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc
Confidence 7543 445788888864 56664 7889999999999998732 22222 24458999997 3 33 778999999
Q ss_pred EEEEEccCCccceecccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec-
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE- 870 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp- 870 (929)
|++||+.+++.. +.+.++...|.+++++|++ .++++.+ .|++|++||.++++++..+ +|...|++++|+|
T Consensus 251 i~~wd~~~~~~~------~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~ 322 (357)
T 4g56_B 251 VSLVNIKNPDSA------QTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPL 322 (357)
T ss_dssp EEEEESSCGGGC------EEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSS
T ss_pred eeEEECCCCcEe------EEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCC
Confidence 999999886543 3346788999999999886 4566665 7899999999999877654 8999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE
Q 002389 871 DFIYLNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 871 dg~~LaSgS~DG~I~IWdl~sg~~ 894 (929)
|+.+|+|||.||+|++|++.+...
T Consensus 323 d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 323 DHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp STTEEEEEETTSCEEEEECC----
T ss_pred CCCEEEEEcCCCeEEEEECCCCCc
Confidence 899999999999999999866433
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=2.5e-26 Score=272.59 Aligned_cols=280 Identities=11% Similarity=0.075 Sum_probs=217.5
Q ss_pred cCCCCCCEEEEEEe-CC--EEEEEECCCeEEEEECCCCCeeEEEEeccCCC---cEEEEEEcCC-CCEEEEEeCCCeEEE
Q 002389 645 SHKCSGAVTALIYY-KG--LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK---AVTSFSLFEP-GESLLSGSADKTIGV 717 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs-~~--~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~---~Vtslafspd-g~~LaSgs~DgtIrI 717 (929)
..+|.+.|++++|+ ++ .+++|+.||.|++||..+++ .+..+.+|.+ +|++++|+|+ +++|++|+.||.|++
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 34899999999999 33 89999999999999998774 4788899999 9999999999 999999999999999
Q ss_pred EEccCCeEEEEEEe---ccCCCeEEecc-CCCEEEEEecCCeEEEEeCCC--ceeeeccC-----CCeEEEEEe-CCEEE
Q 002389 718 WQMVQRKLELIEVI---ATKEPIRKLDT-YGKTIFASTQGHRMKVIDSSR--TLKDIYRS-----KGIKSMSVV-QGKIY 785 (929)
Q Consensus 718 WDl~tg~~~~~~~~---~h~~~V~s~s~-~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~-----~~V~sla~s-dg~ll 785 (929)
||+.+++....... .|..+|.++.. +++.+++++.|+.|++||+.. ....+..+ ..+.++.++ ++.++
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred EECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 99999886554424 78888886433 888999999999999999873 22222211 223333333 22244
Q ss_pred EEECCCcEEEEEccCCcccee-----------------------------------------------------------
Q 002389 786 IGCMDSSIQELAVSNNVEREI----------------------------------------------------------- 806 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i----------------------------------------------------------- 806 (929)
+++.|+.|++||+.+++....
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTT
T ss_pred EEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCC
Confidence 444444444444322110000
Q ss_pred ------------------------------------------------------------------------cccc----
Q 002389 807 ------------------------------------------------------------------------KAPF---- 810 (929)
Q Consensus 807 ------------------------------------------------------------------------~~~~---- 810 (929)
....
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~ 473 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK 473 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEE
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEE
Confidence 0000
Q ss_pred --------cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCCCeEEEEEec----------C
Q 002389 811 --------KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVE----------D 871 (929)
Q Consensus 811 --------~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-h~~~V~slafSp----------d 871 (929)
..+..|...+.++.++|++.++++.+ .|+.|++||..++..+..+.+ |...|++++|+| +
T Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 474 LSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp TTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred CCCccccccccCCccCceEEEEECCCCCEEEEcC-CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence 23345677899999999999888877 778999999999999888888 999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 872 FIYLNYNSSASSLQIWLRGTQ-QKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg-~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+++|++|+.||.|++||+.++ +.+..+.+| ..|++++|+ ++ |++++.||+|++|++
T Consensus 553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 999999999999999999998 788889888 459998765 77 999999999999986
No 55
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.2e-26 Score=252.18 Aligned_cols=249 Identities=12% Similarity=0.141 Sum_probs=201.5
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCe--eEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA--MLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVW 718 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~--~~i~~l~gH~~~Vtslafsp--dg~~LaSgs~DgtIrIW 718 (929)
..+|.+.|++++|+ +.+|++|+.||+|++||+.++.. .....+.+|.++|++++|+| ++++|++|+.||+|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 35899999999998 44999999999999999986532 35677889999999999999 69999999999999999
Q ss_pred EccCCe--------EEEEEEeccCCCeEE--eccC--CCEEEEEecCCeEEEEeCCCce--eee--------------cc
Q 002389 719 QMVQRK--------LELIEVIATKEPIRK--LDTY--GKTIFASTQGHRMKVIDSSRTL--KDI--------------YR 770 (929)
Q Consensus 719 Dl~tg~--------~~~~~~~~h~~~V~s--~s~~--g~~L~sgs~Dg~V~IWDl~~~~--~~l--------------~~ 770 (929)
|+.+++ ........|...|.+ +.++ +.++++++.||.|++||+.... ..+ ..
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998863 223344578888886 5566 8899999999999999987311 111 12
Q ss_pred CCCeEEEEEe-C---C-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc----eEEEEEecCCCe
Q 002389 771 SKGIKSMSVV-Q---G-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW----LYSASSSVEGSN 841 (929)
Q Consensus 771 ~~~V~sla~s-d---g-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~----i~~~s~S~dDgt 841 (929)
...+.+++|+ + + .+++++.++.+.+|+...+....+ ..+..|...|.++.++|++ .++++.+ .|+.
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-~dg~ 241 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA----AKLPGHKSLIRSISWAPSIGRWYQLIATGC-KDGR 241 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE----EECCCCCSCEEEEEECCCSSCSSEEEEEEE-TTSC
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee----eecCCCCcceeEEEECCCCCCcceEEEEEc-CCCe
Confidence 4468899986 2 4 488899999998888777654333 3456788999999999997 6777666 7899
Q ss_pred EEEEECCCC----------------------------------------------CeEEEecCCCCCeEEEEEecCCCEE
Q 002389 842 IKEWRRHRK----------------------------------------------PQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 842 I~IWDl~~~----------------------------------------------~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
|++||+..+ ..+..+.+|...|++++|+|++++|
T Consensus 242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 999998764 4567788999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEE
Q 002389 876 NYNSSASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg~~i~tl 898 (929)
++|+.||.|++|++.+++.+..+
T Consensus 322 ~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 322 SSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEETTSCEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999987655443
No 56
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=1.5e-27 Score=269.73 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=205.0
Q ss_pred EEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEE
Q 002389 671 IKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIF 748 (929)
Q Consensus 671 IrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~ 748 (929)
+..|+.... ....++.+|.++|++++|+|++++|+||+.||+|++||+.+++... ....|...|. +|++++++++
T Consensus 48 ~~~~~~~~~--~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 48 AVSFNPTDL--VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-AIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp CCCCCCCCC--EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-EEECCCTTCCCCEECTTSSEEE
T ss_pred cccccccee--EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-EEecCCCCEEEEEECCCCCEEE
Confidence 345666654 3478899999999999999999999999999999999999887543 3446777776 5789999999
Q ss_pred EEecCCeEEEEeCCCc---------eeeecc-CCCeEEEEEe-C--CEEEEEECCCcEEEEEccCCccceeccccccccc
Q 002389 749 ASTQGHRMKVIDSSRT---------LKDIYR-SKGIKSMSVV-Q--GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL 815 (929)
Q Consensus 749 sgs~Dg~V~IWDl~~~---------~~~l~~-~~~V~sla~s-d--g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~ 815 (929)
+++.|+.+++||+... ...+.+ ...+.++.|. + ..+++|+.|++|++||+.++........ ....+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-~~~~~ 203 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS-EFPSG 203 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-CSSSS
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-ccCCC
Confidence 9999999999998631 122233 3457777775 2 3499999999999999998765433211 12246
Q ss_pred CCCCeEEEEEcC-CceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 002389 816 QSKPINSLVVYK-DWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 816 ~~~~I~sl~~~~-d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~ 893 (929)
|...+.++.+++ ++.++++++ .|++|++||++ .+..+..+.+|...|++++|+|++++|++|+.||+|++||+.+++
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs-~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGS-CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEE-TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred CccCeEEEEeecCCCCEEEEEE-CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 788999999976 666677666 78999999987 557788899999999999999999999999999999999999999
Q ss_pred EEEEEeCCC--------CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 894 KVGRISAGS--------KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 894 ~i~tl~~h~--------~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.+..+..+. .|++++|+ |++|++|+.||.|++||.
T Consensus 283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 998887542 27787765 889999999999999985
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-26 Score=257.75 Aligned_cols=253 Identities=12% Similarity=0.144 Sum_probs=196.1
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..+|.+.|++++|+ +.+|++|+.||+|++||...+....+..+.+|.++|++++|+|++++|++|+.|++|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 45899999999999 4499999999999999998876666788999999999999999999999999999999999987
Q ss_pred CeE-E-EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc----eeeecc-CCCeEEEEEe-CCE-EEEEECCC
Q 002389 723 RKL-E-LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT----LKDIYR-SKGIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 723 g~~-~-~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~----~~~l~~-~~~V~sla~s-dg~-llsgs~Dg 791 (929)
+.. . .....+|...|.+ |+++++++++++.|++|++||.... ...+.. ...|.+++|+ +|+ +++|+.|+
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 642 2 2334578888875 6789999999999999999998743 233333 4569999998 665 88999999
Q ss_pred cEEEEEccCCccce-ec--------cccccc-ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC---------e
Q 002389 792 SIQELAVSNNVERE-IK--------APFKSW-RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP---------Q 852 (929)
Q Consensus 792 ~I~iwDl~tg~~~~-i~--------~~~~~~-~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~---------~ 852 (929)
.|++||........ +. ...... ..|...|..+.+++++..+++.+ .|+.|++|+...+. .
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC-GDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE-TTSCEEEEEECTTSCTTSCCEEEE
T ss_pred eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe-CCCeEEEEEeCCCCCcceeeEEEE
Confidence 99999975422110 00 000111 23678899999999988877776 67899999976542 1
Q ss_pred EEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCcEEEEE
Q 002389 853 ISIAPEKGTTIQAMAVVEDF-IYLNYNSSASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 853 i~~l~~h~~~V~slafSpdg-~~LaSgS~DG~I~IWdl~sg~~i~tl 898 (929)
.....+|...|++++|+|++ .+|++|+.||+|++|+..+++.....
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 23446899999999999998 59999999999999999888776544
No 58
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.5e-27 Score=262.70 Aligned_cols=241 Identities=14% Similarity=0.157 Sum_probs=188.8
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE--PGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp--dg~~LaSgs~DgtIrIWDl 720 (929)
..+|.++|++++|+ +.+|++|+.|++|+|||+.++....+..+.+|.++|++++|+| ++++|+||+.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 34899999999998 4599999999999999998875556788999999999999986 4889999999999999999
Q ss_pred cCCeEEE-EEEeccCCCeEE--eccC--CCEEEEEecCCeEEEEeCCCc--e---eeecc-CCCeEEEEEe-C-------
Q 002389 721 VQRKLEL-IEVIATKEPIRK--LDTY--GKTIFASTQGHRMKVIDSSRT--L---KDIYR-SKGIKSMSVV-Q------- 781 (929)
Q Consensus 721 ~tg~~~~-~~~~~h~~~V~s--~s~~--g~~L~sgs~Dg~V~IWDl~~~--~---~~l~~-~~~V~sla~s-d------- 781 (929)
.+++... ....+|...|.+ |+|+ +.++++++.|++|++||+... . ..+.. ...+.+++|+ +
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 9875322 334578888876 5666 679999999999999998743 1 11222 3457788886 3
Q ss_pred -----------CEEEEEECCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCc----eEEEEEecCCCeEEEE
Q 002389 782 -----------GKIYIGCMDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDW----LYSASSSVEGSNIKEW 845 (929)
Q Consensus 782 -----------g~llsgs~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~----i~~~s~S~dDgtI~IW 845 (929)
..+++|+.|+.|++||+..+.. ... ..+.+|...|.++.++|++ .++++.+ .|++|++|
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~----~~l~~h~~~V~~v~~sp~~~~~~~~las~s-~D~~v~iw 243 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE----QKLEAHSDWVRDVAWAPSIGLPTSTIASCS-QDGRVFIW 243 (316)
T ss_dssp --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE----ECCBCCSSCEEEEECCCCSSCSCCEEEEEE-TTCEEEEE
T ss_pred ccccccCccccceEEEecCCCeEEEEEeCCCCcccee----eecccCCCceEEEEecCCCCCCCceEEEEc-CCCeEEEE
Confidence 2488899999999999975421 111 3456789999999999985 5666666 78999999
Q ss_pred ECCCC---C-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 846 RRHRK---P-QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 846 Dl~~~---~-~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
|.... . ....+.+|...|.+++|+|++++|++|+.||+|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 98752 1 223445688999999999999999999999999999965
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=4e-26 Score=249.90 Aligned_cols=259 Identities=15% Similarity=0.170 Sum_probs=200.4
Q ss_pred EEECCCe--EEEEECCCCCeeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccCCeE----EEEEEeccCCC
Q 002389 664 SGFSDGS--IKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP-GESLLSGSADKTIGVWQMVQRKL----ELIEVIATKEP 736 (929)
Q Consensus 664 SGs~DGt--IrIWD~~~~~~~~i~~l~gH~~~Vtslafspd-g~~LaSgs~DgtIrIWDl~tg~~----~~~~~~~h~~~ 736 (929)
+|...|+ +.++...+.+..+..+++||.++|++++|+|+ +++|+|||.||+|++||+.+++. ......+|...
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~ 88 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC
Confidence 4444455 44445555555567789999999999999998 57899999999999999976542 22334578888
Q ss_pred eEE--eccCCCEEEEEecCCeEEEEeCCCceeeec---cCCCeEEEEEe-CC-EEEEEECCCcEEEEEccCCccceeccc
Q 002389 737 IRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY---RSKGIKSMSVV-QG-KIYIGCMDSSIQELAVSNNVEREIKAP 809 (929)
Q Consensus 737 V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~---~~~~V~sla~s-dg-~llsgs~Dg~I~iwDl~tg~~~~i~~~ 809 (929)
|.+ |+++++++++++.|+.|++|+......... ....+....++ ++ .+++|+.|+.+++||.........
T Consensus 89 V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~--- 165 (340)
T 4aow_A 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV--- 165 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE---
T ss_pred EEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE---
Confidence 886 678999999999999999999885433222 24456666666 44 488999999999999876543322
Q ss_pred ccccccCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 002389 810 FKSWRLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 887 (929)
Q Consensus 810 ~~~~~~~~~~I~sl~~~~d~--i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IW 887 (929)
....|...+..+.++++. .+.++.+ .|+.|++||..++.....+.+|...|++++|+|++++|++|+.||.|++|
T Consensus 166 --~~~~~~~~v~~~~~~~~~~~~~~~s~~-~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw 242 (340)
T 4aow_A 166 --QDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242 (340)
T ss_dssp --CSSSCSSCEEEEEECSCSSSCEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred --EeccccCcccceEEccCCCCcEEEEEc-CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 235677889999888664 4455555 78899999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEEeCCCCeEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 888 LRGTQQKVGRISAGSKITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 888 dl~sg~~i~tl~~h~~Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
|+.+++.+..+..+..|+++.|+ +..+++++.||.|++||+
T Consensus 243 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred EeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEEC
Confidence 99999999999998889999887 446778888999999985
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=6.4e-27 Score=267.05 Aligned_cols=274 Identities=12% Similarity=0.139 Sum_probs=213.2
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCC---------eeEEEEeccCC------------CcEEEEEEcCCC
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS---------AMLVWDVKEHR------------KAVTSFSLFEPG 703 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~---------~~~i~~l~gH~------------~~Vtslafspdg 703 (929)
.|.+.|++++|+ +.+|++|+.||.|+|||+.++. ......+.+|. ++|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 578999999999 4499999999999999998764 12467888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEccCCeEEE---------------------------------------EEEeccCCCeEE--e
Q 002389 704 --ESLLSGSADKTIGVWQMVQRKLEL---------------------------------------IEVIATKEPIRK--L 740 (929)
Q Consensus 704 --~~LaSgs~DgtIrIWDl~tg~~~~---------------------------------------~~~~~h~~~V~s--~ 740 (929)
..|++|+.||+|++||+.++.... ....+|...|.+ |
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 789999999999999997754311 113467788875 6
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCce---ee-------e-ccCCCeEEEEEe-CC--EEEEEECCCcEEEEEccCCcccee
Q 002389 741 DTYGKTIFASTQGHRMKVIDSSRTL---KD-------I-YRSKGIKSMSVV-QG--KIYIGCMDSSIQELAVSNNVEREI 806 (929)
Q Consensus 741 s~~g~~L~sgs~Dg~V~IWDl~~~~---~~-------l-~~~~~V~sla~s-dg--~llsgs~Dg~I~iwDl~tg~~~~i 806 (929)
+++++.++++ .|+.|++||+.... .. + .+...|.+++|+ ++ .+++|+.||.|++||+.++....
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~- 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD- 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC-
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc-
Confidence 7889999998 79999999998322 11 2 234569999997 54 58899999999999998866411
Q ss_pred cccccccccCCC------------CeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCC-----------
Q 002389 807 KAPFKSWRLQSK------------PINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTT----------- 862 (929)
Q Consensus 807 ~~~~~~~~~~~~------------~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~----------- 862 (929)
.....+..+.. .+.++.++|++.++++.+ + +.|++||+.. +..+..+.+|...
T Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 -RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp -TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred -ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 01123344443 899999999999988877 4 8999999986 7777778778542
Q ss_pred ----eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC----------------------------------CCe
Q 002389 863 ----IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG----------------------------------SKI 904 (929)
Q Consensus 863 ----V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h----------------------------------~~V 904 (929)
+..++|+|++++|++|+.||.|++||+.+++.+. +.++ ..|
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 3349999999999999999999999999988763 2222 247
Q ss_pred EEEEEc--CCEEEEEECCCcEEEee
Q 002389 905 TSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 905 tsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
.+++|+ +++|++|+.++ +++|.
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEE
T ss_pred eEEEECCCCCEEEEEecce-eeeec
Confidence 778876 77999998887 77775
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=1e-26 Score=263.53 Aligned_cols=272 Identities=13% Similarity=0.079 Sum_probs=213.4
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
...+++++|+ +.+|++|+.||.|++||..+++. ...+..| ..+....|+|++++|++|+.||.|++||+.+++..
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEECCSEET--TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEecccce--eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 3445678898 45899999999999999987643 3344455 44555678999999999999999999999987643
Q ss_pred EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC--Cceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEcc
Q 002389 727 LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVS 799 (929)
Q Consensus 727 ~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~ 799 (929)
....+|...|.+ |+++++++++++.|+.|++||+. .....+.. ...|.+++|+ ++. +++++.|+.|++||+.
T Consensus 133 -~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 133 -EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp -EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred -eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 333478888886 57889999999999999999987 34444543 5679999998 554 8899999999999999
Q ss_pred CCccceecccccccccCC---------------------CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEe-c
Q 002389 800 NNVEREIKAPFKSWRLQS---------------------KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIA-P 857 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~---------------------~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l-~ 857 (929)
+++....... ...+. ..+.++.++|++.++++.+ .||.|++||+.++.....+ .
T Consensus 212 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 212 TGTTIHTFNR---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp TTEEEEEECB---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCCEEEEECC
T ss_pred CCceeEEeec---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCceeEEccc
Confidence 8765433211 11223 3444455578888877776 7889999999888766555 4
Q ss_pred CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcE-EEEEeCC--CCeEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 858 EKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRGTQQK-VGRISAG--SKITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 858 ~h~~~V~slafSpdg~-~LaSgS~DG~I~IWdl~sg~~-i~tl~~h--~~Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
+|...|++++|+|++. ++++|+.||.|++||+.+++. +..+..| ..|+++.+. +++|++|+.||+|++|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 5888999999999999 999999999999999998754 7888874 348887654 779999999999999985
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=6.6e-26 Score=253.91 Aligned_cols=281 Identities=15% Similarity=0.181 Sum_probs=214.6
Q ss_pred cCCCCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCeeEEEEe-----------ccCCCcEEEEEEcC-CCCEEEEE
Q 002389 645 SHKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDV-----------KEHRKAVTSFSLFE-PGESLLSG 709 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~~~i~~l-----------~gH~~~Vtslafsp-dg~~LaSg 709 (929)
..+|.++|++++|++ ++|++|+.||.|++||+.++........ .+|..+|++++|+| ++.+|++|
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 347999999999985 4899999999999999998754322221 25999999999999 77789999
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEE--ecc---CCCEEEEEecCCeEEEEeCCC--ceeeec-cCCCeEEEEEe-
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRK--LDT---YGKTIFASTQGHRMKVIDSSR--TLKDIY-RSKGIKSMSVV- 780 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~---~g~~L~sgs~Dg~V~IWDl~~--~~~~l~-~~~~V~sla~s- 780 (929)
+.||.|++||+.+++..... .+...+.+ +.+ ++..+++++.|+.|++||+.. ....+. +...|.+++|+
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred eCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 99999999999998754433 35555554 444 455999999999999999873 334444 35679999997
Q ss_pred CCE--EEEEECCCcEEEEEccCCcccee----------cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 781 QGK--IYIGCMDSSIQELAVSNNVEREI----------KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 781 dg~--llsgs~Dg~I~iwDl~tg~~~~i----------~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
++. +++|+.||.|++||+.++..... .........|...+.++.++|++.++++.+ .|+.|++||+.
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~ 275 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSS 275 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECC
Confidence 553 77899999999999987542111 111122356788999999999998888776 77899999998
Q ss_pred CCCeEEEecCCC-----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECC
Q 002389 849 RKPQISIAPEKG-----TTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTET 920 (929)
Q Consensus 849 ~~~~i~~l~~h~-----~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~D 920 (929)
++.......++. ..+........+..+++++.|+.|++||+.+++.+..+.+|. .|++++|+ +++|++|+.|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 877554433321 122222223345566667789999999999999999999884 59998876 7799999999
Q ss_pred CcEEEeec
Q 002389 921 GLIKGWIP 928 (929)
Q Consensus 921 G~I~IWdi 928 (929)
|.|++|++
T Consensus 356 g~i~iw~~ 363 (408)
T 4a11_B 356 CNILAWVP 363 (408)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEeC
Confidence 99999985
No 63
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=5e-26 Score=250.94 Aligned_cols=238 Identities=16% Similarity=0.199 Sum_probs=197.9
Q ss_pred eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeE----EEEEEeccCCCeEE--eccCCCEEEEEecCC
Q 002389 682 MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKL----ELIEVIATKEPIRK--LDTYGKTIFASTQGH 754 (929)
Q Consensus 682 ~~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~tg~~----~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg 754 (929)
.+..++.+|.++|++++|+|++ ++|+||+.|++|++||+.+... ......+|...|.+ ++++++++++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3567889999999999999965 7899999999999999864321 22345578888885 689999999999999
Q ss_pred eEEEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc
Q 002389 755 RMKVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW 829 (929)
Q Consensus 755 ~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~ 829 (929)
+|++||+.. ....+.. ...|.+++++ ++. +++|+.|+.|++||+..... ..+.+|...+..+.++|..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~-------~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL-------ATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE-------EEECCCSSCEEEEEECCC-
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-------EEEeccCCcEEEEEEccCC
Confidence 999999874 3344444 4569999997 554 88999999999999975322 2335678899999998853
Q ss_pred ------eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Q 002389 830 ------LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK 903 (929)
Q Consensus 830 ------i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~ 903 (929)
..+++.+ .|++|++||++.......+.+|...|++++|+|+|++|++|+.||+|++||+.+++.+.++..+..
T Consensus 161 ~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 239 (319)
T 3frx_A 161 KADDDSVTIISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239 (319)
T ss_dssp -----CCEEEEEE-TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSC
T ss_pred CCCCCccEEEEEe-CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCc
Confidence 3566665 789999999999998889999999999999999999999999999999999999999999998888
Q ss_pred eEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 904 ITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 904 Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|.+++|+ +.++++++.++ +++|+.
T Consensus 240 v~~~~~sp~~~~la~~~~~~-i~v~~~ 265 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATATG-IKVFSL 265 (319)
T ss_dssp EEEEEECSSSSEEEEEETTE-EEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCC-cEEEEe
Confidence 9998876 66888887665 999974
No 64
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=1.7e-26 Score=262.25 Aligned_cols=241 Identities=18% Similarity=0.330 Sum_probs=194.8
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.|...|++++|+ +.+|++|+.||+|+|||+.+++ .+..+.+|...|++++|+|++++|++|+.|++|++||+.+++
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 345569999999 3499999999999999999874 477889999999999999999999999999999999999987
Q ss_pred EEEEEEeccCCCeEE--ecc-CCCEEEEEecCCeEEEEeCCCc--eeee--------ccCCCeEEEEEe-CCE-EEEEEC
Q 002389 725 LELIEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSSRT--LKDI--------YRSKGIKSMSVV-QGK-IYIGCM 789 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~-~g~~L~sgs~Dg~V~IWDl~~~--~~~l--------~~~~~V~sla~s-dg~-llsgs~ 789 (929)
+.... .+...+.+ +++ +++++++++.|+.|++||.... ...+ .+...|.+++|+ +|. +++|+.
T Consensus 199 ~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 199 CSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 54433 34555654 566 7899999999999999998732 2222 124569999997 665 888999
Q ss_pred CCcEEEEEccCCcccee------cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 002389 790 DSSIQELAVSNNVEREI------KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 863 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i------~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V 863 (929)
|+.|++||+.+...... ......+.+|...|.++.+++++.++++.+ .|+.|++||..++..+..+.+|...|
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~iwd~~~~~~~~~l~~h~~~v 355 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSV 355 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEECCCCCCE
Confidence 99999999976432110 001124567888999999999999888877 78999999999999999999999999
Q ss_pred EEEEEec------CCCEEEEEeCCCcEEEEECCCC
Q 002389 864 QAMAVVE------DFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 864 ~slafSp------dg~~LaSgS~DG~I~IWdl~sg 892 (929)
.+++|++ ++.+|++|+.||+|++|+..+.
T Consensus 356 ~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999986 6889999999999999997543
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=4.9e-26 Score=280.57 Aligned_cols=272 Identities=14% Similarity=0.192 Sum_probs=228.0
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.+.|++++|+ +.+|++|+.||.|+|||..+++ .+..+.+|.++|++++|+|++++|++|+.||.|++||+.+++
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 899999999999 4499999999999999999875 478888999999999999999999999999999999999987
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc---eeeec-cCCCeEEEEEe--CCE-EEEEECCCcEEE
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT---LKDIY-RSKGIKSMSVV--QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~-~~~~V~sla~s--dg~-llsgs~Dg~I~i 795 (929)
... ...+|...|.+ |++++..+++++.||.|++||+... ...+. +...|.+++|+ ++. +++++.||.|++
T Consensus 89 ~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 89 KVV-DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp EEE-EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred EEE-EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 543 34568888885 6788999999999999999998743 22333 34669999997 344 888999999999
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcC--CceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYK--DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~--d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
||+.++..... ....+...+..+.++| ++.++++.+ .|+.|++||..++.....+.+|...|.+++|+|++.
T Consensus 168 wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 168 WSLGQSTPNFT-----LTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp EETTCSSCSEE-----EECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred EECCCCcceeE-----EecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 99987554322 1123347889999998 777777766 788999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcCC----EEEEEECCCcEEEeec
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTAND----IVLCGTETGLIKGWIP 928 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~dg~----~LaSgs~DG~I~IWdi 928 (929)
++++|+.||.|++||..+++.+..+..| ..|++++|+++ ++++|+ |+.+.+|+.
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 300 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSL 300 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEc
Confidence 9999999999999999999999999988 45999998743 455555 555777763
No 66
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=6.1e-26 Score=254.37 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=199.9
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEe
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWD 760 (929)
...++.+|.++|++++|+|++++|+||+.||+|++||..+++.... ...+...|. +++|++..+++++.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA-VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE-EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3678899999999999999999999999999999999988875433 334555555 5789999999999999999999
Q ss_pred CCCc--------eeeec-cCCCeEEEEEe-CC-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-
Q 002389 761 SSRT--------LKDIY-RSKGIKSMSVV-QG-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD- 828 (929)
Q Consensus 761 l~~~--------~~~l~-~~~~V~sla~s-dg-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d- 828 (929)
+... ...+. +...|.++.|+ ++ .+++++.|++|++||+.+++.. ..+.+|...+.++.++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~------~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL------QSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEECCCS
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE------EEEcCCCCCeEEEEEEeCC
Confidence 8621 12222 34568999997 44 5999999999999999887543 344678889999999874
Q ss_pred -ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC---Ce
Q 002389 829 -WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS---KI 904 (929)
Q Consensus 829 -~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~---~V 904 (929)
+.++++.+ .|++|++||++++..+..+.+|...|++++|+|++.+|++|+.||+|++||+.+++.+..+..+. .+
T Consensus 209 ~g~~l~sgs-~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 209 TGNTFVSGG-CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp SCCEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 45666666 78999999999999999999999999999999999999999999999999999998888777553 47
Q ss_pred EEEEEc--CCEEEEEECCCcEEEeec
Q 002389 905 TSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 905 tsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++++|+ |++|++|+.||+|++||+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 888775 789999999999999986
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-27 Score=281.17 Aligned_cols=260 Identities=13% Similarity=0.029 Sum_probs=193.0
Q ss_pred EEEEECCCeEEEEECCCCCee--EEEEeccCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEEccCCeEE-------
Q 002389 662 LCSGFSDGSIKMWDIKKQSAM--LVWDVKEHRKAVTSFSLFEP------GESLLSGSADKTIGVWQMVQRKLE------- 726 (929)
Q Consensus 662 LaSGs~DGtIrIWD~~~~~~~--~i~~l~gH~~~Vtslafspd------g~~LaSgs~DgtIrIWDl~tg~~~------- 726 (929)
+++|+.||+|+|||+.+++.. ....+.+|.+.|++++|+|+ +.+|+||+.||+|++||+.++...
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 555778999999999876532 23456788899999999997 578999999999999999876421
Q ss_pred ---EEEEeccCCCeEEecc-CCCEEEEEecCCeEEEEeCCCc---eeeec-cCCCeEEE--EEe-CC-E-EEEEECCCcE
Q 002389 727 ---LIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSSRT---LKDIY-RSKGIKSM--SVV-QG-K-IYIGCMDSSI 793 (929)
Q Consensus 727 ---~~~~~~h~~~V~s~s~-~g~~L~sgs~Dg~V~IWDl~~~---~~~l~-~~~~V~sl--a~s-dg-~-llsgs~Dg~I 793 (929)
.....+|..+|.++.. .+..+++|+.||+|++||++.. ...+. +...|.++ .++ +| . +++|+.|++|
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 1134467788887653 2458999999999999999732 22233 35679999 455 55 4 7899999999
Q ss_pred EEEEccCCccceecccccccccCC--CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQS--KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVED 871 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~--~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpd 871 (929)
++||+++++.... +.+|. ..+.+++++|++...++.+ +|++|++||.+.+.....+.+|...|++++|+|+
T Consensus 336 klWD~~~~~~~~~------~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 336 YIFNPKDIATTKT------TVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp EEECGGGHHHHCE------EEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred EEEECCCCCcccc------cccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 9999987654322 12222 3478899999887766655 7789999999998887888899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC--------------------------------------------CcEEEEEeCC-CCeEE
Q 002389 872 FIYLNYNSSASSLQIWLRGT--------------------------------------------QQKVGRISAG-SKITS 906 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~s--------------------------------------------g~~i~tl~~h-~~Vts 906 (929)
|++|++|+.||+|++||... +..+.++.+| .+|++
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCC
T ss_pred CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEE
Confidence 99999999999999997421 1112233344 34888
Q ss_pred EEEcCC-----EEEEEECCCcEEEeec
Q 002389 907 LLTAND-----IVLCGTETGLIKGWIP 928 (929)
Q Consensus 907 vs~dg~-----~LaSgs~DG~I~IWdi 928 (929)
++|+++ .+++|+.||+|+||++
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEc
Confidence 998844 8999999999999985
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=3.1e-26 Score=296.41 Aligned_cols=278 Identities=12% Similarity=0.116 Sum_probs=231.0
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|.+.|++++|+ +.++++|+.||+|++||..+++. +..+.+|.++|++++|+|+|++|++|+.||+|++||+.++
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 4899999999999 44999999999999999998854 7889999999999999999999999999999999999998
Q ss_pred eEEEEEEeccCCCeEE--ecc--CCCEEEEEecCCeEEEEeCCC--ceeeecc-CCCeEEEEEe-CC-EEEEEECCCcEE
Q 002389 724 KLELIEVIATKEPIRK--LDT--YGKTIFASTQGHRMKVIDSSR--TLKDIYR-SKGIKSMSVV-QG-KIYIGCMDSSIQ 794 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~--~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~-~~~V~sla~s-dg-~llsgs~Dg~I~ 794 (929)
+... ...+|...|.+ |++ ++..+++++.|+.|++||+.. ....+.. ...|.+++|+ ++ .+++|+.||.|+
T Consensus 690 ~~~~-~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 690 KLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CEEE-EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred ceEE-EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 7544 44578888886 455 455899999999999999884 3333433 5569999997 55 488999999999
Q ss_pred EEEccCCccceecccccc-------cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEE
Q 002389 795 ELAVSNNVEREIKAPFKS-------WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAM 866 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~-------~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h~~~V~sl 866 (929)
+||+.++........... .......+.++.++|++...+..+ ++.+.+||..++....... +|...|.++
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 999988654322111000 011234677888999998888776 6799999998888766554 899999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+|+|++.++++|+.||.|++||..++..+..+.+|. .|++++|+ |+.|++++.||+|++|++
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999999999999999999999999999995 49998876 779999999999999984
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=7.5e-26 Score=268.41 Aligned_cols=272 Identities=14% Similarity=0.118 Sum_probs=231.1
Q ss_pred CCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCC----CeeEEEEeccCCCc-EEEEEEcC--CCCEEEEEeCCCeEE
Q 002389 646 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQ----SAMLVWDVKEHRKA-VTSFSLFE--PGESLLSGSADKTIG 716 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~----~~~~i~~l~gH~~~-Vtslafsp--dg~~LaSgs~DgtIr 716 (929)
..|.+.|++++|+ + .+|++|+ |+.|++||+.++ +. ...+.+|.++ |++++|+| ++++|++|+.||+|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 3789999999999 3 3888888 899999999976 43 7788999999 99999999 999999999999999
Q ss_pred EEEccCC------eE-EEEEEeccCCCeEE--eccCCCEEEEEecC----CeEEEEeCCCceeeecc-CCCeEEEEEe-C
Q 002389 717 VWQMVQR------KL-ELIEVIATKEPIRK--LDTYGKTIFASTQG----HRMKVIDSSRTLKDIYR-SKGIKSMSVV-Q 781 (929)
Q Consensus 717 IWDl~tg------~~-~~~~~~~h~~~V~s--~s~~g~~L~sgs~D----g~V~IWDl~~~~~~l~~-~~~V~sla~s-d 781 (929)
+||+.++ .. .......|..+|.+ |+++++++++++.+ +.|.+||..+....+.. ...|.+++|+ +
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSS
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCC
Confidence 9999765 22 23334467888875 67899999999988 79999997666666555 4569999997 5
Q ss_pred C--EEEEEECCCcEEEEEccCCccceecccccccccCCC---CeEEEEEcCC-ceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 782 G--KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKD-WLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 782 g--~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~---~I~sl~~~~d-~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
+ .+++++.|+.|++||..+++... .+..|.. .+.++.++|+ +.++++.+ .|+.|++||..+++.+..
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSA------SDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEE------EECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTTCCEEEE
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceee------eecccCCCCceEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCEeEE
Confidence 5 58899999999999998765432 2345667 8999999999 88887776 678999999999998888
Q ss_pred e-c---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-----CCeEEEEE-cCCEEEEEECCCcEEE
Q 002389 856 A-P---EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-----SKITSLLT-ANDIVLCGTETGLIKG 925 (929)
Q Consensus 856 l-~---~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-----~~Vtsvs~-dg~~LaSgs~DG~I~I 925 (929)
+ . +|...|.+++|+ ++.++++++.||.|++||+.+++.+..+..+ ..+.++.| +++++++|+.||.|++
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEE
Confidence 8 6 899999999999 9999999999999999999999999999877 34777666 6899999999999999
Q ss_pred eec
Q 002389 926 WIP 928 (929)
Q Consensus 926 Wdi 928 (929)
|++
T Consensus 324 ~d~ 326 (615)
T 1pgu_A 324 YEL 326 (615)
T ss_dssp EET
T ss_pred EEC
Confidence 985
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=2.5e-26 Score=250.50 Aligned_cols=239 Identities=11% Similarity=0.140 Sum_probs=189.4
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-EEEEEeccCCCeEEec--c--CCCEEEEEecCCeEEEE
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-ELIEVIATKEPIRKLD--T--YGKTIFASTQGHRMKVI 759 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~-~~~~~~~h~~~V~s~s--~--~g~~L~sgs~Dg~V~IW 759 (929)
..+.+|.++|++++|+|+|++|+||+.|++|++||+.++.. ......+|..+|.++. + +++.+++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999975421 2334568999998754 3 37899999999999999
Q ss_pred eCCCc----eeeec-cCCCeEEEEEe-C--C-EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc-
Q 002389 760 DSSRT----LKDIY-RSKGIKSMSVV-Q--G-KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW- 829 (929)
Q Consensus 760 Dl~~~----~~~l~-~~~~V~sla~s-d--g-~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~- 829 (929)
|+... ...+. +...|.+++|+ + | .+++|+.|+.|++||+.++..... .....|...+.++.++|+.
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP----IIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC----EEEECCSSCEEEEEECCCC-
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee----eeeecccCccceEeecCCcc
Confidence 98732 22333 34579999997 3 4 488999999999999987532111 2346788899999999863
Q ss_pred ------------eEEEEEecCCCeEEEEECCCCC----eEEEecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECC
Q 002389 830 ------------LYSASSSVEGSNIKEWRRHRKP----QISIAPEKGTTIQAMAVVEDF---IYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 830 ------------i~~~s~S~dDgtI~IWDl~~~~----~i~~l~~h~~~V~slafSpdg---~~LaSgS~DG~I~IWdl~ 890 (929)
.++++.+ .|++|++||.+++. ....+.+|...|++++|+|++ .+|++|+.|++|++||+.
T Consensus 159 ~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp -----------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 4566655 78999999987765 566888999999999999985 899999999999999987
Q ss_pred CCc--EE-EEE--eCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 891 TQQ--KV-GRI--SAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 891 sg~--~i-~tl--~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++. .. ..+ ..| ..|++++|+ |++|++|+.||+|++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 643 12 223 234 459988876 789999999999999984
No 71
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=2.5e-26 Score=255.58 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=187.3
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
..+|.+.|++++|+ +.++++|+.||+|++||+.+++. +..+.+|.++|++++|+|++++|++|+.|++|++||+..
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 35899999999998 34899999999999999998854 778899999999999999999999999999999999974
Q ss_pred CeEEEEEE--eccCCCeEE--eccCC----------CEEEEEecCCeEEEEeCCCcee-eec-cCCCeEEEEEe-CCE-E
Q 002389 723 RKLELIEV--IATKEPIRK--LDTYG----------KTIFASTQGHRMKVIDSSRTLK-DIY-RSKGIKSMSVV-QGK-I 784 (929)
Q Consensus 723 g~~~~~~~--~~h~~~V~s--~s~~g----------~~L~sgs~Dg~V~IWDl~~~~~-~l~-~~~~V~sla~s-dg~-l 784 (929)
.. ..... ..|...|.+ +++++ .++++++.|+.|++||...... .+. +...|.+++|+ +|+ +
T Consensus 150 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 150 EC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp CE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred Cc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEE
Confidence 33 21111 156667775 44554 6899999999999999664332 333 34569999997 665 8
Q ss_pred EEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE--Eec-----
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS--IAP----- 857 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~--~l~----- 857 (929)
++|+.|+.|++||+....... .. ..+...+.+++++|++.++++.+ |+.|++||..++.... .+.
T Consensus 229 ~sgs~dg~v~iwd~~~~~~~~-----~~-~~~~~~v~~v~~sp~~~~la~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~ 300 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTYPQ-----RE-FDAGSTINQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAPVCTIEAEPIT 300 (343)
T ss_dssp EEEETTCEEEEEESSCCSSCS-----EE-EECSSCEEEEEECSSSCEEEEEE--SSCEEEEESSSCCSCSEEECCCCSGG
T ss_pred EEEcCCCeEEEEECCCCcccc-----ee-ecCCCcEEEEEECCCCCEEEEEC--CCCEEEEEeCCCCCCceEEeecCcch
Confidence 889999999999995432111 11 12356799999999988776553 6789999987665332 333
Q ss_pred ------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002389 858 ------EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 858 ------~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg 892 (929)
+|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 68889999999999999999999999999998664
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=3.6e-26 Score=259.00 Aligned_cols=268 Identities=15% Similarity=0.196 Sum_probs=207.7
Q ss_pred CEEEE-EEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 651 AVTAL-IYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 651 ~Vtsl-~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
.+.++ .|+ +++|++|+.||.|++||+.+++ ....+.+|.++|++++|+|++++|++|+.||+|++||+.+++...
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence 44444 555 4599999999999999999774 366778999999999999999999999999999999999887543
Q ss_pred EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeecc----CCCeEEEEE--------------------
Q 002389 728 IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR----SKGIKSMSV-------------------- 779 (929)
Q Consensus 728 ~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~----~~~V~sla~-------------------- 779 (929)
...+|..+|.+ |+++++.+++++.|+.|++||+.. ....+.. ...+.++++
T Consensus 176 -~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 176 -TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp -EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred -EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 34578888886 678999999999999999999873 2233321 234555554
Q ss_pred -e-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCC-eEE
Q 002389 780 -V-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKP-QIS 854 (929)
Q Consensus 780 -s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~-~i~ 854 (929)
+ ++. +++|+.||.|++||+.++..... ....|...+.++.++|++. ++++.+ .||.|++||+.++. .+.
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-----LPSKFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCCEEEE-----ECCTTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSE
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCceeEE-----cccccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCCCcCchh
Confidence 3 565 88899999999999988654322 2235678999999999987 666666 78999999998764 355
Q ss_pred EecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---------EEEEEeCC-CCeEEEEEc--CC---EEEEEE
Q 002389 855 IAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ---------KVGRISAG-SKITSLLTA--ND---IVLCGT 918 (929)
Q Consensus 855 ~l~~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~---------~i~tl~~h-~~Vtsvs~d--g~---~LaSgs 918 (929)
.+.+ |...|.++.+ +++++|++++.||.|++|++.+.. ....+..| ..|.+++|+ ++ .+++++
T Consensus 329 ~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 329 EFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp EEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred hhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence 5555 6778888854 578899999999999999977632 12233444 458887764 66 788888
Q ss_pred CCCcEEEeec
Q 002389 919 ETGLIKGWIP 928 (929)
Q Consensus 919 ~DG~I~IWdi 928 (929)
.+|.+.+|++
T Consensus 408 ~~g~~~~~~~ 417 (420)
T 3vl1_A 408 KNNFCALYNL 417 (420)
T ss_dssp TTTEEEEEES
T ss_pred CCceEEEEec
Confidence 9999999985
No 73
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-26 Score=250.47 Aligned_cols=246 Identities=13% Similarity=0.172 Sum_probs=199.9
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEc
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQM 720 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl 720 (929)
..+|.++|++++|+ +.+|++|+.||.|+|||+.......+..+.+|.++|++++|+|+ +++|++|+.||+|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 34899999999999 44999999999999999986665677889999999999999987 899999999999999999
Q ss_pred cCCeEEEE-EEeccCCCeEE--eccC--CCEEEEEecCCeEEEEeCCCc----eeee-ccCCCeEEEEEeC---------
Q 002389 721 VQRKLELI-EVIATKEPIRK--LDTY--GKTIFASTQGHRMKVIDSSRT----LKDI-YRSKGIKSMSVVQ--------- 781 (929)
Q Consensus 721 ~tg~~~~~-~~~~h~~~V~s--~s~~--g~~L~sgs~Dg~V~IWDl~~~----~~~l-~~~~~V~sla~sd--------- 781 (929)
.+++.... ....|...|.+ ++++ +..+++++.|+.|++||+... ...+ .+...|.+++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 99874333 33467888886 5677 889999999999999998743 1122 2356799999963
Q ss_pred -----CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECCCCC-
Q 002389 782 -----GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRHRKP- 851 (929)
Q Consensus 782 -----g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d---~i~~~s~S~dDgtI~IWDl~~~~- 851 (929)
+. +++|+.|+.|++||+.++..... ....+..|..+|.++.++|+ +.++++.+ .|+.|++||...+.
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYV--LESTLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQG 243 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEE--EEEEECCCSSCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESSTTS
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCccee--eEEEEecccCcEeEEEECCCCCCCCeEEEEe-CCCEEEEEeCCCCCc
Confidence 44 88899999999999987653211 11345678899999999999 78877776 78899999988763
Q ss_pred --eEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 002389 852 --QISIA--PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 852 --~i~~l--~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~ 893 (929)
..... ..|...|++++|+|+|++|++++.||.|++|++..+.
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 22333 3488899999999999999999999999999987543
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.4e-26 Score=249.97 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=192.1
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE--ec-cCCCeEE--eccCCCEEEEEecCCeE
Q 002389 682 MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV--IA-TKEPIRK--LDTYGKTIFASTQGHRM 756 (929)
Q Consensus 682 ~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~--~~-h~~~V~s--~s~~g~~L~sgs~Dg~V 756 (929)
..+.++.+|.++|++++|+|+ +|++|+.|++|++||+.++....... .+ |..+|.+ |+|+++++++++.|++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 357788999999999999987 99999999999999998764322222 33 8888885 67899999999999999
Q ss_pred EEEeCCC---------ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCC-ccceecccccccccCCCCeEEE
Q 002389 757 KVIDSSR---------TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSL 823 (929)
Q Consensus 757 ~IWDl~~---------~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg-~~~~i~~~~~~~~~~~~~I~sl 823 (929)
++||... ....+.. ...|.+++|+ +|+ +++|+.|++|++||+..+ ..... ...+.+|...|.++
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~---~~~~~~h~~~v~~v 159 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC---ISVLQEHSQDVKHV 159 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE---EEEECCCSSCEEEE
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE---EEEeccCCCceEEE
Confidence 9999852 1222333 4569999998 665 888999999999999542 21111 13456788999999
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCCC--CeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCC-------
Q 002389 824 VVYKDWLYSASSSVEGSNIKEWRRHRK--PQISIAPEKGTTIQAMAVVED--FIYLNYNSSASSLQIWLRGTQ------- 892 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDgtI~IWDl~~~--~~i~~l~~h~~~V~slafSpd--g~~LaSgS~DG~I~IWdl~sg------- 892 (929)
.++|++.++++.+ .|++|++||...+ ..+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.++
T Consensus 160 ~~~p~~~~l~s~s-~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 160 IWHPSEALLASSS-YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EECSSSSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EECCCCCEEEEEc-CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999998888877 7899999998765 567889999999999999998 789999999999999998654
Q ss_pred -cEEEEEeC-C-CCeEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 893 -QKVGRISA-G-SKITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 893 -~~i~tl~~-h-~~Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
.....+.. | ..|++++|+ +.+|++|+.||+|++|+.
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE 278 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEE
T ss_pred eEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEc
Confidence 34455554 5 459999997 558999999999999984
No 75
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=3.7e-25 Score=241.51 Aligned_cols=235 Identities=16% Similarity=0.252 Sum_probs=192.9
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.+|...|++++|+ +++|++|+.||.|++||+.+++. +..+.+|...|.+++|+|++++|++|+.||+|++||+.++
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 4899999999999 44999999999999999998854 7888999999999999999999999999999999999988
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeecc--CCCeEEEEEe-CCE-EEEEECCCcEEE
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR--SKGIKSMSVV-QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~--~~~V~sla~s-dg~-llsgs~Dg~I~i 795 (929)
+.. .....|..+|.+ ++++++.+++++.||.|++||+... ...+.. ...+.+++|+ ++. +++++.|+.|++
T Consensus 140 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 218 (312)
T 4ery_A 140 KCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218 (312)
T ss_dssp CEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred EEE-EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 754 344567788875 5788999999999999999999742 333322 3468899997 555 888999999999
Q ss_pred EEccCCccceecccccccccCCC---CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSK---PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 872 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~---~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg 872 (929)
||+.+++.... +.+|.. .+......+++.++++.+ .|+.|++||+.++..+..+.+|...|.+++|+|++
T Consensus 219 wd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 219 WDYSKGKCLKT------YTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EETTTTEEEEE------ECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred EECCCCcEEEE------EEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence 99988754332 223322 222333345666666665 78999999999999999999999999999999999
Q ss_pred CEEEEEe--CCCcEEEEECC
Q 002389 873 IYLNYNS--SASSLQIWLRG 890 (929)
Q Consensus 873 ~~LaSgS--~DG~I~IWdl~ 890 (929)
.++++++ .|++|++|+..
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 9999997 69999999864
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=1.3e-25 Score=247.70 Aligned_cols=243 Identities=14% Similarity=0.137 Sum_probs=197.3
Q ss_pred CCCCCCEEEEEEe-C----C-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 002389 646 HKCSGAVTALIYY-K----G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVW 718 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~----~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIW 718 (929)
..|.+.|++++|+ + + +|++|+.||.|++||+.+++. +..+.+|..+|++++|+| ++.+|++|+.||+|++|
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE--EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE--eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3588999999998 3 2 899999999999999998754 778889999999999999 89999999999999999
Q ss_pred EccCCeEEEEEE--eccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCce--eeec-----------------------
Q 002389 719 QMVQRKLELIEV--IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL--KDIY----------------------- 769 (929)
Q Consensus 719 Dl~tg~~~~~~~--~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~----------------------- 769 (929)
|+.+++...... ..|...|.+ ++++++.+++++.||.|++||+.... ..+.
T Consensus 144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 999987544432 468888886 56889999999999999999987321 1111
Q ss_pred ------cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCcccee--------cccccccccCCCCeEEEEEcCC--ceEEE
Q 002389 770 ------RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREI--------KAPFKSWRLQSKPINSLVVYKD--WLYSA 833 (929)
Q Consensus 770 ------~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i--------~~~~~~~~~~~~~I~sl~~~~d--~i~~~ 833 (929)
+...|.+++|++..+++++.|+.|++||+.++..... ......+..|...+..+.++++ +.+++
T Consensus 224 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp EEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 4556999999977799999999999999987643100 0012334566778888888888 88887
Q ss_pred EEecCCCeEEEEECCCCC----eEEEecCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 834 SSSVEGSNIKEWRRHRKP----QISIAPEK--GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 834 s~S~dDgtI~IWDl~~~~----~i~~l~~h--~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
+.+ .||.|++||+.++. ....+.+| ...|++++|+|++++|++|+.||.|++||+.+
T Consensus 304 ~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 304 LGN-QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEC-TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEe-cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 776 78899999998875 34467777 78999999999999999999999999999853
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=4.1e-26 Score=251.28 Aligned_cols=239 Identities=12% Similarity=0.146 Sum_probs=184.3
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-EEEEeccCCCeEEec--c--CCCEEEEEecCCeEEEEe
Q 002389 686 DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-LIEVIATKEPIRKLD--T--YGKTIFASTQGHRMKVID 760 (929)
Q Consensus 686 ~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~-~~~~~~h~~~V~s~s--~--~g~~L~sgs~Dg~V~IWD 760 (929)
.+.+|.++|++++|+|+|++|+||+.|++|++||+.++... .....+|..+|.++. + +++.+++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 45799999999999999999999999999999999887643 334568999998754 3 378999999999999999
Q ss_pred CCCc----eeeec-cCCCeEEEEEe-C--CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc--
Q 002389 761 SSRT----LKDIY-RSKGIKSMSVV-Q--GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-- 829 (929)
Q Consensus 761 l~~~----~~~l~-~~~~V~sla~s-d--g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-- 829 (929)
+... ...+. +...|.+++|+ + +. +++|+.|+.|++||+..+..... ......|...+.++.++|+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV---KKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE---CCBTTSSSSCBCCCEECCCCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce---eeeeccccCCcceEEEccccCC
Confidence 8742 22333 34569999997 4 54 88899999999999987532211 13345677788888888763
Q ss_pred ---------------eEEEEEecCCCeEEEEECCCC---CeEEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEEE
Q 002389 830 ---------------LYSASSSVEGSNIKEWRRHRK---PQISIAPEKGTTIQAMAVVEDF----IYLNYNSSASSLQIW 887 (929)
Q Consensus 830 ---------------i~~~s~S~dDgtI~IWDl~~~---~~i~~l~~h~~~V~slafSpdg----~~LaSgS~DG~I~IW 887 (929)
.++++.+ .|++|++||.+.+ .....+.+|...|++++|+|++ .+|++|+.||+|++|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred ccccccccccCccccceEEEec-CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 3455554 7899999998754 3567788999999999999987 899999999999999
Q ss_pred ECCCC---c-EEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 888 LRGTQ---Q-KVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 888 dl~sg---~-~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++.+. + ....+..| ..|++++|+ +++|++|+.||+|++|+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 98762 1 12334455 459999886 779999999999999984
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-25 Score=280.40 Aligned_cols=278 Identities=10% Similarity=0.084 Sum_probs=202.8
Q ss_pred CCCCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCeeEEEEeccC------------------CCcEEEEEEcCCCC
Q 002389 646 HKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH------------------RKAVTSFSLFEPGE 704 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH------------------~~~Vtslafspdg~ 704 (929)
.+|.++|++++|++ +.+++|+.||+| +||+++++. +..+.+| ...|++++|+|+|+
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 58999999999994 389999999999 999998754 5666555 57899999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEEEe----c-------------cCCCeEEecc------CC-C---------------
Q 002389 705 SLLSGSADKTIGVWQMVQRKLELIEVI----A-------------TKEPIRKLDT------YG-K--------------- 745 (929)
Q Consensus 705 ~LaSgs~DgtIrIWDl~tg~~~~~~~~----~-------------h~~~V~s~s~------~g-~--------------- 745 (929)
+|+||+.||+|++||+.++++...... . +..+|.++.+ ++ .
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 999999999999999988775432111 0 1223433211 11 1
Q ss_pred -------------------------------------------------------------EEEEEecCCeEEEEeCCCc
Q 002389 746 -------------------------------------------------------------TIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 746 -------------------------------------------------------------~L~sgs~Dg~V~IWDl~~~ 764 (929)
.+++++.|+.|++||+...
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 3344444555666665311
Q ss_pred -e-ee-------ec-cCCCeEEEEE----------------------------------e-CCE-EEEEECCCcEEEEEc
Q 002389 765 -L-KD-------IY-RSKGIKSMSV----------------------------------V-QGK-IYIGCMDSSIQELAV 798 (929)
Q Consensus 765 -~-~~-------l~-~~~~V~sla~----------------------------------s-dg~-llsgs~Dg~I~iwDl 798 (929)
. .. +. ++..|+++++ + +++ +++|+.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 0 00 00 1123444443 3 455 888999999999999
Q ss_pred cCCccceecccc-----cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----------------------
Q 002389 799 SNNVEREIKAPF-----KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP---------------------- 851 (929)
Q Consensus 799 ~tg~~~~i~~~~-----~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~---------------------- 851 (929)
.++......... ..-.+|...|.+++++|++.++++.+ .||+|++||..+++
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC---------------CCSCCG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 887432100000 00126788999999999999988877 78999999987652
Q ss_pred -----------------------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE-----Ee-CC-
Q 002389 852 -----------------------QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR-----IS-AG- 901 (929)
Q Consensus 852 -----------------------~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~t-----l~-~h- 901 (929)
++..+.+|.+.|++++||||| +||+|+.||+|++||+.++..+.. +. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~ 622 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS 622 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc
Confidence 356788899999999999999 999999999999999988877653 22 56
Q ss_pred CCeEEEEEc-----C-----CEEEEEECCCcEEEeec
Q 002389 902 SKITSLLTA-----N-----DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 ~~Vtsvs~d-----g-----~~LaSgs~DG~I~IWdi 928 (929)
+.|++++|+ + ++|++|+.||+|++|++
T Consensus 623 ~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 623 ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 449999988 4 59999999999999996
No 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.94 E-value=2.1e-24 Score=235.22 Aligned_cols=233 Identities=13% Similarity=0.203 Sum_probs=198.6
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.+.|++++|+ +.+|++|+.||.|++||+.+++......+.+|...|++++|+|+++++++++.||.|++||+.+++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 789999999999 448999999999999999988755677888999999999999999999999999999999999887
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-EEEEECCCcEEEEEc
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAV 798 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl 798 (929)
... ....|...+.+ ++++++.+++++.|+.|++||+.. ....+.....+.+++++ ++. +++++.++.|++||+
T Consensus 175 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 175 LVR-QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eee-eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 443 34467788875 578899999999999999999874 33344456779999997 555 888999999999999
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg 878 (929)
.++.... ...|...+..+.++|++.++++.+ .|+.|++||..++..... ..|...|.+++|+|++++|+++
T Consensus 254 ~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 254 NKPDKYQ-------LHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp TSSCEEE-------ECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEE
T ss_pred CCCCeEE-------EcCCccceeEEEECCCCCEEEEec-CCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEe
Confidence 8865432 256788999999999998888776 789999999999887644 4578899999999999999999
Q ss_pred eCCCcEEEEEC
Q 002389 879 SSASSLQIWLR 889 (929)
Q Consensus 879 S~DG~I~IWdl 889 (929)
+.||.|++|++
T Consensus 325 ~~dg~i~iw~~ 335 (337)
T 1gxr_A 325 SGDKKATVYEV 335 (337)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCeEEEEEE
Confidence 99999999985
No 80
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1e-24 Score=237.00 Aligned_cols=242 Identities=12% Similarity=0.063 Sum_probs=193.3
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE---EEEEEeccCCCeEEe--cc--CCCEEEEEecCCeEEE
Q 002389 686 DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL---ELIEVIATKEPIRKL--DT--YGKTIFASTQGHRMKV 758 (929)
Q Consensus 686 ~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~---~~~~~~~h~~~V~s~--s~--~g~~L~sgs~Dg~V~I 758 (929)
.+.+|.++|++++|+|++++|++|+.||+|++||+.++.. ......+|..+|.++ .+ +++++++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 4579999999999999999999999999999999987642 233345788999875 45 4889999999999999
Q ss_pred EeCCCc-----------eeeecc-CCCeEEEEEe-C--CE-EEEEECCCcEEEEEccCCccceecc-------ccccccc
Q 002389 759 IDSSRT-----------LKDIYR-SKGIKSMSVV-Q--GK-IYIGCMDSSIQELAVSNNVEREIKA-------PFKSWRL 815 (929)
Q Consensus 759 WDl~~~-----------~~~l~~-~~~V~sla~s-d--g~-llsgs~Dg~I~iwDl~tg~~~~i~~-------~~~~~~~ 815 (929)
||+... ...+.. ...|.+++|+ + +. +++++.||.|++||+.++....... .......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 998742 233333 5669999997 4 55 8889999999999998865422110 0011124
Q ss_pred CCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECCCCCe--EEEecCCCCCeEEEEEecCC----CEEEEEeCCCcEEE
Q 002389 816 QSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDF----IYLNYNSSASSLQI 886 (929)
Q Consensus 816 ~~~~I~sl~~~~d---~i~~~s~S~dDgtI~IWDl~~~~~--i~~l~~h~~~V~slafSpdg----~~LaSgS~DG~I~I 886 (929)
+...+.++.++|+ +...++.+ .++.+.+|+...+.. ...+.+|...|++++|+|++ .+|++|+.||.|++
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred cccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 6778999999986 66666665 677888888777765 67788999999999999998 89999999999999
Q ss_pred EECCCC----------------------------------------------cEEEEEeCC-CCeEEEEEc--CCEEEEE
Q 002389 887 WLRGTQ----------------------------------------------QKVGRISAG-SKITSLLTA--NDIVLCG 917 (929)
Q Consensus 887 Wdl~sg----------------------------------------------~~i~tl~~h-~~Vtsvs~d--g~~LaSg 917 (929)
||+.++ +.+..+.+| ..|++++|+ +++|++|
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 998765 567778888 459999986 7799999
Q ss_pred ECCCcEEEeec
Q 002389 918 TETGLIKGWIP 928 (929)
Q Consensus 918 s~DG~I~IWdi 928 (929)
+.||.|++|++
T Consensus 325 ~~dg~v~iw~~ 335 (351)
T 3f3f_A 325 GDDGKVRLWKA 335 (351)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCcEEEEec
Confidence 99999999985
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=2.5e-24 Score=246.13 Aligned_cols=245 Identities=13% Similarity=0.188 Sum_probs=197.4
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
++|.+.|++|+|+ +.+|++|+.||+|+|||+.+++ .+..+.+|...|.+++| ++..|++|+.|+.+++||....
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc
Confidence 4789999999999 4499999999999999999885 47889999999999887 5678999999999999999887
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc------eeeec-cCCCeEEEEEe--CCE-EEE--EEC
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT------LKDIY-RSKGIKSMSVV--QGK-IYI--GCM 789 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~------~~~l~-~~~~V~sla~s--dg~-lls--gs~ 789 (929)
........+|...+.. +.+++.++++++.|+.+++|+.... ..... +...|.+++|. ++. +++ |+.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 6555666678888775 6789999999999999999998732 12222 34569999997 333 444 457
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEecCCCCCeEEEEE
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S-~dDgtI~IWDl~~~~~i~~l~~h~~~V~slaf 868 (929)
|+.|++||+.++...... .....+.++.+++++...++.+ ..|+.|++||..++..+..+.+|.+.|++++|
T Consensus 300 D~~I~iwd~~t~~~~~~~-------~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~ 372 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAV-------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 372 (420)
T ss_dssp TCEEEEEETTTTEEEEEE-------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCEEEEEeCCccccceee-------ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999987654332 2356788888888877665543 46799999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 869 VEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
+|||++|+||+.||+|+|||+....+....+.+
T Consensus 373 spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 373 SPDGATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp CTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred cCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 999999999999999999998877666555544
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=6.4e-25 Score=284.09 Aligned_cols=236 Identities=11% Similarity=0.138 Sum_probs=197.9
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEcc
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl~ 721 (929)
.+|.+.|++++|+ +.++++|+.||+|+|||+.+++. +..+.+|.++|++++|+|+ +..+++|+.||+|++||+.
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~ 731 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence 3899999999999 44999999999999999998854 7888999999999999994 5579999999999999999
Q ss_pred CCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeecc--------------CCCeEEEEEe-CC
Q 002389 722 QRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIYR--------------SKGIKSMSVV-QG 782 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~~--------------~~~V~sla~s-dg 782 (929)
++++.. ...+|..+|.+ |+++++.+++++.||.|++||+... ...+.. ...+.+++|+ +|
T Consensus 732 ~~~~~~-~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 732 QKECRN-TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp SSSEEE-EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred Ccchhh-eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 987543 44578888885 6789999999999999999998732 111111 2257788887 77
Q ss_pred EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCC
Q 002389 783 KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTT 862 (929)
Q Consensus 783 ~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~ 862 (929)
..++++.++.+.+||+.++..... ...+|...+.++.++|++.+.++.+ .++.|++||..++.....+.+|...
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAE-----IHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEE-----EECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEcCCcEEEEEecCCCceeE-----EcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeeecCCCccc
Confidence 766656689999999988765432 2246788999999999999888776 7789999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
|++++|+|+|+++++++.||.|++|+..
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 9999999999999999999999999843
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=244.38 Aligned_cols=245 Identities=12% Similarity=0.180 Sum_probs=192.0
Q ss_pred CCCCCEEEEEEe-C----CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEE------cCCCCEEEEEeCCCeE
Q 002389 647 KCSGAVTALIYY-K----GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSL------FEPGESLLSGSADKTI 715 (929)
Q Consensus 647 gH~~~Vtsl~fs-~----~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslaf------spdg~~LaSgs~DgtI 715 (929)
+|.++|++++|+ + .+|++|+.||.|++||+.+++ ..+..+.+|.+.|+++.| +|++++|++|+.||+|
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 689999999998 3 589999999999999999875 136788899999999954 6899999999999999
Q ss_pred EEEEccCCeEEEEEEeccC----CCeEEe------ccCCCEEEEEecCCeEEEEeCCCcee--eeccCCCeEEEEEe---
Q 002389 716 GVWQMVQRKLELIEVIATK----EPIRKL------DTYGKTIFASTQGHRMKVIDSSRTLK--DIYRSKGIKSMSVV--- 780 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~----~~V~s~------s~~g~~L~sgs~Dg~V~IWDl~~~~~--~l~~~~~V~sla~s--- 780 (929)
++||+.+++........+. ..+.++ +++++.+++++.||.|++||+..... .......|.+++|+
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 9999998762222222222 256554 48999999999999999999984332 23346679999996
Q ss_pred -CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCC-------
Q 002389 781 -QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRK------- 850 (929)
Q Consensus 781 -dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~------- 850 (929)
++. +++|+.||.|++||+.++........ .....|...+.++.++|++. ++++.+ .||.|++||+..+
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFAS-VSEKAHKSTVWQVRHLPQNRELFLTAG-GAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEE-EEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEEEECCSCC--CC
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceee-eccCCCcCCEEEEEECCCCCcEEEEEe-CCCcEEEeecCCCccccccc
Confidence 344 88899999999999988654322110 12237889999999999988 566555 7899999998643
Q ss_pred ------------CeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCcE
Q 002389 851 ------------PQISIAPEKGTTIQAMAVVEDFIYLN-YNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 851 ------------~~i~~l~~h~~~V~slafSpdg~~La-SgS~DG~I~IWdl~sg~~ 894 (929)
..+..+.+|...|++++|+|++++++ +|+.||.|++||+.+.+.
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 35667888999999999999999998 899999999999987654
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-24 Score=240.32 Aligned_cols=240 Identities=13% Similarity=0.148 Sum_probs=192.0
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE-EEEeccCCCeEEec--cC--CCEEEEEecCCeEEE
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL-IEVIATKEPIRKLD--TY--GKTIFASTQGHRMKV 758 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~-~~~~~h~~~V~s~s--~~--g~~L~sgs~Dg~V~I 758 (929)
+..+.+|.++|++++|+|++++|++|+.||.|++||+..+.... ....+|..+|.++. ++ ++++++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 56678999999999999999999999999999999998544333 33457888998754 44 899999999999999
Q ss_pred EeCCCc----eeeec-cCCCeEEEEEe-C--CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC--
Q 002389 759 IDSSRT----LKDIY-RSKGIKSMSVV-Q--GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-- 827 (929)
Q Consensus 759 WDl~~~----~~~l~-~~~~V~sla~s-d--g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-- 827 (929)
||+... ...+. +...|.+++|+ + +. +++++.|+.|++||+.++..... .....|...+.++.++|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----IIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE----EEEECCTTCEEEEEECCCC
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee----EEecCCCCceEEEEEcCcc
Confidence 998743 23333 35679999997 4 44 88999999999999988643222 23456788999999999
Q ss_pred -----------CceEEEEEecCCCeEEEEECCCCC----eEEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEEC
Q 002389 828 -----------DWLYSASSSVEGSNIKEWRRHRKP----QISIAPEKGTTIQAMAVVED---FIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 828 -----------d~i~~~s~S~dDgtI~IWDl~~~~----~i~~l~~h~~~V~slafSpd---g~~LaSgS~DG~I~IWdl 889 (929)
++.++++.+ .|+.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 577777666 67899999987654 45677889999999999999 899999999999999999
Q ss_pred CCCcE---EEEEeC--C-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 890 GTQQK---VGRISA--G-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 890 ~sg~~---i~tl~~--h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.++.. ...+.. | ..|++++|+ +++|++++.||.|++|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 88752 222222 3 449998875 779999999999999984
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=3.9e-24 Score=239.53 Aligned_cols=277 Identities=14% Similarity=0.141 Sum_probs=184.0
Q ss_pred CCCCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEE
Q 002389 646 HKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPG---ESLLSGSADKTIGVWQ 719 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg---~~LaSgs~DgtIrIWD 719 (929)
.+|.+.|++++|++ .++++|+.||.|++||+.+++. ...+ .|...+.++.|+|.+ .++++|+.||.|++||
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 36999999999983 3899999999999999998754 4444 478899999999854 4899999999999999
Q ss_pred ccCCeEEEEEEeccCCCeEE--eccCCC-EEEEEecCCeEEEEeCCCc---eeee----------------ccCCCeEEE
Q 002389 720 MVQRKLELIEVIATKEPIRK--LDTYGK-TIFASTQGHRMKVIDSSRT---LKDI----------------YRSKGIKSM 777 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s--~s~~g~-~L~sgs~Dg~V~IWDl~~~---~~~l----------------~~~~~V~sl 777 (929)
+.+++... ....|..+|.+ +++++. .+++++.||.|++||++.. ...+ .+...|.++
T Consensus 173 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSH-ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCE-EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceee-eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99887543 44568888886 567777 5889999999999998732 2221 224569999
Q ss_pred EEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 778 SVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 778 a~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
+|+ ++. +++++.||.|++||+.++.............................+..+. .|+.|++||..++..+..
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--ETTEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe--cCCEEEEEECcCCcceee
Confidence 997 554 8889999999999999876533221110001111112222222333333333 578999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
+.+|...|++++|+|++++|++|+.||.|++||+.+++.+.....+.....+.+. .....+++.||.+++|+.
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeecCC
Confidence 9999999999999999999999999999999999999988776655433333332 446677888999999973
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-23 Score=231.73 Aligned_cols=245 Identities=13% Similarity=0.139 Sum_probs=204.1
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEE
Q 002389 682 MLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVI 759 (929)
Q Consensus 682 ~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IW 759 (929)
.....+.+|.++|++++|+|+|++|++|+.||.|++||+.+++.. ....+|...|.+ |+++++++++++.||.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL-GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh-hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 456778999999999999999999999999999999999988754 344568888886 56889999999999999999
Q ss_pred eCC--CceeeeccCCCeEEEEEe-CCE-EEEEECC-----CcEEEEEccCCccceec-----ccccccccCCC--CeEEE
Q 002389 760 DSS--RTLKDIYRSKGIKSMSVV-QGK-IYIGCMD-----SSIQELAVSNNVEREIK-----APFKSWRLQSK--PINSL 823 (929)
Q Consensus 760 Dl~--~~~~~l~~~~~V~sla~s-dg~-llsgs~D-----g~I~iwDl~tg~~~~i~-----~~~~~~~~~~~--~I~sl 823 (929)
|+. .....+.....+.+++|+ ++. +++++.+ +.|++||+..+...... .+......+.. .+.++
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 987 344555567789999998 555 7778888 99999999876432110 01122233333 89999
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCC-CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC
Q 002389 824 VVYKDWLYSASSSVEGSNIKEWRRHR-KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS 902 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~ 902 (929)
.+++++.++++.+ .|+.|++||+.+ +.....+..|...|.+++|+|++.+|++++.||.|++||+.+++.+..+..+.
T Consensus 182 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 260 (369)
T 3zwl_B 182 GWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC 260 (369)
T ss_dssp EECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence 9999988877766 778999999988 77888899999999999999999999999999999999999999999999777
Q ss_pred CeEEEEEc--CCEEEEEECCC--------------cEEEeec
Q 002389 903 KITSLLTA--NDIVLCGTETG--------------LIKGWIP 928 (929)
Q Consensus 903 ~Vtsvs~d--g~~LaSgs~DG--------------~I~IWdi 928 (929)
.+.+++|+ ++++++++.++ .+++|+.
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 79888876 77999999998 8999985
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=1.1e-23 Score=228.32 Aligned_cols=238 Identities=13% Similarity=0.166 Sum_probs=194.1
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.++|...|++++|+ +.++++|+.||+|++||+.+++ .+..+.+|...+.++.+ ++..+++|+.++.+++|+..+
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~--~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~ 138 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV 138 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce--eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCC
Confidence 35799999999999 4599999999999999999885 47888999999887665 567899999999999999988
Q ss_pred CeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCce------e-eeccCCCeEEEEEe--CCEE---EEEE
Q 002389 723 RKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL------K-DIYRSKGIKSMSVV--QGKI---YIGC 788 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~------~-~l~~~~~V~sla~s--dg~l---lsgs 788 (929)
+........+|...+.. +.++++++++++.|+.|++||+.... . .......|.++.+. ++.+ .+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 76666666778887775 57889999999999999999987311 1 11224568888886 2322 3466
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S-~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
.++.|++||...+..... ..+...+..+.++++....+..+ ..|+.|++||..++..+..+.+|.+.|++++
T Consensus 219 ~~~~i~lwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSA-------VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp TTCEEEEEETTTCCEEEE-------EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEeccccccccc-------ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 789999999987654332 33467788888888877655443 4689999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCc
Q 002389 868 VVEDFIYLNYNSSASSLQIWLRGTQQ 893 (929)
Q Consensus 868 fSpdg~~LaSgS~DG~I~IWdl~sg~ 893 (929)
|+|||++|+|||.||+|+|||+....
T Consensus 292 ~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 292 MSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999999999999987654
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=5.6e-24 Score=244.18 Aligned_cols=234 Identities=15% Similarity=0.210 Sum_probs=198.7
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
+....+|..+|+++.| +++++++|+.||+|++||+.+++.. ....+|..+|.++..+++.+++|+.||+|++||+..
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK-RILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE-EEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 3444567888998887 8899999999999999999988754 345579999999999999999999999999999873
Q ss_pred --ceeeecc-CCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 764 --TLKDIYR-SKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 764 --~~~~l~~-~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
....+.. ...|.+++++++.+++|+.||.|++||+.++...... ....+|...+.++.+.. .++++++ .|+
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~--~~l~s~~-~dg 276 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR---RVLVGHRAAVNVVDFDD--KYIVSAS-GDR 276 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE---EEECCCSSCEEEEEEET--TEEEEEE-TTS
T ss_pred CcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceee---eEecCCCCcEEEEEeCC--CEEEEEe-CCC
Confidence 3334433 4569999999889999999999999999886543221 34467888999999843 4445554 689
Q ss_pred eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEcCCEEEEEEC
Q 002389 841 NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTANDIVLCGTE 919 (929)
Q Consensus 841 tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~dg~~LaSgs~ 919 (929)
.|++||..++..+..+.+|...|.++.| ++.++++|+.||.|++||+.+++.+.++.+|. .|++++|++++|++|+.
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~ 354 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 354 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeC
Confidence 9999999999999999999999999998 47899999999999999999999999999985 49999999999999999
Q ss_pred CCcEEEeec
Q 002389 920 TGLIKGWIP 928 (929)
Q Consensus 920 DG~I~IWdi 928 (929)
||.|++||+
T Consensus 355 dg~i~vwd~ 363 (435)
T 1p22_A 355 DGKIKVWDL 363 (435)
T ss_dssp TSCEEEEEH
T ss_pred CCcEEEEEC
Confidence 999999985
No 89
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.93 E-value=4.1e-24 Score=260.65 Aligned_cols=240 Identities=15% Similarity=0.159 Sum_probs=197.1
Q ss_pred EEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCe----EEEEEEeccCCCeEE--eccCCCEEEEEecCCeE
Q 002389 684 VWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRK----LELIEVIATKEPIRK--LDTYGKTIFASTQGHRM 756 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~tg~----~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V 756 (929)
...+++|.+.|++++|+|++ +.|+||+.||+|++||+.++. .......+|...|.+ ++++++++++++.|++|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 45678999999999999875 679999999999999997642 223445689998885 67899999999999999
Q ss_pred EEEeCCC--ceeeecc-CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc--
Q 002389 757 KVIDSSR--TLKDIYR-SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW-- 829 (929)
Q Consensus 757 ~IWDl~~--~~~~l~~-~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~-- 829 (929)
++||+.. ....+.. ...|.+++|+ ++. +++|+.|++|++||........+. ....+|...|.++.++|++
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS---EGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC---SSTTSCSSCEEEEEECSCSSS
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec---cCCCCCCCcEEEEEEeCCCCc
Confidence 9999974 3334443 5569999998 555 999999999999998654332221 2224678889999999986
Q ss_pred eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 002389 830 LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT 909 (929)
Q Consensus 830 i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~ 909 (929)
..+++.+ .|++|++||+.++.....+.+|...|++++|+|+|++|++|+.||+|++||+.+++.+..+..+..|++++|
T Consensus 532 ~~l~s~s-~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 610 (694)
T 3dm0_A 532 PTIVSAS-WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610 (694)
T ss_dssp CEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEE
T ss_pred ceEEEEe-CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEE
Confidence 3556555 789999999999999999999999999999999999999999999999999999999999888888999888
Q ss_pred c--CCEEEEEECCCcEEEeec
Q 002389 910 A--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 910 d--g~~LaSgs~DG~I~IWdi 928 (929)
+ +.+++++ .|+.|++||+
T Consensus 611 sp~~~~l~~~-~~~~i~iwd~ 630 (694)
T 3dm0_A 611 SPNRYWLCAA-TEHGIKIWDL 630 (694)
T ss_dssp CSSSSEEEEE-ETTEEEEEET
T ss_pred cCCCcEEEEE-cCCCEEEEEC
Confidence 7 4456555 4566999985
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.93 E-value=6.8e-24 Score=261.46 Aligned_cols=271 Identities=13% Similarity=0.088 Sum_probs=219.1
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.++|++++|+ +.+|++|+.||.|++||+.+++. +..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence 899999999999 44999999999999999998854 77888999999999999999999999999999999999875
Q ss_pred EEEEEEeccCCCeEE--ecc-CCCEEEEEecCCeEEEEeCCC--ceeeecc--CCCeEEEEEe---CCE-EEEEECCCcE
Q 002389 725 LELIEVIATKEPIRK--LDT-YGKTIFASTQGHRMKVIDSSR--TLKDIYR--SKGIKSMSVV---QGK-IYIGCMDSSI 793 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~-~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~--~~~V~sla~s---dg~-llsgs~Dg~I 793 (929)
.......+|..+|.+ |+| +++.+++++.||.|++||+.. ....+.. ...+.+++|+ ++. +++|+.||.|
T Consensus 131 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 455566678888886 566 678999999999999999863 2223322 2668899985 454 8889999999
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
++||+.++... ..+..|...+.++.++|++.++++.+ .||.|++||..++.....+..|...+.+++|+|+|.
T Consensus 211 ~~~d~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 211 KIWDYQTKSCV------ATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp EEEETTTTEEE------EEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred EEEECCCCcEE------EEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence 99999886543 23456788999999999998888776 678999999999999999999999999999999987
Q ss_pred --EEEEEeCCCcEEEEECCCCcEEEEEe-------------------------------------------CC-CCeEEE
Q 002389 874 --YLNYNSSASSLQIWLRGTQQKVGRIS-------------------------------------------AG-SKITSL 907 (929)
Q Consensus 874 --~LaSgS~DG~I~IWdl~sg~~i~tl~-------------------------------------------~h-~~Vtsv 907 (929)
++++|+ |+.+.+|+...+.....+. .+ ..++++
T Consensus 284 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 284 KNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred ceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 466665 7778899876543322221 11 125666
Q ss_pred EEc--CCEEEEEECCCcEEEeec
Q 002389 908 LTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 908 s~d--g~~LaSgs~DG~I~IWdi 928 (929)
+|+ |+++++++ ||.+.+|+.
T Consensus 363 ~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 363 AHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp EECTTSSEEEEEE-TTEEEEEET
T ss_pred EECCCCCEEEEec-CCEEEEEEC
Confidence 654 77888888 888999974
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=6.2e-24 Score=241.15 Aligned_cols=243 Identities=15% Similarity=0.175 Sum_probs=193.9
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+|.+.|++++|+ +.+|++|+.||.|++||+.+++. +..+.+|...|.+++| +++.+++|+.||.|++||++.+.
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK--LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE--EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 489999999999 44999999999999999998754 7888999999999999 56799999999999999998655
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc--eeeec-cCCCeEEEEEe-CC-E-EEEEE--CCCcEE
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT--LKDIY-RSKGIKSMSVV-QG-K-IYIGC--MDSSIQ 794 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~--~~~l~-~~~~V~sla~s-dg-~-llsgs--~Dg~I~ 794 (929)
.......+|...|.+ +++++..+++++.|+.|++||+... ...+. +...|.+++|+ ++ . +++|+ .|+.|+
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 455566678888886 5688999999999999999999842 33333 35679999997 34 3 44444 699999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEE--EecCCCCCeEEEEEecC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQIS--IAPEKGTTIQAMAVVED 871 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S-~dDgtI~IWDl~~~~~i~--~l~~h~~~V~slafSpd 871 (929)
+||+.++...... .+...+.++.+++++.+.++.+ ..||.|++||..++.... .+.+|...|.+++|+|+
T Consensus 288 i~d~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 288 FWNAATGARVNTV-------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp EEETTTCCEEEEE-------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred EEECCCCCEEEEE-------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence 9999987654321 2467899999999988877653 368999999998865444 46789999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i~tl~~ 900 (929)
|++|++++.||.|++|++.+++.+.....
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 389 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGDHVKRPIP 389 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC---------
T ss_pred CCEEEEEeCCCcEEEEECCCCcccccccc
Confidence 99999999999999999999988766543
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-23 Score=226.65 Aligned_cols=241 Identities=15% Similarity=0.200 Sum_probs=197.5
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCC-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~-~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
+|.+.|++++|+ +.++++|+.||.|++|++.... ...+..+.+|..+|.+++| +++++++|+.||.|++|| .+
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~ 132 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG 132 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC
Confidence 789999999999 4499999999999999987643 2346778899999999999 678999999999999999 44
Q ss_pred eEEEEEEeccCCCeEEe--cc-CCCEEEEEecCCeEEEEeCCCceeeecc--CCCeEEEEEe-CCEEEEEECCCcEEEEE
Q 002389 724 KLELIEVIATKEPIRKL--DT-YGKTIFASTQGHRMKVIDSSRTLKDIYR--SKGIKSMSVV-QGKIYIGCMDSSIQELA 797 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~--s~-~g~~L~sgs~Dg~V~IWDl~~~~~~l~~--~~~V~sla~s-dg~llsgs~Dg~I~iwD 797 (929)
+ .......|..++.++ .+ +++.+++++.|+.|++||.......+.. ...+.+++++ ++.+++++.||.|++||
T Consensus 133 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d 211 (313)
T 3odt_A 133 S-LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211 (313)
T ss_dssp E-EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred c-EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEE
Confidence 4 333445678888754 34 8999999999999999997766665553 5569999997 88899999999999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+.+++.. ..+..|...+.++.++|++. .++.+ .|+.|++||..++.....+..|...|.+++|+|+++ +++
T Consensus 212 ~~~~~~~------~~~~~~~~~i~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 282 (313)
T 3odt_A 212 MHTGDVL------RTYEGHESFVYCIKLLPNGD-IVSCG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV 282 (313)
T ss_dssp TTTCCEE------EEEECCSSCEEEEEECTTSC-EEEEE-TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE
T ss_pred CCchhhh------hhhhcCCceEEEEEEecCCC-EEEEe-cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE
Confidence 9886543 33456889999999999984 44444 789999999999999999999999999999999999 567
Q ss_pred EeCCCcEEEEECCCCcEEEEEeCC
Q 002389 878 NSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
++.||.|++||+.+++.+......
T Consensus 283 ~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 283 GSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp EETTSCEEEEESCGGGCCC-----
T ss_pred EeCCCcEEEEeCCCCceeehhhhh
Confidence 889999999999988776555443
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=5.8e-24 Score=238.36 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=199.9
Q ss_pred CCCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~L-aSgs~DgtIrIWDl~t 722 (929)
.+|.+.|++++|+ ++ +|++|+.|| ++|||..+.+. .... +...+..+++.++++.+ ++|+.|++|++||..+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH--IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE--EEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce--eeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4799999999999 44 777777665 78999987643 2222 22358888999998886 5788899999999999
Q ss_pred CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCc---eeeeccCCCeEEEEEeCCEEEE--EECCCcEEEEE
Q 002389 723 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRT---LKDIYRSKGIKSMSVVQGKIYI--GCMDSSIQELA 797 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~---~~~l~~~~~V~sla~sdg~lls--gs~Dg~I~iwD 797 (929)
++..... .+..+|.++..+++.++++ .|+.|++||+... ...+.. ....++++.+.+++ |+.||.|++||
T Consensus 91 ~~~~~~~--~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd 165 (355)
T 3vu4_A 91 KQDVSRI--KVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITK 165 (355)
T ss_dssp TEEEEEE--ECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEE
T ss_pred CcEEEEE--ECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEE
Confidence 9765433 4677899888777777665 4789999998743 222222 33334444566555 57899999999
Q ss_pred ccCCccce---------eccc-ccccccCCCCeEEEEEcCCceEEEEEecCCCe-EEEEECCCCCeEEEec-C-CCCCeE
Q 002389 798 VSNNVERE---------IKAP-FKSWRLQSKPINSLVVYKDWLYSASSSVEGSN-IKEWRRHRKPQISIAP-E-KGTTIQ 864 (929)
Q Consensus 798 l~tg~~~~---------i~~~-~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgt-I~IWDl~~~~~i~~l~-~-h~~~V~ 864 (929)
+.++.... ...| ...+.+|..+|.++.++|++.++++.+ .|++ |++||..++..+..+. + |...|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~ 244 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QDGTIIRVFKTEDGVLVREFRRGLDRADVV 244 (355)
T ss_dssp CCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence 98754100 0011 355678999999999999999988887 7788 9999999999888887 5 999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcE--EEEE--------------------eCC--CCeEEEEEc--CCEEEEEE
Q 002389 865 AMAVVEDFIYLNYNSSASSLQIWLRGTQQK--VGRI--------------------SAG--SKITSLLTA--NDIVLCGT 918 (929)
Q Consensus 865 slafSpdg~~LaSgS~DG~I~IWdl~sg~~--i~tl--------------------~~h--~~Vtsvs~d--g~~LaSgs 918 (929)
+++|+|+|++|++|+.||+|++||+..+.. ...+ ... .....++|+ ++.+++++
T Consensus 245 ~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~ 324 (355)
T 3vu4_A 245 DMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324 (355)
T ss_dssp EEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred EEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence 999999999999999999999999876532 1111 111 112445664 77999999
Q ss_pred CCCcEEEeec
Q 002389 919 ETGLIKGWIP 928 (929)
Q Consensus 919 ~DG~I~IWdi 928 (929)
.||.+++|++
T Consensus 325 ~dg~~~~~~~ 334 (355)
T 3vu4_A 325 HTRMIETFKV 334 (355)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999974
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=7.5e-24 Score=234.81 Aligned_cols=238 Identities=7% Similarity=0.001 Sum_probs=196.4
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE-EEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE-LIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~-~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
+..|.++|++++|+|++++|++|+.||.|++||+.+++.. .....+|...|.+ |+++++++++++.||.|++||+..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 3459999999999999999999999999999999988632 2334478888885 578899999999999999999874
Q ss_pred ce--ee---eccCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 764 TL--KD---IYRSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 764 ~~--~~---l~~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
.. .. ..+...|.+++|+ ++. +++++.|+.|++||+..+...... ......|...+.++.++|++.++++.+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC--KHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE--EEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee--eeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 32 11 2235679999997 554 888999999999999886532111 122245688999999999998888776
Q ss_pred cCCCeEEEEEC------------------CCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 002389 837 VEGSNIKEWRR------------------HRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 837 ~dDgtI~IWDl------------------~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl 898 (929)
.|+.|++||. ..+..+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++.+..+
T Consensus 162 -~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 162 -CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp -TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred -CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 7889999995 467788888899999999999999999999999999999999999999999
Q ss_pred eCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 899 SAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 899 ~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
..|. +|++++|+ ++++++| .||.|++|++
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 9885 69998876 6666666 9999999985
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.8e-25 Score=251.94 Aligned_cols=246 Identities=12% Similarity=0.125 Sum_probs=196.3
Q ss_pred EEECCCCCeeEEEEe-ccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccC---CeEE-EEEEeccCCCeEE--eccCC
Q 002389 673 MWDIKKQSAMLVWDV-KEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQ---RKLE-LIEVIATKEPIRK--LDTYG 744 (929)
Q Consensus 673 IWD~~~~~~~~i~~l-~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~t---g~~~-~~~~~~h~~~V~s--~s~~g 744 (929)
.|+... ..+..+ .+|.++|++++|+| ++++|+||+.||+|++||+.+ +... .....+|..+|.+ |.+++
T Consensus 47 ~w~~~g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 47 MGNLRG---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF 123 (437)
T ss_dssp GGGCCC---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS
T ss_pred cccccc---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC
Confidence 387554 347788 89999999999999 999999999999999999976 4311 2333368888986 56788
Q ss_pred CEEEEEecCCeEEEEeCC----Ccee---------eec-----cCCCeEEEEEe---CCE-EEEEECCCcEEEEEccCCc
Q 002389 745 KTIFASTQGHRMKVIDSS----RTLK---------DIY-----RSKGIKSMSVV---QGK-IYIGCMDSSIQELAVSNNV 802 (929)
Q Consensus 745 ~~L~sgs~Dg~V~IWDl~----~~~~---------~l~-----~~~~V~sla~s---dg~-llsgs~Dg~I~iwDl~tg~ 802 (929)
+.+++++.||.|++||+. +... .+. ....+.++.+. ++. +++|+.|+.|++||+.+++
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 999999999999999984 1111 111 23446666643 455 8889999999999998866
Q ss_pred cceeccccccccc--CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec-CCCCCeEEEEEe----cCCCEE
Q 002389 803 EREIKAPFKSWRL--QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP-EKGTTIQAMAVV----EDFIYL 875 (929)
Q Consensus 803 ~~~i~~~~~~~~~--~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~-~h~~~V~slafS----pdg~~L 875 (929)
.... +.. |...|.++.++|++.++++.+ .||.|++||++.+..+..+. +|...|++++|+ |++.++
T Consensus 204 ~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 204 RLQI------IENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp EEEE------EECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred eeEE------EccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEE
Confidence 4332 233 678999999999998888877 78999999999998888775 788899999665 568899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEeCCC---------------------------CeEEEEEc-CCEEEEEECCCcEEEee
Q 002389 876 NYNSSASSLQIWLRGTQQKVGRISAGS---------------------------KITSLLTA-NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 876 aSgS~DG~I~IWdl~sg~~i~tl~~h~---------------------------~Vtsvs~d-g~~LaSgs~DG~I~IWd 927 (929)
++|+.||.|++||+.+++.+..+.+|. .|++++|+ +++|++|+.||.|++||
T Consensus 277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFS 356 (437)
T ss_dssp EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEE
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEE
Confidence 999999999999999999998888552 27777776 56899999999999999
Q ss_pred c
Q 002389 928 P 928 (929)
Q Consensus 928 i 928 (929)
+
T Consensus 357 ~ 357 (437)
T 3gre_A 357 L 357 (437)
T ss_dssp T
T ss_pred C
Confidence 5
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.6e-24 Score=265.48 Aligned_cols=235 Identities=16% Similarity=0.132 Sum_probs=178.2
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
.||.+.|++++|+ +.+||+|+.||+|+|||..+.+. ...+ .|..+|++++|+| |++|++++.|++|++||+.++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--VIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--EEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--EEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 4899999999999 34999999999999999987643 3333 5889999999999 889999999999999999998
Q ss_pred eEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceee-------------ec-cCCCeEEEEEe-C--CEE
Q 002389 724 KLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD-------------IY-RSKGIKSMSVV-Q--GKI 784 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~-------------l~-~~~~V~sla~s-d--g~l 784 (929)
++.... .+...|.+ |+++++++++|+.||+|++||+...... .. +...|.+++|+ + +.+
T Consensus 90 ~~~~~~--~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 90 KVLTTV--FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp SEEEEE--ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred cEEEEE--cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 765443 35667775 5789999999999999999999853321 11 23569999998 3 348
Q ss_pred EEEECCCcEEEEEccCCccceecccc------------cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe
Q 002389 785 YIGCMDSSIQELAVSNNVEREIKAPF------------KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 785 lsgs~Dg~I~iwDl~tg~~~~i~~~~------------~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
++|+.||.| +||+.+++........ ..+..|...|.++.++|++.++++.+ .|++|++||..+++.
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs-~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH-EDNSLVFWDANSGHM 245 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE-TTCCEEEEETTTCCE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCcE
Confidence 889999999 9999987643322111 11233457899999999999888887 789999999988887
Q ss_pred EEE--e---cC-------------CCCCeEEEEEec----CC-CEEEEEeCC-----CcEEEEE
Q 002389 853 ISI--A---PE-------------KGTTIQAMAVVE----DF-IYLNYNSSA-----SSLQIWL 888 (929)
Q Consensus 853 i~~--l---~~-------------h~~~V~slafSp----dg-~~LaSgS~D-----G~I~IWd 888 (929)
+.. + .+ |...|++++|++ ++ .++++|+.| +.+.+|+
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 653 2 11 345799999953 33 456666544 2455555
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-23 Score=239.13 Aligned_cols=272 Identities=10% Similarity=0.063 Sum_probs=210.6
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCee-EEEEec--------------------------------------
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAM-LVWDVK-------------------------------------- 688 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~-~i~~l~-------------------------------------- 688 (929)
..++.+++|+ ++.+++++.++.|++||+.+++.. .+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 3578999998 454555556889999999887610 233332
Q ss_pred ----------------cCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcc--CCeEEEEEE-eccCCCeEE--eccCCCE
Q 002389 689 ----------------EHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMV--QRKLELIEV-IATKEPIRK--LDTYGKT 746 (929)
Q Consensus 689 ----------------gH~~~Vtslafspdg~~L-aSgs~DgtIrIWDl~--tg~~~~~~~-~~h~~~V~s--~s~~g~~ 746 (929)
+|.+.|++++|+|+|++| ++|+.||+|++||+. +++...... ..+...|.+ |++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 345579999999999996 899999999999998 776544332 256677765 6789999
Q ss_pred EEEEecCCeEEEEeCCCcee------eec-cCCCeEEEEEe-C---CE-EEEEECCCcEEEEEccCCccceecccccccc
Q 002389 747 IFASTQGHRMKVIDSSRTLK------DIY-RSKGIKSMSVV-Q---GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWR 814 (929)
Q Consensus 747 L~sgs~Dg~V~IWDl~~~~~------~l~-~~~~V~sla~s-d---g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~ 814 (929)
+++++.+|.+++|++..... .+. +...|.+++|+ + +. +++|+.|+.|++||+.++..... ...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----~~~ 238 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-----WLF 238 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-----ECC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-----eec
Confidence 99999999999999863221 333 34679999997 6 75 88899999999999987654321 134
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-------------------------CCCCeEEEEEe
Q 002389 815 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-------------------------KGTTIQAMAVV 869 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-------------------------h~~~V~slafS 869 (929)
+|...|.++.++ ++.++++.+ .|++|++||+.++..+..+.. +...|.+++|+
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 678999999999 888888777 789999999999987776652 23579999999
Q ss_pred cCCCEEEEEe-CCCcEEEEEC--CCC---cEEEEEeCCCCeEEEEEcCC-EEEEEEC-------CCcEEEee
Q 002389 870 EDFIYLNYNS-SASSLQIWLR--GTQ---QKVGRISAGSKITSLLTAND-IVLCGTE-------TGLIKGWI 927 (929)
Q Consensus 870 pdg~~LaSgS-~DG~I~IWdl--~sg---~~i~tl~~h~~Vtsvs~dg~-~LaSgs~-------DG~I~IWd 927 (929)
|+++++++++ .|+.|++|++ .++ +.+..+..|..|++++|+++ .+++.+. ++.|.+|.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 9999999999 8999999999 665 67888988888999999865 4444333 45588885
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=1.8e-24 Score=245.15 Aligned_cols=272 Identities=13% Similarity=0.106 Sum_probs=204.8
Q ss_pred EEEEEEeCC---EEEEEECCCeEEEEECCCCCe--eEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCeE
Q 002389 652 VTALIYYKG---LLCSGFSDGSIKMWDIKKQSA--MLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 652 Vtsl~fs~~---~LaSGs~DGtIrIWD~~~~~~--~~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
...+++++. ++++|+.||.|+||++..... ..+..+.+|.++|++++|+| ++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 345777755 345689999999999965421 12446789999999999999 899999999999999999988732
Q ss_pred ------EEEEEeccCCCeEE--eccCC-CEEEEEecCCeEEEEeCCC--ceeee--c-cCCCeEEEEEe-CCE-EEEEEC
Q 002389 726 ------ELIEVIATKEPIRK--LDTYG-KTIFASTQGHRMKVIDSSR--TLKDI--Y-RSKGIKSMSVV-QGK-IYIGCM 789 (929)
Q Consensus 726 ------~~~~~~~h~~~V~s--~s~~g-~~L~sgs~Dg~V~IWDl~~--~~~~l--~-~~~~V~sla~s-dg~-llsgs~ 789 (929)
......+|...|.+ |++++ +.+++++.|+.|++||+.. ....+ . +...|.+++|+ ++. +++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 23345578888886 56776 6899999999999999884 33344 2 35679999998 665 889999
Q ss_pred CCcEEEEEccCCccceecccccccccCCC-CeEEEEEcCCceEEEEEe--cCCCeEEEEECCCCCe-E-EEecCCCCCeE
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSK-PINSLVVYKDWLYSASSS--VEGSNIKEWRRHRKPQ-I-SIAPEKGTTIQ 864 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~-~I~sl~~~~d~i~~~s~S--~dDgtI~IWDl~~~~~-i-~~l~~h~~~V~ 864 (929)
|+.|++||+.++...... ...|.. .+..+.+++++.++++.. ..|+.|++||..++.. . .....|...+.
T Consensus 197 d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEK-----DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp TSEEEEEETTTTEEEEEE-----ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred CCcEEEEeCCCCceeeee-----ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 999999999986543221 023444 488999999988877662 3688999999987553 2 23335778899
Q ss_pred EEEEecCCCEEE-EEeCCCcEEEEECCCCcE-EEEEeC---CCCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 865 AMAVVEDFIYLN-YNSSASSLQIWLRGTQQK-VGRISA---GSKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 865 slafSpdg~~La-SgS~DG~I~IWdl~sg~~-i~tl~~---h~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
+++|+|++++++ +|+.||.|++||+.+++. +..+.. +..|++++|+++..+.++.|+.+++|++
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l 340 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKL 340 (402)
T ss_dssp EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEc
Confidence 999999999996 455799999999998874 444443 3569999887442222346779999984
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-24 Score=266.11 Aligned_cols=244 Identities=13% Similarity=0.161 Sum_probs=199.2
Q ss_pred cCCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEEc
Q 002389 645 SHKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP--GESLLSGSADKTIGVWQM 720 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd--g~~LaSgs~DgtIrIWDl 720 (929)
..+|.++|++++|+ +++|++|+.||+|+|||+.++....+..+.+|.++|++++|+|+ +++|++|+.||+|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 45899999999999 44899999999999999986666678889999999999999988 999999999999999999
Q ss_pred cCCeEEE-EEEeccCCCeEE--eccC--CCEEEEEecCCeEEEEeCCCc----eeee-ccCCCeEEEEEeC---------
Q 002389 721 VQRKLEL-IEVIATKEPIRK--LDTY--GKTIFASTQGHRMKVIDSSRT----LKDI-YRSKGIKSMSVVQ--------- 781 (929)
Q Consensus 721 ~tg~~~~-~~~~~h~~~V~s--~s~~--g~~L~sgs~Dg~V~IWDl~~~----~~~l-~~~~~V~sla~sd--------- 781 (929)
.+++... ....+|..+|.+ ++++ ++.+++++.||.|++||+... ...+ .+...|.++.|+.
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 9986433 334468888886 5677 889999999999999998743 2222 2356799999963
Q ss_pred -----CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECCCCC-
Q 002389 782 -----GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRHRKP- 851 (929)
Q Consensus 782 -----g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d---~i~~~s~S~dDgtI~IWDl~~~~- 851 (929)
+. +++|+.||.|++||+.++..... ....+.+|..+|.++.++|+ +.++++++ .||.|++||..++.
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYV--LESTLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQG 241 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEE--EEEEECCCSSCEEEEEECCCCSSSEEEEEEE-SSSCEEEEEESSSSS
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccce--eeeeecCCCCcEEEEEeccCCCCCCEEEEEe-cCCEEEEecCCCCCC
Confidence 44 88999999999999988643211 12345678899999999999 78888776 78899999988763
Q ss_pred ----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 852 ----QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 852 ----~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
......+|...|++++|+|+|+++++|+.||.|++|++.+
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 2334456888999999999999999999999999999874
No 100
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=1.3e-23 Score=235.75 Aligned_cols=241 Identities=10% Similarity=0.048 Sum_probs=198.8
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe-----EEEEEEeccCCCeEE--eccC----C---CEEE
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK-----LELIEVIATKEPIRK--LDTY----G---KTIF 748 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~-----~~~~~~~~h~~~V~s--~s~~----g---~~L~ 748 (929)
....+.+|.++|++++|+| ++|++|+.||+|++||+.+++ .......+|..+|.+ |+++ + ++++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3566789999999999998 799999999999999999876 112344478888886 5677 8 8999
Q ss_pred EEecCCeEEEEeCCC--c-----eeeeccC------CCeEEEEEe------CCE-EEEEECCCcEEEEEccC------Cc
Q 002389 749 ASTQGHRMKVIDSSR--T-----LKDIYRS------KGIKSMSVV------QGK-IYIGCMDSSIQELAVSN------NV 802 (929)
Q Consensus 749 sgs~Dg~V~IWDl~~--~-----~~~l~~~------~~V~sla~s------dg~-llsgs~Dg~I~iwDl~t------g~ 802 (929)
+++.||.|++||+.. . ...+..+ ..|.+++|+ ... +++++.||.|++||+.+ +.
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999872 2 4445444 679999997 345 78899999999999988 44
Q ss_pred cceeccccccc-------ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---C---CCCeEEEEEe
Q 002389 803 EREIKAPFKSW-------RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---K---GTTIQAMAVV 869 (929)
Q Consensus 803 ~~~i~~~~~~~-------~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~---h---~~~V~slafS 869 (929)
..... +...+ ..+...+.++.++|++ ++++.+ .|+.|++||++++..+..+.. | ...|.+++|+
T Consensus 166 ~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 166 TLNWS-PTLELQGTVESPMTPSQFATSVDISERG-LIATGF-NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TTCCC-CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeecc-CcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-CCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 33211 11122 3468889999999999 666655 789999999999998888888 9 9999999999
Q ss_pred cCCCEEEEEeCC---CcEEEEECCCCcEEEEEeC-------------C-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 870 EDFIYLNYNSSA---SSLQIWLRGTQQKVGRISA-------------G-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 870 pdg~~LaSgS~D---G~I~IWdl~sg~~i~tl~~-------------h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
|++.+|++++.| |.|++||+.+++.+..+.+ | ..|++++|+ +++|++|+.||.|++||+
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999999 9999999999999999998 6 459999886 789999999999999986
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=2.6e-23 Score=234.32 Aligned_cols=242 Identities=12% Similarity=0.127 Sum_probs=184.5
Q ss_pred cCCCCCCEEEEEEeCCEEEEEE-----------CCCeEEEEECCCCCee--EEEEe-----ccCCCcEEEEEEcCCCCEE
Q 002389 645 SHKCSGAVTALIYYKGLLCSGF-----------SDGSIKMWDIKKQSAM--LVWDV-----KEHRKAVTSFSLFEPGESL 706 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~~~LaSGs-----------~DGtIrIWD~~~~~~~--~i~~l-----~gH~~~Vtslafspdg~~L 706 (929)
..+|.+.|.+++++++.+++|+ .|+++++|++.+.... ..... ..+...+.+++|+|||+++
T Consensus 69 l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l 148 (365)
T 4h5i_A 69 LEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA 148 (365)
T ss_dssp CCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred ccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE
Confidence 3478999999999988777764 5788999998765422 12221 2345669999999999997
Q ss_pred EE--EeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceee--e-c-cCCCeEEEE
Q 002389 707 LS--GSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKD--I-Y-RSKGIKSMS 778 (929)
Q Consensus 707 aS--gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~--l-~-~~~~V~sla 778 (929)
++ ++.|++|+|||+.+++.... ..|...|.+ |+|+++++++++.++.+.+|...+.... . . +...|.+++
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~~--~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKFE--IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEEE--EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEEE--eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 64 45799999999999876543 346666764 7899999999986665555554433221 1 1 234589999
Q ss_pred Ee-CCE-EEEEECCC----cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe
Q 002389 779 VV-QGK-IYIGCMDS----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 779 ~s-dg~-llsgs~Dg----~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
|+ ++. +++++.|+ .++.|++..+...... .+....|..+|++++++|++.++++++ .|++|++||..++++
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR--SKQVTNRFKGITSMDVDMKGELAVLAS-NDNSIALVKLKDLSM 303 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE--EEEEESSCSCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEE
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceeccee--eeeecCCCCCeEeEEECCCCCceEEEc-CCCEEEEEECCCCcE
Confidence 97 777 77777776 5788888765433221 133456788999999999999988877 789999999999988
Q ss_pred EEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 853 ISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 853 i~~-l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
+.. +.+|...|++++|+|||++|+|||.|++|+||++..
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 876 579999999999999999999999999999999854
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=3e-24 Score=246.91 Aligned_cols=247 Identities=10% Similarity=0.080 Sum_probs=176.5
Q ss_pred CCCCCCEEEEEEe---CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY---KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs---~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
.+|.++|++|+|+ +++|+||+.||+|++||++++..........+...+.+++|+|++++|++|+.||+|++||++.
T Consensus 161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence 4899999999998 3499999999999999998765433333334455788999999999999999999999999975
Q ss_pred CeEEEEEEeccCCCeEEe--ccCCC-EEEEEecCCeEEEEeCCCc--eee----eccCCCeEEEEEe-CCE-EEEEECCC
Q 002389 723 RKLELIEVIATKEPIRKL--DTYGK-TIFASTQGHRMKVIDSSRT--LKD----IYRSKGIKSMSVV-QGK-IYIGCMDS 791 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~--s~~g~-~L~sgs~Dg~V~IWDl~~~--~~~----l~~~~~V~sla~s-dg~-llsgs~Dg 791 (929)
... ....+|...|.++ ++++. .+++++.|++|++||+... ... ..+...|.+++|+ +|. +++|+.||
T Consensus 241 ~~~--~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 241 KEL--WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp CBC--CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred cee--EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence 432 3345788889864 56665 6888999999999998732 111 1235579999997 655 88999999
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEE-EEe----------cCCCeEEEEECCCCCeEEEe-cCC
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA-SSS----------VEGSNIKEWRRHRKPQISIA-PEK 859 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~-s~S----------~dDgtI~IWDl~~~~~i~~l-~~h 859 (929)
.|++||+.++.......+..........+....+++++...+ +++ .+++.|++||..++..+..+ .+|
T Consensus 319 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~ 398 (435)
T 4e54_B 319 EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE 398 (435)
T ss_dssp CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS
T ss_pred EEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC
Confidence 999999988654332211110011111122334444443332 222 24468999999999887765 478
Q ss_pred CCCeEEE-EEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 860 GTTIQAM-AVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 860 ~~~V~sl-afSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
...|.++ +|+|+|.+|++|+ |++|+||++++++..
T Consensus 399 ~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 399 SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 8888887 6999999999886 889999999988653
No 103
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=1.7e-23 Score=234.83 Aligned_cols=236 Identities=12% Similarity=0.100 Sum_probs=188.6
Q ss_pred eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEccCCeEEEEEE-eccCCCeEEe--cc-CCCEEEEEecCCeE
Q 002389 682 MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTIGVWQMVQRKLELIEV-IATKEPIRKL--DT-YGKTIFASTQGHRM 756 (929)
Q Consensus 682 ~~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtIrIWDl~tg~~~~~~~-~~h~~~V~s~--s~-~g~~L~sgs~Dg~V 756 (929)
.....+.+|.+.|++++|+|++ ++|++|+.||+|++||+.+++...... .+|...|.++ ++ +++.+++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3467788999999999999999 899999999999999999887655443 3688888864 56 56899999999999
Q ss_pred EEEeCCCce-eeecc----CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc
Q 002389 757 KVIDSSRTL-KDIYR----SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW 829 (929)
Q Consensus 757 ~IWDl~~~~-~~l~~----~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~ 829 (929)
++||+.+.. ..+.. ...|.+++|+ ++. +++|+.|+.|++||+..... ..+..|...|.++.++|++
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI-------FKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEE-------EEEECSSSCEEEEEECSSC
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEE-------EEeccCCCcEEEEEECCCC
Confidence 999998532 22222 2459999998 544 88899999999999953221 3346788999999999998
Q ss_pred e-EEEEEecCCCeEEEEECCC----CCeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-
Q 002389 830 L-YSASSSVEGSNIKEWRRHR----KPQISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQKVGRISAGS- 902 (929)
Q Consensus 830 i-~~~s~S~dDgtI~IWDl~~----~~~i~~l~~h~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~- 902 (929)
. ++++.+ .|+.|++||+.+ +.....+ +|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+.+|.
T Consensus 217 ~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 217 DWLMATSS-VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp TTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCEEEEEe-CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 7 666665 789999999887 5566655 7999999999999 99999999999999999999988877776542
Q ss_pred -----------------CeEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 903 -----------------KITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 903 -----------------~Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
.+..+++ ++++ +|+.||.|++||+
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA 337 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec
Confidence 1222332 3444 7789999999995
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=240.56 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=184.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE----------EEEEEeccC------------CCeEE--eccCC
Q 002389 689 EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL----------ELIEVIATK------------EPIRK--LDTYG 744 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~----------~~~~~~~h~------------~~V~s--~s~~g 744 (929)
.|.++|++++|+|+|++|++|+.||.|++||+.+++. ......+|. .+|.+ |.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987652 233444676 66765 56776
Q ss_pred --CEEEEEecCCeEEEEeCCCcee-----------------------------------------ee--ccCCCeEEEEE
Q 002389 745 --KTIFASTQGHRMKVIDSSRTLK-----------------------------------------DI--YRSKGIKSMSV 779 (929)
Q Consensus 745 --~~L~sgs~Dg~V~IWDl~~~~~-----------------------------------------~l--~~~~~V~sla~ 779 (929)
..+++++.|++|++||+..... .+ .+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7899999999999999863111 11 23456999999
Q ss_pred e-CCE-EEEEECCCcEEEEEccCCc-ccee-cccccccccCCCCeEEEEEcCCc-eEEEEEecCCCeEEEEECCCCCe--
Q 002389 780 V-QGK-IYIGCMDSSIQELAVSNNV-EREI-KAPFKSWRLQSKPINSLVVYKDW-LYSASSSVEGSNIKEWRRHRKPQ-- 852 (929)
Q Consensus 780 s-dg~-llsgs~Dg~I~iwDl~tg~-~~~i-~~~~~~~~~~~~~I~sl~~~~d~-i~~~s~S~dDgtI~IWDl~~~~~-- 852 (929)
+ ++. +++| .|+.|++||+.++. .... ......+..|...|.++.++|++ .++++.+ .|+.|++||++++..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEEEECcCCcccc
Confidence 8 666 5566 89999999998432 2111 01112346788999999999997 6777666 788999999998876
Q ss_pred --EEEecCCCC------------CeEEEEEecCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCe-------------
Q 002389 853 --ISIAPEKGT------------TIQAMAVVEDFIYLNYNSSASSLQIWLRGT-QQKVGRISAGSKI------------- 904 (929)
Q Consensus 853 --i~~l~~h~~------------~V~slafSpdg~~LaSgS~DG~I~IWdl~s-g~~i~tl~~h~~V------------- 904 (929)
...+.+|.. .|.+++|+|+|++|++++. |.|++||+.+ ++++..+.+|..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 678888876 8999999999999999998 9999999987 8889999988542
Q ss_pred ---EEEEE--cCCEEEEEECCCcEEEeec
Q 002389 905 ---TSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 905 ---tsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
..++| ++++|++|+.||.|++||+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 22555 5789999999999999985
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=5.5e-23 Score=230.40 Aligned_cols=241 Identities=7% Similarity=0.027 Sum_probs=172.9
Q ss_pred EEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEE-EEEe
Q 002389 673 MWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTI-FAST 751 (929)
Q Consensus 673 IWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L-~sgs 751 (929)
||++.+.. ++....+|.++|++++|+|||++|++|+.|+ +++||+.+++....... +...+..+.++++.+ ++++
T Consensus 3 i~s~~~~~--~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRN--PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECS
T ss_pred cccccccC--CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEEC
Confidence 46666553 3667789999999999999999999998775 78999988765433222 234455677788877 5667
Q ss_pred cCCeEEEEeCCC--ceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCC-ccceecccccccccCCCCeEEEEEcCC
Q 002389 752 QGHRMKVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN-VEREIKAPFKSWRLQSKPINSLVVYKD 828 (929)
Q Consensus 752 ~Dg~V~IWDl~~--~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg-~~~~i~~~~~~~~~~~~~I~sl~~~~d 828 (929)
.|++|++||... ....+.....|.++.++...++++ .|+.|++||+.++ +... .+.. +.....+++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~------~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRIT------DDIR---FGGVCEFSN- 147 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSS------CCEE---EEEEEEEET-
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeE------Eecc---CCceEEEEc-
Confidence 789999999873 444555667899999986665544 4889999999886 2211 1111 333444555
Q ss_pred ceEEEEEecCCCeEEEEECCCCC----------------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCc-EEEEECCC
Q 002389 829 WLYSASSSVEGSNIKEWRRHRKP----------------QISIAPEKGTTIQAMAVVEDFIYLNYNSSASS-LQIWLRGT 891 (929)
Q Consensus 829 ~i~~~s~S~dDgtI~IWDl~~~~----------------~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~-I~IWdl~s 891 (929)
....++.+..+|.|++||+.++. ....+.+|...|++++|+|+|++|++|+.||+ |++||+.+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 33333324578999999998765 26778899999999999999999999999998 99999999
Q ss_pred CcEEEEEe-C-C-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 892 QQKVGRIS-A-G-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 892 g~~i~tl~-~-h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++.+.++. + | ..|++++|+ |++|++|+.||+|++||+
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 99999998 4 6 459999886 779999999999999985
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.7e-24 Score=252.50 Aligned_cols=237 Identities=12% Similarity=0.106 Sum_probs=184.1
Q ss_pred CCCCCEEEEEEeC--------CEEEEEECCCeEEEEECCCCCee---------EEEEeccCCCcEEEEEEcCCCCEEEEE
Q 002389 647 KCSGAVTALIYYK--------GLLCSGFSDGSIKMWDIKKQSAM---------LVWDVKEHRKAVTSFSLFEPGESLLSG 709 (929)
Q Consensus 647 gH~~~Vtsl~fs~--------~~LaSGs~DGtIrIWD~~~~~~~---------~i~~l~gH~~~Vtslafspdg~~LaSg 709 (929)
+|.+.|++++|++ ++||+|+.||+|+|||+.++... +..++.+|..+|++++|+|++ .|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 5789999999983 38999999999999999876421 234678999999999999864 89999
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEEe----ccCC-CEEEEEecCCeEEEEeCCC--ceeeeccC---CCeEEEEE
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRKL----DTYG-KTIFASTQGHRMKVIDSSR--TLKDIYRS---KGIKSMSV 779 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~----s~~g-~~L~sgs~Dg~V~IWDl~~--~~~~l~~~---~~V~sla~ 779 (929)
+.||+|++||+.++........+|..+|.++ .+++ ..+++++.|++|++||++. ....+..+ ..|.+++|
T Consensus 284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 9999999999987754444456899999876 3566 7899999999999999973 22233222 24788999
Q ss_pred e-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--------
Q 002389 780 V-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-------- 849 (929)
Q Consensus 780 s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-------- 849 (929)
+ +++ +++++.|++|++||++++... ..+.+|...|.+++++|++.++++++ .|++|++||...
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~~~------~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lwd~~~~~~~~~~~ 436 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAFAV------HPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIITNAARRLLHGIKN 436 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTTCC------EEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECCBSCSSTTTCC--
T ss_pred CCCcCeEEEeCCCCcEEEEECcccccc------eeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEEechHhhcccccc
Confidence 8 564 888899999999999886542 22356889999999999998887776 788898887421
Q ss_pred ------------------------------------CCeEEEecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECC
Q 002389 850 ------------------------------------KPQISIAPEKGTTIQAMAVVEDF---IYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 850 ------------------------------------~~~i~~l~~h~~~V~slafSpdg---~~LaSgS~DG~I~IWdl~ 890 (929)
+.....+.+|...|.+++|+|++ .++++|+.||.|+||++.
T Consensus 437 ~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 437 SSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ----CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 11123345688899999999995 499999999999999975
Q ss_pred C
Q 002389 891 T 891 (929)
Q Consensus 891 s 891 (929)
-
T Consensus 517 ~ 517 (524)
T 2j04_B 517 L 517 (524)
T ss_dssp C
T ss_pred c
Confidence 3
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=8.2e-23 Score=232.57 Aligned_cols=268 Identities=14% Similarity=0.089 Sum_probs=212.5
Q ss_pred CCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEE-----EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 650 GAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVW-----DVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~-----~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
+.+.+++|+ ++ ++++++.|++|++||..+++. .. .+.+|.+.|.+++|+|++..+++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT--VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE--EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE--eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 456689998 44 677778889999999998864 34 3458999999999999999999999999999999998
Q ss_pred CeEEEEEEeccCCCeE--EeccCCCEEEEEe-cCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CC-EEEEEE-------
Q 002389 723 RKLELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QG-KIYIGC------- 788 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~--s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg-~llsgs------- 788 (929)
++..... ..+...+. +++++++.+++++ .|+.|++||+.. ....+..+..+.+++++ +| .+++++
T Consensus 201 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 201 LAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp CCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred ceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence 8754433 35666665 4678888886555 789999999873 33344445668999997 66 477766
Q ss_pred -CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEE
Q 002389 789 -MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMA 867 (929)
Q Consensus 789 -~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sla 867 (929)
.|+.|++||+.+++..... .+...+..+.++|++...+..+..++.|++||..++.....+. +...+.+++
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred cCCCeEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 4889999999887543321 2244678899999986554444578999999999888777664 667899999
Q ss_pred EecCCCEEEEEeC---------------CCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEEC-CCcEEEeec
Q 002389 868 VVEDFIYLNYNSS---------------ASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTE-TGLIKGWIP 928 (929)
Q Consensus 868 fSpdg~~LaSgS~---------------DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~-DG~I~IWdi 928 (929)
|+|+|+++++++. ||.|++||..+++.+..+..+..+.+++|+ |++|++++. ||.|++|++
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 9999999988876 579999999999999999988789998875 778888775 999999985
No 108
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.5e-24 Score=242.19 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=182.8
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE-EEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL-ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~-~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
++.|.++|++++|+|+|++|++|+.||+|++||+.++.. ......+|..+|.+ |+++++++++++.|++|++||+..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 345778999999999999999999999999999998742 23344578888886 678899999999999999999874
Q ss_pred c-----eeeec-cCCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccceeccccccccc-CCCCeEEEEEcCCceEEEE
Q 002389 764 T-----LKDIY-RSKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSAS 834 (929)
Q Consensus 764 ~-----~~~l~-~~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~-~~~~I~sl~~~~d~i~~~s 834 (929)
. ...+. +...|.+++|+ ++. +++|+.|+.|++||+.++..... .+.+.. |...+.++.++|++.++++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV---SKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC---CEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee---eeEeecccCCCeEEEEEcCCCCEEEE
Confidence 2 22232 35679999997 555 88999999999999988653111 123344 7899999999999988887
Q ss_pred EecCCCeEEEEECC------------------CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE--
Q 002389 835 SSVEGSNIKEWRRH------------------RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK-- 894 (929)
Q Consensus 835 ~S~dDgtI~IWDl~------------------~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~-- 894 (929)
.+ .|++|++||+. .+.....+ +|...|++++|+|++++|++|+.||.|++||+.+++.
T Consensus 164 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 164 GC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred Ee-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 77 67899999985 24455566 8999999999999999999999999999999999987
Q ss_pred --EEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEee
Q 002389 895 --VGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 895 --i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWd 927 (929)
+..+.+|. .|++++|+ +++|++|+.|+.+ +|+
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 78888885 49998875 7788888777765 664
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=1.1e-23 Score=242.11 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=186.9
Q ss_pred CCCCCEEEEEEeC---CEEEEEECCCeEEEEECCC--------CCeeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 002389 647 KCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKK--------QSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSGSADKT 714 (929)
Q Consensus 647 gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~--------~~~~~i~~l~gH~~~Vtslafspdg~-~LaSgs~Dgt 714 (929)
+|.+.|++++|++ .++++|+.||.|++||+.+ +.......+.+|...|++++|+|++. +|++|+.||+
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 6899999999993 2799999999999999976 22345678889999999999999998 9999999999
Q ss_pred EEEEEccCCeEE------EEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe--CC-EEE
Q 002389 715 IGVWQMVQRKLE------LIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QG-KIY 785 (929)
Q Consensus 715 IrIWDl~tg~~~------~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s--dg-~ll 785 (929)
|++||+.++... .....+| ...|.+++|+ ++ .++
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h-------------------------------------~~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGH-------------------------------------TAVVEDVAWHLLHESLFG 248 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCC-------------------------------------SSCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCC-------------------------------------CCCEeeeEEeCCCCCEEE
Confidence 999999874210 0011122 2335566664 22 355
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceE-EEEEecCCCeEEEEECCC-CCeEEEecCCCCCe
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLY-SASSSVEGSNIKEWRRHR-KPQISIAPEKGTTI 863 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~-~~s~S~dDgtI~IWDl~~-~~~i~~l~~h~~~V 863 (929)
+++.||.|++||+.++... .+...+..|...++++.++|++.+ .++++ .||.|++||++. +..+..+.+|...|
T Consensus 249 s~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h~~~v 324 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTS---KPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFESHKDEI 324 (430)
T ss_dssp EEETTSEEEEEETTCSCSS---SCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEECCSSCE
T ss_pred EEeCCCeEEEEECCCCCCC---cceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecCCCCE
Confidence 6677777777777664211 111233567889999999998763 44444 789999999987 56678888999999
Q ss_pred EEEEEecCCC-EEEEEeCCCcEEEEECCC--------------CcEEEEEeCCC-CeEEEEEc--CC-EEEEEECCCcEE
Q 002389 864 QAMAVVEDFI-YLNYNSSASSLQIWLRGT--------------QQKVGRISAGS-KITSLLTA--ND-IVLCGTETGLIK 924 (929)
Q Consensus 864 ~slafSpdg~-~LaSgS~DG~I~IWdl~s--------------g~~i~tl~~h~-~Vtsvs~d--g~-~LaSgs~DG~I~ 924 (929)
.+++|+|+++ ++++|+.||.|+|||+.. .+.+..+.+|. .|++++|+ +. ++++++.||.|+
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 9999999985 699999999999999876 36778888885 49999987 44 899999999999
Q ss_pred Eeec
Q 002389 925 GWIP 928 (929)
Q Consensus 925 IWdi 928 (929)
||++
T Consensus 405 iw~~ 408 (430)
T 2xyi_A 405 VWQM 408 (430)
T ss_dssp EEEE
T ss_pred EeEc
Confidence 9985
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=1.1e-22 Score=222.98 Aligned_cols=234 Identities=13% Similarity=0.151 Sum_probs=191.6
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe--EEEEEEeccCCCeEE--eccCCC-EEEEEecCCeEEEE
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK--LELIEVIATKEPIRK--LDTYGK-TIFASTQGHRMKVI 759 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~--~~~~~~~~h~~~V~s--~s~~g~-~L~sgs~Dg~V~IW 759 (929)
....+|.+.|++++|+|++++|++|+.||.|++||+.++. ........|...|.+ |+++++ .+++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3346899999999999999999999999999999998876 122344478888886 568899 99999999999999
Q ss_pred eC-CC-ceeeec---cCCCeEEEEEe-CCEEEEEECCCcEEEEEccC---------CccceecccccccccCCCCeEEEE
Q 002389 760 DS-SR-TLKDIY---RSKGIKSMSVV-QGKIYIGCMDSSIQELAVSN---------NVEREIKAPFKSWRLQSKPINSLV 824 (929)
Q Consensus 760 Dl-~~-~~~~l~---~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~t---------g~~~~i~~~~~~~~~~~~~I~sl~ 824 (929)
|+ .. ....+. +...|.+++|+ ++.+++++.|+.|++||+.+ ++.. ..+. +...+.++.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------NNTK-VKNKIFTMD 157 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS------SSSS-SCCCEEEEE
T ss_pred EeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCee------eEEe-eCCceEEEE
Confidence 99 63 334444 34569999998 56699999999999999986 3321 2223 678899999
Q ss_pred EcCCceEEEEEecCCCeEEEEECCC-CC--eEEEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC------cE
Q 002389 825 VYKDWLYSASSSVEGSNIKEWRRHR-KP--QISIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQ------QK 894 (929)
Q Consensus 825 ~~~d~i~~~s~S~dDgtI~IWDl~~-~~--~i~~l~~h~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg------~~ 894 (929)
++++. +++.+ .|+.|++||+.+ +. .......|...|.+++|+| +++++++|+.||.|++|++... +.
T Consensus 158 ~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 158 TNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp ECSSE--EEEEE-STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred ecCCc--EEEEe-CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 99988 33333 688999999987 43 4445667888999999999 9999999999999999999887 77
Q ss_pred EEEEeCCC----------CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 895 VGRISAGS----------KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 895 i~tl~~h~----------~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
+..+..|. .|++++|+ +++|++|+.||.|++||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 88888873 69998885 779999999999999985
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=3.2e-22 Score=224.49 Aligned_cols=255 Identities=9% Similarity=0.101 Sum_probs=203.1
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCeEEEEEEeccCCCeE-
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIATKEPIR- 738 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~L-aSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~- 738 (929)
.+++++.|+.|++||+.+++. +..+..|. .+.+++|+|+|+++ ++++.|++|++||+.+++........ ..+.
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~ 78 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKV--TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQG 78 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEE
T ss_pred EEEEcCCCCEEEEEECCCCeE--EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCccc
Confidence 578899999999999998753 66776665 58999999999986 67879999999999998865443332 3555
Q ss_pred -EeccCCCEEEEEe-cCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-E-EEEECCCcEEEEEccCCccceeccccc
Q 002389 739 -KLDTYGKTIFAST-QGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-I-YIGCMDSSIQELAVSNNVEREIKAPFK 811 (929)
Q Consensus 739 -s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-l-lsgs~Dg~I~iwDl~tg~~~~i~~~~~ 811 (929)
+++++++++++++ .++.|++||+.. ....+..+..+.+++|+ +|+ + ++++.++.|++||+.+++.....
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---- 154 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---- 154 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE----
Confidence 4678899886555 669999999983 33444556779999997 665 5 56778999999999887654321
Q ss_pred ccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEE
Q 002389 812 SWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNS---SASSLQIWL 888 (929)
Q Consensus 812 ~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS---~DG~I~IWd 888 (929)
.. ...+..+.+++++..++..+..++.|++||..++.....+. +...+.+++|+|+|+++++++ .++.|++||
T Consensus 155 --~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 155 --SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp --EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred --ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 22 35568999999987765445578999999999988776665 456789999999999999888 689999999
Q ss_pred CCCCcEEEEEeCCCCeEEEEEc--CCEE-EEEECCCcEEEeec
Q 002389 889 RGTQQKVGRISAGSKITSLLTA--NDIV-LCGTETGLIKGWIP 928 (929)
Q Consensus 889 l~sg~~i~tl~~h~~Vtsvs~d--g~~L-aSgs~DG~I~IWdi 928 (929)
+.+++.+..+..|..+.+++|+ ++.+ ++++.|+.|++||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 231 TGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 9999999999988888888876 6666 67788999999985
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.9e-23 Score=230.52 Aligned_cols=251 Identities=8% Similarity=-0.003 Sum_probs=187.2
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc---------CCeEEEEE
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV---------QRKLELIE 729 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~---------tg~~~~~~ 729 (929)
+.++++|+.||+|++||+.+++. +..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.....
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~--~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKT--ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSC--EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcE--EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 45899999999999999998864 44554 567888899988 9999999999999765 44434444
Q ss_pred EeccCCCeEEe--cc--CCCEEEEEecCCeEEEEeCCCcee--eecc--CCCeEEEEEe-CCE-EEEEECCCcEEEEEcc
Q 002389 730 VIATKEPIRKL--DT--YGKTIFASTQGHRMKVIDSSRTLK--DIYR--SKGIKSMSVV-QGK-IYIGCMDSSIQELAVS 799 (929)
Q Consensus 730 ~~~h~~~V~s~--s~--~g~~L~sgs~Dg~V~IWDl~~~~~--~l~~--~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~ 799 (929)
..+|..+|.++ ++ +++++++++.||+|++||+..... .... ...+.+++|+ +|. +++|+.||.|++||+.
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 45666788864 57 788999999999999999984322 2212 3469999998 666 6778999999999999
Q ss_pred CCccceeccccccccc-CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC---CCCCeE--EEEEecCCC
Q 002389 800 NNVEREIKAPFKSWRL-QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE---KGTTIQ--AMAVVEDFI 873 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~-~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~---h~~~V~--slafSpdg~ 873 (929)
++.... ..+.. |..+|.++.++|++.++++.+ +| +|++||++++.....+.. |...+. +++|+|+|+
T Consensus 201 ~~~~~~-----~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 201 SPDQAS-----SRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp CTTSCC-----EECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred CCCCCc-----cEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 876431 12344 789999999999999988887 54 999999988776544433 444444 699999999
Q ss_pred EEEEEeC-CCcEEEEECCCCcEEEEEeCCCCeEEEEEc-----CCEEEEEECCCcEEEe
Q 002389 874 YLNYNSS-ASSLQIWLRGTQQKVGRISAGSKITSLLTA-----NDIVLCGTETGLIKGW 926 (929)
Q Consensus 874 ~LaSgS~-DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d-----g~~LaSgs~DG~I~IW 926 (929)
+|++++. |+.|++|++.++...... .++..+.|. .+.+++++.||.+.++
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence 9999998 999999998766543333 234444443 4577778888877765
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=4e-23 Score=234.10 Aligned_cols=244 Identities=15% Similarity=0.126 Sum_probs=192.3
Q ss_pred cCCCCCCEEEEEEeC---CEEEEEECCCeEEEEECCCCCe-----eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeE
Q 002389 645 SHKCSGAVTALIYYK---GLLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFEPG-ESLLSGSADKTI 715 (929)
Q Consensus 645 ~~gH~~~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~-----~~i~~l~gH~~~Vtslafspdg-~~LaSgs~DgtI 715 (929)
..+|.+.|++++|++ ++|++|+.||+|+|||+.++.. ..+..+.+|...|++++|+|++ ..|++|+.||+|
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 348999999999983 4999999999999999998632 2467788999999999999998 689999999999
Q ss_pred EEEEccCCeEEEEEE-eccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC--ceeee-ccC--CCeEEEEEe-CCEEE-
Q 002389 716 GVWQMVQRKLELIEV-IATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR--TLKDI-YRS--KGIKSMSVV-QGKIY- 785 (929)
Q Consensus 716 rIWDl~tg~~~~~~~-~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l-~~~--~~V~sla~s-dg~ll- 785 (929)
++||+.+++...... ..|...|.+ |+++++.+++++.||.|++||++. ....+ ..+ ..+.++.|+ ++.++
T Consensus 157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEE
Confidence 999999987654433 568888886 568899999999999999999884 33333 222 237889997 78744
Q ss_pred EE---ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe-EEEecC--C
Q 002389 786 IG---CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ-ISIAPE--K 859 (929)
Q Consensus 786 sg---s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~-i~~l~~--h 859 (929)
+| +.|+.|++||+.++..... .....+...+..+.+++++.+++..+..|+.|++||+.++.. ...+.. |
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~ 312 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLS----LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS 312 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSE----EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC
T ss_pred EeccCCCCceEEEEcCccccCCce----EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc
Confidence 55 5899999999988653111 011234677999999999888765555789999999988763 444433 5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcE
Q 002389 860 GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 860 ~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~ 894 (929)
...|.+++|+|++.++++ .|+.+++|++.++..
T Consensus 313 ~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 313 KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 589999999999999876 477999999887654
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-23 Score=256.93 Aligned_cols=240 Identities=13% Similarity=0.137 Sum_probs=188.7
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE-EEEeccCCCeEEe--ccC--CCEEEEEecCCeEEE
Q 002389 684 VWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL-IEVIATKEPIRKL--DTY--GKTIFASTQGHRMKV 758 (929)
Q Consensus 684 i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~-~~~~~h~~~V~s~--s~~--g~~L~sgs~Dg~V~I 758 (929)
+..+.+|.++|++++|+|+|++|++|+.||+|++||+.++.... ....+|..+|.++ +++ ++.+++++.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998554333 3445788999875 455 889999999999999
Q ss_pred EeCCCc----eeeec-cCCCeEEEEEe-C--CE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcC--
Q 002389 759 IDSSRT----LKDIY-RSKGIKSMSVV-Q--GK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-- 827 (929)
Q Consensus 759 WDl~~~----~~~l~-~~~~V~sla~s-d--g~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-- 827 (929)
||+... ...+. +...|.+++|+ + +. +++|+.||.|++||+.++..... .....|...+.++.++|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~----~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----IIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC----EEEECCSSCEEEEEECCCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce----eEeecCCCceEEEEecCcc
Confidence 998743 23333 35679999997 4 54 88999999999999988643222 23456788999999998
Q ss_pred -----------CceEEEEEecCCCeEEEEECCCC----CeEEEecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEEC
Q 002389 828 -----------DWLYSASSSVEGSNIKEWRRHRK----PQISIAPEKGTTIQAMAVVED---FIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 828 -----------d~i~~~s~S~dDgtI~IWDl~~~----~~i~~l~~h~~~V~slafSpd---g~~LaSgS~DG~I~IWdl 889 (929)
++.++++++ .||.|++||.+++ .....+.+|...|++++|+|+ +.++++|+.||.|++||+
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp ---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred cccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 366666666 7899999998766 456678899999999999999 999999999999999998
Q ss_pred CCCcE-----EEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 890 GTQQK-----VGRISAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 890 ~sg~~-----i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.+++. +.....| ..|++++|+ |+++++|+.||.|++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 88642 2222234 448888875 779999999999999985
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-23 Score=243.29 Aligned_cols=258 Identities=12% Similarity=0.072 Sum_probs=198.7
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.-...|.+|+|+ || ++|||+.|++|+ |...++ .+.+|...|.+++|+|+| .++++.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc-----eecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 346789999999 55 899999999999 765553 347999999999999999 57776666654322
Q ss_pred EEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeeccCC-----CeEEEEEe-CCE-EEEEECCCcEEE
Q 002389 725 LELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSK-----GIKSMSVV-QGK-IYIGCMDSSIQE 795 (929)
Q Consensus 725 ~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~-----~V~sla~s-dg~-llsgs~Dg~I~i 795 (929)
.....+...|. +|+|+|..+++++.||.|++||..+....+.++. .+.+++|+ +|+ +++|+.||+|++
T Consensus 79 ---~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 79 ---LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp ---SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred ---EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 22224566676 4789999999999999999999776555555222 49999998 777 888999999999
Q ss_pred EEccCCccceec-cccccc----ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe---EEEe-cCCCCCeEEE
Q 002389 796 LAVSNNVEREIK-APFKSW----RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ---ISIA-PEKGTTIQAM 866 (929)
Q Consensus 796 wDl~tg~~~~i~-~~~~~~----~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~---i~~l-~~h~~~V~sl 866 (929)
||+.++...... .....+ .+|...|.+++++|++ .++++ .|+++++||..++.. .+++ .+|...|.++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 999986431100 000222 4567899999999999 44444 689999999988773 3455 4788999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEE--c--CCEEEEEECCCcEEEeec
Q 002389 867 AVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLT--A--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 867 afSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~--d--g~~LaSgs~DG~I~IWdi 928 (929)
+|+ |.+|++++ +|+|++||..+++......+|. .|+++++ + +..+++++.||+ ++|..
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 999 68999997 7999999999888744443674 4888887 5 558999999999 99974
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=2e-22 Score=221.89 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=187.4
Q ss_pred CCCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEE--cCCCCEEEEEeCCCeEEEEEcc
Q 002389 646 HKCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSL--FEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 646 ~gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslaf--spdg~~LaSgs~DgtIrIWDl~ 721 (929)
.+|.+.|++++|+ +.+|++|+.||.|++||+.+++. ..+.+|..+|++++| +|++.+|++|+.||+|++||+.
T Consensus 83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA---IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc---eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 3799999999999 44999999999999999998753 345689999999999 8999999999999999999999
Q ss_pred CCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeec-----cCCCeEEEEEe--CC----EEEEEECC
Q 002389 722 QRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIY-----RSKGIKSMSVV--QG----KIYIGCMD 790 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~-----~~~~V~sla~s--dg----~llsgs~D 790 (929)
+++..... .....+.++.+.+..+++++.++.+.+|++........ ....+.++.+. .. .+++++.|
T Consensus 160 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 160 SSNPMMVL--QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp CSSCSEEE--ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred CCcEEEEE--ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 88754332 23446777777788999999999999999985433222 13445566553 21 18899999
Q ss_pred CcEEEEEccCCccceecccccccccCCC------------CeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSK------------PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE 858 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~------------~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~ 858 (929)
|.|++||+........ ...+..|.. ++.++.++|++.++++.+ .||.|++||+.++..+..+.+
T Consensus 238 g~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKD---NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp SEEEEEESSCSCHHHH---SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEEECCC
T ss_pred CcEEEEecCCCCcccc---ceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCcEEEEecC
Confidence 9999999987643110 122233333 799999999998888776 788999999999999999999
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
|...|++++|+|+|++|++|+.|+..+.|+
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCCCceEEEECCCCCeEEEEeccccccccc
Confidence 999999999999999999999998665554
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=4.6e-23 Score=234.33 Aligned_cols=261 Identities=8% Similarity=0.004 Sum_probs=152.9
Q ss_pred CCCCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCee---EEEEeccCCCcEEEEEEcC--------CCCEEEEEeCCC
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSAM---LVWDVKEHRKAVTSFSLFE--------PGESLLSGSADK 713 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~~---~i~~l~gH~~~Vtslafsp--------dg~~LaSgs~Dg 713 (929)
.|.+.+....++ +.++++|+.|++|+|||..++... .+..+.+|.+.|++++|+| ||++|+|||.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 344555544554 337999999999999999987543 2334689999999999998 888999999999
Q ss_pred eEEEEEccCCeEEEEEEeccCCCeEE--eccCCC-EEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECC
Q 002389 714 TIGVWQMVQRKLELIEVIATKEPIRK--LDTYGK-TIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMD 790 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~-~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~D 790 (929)
+|+|||+.++... .....|..++.+ |+|++. ++++++.|++|++||+............- .......++....
T Consensus 167 tv~~Wd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~---~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 167 TLIIWRLTDEGPI-LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE---LVKNPWLLTLNTL 242 (393)
T ss_dssp EEEEEEEETTEEE-EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------------CSCCCSEEEESG
T ss_pred eEEEEECCCCcee-eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC---CcccceEEecccc
Confidence 9999999887643 344567778875 566664 79999999999999987321111000000 0000000000000
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEE---
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAM--- 866 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~-~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~sl--- 866 (929)
..... ....++...+.++.+. +++..+++.+ .|+++++||+..+.....+..|...+..+
T Consensus 243 ~~~~~---------------~~~~~~~~~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 243 PLVNT---------------CHSSGIASSLANVRWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp GGC---------------------CCSSSCSEEEEETTTTCEEEEEC-TTSEEEEEEC-------------------CCS
T ss_pred cceee---------------eecccccccceeeeeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 00000 0012234445555554 4555555444 55666666665554444444443333322
Q ss_pred ---------------EEec--CCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCCcEEEe
Q 002389 867 ---------------AVVE--DFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETGLIKGW 926 (929)
Q Consensus 867 ---------------afSp--dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IW 926 (929)
.|+| ++.++++|+.||+|++||..+++.+..+..| .+|++++|+ |++|+++++|| +.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lv 385 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLT 385 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEE
Confidence 3333 4557788899999999999999988777766 559999986 88999999887 6665
Q ss_pred ec
Q 002389 927 IP 928 (929)
Q Consensus 927 di 928 (929)
+.
T Consensus 386 rL 387 (393)
T 4gq1_A 386 RL 387 (393)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=2e-20 Score=209.78 Aligned_cols=266 Identities=11% Similarity=0.082 Sum_probs=201.2
Q ss_pred CCEEEEEEe-CC-EE-EEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeE
Q 002389 650 GAVTALIYY-KG-LL-CSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~L-aSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~ 725 (929)
..+.+++|+ ++ ++ ++++.|++|++||..+++. +..+..|. .|.+++|+|+|++|+ +++.|+.|++||+.+++.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence 458999999 44 55 6777999999999998754 56665554 899999999999875 555779999999999876
Q ss_pred EEEEEeccCCCeE--EeccCCCEE-EEEecCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-E-EEEECCCcEEEEE
Q 002389 726 ELIEVIATKEPIR--KLDTYGKTI-FASTQGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-I-YIGCMDSSIQELA 797 (929)
Q Consensus 726 ~~~~~~~h~~~V~--s~s~~g~~L-~sgs~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-l-lsgs~Dg~I~iwD 797 (929)
..... +...+. +++++++.+ ++++.++.|++||+.. ....+..+..+.+++|+ ++. + ++++.++.|++||
T Consensus 109 ~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 109 AGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp EEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 44333 333444 477888877 6777899999999873 33444556778999997 664 5 4677889999999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec--CCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYL 875 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~--dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~L 875 (929)
+.++...... .+...+..+.+++++.+++..+. .++.|++||..++..+..+..|. .+.+++|+|+|+++
T Consensus 187 ~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 187 TVTNSVIDTV-------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp TTTTEEEEEE-------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEE
T ss_pred CCCCeEEEEE-------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEE
Confidence 9887543321 13457888999999877666554 57899999999998888777765 57899999999988
Q ss_pred -EEEeCCCcEEEEECCCCcEEEEEeCCCC-------eE-----------EEEEcC----------CEEEEEECCCcEEEe
Q 002389 876 -NYNSSASSLQIWLRGTQQKVGRISAGSK-------IT-----------SLLTAN----------DIVLCGTETGLIKGW 926 (929)
Q Consensus 876 -aSgS~DG~I~IWdl~sg~~i~tl~~h~~-------Vt-----------svs~dg----------~~LaSgs~DG~I~IW 926 (929)
++++.|+.|++||+.+++.+..+..|.. +. .+.++. -.+...+.|..+++|
T Consensus 259 ~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W 338 (391)
T 1l0q_A 259 YVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKW 338 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEE
T ss_pred EEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEE
Confidence 6778899999999999999988876632 11 122221 246666778999999
Q ss_pred ec
Q 002389 927 IP 928 (929)
Q Consensus 927 di 928 (929)
+.
T Consensus 339 ~~ 340 (391)
T 1l0q_A 339 DF 340 (391)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.2e-20 Score=215.37 Aligned_cols=233 Identities=11% Similarity=0.035 Sum_probs=185.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe---EEEEEEe------------------------------------
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK---LELIEVI------------------------------------ 731 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~---~~~~~~~------------------------------------ 731 (929)
..++++++|+|+|++|+++ .++.|++||+.+|+ .......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966655 58899999999887 3322211
Q ss_pred -----------------ccCCCeEE--eccCCCEE-EEEecCCeEEEEeCC--C--ceeeec---cCCCeEEEEEe-CCE
Q 002389 732 -----------------ATKEPIRK--LDTYGKTI-FASTQGHRMKVIDSS--R--TLKDIY---RSKGIKSMSVV-QGK 783 (929)
Q Consensus 732 -----------------~h~~~V~s--~s~~g~~L-~sgs~Dg~V~IWDl~--~--~~~~l~---~~~~V~sla~s-dg~ 783 (929)
+|...|.+ |+++++++ ++++.||.|++||+. . ....+. ....|.+++|+ ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 12225665 67899986 888899999999987 2 333432 34679999998 554
Q ss_pred -EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC---ceEEEEEecCCCeEEEEECCCCCeEEE-ecC
Q 002389 784 -IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD---WLYSASSSVEGSNIKEWRRHRKPQISI-APE 858 (929)
Q Consensus 784 -llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d---~i~~~s~S~dDgtI~IWDl~~~~~i~~-l~~ 858 (929)
+++|+.+|.+++|++.++..... +...+.+|...|.++.++|+ +.++++.+ .|++|++||+.++..+.. ..+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEEECCCCceeeeeecC
Confidence 88899999999999987654320 11345678899999999999 88888777 778999999998887766 668
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--------------------------CCeEEEEEc--
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--------------------------SKITSLLTA-- 910 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--------------------------~~Vtsvs~d-- 910 (929)
|...|++++|+ ++++|++|+.||.|++||+.+++.+..+..+ ..|.+++|.
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 9999999999999999999999999888732 237788775
Q ss_pred CCEEEEEE-CCCcEEEeec
Q 002389 911 NDIVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 911 g~~LaSgs-~DG~I~IWdi 928 (929)
++++++++ .|+.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 77999998 8999999986
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.5e-21 Score=212.15 Aligned_cols=220 Identities=10% Similarity=0.020 Sum_probs=168.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCce-----------e
Q 002389 698 SLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL-----------K 766 (929)
Q Consensus 698 afspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~-----------~ 766 (929)
.+.+++..+++|+.||+|++||+.+++...... ...|.++..+.. +++++.|++|++|+..+.. .
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 345678889999999999999999987654433 234555444444 9999999999999876432 1
Q ss_pred eec--cCCCeEEEEEe---CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 767 DIY--RSKGIKSMSVV---QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 767 ~l~--~~~~V~sla~s---dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
... +...|.+++++ ++. +++|+.||.|++||+.++...... ...+...+.++.++|++.++++++ .|+
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~~i~~~~~~pdg~~lasg~-~dg 192 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH-----SAKSDVEYSSGVLHKDSLLLALYS-PDG 192 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE-----CCCSSCCCCEEEECTTSCEEEEEC-TTS
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE-----ecCCCCceEEEEECCCCCEEEEEc-CCC
Confidence 222 23569999986 344 788999999999999987653321 123455799999999999888776 789
Q ss_pred eEEEEECCCCCeE-EEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---C-CCe--EEEEEc--
Q 002389 841 NIKEWRRHRKPQI-SIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA---G-SKI--TSLLTA-- 910 (929)
Q Consensus 841 tI~IWDl~~~~~i-~~l~~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~---h-~~V--tsvs~d-- 910 (929)
.|++||++++... ..+.+ |...|++++|+|+|.+|++|+ |+.|++||+.+++.+..+.. | ..+ .+++|+
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 9999999998877 77777 999999999999999999999 55999999999877655443 2 123 346665
Q ss_pred CCEEEEEEC-CCcEEEeec
Q 002389 911 NDIVLCGTE-TGLIKGWIP 928 (929)
Q Consensus 911 g~~LaSgs~-DG~I~IWdi 928 (929)
|++|++|+. |+.|++|+.
T Consensus 272 g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp SSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEecCCCCcEEEEEE
Confidence 789999998 999999974
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1.7e-19 Score=199.81 Aligned_cols=259 Identities=10% Similarity=0.053 Sum_probs=169.1
Q ss_pred CEEEEEEe-CC----EEEEEECCCeEEEEECCCC-CeeEEEEeccCCCcEEEEEEcCCCCEEE----------------E
Q 002389 651 AVTALIYY-KG----LLCSGFSDGSIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLFEPGESLL----------------S 708 (929)
Q Consensus 651 ~Vtsl~fs-~~----~LaSGs~DGtIrIWD~~~~-~~~~i~~l~gH~~~Vtslafspdg~~La----------------S 708 (929)
.|.++-|- .+ -+++++ ..+|++|+..++ +.+.++++.+|..+|..+.|.||-..|+ .
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 45566665 22 355555 578999999886 2356889999998887777777443322 2
Q ss_pred EeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe--cCCeEEEEeCCC---ceeeecc-CCCeEEEEEe--
Q 002389 709 GSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST--QGHRMKVIDSSR---TLKDIYR-SKGIKSMSVV-- 780 (929)
Q Consensus 709 gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs--~Dg~V~IWDl~~---~~~~l~~-~~~V~sla~s-- 780 (929)
+.+|+.+.-|.+.. ++...+..+ ++++.+.+++ .|+.|++|++.. ....... ...+..++|+
T Consensus 120 spd~~~~~~~l~s~---------g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 120 SSDDESEKQVLLKS---------GNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp ------CCEEEEEE---------EEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred CCCccccccEEEeC---------CCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 22222222222211 122223333 2344444433 588999999852 2222222 3345555554
Q ss_pred --C-CEEEEEECCCcEEEEEccCCccceecccccccccC---CCCeEEEEEcCCceEEEEEe-----------cCCCeEE
Q 002389 781 --Q-GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ---SKPINSLVVYKDWLYSASSS-----------VEGSNIK 843 (929)
Q Consensus 781 --d-g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~---~~~I~sl~~~~d~i~~~s~S-----------~dDgtI~ 843 (929)
+ ..+++|+.|++|++||+.+|+..... .++ ...+..++++|++.++++++ ..|++|+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL------~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKM------HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEE------ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEE------cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 2 34888999999999999998754332 222 23677778999988765432 3678999
Q ss_pred EEECCCCCeEEEe-----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--eEEEEE--cCCEE
Q 002389 844 EWRRHRKPQISIA-----PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK--ITSLLT--ANDIV 914 (929)
Q Consensus 844 IWDl~~~~~i~~l-----~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~--Vtsvs~--dg~~L 914 (929)
+||..++..+..+ .+|...+.+..+ ++.++++|+.||+|+|||+.+++.+.++.+|.. +.+++| +|++|
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 9999999877654 477666554444 488999999999999999999999999998843 434555 57899
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
++|+.||+|+|||.
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999985
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.7e-22 Score=230.78 Aligned_cols=222 Identities=7% Similarity=0.040 Sum_probs=171.1
Q ss_pred CCCCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 646 HKCSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+|.+.|++++|+ ++ .++++.+|+.+... +..+ .|...|++++|+|+|+.|++++.||+|++||..+
T Consensus 49 ~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~---~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-- 116 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE------FENKLDFELAQQNG---LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-- 116 (588)
T ss_dssp SSBGGGTEEEEEECCC------CCCTTTTSCCCSSC---SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--
T ss_pred cCCCccEEEEEECCCC------CcceEEEEeCCCce---Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--
Confidence 4899999999998 44 56666666554322 2232 5688999999999999999999999999999543
Q ss_pred EEEEEEeccCC-----CeEE--eccCCCEEEEEecCCeEEEEeCCCc---------eeeecc-----CCCeEEEEEe-CC
Q 002389 725 LELIEVIATKE-----PIRK--LDTYGKTIFASTQGHRMKVIDSSRT---------LKDIYR-----SKGIKSMSVV-QG 782 (929)
Q Consensus 725 ~~~~~~~~h~~-----~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~---------~~~l~~-----~~~V~sla~s-dg 782 (929)
+... .. |.. .+.+ |+|+|+++++|+.||+|++||+... ..++.. ...|.+++|+ +|
T Consensus 117 ~l~~-l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg 194 (588)
T 2j04_A 117 MLTN-LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV 194 (588)
T ss_dssp EEEE-CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred eeee-cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence 2222 22 443 3664 7899999999999999999998843 234321 2469999998 77
Q ss_pred EEEEEECCCcEEEEEccCCccceeccccccc-ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC
Q 002389 783 KIYIGCMDSSIQELAVSNNVEREIKAPFKSW-RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 861 (929)
Q Consensus 783 ~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~-~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~ 861 (929)
+++++.|++|++||+.++....+ .+.+ .+|...|.+++++ + ..+++.+ +++|++||..++.......+|..
T Consensus 195 -Laass~D~tVrlWd~~~~~~~~~---~~tL~~~h~~~V~svaFs-g-~~LASa~--~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 195 -LVAALSNNSVFSMTVSASSHQPV---SRMIQNASRRKITDLKIV-D-YKVVLTC--PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp -EEEEETTCCEEEECCCSSSSCCC---EEEEECCCSSCCCCEEEE-T-TEEEEEC--SSEEEEEETTTTEEEEEECSCCS
T ss_pred -EEEEeCCCeEEEEECCCCccccc---eeeecccccCcEEEEEEE-C-CEEEEEe--CCeEEEEECCCCeEEEEEcCCCc
Confidence 99999999999999988663210 0122 3567889999999 4 4555554 58999999999887555558999
Q ss_pred CeEEEEE--ecCCCEEEEEeCCCcEEEEECC
Q 002389 862 TIQAMAV--VEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 862 ~V~slaf--Spdg~~LaSgS~DG~I~IWdl~ 890 (929)
.|..++| +||+..++++++||+ ++|..+
T Consensus 267 ~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999999 999999999999999 999874
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=4.8e-20 Score=204.15 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=134.0
Q ss_pred CCeEEEEECCC-CCeeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccC--CCeE--E
Q 002389 668 DGSIKMWDIKK-QSAMLVWDVKEHRKAVTSFSLFE---PGESLLSGSADKTIGVWQMVQRKLELIEVIATK--EPIR--K 739 (929)
Q Consensus 668 DGtIrIWD~~~-~~~~~i~~l~gH~~~Vtslafsp---dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~--~~V~--s 739 (929)
|+.|++|++.. ++ .+..+.+|...++.++|+| ++..|+||+.|++|+|||+.+|++......++. ..+. +
T Consensus 156 d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 156 DQQVEVMTFAEDGG--GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp TCEEEEEEECTTSC--EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred CCcEEEEEECCCCc--eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 89999999854 43 4667778998999999998 778999999999999999999987655443221 2343 5
Q ss_pred eccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCC
Q 002389 740 LDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP 819 (929)
Q Consensus 740 ~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~ 819 (929)
|+|+|..+++++.+.. +|+ +++|+.|+++++||..++....+... ....+|...
T Consensus 234 fSpdG~~lvs~s~~~~--~w~-----------------------laSGs~D~tIklWd~~tgk~l~v~~~-~~p~Gh~~~ 287 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCA--KES-----------------------ESLRSPVFQLIVINPKTTLSVGVMLY-CLPPGQAGR 287 (356)
T ss_dssp EEETTEEEEEEC-------------------------------------CCEEEEEEETTTTEEEEEEEE-CCCTTCCCC
T ss_pred ECCCCCEEEEeccCCC--cce-----------------------eeccCCCcEEEEEECCCCEEEEEEEe-eccCCCcce
Confidence 7888888877765432 132 46788999999999988765432100 001233333
Q ss_pred eEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeE-EEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 820 INSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQ-AMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 820 I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~-slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
+ +..+.++.++++++ .|++|++||+.+++.+.++.+|...+. .++|+|||++|++|+.|++|+|||.
T Consensus 288 ~--lsg~~sg~~lASgS-~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 288 F--LEGDVKDHCAAAIL-TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--EEEEEETTEEEEEE-TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred e--EccccCCCEEEEEc-CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3 23333355677766 678999999999999999999987655 5899999999999999999999985
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=3.5e-19 Score=202.59 Aligned_cols=234 Identities=14% Similarity=0.070 Sum_probs=183.3
Q ss_pred CCCCCCEEEEEEe-C-CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccC
Q 002389 646 HKCSGAVTALIYY-K-GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQ 722 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~-~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~t 722 (929)
.+|.+.|++++|+ + .++++++.||.|++||+.+++. +..+..|...+.+++|+|++++++ +++.|+.|++||+.+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY--KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE--EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE--EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 4899999999998 3 4789999999999999998754 677788999999999999999875 555899999999998
Q ss_pred CeEEEEEEeccCCCeE--EeccCCCEEEEEe--------cCCeEEEEeCCCc--eeeeccCCCeEEEEEe-CC-EE-EEE
Q 002389 723 RKLELIEVIATKEPIR--KLDTYGKTIFAST--------QGHRMKVIDSSRT--LKDIYRSKGIKSMSVV-QG-KI-YIG 787 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~--s~s~~g~~L~sgs--------~Dg~V~IWDl~~~--~~~l~~~~~V~sla~s-dg-~l-lsg 787 (929)
++..... .....+. +++++++.+++++ .|+.|++||+... .........+.+++|+ ++ .+ +++
T Consensus 244 ~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEEC--CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEe--cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence 8754332 2233344 4678999999988 4889999998732 2233334568889997 66 44 556
Q ss_pred ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC--------------CCeEEEEECCCCCeE
Q 002389 788 CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE--------------GSNIKEWRRHRKPQI 853 (929)
Q Consensus 788 s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d--------------DgtI~IWDl~~~~~i 853 (929)
+.++.|++||+.+++..... .+...+..+.++|++.+++..+.. ||.|++||..+++.+
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSI-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred cCCCEEEEEECCCCcEEEEe-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 88999999999876543321 235678899999998766555433 469999999999888
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC
Q 002389 854 SIAPEKGTTIQAMAVVEDFIYLNYNSS-ASSLQIWLRGT 891 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg~~LaSgS~-DG~I~IWdl~s 891 (929)
..+.++ ..+.+++|+|+|+++++++. |+.|++|+++.
T Consensus 395 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 395 EFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 877664 57999999999999988875 99999999864
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.84 E-value=1.5e-19 Score=205.19 Aligned_cols=232 Identities=11% Similarity=0.051 Sum_probs=141.9
Q ss_pred EEeecCCCCCCEEEEEEeC----------CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC-EEEEE
Q 002389 641 ILEASHKCSGAVTALIYYK----------GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE-SLLSG 709 (929)
Q Consensus 641 ~l~~~~gH~~~Vtsl~fs~----------~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~-~LaSg 709 (929)
.+....||.+.|++++|++ .+|||||.|++|+|||+.++.. +..+.+|..+|.+++|+|++. +|++|
T Consensus 128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE--EEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce--eeeecCCCCCcEEEEECCCCCceEEec
Confidence 3445679999999999962 3899999999999999987643 566778999999999999886 69999
Q ss_pred eCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe--CCE-EEE
Q 002389 710 SADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV--QGK-IYI 786 (929)
Q Consensus 710 s~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s--dg~-lls 786 (929)
+.||+|++||+.+++....... +.... ....++.......... ....+...+.++.|. ++. +++
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~-~~~~~------~~~~~s~~~~~~~~~~------~~~~~~~~v~~v~~~~~dg~~l~s 272 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQ-TELVK------NPWLLTLNTLPLVNTC------HSSGIASSLANVRWIGSDGSGILA 272 (393)
T ss_dssp ETTSEEEEEETTCCC-----------CS------CCCSEEEESGGGC------------CCSSSCSEEEEETTTTCEEEE
T ss_pred CCCCEEEEEECCCCcccccccc-cCCcc------cceEEecccccceeee------ecccccccceeeeeecCCCCEEEE
Confidence 9999999999998764321111 00000 0000000000000000 000123345566654 443 666
Q ss_pred EECCCcEEEEEccCCccceeccc-------------ccccccCCCCeEEEEEc-CCceEEEEEecCCCeEEEEECCCCCe
Q 002389 787 GCMDSSIQELAVSNNVEREIKAP-------------FKSWRLQSKPINSLVVY-KDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 787 gs~Dg~I~iwDl~tg~~~~i~~~-------------~~~~~~~~~~I~sl~~~-~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
++.|+.+++||+..+........ .+....+...+...... .+..++++++ +|++|++||..++..
T Consensus 273 ~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs-~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 273 MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS-QHGLIQLINTYEKDS 351 (393)
T ss_dssp ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET-TTTEEEEEETTCTTC
T ss_pred EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC-CCCEEEEEECCCCcE
Confidence 77777777777665432211000 00000111112222222 2344555554 789999999999888
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 853 ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 853 i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.....+|..+|++++|+|||++||+++.|| +.+|.+
T Consensus 352 ~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 352 NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 888888999999999999999999999666 656654
No 126
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=6.7e-18 Score=184.37 Aligned_cols=264 Identities=11% Similarity=0.128 Sum_probs=183.5
Q ss_pred EEEEECCCeEEEEECC-CCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEcc--CCeEEEEEEeccCCCe
Q 002389 662 LCSGFSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-KTIGVWQMV--QRKLELIEVIATKEPI 737 (929)
Q Consensus 662 LaSGs~DGtIrIWD~~-~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-gtIrIWDl~--tg~~~~~~~~~h~~~V 737 (929)
+++++.|+.|++||+. +++...+..+ .|...+.+++|+|+|++|++++.+ +.|++|++. +++............+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 4455789999999996 3333334443 577889999999999998888876 999999998 6664433332222233
Q ss_pred --EEeccCCCEEEEEec-CCeEEEEeCC-----CceeeeccCCCeEEEEEe-CCE-EEEEE-CCCcEEEEEccC-Cccce
Q 002389 738 --RKLDTYGKTIFASTQ-GHRMKVIDSS-----RTLKDIYRSKGIKSMSVV-QGK-IYIGC-MDSSIQELAVSN-NVERE 805 (929)
Q Consensus 738 --~s~s~~g~~L~sgs~-Dg~V~IWDl~-----~~~~~l~~~~~V~sla~s-dg~-llsgs-~Dg~I~iwDl~t-g~~~~ 805 (929)
.+++++++++++++. ++.|.+||+. .....+.....+.+++|+ +|+ +++++ .++.|.+||+.+ +....
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 357899998877765 7899999983 122333345568889997 665 76666 899999999987 54322
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CCe--EEEec----CC--CCCeEEEEEecCCCEE
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KPQ--ISIAP----EK--GTTIQAMAVVEDFIYL 875 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~--~~~--i~~l~----~h--~~~V~slafSpdg~~L 875 (929)
.... ......+..+..+.++|++.+++..+..++.|.+||.+. +.. ..... ++ ...+..++|+|+|+++
T Consensus 167 ~~~~-~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 167 QDPA-EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEE-EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eccc-ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 1100 000112456788999999987665555778999999853 432 22221 11 2367789999999988
Q ss_pred E-EEeCCCcEEEEECC----CCcEEEEEeCCCCeEEEEEc--CCEEEEEE-CCCcEEEee
Q 002389 876 N-YNSSASSLQIWLRG----TQQKVGRISAGSKITSLLTA--NDIVLCGT-ETGLIKGWI 927 (929)
Q Consensus 876 a-SgS~DG~I~IWdl~----sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs-~DG~I~IWd 927 (929)
+ +++.|+.|.+|++. +.+.+..+..+..+.+++|+ |++|++++ .|+.|.+|+
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 7 45579999999987 33456677766557777775 77888777 689999995
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.81 E-value=8.5e-19 Score=201.21 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=141.6
Q ss_pred CCCCCEEEEEEe--CC-EEEEEECCCeEEEEECCCCCe-----eEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEE
Q 002389 647 KCSGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSA-----MLVWDVKEHRKAVTSFSLFE-PGESLLSGSADKTIGV 717 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~~~~~~-----~~i~~l~gH~~~Vtslafsp-dg~~LaSgs~DgtIrI 717 (929)
+|.+.|++++|+ +. +|++|+.||+|++||+.++.. .....+.+|...|.+++|+| ++..|++|+.||.|++
T Consensus 179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 899999999998 33 999999999999999987321 12456779999999999999 6778999999999999
Q ss_pred EEccCCe--EEEEEEeccCCCeEE--eccCCC-EEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEeCCEEEEEECCCc
Q 002389 718 WQMVQRK--LELIEVIATKEPIRK--LDTYGK-TIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSS 792 (929)
Q Consensus 718 WDl~tg~--~~~~~~~~h~~~V~s--~s~~g~-~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~ 792 (929)
||++++. ........|...|.+ |++++. .+++ |+.||.
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t-------------------------------------g~~dg~ 301 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT-------------------------------------GSADKT 301 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE-------------------------------------EETTSE
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE-------------------------------------EeCCCe
Confidence 9998763 111122244444443 233333 3444 444555
Q ss_pred EEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCC--------------CCeEEEec
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHR--------------KPQISIAP 857 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~--------------~~~i~~l~ 857 (929)
|++||+++... +...+..|...+.++.++|++. ++++.+ .|+.|++||+.. ...+....
T Consensus 302 v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 302 VALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375 (430)
T ss_dssp EEEEETTCTTS-----CSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred EEEEeCCCCCC-----CeEEeecCCCCEEEEEECCCCCCEEEEEe-CCCcEEEEeCCCCccccCccccccCCcceEEEcC
Confidence 55555443211 1122344566677777776653 233333 556677777654 35667788
Q ss_pred CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCC
Q 002389 858 EKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 858 ~h~~~V~slafSpdg~-~LaSgS~DG~I~IWdl~s 891 (929)
+|...|++++|+|++. ++++++.||.|+||++..
T Consensus 376 ~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 8999999999999999 999999999999999764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.81 E-value=4e-18 Score=195.38 Aligned_cols=251 Identities=9% Similarity=0.041 Sum_probs=189.0
Q ss_pred CCCCCEEEEEEe----------------CCEEEEEECC------CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCC
Q 002389 647 KCSGAVTALIYY----------------KGLLCSGFSD------GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGE 704 (929)
Q Consensus 647 gH~~~Vtsl~fs----------------~~~LaSGs~D------GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~ 704 (929)
+|...+..++++ ++.++.++.+ ++|++||..+.. ...+.+|...|.+++|+|||+
T Consensus 115 ~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~---~~~l~~~~~~v~~~~~Spdg~ 191 (415)
T 2hqs_A 115 VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGS 191 (415)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS---CEEEEEESSCEEEEEECTTSS
T ss_pred cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC---CEEEeCCCCcceeeEEcCCCC
Confidence 556666666554 4566666654 799999998654 466778999999999999999
Q ss_pred EEEEEeCCC---eEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEE-EEecCC--eEEEEeCCC-ceeeecc-CCCe
Q 002389 705 SLLSGSADK---TIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIF-ASTQGH--RMKVIDSSR-TLKDIYR-SKGI 774 (929)
Q Consensus 705 ~LaSgs~Dg---tIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~-sgs~Dg--~V~IWDl~~-~~~~l~~-~~~V 774 (929)
+|++++.|+ .|++||+.+++.. ....+...+. +|+|+|+.++ +++.++ .|++||+.. ....+.. ...+
T Consensus 192 ~la~~s~~~~~~~i~~~d~~tg~~~--~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~ 269 (415)
T 2hqs_A 192 KLAYVTFESGRSALVIQTLANGAVR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN 269 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEE--EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCE
T ss_pred EEEEEEecCCCcEEEEEECCCCcEE--EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcc
Confidence 999999885 9999999998754 3445556665 4789999887 556555 599999873 3334433 4468
Q ss_pred EEEEEe-CCE-EEEEEC-CC--cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC--CeEEEEEC
Q 002389 775 KSMSVV-QGK-IYIGCM-DS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG--SNIKEWRR 847 (929)
Q Consensus 775 ~sla~s-dg~-llsgs~-Dg--~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD--gtI~IWDl 847 (929)
.+++|+ +|+ +++++. ++ .|++||+.++....+ ..+...+..+.++|++.+++..+.++ ..|++||.
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l-------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE-------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 899997 776 666665 44 677778887654322 23456788899999998877666443 58999999
Q ss_pred CCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCC-CCeEEEEEcCC
Q 002389 848 HRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---SLQIWLRGTQQKVGRISAG-SKITSLLTAND 912 (929)
Q Consensus 848 ~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG---~I~IWdl~sg~~i~tl~~h-~~Vtsvs~dg~ 912 (929)
.++... .+..|. .+.+++|+|||++|++++.|+ .|++||+. +.....+..| +.|++++|++.
T Consensus 343 ~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 343 ATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp TTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred CCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 988864 455554 899999999999999998777 79999986 5667778877 45999999864
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=9.1e-18 Score=192.43 Aligned_cols=269 Identities=11% Similarity=0.035 Sum_probs=199.6
Q ss_pred CCCEEEEEEe-CC--EEEEEE----CCC----eEEEEEC--CCCCeeEEEEeccCCCcEEEEEEcC--------------
Q 002389 649 SGAVTALIYY-KG--LLCSGF----SDG----SIKMWDI--KKQSAMLVWDVKEHRKAVTSFSLFE-------------- 701 (929)
Q Consensus 649 ~~~Vtsl~fs-~~--~LaSGs----~DG----tIrIWD~--~~~~~~~i~~l~gH~~~Vtslafsp-------------- 701 (929)
...|....|. .+ .+++|+ .|| +|++||+ .+++......+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3456666776 33 677876 568 9999999 8876533466889998888887765
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCC---eEEEEeCCC-ceeeec
Q 002389 702 PGESLLSGSAD------KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGH---RMKVIDSSR-TLKDIY 769 (929)
Q Consensus 702 dg~~LaSgs~D------gtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg---~V~IWDl~~-~~~~l~ 769 (929)
.+..++.++.+ ++|++||+..+.. ....+|...+. +|+|+|+.+++++.++ .|++||+.. ....+.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 26677666654 7999999976543 33345667776 4789999999999875 999999873 333333
Q ss_pred -cCCCeEEEEEe-CCE-EE-EEECCCc--EEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--e
Q 002389 770 -RSKGIKSMSVV-QGK-IY-IGCMDSS--IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--N 841 (929)
Q Consensus 770 -~~~~V~sla~s-dg~-ll-sgs~Dg~--I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--t 841 (929)
....+.+++|+ +|+ ++ +++.++. |++||+.++....+ ..+...+..+.++|++.+++..+.+++ .
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l-------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-------CCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC-------cCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 34568999998 776 55 4555554 99999988654332 345678899999999987776664455 6
Q ss_pred EEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEE
Q 002389 842 IKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---SSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLC 916 (929)
Q Consensus 842 I~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---G~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaS 916 (929)
|.+||..++.. ..+..|...+.+++|+|||++|++++.+ +.|++||+.+++. ..+..+..+.+++|+ |++|++
T Consensus 293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIY 370 (415)
T ss_dssp EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEE
T ss_pred EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCCCcCCeEEcCCCCEEEE
Confidence 88889888774 4455677889999999999999988864 5899999998877 345555578887765 788888
Q ss_pred EECCC---cEEEeec
Q 002389 917 GTETG---LIKGWIP 928 (929)
Q Consensus 917 gs~DG---~I~IWdi 928 (929)
++.|+ .|++|++
T Consensus 371 ~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 371 SSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEETTEEEEEEEET
T ss_pred EEcCCCccEEEEEEC
Confidence 88877 7999974
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=1.2e-16 Score=174.61 Aligned_cols=262 Identities=7% Similarity=0.015 Sum_probs=186.3
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCCeEEEEEEeccCCCeE-
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQRKLELIEVIATKEPIR- 738 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-DgtIrIWDl~tg~~~~~~~~~h~~~V~- 738 (929)
.+++++.++.|++||..+++. ...+..+...+ +++|+|+|+++++++. ++.|.+||..+++........+..+..
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEI--LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCE--EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEEecCCCeEEEEeCcccce--eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 578888999999999998865 45555556667 9999999998666655 899999999998862333333444444
Q ss_pred -EeccCCCEEEEEecCC---eEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-EEEE-ECCCc-EEEEEccCCccceecc
Q 002389 739 -KLDTYGKTIFASTQGH---RMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-IYIG-CMDSS-IQELAVSNNVEREIKA 808 (929)
Q Consensus 739 -s~s~~g~~L~sgs~Dg---~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-llsg-s~Dg~-I~iwDl~tg~~~~i~~ 808 (929)
++++++++++++..++ .|.+||... ....+.......+++|+ +|+ ++++ ..++. +.+|++..........
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 6889999999555553 899999873 33344456668899997 775 5554 55688 9999987533211100
Q ss_pred cccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe---EEEecCCCCCeEEEEEecCCCEEEEEe-CCCcE
Q 002389 809 PFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ---ISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSL 884 (929)
Q Consensus 809 ~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~---i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I 884 (929)
.... .....+..+.++|++.++...+..++.|.+||..++.. +..+..+ ..+..++|+|||++++.++ .++.|
T Consensus 169 -~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i 245 (331)
T 3u4y_A 169 -QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDV 245 (331)
T ss_dssp -EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEE
T ss_pred -Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEE
Confidence 0111 23455789999999976655555788999999998887 6666544 5678999999999776554 57899
Q ss_pred EEEECCCCcE--EEEEeCC----CC----eE--EEEEcCCEEEEEE-CCCcEEEeec
Q 002389 885 QIWLRGTQQK--VGRISAG----SK----IT--SLLTANDIVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 885 ~IWdl~sg~~--i~tl~~h----~~----Vt--svs~dg~~LaSgs-~DG~I~IWdi 928 (929)
.+||..+++. +..+..+ .. .. +++++|++|++++ .++.|.+|++
T Consensus 246 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 246 FNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp EEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 9999999887 5555543 11 22 3445677776555 5679999985
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=9.2e-18 Score=178.12 Aligned_cols=249 Identities=11% Similarity=-0.004 Sum_probs=179.8
Q ss_pred EEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeEEEEEEeccCCCe--EEe
Q 002389 664 SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELIEVIATKEPI--RKL 740 (929)
Q Consensus 664 SGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~~~~~~~~h~~~V--~s~ 740 (929)
+++.|++|++||+.+++. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++........+...+ ..|
T Consensus 17 ~~~~~~~i~~~d~~~~~~---~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM---RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEE---EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCce---eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 456789999999998753 35567899999999999999999987 88999999998 765433222222344 368
Q ss_pred ccCCCEEEEEe--cCCeEEEE--eCC-CceeeeccCCCeEEEEEe-CCE-EE-EEECCCcEEEEEccCCccceecccccc
Q 002389 741 DTYGKTIFAST--QGHRMKVI--DSS-RTLKDIYRSKGIKSMSVV-QGK-IY-IGCMDSSIQELAVSNNVEREIKAPFKS 812 (929)
Q Consensus 741 s~~g~~L~sgs--~Dg~V~IW--Dl~-~~~~~l~~~~~V~sla~s-dg~-ll-sgs~Dg~I~iwDl~tg~~~~i~~~~~~ 812 (929)
+++++.+++++ .++...+| +.. +....+.....+..++|+ +|+ ++ +++.++.+.+|++....... ..
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-----~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-----TR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-----EE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-----eE
Confidence 89999999998 33445555 444 344445555568888997 665 54 67789999999865321111 12
Q ss_pred cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC----------
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA---------- 881 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D---------- 881 (929)
...+...+..+.++|++.+++..+..++.+++|+.+ .+.....+..|...+..++|+|+|++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 234567889999999998776665457788999875 445567777888889999999999999988866
Q ss_pred -CcEEEEECCCCcE--EEEEeCC-CCeEEEEEc--CCEEEEEECCC
Q 002389 882 -SSLQIWLRGTQQK--VGRISAG-SKITSLLTA--NDIVLCGTETG 921 (929)
Q Consensus 882 -G~I~IWdl~sg~~--i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG 921 (929)
+.|++||+.+++. +..+.+| ..+.+++|+ ++.|++++.|.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988866 4445455 357776665 77887776653
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=3.1e-17 Score=195.02 Aligned_cols=257 Identities=8% Similarity=-0.020 Sum_probs=192.4
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc--cCCeEEEEEEeccCCCeE
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQM--VQRKLELIEVIATKEPIR 738 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl--~tg~~~~~~~~~h~~~V~ 738 (929)
.+++++.|++|.+||..+++. +.++..+.. +.+++|+|||++|++++.|++|++||+ .+++...... +.....
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~--~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~ 225 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKI--VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEAR 225 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCE--EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEE
T ss_pred EEEEEcCCCeEEEEECCCceE--EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcc
Confidence 688889999999999998864 677763333 899999999999999999999999999 7776544333 222233
Q ss_pred --Eecc----CCCEEEEEe-cCCeEEEEeCCC--ceeeecc------------CCCeEEEEEe-CC-E-EEEEECCCcEE
Q 002389 739 --KLDT----YGKTIFAST-QGHRMKVIDSSR--TLKDIYR------------SKGIKSMSVV-QG-K-IYIGCMDSSIQ 794 (929)
Q Consensus 739 --s~s~----~g~~L~sgs-~Dg~V~IWDl~~--~~~~l~~------------~~~V~sla~s-dg-~-llsgs~Dg~I~ 794 (929)
.|++ +|+++++++ .+++|.+||... ....+.. ...+..+.++ ++ . +++...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 5788 999999988 489999999762 2333321 2257888887 34 4 55677899999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC----CCCCeEEEEEec
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE----KGTTIQAMAVVE 870 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~----h~~~V~slafSp 870 (929)
+||..+++...+. .. .+...+..+.++|++.+++..+..+++|.+||..++++...+.. |......+ ++|
T Consensus 306 vvd~~~~~~l~~~----~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 306 LVNYKDIDNLTVT----SI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp EEECTTSSSCEEE----EE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred EEEecCCCcceeE----Ee-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 9999875432210 11 23566778999999988776665778999999999998877763 54433333 577
Q ss_pred C-CCEEEEEe-CCCcEEEEECCC-------CcEEEEEeCCC-CeEEEE--EcCCEEEEEE-------CCCcEEEeec
Q 002389 871 D-FIYLNYNS-SASSLQIWLRGT-------QQKVGRISAGS-KITSLL--TANDIVLCGT-------ETGLIKGWIP 928 (929)
Q Consensus 871 d-g~~LaSgS-~DG~I~IWdl~s-------g~~i~tl~~h~-~Vtsvs--~dg~~LaSgs-------~DG~I~IWdi 928 (929)
+ |..+++++ .|++|.+||..+ ++.+.++.+|+ .+..+. +++++|++++ .+++|.+||+
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 7 66677775 689999999988 89999999884 355555 5588999987 2789999996
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=3.8e-17 Score=177.87 Aligned_cols=256 Identities=12% Similarity=0.021 Sum_probs=182.2
Q ss_pred CEEEEEECCCeEEEEECCCCCeeEEEEec-cCCC-cEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCeEEEEEEecc---
Q 002389 660 GLLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRK-AVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEVIAT--- 733 (929)
Q Consensus 660 ~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-gH~~-~Vtslafspdg~~L-aSgs~DgtIrIWDl~tg~~~~~~~~~h--- 733 (929)
+++++++.+++|++||..+++. +..+. ++.. .+.+++|+|+|+++ ++++.++.|.+||+.+++.......++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4789999999999999998754 44553 2222 47889999999875 566678999999999987654443332
Q ss_pred ---CCCeEEeccCCCEEEEEe------------cCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCE-EEEEECCCcEE
Q 002389 734 ---KEPIRKLDTYGKTIFAST------------QGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGK-IYIGCMDSSIQ 794 (929)
Q Consensus 734 ---~~~V~s~s~~g~~L~sgs------------~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~-llsgs~Dg~I~ 794 (929)
...-..++++++++++++ .++.|.+||... ....+.....+.+++++ +|+ ++++ ++.|.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEE
Confidence 222346889999998886 579999999874 23334445567888897 776 6655 78999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC-----------------------eEEEEECCCCC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS-----------------------NIKEWRRHRKP 851 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg-----------------------tI~IWDl~~~~ 851 (929)
+||+.+++....... ..+ ..++ .++|++..+...+..++ .|.+||..+++
T Consensus 158 ~~d~~~~~~~~~~~~-~~~---~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 158 VMDPEAGTLVEDKPI-QSW---EAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp EEETTTTEEEEEECS-TTT---TTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred EEECCCCcEeeeeec-ccc---CCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 999988764322110 000 0111 33444332211111111 57999999887
Q ss_pred eE-EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 852 QI-SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 852 ~i-~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.. ..+..+...+.+++|+|||++++++ ++.|++||..+++.+..+..+..+.+++|+ |+++++++.|+.|++||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 64 2334566678899999999999988 799999999999999988877677787765 778888999999999985
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.77 E-value=1.8e-16 Score=188.36 Aligned_cols=271 Identities=9% Similarity=-0.006 Sum_probs=197.2
Q ss_pred EEEEEEe-C-CEEEEEECCCeEEEEEC--CCCCeeEEEEeccCCCcEEEEEEcC----CCCEEEEEe-CCCeEEEEEccC
Q 002389 652 VTALIYY-K-GLLCSGFSDGSIKMWDI--KKQSAMLVWDVKEHRKAVTSFSLFE----PGESLLSGS-ADKTIGVWQMVQ 722 (929)
Q Consensus 652 Vtsl~fs-~-~~LaSGs~DGtIrIWD~--~~~~~~~i~~l~gH~~~Vtslafsp----dg~~LaSgs-~DgtIrIWDl~t 722 (929)
+.+++|+ + .++++++.|++|++||+ .+++ .+.++. +...+..++|+| ||+++++++ .+++|.+||..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 8899999 4 48999999999999999 6654 467776 455689999999 999998887 489999999999
Q ss_pred CeEEEEEEe-c--------cCC-CeEE--eccCCC-EEEEEecCCeEEEEeCCC--cee--eeccCCCeEEEEEe-CCE-
Q 002389 723 RKLELIEVI-A--------TKE-PIRK--LDTYGK-TIFASTQGHRMKVIDSSR--TLK--DIYRSKGIKSMSVV-QGK- 783 (929)
Q Consensus 723 g~~~~~~~~-~--------h~~-~V~s--~s~~g~-~L~sgs~Dg~V~IWDl~~--~~~--~l~~~~~V~sla~s-dg~- 783 (929)
+++...... + |.. .+.+ +++++. .+++...++.|.+||... ... .+.....+.++.|+ +|+
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 876544332 1 112 3444 466555 556667789999999873 222 33445668888997 776
Q ss_pred EEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-ceEEEEEecCCCeEEEEECCC-------CCeEE
Q 002389 784 IYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASSSVEGSNIKEWRRHR-------KPQIS 854 (929)
Q Consensus 784 llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-~i~~~s~S~dDgtI~IWDl~~-------~~~i~ 854 (929)
++++ ..+++|.+||..+++........ ...|......+ .+|+ +...++.+..|++|.+||..+ .++++
T Consensus 338 l~va~~~~~~v~v~D~~tg~l~~~i~~g--~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~ 414 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDRRLSALVDVG--KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 414 (543)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECS--SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEecCCCeEEEEECCCCeEEEeeccC--CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence 5554 46899999999998654332100 01122222233 4665 544455444678999999988 88999
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEECCCCcEE-EEE--------eCC-CCeEEEEEc--CCEEE
Q 002389 855 IAPEKGTTIQAMAVVEDFIYLNYNS-------SASSLQIWLRGTQQKV-GRI--------SAG-SKITSLLTA--NDIVL 915 (929)
Q Consensus 855 ~l~~h~~~V~slafSpdg~~LaSgS-------~DG~I~IWdl~sg~~i-~tl--------~~h-~~Vtsvs~d--g~~La 915 (929)
++.+|...+..++++|||++|++++ .+++|.+||+.+++.. ..+ ..+ ..+..+.|+ |+.++
T Consensus 415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 9999999899999999999999987 2789999999999887 554 223 448888876 77777
Q ss_pred EEE-----CCCcEEEeec
Q 002389 916 CGT-----ETGLIKGWIP 928 (929)
Q Consensus 916 Sgs-----~DG~I~IWdi 928 (929)
++. .|+.|.|||.
T Consensus 495 ~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEECCTTSCCEEEEEET
T ss_pred EEeecCCCCCCeEEEEEC
Confidence 552 4799999985
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.76 E-value=4.6e-16 Score=169.73 Aligned_cols=261 Identities=12% Similarity=0.161 Sum_probs=176.7
Q ss_pred CCCCCEEEEEEe--CCEEEEEECC-CeEEEEECC--CCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 002389 647 KCSGAVTALIYY--KGLLCSGFSD-GSIKMWDIK--KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQM 720 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~~LaSGs~D-GtIrIWD~~--~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl 720 (929)
.|...+.+++|+ +.++++++.+ +.|++|++. +++...+..+..+. .+.+++|+|+|+++++++ .++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 467789999998 3478888876 999999998 55555555665544 789999999999876665 4899999999
Q ss_pred cCCeE-EEEEEeccCCCeE--EeccCCCEEEEEe-cCCeEEEEeCCC--cee-----ee--ccCCCeEEEEEe-CCE-EE
Q 002389 721 VQRKL-ELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSSR--TLK-----DI--YRSKGIKSMSVV-QGK-IY 785 (929)
Q Consensus 721 ~tg~~-~~~~~~~h~~~V~--s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~-----~l--~~~~~V~sla~s-dg~-ll 785 (929)
.++.. ...........+. .++++++++++++ .++.|.+||+.. ... .. .....+..++|+ +|+ ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 53321 1122222222333 5889999888887 889999999874 222 11 124468889997 665 55
Q ss_pred EEE-CCCcEEEEEccC--Cccceecccccccc---cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CC--CeEEE
Q 002389 786 IGC-MDSSIQELAVSN--NVEREIKAPFKSWR---LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RK--PQISI 855 (929)
Q Consensus 786 sgs-~Dg~I~iwDl~t--g~~~~i~~~~~~~~---~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~--~~--~~i~~ 855 (929)
+++ .++.+.+|++.. +........ .... .....+..+.++|++.+++.....++.|.+||+. ++ ..+..
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTL-DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEE-ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeec-cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 544 789999999954 332211100 1011 1133566899999987666555567899999987 33 33444
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE--ECCCCc--EEEEEeCCCCeEEEEEc
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNS-SASSLQIW--LRGTQQ--KVGRISAGSKITSLLTA 910 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IW--dl~sg~--~i~tl~~h~~Vtsvs~d 910 (929)
+..+.. +.+++|+|+|+++++++ .|+.|.+| |..+++ .+..+..+....+++|.
T Consensus 273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~ 331 (343)
T 1ri6_A 273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN 331 (343)
T ss_dssp EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEE
Confidence 444444 88999999999988887 68999999 455664 45666665444555543
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=6.7e-17 Score=197.55 Aligned_cols=270 Identities=11% Similarity=0.061 Sum_probs=192.9
Q ss_pred CCCEEEEEEe-CC-EEEEEEC-CC-----eEEEEECCCCCeeEEEEeccCC----------------------CcEEEEE
Q 002389 649 SGAVTALIYY-KG-LLCSGFS-DG-----SIKMWDIKKQSAMLVWDVKEHR----------------------KAVTSFS 698 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~-DG-----tIrIWD~~~~~~~~i~~l~gH~----------------------~~Vtsla 698 (929)
...|++++|+ ++ +|++++. || +|++||+.+++...+.....+. ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 5579999999 44 8999998 88 9999999988653333222222 3488999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCC---eEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCc-eeeecc-C
Q 002389 699 LFEPGESLLSGSADKTIGVWQMVQR---KLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRT-LKDIYR-S 771 (929)
Q Consensus 699 fspdg~~LaSgs~DgtIrIWDl~tg---~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~-~ 771 (929)
|+|||++|++++. +.|++||+.++ ... ....+...+. .|+|+|+++++++ ++.|++||+... ...+.. .
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 99999999887 432 2234445555 5899999999887 468999998742 222222 1
Q ss_pred CC-----------------eEEEEEe-CCE-EEEEECCC---------------------------------cEEEEEcc
Q 002389 772 KG-----------------IKSMSVV-QGK-IYIGCMDS---------------------------------SIQELAVS 799 (929)
Q Consensus 772 ~~-----------------V~sla~s-dg~-llsgs~Dg---------------------------------~I~iwDl~ 799 (929)
.. +.++.|+ ||+ +++++.|+ .|++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 11 4678898 777 77776655 78888988
Q ss_pred C-CccceecccccccccCCCCeEEEEEcCCceEEEEEec----CCCeEEEEECCCCCeEEEecCCCC----CeEEEEEec
Q 002389 800 N-NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV----EGSNIKEWRRHRKPQISIAPEKGT----TIQAMAVVE 870 (929)
Q Consensus 800 t-g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~----dDgtI~IWDl~~~~~i~~l~~h~~----~V~slafSp 870 (929)
+ ++...+..+ ..+...+..+.+ |++.+++..+. .+..|++||..++........+.. .+..++|+|
T Consensus 272 ~~~~~~~~~~~----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 272 EQAQTQWIDLG----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp TTCCCEEECCC----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred CCCceEEecCC----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 7 765433211 135667889999 99877664432 346899999999987776665543 456899999
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCcEEEEEeCCC-CeEEE---EEcCCEEE-EEECCC--cEEEeec
Q 002389 871 DFIYLNYNSSASSLQIWLRG-TQQKVGRISAGS-KITSL---LTANDIVL-CGTETG--LIKGWIP 928 (929)
Q Consensus 871 dg~~LaSgS~DG~I~IWdl~-sg~~i~tl~~h~-~Vtsv---s~dg~~La-Sgs~DG--~I~IWdi 928 (929)
||+++++++.||.++||.+. +++ ...+..|. .|.++ +++|+.|+ +++.|+ .+++|++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 99999999999988888765 445 67776664 36654 34577664 555565 8999974
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.73 E-value=4e-15 Score=163.48 Aligned_cols=265 Identities=9% Similarity=0.047 Sum_probs=191.9
Q ss_pred CCCEEEEEEe-C-CEEEEEEC-------CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEE
Q 002389 649 SGAVTALIYY-K-GLLCSGFS-------DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVW 718 (929)
Q Consensus 649 ~~~Vtsl~fs-~-~~LaSGs~-------DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~L-aSgs~DgtIrIW 718 (929)
...+..++|+ + +++++++. ++.|.+||..+++. +..+.. ...+.+++|+|+|+++ +++..++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 4568899999 3 47777664 57899999998864 455533 3457889999999965 455668999999
Q ss_pred EccCCeEEEEEEeccCCC--------e--EEeccCCCEEEEEe--cCCeEEEEeCCCc--eeeec-cCCCeEEEEEe-CC
Q 002389 719 QMVQRKLELIEVIATKEP--------I--RKLDTYGKTIFAST--QGHRMKVIDSSRT--LKDIY-RSKGIKSMSVV-QG 782 (929)
Q Consensus 719 Dl~tg~~~~~~~~~h~~~--------V--~s~s~~g~~L~sgs--~Dg~V~IWDl~~~--~~~l~-~~~~V~sla~s-dg 782 (929)
|..+++.......+.... + ..++++++.+++++ .++.|.+||.... ...+. ....+.+++++ +|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999988654443322111 2 25788999888876 4788999998732 33333 34457888887 55
Q ss_pred E-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC
Q 002389 783 K-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT 861 (929)
Q Consensus 783 ~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~ 861 (929)
+ +++++.++.+.+||..+++....... .-.++...+..+.++|++.++...+..++.|.+||..+++....+..+.
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 4 88888899999999988765432110 0012345677899999887666555567899999999998877665443
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECC
Q 002389 862 TIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTET 920 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~D 920 (929)
...++|+|+|++++.++ .++.|.+||..+++.+..+..+..+.+++|+ |++++.+..+
T Consensus 274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25799999999665555 7899999999999999999887778888875 7766665554
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.71 E-value=4e-15 Score=162.94 Aligned_cols=267 Identities=9% Similarity=0.018 Sum_probs=173.0
Q ss_pred EEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEE-EEEeCCCeEEEEEccCCeEEEEEE
Q 002389 655 LIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESL-LSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 655 l~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~L-aSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
++++ ++ ++++++.+++|++||..+++. +..+..+. ..+..++|+|+|+++ ++++.++.|.+||+.+++......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE--EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcE--EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3455 33 788999999999999998754 55554333 257889999999975 566678999999999887654433
Q ss_pred eccC-------CCeEEeccCCCEEEEEecC------------CeEEEEeCCC-----ceeeeccCCCeEEEEEe-CCEEE
Q 002389 731 IATK-------EPIRKLDTYGKTIFASTQG------------HRMKVIDSSR-----TLKDIYRSKGIKSMSVV-QGKIY 785 (929)
Q Consensus 731 ~~h~-------~~V~s~s~~g~~L~sgs~D------------g~V~IWDl~~-----~~~~l~~~~~V~sla~s-dg~ll 785 (929)
..+. ..-..++++++++++++.+ +.|.+||+.. ..........+.+++++ +|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~ 162 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 162 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEE
Confidence 3221 1223688999999998865 8999999863 12233344568888897 77766
Q ss_pred EEECCCcEEEEEccCCccceeccccccccc--------------CCC-----CeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRL--------------QSK-----PINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~--------------~~~-----~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
+++ +.|.+||..+++....... ..+.. ... ....+.++++.............+..+|
T Consensus 163 ~~~--~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTGKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EES--SSEEEECTTTCCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred Ecc--CcEEEEeCCCCceeccccc-cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 654 4499999988764332110 10000 000 1122333322100000000001122244
Q ss_pred CCCCCeE-EEecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CCEEEEEECCCc
Q 002389 847 RHRKPQI-SIAPEKGTTIQAMAVVE-DFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA--NDIVLCGTETGL 922 (929)
Q Consensus 847 l~~~~~i-~~l~~h~~~V~slafSp-dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~ 922 (929)
..++... .....+...+..++|+| ||++++++ ++.|.+||+.+++.+..+..+..+.+++|+ |+.|++++.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 317 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCe
Confidence 4444321 11223556788999999 99999988 899999999999999888876667777765 678888888999
Q ss_pred EEEeec
Q 002389 923 IKGWIP 928 (929)
Q Consensus 923 I~IWdi 928 (929)
|++||+
T Consensus 318 v~v~d~ 323 (349)
T 1jmx_B 318 LAVFNP 323 (349)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 999985
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.70 E-value=9e-15 Score=161.52 Aligned_cols=256 Identities=13% Similarity=0.080 Sum_probs=171.1
Q ss_pred CCCeEEEEECC--CCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEccCCeEEEEEE-eccCCCe--E
Q 002389 667 SDGSIKMWDIK--KQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA---DKTIGVWQMVQRKLELIEV-IATKEPI--R 738 (929)
Q Consensus 667 ~DGtIrIWD~~--~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~---DgtIrIWDl~tg~~~~~~~-~~h~~~V--~ 738 (929)
.++.|.+|+++ +++...+. ...+...+..++|+|||+ |++++. ++.|.+||+.+++...... ..+...+ .
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 35667777665 44433222 335567788899999999 665554 6899999998876543332 2233333 3
Q ss_pred EeccCCCEEEEEe-cCCeEEEEeCCC--ceee---ecc----------CCCeEEEEEe-CCEEEEE-ECCCcEEEEEcc-
Q 002389 739 KLDTYGKTIFAST-QGHRMKVIDSSR--TLKD---IYR----------SKGIKSMSVV-QGKIYIG-CMDSSIQELAVS- 799 (929)
Q Consensus 739 s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~~---l~~----------~~~V~sla~s-dg~llsg-s~Dg~I~iwDl~- 799 (929)
+++++++++++++ .++.+.+|++.. .... +.. ...+.+++++ +|+++++ ..++.|.+|++.
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 6889999998888 678999999862 2221 111 1237789997 7775554 457889999998
Q ss_pred CCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC--CCe--EEEecCCC------CCeEEEEEe
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KPQ--ISIAPEKG------TTIQAMAVV 869 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~--~~~--i~~l~~h~------~~V~slafS 869 (929)
++...... ......+..+..+.++|++.+++..+..++.|.+|+.+. +.. ........ ..+..++|+
T Consensus 172 ~g~~~~~~---~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 172 AGQLSEQS---VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp TSCEEEEE---EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred CCcEEEee---eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 44332211 001112345678999999986666665778999999764 442 22222222 358899999
Q ss_pred cCCCEE-EEEeCCCcEEEEECC---CCcEEEEEeCCC-CeEEEEEc--CCEEEEEECC-CcEEEee
Q 002389 870 EDFIYL-NYNSSASSLQIWLRG---TQQKVGRISAGS-KITSLLTA--NDIVLCGTET-GLIKGWI 927 (929)
Q Consensus 870 pdg~~L-aSgS~DG~I~IWdl~---sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~D-G~I~IWd 927 (929)
|||++| +++..++.|.+|++. ..+.+..+..++ .+.+++|+ |++|++++.+ +.|.+|+
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 999987 566678999999986 335567777653 37777765 7788887764 8999994
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=3.5e-15 Score=181.47 Aligned_cols=271 Identities=7% Similarity=0.021 Sum_probs=187.1
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-----
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ----- 722 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t----- 722 (929)
...|++++|+ ++.++.+ .|++|++||+.+++. ..+..|...+.+++|+|||++|+++ .|+.|++||+.+
T Consensus 81 ~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 81 AFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKV---TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp -CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEE---EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred ccCceeEEECCCCeEEEE-ECCEEEEEECCCCce---EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 3679999999 5565555 469999999998753 3455677789999999999999985 689999999988
Q ss_pred CeEEEEEEeccCC---------------CeEEeccCCCEEEEEe---------------------------------cCC
Q 002389 723 RKLELIEVIATKE---------------PIRKLDTYGKTIFAST---------------------------------QGH 754 (929)
Q Consensus 723 g~~~~~~~~~h~~---------------~V~s~s~~g~~L~sgs---------------------------------~Dg 754 (929)
++.......+... .-..|+|+|+++++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 7643322222221 2235899999999987 346
Q ss_pred eEEEEeCCCce-eeec----cCCCeEEEEEe-CCE-EEEEECCC-----cEEEEEccCC-ccceecccccccccCCCCeE
Q 002389 755 RMKVIDSSRTL-KDIY----RSKGIKSMSVV-QGK-IYIGCMDS-----SIQELAVSNN-VEREIKAPFKSWRLQSKPIN 821 (929)
Q Consensus 755 ~V~IWDl~~~~-~~l~----~~~~V~sla~s-dg~-llsgs~Dg-----~I~iwDl~tg-~~~~i~~~~~~~~~~~~~I~ 821 (929)
.|++||+.... ..+. ....+.+++|+ ||+ +++++.++ .|.+||+.++ ....+..... ......+.
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~ 313 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLH 313 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCS
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccC
Confidence 89999987432 2222 12458899997 776 77766665 8999999987 3333211000 00012345
Q ss_pred EEEEcC--CceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEE-EEEecCCCEEEEEeCC-C----cEEEEECCCC
Q 002389 822 SLVVYK--DWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQA-MAVVEDFIYLNYNSSA-S----SLQIWLRGTQ 892 (929)
Q Consensus 822 sl~~~~--d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~s-lafSpdg~~LaSgS~D-G----~I~IWdl~sg 892 (929)
.+.++| ++.++++.+ .|+.+++|+.+ .+.....+..|...+.. ++|+|||+.|+.++.+ + .|+.||..++
T Consensus 314 ~~~~sp~~dg~~l~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSR-RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CCEECTTCSSEEEEEEC-TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CceeecCCCCEEEEEEc-cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 678899 888766554 66788888865 55667777788778877 7999999988665544 4 6777787776
Q ss_pred cEEEEEeCCCCeEEEEEc--CCEEEEEECC----CcEEEeec
Q 002389 893 QKVGRISAGSKITSLLTA--NDIVLCGTET----GLIKGWIP 928 (929)
Q Consensus 893 ~~i~tl~~h~~Vtsvs~d--g~~LaSgs~D----G~I~IWdi 928 (929)
+ ...+.....+.+++|+ |++++.++.+ +.|++||.
T Consensus 393 ~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 393 K-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp C-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred C-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 5 4444434458777765 7777665443 56999985
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.69 E-value=7.6e-16 Score=183.38 Aligned_cols=260 Identities=10% Similarity=0.005 Sum_probs=183.6
Q ss_pred CCCEEEEEEe-CC-EEEEEEC-CCeEEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEEEEEeC---CCeEEEEEcc
Q 002389 649 SGAVTALIYY-KG-LLCSGFS-DGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSA---DKTIGVWQMV 721 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~-DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~LaSgs~---DgtIrIWDl~ 721 (929)
..+|++++|+ |+ +||+++. ||+++||++.+++ ...+..|. ..|.+++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC---cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 5679999999 54 8888877 9999999997664 34455555 68999999999 77777765 5556666554
Q ss_pred C---CeEEEEEEeccCCCeEEeccCCCE-EEEEecCCeEEEEeCCC-ceeeeccCCCeEEEEEe-CCE-EEEEECC----
Q 002389 722 Q---RKLELIEVIATKEPIRKLDTYGKT-IFASTQGHRMKVIDSSR-TLKDIYRSKGIKSMSVV-QGK-IYIGCMD---- 790 (929)
Q Consensus 722 t---g~~~~~~~~~h~~~V~s~s~~g~~-L~sgs~Dg~V~IWDl~~-~~~~l~~~~~V~sla~s-dg~-llsgs~D---- 790 (929)
. +... .........+.+++++++. +++.+.++.+.+||+.. ....+..... .+++|+ ||+ +++++.+
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTE
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCC
Confidence 3 2222 1111222235578888874 34444455566999874 3333333333 778886 777 5556655
Q ss_pred CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCCeEEEecCCCCCeEEEE-
Q 002389 791 SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMA- 867 (929)
Q Consensus 791 g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~sla- 867 (929)
+.|++||+.+++...+ ..+...+..+.++|++..+++.. .++ .|++||..++... .+.+|...+..++
T Consensus 175 ~~i~~~d~~~g~~~~l-------~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 175 VSLFTSNLSSGGLRVF-------DSGEGSFSSASISPGMKVTAGLE-TAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEEEETTTCCCEEE-------CCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred eEEEEEcCCCCCceEe-------ecCCCccccceECCCCCEEEEcc-CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 7799999988765433 34566789999999998887443 666 8999999998877 7778887777777
Q ss_pred -------EecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEc-CCEEEEEECCCc---EEEee
Q 002389 868 -------VVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLTA-NDIVLCGTETGL---IKGWI 927 (929)
Q Consensus 868 -------fSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d-g~~LaSgs~DG~---I~IWd 927 (929)
|+|||.++++++.||++++|++ |+..... .+.|.+++|+ ++++++++.+.+ +++|+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~--~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP--QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC--SSEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC--CCceEEEEecCCEEEEEEcCCCCCCeEEEEc
Confidence 9999999999999999999999 6655422 2347776665 668888887754 66665
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=3.1e-14 Score=158.26 Aligned_cols=265 Identities=14% Similarity=0.150 Sum_probs=177.2
Q ss_pred EEEEEE----CCCeEEEEEC--CCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEccC--CeEEEE
Q 002389 661 LLCSGF----SDGSIKMWDI--KKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD----KTIGVWQMVQ--RKLELI 728 (929)
Q Consensus 661 ~LaSGs----~DGtIrIWD~--~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D----gtIrIWDl~t--g~~~~~ 728 (929)
+++.|+ .++.|.+|++ .+++...+... |...+..++|+|||++|++++.+ +.|.+|++.. ++....
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 455554 4578999966 45554444444 67788889999999999998876 7999999875 554333
Q ss_pred EEe-ccCCCeEEeccCCCEEEEEe-cCCeEEEEeCCC--ceeee----c--c---------CCCeEEEEEe-CCE-EEEE
Q 002389 729 EVI-ATKEPIRKLDTYGKTIFAST-QGHRMKVIDSSR--TLKDI----Y--R---------SKGIKSMSVV-QGK-IYIG 787 (929)
Q Consensus 729 ~~~-~h~~~V~s~s~~g~~L~sgs-~Dg~V~IWDl~~--~~~~l----~--~---------~~~V~sla~s-dg~-llsg 787 (929)
... .+......+..+++++++++ .++.+.+|++.. ..... . . ...+.+++++ +|+ ++++
T Consensus 93 ~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~ 172 (361)
T 3scy_A 93 NTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD 172 (361)
T ss_dssp EEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred eEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence 332 23334454555888888776 578999999862 11111 0 0 1235778997 776 6555
Q ss_pred E-CCCcEEEEEccCCcc------ceec-ccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEE--
Q 002389 788 C-MDSSIQELAVSNNVE------REIK-APFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISI-- 855 (929)
Q Consensus 788 s-~Dg~I~iwDl~tg~~------~~i~-~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~--i~~-- 855 (929)
+ .++.+.+|++..... .... ............+..+.++|++.++...+..++.|.+||..++.. ...
T Consensus 173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence 4 478999999876432 1000 000111223456788999999987666665678999999887654 222
Q ss_pred -ecCCCCCeEEEEEecCCCEEEEEeC--CCcEEEEECC--CCc--EEEEEeCCCCeEEEEEc--CCEEEEEE-CCCcEEE
Q 002389 856 -APEKGTTIQAMAVVEDFIYLNYNSS--ASSLQIWLRG--TQQ--KVGRISAGSKITSLLTA--NDIVLCGT-ETGLIKG 925 (929)
Q Consensus 856 -l~~h~~~V~slafSpdg~~LaSgS~--DG~I~IWdl~--sg~--~i~tl~~h~~Vtsvs~d--g~~LaSgs-~DG~I~I 925 (929)
...+......++|+|||++|+++.. ++.|.+|++. +++ .+..+..+..+.+++|+ |++|++++ .++.|.+
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 2334456789999999999876665 4899999985 455 45666654446777765 78888887 6799999
Q ss_pred ee
Q 002389 926 WI 927 (929)
Q Consensus 926 Wd 927 (929)
|+
T Consensus 333 ~~ 334 (361)
T 3scy_A 333 FE 334 (361)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.68 E-value=6.8e-16 Score=187.90 Aligned_cols=274 Identities=6% Similarity=0.036 Sum_probs=183.1
Q ss_pred CEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC---cEEEEEEcCCCCEEEEEeCC---------CeEEE
Q 002389 651 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK---AVTSFSLFEPGESLLSGSAD---------KTIGV 717 (929)
Q Consensus 651 ~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~---~Vtslafspdg~~LaSgs~D---------gtIrI 717 (929)
.+.+++|+ ++.++..+.||+|++||..+++. ...+.+|.. .|.+++|+|||++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~--~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTS--TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCC--EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcE--EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 45678888 55444447899999999998865 455666664 49999999999999999874 78889
Q ss_pred EEccCCeEEEEEEe-ccCCCeE--EeccCCCEEEEEecCCeEEEEeCCC-ceeeec-c-CCC------------------
Q 002389 718 WQMVQRKLELIEVI-ATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIY-R-SKG------------------ 773 (929)
Q Consensus 718 WDl~tg~~~~~~~~-~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~-~-~~~------------------ 773 (929)
||+.+++....... .+...+. +|+|+|+.+++++. +.|++||... ....+. . ...
T Consensus 96 ~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred EECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99998875222111 2222233 58999999999886 7999999873 222222 1 222
Q ss_pred eEEEEEe-CCE-EEEEECCC----------------------------------cEEEEEccCCcc-ceecccccccccC
Q 002389 774 IKSMSVV-QGK-IYIGCMDS----------------------------------SIQELAVSNNVE-REIKAPFKSWRLQ 816 (929)
Q Consensus 774 V~sla~s-dg~-llsgs~Dg----------------------------------~I~iwDl~tg~~-~~i~~~~~~~~~~ 816 (929)
+.+++|+ ||+ +++++.++ .|++||+.++.. ..+..+ .....+
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~ 253 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP-DDPRMR 253 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC-CCGGGS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC-ccCCCc
Confidence 3789997 776 66665442 789999988763 222111 111123
Q ss_pred CCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEEecC-CCCCeE----EEEEecCCCEEEE--EeCCC----
Q 002389 817 SKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISIAPE-KGTTIQ----AMAVVEDFIYLNY--NSSAS---- 882 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~~i~~l~~-h~~~V~----slafSpdg~~LaS--gS~DG---- 882 (929)
...+..+.++|++.+++..+.. +..|++||..++........ +...+. .++|+|||+.|+. +..|+
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 5678899999999877655432 35899999999887665543 334443 7899999997764 45677
Q ss_pred --cEEEEE-CCCCcE--EEEEeC-CCCeEE---EEEcCCEEEEEECC---CcEEEeec
Q 002389 883 --SLQIWL-RGTQQK--VGRISA-GSKITS---LLTANDIVLCGTET---GLIKGWIP 928 (929)
Q Consensus 883 --~I~IWd-l~sg~~--i~tl~~-h~~Vts---vs~dg~~LaSgs~D---G~I~IWdi 928 (929)
.|++|| ..+++. ...+.. +..+.. ++++|+.|+..+.+ +.+++|++
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 577777 444441 444543 333543 44468888766555 78999974
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=8.5e-15 Score=161.74 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=170.0
Q ss_pred CCCCEEEEEEe-CCEEEEEEC---CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-
Q 002389 648 CSGAVTALIYY-KGLLCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMV- 721 (929)
Q Consensus 648 H~~~Vtsl~fs-~~~LaSGs~---DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl~- 721 (929)
+...+..++|+ ++.+++++. ++.|++||+.+++...+..+..|...+..++|+|+|++|++++ .+++|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 34667789999 555665554 6899999998776556666667888899999999999988887 78999999995
Q ss_pred CCeEEEEEEeccC--C--------Ce--EEeccCCCEEEEEecCCeEEEEeCC--Cceee-----eccCCCeEEEEEe-C
Q 002389 722 QRKLELIEVIATK--E--------PI--RKLDTYGKTIFASTQGHRMKVIDSS--RTLKD-----IYRSKGIKSMSVV-Q 781 (929)
Q Consensus 722 tg~~~~~~~~~h~--~--------~V--~s~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~-----l~~~~~V~sla~s-d 781 (929)
++.........+. . .+ ..++++++.+++...++.|.+|++. +.... ......+..++|+ +
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd 197 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD 197 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence 4443332222221 1 23 3578999955555567899999987 22221 1123467889998 7
Q ss_pred CE-EEE-EECCCcEEEEEccC--Cccceecccccccc---cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-C--C
Q 002389 782 GK-IYI-GCMDSSIQELAVSN--NVEREIKAPFKSWR---LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-K--P 851 (929)
Q Consensus 782 g~-lls-gs~Dg~I~iwDl~t--g~~~~i~~~~~~~~---~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~--~ 851 (929)
|+ +++ +..++.+.+|++.. +........ .... .....+..+.++|++.++......++.|.+|++.. + .
T Consensus 198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIV-KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCceEEeeee-eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 76 555 45688999999874 332211100 0000 01145788999999987644444678999999862 2 3
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEEEE--ECCCCcEE
Q 002389 852 QISIAPEKGTTIQAMAVVEDFIYLNYNSSA-SSLQIW--LRGTQQKV 895 (929)
Q Consensus 852 ~i~~l~~h~~~V~slafSpdg~~LaSgS~D-G~I~IW--dl~sg~~i 895 (929)
.+..+..+...+..++|+|||++|++++.+ +.|.+| |..+|+..
T Consensus 277 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 455566666778999999999998888754 899999 55667664
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.68 E-value=3e-15 Score=191.13 Aligned_cols=268 Identities=8% Similarity=0.017 Sum_probs=202.2
Q ss_pred CCCCCCEEEEEEeCC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 646 HKCSGAVTALIYYKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+|.+.|.++.|+++ ++++++.||+++||.+..... ....+..|. .+...+|+|||++|+++. ++.|.+||...+.
T Consensus 200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGK-DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSC-SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCC-cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE
Confidence 489999999999955 566788889999997653211 134555565 466779999999998875 9999999995544
Q ss_pred EEEEEEec-----------cCCCe--EEec-cCCCEEEEEecCCeEEEEeCCC-ceeeecc-CC-CeEEEEEeCCE-EEE
Q 002389 725 LELIEVIA-----------TKEPI--RKLD-TYGKTIFASTQGHRMKVIDSSR-TLKDIYR-SK-GIKSMSVVQGK-IYI 786 (929)
Q Consensus 725 ~~~~~~~~-----------h~~~V--~s~s-~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~-~~-~V~sla~sdg~-lls 786 (929)
.. .... +...+ .+|+ |+|+.+++++ ++.+.+|+... ....+.. .. .+..++|++|+ ++.
T Consensus 277 l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~ 353 (1045)
T 1k32_A 277 IE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIH 353 (1045)
T ss_dssp EE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEE
T ss_pred ee--eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEE
Confidence 32 2222 11123 3588 9999998887 78999999873 3333333 33 57788888555 777
Q ss_pred EECCCcEE-EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE
Q 002389 787 GCMDSSIQ-ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA 865 (929)
Q Consensus 787 gs~Dg~I~-iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~s 865 (929)
++.++.+. +||+.++....+ ..+...+..+.++|++.+++..+ .++.|++||+.++.......+|...+.+
T Consensus 354 ~s~~~~l~~~~d~~~~~~~~l-------~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTGKAEKF-------EENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp EETTEEEEEEEETTTCCEEEC-------CCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred EECCCceEEEEECCCCCceEe-------cCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCCceEEeccCCCCCccc
Confidence 77778888 889887654322 24567889999999998887665 6789999999999988777789999999
Q ss_pred EEEecCCCEEEEEeCCC----------cEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 866 MAVVEDFIYLNYNSSAS----------SLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 866 lafSpdg~~LaSgS~DG----------~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
++|+|||++|++++.++ .|++||+.+++ +..+..|. .+.+++|+ |+.|++++.++...+|+.
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 99999999999887654 89999999887 66666664 37777665 889999999888888863
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.64 E-value=3.3e-14 Score=155.31 Aligned_cols=240 Identities=8% Similarity=0.037 Sum_probs=164.0
Q ss_pred CCCCEEEEEEe-CC-EEEEEEC-CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEEcc
Q 002389 648 CSGAVTALIYY-KG-LLCSGFS-DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK---TIGVWQMV 721 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs~-DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dg---tIrIWDl~ 721 (929)
+...+ +++|+ ++ ++++++. ++.|.+||..+++. ....+..+..+..+++|+|+|++++++..++ .|.+||+.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 34556 99998 44 5665555 89999999998764 2455666777776699999999998555553 89999999
Q ss_pred CCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCe-EEEEeCCCc-------eeeeccCCCeEEEEEe-CCE-EEEEE-C
Q 002389 722 QRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHR-MKVIDSSRT-------LKDIYRSKGIKSMSVV-QGK-IYIGC-M 789 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~-V~IWDl~~~-------~~~l~~~~~V~sla~s-dg~-llsgs-~ 789 (929)
+++.......+....-..++++++++++++ .++. +.+|++... ...+........++++ +|+ +++++ .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred CCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence 887654333222222235789998766664 4477 999998731 1222335568899998 775 55544 6
Q ss_pred CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe--EEEecCC----CC--
Q 002389 790 DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAPEK----GT-- 861 (929)
Q Consensus 790 Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~--i~~l~~h----~~-- 861 (929)
++.|.+||+.+++..... ..+. ....+..+.++|++.++...+..++.|.+||..+++. +..+..+ ..
T Consensus 197 ~~~v~v~d~~~~~~~~~~---~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 197 GNSIGILETQNPENITLL---NAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp TTEEEEEECSSTTSCEEE---EEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred CCeEEEEECCCCccccee---eecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence 889999999887651100 1111 2356678999999987665554667899999998876 3333222 22
Q ss_pred -CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc
Q 002389 862 -TIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQ 893 (929)
Q Consensus 862 -~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~ 893 (929)
....++|+|||++|+.++ .++.|.+||+.+..
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 235689999999886655 56799999997643
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.64 E-value=1.2e-14 Score=158.04 Aligned_cols=238 Identities=10% Similarity=0.044 Sum_probs=166.2
Q ss_pred CEEEEEEe-CC-EE-EEEECCCeEEEEECCCCCeeEEEEec-cC----CCcEEEEEEcCCCCEEEEEe------------
Q 002389 651 AVTALIYY-KG-LL-CSGFSDGSIKMWDIKKQSAMLVWDVK-EH----RKAVTSFSLFEPGESLLSGS------------ 710 (929)
Q Consensus 651 ~Vtsl~fs-~~-~L-aSGs~DGtIrIWD~~~~~~~~i~~l~-gH----~~~Vtslafspdg~~LaSgs------------ 710 (929)
.+..++|+ ++ ++ ++++.++.|.+||+.+++. +..+. ++ ...+.+++|+|+|+++++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 47789998 44 54 5666789999999998764 34343 22 23677899999999988886
Q ss_pred CCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCce--eeeccCCCeEEEEEe-CCE-EEE
Q 002389 711 ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTL--KDIYRSKGIKSMSVV-QGK-IYI 786 (929)
Q Consensus 711 ~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~--~~l~~~~~V~sla~s-dg~-lls 786 (929)
.++.|.+||+.+++.......+....-..+++++++++++ ++.|.+||..... ..+........+.++ +|. ++.
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred cCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence 5799999999988755443332222223588999988888 6899999987322 222222111111333 333 332
Q ss_pred EEC-CC-----------------------cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeE
Q 002389 787 GCM-DS-----------------------SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNI 842 (929)
Q Consensus 787 gs~-Dg-----------------------~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI 842 (929)
.+. ++ .|.+||..+++.... ....+...+..+.++|++.+++.. ++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~---~~~v 262 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR-----EVRIMDVFYFSTAVNPAKTRAFGA---YNVL 262 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE-----EEEECSSCEEEEEECTTSSEEEEE---ESEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe-----ecCCCCCceeeEEECCCCCEEEEe---CCeE
Confidence 221 11 478999988765421 112344567789999998776654 5799
Q ss_pred EEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 843 KEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
.+||..+++....+..+ ..+.+++|+|||+++++++.++.|++||..+++.+..+..+
T Consensus 263 ~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 263 ESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99999998877666543 46789999999999999999999999999999999988865
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.63 E-value=1.4e-14 Score=176.98 Aligned_cols=264 Identities=13% Similarity=0.074 Sum_probs=184.3
Q ss_pred CCEEEEEEe-CC-EEEEEECCCeEEEEECCCC---CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 650 GAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQ---SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~---~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
..|.+++|+ ++ +|++++. +.|++||+.++ . ...+..|...+.+++|+|||++|++++ ++.|++||+.+++
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~---~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA---VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS---CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce---EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 348899999 44 7888776 99999999987 4 345678888999999999999999888 5699999999887
Q ss_pred EEEEEEeccCC------------------CeEEeccCCCEEEEEecCC--------------------------------
Q 002389 725 LELIEVIATKE------------------PIRKLDTYGKTIFASTQGH-------------------------------- 754 (929)
Q Consensus 725 ~~~~~~~~h~~------------------~V~s~s~~g~~L~sgs~Dg-------------------------------- 754 (929)
...... .+.. .-..|+++|++|++++.|+
T Consensus 184 ~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 184 QMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 543222 2222 2246899999999988765
Q ss_pred -eEEEEeCCC-ce-eeec----cCCCeEEEEEeCCE-EEEEEC-----CCcEEEEEccCCccceecccccccccCCC---
Q 002389 755 -RMKVIDSSR-TL-KDIY----RSKGIKSMSVVQGK-IYIGCM-----DSSIQELAVSNNVEREIKAPFKSWRLQSK--- 818 (929)
Q Consensus 755 -~V~IWDl~~-~~-~~l~----~~~~V~sla~sdg~-llsgs~-----Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~--- 818 (929)
.|.+||+.. .. ..+. ....+..++|+||+ +++++. +..|++||+.+++...+.. .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~~ 336 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH------ETSPTWV 336 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE------EECSSCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE------cCCCCcC
Confidence 788888764 32 2222 23347778887665 555443 5679999999876544321 1111
Q ss_pred -CeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCeEEEecCCCCCeEEE-EEecCCCEEEE-EeCCC--cEEEEECCC-
Q 002389 819 -PINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQISIAPEKGTTIQAM-AVVEDFIYLNY-NSSAS--SLQIWLRGT- 891 (929)
Q Consensus 819 -~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~i~~l~~h~~~V~sl-afSpdg~~LaS-gS~DG--~I~IWdl~s- 891 (929)
.+..+.++|++.+.++.+ .++.+++|..+ .+. ...+..|...|..+ .|+|||+.|+. ++.|+ .++||++..
T Consensus 337 ~~~~~~~~spdg~~~~~~~-~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSE-RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp CCCSCCEECTTSCEEEEEC-TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred CcCCceEECCCCeEEEEec-CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 345778899988655544 67767777654 334 67788888888887 59999998755 44455 899999764
Q ss_pred CcEEEEEeCCCCeEEEEEc--CCEEEEEECC----CcEEEee
Q 002389 892 QQKVGRISAGSKITSLLTA--NDIVLCGTET----GLIKGWI 927 (929)
Q Consensus 892 g~~i~tl~~h~~Vtsvs~d--g~~LaSgs~D----G~I~IWd 927 (929)
+.....+.....+.+++|+ |+.|+....+ +.+.+|+
T Consensus 415 g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 415 GGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp CCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred CCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence 5556667665557777765 6666654433 3567765
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.63 E-value=2.4e-14 Score=174.10 Aligned_cols=265 Identities=8% Similarity=0.047 Sum_probs=176.0
Q ss_pred EEEEEEeCCEEEEEECCCeEEEEECCCCCe--eEEEEeccC--------------CCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389 652 VTALIYYKGLLCSGFSDGSIKMWDIKKQSA--MLVWDVKEH--------------RKAVTSFSLFEPGESLLSGSADKTI 715 (929)
Q Consensus 652 Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~--~~i~~l~gH--------------~~~Vtslafspdg~~LaSgs~DgtI 715 (929)
+..+.|.++.+++++.|| | +||..+++. ..+...... ...|.+++|+|| +.++.+. |++|
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i 103 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGL 103 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEE
Confidence 344666666888888888 8 999998865 333221111 156999999999 6665554 6999
Q ss_pred EEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCC-----c-eeeec-cCCC-------------
Q 002389 716 GVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR-----T-LKDIY-RSKG------------- 773 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~-----~-~~~l~-~~~~------------- 773 (929)
++||+.+++.... ..+...+. +|+|+|+.++++ .++.|++||+.. . ...+. ....
T Consensus 104 ~~~d~~~~~~~~l--~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 104 VGFDMLARKVTYL--FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp EEEETTTTEEEEE--ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred EEEECCCCceEEc--cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 9999998865332 23333343 689999999885 789999999864 2 22222 2222
Q ss_pred --eEEEEEe-CCE-EEEEE---------------------------------CCCcEEEEEccCCccceecccccccccC
Q 002389 774 --IKSMSVV-QGK-IYIGC---------------------------------MDSSIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 774 --V~sla~s-dg~-llsgs---------------------------------~Dg~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
+.++.|+ ||+ +++++ .+..|++||+.++....+.. ...+
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~----~~~~ 256 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT----GEPK 256 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC----CSCT
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc----CCCC
Confidence 4788997 776 66665 34679999998876543321 1234
Q ss_pred CCCeEEEEEcCCceEEEEEecCC----CeEEEEECCCC-CeEEEec-CCCC---CeEEEEEec--CCCEEEEEeCCCcEE
Q 002389 817 SKPINSLVVYKDWLYSASSSVEG----SNIKEWRRHRK-PQISIAP-EKGT---TIQAMAVVE--DFIYLNYNSSASSLQ 885 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dD----gtI~IWDl~~~-~~i~~l~-~h~~---~V~slafSp--dg~~LaSgS~DG~I~ 885 (929)
...+..+.++|++..++..+.+. ..|++||..++ ....... .+.. .+.+++|+| ||+++++++.||.++
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 56789999999998766544232 38999999988 4333222 2222 246789999 999999999999999
Q ss_pred EEECC-CCcEEEEEeCCCC-eEE-EEEc--CCEEEEEE-CCC----cEEEee
Q 002389 886 IWLRG-TQQKVGRISAGSK-ITS-LLTA--NDIVLCGT-ETG----LIKGWI 927 (929)
Q Consensus 886 IWdl~-sg~~i~tl~~h~~-Vts-vs~d--g~~LaSgs-~DG----~I~IWd 927 (929)
+|.+. ++..+..+..|.. +.+ ++|+ |+.|+.++ .++ .|+.|+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 99876 6777888877643 665 5665 66665544 444 455555
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.62 E-value=4.1e-13 Score=147.31 Aligned_cols=232 Identities=9% Similarity=0.006 Sum_probs=167.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCeEEEEeC
Q 002389 690 HRKAVTSFSLFEPGESLLSGSA-------DKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMKVIDS 761 (929)
Q Consensus 690 H~~~Vtslafspdg~~LaSgs~-------DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V~IWDl 761 (929)
....+..++|+|+|+++++++. ++.|.+||..+++.......+....-..++++++.+++++ .++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999999887763 5789999999988655544433333346889999766654 4789999998
Q ss_pred CC--ceeeeccCC----------CeEEEEEe-CCE-EEEEE--CCCcEEEEEccCCccceecccccccccCCCCeEEEEE
Q 002389 762 SR--TLKDIYRSK----------GIKSMSVV-QGK-IYIGC--MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVV 825 (929)
Q Consensus 762 ~~--~~~~l~~~~----------~V~sla~s-dg~-llsgs--~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~ 825 (929)
.. ....+..+. .+.+++++ +|. +++++ .++.|.+||..+++..... ..+...+..+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~~~~~~~ 192 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI------QNTGKMSTGLAL 192 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE------CCCCTTCCCCEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe------cCCCCccceEEE
Confidence 73 223333221 26788897 554 66655 4788999999887654322 223445677888
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCCeEEEecC----CCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCcEEEEEeC
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE----KGTTIQAMAVVEDFIYLNYNSS-ASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~----h~~~V~slafSpdg~~LaSgS~-DG~I~IWdl~sg~~i~tl~~ 900 (929)
++++.+++..+ .++.|.+||..++.....+.. +...+..++|+|+|++++.++. ++.|.+||..+++.+..+..
T Consensus 193 s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 193 DSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99887666555 578999999999987766553 5557889999999998776664 59999999999999988887
Q ss_pred CCC-eEEEEEcCCEEEEEE-CCCcEEEeec
Q 002389 901 GSK-ITSLLTANDIVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 901 h~~-Vtsvs~dg~~LaSgs-~DG~I~IWdi 928 (929)
+.+ -..+.++|+.++.++ .++.|.+||.
T Consensus 272 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 272 PESLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp SSCCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 654 223445677665555 7999999985
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.62 E-value=6.1e-14 Score=178.99 Aligned_cols=228 Identities=11% Similarity=-0.013 Sum_probs=168.4
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeEEEEEEeccC-CCeEEeccCCCEEEEEecCCeEEEEeCCC-
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELIEVIATK-EPIRKLDTYGKTIFASTQGHRMKVIDSSR- 763 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~~~~~~~~h~-~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~- 763 (929)
+.+|.+.+.++.|+++ ..+++++.|+++++|.+.. +.... ....+. ....+|+++|+.++++ .++.|++||...
T Consensus 199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~-~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE-ECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce-EecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 3578888999999988 5667888899999998753 22111 222222 2355789999988887 589999999852
Q ss_pred ceeeeccC------------CCeEEEEEe--CCE-EEEEECCCcEEEEEccCCccceecccccccccCCC-CeEEEEEcC
Q 002389 764 TLKDIYRS------------KGIKSMSVV--QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSK-PINSLVVYK 827 (929)
Q Consensus 764 ~~~~l~~~------------~~V~sla~s--dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~-~I~sl~~~~ 827 (929)
....+... ..+.+++|+ +|+ +++++ ++.+.+|+..++....+ ..+.. .+..+.++
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-------PEPLRIRYVRRGGD- 346 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-------SCCSCEEEEEECSS-
T ss_pred EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc-------cCCCcceEEeeeEc-
Confidence 22222221 257888886 666 55555 88999999987654332 23344 78888899
Q ss_pred CceEEEEEecCCCeEE-EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeE
Q 002389 828 DWLYSASSSVEGSNIK-EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KIT 905 (929)
Q Consensus 828 d~i~~~s~S~dDgtI~-IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vt 905 (929)
++..++..+ +++.+. +||..++.... +.+|...+..++|+|||++|++++.++.|++||+.+++......+|. .|.
T Consensus 347 dg~~l~~~s-~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 347 TKVAFIHGT-REGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred CCCeEEEEE-CCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 887777666 467888 89998877554 44888899999999999999999999999999999999888776663 467
Q ss_pred EEEE--cCCEEEEEECCC----------cEEEeec
Q 002389 906 SLLT--ANDIVLCGTETG----------LIKGWIP 928 (929)
Q Consensus 906 svs~--dg~~LaSgs~DG----------~I~IWdi 928 (929)
+++| ||++|++++.++ .|++||+
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred ceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 7666 478888887654 8999985
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.61 E-value=2.2e-14 Score=151.94 Aligned_cols=224 Identities=8% Similarity=-0.062 Sum_probs=158.3
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCC-CCeeEEEEeccC-CCcEEEEEEcCCCCEEEEEe--CCCeEEEEEc
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKK-QSAMLVWDVKEH-RKAVTSFSLFEPGESLLSGS--ADKTIGVWQM 720 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~-~~~~~i~~l~gH-~~~Vtslafspdg~~LaSgs--~DgtIrIWDl 720 (929)
+|.+.|.+++|+ ++ +|++++ ++.|++||+.+ ++. .....+| ...|.+++|+|+|++|++++ .++..++|.+
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP--EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC--EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc--eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 478899999999 44 777776 88999999998 754 3444455 47889999999999999998 3455556554
Q ss_pred --cCCeEEEEEEeccCCCeE--EeccCCCEEE-EEecCCeEEEEeCC---Cceeeecc-CCCeEEEEEe-CCE-EEEEE-
Q 002389 721 --VQRKLELIEVIATKEPIR--KLDTYGKTIF-ASTQGHRMKVIDSS---RTLKDIYR-SKGIKSMSVV-QGK-IYIGC- 788 (929)
Q Consensus 721 --~tg~~~~~~~~~h~~~V~--s~s~~g~~L~-sgs~Dg~V~IWDl~---~~~~~l~~-~~~V~sla~s-dg~-llsgs- 788 (929)
.++.. .. ......+. .|+++++.++ +++.++.+.+|+++ +....+.. ...+.++.|+ +|. +++++
T Consensus 116 ~~~~~~~--~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 116 PSTGGTP--RL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS 192 (297)
T ss_dssp ETTCCCC--EE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred ECCCCce--EE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec
Confidence 44442 12 22222344 5789999877 67789999999864 23333333 4568999997 665 55555
Q ss_pred CCCcEEEEEccC-CccceecccccccccCCCCeEEEEEcCCceEEEEEecCC----------CeEEEEECCCCCeE--EE
Q 002389 789 MDSSIQELAVSN-NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----------SNIKEWRRHRKPQI--SI 855 (929)
Q Consensus 789 ~Dg~I~iwDl~t-g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD----------gtI~IWDl~~~~~i--~~ 855 (929)
.++.+.+|++.. +... ..+..+...+..+.++|++.+++..+.++ +.|.+||..++... ..
T Consensus 193 ~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 193 RTGQMQIWRVRVDGSSV------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TTSSCEEEEEETTSSCE------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCCccEEEECCCCCCc------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 589999998863 2221 12234456788899999988766555332 56999999887753 34
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCC
Q 002389 856 APEKGTTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 856 l~~h~~~V~slafSpdg~~LaSgS~DG 882 (929)
..+|...+..++|+|||++|++++.|.
T Consensus 267 ~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCcccccceECCCCCEEEEEEecc
Confidence 447888899999999999998887654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=176.61 Aligned_cols=270 Identities=8% Similarity=-0.003 Sum_probs=179.8
Q ss_pred EEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEEc
Q 002389 654 ALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK---AVTSFSLFEPGESLLSGSA---------DKTIGVWQM 720 (929)
Q Consensus 654 sl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~---~Vtslafspdg~~LaSgs~---------DgtIrIWDl 720 (929)
+++|+ ++.++..+.||+|++||..+++. ...+.+|.. .|.+++|||||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQS--YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCE--EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcE--EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 56787 55666667899999999999865 344444543 4899999999999998876 799999999
Q ss_pred cCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC-ceeeecc-C--C-----------------CeEEEEE
Q 002389 721 VQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR-S--K-----------------GIKSMSV 779 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~-~--~-----------------~V~sla~ 779 (929)
.+++............-.+|+|+|+.++++. ++.|++||... ....+.. . . ...+++|
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 9887511011111112246899999999885 78999999863 2222221 1 1 1147899
Q ss_pred e-CCE-EEEEECCC----------------------------------cEEEEEccCCccc---eecccccccccCCCCe
Q 002389 780 V-QGK-IYIGCMDS----------------------------------SIQELAVSNNVER---EIKAPFKSWRLQSKPI 820 (929)
Q Consensus 780 s-dg~-llsgs~Dg----------------------------------~I~iwDl~tg~~~---~i~~~~~~~~~~~~~I 820 (929)
+ ||+ +++++.|. .+++||+.++... .+..+ ..+..+...+
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~ 255 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP-AMIASSDYYF 255 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC-HHHHTSCEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC-ccCCCCcceE
Confidence 8 776 66666442 7889999886542 22111 1233567788
Q ss_pred EEEEEcCCceEEEEEecC-C--CeEEEEE----CCCCCeEEEe----cCCCCCeE-----EEEEecCCCEEEE--EeCCC
Q 002389 821 NSLVVYKDWLYSASSSVE-G--SNIKEWR----RHRKPQISIA----PEKGTTIQ-----AMAVVEDFIYLNY--NSSAS 882 (929)
Q Consensus 821 ~sl~~~~d~i~~~s~S~d-D--gtI~IWD----l~~~~~i~~l----~~h~~~V~-----slafSpdg~~LaS--gS~DG 882 (929)
..+.++|++.+++..... + ..|.+|| ..++...... .+|...+. .+.|+|||+.++. +..+|
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 999999998766554322 2 3588899 7777655444 46777776 8899999996543 44555
Q ss_pred --cEEEEECCCCcEEEEEeCCC-CeEEEE-EcCCEEEEEECC-----CcEEEeec
Q 002389 883 --SLQIWLRGTQQKVGRISAGS-KITSLL-TANDIVLCGTET-----GLIKGWIP 928 (929)
Q Consensus 883 --~I~IWdl~sg~~i~tl~~h~-~Vtsvs-~dg~~LaSgs~D-----G~I~IWdi 928 (929)
.|++||..+++ ...+..+. .|..+. ++++.|+..+.+ +.+++|.+
T Consensus 336 ~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 336 YKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp CEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred ceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEE
Confidence 56667777766 44555443 365533 367766666554 88899863
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.60 E-value=1.3e-13 Score=159.21 Aligned_cols=280 Identities=10% Similarity=0.081 Sum_probs=179.5
Q ss_pred CCCEEEEEEe--CCEEEEEECCCeEEEEECCCCCe--------eEEEE-----eccCCCcEEEEEEcCCCCEEE----EE
Q 002389 649 SGAVTALIYY--KGLLCSGFSDGSIKMWDIKKQSA--------MLVWD-----VKEHRKAVTSFSLFEPGESLL----SG 709 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~~--------~~i~~-----l~gH~~~Vtslafspdg~~La----Sg 709 (929)
...++.++++ ++++++|+.|| ++||+...... ..+.. .-.|.+.|++++|+|+|++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4467888888 56999999998 89987531100 00111 124667899999999999999 88
Q ss_pred eCCCeEEEEEccCC--------eEE--EEEEeccCCCeEE--eccC-CCEEEEEecCCeEEEEeCCCceee--e-ccCCC
Q 002389 710 SADKTIGVWQMVQR--------KLE--LIEVIATKEPIRK--LDTY-GKTIFASTQGHRMKVIDSSRTLKD--I-YRSKG 773 (929)
Q Consensus 710 s~DgtIrIWDl~tg--------~~~--~~~~~~h~~~V~s--~s~~-g~~L~sgs~Dg~V~IWDl~~~~~~--l-~~~~~ 773 (929)
+.|++|++||+.++ +.. .....+|...|.+ |+++ +..+++++.||+|++||++..... . .+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 99999999998764 111 2223357888886 5565 678999999999999999854322 1 23457
Q ss_pred eEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC------eEEEE
Q 002389 774 IKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS------NIKEW 845 (929)
Q Consensus 774 V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg------tI~IW 845 (929)
|.+++|+ +|+ +++|+.||.|++||.+......+..+...-..|...+.++.++++..++++++..+| .+++|
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 9999998 665 889999999999999832222221111110122347899999999988877765553 48999
Q ss_pred ECCCCC-----eEEEec-------CCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC-cEE--EEEe----------
Q 002389 846 RRHRKP-----QISIAP-------EKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQ-QKV--GRIS---------- 899 (929)
Q Consensus 846 Dl~~~~-----~i~~l~-------~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg-~~i--~tl~---------- 899 (929)
++.... ....+. +...+-..+.+-++.+++++++ ..+.|.|...... ... ..+.
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~ 354 (434)
T 2oit_A 275 LLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVT 354 (434)
T ss_dssp ECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCBC
T ss_pred EeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccCC
Confidence 986542 222221 2222333344447777766555 4556777764321 111 1111
Q ss_pred CC---CCeEEEEEc----C-------------CEEEEEECCCcEEEeecC
Q 002389 900 AG---SKITSLLTA----N-------------DIVLCGTETGLIKGWIPL 929 (929)
Q Consensus 900 ~h---~~Vtsvs~d----g-------------~~LaSgs~DG~I~IWdil 929 (929)
.. ....++++| . -.|.+-+.||.+..|.++
T Consensus 355 ~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~ 404 (434)
T 2oit_A 355 DKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMI 404 (434)
T ss_dssp TTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEE
T ss_pred CCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEE
Confidence 00 113444443 1 278889999999999763
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.58 E-value=3.8e-14 Score=168.70 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=160.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCCeEEEEEEeccC-CCeEE--eccCCCEEEEEec---CCeEEE--Ee
Q 002389 690 HRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQRKLELIEVIATK-EPIRK--LDTYGKTIFASTQ---GHRMKV--ID 760 (929)
Q Consensus 690 H~~~Vtslafspdg~~LaSgs~-DgtIrIWDl~tg~~~~~~~~~h~-~~V~s--~s~~g~~L~sgs~---Dg~V~I--WD 760 (929)
+..+|++++|+|||++|++++. ||+++||++.+++.. ....+. ..+.. |+|+ +.+++++. +....+ ++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~--~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV--KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE--ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE--eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 3568999999999999999887 999999999777542 223333 34554 5666 55665554 344455 45
Q ss_pred C--CCceeeeccCCCeEEEEEe-CC--EEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 761 S--SRTLKDIYRSKGIKSMSVV-QG--KIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 761 l--~~~~~~l~~~~~V~sla~s-dg--~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
. .+....+.........+++ +| .+++.+.++.+.+||+.+++...+. ..+. .++.++|++.+++..
T Consensus 97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~------~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA------RLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE------EESS---CEEEEEEETTEEEEE
T ss_pred ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee------cCCC---ceEEECCCCCEEEEE
Confidence 5 4444444444445555665 44 4566666666679999887654432 1111 688899999887755
Q ss_pred ecC--C-CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCCCC-eEE---
Q 002389 836 SVE--G-SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS--SLQIWLRGTQQKVGRISAGSK-ITS--- 906 (929)
Q Consensus 836 S~d--D-gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG--~I~IWdl~sg~~i~tl~~h~~-Vts--- 906 (929)
+.+ + +.|++||..++... .+.+|...+..++|||||++|++++.+| .|++||..+++.. .+..|.. +.+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 532 1 57999999888755 5678888899999999999999888898 8999999999887 6666533 333
Q ss_pred -------EEEcCCEEEEEECCCcEEEeec
Q 002389 907 -------LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 907 -------vs~dg~~LaSgs~DG~I~IWdi 928 (929)
+++||.++++++.||++++|++
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4456889999999999999974
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.58 E-value=1.1e-12 Score=145.81 Aligned_cols=259 Identities=12% Similarity=0.140 Sum_probs=172.6
Q ss_pred CCCCEEEEEEe-CC-EEEEEECC----CeEEEEECCC--CCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 002389 648 CSGAVTALIYY-KG-LLCSGFSD----GSIKMWDIKK--QSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVW 718 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs~D----GtIrIWD~~~--~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIW 718 (929)
|...+..++|+ ++ +|++++.+ |.|.+|++.. ++...+.....+......+++ ++++|++++ .+++|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 46677889999 34 78888876 8999998875 444445555556667888888 888877665 68899999
Q ss_pred EccCCeEEE----EEE-ecc--------CCCe--EEeccCCCEEEEEec-CCeEEEEeCCCce----------------e
Q 002389 719 QMVQRKLEL----IEV-IAT--------KEPI--RKLDTYGKTIFASTQ-GHRMKVIDSSRTL----------------K 766 (929)
Q Consensus 719 Dl~tg~~~~----~~~-~~h--------~~~V--~s~s~~g~~L~sgs~-Dg~V~IWDl~~~~----------------~ 766 (929)
++....... ... .+. ...+ ..++++++++++++. ++.|.+|+++... .
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997532111 001 110 1112 368899997776664 7899999877321 1
Q ss_pred eeccCCCeEEEEEe-CCE-EEEEE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC-CCeE
Q 002389 767 DIYRSKGIKSMSVV-QGK-IYIGC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE-GSNI 842 (929)
Q Consensus 767 ~l~~~~~V~sla~s-dg~-llsgs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d-DgtI 842 (929)
..........++|+ +|+ +++++ .++.|.+|++.++....+... .....+......+.++|++.++...... ++.|
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV-AADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE-ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE-ecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 12234568899998 776 66666 689999999987654332110 1112233456799999999877655545 6899
Q ss_pred EEEECC--CCC--eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEE--CCCCcEEEEEeC-C-CCeEEEEEc
Q 002389 843 KEWRRH--RKP--QISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWL--RGTQQKVGRISA-G-SKITSLLTA 910 (929)
Q Consensus 843 ~IWDl~--~~~--~i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IWd--l~sg~~i~tl~~-h-~~Vtsvs~d 910 (929)
.+|+++ ++. .+..... ...+..++|+|||++|++++ .++.|.+|+ ..+|+....... + ..++|+.|.
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999985 444 3333433 55788999999999998887 679999965 556765433211 1 347787763
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=1.2e-12 Score=146.65 Aligned_cols=263 Identities=11% Similarity=0.070 Sum_probs=171.8
Q ss_pred EEEEEECC--CeEEEEEC--CCCCeeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CCeEEEEEEec-c
Q 002389 661 LLCSGFSD--GSIKMWDI--KKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV-QRKLELIEVIA-T 733 (929)
Q Consensus 661 ~LaSGs~D--GtIrIWD~--~~~~~~~i~~l~-gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~-tg~~~~~~~~~-h 733 (929)
+++.|+.. +.|.+|++ .+++...+.... ++...+..++|+|+|++|++++.+ .|.+||+. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 57888765 455433333321 234568889999999999999888 99999997 77654322211 1
Q ss_pred CCCe-EEeccCCCE--EEEEe-------------cCCeEEEEeCC--Ccee-eec-----cCCCeEEEEEe-CCE-EEEE
Q 002389 734 KEPI-RKLDTYGKT--IFAST-------------QGHRMKVIDSS--RTLK-DIY-----RSKGIKSMSVV-QGK-IYIG 787 (929)
Q Consensus 734 ~~~V-~s~s~~g~~--L~sgs-------------~Dg~V~IWDl~--~~~~-~l~-----~~~~V~sla~s-dg~-llsg 787 (929)
..+. .++++++++ ++++. .++.+.+|++. +... .+. ....+.+++|+ +|+ ++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 2221 257888985 44443 68899999986 2221 222 24568899998 776 6555
Q ss_pred E-CCCcEEEEEcc-CCccceecccccccc--cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCeE---E---E
Q 002389 788 C-MDSSIQELAVS-NNVEREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQI---S---I 855 (929)
Q Consensus 788 s-~Dg~I~iwDl~-tg~~~~i~~~~~~~~--~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~--~~~~i---~---~ 855 (929)
. .++.|++||+. +++...+. ... .++..+..+.++|++.++...+..+++|.+|+.+ ++... . .
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~----~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVG----SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEE----EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred cCCCCEEEEEEECCCCCEEEee----eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 5 36799999998 66543221 111 1355688999999998776666567899999764 45532 1 1
Q ss_pred ec----CCCC------CeEEEE-EecCCCEEEEEeCC-C-----cEEEEECC-CCcEEE---EEeCC-CCeE--EEEE--
Q 002389 856 AP----EKGT------TIQAMA-VVEDFIYLNYNSSA-S-----SLQIWLRG-TQQKVG---RISAG-SKIT--SLLT-- 909 (929)
Q Consensus 856 l~----~h~~------~V~sla-fSpdg~~LaSgS~D-G-----~I~IWdl~-sg~~i~---tl~~h-~~Vt--svs~-- 909 (929)
+. +|.. .+..++ |+|||++|++++.+ + .|.+|++. +++... ....+ ..+. .+++
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~ 318 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence 21 1222 588999 99999998776543 2 89999986 666543 23333 1222 3667
Q ss_pred -cCCEEEEEECC-CcEEEeec
Q 002389 910 -ANDIVLCGTET-GLIKGWIP 928 (929)
Q Consensus 910 -dg~~LaSgs~D-G~I~IWdi 928 (929)
+|++|++++.+ ++|++|++
T Consensus 319 ~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 319 WSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEE
T ss_pred cCCCEEEEEEcCCCeEEEEEE
Confidence 78999998875 89999974
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.58 E-value=2.4e-14 Score=165.31 Aligned_cols=225 Identities=9% Similarity=0.034 Sum_probs=151.8
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEE
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIF 748 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~ 748 (929)
+.+++|+.... .+...++.+++++++.++++|+.|+ +++|+...-.. ..... .+...+
T Consensus 23 ~~vri~~~~~~---------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~---~~~~~--------~~~~~~- 80 (434)
T 2oit_A 23 KKVRIFDSPEE---------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLI---QNKPG--------DDPNKI- 80 (434)
T ss_dssp CEEECSCCCSS---------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCC---CCCTT--------CCTTCE-
T ss_pred eeEEecCCccc---------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhh---hcccc--------cCcccc-
Confidence 56888875421 1234578899999999999999888 89988643110 00000 000000
Q ss_pred EEecCCeEEEEeCCCceeeeccCCCeEEEEEe-CCE-EE----EEECCCcEEEEEccCCc-----cceecccccccccCC
Q 002389 749 ASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IY----IGCMDSSIQELAVSNNV-----EREIKAPFKSWRLQS 817 (929)
Q Consensus 749 sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~-ll----sgs~Dg~I~iwDl~tg~-----~~~i~~~~~~~~~~~ 817 (929)
... .....+.....|.+++|+ +|+ ++ +|+.|+.|++||+.++. ........+.+.+|.
T Consensus 81 ----------~~~-~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 149 (434)
T 2oit_A 81 ----------VDK-VQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG 149 (434)
T ss_dssp ----------EEC-CCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG
T ss_pred ----------ccc-CccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC
Confidence 000 000112234568888887 665 55 56678999999987641 100000124456688
Q ss_pred CCeEEEEEcCC-ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 002389 818 KPINSLVVYKD-WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 896 (929)
Q Consensus 818 ~~I~sl~~~~d-~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~ 896 (929)
..|.++.++|+ +.++++.+ .||+|++||++++.......+|...|++++|+|+|++|++|+.||+|++||.+ ++...
T Consensus 150 ~~V~~v~~~p~~~~~las~s-~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCL-ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEE-TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred CceEEEEECCCCCCEEEEEE-CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 99999999997 56666665 78999999999887666667788999999999999999999999999999998 66666
Q ss_pred EEeCC----C----CeEEEEEcCC--EE-EEEECCCc------EEEeec
Q 002389 897 RISAG----S----KITSLLTAND--IV-LCGTETGL------IKGWIP 928 (929)
Q Consensus 897 tl~~h----~----~Vtsvs~dg~--~L-aSgs~DG~------I~IWdi 928 (929)
.+..| . .|.+++|+++ ++ ++++.||. +++|++
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 66544 1 4888999844 33 23555544 888875
No 159
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.55 E-value=2.1e-13 Score=165.87 Aligned_cols=261 Identities=10% Similarity=-0.034 Sum_probs=171.0
Q ss_pred CEEEEEEe-CC-EEEEEECC---------CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 651 AVTALIYY-KG-LLCSGFSD---------GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 651 ~Vtsl~fs-~~-~LaSGs~D---------GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
.|.+++|+ ++ +|++++.+ +.|++||+.+++...+....+|...+.+++|+|||+.|++++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 59999999 44 78888875 7888999998865333333456666899999999999999885 8999999
Q ss_pred ccCCeEEEEEEeccCC-------------------CeEEeccCCCEEEEEecCC--------------------------
Q 002389 720 MVQRKLELIEVIATKE-------------------PIRKLDTYGKTIFASTQGH-------------------------- 754 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~-------------------~V~s~s~~g~~L~sgs~Dg-------------------------- 754 (929)
+.+++.......+... .-..|+|+|+.|++++.++
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 9988754333222221 1246899999999987553
Q ss_pred --------eEEEEeCCCce--eeecc-------CCCeEEEEEe-CCEEE-EEEC----CCcEEEEEccCCccceeccccc
Q 002389 755 --------RMKVIDSSRTL--KDIYR-------SKGIKSMSVV-QGKIY-IGCM----DSSIQELAVSNNVEREIKAPFK 811 (929)
Q Consensus 755 --------~V~IWDl~~~~--~~l~~-------~~~V~sla~s-dg~ll-sgs~----Dg~I~iwDl~tg~~~~i~~~~~ 811 (929)
.|++||+.... ..+.. ...+..++|+ ||+++ +.+. +..|++||+.+++...+..
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~--- 297 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE--- 297 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE---
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE---
Confidence 79999987432 33332 2357889998 88844 4432 3579999998876543321
Q ss_pred ccccCCCCe----EEEEEcCCceEEEEE-ecCCC------eEEEEE-CCCCC--eEEEecCCCCCeEE-EEEecCCCEEE
Q 002389 812 SWRLQSKPI----NSLVVYKDWLYSASS-SVEGS------NIKEWR-RHRKP--QISIAPEKGTTIQA-MAVVEDFIYLN 876 (929)
Q Consensus 812 ~~~~~~~~I----~sl~~~~d~i~~~s~-S~dDg------tI~IWD-l~~~~--~i~~l~~h~~~V~s-lafSpdg~~La 876 (929)
..+...+ ..+.++|++..++.. +..++ .|.+|| ..++. ....+..+...+.. ++|+|||++|+
T Consensus 298 --~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~ 375 (723)
T 1xfd_A 298 --DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (723)
T ss_dssp --EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred --eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEE
Confidence 0111222 367889988755433 33555 577777 44444 13444433444554 69999999997
Q ss_pred EEeCC---CcEEEEECCCC--cEEEEEeC---C-CCeEEEEEc--CCEEEEE
Q 002389 877 YNSSA---SSLQIWLRGTQ--QKVGRISA---G-SKITSLLTA--NDIVLCG 917 (929)
Q Consensus 877 SgS~D---G~I~IWdl~sg--~~i~tl~~---h-~~Vtsvs~d--g~~LaSg 917 (929)
..+.+ +.+++|++... .....+.. | ..+..++|+ |+.++..
T Consensus 376 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 376 FLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 76655 78999997542 23334443 3 336666654 6666643
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.48 E-value=1.6e-12 Score=159.67 Aligned_cols=271 Identities=9% Similarity=0.013 Sum_probs=172.2
Q ss_pred CCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCc-----EEEEEEcCCCCEEEEEeCC---------
Q 002389 649 SGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA-----VTSFSLFEPGESLLSGSAD--------- 712 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~-----Vtslafspdg~~LaSgs~D--------- 712 (929)
.....++.|+ ++ +++++ ||+|++||+.+++. ...+.+|... ..+++|||||++|+.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 3345688998 55 56665 99999999999875 3456666533 3457899999999998876
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCC-ceeeecc--CC-Ce------------
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR-TLKDIYR--SK-GI------------ 774 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~~--~~-~V------------ 774 (929)
+.+.+||+.+++... ...+...+. +|+|+|+.|+.+ .++.|++||... ....+.. .. .+
T Consensus 92 ~~~~~~d~~~~~~~~--l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT--EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEEETTTTEECC--SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred eEEEEEECCCCcEEE--cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 566799999987532 233444454 589999999888 468999999863 2222221 11 11
Q ss_pred -----EEEEEe-CCE-EEEEECCC------------------------------------cEEEEEccC---C---ccce
Q 002389 775 -----KSMSVV-QGK-IYIGCMDS------------------------------------SIQELAVSN---N---VERE 805 (929)
Q Consensus 775 -----~sla~s-dg~-llsgs~Dg------------------------------------~I~iwDl~t---g---~~~~ 805 (929)
..+.|+ ||+ |+.++.|. .+++||+.+ + ....
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 247787 776 55554221 467777776 5 2222
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCC----eE--EE--ecCCCCCeE-----EEEEe
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKP----QI--SI--APEKGTTIQ-----AMAVV 869 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~----~i--~~--l~~h~~~V~-----slafS 869 (929)
+..+. .+.++...+..+.++|++...+..... +..|.+||..++. +. .. -.+|..+|. ..+|+
T Consensus 249 l~~~~-~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 249 ITAPA-SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp ECCCH-HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred ecCCc-cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 21110 011355668888999998865554422 2479999988876 11 11 134665554 78999
Q ss_pred cCCCEEE-EEeC-C--CcEEEEECCCCcEEEEEeCCCCeEEE-EEcCCEEEE-EEC----CCcEEEee
Q 002389 870 EDFIYLN-YNSS-A--SSLQIWLRGTQQKVGRISAGSKITSL-LTANDIVLC-GTE----TGLIKGWI 927 (929)
Q Consensus 870 pdg~~La-SgS~-D--G~I~IWdl~sg~~i~tl~~h~~Vtsv-s~dg~~LaS-gs~----DG~I~IWd 927 (929)
|||+.++ ..+. + ..|++||..+++......++..|..+ .||++.|+. ++. .+..+||.
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~ 395 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYK 395 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEE
Confidence 9999877 6653 3 46888888876655433343446664 488775554 433 24455553
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.47 E-value=1e-11 Score=135.68 Aligned_cols=227 Identities=9% Similarity=0.064 Sum_probs=150.6
Q ss_pred CEEEEEEe-CC-EE-EEEECCCeEEEEECCCCCeeEEEEecc-C-----CCcEEEEEEcCCCCEEEEEeCC---------
Q 002389 651 AVTALIYY-KG-LL-CSGFSDGSIKMWDIKKQSAMLVWDVKE-H-----RKAVTSFSLFEPGESLLSGSAD--------- 712 (929)
Q Consensus 651 ~Vtsl~fs-~~-~L-aSGs~DGtIrIWD~~~~~~~~i~~l~g-H-----~~~Vtslafspdg~~LaSgs~D--------- 712 (929)
.+..++|+ ++ ++ +++..++.|.+||..+++. +..+.. + ...+.+++|+|+|+++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 56788998 44 44 5666789999999998754 444432 2 2337889999999999988865
Q ss_pred ---CeEEEEEccCCeEEE-EEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCC-c-eeeeccCC------------
Q 002389 713 ---KTIGVWQMVQRKLEL-IEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSR-T-LKDIYRSK------------ 772 (929)
Q Consensus 713 ---gtIrIWDl~tg~~~~-~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~-~-~~~l~~~~------------ 772 (929)
+.|.+||+.+++... .....+...+. +++++++ +++++ +.|.+||... . ...+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccce
Confidence 999999998854221 11112222333 4788998 66653 4499999863 2 22222111
Q ss_pred -------------CeEEEEEe-CCE-----------EE-EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEc
Q 002389 773 -------------GIKSMSVV-QGK-----------IY-IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVY 826 (929)
Q Consensus 773 -------------~V~sla~s-dg~-----------ll-sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~ 826 (929)
....+++. ++. ++ ....++.+.+|+... ....+..+.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~s 263 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD---------------LTELYFTGLRS 263 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE---------------CSSCEEEEEEC
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc---------------CCCcceeeEec
Confidence 12233333 110 11 122234444444321 34567788899
Q ss_pred C-CceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q 002389 827 K-DWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 827 ~-d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h 901 (929)
| ++.++... ++.|.+||..+++....+..+ ..+.+++|+|||++|++++.++.|++||..+++.+..+..+
T Consensus 264 p~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 264 PKDPNQIYGV---LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSCTTEEEEE---ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCCCEEEEE---cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 9 87765544 579999999998877666533 45779999999999988888999999999999999988765
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.45 E-value=1.1e-11 Score=138.29 Aligned_cols=271 Identities=10% Similarity=0.010 Sum_probs=170.6
Q ss_pred CCCCCEEE-----EEEe-CC-EEEEEEC-CC--eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 002389 647 KCSGAVTA-----LIYY-KG-LLCSGFS-DG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIG 716 (929)
Q Consensus 647 gH~~~Vts-----l~fs-~~-~LaSGs~-DG--tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIr 716 (929)
.|.+.+.. .+|+ ++ +|+.++. +| .|.+||..+++. .....+|...+....|+|||+.|+.++.++.|+
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~ 105 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA--TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLM 105 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE--EECCCSSCBCSSSCEECTTSSEEEEEETTTEEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce--EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEE
Confidence 34445555 7888 44 7887777 67 488889988753 444456666666778999999999999999999
Q ss_pred EEEccCCeEEEEEEeccCCCeE----EeccCCCEEEEEe----------------------cCCeEEEEeCCC-ceeeec
Q 002389 717 VWQMVQRKLELIEVIATKEPIR----KLDTYGKTIFAST----------------------QGHRMKVIDSSR-TLKDIY 769 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~----s~s~~g~~L~sgs----------------------~Dg~V~IWDl~~-~~~~l~ 769 (929)
+||+.+++...... .+...+. .+++++..++... .++.|.+||+.. ....+.
T Consensus 106 ~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 106 RVDLATLEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EEECCCCcceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 99999987544332 2222221 2467888776432 346899999873 333333
Q ss_pred -cCCCeEEEEEe--CCE-EEEEECC------CcEEEEEccCCccceecccccccccCC-CCeEEEEEcCCceEEEEEec-
Q 002389 770 -RSKGIKSMSVV--QGK-IYIGCMD------SSIQELAVSNNVEREIKAPFKSWRLQS-KPINSLVVYKDWLYSASSSV- 837 (929)
Q Consensus 770 -~~~~V~sla~s--dg~-llsgs~D------g~I~iwDl~tg~~~~i~~~~~~~~~~~-~~I~sl~~~~d~i~~~s~S~- 837 (929)
....+..+.|+ +|+ ++....+ ..|.++|..++....+. .... ..+....++|++..++..+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK------THAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC------CCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee------eCCCCcccccceECCCCCEEEEEecC
Confidence 34557888886 466 5555442 37888887765433321 1111 35677889999875433332
Q ss_pred CCC---eEEEEECCCCCeEE--EecCCCCC---eEEEEEecCCCEEEEE---------eCCCcEEEEECCCCcEEEEEeC
Q 002389 838 EGS---NIKEWRRHRKPQIS--IAPEKGTT---IQAMAVVEDFIYLNYN---------SSASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 838 dDg---tI~IWDl~~~~~i~--~l~~h~~~---V~slafSpdg~~LaSg---------S~DG~I~IWdl~sg~~i~tl~~ 900 (929)
.++ .|++||+.+++... ...++... .....|+|||+.|+.. ..+..|++||..+++. ..+..
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~ 337 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVAR 337 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEE
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEecc
Confidence 222 39999999887432 33321110 1123799999988754 4567899999988765 34443
Q ss_pred C-C-----------CeEEEEE--cCCEEEEEE-CCCcEEEee
Q 002389 901 G-S-----------KITSLLT--ANDIVLCGT-ETGLIKGWI 927 (929)
Q Consensus 901 h-~-----------~Vtsvs~--dg~~LaSgs-~DG~I~IWd 927 (929)
+ . .+.+++| ||+.|+.++ .+|...+|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 4 2 2555454 577666555 578888875
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.45 E-value=1.3e-11 Score=138.00 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=157.9
Q ss_pred CCCCEEEEEEe-CC-EEEEEECCCeEEEEECC-CCCeeEEEEeccCCCcEEEEEEcCCCCE--EEEEe------------
Q 002389 648 CSGAVTALIYY-KG-LLCSGFSDGSIKMWDIK-KQSAMLVWDVKEHRKAVTSFSLFEPGES--LLSGS------------ 710 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~-~~~~~~i~~l~gH~~~Vtslafspdg~~--LaSgs------------ 710 (929)
+...+..++|+ ++ +|++++.+ .|.+|++. +++...+.....+ +.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34567889998 44 78888888 99999997 6643222222212 23556899999995 55553
Q ss_pred -CCCeEEEEEcc-CCeEEEEEEe---ccCCCeE--EeccCCCEEEEEec-CCeEEEEeCC--Ccee---eec---cCCCe
Q 002389 711 -ADKTIGVWQMV-QRKLELIEVI---ATKEPIR--KLDTYGKTIFASTQ-GHRMKVIDSS--RTLK---DIY---RSKGI 774 (929)
Q Consensus 711 -~DgtIrIWDl~-tg~~~~~~~~---~h~~~V~--s~s~~g~~L~sgs~-Dg~V~IWDl~--~~~~---~l~---~~~~V 774 (929)
.+|++.+|++. +++....... .+...+. .++++|++++++.. ++.|.+||+. +... .+. +...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 4654322211 2333444 47899998887764 6799999986 3322 222 14568
Q ss_pred EEEEEe-CCE-EEEEEC-CCcEEEEEcc--CCccce----ecccccccccCCC------CeEEEE-EcCCceEEEEEecC
Q 002389 775 KSMSVV-QGK-IYIGCM-DSSIQELAVS--NNVERE----IKAPFKSWRLQSK------PINSLV-VYKDWLYSASSSVE 838 (929)
Q Consensus 775 ~sla~s-dg~-llsgs~-Dg~I~iwDl~--tg~~~~----i~~~~~~~~~~~~------~I~sl~-~~~d~i~~~s~S~d 838 (929)
..++|+ +|+ +++++. ++.|.+|++. ++.... +......+.++.. .+..+. ++|++.++...+..
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 899998 775 666664 7899999875 343211 1100000111121 478899 99998765544322
Q ss_pred CC-----eEEEEECC-CCCeEE---EecCCCCCeEEEEEec---CCCEEEEEeCC-CcEEEEECCCC
Q 002389 839 GS-----NIKEWRRH-RKPQIS---IAPEKGTTIQAMAVVE---DFIYLNYNSSA-SSLQIWLRGTQ 892 (929)
Q Consensus 839 Dg-----tI~IWDl~-~~~~i~---~l~~h~~~V~slafSp---dg~~LaSgS~D-G~I~IWdl~sg 892 (929)
++ +|.+|+++ ++.... ....+...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999985 566443 2333555677899999 89999998864 89999998665
No 164
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.44 E-value=4.9e-11 Score=131.05 Aligned_cols=251 Identities=9% Similarity=-0.039 Sum_probs=162.7
Q ss_pred CEEEEEEeCCEEEEE---------ECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---C--eEE
Q 002389 651 AVTALIYYKGLLCSG---------FSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---K--TIG 716 (929)
Q Consensus 651 ~Vtsl~fs~~~LaSG---------s~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---g--tIr 716 (929)
.+....+++.+++.. +.++.|.+||+.+++.. .+ ..+.+++|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 445555543454432 23678999999987643 23 568899999999998877654 3 478
Q ss_pred EEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecC---------------------------CeEEEEeCCC-ce-
Q 002389 717 VWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQG---------------------------HRMKVIDSSR-TL- 765 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~D---------------------------g~V~IWDl~~-~~- 765 (929)
+||+.+++........ . +. .|+|+++.++.++.+ ..|++||+.. ..
T Consensus 89 ~~~~~~g~~~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSSKKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEEEEEEEES--E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCceEEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 8888887654433322 2 44 578999998888743 5788999873 32
Q ss_pred eeeccCCCeEEEEEe-CCEEEEEECC------C-cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 766 KDIYRSKGIKSMSVV-QGKIYIGCMD------S-SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 766 ~~l~~~~~V~sla~s-dg~llsgs~D------g-~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
..+... .+..+.|+ +|.++++..+ . ...+|.+.++....+. .+ ..+..+ +|++..++..+.
T Consensus 166 ~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~-------~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF-------EK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEE-------EE-ESEEEE--EECSSCEEEEEC
T ss_pred eeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEec-------cC-cceeeE--CCCCCEEEEEEc
Confidence 333333 77788887 6733344433 1 3445544444332221 11 334444 677765544442
Q ss_pred C-------CCeEEEEECCCCCeEEEecCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 002389 838 E-------GSNIKEWRRHRKPQISIAPEKGTTIQA-MAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITSLLT 909 (929)
Q Consensus 838 d-------DgtI~IWDl~~~~~i~~l~~h~~~V~s-lafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~ 909 (929)
+ ...|.+|| ++.......+|...+.. +.|+ |+ ++++++.++.+++| +.+++....+.....|.+++|
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred cccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2 24788888 56655555666778886 9999 88 88999999999999 877766544444455888888
Q ss_pred cCCEEEEEECCCcE-EEee
Q 002389 910 ANDIVLCGTETGLI-KGWI 927 (929)
Q Consensus 910 dg~~LaSgs~DG~I-~IWd 927 (929)
++.++++++.++.. .+|.
T Consensus 310 s~~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 310 DEIVVYLKETATRLRELFT 328 (347)
T ss_dssp SSSEEEEEECSSSCCEEEE
T ss_pred eCcEEEEEcCCCChHHheE
Confidence 77677788887765 6774
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.43 E-value=1.7e-11 Score=147.74 Aligned_cols=273 Identities=5% Similarity=-0.021 Sum_probs=179.1
Q ss_pred CCCCCCEEEEEEeCCE--EEEE--ECCCeEEEEECCCCCeeEEEEeccCCCcEE---------EEEEc--CCCCE-EEEE
Q 002389 646 HKCSGAVTALIYYKGL--LCSG--FSDGSIKMWDIKKQSAMLVWDVKEHRKAVT---------SFSLF--EPGES-LLSG 709 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~~--LaSG--s~DGtIrIWD~~~~~~~~i~~l~gH~~~Vt---------slafs--pdg~~-LaSg 709 (929)
.+|...|..++|+++. ++++ +.++...||....+. ....+..|...+. ...|+ |||+. |+.+
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG--AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS--CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC--CcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 3688999999999663 4444 448899999964332 2466777776666 66666 99998 7765
Q ss_pred eC-CCeEEEEEcc--C-CeEEEEEEec---cCCCeE--EeccCCCEEEEEecC----------CeEEEEeCCC-------
Q 002389 710 SA-DKTIGVWQMV--Q-RKLELIEVIA---TKEPIR--KLDTYGKTIFASTQG----------HRMKVIDSSR------- 763 (929)
Q Consensus 710 s~-DgtIrIWDl~--t-g~~~~~~~~~---h~~~V~--s~s~~g~~L~sgs~D----------g~V~IWDl~~------- 763 (929)
+. +..|.+|++. + +......... +...+. +|+++|+.|++++.+ ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 54 5667777765 2 4322211111 233333 588999999998877 5899999876
Q ss_pred ceeeec-c-CCCeEEEEEe-CCE-EEEEECC--------CcEEEEEcc-CCccceecccccccccCCCCeEEEEEcCCce
Q 002389 764 TLKDIY-R-SKGIKSMSVV-QGK-IYIGCMD--------SSIQELAVS-NNVEREIKAPFKSWRLQSKPINSLVVYKDWL 830 (929)
Q Consensus 764 ~~~~l~-~-~~~V~sla~s-dg~-llsgs~D--------g~I~iwDl~-tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i 830 (929)
....+. . ...+..++|+ ||+ ++.++.+ ..|++||+. ++...... .+...+...+..+.++|++.
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~---~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR---TLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE---EEEEETTBCEEEEEECTTSC
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE---EeCCCCCceEcceEECCCCe
Confidence 333343 3 3456778887 776 6656644 379999998 45211111 12233457788999999988
Q ss_pred EEEEEecCCC--eEEEEECCCCCeEEEecCCCCC--------eEEEEEecCCCEEEEEeCCCcEEEE--ECCCCcEEEEE
Q 002389 831 YSASSSVEGS--NIKEWRRHRKPQISIAPEKGTT--------IQAMAVVEDFIYLNYNSSASSLQIW--LRGTQQKVGRI 898 (929)
Q Consensus 831 ~~~s~S~dDg--tI~IWDl~~~~~i~~l~~h~~~--------V~slafSpdg~~LaSgS~DG~I~IW--dl~sg~~i~tl 898 (929)
+.++.+ .++ .|..||..++.......++... +..++|+|+++++++++. +.++|| |..+++ +..+
T Consensus 255 l~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l 331 (662)
T 3azo_A 255 LIVATD-RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA 331 (662)
T ss_dssp EEEEEC-TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred EEEEEC-CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence 554443 556 6777777677755544443332 567899999999999998 999999 555554 6777
Q ss_pred eCCC-CeEEE-EEcCCE--EEEEECCCcEEEe
Q 002389 899 SAGS-KITSL-LTANDI--VLCGTETGLIKGW 926 (929)
Q Consensus 899 ~~h~-~Vtsv-s~dg~~--LaSgs~DG~I~IW 926 (929)
..+. .+..+ +++++. +++++.+....+|
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7664 37777 888773 3355556555555
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.42 E-value=4.9e-11 Score=133.95 Aligned_cols=253 Identities=12% Similarity=0.100 Sum_probs=163.5
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEecc---
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIAT--- 733 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs----------~DgtIrIWDl~tg~~~~~~~~~h--- 733 (929)
.|++|.+||..+++. +.++..+..+ .++|+|||++++++. .+++|.+||..+++.........
T Consensus 29 ~d~~v~v~D~~t~~~--~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF--LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCE--EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeE--EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 478999999988764 5677766665 899999999998876 36789999999877654433221
Q ss_pred ---CC-CeEEeccCCCEEEEEec--CCeEEEEeCCCc--eee-eccCCCeEEE-EEeCC--EEEEEECCCcEEEEEccC-
Q 002389 734 ---KE-PIRKLDTYGKTIFASTQ--GHRMKVIDSSRT--LKD-IYRSKGIKSM-SVVQG--KIYIGCMDSSIQELAVSN- 800 (929)
Q Consensus 734 ---~~-~V~s~s~~g~~L~sgs~--Dg~V~IWDl~~~--~~~-l~~~~~V~sl-a~sdg--~llsgs~Dg~I~iwDl~t- 800 (929)
.. .-..++++|++++++.. ++.|.+||.... ... +... ....+ .++++ .+++.+.||.+..|+...
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 11 12368999999999874 579999999843 222 2222 22222 33443 478889999999999865
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE--EEecC------CC----CCeEEEEE
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI--SIAPE------KG----TTIQAMAV 868 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i--~~l~~------h~----~~V~slaf 868 (929)
++..........+.....++. +...+++...+..+ .++.+.++|....... ..+.. +. .....++|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIF-IAPALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBC-SCCEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CcEeeeccccceEcCCCCceE-EEecccCCEEEEEe-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 332211000012222222221 11123333333233 5678999998655421 21110 01 11123789
Q ss_pred ecCCCEEEEEeC-----------CCcEEEEECCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEEeec
Q 002389 869 VEDFIYLNYNSS-----------ASSLQIWLRGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 869 Spdg~~LaSgS~-----------DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~--dg~~LaSgs~DG~I~IWdi 928 (929)
+||++.+..+.. ++.|.+||..+++.+.++..+. +.++++ +|++|++++. ++|.+||.
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 999887766543 3589999999999999999888 888776 5889988887 99999985
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.38 E-value=3.4e-10 Score=121.23 Aligned_cols=236 Identities=10% Similarity=0.083 Sum_probs=159.8
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEec------cCCCcEEEEEE-cCCCCEEEEEeC-CCeEE
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVK------EHRKAVTSFSL-FEPGESLLSGSA-DKTIG 716 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~------gH~~~Vtslaf-spdg~~LaSgs~-DgtIr 716 (929)
+|-..+.+++++ ++ ++++.+.++.|.+||.... . +..+. +|...+.++++ .+++..+++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-F--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-E--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-E--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 567789999998 44 6677788999999998743 2 34442 34567899999 467766666543 88999
Q ss_pred EEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceee-ec---cCCCeEEEEEe-CCEEEEE-E
Q 002389 717 VWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKD-IY---RSKGIKSMSVV-QGKIYIG-C 788 (929)
Q Consensus 717 IWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~-l~---~~~~V~sla~s-dg~llsg-s 788 (929)
+|| .+++........+...+. .+.++++.+++...++.|.+||..+.... +. ....+..++++ +|.++++ .
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 999 456543332222333444 35678877666677889999998754332 22 12458899997 7886665 4
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC-eEEEEECCCCCeEEEecCCC--CCeEE
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS-NIKEWRRHRKPQISIAPEKG--TTIQA 865 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg-tI~IWDl~~~~~i~~l~~h~--~~V~s 865 (929)
.++.|++||........+.. .++...+..+++.+++.+.++.. .++ .|.+||.. +..+..+..+. ..+.+
T Consensus 183 ~~~~i~~~~~~g~~~~~~~~-----~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 183 RAHCVKVFNYEGQYLRQIGG-----EGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQD-GQLISALESKVKHAQCFD 255 (286)
T ss_dssp GGTEEEEEETTCCEEEEESC-----TTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTT-SCEEEEEEESSCCSCEEE
T ss_pred CCCEEEEEcCCCCEEEEEcc-----CCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCC-CCEEEEEcccCCCCccee
Confidence 58899999975432222210 11235678899998887666654 344 99999965 44455554443 34789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCcE
Q 002389 866 MAVVEDFIYLNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 866 lafSpdg~~LaSgS~DG~I~IWdl~sg~~ 894 (929)
++++|+|+++++ +.|+.|++|+.....+
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 999999987777 5799999999765443
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.36 E-value=6.2e-10 Score=119.16 Aligned_cols=231 Identities=8% Similarity=0.061 Sum_probs=157.3
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe-----ccCCCeEE--eccCCCEEEEEe-c-CCeEEE
Q 002389 688 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI-----ATKEPIRK--LDTYGKTIFAST-Q-GHRMKV 758 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~-----~h~~~V~s--~s~~g~~L~sgs-~-Dg~V~I 758 (929)
.+|-..+.+++++++|..+++.+.++.|.+||.. ++....... ++...+.. +...+..++++. . ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566789999999999988888889999999987 443322211 11223444 422344455554 3 789999
Q ss_pred EeCCCceee-ecc--CCCeEEEEEe-CCEEEEEE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEE
Q 002389 759 IDSSRTLKD-IYR--SKGIKSMSVV-QGKIYIGC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA 833 (929)
Q Consensus 759 WDl~~~~~~-l~~--~~~V~sla~s-dg~llsgs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~ 833 (929)
||..+.... +.. ...+..+++. +|.++++. .++.|.+||........+.. ..+...+..+.+.+++.+.+
T Consensus 105 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 105 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-----SKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC-----TTTCSSEEEEEECSSSEEEE
T ss_pred ECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCC-----CCccCCcEEEEECCCCCEEE
Confidence 997654332 322 3458889997 77766654 57889999965422222110 12345678999999877655
Q ss_pred EEecCCCeEEEEECCCCCeEEEecCC--CCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCcEEEEEeCCC---CeEEE
Q 002389 834 SSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAMAVVEDFIYLNYNSSAS-SLQIWLRGTQQKVGRISAGS---KITSL 907 (929)
Q Consensus 834 s~S~dDgtI~IWDl~~~~~i~~l~~h--~~~V~slafSpdg~~LaSgS~DG-~I~IWdl~sg~~i~tl~~h~---~Vtsv 907 (929)
+.. .++.|++||... ..+..+..+ ...+..++++|+|+++++...++ .|.+|+. +++.+..+..+. .+.++
T Consensus 180 ~~~-~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 180 SDN-RAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEG-GGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred EEC-CCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 543 567999999854 445555443 36789999999999999988776 9999995 577777776653 26777
Q ss_pred EEc--CCEEEEEECCCcEEEeec
Q 002389 908 LTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 908 s~d--g~~LaSgs~DG~I~IWdi 928 (929)
+++ |+++++ +.|++|++|+.
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEEC
T ss_pred EECCCCcEEEE-CCCCeEEEEEc
Confidence 765 555555 68999999985
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.35 E-value=1.8e-10 Score=127.12 Aligned_cols=236 Identities=12% Similarity=0.022 Sum_probs=163.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEEccCCeEEEEEEeccCCCeE--EeccCC
Q 002389 691 RKAVTSFSLFEPGESLLSGSAD------------------------KTIGVWQMVQRKLELIEVIATKEPIR--KLDTYG 744 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~D------------------------gtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g 744 (929)
-+.|.+++++|+|+.+++.+.+ ++|.+||..+++........+..... ++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999988888877 47999999888864332222222333 567888
Q ss_pred CEEEEEecCCeEEEEeCCCc---eeeecc----------CCCeEEEEEe--CCEEEEEE--CCCcEEEEEccCCccceec
Q 002389 745 KTIFASTQGHRMKVIDSSRT---LKDIYR----------SKGIKSMSVV--QGKIYIGC--MDSSIQELAVSNNVEREIK 807 (929)
Q Consensus 745 ~~L~sgs~Dg~V~IWDl~~~---~~~l~~----------~~~V~sla~s--dg~llsgs--~Dg~I~iwDl~tg~~~~i~ 807 (929)
+.+++...++.|+.||..+. ...+.. -.....++++ +|.++++. .++.|++||.. +......
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEe
Confidence 87777778899999998754 333321 1247889997 57766655 48999999954 3332211
Q ss_pred cccccc----ccCCCCeEEEEEcCC-ceEEEEEecCCCeEEEEECCCCCeEEEec--CCCCCeEEEEEec------CCCE
Q 002389 808 APFKSW----RLQSKPINSLVVYKD-WLYSASSSVEGSNIKEWRRHRKPQISIAP--EKGTTIQAMAVVE------DFIY 874 (929)
Q Consensus 808 ~~~~~~----~~~~~~I~sl~~~~d-~i~~~s~S~dDgtI~IWDl~~~~~i~~l~--~h~~~V~slafSp------dg~~ 874 (929)
.....- ..+...+..+++.++ +.+.++- ..++.|++||..++..+..+. .+...+.+++|+| +|..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d-~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD-RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEE-TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE-CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCE
Confidence 000000 011234788999987 5555544 367899999999888777763 4566889999999 3333
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEe---CC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 875 LNYNSSASSLQIWLRGTQQKVGRIS---AG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 875 LaSgS~DG~I~IWdl~sg~~i~tl~---~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.++.+.++.|++|+..+++.+..+. ++ ..+.+++++ |.++++...+++|++|++
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 3333345689999999999999885 33 348888876 668888888999999985
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.35 E-value=1.2e-10 Score=130.80 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=160.1
Q ss_pred EEEEe-CC-EEEEEE----------CCCeEEEEECCCCCeeEEEEecc------CCCcEEEEEEcCCCCEEEEEeC--CC
Q 002389 654 ALIYY-KG-LLCSGF----------SDGSIKMWDIKKQSAMLVWDVKE------HRKAVTSFSLFEPGESLLSGSA--DK 713 (929)
Q Consensus 654 sl~fs-~~-~LaSGs----------~DGtIrIWD~~~~~~~~i~~l~g------H~~~Vtslafspdg~~LaSgs~--Dg 713 (929)
.++|+ ++ +++++. .+++|.+||..+.+. +.++.. +......++|+|||++|+++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 88998 44 777765 367899999987754 455532 2345677999999999988764 68
Q ss_pred eEEEEEccCCeEEEEEEeccCCC-eEEeccCC-CEEEEEecCCeEEEEeCCC--cee-------eeccCCCeEEEEE-eC
Q 002389 714 TIGVWQMVQRKLELIEVIATKEP-IRKLDTYG-KTIFASTQGHRMKVIDSSR--TLK-------DIYRSKGIKSMSV-VQ 781 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h~~~-V~s~s~~g-~~L~sgs~Dg~V~IWDl~~--~~~-------~l~~~~~V~sla~-sd 781 (929)
+|.+||+.+++..... ...... -..+.+++ ..+++.+.||.+.+|+... ... .+........+.+ .+
T Consensus 132 ~v~v~d~~~~~~~~~~-i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (361)
T 2oiz_A 132 SIGIVDVAKGDYVEDV-TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD 210 (361)
T ss_dssp EEEEEETTTTEEEEEE-GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC
T ss_pred eEEEEECCCCcEEEEE-ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc
Confidence 9999999998753320 222211 12244544 5778888999999888752 211 1111111111111 23
Q ss_pred C-EEEEEECCCcEEEEEccCCccceecc---c-----ccccccCCCCeEEEEEcCCceEE-EEEecC---------CCeE
Q 002389 782 G-KIYIGCMDSSIQELAVSNNVEREIKA---P-----FKSWRLQSKPINSLVVYKDWLYS-ASSSVE---------GSNI 842 (929)
Q Consensus 782 g-~llsgs~Dg~I~iwDl~tg~~~~i~~---~-----~~~~~~~~~~I~sl~~~~d~i~~-~s~S~d---------DgtI 842 (929)
+ .++..+.++.+.++|+..+....... . ...|.. .....+.+++++..+ ++.+++ +++|
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v 288 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI 288 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence 3 56667788999999987654322110 0 000000 111125677774433 333211 3489
Q ss_pred EEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--cEEEEEeCC-CCeEEEEEc
Q 002389 843 KEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ--QKVGRISAG-SKITSLLTA 910 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg--~~i~tl~~h-~~Vtsvs~d 910 (929)
.+||..+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++ +.+.++... ...+.++++
T Consensus 289 ~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 289 WVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp EEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred EEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 999999999998888776 999999999999998886 99999999999 999998544 335555544
No 171
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.35 E-value=3.8e-11 Score=146.27 Aligned_cols=270 Identities=8% Similarity=-0.055 Sum_probs=171.6
Q ss_pred CEEEEEEe-CC-EEEEEEC---------CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 651 AVTALIYY-KG-LLCSGFS---------DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 651 ~Vtsl~fs-~~-~LaSGs~---------DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
.|.+++|| |+ +|++++. |++|++||+.+++......+ ...+.+++|+|||+.|++++ |++|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 48899999 44 7887776 79999999998753000222 35688999999999999886 88999999
Q ss_pred ccCCeEEEEEEeccCC-------------------CeEEeccCCCEEEEEecCC--------------------------
Q 002389 720 MVQRKLELIEVIATKE-------------------PIRKLDTYGKTIFASTQGH-------------------------- 754 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~-------------------~V~s~s~~g~~L~sgs~Dg-------------------------- 754 (929)
+.+++.......++.. .-.+|+|+|+.|++++.|.
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 9888754332223222 1346899999999987652
Q ss_pred --------eEEEEeCCCcee----ee------c-cCCCeEEEEEe-CCEEEEE-ECC----CcEEEEE----ccCCccce
Q 002389 755 --------RMKVIDSSRTLK----DI------Y-RSKGIKSMSVV-QGKIYIG-CMD----SSIQELA----VSNNVERE 805 (929)
Q Consensus 755 --------~V~IWDl~~~~~----~l------~-~~~~V~sla~s-dg~llsg-s~D----g~I~iwD----l~tg~~~~ 805 (929)
.|++||+.+... .+ . +...+..++|+ |++++.. ... ..|.+|| ..+++...
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 788999874321 11 1 23357899997 8875543 222 2488889 76665433
Q ss_pred ecccccccccCCCCeE-----EEEEcCCceEEEE-EecCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 806 IKAPFKSWRLQSKPIN-----SLVVYKDWLYSAS-SSVEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~-----sl~~~~d~i~~~s-~S~dDg--tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+.. .....+...+. .+.++|++...+. .+..++ .|.+||..++. ...+..+...+..+.++ +++.++.
T Consensus 297 ~~~--~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~ 372 (719)
T 1z68_A 297 TQE--HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFY 372 (719)
T ss_dssp GGE--EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEE
T ss_pred EEe--cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEE
Confidence 210 00012333343 6778888764332 232333 67788887776 44566666678888888 8888777
Q ss_pred EeCC-----CcEEEEECCC--Cc-EEEEEeC----C-CCeEEEEEc--CCEEE-EEECC--CcEEEeec
Q 002389 878 NSSA-----SSLQIWLRGT--QQ-KVGRISA----G-SKITSLLTA--NDIVL-CGTET--GLIKGWIP 928 (929)
Q Consensus 878 gS~D-----G~I~IWdl~s--g~-~i~tl~~----h-~~Vtsvs~d--g~~La-Sgs~D--G~I~IWdi 928 (929)
.+.+ +.+++|.+.. +. ....+.. + ..+..++|+ ++.++ +++.+ ..+.+|+.
T Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 6655 8899998643 42 2333432 3 235666554 66544 44444 35667763
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.34 E-value=1.1e-10 Score=130.21 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=159.2
Q ss_pred EECCCCCeeEEEEeccCCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEEccCCeEEEEEEeccCCCe--EEeccC
Q 002389 674 WDIKKQSAMLVWDVKEHRKAVTS-----FSLFEPGESLLSGSA-DK--TIGVWQMVQRKLELIEVIATKEPI--RKLDTY 743 (929)
Q Consensus 674 WD~~~~~~~~i~~l~gH~~~Vts-----lafspdg~~LaSgs~-Dg--tIrIWDl~tg~~~~~~~~~h~~~V--~s~s~~ 743 (929)
+|..++.. +..+..|...... .+|+|||++|+.++. +| .|.+||+.+++... ....+...+ ..|+++
T Consensus 15 ~~~~~g~~--~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 15 QDASTGAQ--VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp ECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECTT
T ss_pred ecCCCCcc--eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcCC
Confidence 46666543 6677777776666 889999999988887 67 48888998887433 223333333 369999
Q ss_pred CCEEEEEecCCeEEEEeCCCce-eeec-cC-CCeEEEEE--e-CCEEEEE-----------------------ECCCcEE
Q 002389 744 GKTIFASTQGHRMKVIDSSRTL-KDIY-RS-KGIKSMSV--V-QGKIYIG-----------------------CMDSSIQ 794 (929)
Q Consensus 744 g~~L~sgs~Dg~V~IWDl~~~~-~~l~-~~-~~V~sla~--s-dg~llsg-----------------------s~Dg~I~ 794 (929)
++.|+.++.++.+++||+.... ..+. .. ..+....+ + ++..+++ ..+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 9999999999999999988432 2222 22 22322332 3 6664442 2346799
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcC-CceEEEEEecC-----CCeEEEEECCCCCeEEEecCCC--CCeEEE
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVE-----GSNIKEWRRHRKPQISIAPEKG--TTIQAM 866 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~d-----DgtI~IWDl~~~~~i~~l~~h~--~~V~sl 866 (929)
+||+.+++...+ ..+...+..+.++| ++..++..+.. ...|.++|..++.... +..+. ..+...
T Consensus 172 ~~d~~~g~~~~l-------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 172 RVDLKTGESTVI-------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHE 243 (388)
T ss_dssp EEETTTCCEEEE-------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEE
T ss_pred EEECCCCceEEe-------ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccc
Confidence 999988765443 22345678899999 88766554422 2378888887766544 33343 357889
Q ss_pred EEecCCCEEEEEeC-CC----cEEEEECCCCcE--EEEEeCCCC------eEEEEEcCCEEEEE---------ECCCcEE
Q 002389 867 AVVEDFIYLNYNSS-AS----SLQIWLRGTQQK--VGRISAGSK------ITSLLTANDIVLCG---------TETGLIK 924 (929)
Q Consensus 867 afSpdg~~LaSgS~-DG----~I~IWdl~sg~~--i~tl~~h~~------Vtsvs~dg~~LaSg---------s~DG~I~ 924 (929)
+|+|||+.|+..+. ++ .|++||+.+++. +..+.++.. -..++++|+.|+.. ..++.|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 99999998765443 22 399999999875 444443111 11467888866643 5567899
Q ss_pred Eeec
Q 002389 925 GWIP 928 (929)
Q Consensus 925 IWdi 928 (929)
+||+
T Consensus 324 ~~d~ 327 (388)
T 3pe7_A 324 VFNM 327 (388)
T ss_dssp EEET
T ss_pred EEec
Confidence 9985
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=9.7e-10 Score=121.19 Aligned_cols=235 Identities=11% Similarity=0.003 Sum_probs=162.9
Q ss_pred CCCEEEEEEe-CC-EEEEEECC------------------------CeEEEEECCCCCeeEEEEec-cCCCcEEEEEEcC
Q 002389 649 SGAVTALIYY-KG-LLCSGFSD------------------------GSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFE 701 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~D------------------------GtIrIWD~~~~~~~~i~~l~-gH~~~Vtslafsp 701 (929)
-+.|.+|+++ ++ ++++.+.+ ++|.+||..+++. +..+. ++-..+..++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--LQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--EEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--EeccCCCccCCceEEEECC
Confidence 4679999998 44 66666666 4799999988764 33432 4556889999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCe-EEEEEE--------eccCCCeE--Eecc-CCCEEEEEe-cCCeEEEEeCCCceeee
Q 002389 702 PGESLLSGSADKTIGVWQMVQRK-LELIEV--------IATKEPIR--KLDT-YGKTIFAST-QGHRMKVIDSSRTLKDI 768 (929)
Q Consensus 702 dg~~LaSgs~DgtIrIWDl~tg~-~~~~~~--------~~h~~~V~--s~s~-~g~~L~sgs-~Dg~V~IWDl~~~~~~l 768 (929)
+|+.+++...++.|++||..... ...... ..+..... ++++ ++..+++.+ .++.|++||.++.....
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~ 180 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ 180 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence 99988888889999999986442 111111 11111233 4667 566666665 58999999977544333
Q ss_pred cc--C----------CCeEEEEEe-C-CEEEE-EECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEE
Q 002389 769 YR--S----------KGIKSMSVV-Q-GKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSA 833 (929)
Q Consensus 769 ~~--~----------~~V~sla~s-d-g~lls-gs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~ 833 (929)
.. . .....++++ + +.+++ ...++.|++||..+|+...... ...+...+..+.++| +....
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~----~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK----HASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC----CTTTTTCEEEEEEET-TEEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe----ccccCCCcceeeecC-CEEEE
Confidence 22 1 237889997 5 77655 4567889999998665433211 123356677888888 33333
Q ss_pred EEe------cCCCeEEEEECCCCCeEEEe---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 834 SSS------VEGSNIKEWRRHRKPQISIA---PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 834 s~S------~dDgtI~IWDl~~~~~i~~l---~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
..+ ..+.+|++||..++..+..+ .++...+..++++|+|..+++...++.|++|++.
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 221 12358999999999988877 3677789999999999888998899999999864
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.31 E-value=3.7e-10 Score=123.60 Aligned_cols=257 Identities=8% Similarity=0.031 Sum_probs=172.7
Q ss_pred CCCEEEEEEeC--CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 649 SGAVTALIYYK--GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 649 ~~~Vtsl~fs~--~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
...|+++.|++ ..++..+.++.++.|. . .....+.++...+.+++|+|+|+.++++..++.|.+||..+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred ccccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 34567778872 2566667889999992 2 235667777788899999999998788888999999999888754
Q ss_pred EEEEeccCCCeEE--eccCCCEEEEEecC----CeEEEEeCCCce-e-eec---cCCCeEEEEEe-CCEEEEEECC----
Q 002389 727 LIEVIATKEPIRK--LDTYGKTIFASTQG----HRMKVIDSSRTL-K-DIY---RSKGIKSMSVV-QGKIYIGCMD---- 790 (929)
Q Consensus 727 ~~~~~~h~~~V~s--~s~~g~~L~sgs~D----g~V~IWDl~~~~-~-~l~---~~~~V~sla~s-dg~llsgs~D---- 790 (929)
... ..+...+.+ ++++++.+++...+ +.|.+||..... . .+. ....+.++.++ +|.++.++..
T Consensus 80 ~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~ 158 (333)
T 2dg1_A 80 RPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST 158 (333)
T ss_dssp EEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred EEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccccc
Confidence 332 234455665 46777766666655 689999987432 2 111 23458888987 8887776653
Q ss_pred ---CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeEE--------EecC
Q 002389 791 ---SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQIS--------IAPE 858 (929)
Q Consensus 791 ---g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i~--------~l~~ 858 (929)
+.|..+|..++....+. .....+..+.+++++..+......++.|.+||... +.... .+.+
T Consensus 159 ~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 159 NPLGGVYYVSPDFRTVTPII-------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BCCEEEEEECTTSCCEEEEE-------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred CCCceEEEEeCCCCEEEEee-------cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 45666665544332221 11234678889998754333333467899999853 33221 1222
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-------CeEEEEEc--CCEEEEEECC
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-------KITSLLTA--NDIVLCGTET 920 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-------~Vtsvs~d--g~~LaSgs~D 920 (929)
+ ..+..++++++|+++++...++.|.+||. +++.+..+..+. .+.+++|+ ++.|+.++.+
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 2 46788999999999888888899999998 577777776553 47777775 5577665555
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.30 E-value=1e-10 Score=130.22 Aligned_cols=265 Identities=10% Similarity=-0.015 Sum_probs=162.9
Q ss_pred CCCEEEEEEe-CC-EEEEEECC---CeEEEEECCCCCeeEEEEeccCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 649 SGAVTALIYY-KG-LLCSGFSD---GSIKMWDIKKQSAMLVWDVKEHRKAV-TSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 649 ~~~Vtsl~fs-~~-~LaSGs~D---GtIrIWD~~~~~~~~i~~l~gH~~~V-tslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
...+..++|+ ++ +|+.+..+ ..|.+||..+++. ..+..+...+ ..+.|+|||++|+.++.++.|++||+.+
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC
Confidence 3346677888 44 66655443 4788889988753 3333333333 3478999999999999999999999988
Q ss_pred CeEEEEEEeccCCCe---------------------EEeccCCCEEEEE-----ecCCeEEEEeCCC-ceeee-ccCCCe
Q 002389 723 RKLELIEVIATKEPI---------------------RKLDTYGKTIFAS-----TQGHRMKVIDSSR-TLKDI-YRSKGI 774 (929)
Q Consensus 723 g~~~~~~~~~h~~~V---------------------~s~s~~g~~L~sg-----s~Dg~V~IWDl~~-~~~~l-~~~~~V 774 (929)
++....... +.... ..++++++.++.+ ..+..|.+||+.. ....+ .....+
T Consensus 112 ~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWL 190 (396)
T ss_dssp CCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCE
T ss_pred CCcEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccc
Confidence 875433321 11111 1234555554443 3456899999873 22222 234567
Q ss_pred EEEEEeC--CE-EEEEECC------CcEEEEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecC--C--C
Q 002389 775 KSMSVVQ--GK-IYIGCMD------SSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVE--G--S 840 (929)
Q Consensus 775 ~sla~sd--g~-llsgs~D------g~I~iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~d--D--g 840 (929)
..+.|+. +. ++..+.+ ..|.+||+.++....+. ... ...+..+.++|++..++..+.+ . +
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee------ccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 8888863 55 5555443 36888888765433221 111 2357778999988654433322 2 3
Q ss_pred eEEEEECCCCCeEEEecCCCCCeEEEEEec-CCCEEEEEe----------------CCCcEEEEECCCCcEEEEEeCCCC
Q 002389 841 NIKEWRRHRKPQISIAPEKGTTIQAMAVVE-DFIYLNYNS----------------SASSLQIWLRGTQQKVGRISAGSK 903 (929)
Q Consensus 841 tI~IWDl~~~~~i~~l~~h~~~V~slafSp-dg~~LaSgS----------------~DG~I~IWdl~sg~~i~tl~~h~~ 903 (929)
.|++||..++......... ... +.|+| ||+++++++ .++.|++||..+++.. .+..+..
T Consensus 265 ~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~ 340 (396)
T 3c5m_A 265 VIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHST 340 (396)
T ss_dssp EEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCC
T ss_pred eEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCC
Confidence 4999999888754432211 233 89999 999988765 3478999999887753 3333321
Q ss_pred ------------eEE--EEEcCCEEEEEEC-CCcEEEee
Q 002389 904 ------------ITS--LLTANDIVLCGTE-TGLIKGWI 927 (929)
Q Consensus 904 ------------Vts--vs~dg~~LaSgs~-DG~I~IWd 927 (929)
+.. ++++|+.|+.++. +|...+|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 333 4456777776654 66666764
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.29 E-value=1.5e-10 Score=142.11 Aligned_cols=232 Identities=10% Similarity=-0.012 Sum_probs=150.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCC-----Ce--EEeccCCCEEEEEecC---------CeE
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKE-----PI--RKLDTYGKTIFASTQG---------HRM 756 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~-----~V--~s~s~~g~~L~sgs~D---------g~V 756 (929)
...++.|+|||++++++ ||+|++||+.+++.... ...+.. .. .+++|+|++++.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 35678999999988886 99999999999885433 333332 22 4679999999998876 566
Q ss_pred EEEeCCCc-eeeecc-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccc---cccccCC---------CCeE
Q 002389 757 KVIDSSRT-LKDIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPF---KSWRLQS---------KPIN 821 (929)
Q Consensus 757 ~IWDl~~~-~~~l~~-~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~---~~~~~~~---------~~I~ 821 (929)
.+||+... ...+.. ...+...+|+ ||+.++-..++.|++||+.++....+.... ..+.++. ....
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 79999843 333333 4568899998 888444446899999999887654331100 0111111 1123
Q ss_pred EEEEcCCceEEEEEecCCC-----------------------------------eEEEEECCC---C---CeEEEec---
Q 002389 822 SLVVYKDWLYSASSSVEGS-----------------------------------NIKEWRRHR---K---PQISIAP--- 857 (929)
Q Consensus 822 sl~~~~d~i~~~s~S~dDg-----------------------------------tI~IWDl~~---~---~~i~~l~--- 857 (929)
.+.++||+..++..+.+++ +|++||+.+ + .......
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 4788898877665542211 688899988 7 4333322
Q ss_pred --CCCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCc----E--EEEE--eCC-CCeE-----E--EEEcCCEEE
Q 002389 858 --EKGTTIQAMAVVEDFIYLNYNSS----ASSLQIWLRGTQQ----K--VGRI--SAG-SKIT-----S--LLTANDIVL 915 (929)
Q Consensus 858 --~h~~~V~slafSpdg~~LaSgS~----DG~I~IWdl~sg~----~--i~tl--~~h-~~Vt-----s--vs~dg~~La 915 (929)
+|...+..++|+|||+.++.... +..|++||..+|+ + +..+ ..+ ..|. + +++||+.|+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~ 334 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence 37788999999999997765532 3479999998887 2 2222 333 2233 3 445677766
Q ss_pred -EEE-CCC--cEEEee
Q 002389 916 -CGT-ETG--LIKGWI 927 (929)
Q Consensus 916 -Sgs-~DG--~I~IWd 927 (929)
..+ .+| .|++|+
T Consensus 335 ~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 335 KIISNEEGYRHICYFQ 350 (740)
T ss_dssp EEEECTTSCEEEEEEE
T ss_pred EEEEcCCCceEEEEEE
Confidence 555 445 455555
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.28 E-value=2.4e-08 Score=106.39 Aligned_cols=269 Identities=9% Similarity=0.048 Sum_probs=176.5
Q ss_pred CCCCCEEEEEEe-CCEEEEEE-CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 647 KCSGAVTALIYY-KGLLCSGF-SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~~LaSGs-~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.+...+.+++++ ++.+..+. .++.|.+||.. +... ......+...+.++++.++|...++...++.|..||.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 345789999998 55444444 47899999998 5432 22233456789999999999988877778899999986 44
Q ss_pred EEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeecc---CCCeEEEEEe-CCEEEEEEC-CCcEEEEE
Q 002389 725 LELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIYR---SKGIKSMSVV-QGKIYIGCM-DSSIQELA 797 (929)
Q Consensus 725 ~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~---~~~V~sla~s-dg~llsgs~-Dg~I~iwD 797 (929)
............+.. +.+++...++...++.|..||..+....+.. ...+..+++. +|.++.+.. ++.|..||
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 322222222334444 4566666666666789999998654443322 3458888887 778777664 68899999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE-ecCCCCCeEEEEEecCCCEEE
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI-APEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~-l~~h~~~V~slafSpdg~~La 876 (929)
. ++....+.. ......+..+.+.+++...++.. .++.|..||. ++..... ...+...+.+++++++|+..+
T Consensus 169 ~-~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 169 E-SGDITEFKI-----PTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp T-TCCEEEEEC-----SSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred C-CCcEEEeeC-----CCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 8 554433211 12244577888888766555432 4678999999 6654332 334556799999999999777
Q ss_pred EEeCCCcEEEEECCCCcEEEEEe--CC-CCeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 877 YNSSASSLQIWLRGTQQKVGRIS--AG-SKITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 877 SgS~DG~I~IWdl~sg~~i~tl~--~h-~~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
+...++.|..||. +++ +..+. .+ ..+.++++....+..++..+.|..+++
T Consensus 241 ~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 241 TEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp EETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEECSSCEEEEETTTEEEEEEE
T ss_pred eccCCceEEEECC-CCc-eEEEeCCCCCCccceEEecCCCEEEEecCCcEEEEEc
Confidence 7767899999998 454 34443 22 347777664233444444555666553
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.26 E-value=2.7e-09 Score=117.81 Aligned_cols=248 Identities=8% Similarity=-0.014 Sum_probs=168.4
Q ss_pred CCEEEEEEeCCE-EEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 650 GAVTALIYYKGL-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 650 ~~Vtsl~fs~~~-LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
.....+.+.++. +++...++.|.+||..+++. +.++. .......++++++++..++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~--~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKE--VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCE--EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEE--EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 456778888664 45555679999999998864 55564 346788999999985444444899999999999876544
Q ss_pred EEeccCC----CeEEeccCCCEEEEEe--cCCeEEEEeCCC--ceeeeccCCCeEEEEEe-CCEEEEEECC---------
Q 002389 729 EVIATKE----PIRKLDTYGKTIFAST--QGHRMKVIDSSR--TLKDIYRSKGIKSMSVV-QGKIYIGCMD--------- 790 (929)
Q Consensus 729 ~~~~h~~----~V~s~s~~g~~L~sgs--~Dg~V~IWDl~~--~~~~l~~~~~V~sla~s-dg~llsgs~D--------- 790 (929)
...+... ....+..+++.++++. .++.|.+||... ....+........+.++ +|+++.++..
T Consensus 121 i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp EECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred EEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 3332200 1222222567777776 478999999873 23334444556677777 7887776653
Q ss_pred --CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE--ecCCCCCeEEE
Q 002389 791 --SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI--APEKGTTIQAM 866 (929)
Q Consensus 791 --g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~--l~~h~~~V~sl 866 (929)
+.|.++|..+++...... ...+.....++++|++..+.... +.|.+||..+++.... ...+......+
T Consensus 201 ~~~~v~~id~~t~~v~~~~~-----~~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t~~~~~~~~~~~~~~~p~gi 272 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFK-----FKLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEADRVPVRPFLEFRDTKYYGL 272 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEE-----CCTTCCCEEEEECTTSCEEEEES---SSEEEEETTCSSCCSSCSBCCCSSCEEEE
T ss_pred CCceEEEEECCCCeEEEEEe-----cCCCCCceeEEEecCCCEEEEEc---cEEEEEECCCCceeeeeeecCCCCceEEE
Confidence 689999998865432110 11134678899998766655442 2899999988775321 22224678899
Q ss_pred EEec-CCCEEEEE----eCCCcEEEEECCCCcEEEEEeCCCCeEEEEE
Q 002389 867 AVVE-DFIYLNYN----SSASSLQIWLRGTQQKVGRISAGSKITSLLT 909 (929)
Q Consensus 867 afSp-dg~~LaSg----S~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~ 909 (929)
+++| ++...++. ..++.|.+||.. |+.+.++..+..-..++|
T Consensus 273 ~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 273 TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 9999 66666776 678999999998 999999886644555554
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.23 E-value=3.8e-09 Score=113.91 Aligned_cols=233 Identities=11% Similarity=0.062 Sum_probs=159.3
Q ss_pred CCCCEEEEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 648 CSGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 648 H~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+.....+++|+ ++ +++++..++.|..||..++ ...+..+...+.+++++|+|+.+++...++.|.+||..+++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 45667899998 44 6888889999999999876 34555677889999999999988877778999999998887
Q ss_pred EEEEEEeccC---CCe--EEeccCCCEEEEE----e-------------cCCeEEEEeCCCceeeecc-CCCeEEEEEe-
Q 002389 725 LELIEVIATK---EPI--RKLDTYGKTIFAS----T-------------QGHRMKVIDSSRTLKDIYR-SKGIKSMSVV- 780 (929)
Q Consensus 725 ~~~~~~~~h~---~~V--~s~s~~g~~L~sg----s-------------~Dg~V~IWDl~~~~~~l~~-~~~V~sla~s- 780 (929)
.......... ..+ ..++++|+..++. + ..+.|..++..+....+.. ......++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECT
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECC
Confidence 5433211111 111 3467888877763 2 1346777776544444333 3457889997
Q ss_pred CCE-EEEEECCCcEEEEEcc-CCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec
Q 002389 781 QGK-IYIGCMDSSIQELAVS-NNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP 857 (929)
Q Consensus 781 dg~-llsgs~Dg~I~iwDl~-tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~ 857 (929)
+|+ +++.+.++.|.+|++. ++.. ... +.+..+...+..+.+.+++.+.++. ++.|.+||.+ +.....+.
T Consensus 182 dg~~lv~~~~~~~i~~~~~~~~g~~~~~~----~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~~-g~~~~~~~ 253 (296)
T 3e5z_A 182 SGNLLVSDTGDNATHRYCLNARGETEYQG----VHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTPD-GDELGRVL 253 (296)
T ss_dssp TSCEEEEETTTTEEEEEEECSSSCEEEEE----EEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECTT-SCEEEEEE
T ss_pred CCCEEEEeCCCCeEEEEEECCCCcCcCCC----eEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECCC-CCEEEEEE
Confidence 776 5555567899999987 3432 111 1112234455678888888765554 5789999987 66666776
Q ss_pred CCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCcE
Q 002389 858 EKGTTIQAMAV-VEDFIYLNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 858 ~h~~~V~slaf-Spdg~~LaSgS~DG~I~IWdl~sg~~ 894 (929)
.+.. +.+++| +|+++.|+.++.+ .+.-++.++.+.
T Consensus 254 ~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 254 TPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp CSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 6766 899999 5899999888865 455556655443
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.22 E-value=2.6e-09 Score=117.90 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=164.6
Q ss_pred CCCeEEEEECCCCCeeEEEEec------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVK------EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR-- 738 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~------gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~-- 738 (929)
.+++|.+||..+++. ...+. ........+.+. +++..++...++.|.+||..+++...... ......
T Consensus 15 ~~~~l~~~d~~t~~~--~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEV--ENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEE--ECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEE
T ss_pred CCceEEEEECCCCEE--hhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEE
Confidence 389999999998753 22221 122446778774 34445566668999999999988654432 222333
Q ss_pred EeccCCCEEEEEe-cCCeEEEEeCCCc--eeeeccCC------CeEEEEEeCCEEEEEE--CCCcEEEEEccCCccceec
Q 002389 739 KLDTYGKTIFAST-QGHRMKVIDSSRT--LKDIYRSK------GIKSMSVVQGKIYIGC--MDSSIQELAVSNNVEREIK 807 (929)
Q Consensus 739 s~s~~g~~L~sgs-~Dg~V~IWDl~~~--~~~l~~~~------~V~sla~sdg~llsgs--~Dg~I~iwDl~tg~~~~i~ 807 (929)
.+++++ .++++. .++.|.+||.... ...+.... ....+++.+++++++. .++.|.++|..+++.....
T Consensus 90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 90 HFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred EEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 355666 666666 7899999998742 22333333 5567777888877776 4889999999987643321
Q ss_pred ccccccccCCCCeEEEEEcCCceEEEEEecC---------CCeEEEEECCCCCeEEEecCC-CCCeEEEEEecCCCEEEE
Q 002389 808 APFKSWRLQSKPINSLVVYKDWLYSASSSVE---------GSNIKEWRRHRKPQISIAPEK-GTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 808 ~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---------DgtI~IWDl~~~~~i~~l~~h-~~~V~slafSpdg~~LaS 877 (929)
.. ......+.+.+++.+.++...+ .+.|.+||..+++....+... ......++|+||++++..
T Consensus 169 ------~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 169 ------TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp ------EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred ------Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 11 2234567778877755544311 268999999988877655432 346899999999999888
Q ss_pred EeCCCcEEEEECCCCcEEE--EEeC-CCCeEEEEEc---CCEEEEE----ECCCcEEEeec
Q 002389 878 NSSASSLQIWLRGTQQKVG--RISA-GSKITSLLTA---NDIVLCG----TETGLIKGWIP 928 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~i~--tl~~-h~~Vtsvs~d---g~~LaSg----s~DG~I~IWdi 928 (929)
+.. .|.+||..+++... .+.. .....+++++ ++..++. ..+|+|.+|++
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 754 99999998887632 1222 2347778875 3455555 57899999985
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.22 E-value=1.1e-09 Score=121.98 Aligned_cols=246 Identities=8% Similarity=-0.031 Sum_probs=151.8
Q ss_pred EEECCCCCeeEEEEeccCCCc-----EEEEEEcCCCCEEEEEeCC---CeEEEEEccCCeEEEEEEeccCCCe--EEecc
Q 002389 673 MWDIKKQSAMLVWDVKEHRKA-----VTSFSLFEPGESLLSGSAD---KTIGVWQMVQRKLELIEVIATKEPI--RKLDT 742 (929)
Q Consensus 673 IWD~~~~~~~~i~~l~gH~~~-----Vtslafspdg~~LaSgs~D---gtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~ 742 (929)
.+|..++.. +..+..+... +.+++|+|||++|+.++.+ ..|.+||+.+++.... ........ ..|++
T Consensus 14 ~~d~~~g~~--~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 14 FVDSDTQVK--VTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-TEGKGDNTFGGFIST 90 (396)
T ss_dssp EECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-CCSSCBCTTTCEECT
T ss_pred eecCCCCcc--eEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-ecCCCCccccceECC
Confidence 346666643 4555554333 6788999999998766543 4788899988864332 22222212 45899
Q ss_pred CCCEEEEEecCCeEEEEeCCCc-eeeecc-CCC-eEE---EEE----------------e-CCE-EEEE-----ECCCcE
Q 002389 743 YGKTIFASTQGHRMKVIDSSRT-LKDIYR-SKG-IKS---MSV----------------V-QGK-IYIG-----CMDSSI 793 (929)
Q Consensus 743 ~g~~L~sgs~Dg~V~IWDl~~~-~~~l~~-~~~-V~s---la~----------------s-dg~-llsg-----s~Dg~I 793 (929)
+++.++.++.++.|++||+... ...+.. ... ... +++ + +++ ++.+ ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999999999999999998742 222222 111 111 111 1 222 1111 345678
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcC-CceEEEEEecCC-----CeEEEEECCCCCeEEEecCC-CCCeEEE
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSVEG-----SNIKEWRRHRKPQISIAPEK-GTTIQAM 866 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~dD-----gtI~IWDl~~~~~i~~l~~h-~~~V~sl 866 (929)
++||+.+++...+. .+...+..+.++| ++..++..+..+ ..|.+||..++......... ...+..+
T Consensus 171 ~~~d~~~g~~~~~~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 171 IKVDIETGELEVIH-------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp EEEETTTCCEEEEE-------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred EEEECCCCcEEeec-------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 99999886654331 2345678888998 665444333221 46889998777644433322 2368889
Q ss_pred EEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCCeEEEEE-cCCEEEEEE----------------CCCcEE
Q 002389 867 AVVEDFIYLNYNSSA-----SSLQIWLRGTQQKVGRISAGSKITSLLT-ANDIVLCGT----------------ETGLIK 924 (929)
Q Consensus 867 afSpdg~~LaSgS~D-----G~I~IWdl~sg~~i~tl~~h~~Vtsvs~-dg~~LaSgs----------------~DG~I~ 924 (929)
+|+|||++|+.++.+ +.|++||+.+++.............+++ +|+.+++++ .++.|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 999999988777544 4499999988876433322211133455 788888765 347899
Q ss_pred Eeec
Q 002389 925 GWIP 928 (929)
Q Consensus 925 IWdi 928 (929)
+||+
T Consensus 324 ~~d~ 327 (396)
T 3c5m_A 324 VLNT 327 (396)
T ss_dssp EEET
T ss_pred EEec
Confidence 9984
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.22 E-value=7.8e-09 Score=126.21 Aligned_cols=232 Identities=10% Similarity=-0.009 Sum_probs=150.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCe--------
Q 002389 689 EHRKAVTSFSLFEPGESLLSGSADK-----TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHR-------- 755 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs~Dg-----tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~-------- 755 (929)
+|...+.+++|||||++|+.++.++ +|++||+.+|+............-.+|+++|+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 4555788999999999988665543 899999999986543333333233578999999999987765
Q ss_pred --------EEEEeCCCce---eee-cc---CCCeEEEEEe-CCE-EEEEEC-----CCcEEEEEccC------Cc--cce
Q 002389 756 --------MKVIDSSRTL---KDI-YR---SKGIKSMSVV-QGK-IYIGCM-----DSSIQELAVSN------NV--ERE 805 (929)
Q Consensus 756 --------V~IWDl~~~~---~~l-~~---~~~V~sla~s-dg~-llsgs~-----Dg~I~iwDl~t------g~--~~~ 805 (929)
|++|++.... ..+ .. ...+..+.++ ||+ ++.++. +..+++||+.+ +. ...
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999987432 122 22 2236788887 776 555443 56899999986 42 222
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCe--EEEecCCCC--CeEEEEEecCCCEEEEE
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQ--ISIAPEKGT--TIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~~--i~~l~~h~~--~V~slafSpdg~~LaSg 878 (929)
+ ..+...+... +.+++..++..+.. .+.|.+||..++.. ...+..|.. .+..++|++++.++++.
T Consensus 282 l-------~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 282 L-------IDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp E-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred e-------eCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 2 2222333332 33443333222322 24799999887642 234444443 68889999888888999
Q ss_pred eCCCc--EEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEE-EEEC---CCcEEEeec
Q 002389 879 SSASS--LQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVL-CGTE---TGLIKGWIP 928 (929)
Q Consensus 879 S~DG~--I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~La-Sgs~---DG~I~IWdi 928 (929)
..|+. |++|+..+|+.+..+..+. .|.+++++ ++.++ +.++ .++|+.||+
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 88885 5666777888888888763 37777764 55444 3333 478888875
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.20 E-value=5.1e-09 Score=112.88 Aligned_cols=225 Identities=9% Similarity=0.050 Sum_probs=154.6
Q ss_pred EEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeC
Q 002389 685 WDVKEHRKAVTSFSLFEPGE-SLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~-~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
..+..+.....+++|+|+|+ .++++..++.|..||..++ .. ....+...+.+ ++++++.+++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE--EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE--EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 44555667788999999999 6788888999999999877 32 22233444554 5678887666666789999998
Q ss_pred C-Cceeeecc------CCCeEEEEEe-CCEEEEE-----E-------------CCCcEEEEEccCCccceeccccccccc
Q 002389 762 S-RTLKDIYR------SKGIKSMSVV-QGKIYIG-----C-------------MDSSIQELAVSNNVEREIKAPFKSWRL 815 (929)
Q Consensus 762 ~-~~~~~l~~------~~~V~sla~s-dg~llsg-----s-------------~Dg~I~iwDl~tg~~~~i~~~~~~~~~ 815 (929)
. +....+.. ...+..+++. +|.++++ + ..+.|..++.. +....+ ..
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-------~~ 169 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP-------IR 169 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE-------EC
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe-------ec
Confidence 4 44433321 2245678887 8887763 2 13456555554 332221 23
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECC-CCCe---EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH-RKPQ---ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~-~~~~---i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
+......+.++|++...+ ....++.|.+||.. .+.. ...+..+...+.+++++++|+++++. ++.|.+|+..
T Consensus 170 ~~~~~~gi~~s~dg~~lv-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLV-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp CCSSEEEEEECTTSCEEE-EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CCCCCccEEECCCCCEEE-EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 345678899999987764 34466899999986 4554 23333455567889999999977776 8899999986
Q ss_pred CcEEEEEeCCCCeEEEEEc---CCEEEEEECCCcEE
Q 002389 892 QQKVGRISAGSKITSLLTA---NDIVLCGTETGLIK 924 (929)
Q Consensus 892 g~~i~tl~~h~~Vtsvs~d---g~~LaSgs~DG~I~ 924 (929)
++.+..+..+..+++++|. ++.|++++.+|..+
T Consensus 246 g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 246 GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp SCEEEEEECSSCCCEEEEESTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCCCceeEEEECCCCCEEEEEcCCeEEE
Confidence 8888888877558888873 56888888876443
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.19 E-value=3e-09 Score=129.83 Aligned_cols=241 Identities=9% Similarity=0.071 Sum_probs=157.0
Q ss_pred CCCCCCEEEEEEe-CC-EEEEEECCC-----eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe----
Q 002389 646 HKCSGAVTALIYY-KG-LLCSGFSDG-----SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT---- 714 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaSGs~DG-----tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dgt---- 714 (929)
.+|...+..++|| |+ +|+.++.++ +|++||+.+++.... .+.. ..+.+++|+|||+.|+.++.|+.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccC--cccceEEEEeCCCEEEEEEECCccccc
Confidence 3566678999999 44 777665543 899999999864321 2222 23678999999999998888776
Q ss_pred ------------EEEEEccCCeEE--EEEEe-ccCCCeE--EeccCCCEEEEEec-----CCeEEEEeCCC---------
Q 002389 715 ------------IGVWQMVQRKLE--LIEVI-ATKEPIR--KLDTYGKTIFASTQ-----GHRMKVIDSSR--------- 763 (929)
Q Consensus 715 ------------IrIWDl~tg~~~--~~~~~-~h~~~V~--s~s~~g~~L~sgs~-----Dg~V~IWDl~~--------- 763 (929)
|++|++.+++.. ..... .+...+. .++++|++++.++. +..|++||+..
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 999999887632 11111 1233233 58999999888765 56899999864
Q ss_pred ceeeeccC-CCeEEEEEe-CCEEEEEECC----CcEEEEEccCCccceecccccccccCC-CCeEEEEEcCCceEEEEEe
Q 002389 764 TLKDIYRS-KGIKSMSVV-QGKIYIGCMD----SSIQELAVSNNVEREIKAPFKSWRLQS-KPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 764 ~~~~l~~~-~~V~sla~s-dg~llsgs~D----g~I~iwDl~tg~~~~i~~~~~~~~~~~-~~I~sl~~~~d~i~~~s~S 836 (929)
....+..+ ..+.....+ ++.++..+.. +.|.+||+.++...... .+..... ..+..+.+.++..+.++..
T Consensus 278 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK---VLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE---EEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce---eccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 24444432 233333223 4556665543 36999999876421100 1111112 3577788876665555554
Q ss_pred cCCC--eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE-e---CCCcEEEEECCCCc
Q 002389 837 VEGS--NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN-S---SASSLQIWLRGTQQ 893 (929)
Q Consensus 837 ~dDg--tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg-S---~DG~I~IWdl~sg~ 893 (929)
+++ .|.+||..++.....+..+...+..+.++|++..++.. + ..++|+.||+.+++
T Consensus 355 -~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 -HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 455 46778886777677777777889999999999766533 2 34789999998877
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.19 E-value=3.8e-10 Score=135.85 Aligned_cols=233 Identities=7% Similarity=-0.015 Sum_probs=158.5
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEEccCCeEEEEEEeccCCCeE-----------Ee--ccCCCE-EEE
Q 002389 686 DVKEHRKAVTSFSLFEPGESLLSG--SADKTIGVWQMVQRKLELIEVIATKEPIR-----------KL--DTYGKT-IFA 749 (929)
Q Consensus 686 ~l~gH~~~Vtslafspdg~~LaSg--s~DgtIrIWDl~tg~~~~~~~~~h~~~V~-----------s~--s~~g~~-L~s 749 (929)
.+.+|...|..++|++++-++++. +.++...||....+... .....+...+. .+ +|+|+. ++.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-ceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 456899999999999887667777 66889999996443322 22222332222 23 388998 776
Q ss_pred Eec-CCeEEEEeCC----Cceeeecc------CCCeEEEEEe-CCE-EEEEECC----------CcEEEEEccC------
Q 002389 750 STQ-GHRMKVIDSS----RTLKDIYR------SKGIKSMSVV-QGK-IYIGCMD----------SSIQELAVSN------ 800 (929)
Q Consensus 750 gs~-Dg~V~IWDl~----~~~~~l~~------~~~V~sla~s-dg~-llsgs~D----------g~I~iwDl~t------ 800 (929)
++. +..|.+|+.. +....+.. ...+..++|+ ||+ +++++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 654 5678888876 55555544 2347788998 776 6666665 5899999987
Q ss_pred Cccceecccccccc-cCCCCeEEEEEcCCceEEEEEecCC-------CeEEEEECC-CC---CeEEEecCCCCCeEEEEE
Q 002389 801 NVEREIKAPFKSWR-LQSKPINSLVVYKDWLYSASSSVEG-------SNIKEWRRH-RK---PQISIAPEKGTTIQAMAV 868 (929)
Q Consensus 801 g~~~~i~~~~~~~~-~~~~~I~sl~~~~d~i~~~s~S~dD-------gtI~IWDl~-~~---~~i~~l~~h~~~V~slaf 868 (929)
+....+ . .+...+..+.++|++.+++..+.++ ..|++||+. ++ .......+|...+..+.|
T Consensus 177 ~~~~~l-------~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 177 SAVREL-------SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp GGSEES-------SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CceeEE-------EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 443322 2 2345667788999998776554332 489999998 56 444455556788999999
Q ss_pred ecCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCCCC---------eEEEEE--cCCEEEEEECCCcEEEee
Q 002389 869 VEDFIYLNYNSSAS--SLQIWLRGTQQKVGRISAGSK---------ITSLLT--ANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 869 Spdg~~LaSgS~DG--~I~IWdl~sg~~i~tl~~h~~---------Vtsvs~--dg~~LaSgs~DG~I~IWd 927 (929)
+|||+++++++.|| .|++||..+++.......+.. +.+++| +++++++++. |.+++|.
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 99999888888888 566667667765443333321 345665 4778899988 9999994
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.17 E-value=1.6e-09 Score=132.02 Aligned_cols=231 Identities=9% Similarity=0.042 Sum_probs=147.2
Q ss_pred cCCCcEEEEEEcCCCCEEE-----EEeCCCeEEEEEccCCeEE-EEEEeccCCCeEEeccCCCEEEEEecCCe-------
Q 002389 689 EHRKAVTSFSLFEPGESLL-----SGSADKTIGVWQMVQRKLE-LIEVIATKEPIRKLDTYGKTIFASTQGHR------- 755 (929)
Q Consensus 689 gH~~~Vtslafspdg~~La-----Sgs~DgtIrIWDl~tg~~~-~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~------- 755 (929)
+|...+.+++|||||++|+ +|+.+.+|++||+.+|+.. ..........-.+|+++|+.++.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 5666799999999999988 4455678999999998753 11111111133468999999999988766
Q ss_pred ------EEEEeCCCce----eeecc--C-CCeEEEEEe-CCE-EEEEECCC----cEEEEEccCCccceecccccccccC
Q 002389 756 ------MKVIDSSRTL----KDIYR--S-KGIKSMSVV-QGK-IYIGCMDS----SIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 756 ------V~IWDl~~~~----~~l~~--~-~~V~sla~s-dg~-llsgs~Dg----~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
|++|++.... ..+.. + ..+..+.++ ||+ ++.++.++ .|++|+..++....+ ..+
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l-------~~~ 270 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-------VKG 270 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE-------EEC
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe-------ecC
Confidence 9999987432 12221 2 357788888 777 65555554 566665544433322 122
Q ss_pred CCCeEEEEEcCCceEEEEEec--CCCeEEEEECCCCCe---EEEecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 817 SKPINSLVVYKDWLYSASSSV--EGSNIKEWRRHRKPQ---ISIAPEK-GTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~--dDgtI~IWDl~~~~~---i~~l~~h-~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
.........+++. +.+.... .++.|.+||..++.. ......+ ...+..++|+ ++.++++...|+..++|...
T Consensus 271 ~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 271 VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2333444444445 4333321 247899999987653 3334333 4568888998 77888999999998888654
Q ss_pred -CCcEEEEEeCC--CCeEEEEE--cCCEEE-EEE---CCCcEEEeec
Q 002389 891 -TQQKVGRISAG--SKITSLLT--ANDIVL-CGT---ETGLIKGWIP 928 (929)
Q Consensus 891 -sg~~i~tl~~h--~~Vtsvs~--dg~~La-Sgs---~DG~I~IWdi 928 (929)
+++....+..+ +.|.++++ +++.++ +.+ ..++|++||+
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 46666666654 23666655 455555 332 3467888875
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.17 E-value=2.2e-08 Score=119.33 Aligned_cols=259 Identities=9% Similarity=-0.026 Sum_probs=174.5
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc--CCeEEEEEEeccCCCeE
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV--QRKLELIEVIATKEPIR 738 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~--tg~~~~~~~~~h~~~V~ 738 (929)
.+++...+++|.+||..+++. +.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.......+....-.
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v--~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEI--KTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCE--EEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeE--EEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 567778899999999998854 556643 3457799999999999999999999999995 66654333322222223
Q ss_pred Eec----cCCCEEEEEec-CCeEEEEeCCC--ceeeecc------------CCCeEEEEEe-C-CE-EEEEECCCcEEEE
Q 002389 739 KLD----TYGKTIFASTQ-GHRMKVIDSSR--TLKDIYR------------SKGIKSMSVV-Q-GK-IYIGCMDSSIQEL 796 (929)
Q Consensus 739 s~s----~~g~~L~sgs~-Dg~V~IWDl~~--~~~~l~~------------~~~V~sla~s-d-g~-llsgs~Dg~I~iw 796 (929)
.++ ++|++++++.. ++++.++|... ....+.. ...+..+..+ + .. ++....+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 577 58998888765 58999999762 2222221 1246666666 3 33 4445567999999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-----CCCCeEEEEEecC
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-----KGTTIQAMAVVED 871 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-----h~~~V~slafSpd 871 (929)
|........+. . .......+.+.+.+++.+.+..+..++.|.++|..++++...... |.+.-.. .++|+
T Consensus 326 d~~~~~~~~v~----~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~ 399 (567)
T 1qks_A 326 DYTDLNNLKTT----E-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPT 399 (567)
T ss_dssp ETTCSSEEEEE----E-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETT
T ss_pred ecCCCccceee----e-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCC
Confidence 98764322111 0 012456778889999988776665678999999999987655433 3221112 25887
Q ss_pred CCEE-EEEe-CCCcEEEEECCC-------CcEEEEEeCCCC---eEEEEEcCCEEEEEEC-------CCcEEEeec
Q 002389 872 FIYL-NYNS-SASSLQIWLRGT-------QQKVGRISAGSK---ITSLLTANDIVLCGTE-------TGLIKGWIP 928 (929)
Q Consensus 872 g~~L-aSgS-~DG~I~IWdl~s-------g~~i~tl~~h~~---Vtsvs~dg~~LaSgs~-------DG~I~IWdi 928 (929)
+..+ +++. .+++|.++|..+ .+.+.++...+. .....++++++.+... .++|.++|+
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 5444 5543 568999999888 778898886522 2335577888887663 358988875
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.17 E-value=1.3e-09 Score=132.98 Aligned_cols=240 Identities=7% Similarity=0.008 Sum_probs=153.3
Q ss_pred CCCCCCEEEEEEe-CC-EEE-----EEECCCeEEEEECCCCCeeEEEEeccCCCcE--EEEEEcCCCCEEEEEeCCCe--
Q 002389 646 HKCSGAVTALIYY-KG-LLC-----SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAV--TSFSLFEPGESLLSGSADKT-- 714 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~La-----SGs~DGtIrIWD~~~~~~~~i~~l~gH~~~V--tslafspdg~~LaSgs~Dgt-- 714 (929)
.+|...+..++|| |+ +|| +|+.+.+|++||+.+++.. . ..+...+ ..++|+|||+.|+.++.|+.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~--~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS--K--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC--S--SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc--C--CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence 3677789999999 44 666 3444578999999998641 0 1222223 67899999999999988876
Q ss_pred -----------EEEEEccCCeEE--EEEE-eccCCCeE--EeccCCCEEEEEecCC----eEEEEeCC-Cceeeecc-CC
Q 002389 715 -----------IGVWQMVQRKLE--LIEV-IATKEPIR--KLDTYGKTIFASTQGH----RMKVIDSS-RTLKDIYR-SK 772 (929)
Q Consensus 715 -----------IrIWDl~tg~~~--~~~~-~~h~~~V~--s~s~~g~~L~sgs~Dg----~V~IWDl~-~~~~~l~~-~~ 772 (929)
|++|++.++... .... ..+...+. .++++|++++.++.++ .|.+|+.. +....+.. ..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 272 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG 272 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC
Confidence 999999887621 2111 12223343 5789999988887665 67777654 33444433 33
Q ss_pred CeEEEEEeCCEEEEEEC----CCcEEEEEccCCccceecccccccccC-CCCeEEEEEcCCceEEEEEecCCCeEEEEEC
Q 002389 773 GIKSMSVVQGKIYIGCM----DSSIQELAVSNNVEREIKAPFKSWRLQ-SKPINSLVVYKDWLYSASSSVEGSNIKEWRR 847 (929)
Q Consensus 773 ~V~sla~sdg~llsgs~----Dg~I~iwDl~tg~~~~i~~~~~~~~~~-~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl 847 (929)
.+....+++|.++..+. ++.|..||+.++...... .+...+ ...+..+.+..+ .+.++.. .|+..++|..
T Consensus 273 ~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~l~~~~~~~~-~lv~~~~-~dg~~~l~~~ 347 (695)
T 2bkl_A 273 AKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWK---EIVPEDSSASLLSVSIVGG-HLSLEYL-KDATSEVRVA 347 (695)
T ss_dssp CCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCE---EEECCCSSCEEEEEEEETT-EEEEEEE-ETTEEEEEEE
T ss_pred ceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCe---EEecCCCCCeEEEEEEECC-EEEEEEE-ECCEEEEEEE
Confidence 45555567666555543 578999999876431100 111112 345677777744 3444444 5677777654
Q ss_pred C-CCCeEEEecCC-CCCeEEEEEecCCCEEEEEe----CCCcEEEEECCCCcE
Q 002389 848 H-RKPQISIAPEK-GTTIQAMAVVEDFIYLNYNS----SASSLQIWLRGTQQK 894 (929)
Q Consensus 848 ~-~~~~i~~l~~h-~~~V~slafSpdg~~LaSgS----~DG~I~IWdl~sg~~ 894 (929)
+ .+.....+..+ ...+..++++|++..++... ..++|++||+.+++.
T Consensus 348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 3 34445555554 56788889999998776332 347899999988774
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.15 E-value=7.1e-09 Score=112.01 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=159.1
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCe
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR-KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI 737 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~-~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V 737 (929)
++.|++++.|+.|.+||.++++. +.++..+. ..+.++.++|+|+.++ +.++.|..||. +|+.......+....+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 44799999999999999988854 77777665 4789999999999888 45788999999 7876555444323344
Q ss_pred E--EeccCCCEEEEEec-CCeEEEEeCCCcee-eecc-------CCCeEEEEEe-CCE-EEEEECCCcEEEEEccCCccc
Q 002389 738 R--KLDTYGKTIFASTQ-GHRMKVIDSSRTLK-DIYR-------SKGIKSMSVV-QGK-IYIGCMDSSIQELAVSNNVER 804 (929)
Q Consensus 738 ~--s~s~~g~~L~sgs~-Dg~V~IWDl~~~~~-~l~~-------~~~V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~ 804 (929)
. .+.++|+.+++.+. ++.+..+|..+... .+.. +.....+.+. +|. +++...++.|..||.. |+..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 4 35689999998887 77888888764322 2211 1123334444 666 6667778999999988 5542
Q ss_pred eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC------CCeEEEEEecCCCEEEEE
Q 002389 805 EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG------TTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~------~~V~slafSpdg~~LaSg 878 (929)
-.. .. ...+......+++...++.. +++.|..+|..+++.+..+..+. ..+..+...++|..+++.
T Consensus 159 w~~------~~-~~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 159 NSV------KL-SGTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEE------EC-SSCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEE------EC-CCCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 211 11 12344566677776666544 56789999999898877775332 247888999999999887
Q ss_pred eCC--------CcEEEEEC-CCCcEEEEEeCC
Q 002389 879 SSA--------SSLQIWLR-GTQQKVGRISAG 901 (929)
Q Consensus 879 S~D--------G~I~IWdl-~sg~~i~tl~~h 901 (929)
+.. +..+++.+ .+|+.+.++..+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred ccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 521 24466665 578888888766
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.15 E-value=2.3e-07 Score=98.68 Aligned_cols=266 Identities=9% Similarity=0.024 Sum_probs=175.2
Q ss_pred CCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 648 CSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 648 H~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
....+.+++++ ++ ..++...++.|.+||.. ++.. ...+..+...+.++++.++|...++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 45678899998 55 44444568999999988 5432 22334445679999999999877777778899999987 654
Q ss_pred EEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeec---cCCCeEEEEEe-CCEEEEEEC-CCcEEEEEc
Q 002389 726 ELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY---RSKGIKSMSVV-QGKIYIGCM-DSSIQELAV 798 (929)
Q Consensus 726 ~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~---~~~~V~sla~s-dg~llsgs~-Dg~I~iwDl 798 (929)
...........+.. +.+++...++...++.|..||..+....+. ....+..+++. +|.++.+.. ++.|..+|.
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 32222222334444 456676666655678999999875544332 23457888886 777776665 678999998
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE-EecCCCCCeEEEEEecCCCEEEE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS-IAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~-~l~~h~~~V~slafSpdg~~LaS 877 (929)
++....+.. ......+..+.+.+++...++.. .++.|..||. ++.... ....+...+.+++++++|+..++
T Consensus 175 -~g~~~~~~~-----~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 175 -TGKLEEYPL-----PTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp -TCCEEEEEC-----SSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred -CCcEEEeeC-----CCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 444332211 12245677888888776555433 4568999998 444333 23345567899999999998777
Q ss_pred EeCCCcEEEEECCCCcEEEEE--eCC-CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 878 NSSASSLQIWLRGTQQKVGRI--SAG-SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 878 gS~DG~I~IWdl~sg~~i~tl--~~h-~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
...++.|..|+. +++.. .+ ..+ ..+.+++.+ |++.+ ++.. .|..+++
T Consensus 247 ~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v-~~~~-~i~~~~p 298 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWF-ALKC-KIGKLNL 298 (300)
T ss_dssp ETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEE-ECSS-EEEEEEE
T ss_pred ccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEE-EccC-ceEEeCC
Confidence 767799999998 45433 33 222 347777776 55444 4444 6776664
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.14 E-value=1.7e-08 Score=108.78 Aligned_cols=233 Identities=13% Similarity=0.081 Sum_probs=154.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEE-------EeCCCeEEEEEccCCeEEEEEEe---ccCCCeEE--eccCCCEEEEEecCCe
Q 002389 688 KEHRKAVTSFSLFEPGESLLS-------GSADKTIGVWQMVQRKLELIEVI---ATKEPIRK--LDTYGKTIFASTQGHR 755 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~LaS-------gs~DgtIrIWDl~tg~~~~~~~~---~h~~~V~s--~s~~g~~L~sgs~Dg~ 755 (929)
...-....+++|+++|..+++ +..++.|.+||..+++....... ++...+.. +++++..++.++.++.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 344456789999999987777 57789999999888875432220 12234554 4455345666666668
Q ss_pred EEEEeCCCceeee-cc------CCCeEEEEEe-CCEEEEEECC----------------CcEEEEEccCCccceeccccc
Q 002389 756 MKVIDSSRTLKDI-YR------SKGIKSMSVV-QGKIYIGCMD----------------SSIQELAVSNNVEREIKAPFK 811 (929)
Q Consensus 756 V~IWDl~~~~~~l-~~------~~~V~sla~s-dg~llsgs~D----------------g~I~iwDl~tg~~~~i~~~~~ 811 (929)
|..||..+....+ .. ...+.++++. +|.++.++.. +.|..||.. ++....
T Consensus 94 l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~----- 167 (314)
T 1pjx_A 94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV----- 167 (314)
T ss_dssp EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-----
T ss_pred EEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-----
Confidence 9999987544433 21 1347788887 7887766543 456667654 332221
Q ss_pred ccccCCCCeEEEEEc----CCceEEEEEecCCCeEEEEECC-CCC-----eEEEecCCC-CCeEEEEEecCCCEEEEEeC
Q 002389 812 SWRLQSKPINSLVVY----KDWLYSASSSVEGSNIKEWRRH-RKP-----QISIAPEKG-TTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 812 ~~~~~~~~I~sl~~~----~d~i~~~s~S~dDgtI~IWDl~-~~~-----~i~~l~~h~-~~V~slafSpdg~~LaSgS~ 880 (929)
..+......+.++ +++..+......++.|.+||.. .+. ....+.++. ..+..++++++|.++++...
T Consensus 168 --~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 168 --DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp --EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred --ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 1112345778888 8875443333356799999976 343 223344444 56889999999999998888
Q ss_pred CCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEE-EEECCCcEEEeec
Q 002389 881 ASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVL-CGTETGLIKGWIP 928 (929)
Q Consensus 881 DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~La-Sgs~DG~I~IWdi 928 (929)
++.|.+||..+++.+..+..+ ..+.+++++ ++.|+ +...++.|..|++
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999999999888887777766 458888875 66455 4455678988874
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.12 E-value=2.8e-08 Score=108.85 Aligned_cols=227 Identities=10% Similarity=0.037 Sum_probs=141.9
Q ss_pred CCEEEEEEe-CC-EEEEEECC---C--eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----------
Q 002389 650 GAVTALIYY-KG-LLCSGFSD---G--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---------- 712 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs~D---G--tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---------- 712 (929)
..+..+.|+ ++ +|+.++.+ + .|.+||+.+++... +..+.. +.+++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~---l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK---ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE---EEEESE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE---EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 357889999 44 77766654 3 47888888775422 223334 9999999999998877643
Q ss_pred -----------------CeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecC---------CeEEEEeCCCcee
Q 002389 713 -----------------KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG---------HRMKVIDSSRTLK 766 (929)
Q Consensus 713 -----------------gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~D---------g~V~IWDl~~~~~ 766 (929)
..|.+||+.+++........ ...-..+++++ .++++..+ ..|.++| .+...
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~ 211 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEE 211 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceE
Confidence 57999999888752222222 22233678888 77766543 2455666 44443
Q ss_pred eeccCCCeEEEEEeCCE-EEEEECC--------CcEEEEEccCCccceecccccccccCCCCeEE-EEEcCCceEEEEEe
Q 002389 767 DIYRSKGIKSMSVVQGK-IYIGCMD--------SSIQELAVSNNVEREIKAPFKSWRLQSKPINS-LVVYKDWLYSASSS 836 (929)
Q Consensus 767 ~l~~~~~V~sla~sdg~-llsgs~D--------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~s-l~~~~d~i~~~s~S 836 (929)
.+..+..+..+ -++|+ ++.++.+ ..|.+|| +++...+ ...+...+.. +.++ ++ +.+..+
T Consensus 212 ~l~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l------~~~~~~~~~~~~~~s-dg-~~~~~~ 280 (347)
T 2gop_A 212 KMFEKVSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI------LDEVDRGVGQAKIKD-GK-VYFTLF 280 (347)
T ss_dssp EEEEEESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES------STTCCSEEEEEEEET-TE-EEEEEE
T ss_pred EeccCcceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEec------cccCCcccCCccEEc-Cc-EEEEEe
Confidence 33333334444 34776 6665543 3677888 4433222 2333456665 7788 77 444433
Q ss_pred cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcE-EEEECCCCcEEEEEeCC
Q 002389 837 VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSL-QIWLRGTQQKVGRISAG 901 (929)
Q Consensus 837 ~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I-~IWdl~sg~~i~tl~~h 901 (929)
+++.+++| ..++..... ..+...|.+++|+| .++++++.++.. .+|... ++ ...+..+
T Consensus 281 -~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~ 339 (347)
T 2gop_A 281 -EEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDY 339 (347)
T ss_dssp -ETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCT
T ss_pred -cCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccc
Confidence 57789999 776665443 44577899999999 677777777765 777766 54 4445544
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.09 E-value=1.7e-08 Score=106.49 Aligned_cols=227 Identities=9% Similarity=0.063 Sum_probs=150.0
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceee-e
Q 002389 693 AVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKD-I 768 (929)
Q Consensus 693 ~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~-l 768 (929)
...+++++++|+.++ +.+.++.|.+||..++..... .......+. ++.++++. +++..++.|..||..+.... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l-~v~~~~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTV-YVTDFNNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCE-EEEETTTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCE-EEEcCCCEEEEEeCCCceEeee
Confidence 678999999998666 447789999999766542211 111212223 45677774 44444889999998754332 2
Q ss_pred c--cCCCeEEEEEe-CCEEEEEE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEE
Q 002389 769 Y--RSKGIKSMSVV-QGKIYIGC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKE 844 (929)
Q Consensus 769 ~--~~~~V~sla~s-dg~llsgs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~I 844 (929)
. ....+..+++. +|.++.+. .++.|.+|+..+...... .......+..+.+.+++...++.. .++.|.+
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~ 175 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------PFTGLNDPDGVAVDNSGNVYVTDT-DNNRVVK 175 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------CCCSCCSCCCEEECTTCCEEEEEG-GGTEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------ccccCCCceeEEEeCCCCEEEEEC-CCCEEEE
Confidence 2 12568889987 77766654 578899997554322111 011223567788888776544433 4578999
Q ss_pred EECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEc--CCEEEEEECCC
Q 002389 845 WRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTA--NDIVLCGTETG 921 (929)
Q Consensus 845 WDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~d--g~~LaSgs~DG 921 (929)
||..++........+...+.+++++++|.++++...++.|.+|+............+ ..+.+++++ |+++++...++
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 998887655444444467899999999988888878899999998665443322223 448888876 77888888899
Q ss_pred cEEEeec
Q 002389 922 LIKGWIP 928 (929)
Q Consensus 922 ~I~IWdi 928 (929)
+|++|+.
T Consensus 256 ~v~~~~~ 262 (270)
T 1rwi_B 256 RVVKLTS 262 (270)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999975
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.08 E-value=1.5e-08 Score=106.99 Aligned_cols=232 Identities=9% Similarity=0.019 Sum_probs=152.6
Q ss_pred CEEEEEEe-CC-EEE-EEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 651 AVTALIYY-KG-LLC-SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 651 ~Vtsl~fs-~~-~La-SGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
...+++++ ++ +++ +.+.++.|.+||..+... ......+...+.+++++++|+.+++.. ++.|.+||..++....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--TVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc--ceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 67788997 44 444 336789999999876532 111123345688999999998666655 8899999987654322
Q ss_pred EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCceeeec---cCCCeEEEEEe-CCEEEEEE-CCCcEEEEEccC
Q 002389 728 IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTLKDIY---RSKGIKSMSVV-QGKIYIGC-MDSSIQELAVSN 800 (929)
Q Consensus 728 ~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~---~~~~V~sla~s-dg~llsgs-~Dg~I~iwDl~t 800 (929)
. .......... +.++++..++...++.|.+|+......... ....+.++++. +|+++.+. .++.|.+||..+
T Consensus 102 ~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 L-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp C-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred e-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 1 1122233443 567777666666778999998664322221 12357788887 77776655 468999999876
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~ 880 (929)
+...... ..+...+..+.+.+++...++.. .++.|..||..+.........+...+.+++++|+|+.+++...
T Consensus 181 ~~~~~~~------~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 181 NNQVVLP------FTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp CCEEECC------CSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred CceEeec------ccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 5432211 11225678899998875444433 5678999998776544433334467899999999998899889
Q ss_pred CCcEEEEECCCCc
Q 002389 881 ASSLQIWLRGTQQ 893 (929)
Q Consensus 881 DG~I~IWdl~sg~ 893 (929)
++.|++|+....+
T Consensus 254 ~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 254 NDRVVKLTSLEHH 266 (270)
T ss_dssp GTEEEEECCCGGG
T ss_pred CCEEEEEcCCCcc
Confidence 9999999976544
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=2.4e-07 Score=104.54 Aligned_cols=246 Identities=9% Similarity=-0.025 Sum_probs=154.8
Q ss_pred eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEec-------
Q 002389 670 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIA------- 732 (929)
Q Consensus 670 tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs----------~DgtIrIWDl~tg~~~~~~~~~------- 732 (929)
+|.+||..+++. +.++.....+ .++++|||++++.+. .++.|.+||..+.+.......+
T Consensus 48 ~v~v~D~~t~~~--~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSI--LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeE--EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 889999998753 5666554444 899999999988775 3688999999887654433222
Q ss_pred -cCCCeEEeccCCCEEEEEec--CCeEEEEeCCCc--eee-eccCCCeEEEEE-eC--CEEEEEECCCcEEEEEccCCcc
Q 002389 733 -TKEPIRKLDTYGKTIFASTQ--GHRMKVIDSSRT--LKD-IYRSKGIKSMSV-VQ--GKIYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 733 -h~~~V~s~s~~g~~L~sgs~--Dg~V~IWDl~~~--~~~-l~~~~~V~sla~-sd--g~llsgs~Dg~I~iwDl~tg~~ 803 (929)
....-..++++|++++++.. ++.|.++| ... ... +.... ++.+ ++ ..+++.+.||.+.++|. +++.
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 11112368999999999874 47899999 732 222 22122 2222 33 34677888999999999 6654
Q ss_pred ceecccccccccCCCCe-EEEEEcCC--ceEEEEEecCCCeEEEEECCCCC--eEEEecC----------CCCCeEEEEE
Q 002389 804 REIKAPFKSWRLQSKPI-NSLVVYKD--WLYSASSSVEGSNIKEWRRHRKP--QISIAPE----------KGTTIQAMAV 868 (929)
Q Consensus 804 ~~i~~~~~~~~~~~~~I-~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~~--~i~~l~~----------h~~~V~slaf 868 (929)
.........+ ....++ ....+.++ ..+..+ .++.+.+.|..++. ....+.. .......+++
T Consensus 199 ~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 199 AGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEEeccccc-cCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 3211000001 111221 11112222 222222 35688888886543 2222211 1122445788
Q ss_pred ecCCCEEEEEeC----------CCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEE-CCCcEEEeec
Q 002389 869 VEDFIYLNYNSS----------ASSLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 869 Spdg~~LaSgS~----------DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~-~LaSgs-~DG~I~IWdi 928 (929)
+||++.+..+.. ++.|.++|..+++.+.++..+....+++|+ |+ .++++. .++.|.+||.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 999988776543 358999999999999999877667776655 77 777777 5899999985
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.08 E-value=2.3e-07 Score=98.73 Aligned_cols=231 Identities=8% Similarity=0.065 Sum_probs=157.9
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCc
Q 002389 687 VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRT 764 (929)
Q Consensus 687 l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~ 764 (929)
+..+...+.++++.++|...++...++.|.+||.. ++............+.. +.+++...++...++.|..||..+.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~ 88 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI 88 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence 34455689999999999977776668999999988 65433222223344554 4566776666566789999998755
Q ss_pred eeeec---cCCCeEEEEEe-CCEEEEEE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 765 LKDIY---RSKGIKSMSVV-QGKIYIGC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 765 ~~~l~---~~~~V~sla~s-dg~llsgs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
...+. ....+..+++. +|.++.+. .++.|..||. ++....+.. ......+..+...+++...++.. .+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~-~~ 161 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-----PNKGSYPSFITLGSDNALWFTEN-QN 161 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-----SSTTCCEEEEEECTTSCEEEEET-TT
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-----CCCCCCCceEEEcCCCCEEEEeC-CC
Confidence 44433 23468888887 78877665 5788999998 544332211 12345678888888876555432 45
Q ss_pred CeEEEEECCCCCeEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--C-CCeEEEEEc--CCE
Q 002389 840 SNIKEWRRHRKPQISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA--G-SKITSLLTA--NDI 913 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~-l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~--h-~~Vtsvs~d--g~~ 913 (929)
+.|..||. ++..... ...+...+.+++++++|.+.++...++.|.+||. +++.. .+.. + ..+.+++++ |++
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCE
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCE
Confidence 78999999 6655433 3344567889999999998888777899999999 66643 3322 2 458888876 565
Q ss_pred EEEEECCCcEEEeec
Q 002389 914 VLCGTETGLIKGWIP 928 (929)
Q Consensus 914 LaSgs~DG~I~IWdi 928 (929)
.++...++.|..|++
T Consensus 239 ~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEeccCCceEEEECC
Confidence 555546788998874
No 197
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.07 E-value=9.5e-08 Score=104.30 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=148.0
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEc
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD----KTIGVWQM 720 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D----gtIrIWDl 720 (929)
+|...+.+++|+ ++ +++++..++.|.+||..+++.. .....+...+.+++|+|+|+.++++..+ +.|.+||.
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 556678999998 44 5667888999999999887642 2223567789999999999987777666 68999999
Q ss_pred cCCeEEEEEE-eccCCCeEE--eccCCCEEEEEec------CCeEEEEeCCC-ceeeec-cCCCeEEEEEe-CCE-EEEE
Q 002389 721 VQRKLELIEV-IATKEPIRK--LDTYGKTIFASTQ------GHRMKVIDSSR-TLKDIY-RSKGIKSMSVV-QGK-IYIG 787 (929)
Q Consensus 721 ~tg~~~~~~~-~~h~~~V~s--~s~~g~~L~sgs~------Dg~V~IWDl~~-~~~~l~-~~~~V~sla~s-dg~-llsg 787 (929)
.++....... ......+.. ++++++.+++... .+.|..||... ....+. ....+..++++ +|+ ++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE
Confidence 8876432221 122234443 5677776665543 35666676653 333332 23457788887 665 5554
Q ss_pred -ECCCcEEEEEccC-Cccce-eccc-ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCC--
Q 002389 788 -CMDSSIQELAVSN-NVERE-IKAP-FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGT-- 861 (929)
Q Consensus 788 -s~Dg~I~iwDl~t-g~~~~-i~~~-~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~-- 861 (929)
+.++.|.+||..+ +.... +... ...... ...+..+.+.+++.+.++.. .++.|.+||.+ +.....+..+..
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~-~~~~v~~~d~~-g~~~~~~~~~~~~~ 276 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMY-GQGRVLVFNKR-GYPIGQILIPGRDE 276 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEE-TTTEEEEECTT-SCEEEEEECTTGGG
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEc-CCCEEEEECCC-CCEEEEEEcCCCcc
Confidence 4578999999964 22111 1000 000111 13567788888876655543 46789999985 555555544432
Q ss_pred ----CeEEEEEecCCCEEEEEeCCC
Q 002389 862 ----TIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 862 ----~V~slafSpdg~~LaSgS~DG 882 (929)
.+.+++|+||++.|+.++.++
T Consensus 277 g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 277 GHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ccccCcceEEECCCCCEEEEEeCcc
Confidence 689999999987776555453
No 198
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.05 E-value=9.2e-08 Score=106.81 Aligned_cols=259 Identities=10% Similarity=0.105 Sum_probs=168.1
Q ss_pred EEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEec
Q 002389 653 TALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIA 732 (929)
Q Consensus 653 tsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~ 732 (929)
..+...++.++.++.||.|..+|..+++. +............... .+..++.++.++.+..+|..+|+........
T Consensus 97 ~~~~~~~~~v~v~~~~g~l~a~d~~tG~~--~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEKAQVYALNTSDGTV--AWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTTCCE--EEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred cCceEeCCEEEEEcCCCEEEEEECCCCCE--EEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 34455588999999999999999998864 3444332221111122 2457888889999999999999865544332
Q ss_pred cCCC----eEEeccCCCEEEEEecCCeEEEEeCCC-cee-eeccCCC-----------e-EEEEEeCCEEEEEECCCcEE
Q 002389 733 TKEP----IRKLDTYGKTIFASTQGHRMKVIDSSR-TLK-DIYRSKG-----------I-KSMSVVQGKIYIGCMDSSIQ 794 (929)
Q Consensus 733 h~~~----V~s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~-~l~~~~~-----------V-~sla~sdg~llsgs~Dg~I~ 794 (929)
.... .......+..+++++.++.+..+|... ... ....... + ......++.+++++.++.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 173 MPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp C-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred CCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 1110 011122356788888899999999862 221 1111100 1 12223478899999999999
Q ss_pred EEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-CCCCeEEEEEecCCC
Q 002389 795 ELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE-KGTTIQAMAVVEDFI 873 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~-h~~~V~slafSpdg~ 873 (929)
.+|..+|+.. |.........+....+.++..+ .++.+..+|..+++....... ....+..... .+.
T Consensus 253 ~~d~~tG~~~--------w~~~~~~~~~~~~~~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~ 319 (376)
T 3q7m_A 253 ALDLRSGQIM--------WKRELGSVNDFIVDGNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNG 319 (376)
T ss_dssp EEETTTCCEE--------EEECCCCEEEEEEETTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETT
T ss_pred EEECCCCcEE--------eeccCCCCCCceEECCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECC
Confidence 9999887643 2222333445555555555443 467899999999987665542 2222333333 356
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCC-CCeEE-EEEcCCEEEEEECCCcEEEeec
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAG-SKITS-LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h-~~Vts-vs~dg~~LaSgs~DG~I~IWdi 928 (929)
.|+.++.+|.++++|..+|+.+...... ..+.+ ....+..|+.++.||.|+.|+.
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 7888889999999999999999888763 33332 3445778999999999999974
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.03 E-value=2.6e-07 Score=110.08 Aligned_cols=272 Identities=11% Similarity=0.057 Sum_probs=175.2
Q ss_pred CCEEEEEEe-CC-EEEEEECCCeEEEEECC--CCCeeEEEEeccCCCcEEEEEEc----CCCCEEEEEe-CCCeEEEEEc
Q 002389 650 GAVTALIYY-KG-LLCSGFSDGSIKMWDIK--KQSAMLVWDVKEHRKAVTSFSLF----EPGESLLSGS-ADKTIGVWQM 720 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~--~~~~~~i~~l~gH~~~Vtslafs----pdg~~LaSgs-~DgtIrIWDl 720 (929)
..+..+.|+ ++ ++++++.|+.|.+||+. +.+ .+.++.... ....++|+ |||++++++. .+++|.|+|.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--EeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 356789998 44 88889999999999996 543 466665433 46789999 6999976655 5699999999
Q ss_pred cCCeEEEEEEec---------cCC-CeEEe--ccCCC-EEEEEecCCeEEEEeCCCc----eeeeccCCCeEEEEEe-CC
Q 002389 721 VQRKLELIEVIA---------TKE-PIRKL--DTYGK-TIFASTQGHRMKVIDSSRT----LKDIYRSKGIKSMSVV-QG 782 (929)
Q Consensus 721 ~tg~~~~~~~~~---------h~~-~V~s~--s~~g~-~L~sgs~Dg~V~IWDl~~~----~~~l~~~~~V~sla~s-dg 782 (929)
.+.+........ |.. .+..+ ++++. .++....+|.|.++|.... ...+........+.|+ +|
T Consensus 274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg 353 (567)
T 1qks_A 274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 353 (567)
T ss_dssp TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence 888765433321 111 23332 34333 5555567789999998742 2223334567788887 67
Q ss_pred E-EEEE-ECCCcEEEEEccCCccceeccc-ccccccCC-CCeEEEEEcCCce-EEEEEecCCCeEEEEECCC-------C
Q 002389 783 K-IYIG-CMDSSIQELAVSNNVEREIKAP-FKSWRLQS-KPINSLVVYKDWL-YSASSSVEGSNIKEWRRHR-------K 850 (929)
Q Consensus 783 ~-llsg-s~Dg~I~iwDl~tg~~~~i~~~-~~~~~~~~-~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~-------~ 850 (929)
+ ++++ ..++.|.++|..+++....... -+ ..|. ..+. + ++|++. ..++....+++|.++|... .
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~--~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQ--TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCc--CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 6 4444 4678999999998765332110 01 1111 1222 2 567633 3333333457999999887 5
Q ss_pred CeEEEecCCCCCeEEEEEecCCCEEEEEeC-------CCcEEEEECCCC-----c-EEEEEe---------CCCCeEEEE
Q 002389 851 PQISIAPEKGTTIQAMAVVEDFIYLNYNSS-------ASSLQIWLRGTQ-----Q-KVGRIS---------AGSKITSLL 908 (929)
Q Consensus 851 ~~i~~l~~h~~~V~slafSpdg~~LaSgS~-------DG~I~IWdl~sg-----~-~i~tl~---------~h~~Vtsvs 908 (929)
+.++.+......-..+..+|+++++..... .++|.++|+.+. . .+..+. ++..+..+.
T Consensus 430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (567)
T 1qks_A 430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE 509 (567)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence 667777655444345778999999988663 369999998876 2 223443 233488887
Q ss_pred Ec--CCEEEEEE-----CCCcEEEeec
Q 002389 909 TA--NDIVLCGT-----ETGLIKGWIP 928 (929)
Q Consensus 909 ~d--g~~LaSgs-----~DG~I~IWdi 928 (929)
|+ |+.+..+. .++.|.|+|.
T Consensus 510 ~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 510 FNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp ECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 76 77665543 3788999874
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.02 E-value=1.6e-07 Score=105.97 Aligned_cols=251 Identities=9% Similarity=0.018 Sum_probs=164.2
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEecc----
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIAT---- 733 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs----------~DgtIrIWDl~tg~~~~~~~~~h---- 733 (929)
++.|.+.|..+.+. +.++.....+ . ++++|||++++.++ .++.|.+||..+++.......+.
T Consensus 58 ~~~V~ViD~~t~~v--~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV--IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTTEE--EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCCeE--EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 67999999998853 6667655555 4 99999999987765 46789999999988655544332
Q ss_pred ----CCCeEEeccCCCEEEEEec--CCeEEEEeCCCc--eeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccC-Cc
Q 002389 734 ----KEPIRKLDTYGKTIFASTQ--GHRMKVIDSSRT--LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSN-NV 802 (929)
Q Consensus 734 ----~~~V~s~s~~g~~L~sgs~--Dg~V~IWDl~~~--~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~t-g~ 802 (929)
...-..++++|++++++.. ++.|.++|.... ..++.... . ...++ ...+++.+.||.+.++++.+ ++
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 1223478999999998864 689999999732 23332222 1 22334 44578899999999999876 44
Q ss_pred cceecccccccccCCCCeE-EEEE-cCCceEEEEEecCCCeEEEEECCCCCe--EEEec---------C-CCCCeEEEEE
Q 002389 803 EREIKAPFKSWRLQSKPIN-SLVV-YKDWLYSASSSVEGSNIKEWRRHRKPQ--ISIAP---------E-KGTTIQAMAV 868 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~-sl~~-~~d~i~~~s~S~dDgtI~IWDl~~~~~--i~~l~---------~-h~~~V~slaf 868 (929)
..... ...+.....++. ...+ .+++.+.. ...+|++++.|..++.. ..... + .......+++
T Consensus 212 v~~~~--~~~~~~~~~~~~~~~~~~~~dG~~~~--vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~ 287 (386)
T 3sjl_D 212 PEITH--TEVFHPEDEFLINHPAYSQKAGRLVW--PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 287 (386)
T ss_dssp CEEEE--CCCCSCTTSCBCSCCEEETTTTEEEE--EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred EEEee--cceeccccccccccceeEcCCCcEEE--EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeE
Confidence 32111 011111222222 1233 35564333 23578999999876642 11111 0 1123345778
Q ss_pred ecCCCEEEEEeC----------CCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEE-CCCcEEEeec
Q 002389 869 VEDFIYLNYNSS----------ASSLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 869 Spdg~~LaSgS~----------DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~-~LaSgs-~DG~I~IWdi 928 (929)
+|+++.+..... .+.|.+.|..+++.+.++..+..+++++++ ++ .|+++. .++.|.++|.
T Consensus 288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 999888776542 257999999999999999987778787764 65 666654 4899999985
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.99 E-value=1.7e-07 Score=107.09 Aligned_cols=230 Identities=10% Similarity=-0.007 Sum_probs=157.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCC--eEEEEeCCCce--ee
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH--RMKVIDSSRTL--KD 767 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg--~V~IWDl~~~~--~~ 767 (929)
.....++|+++|+.+++...++.|++||..++............. .+++++++.++++..++ .|..|+..... ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 467899999999977777778999999998887544333322223 67889999999988766 78888876322 22
Q ss_pred e----c-cCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccceecccccccccCC--CCeEEEEEcCC-ceEEEEEec
Q 002389 768 I----Y-RSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS--KPINSLVVYKD-WLYSASSSV 837 (929)
Q Consensus 768 l----~-~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~--~~I~sl~~~~d-~i~~~s~S~ 837 (929)
+ . ....+.+++++ ++.++++..++.|+.||..++....+... .. .+.. .|...+.++|+ +.+.++- .
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~-~g~~~~~P~~~ia~~p~~g~lyv~d-~ 286 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-EL-SGSLGTNPGPYLIYYFVDSNFYMSD-Q 286 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CC-CSCCCCSSCCEEEEETTTTEEEEEE-T
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cc-cCCCCCCccccEEEeCCCCEEEEEe-C
Confidence 2 2 33457788886 57788877788999999987653332100 00 1111 12238889984 4444443 3
Q ss_pred CCCeEEEEECCCCCeEEEecCCC---------------CCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCC
Q 002389 838 EGSNIKEWRRHRKPQISIAPEKG---------------TTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 838 dDgtI~IWDl~~~~~i~~l~~h~---------------~~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~~i~tl~~h 901 (929)
..+.|+.|+.+.. ...+.++. .....++++|+|.++++-+ .++.|+.|+..++.. .++.++
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~ 363 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ 363 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence 5679999997755 33333332 3578999999999888888 899999999877764 444433
Q ss_pred ----------------CCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 902 ----------------SKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 902 ----------------~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
....+++++ |.++++-..+++|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 237778876 557777777888988764
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.98 E-value=3.1e-07 Score=98.84 Aligned_cols=238 Identities=8% Similarity=0.011 Sum_probs=149.1
Q ss_pred CCEEEEEEe-CC-EEEE-------EECCCeEEEEECCCCCeeEEEE--eccCCCcEEEEEEcCC-CCEEEEEeCCCeEEE
Q 002389 650 GAVTALIYY-KG-LLCS-------GFSDGSIKMWDIKKQSAMLVWD--VKEHRKAVTSFSLFEP-GESLLSGSADKTIGV 717 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaS-------Gs~DGtIrIWD~~~~~~~~i~~--l~gH~~~Vtslafspd-g~~LaSgs~DgtIrI 717 (929)
....+++|+ ++ .+++ +..++.|.+||..+++...... ..++...+.+++++++ |+.++ ++.++.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEE
Confidence 456788997 44 4555 4778999999988776422111 0125567999999999 65444 444557899
Q ss_pred EEccCCeEEEE-EEec---cCCCeE--EeccCCCEEEEEecC---------------CeEEEEeCCCceeeecc-CCCeE
Q 002389 718 WQMVQRKLELI-EVIA---TKEPIR--KLDTYGKTIFASTQG---------------HRMKVIDSSRTLKDIYR-SKGIK 775 (929)
Q Consensus 718 WDl~tg~~~~~-~~~~---h~~~V~--s~s~~g~~L~sgs~D---------------g~V~IWDl~~~~~~l~~-~~~V~ 775 (929)
||.. ++.... .... ....+. .+.++++..++...+ +.|..||..+....+.. .....
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 175 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN 175 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc
Confidence 9988 764322 1111 111233 356777766665554 56777776644333322 23456
Q ss_pred EEEEe-----CC-EEEEE-ECCCcEEEEEcc-CCccceecccccccccCC-CCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 776 SMSVV-----QG-KIYIG-CMDSSIQELAVS-NNVEREIKAPFKSWRLQS-KPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 776 sla~s-----dg-~llsg-s~Dg~I~iwDl~-tg~~~~i~~~~~~~~~~~-~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
.++++ ++ .++.+ ..++.|.+||.. ++....... ...+..+. ..+..+.+.+++.+.++.. .++.|..||
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~l~v~~~-~~~~i~~~d 253 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV-WGHIPGTHEGGADGMDFDEDNNLLVANW-GSSHIEVFG 253 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE-EEECCCCSSCEEEEEEEBTTCCEEEEEE-TTTEEEEEC
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE-EEECCCCCCCCCCceEECCCCCEEEEEc-CCCEEEEEc
Confidence 67765 44 35555 457899999986 333211100 01111222 4567788888876665543 467899999
Q ss_pred CCCCCeEEEecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCC
Q 002389 847 RHRKPQISIAPEKGTTIQAMAVVEDFIYL-NYNSSASSLQIWLRGT 891 (929)
Q Consensus 847 l~~~~~i~~l~~h~~~V~slafSpdg~~L-aSgS~DG~I~IWdl~s 891 (929)
..++.....+..+...+.+++|+|+|++| ++...++.|..|+...
T Consensus 254 ~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 98776666666666789999999999955 4555668999999764
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.96 E-value=1.3e-07 Score=116.19 Aligned_cols=230 Identities=12% Similarity=0.019 Sum_probs=142.0
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCe--------
Q 002389 689 EHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHR-------- 755 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaSgs~D-----gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~-------- 755 (929)
+|...+.+++|||||++|+.++.+ .+|++||+.+|+............-.+|+++ +.++.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 344578899999999998876644 4699999999986443222221123468899 98888876554
Q ss_pred ------EEEEeCCCce----eeecc-C--CCeEEEEEe-CCE-EEEEECC-----CcEEEEEccCC--c-cceecccccc
Q 002389 756 ------MKVIDSSRTL----KDIYR-S--KGIKSMSVV-QGK-IYIGCMD-----SSIQELAVSNN--V-EREIKAPFKS 812 (929)
Q Consensus 756 ------V~IWDl~~~~----~~l~~-~--~~V~sla~s-dg~-llsgs~D-----g~I~iwDl~tg--~-~~~i~~~~~~ 812 (929)
|++|++.... ..+.. . ..+..+.++ ||+ ++..+.+ ..|++||+.++ . ...+.
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~----- 313 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI----- 313 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-----
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-----
Confidence 8899986322 22222 1 247788887 786 5555543 37999999876 3 22221
Q ss_pred cccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCC--CeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 002389 813 WRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRK--PQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIW 887 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~--~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IW 887 (929)
.+......... +++..++..+.. .+.|.+||..++ .......++...+..+.++ ++.++++...|+..+||
T Consensus 314 --~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 314 --PDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp --CSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred --CCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 12222233322 333333323322 357999998874 3444455555567778887 66788888899988887
Q ss_pred ECC-CCcEEEEEeCC--CCeEEEEEc--CCEEE-EEE---CCCcEEEeec
Q 002389 888 LRG-TQQKVGRISAG--SKITSLLTA--NDIVL-CGT---ETGLIKGWIP 928 (929)
Q Consensus 888 dl~-sg~~i~tl~~h--~~Vtsvs~d--g~~La-Sgs---~DG~I~IWdi 928 (929)
... +++....+..+ +.|..++++ ++.++ +.+ ..++|++||+
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 654 46667777643 347777764 55443 333 3478888874
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.92 E-value=1.9e-07 Score=100.69 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=139.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCce-eeeccC--CCeEE
Q 002389 702 PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTL-KDIYRS--KGIKS 776 (929)
Q Consensus 702 dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~-~~l~~~--~~V~s 776 (929)
.++.|++++.|+.|.+||..+|+............+. .+.++|+.++ +.++.|..||..+.. ..+... ..+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 4678999999999999999999876554443212233 4678998777 557889999986433 233322 34666
Q ss_pred EEEe-CCE-EEEEEC-CCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCe
Q 002389 777 MSVV-QGK-IYIGCM-DSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQ 852 (929)
Q Consensus 777 la~s-dg~-llsgs~-Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~ 852 (929)
..+. +|+ +++.+. ++.+..+|. +|+. ..+...... ..+......+...+++.+.++.. .++.|..||.+ ++.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~-~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI-ERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQL 157 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC-SSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC-CcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCE
Confidence 7765 777 444555 667777776 3332 222110000 01112333445667777777655 67899999998 777
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC----C---eEEEEE--cCCEEEEE
Q 002389 853 ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS----K---ITSLLT--ANDIVLCG 917 (929)
Q Consensus 853 i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~----~---Vtsvs~--dg~~LaSg 917 (929)
+..+..+ ..+.++.+.++|.++++++.++.|..+|..+|+.+.++..+. + +.++.. +|+++++.
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 7777654 446678889999999999988899999999999999987431 1 555553 47777666
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.90 E-value=1.1e-06 Score=99.05 Aligned_cols=235 Identities=10% Similarity=0.000 Sum_probs=147.0
Q ss_pred EEEEe-CC-EEEEEE----------CCCeEEEEECCCCCeeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeC--C
Q 002389 654 ALIYY-KG-LLCSGF----------SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGSA--D 712 (929)
Q Consensus 654 sl~fs-~~-~LaSGs----------~DGtIrIWD~~~~~~~~i~~l~gH-------~~~Vtslafspdg~~LaSgs~--D 712 (929)
.++++ ++ +++.+. .++.|.+||..+.+. +.++.-. ......++|+|||++|+.+.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 78888 44 666654 368899999987654 3433211 123457899999999988764 5
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeEEeccCC-CEEEEEecCCeEEEEeCCCcee-ee------ccCCCe-EEEEEe--C
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSRTLK-DI------YRSKGI-KSMSVV--Q 781 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g-~~L~sgs~Dg~V~IWDl~~~~~-~l------~~~~~V-~sla~s--d 781 (929)
++|.++| .+++.... .......+ .+.+.+ ..+++.+.||.+.++|..+... .. .....+ ....+. +
T Consensus 148 ~~v~viD-~t~~~~~~-~i~~~~~~-~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQ-LLSSPTCY-HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred CeEEEEE-CCCCEEeE-EcCCCceE-EEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecC
Confidence 7899999 98875433 02222222 233333 4566677889999998832221 11 111111 122233 4
Q ss_pred CEEEEEECCCcEEEEEccCCccceeccccccccc----------CCCCeEEEEEcCCceEEEEEec---------CCCeE
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRL----------QSKPINSLVVYKDWLYSASSSV---------EGSNI 842 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~----------~~~~I~sl~~~~d~i~~~s~S~---------dDgtI 842 (929)
+.++..+.++.+.++|+.++...... .|.. .......+.+++++..+..... .++.|
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~----~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKA----PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEee----eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 55555557889999999765322211 1110 0112333566766543333221 13579
Q ss_pred EEEECCCCCeEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEECCCCcEEEEE
Q 002389 843 KEWRRHRKPQISIAPEKGTTIQAMAVVEDFI-YLNYNS-SASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 843 ~IWDl~~~~~i~~l~~h~~~V~slafSpdg~-~LaSgS-~DG~I~IWdl~sg~~i~tl 898 (929)
.++|..+++.+..+.. .....+++|+|||+ .++++. .++.|.+||..+++.+.++
T Consensus 301 ~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999988777743 33588999999999 777776 5899999999999999884
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.89 E-value=3.1e-08 Score=112.10 Aligned_cols=179 Identities=14% Similarity=0.159 Sum_probs=130.4
Q ss_pred CEEEEEEe--CCEEEEEECCCeEEEEECCCCC---------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 002389 651 AVTALIYY--KGLLCSGFSDGSIKMWDIKKQS---------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQ 719 (929)
Q Consensus 651 ~Vtsl~fs--~~~LaSGs~DGtIrIWD~~~~~---------~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWD 719 (929)
+++.++++ .+++++|+.|+. ++|+++... ....... .+.+ |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68889998 669999999855 459875332 1111222 4667 999999 99999988 889999999
Q ss_pred ccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-CCEEEEEECCCcEEEEEc
Q 002389 720 MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl 798 (929)
+.+.. .......+..++.++.+....+++++.||.+.+||+...... .....|+|++|+ +| ++.|..||++++|+.
T Consensus 113 v~sl~-~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~-~~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 113 LEELS-EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK-QLAQNVTSFDVTNSQ-LAVLLKDRSFQSFAW 189 (388)
T ss_dssp SSSTT-CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-EEEESEEEEEECSSE-EEEEETTSCEEEEEE
T ss_pred chhhh-ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccc-cccCCceEEEEcCCc-eEEEEcCCcEEEEcC
Confidence 97754 223344566677776655556999999999999999833221 234679999999 55 788999999999998
Q ss_pred cCCc---cceecccccccc--cCCCCeEEEEEcCCceEEEEEecC
Q 002389 799 SNNV---EREIKAPFKSWR--LQSKPINSLVVYKDWLYSASSSVE 838 (929)
Q Consensus 799 ~tg~---~~~i~~~~~~~~--~~~~~I~sl~~~~d~i~~~s~S~d 838 (929)
..+. ...+..|...-. .|...+.++.+.++..+.+++.+.
T Consensus 190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence 8766 333433322211 357889999999999999988763
No 207
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.88 E-value=8.9e-07 Score=98.72 Aligned_cols=257 Identities=9% Similarity=0.081 Sum_probs=162.9
Q ss_pred EeCCEEEEEECCCeEEEEECCCCCeeEEEEeccC---------CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 657 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH---------RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 657 fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH---------~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
..++.++.++.++.|..||..+++. +...... ...+.+. ...++..++.++.++.|..+|..+|+...
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKE--IWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCE--EEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCce--eeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 3588899999999999999998864 3333321 2223222 22245678888999999999999998654
Q ss_pred EEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCC-Cce-eeeccCCCe------EEEEEeCCEEEEEECCCcEEEEEcc
Q 002389 728 IEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSS-RTL-KDIYRSKGI------KSMSVVQGKIYIGCMDSSIQELAVS 799 (929)
Q Consensus 728 ~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~-~~~-~~l~~~~~V------~sla~sdg~llsgs~Dg~I~iwDl~ 799 (929)
...... .........+..+++++.++.+..+|.. +.. ........+ ......++.+++++.++.+..+|..
T Consensus 128 ~~~~~~-~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 128 QTKVAG-EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp EEECSS-CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETT
T ss_pred EEeCCC-ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECC
Confidence 443321 1111112246688889999999999975 222 222222221 2333448889999999999999998
Q ss_pred CCccceecccccc---------cccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 002389 800 NNVEREIKAPFKS---------WRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 800 tg~~~~i~~~~~~---------~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSp 870 (929)
+|+..-....... ......+ ....+.++..+ .++.+..+|..+++....... .....+..
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~v~~~~---~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~-- 275 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTP----VVVNGVVFALA---YNGNLTALDLRSGQIMWKREL--GSVNDFIV-- 275 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCC----EEETTEEEEEC---TTSCEEEEETTTCCEEEEECC--CCEEEEEE--
T ss_pred CCcEEEEEecccCCCCcccccccccCCCc----EEECCEEEEEe---cCcEEEEEECCCCcEEeeccC--CCCCCceE--
Confidence 8765322110000 0000111 12233333322 467899999998887655432 23344443
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CC-CeEEEEEcCCEEEEEECCCcEEEeec
Q 002389 871 DFIYLNYNSSASSLQIWLRGTQQKVGRISA-GS-KITSLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 871 dg~~LaSgS~DG~I~IWdl~sg~~i~tl~~-h~-~Vtsvs~dg~~LaSgs~DG~I~IWdi 928 (929)
++..+..++.+|.+..+|..+|+.+..... +. .+.+....+..|+.++.+|.|++||+
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEET
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEEC
Confidence 466777788899999999999999877762 22 23444456788999999999999884
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.87 E-value=1.3e-07 Score=116.09 Aligned_cols=235 Identities=9% Similarity=0.034 Sum_probs=143.6
Q ss_pred CCCCCEEEEEEe-CC-EEEEEECC-----CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe-----
Q 002389 647 KCSGAVTALIYY-KG-LLCSGFSD-----GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT----- 714 (929)
Q Consensus 647 gH~~~Vtsl~fs-~~-~LaSGs~D-----GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dgt----- 714 (929)
+|...+..++|| |+ +|+.++.+ .+|++||+.+++.. .. ..+...+..++|+|| +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~--~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL--AD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE--EE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--Cc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 455578899999 44 67666543 46999999998742 21 112222357899999 98888877654
Q ss_pred ---------EEEEEccCCeEEEEEEe---ccCCCeE--EeccCCCEEEEEecCC-----eEEEEeCCCc----eeeecc-
Q 002389 715 ---------IGVWQMVQRKLELIEVI---ATKEPIR--KLDTYGKTIFASTQGH-----RMKVIDSSRT----LKDIYR- 770 (929)
Q Consensus 715 ---------IrIWDl~tg~~~~~~~~---~h~~~V~--s~s~~g~~L~sgs~Dg-----~V~IWDl~~~----~~~l~~- 770 (929)
|++|++.++........ .+...+. .++++|++++..+.++ .|++||+... ...+..
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 88999977652111111 1212233 5789999988887544 8999998643 444443
Q ss_pred CCCeEEEEEe-CCEEEEEEC----CCcEEEEEccCCc--cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEE
Q 002389 771 SKGIKSMSVV-QGKIYIGCM----DSSIQELAVSNNV--EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIK 843 (929)
Q Consensus 771 ~~~V~sla~s-dg~llsgs~----Dg~I~iwDl~tg~--~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~ 843 (929)
...+....++ ++.++..+. ++.|.+||+.++. ...+ ...+...+..+.+..+.+ .++.. .|+..+
T Consensus 316 ~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l------~~~~~~~l~~~~~~~~~l-v~~~~-~dg~~~ 387 (741)
T 1yr2_A 316 LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV------VPESKDNLESVGIAGNRL-FASYI-HDAKSQ 387 (741)
T ss_dssp SSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE------ECCCSSEEEEEEEEBTEE-EEEEE-ETTEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE------ecCCCCeEEEEEEECCEE-EEEEE-ECCEEE
Confidence 2334433345 555776665 3459999987742 2222 122334466666664443 33333 466666
Q ss_pred EEECC-CCCeEEEecC-CCCCeEEEEEecCCCEEEEE----eCCCcEEEEECCCCc
Q 002389 844 EWRRH-RKPQISIAPE-KGTTIQAMAVVEDFIYLNYN----SSASSLQIWLRGTQQ 893 (929)
Q Consensus 844 IWDl~-~~~~i~~l~~-h~~~V~slafSpdg~~LaSg----S~DG~I~IWdl~sg~ 893 (929)
+|..+ .+.....+.. +...+..+.++|+++.++.. ...++|++||+.+++
T Consensus 388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66433 3444555554 35678899999998866522 234789999998876
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.87 E-value=3.1e-06 Score=89.86 Aligned_cols=231 Identities=9% Similarity=0.063 Sum_probs=154.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCCce
Q 002389 688 KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSRTL 765 (929)
Q Consensus 688 ~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~~~ 765 (929)
......+.++++.++|...++...++.|.+||.. ++............+.. +.+++...++...++.|..||..+..
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~ 94 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF 94 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe
Confidence 3445678999999999987777778999999987 66443222222234554 45666665555557889999988554
Q ss_pred eeecc---CCCeEEEEEe-CCEEEEEEC-CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 766 KDIYR---SKGIKSMSVV-QGKIYIGCM-DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 766 ~~l~~---~~~V~sla~s-dg~llsgs~-Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
..+.. ...+.++++. +|.++.+.. ++.|..+|.. +....... ......+..+...+++...++.. .++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-----~~~~~~~~~i~~d~~g~l~v~~~-~~~ 167 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL-----PNKGSYPAFITLGSDNALWFTEN-QNN 167 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC-----SSTTCCEEEEEECTTSSEEEEET-TTT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC-----CCCCCCceeEEECCCCCEEEEec-CCC
Confidence 43332 3558888887 788776665 7789999887 44332211 11345678888888776544432 467
Q ss_pred eEEEEECCCCCeEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE-EeCC-CCeEEEEEc--CCEEE
Q 002389 841 NIKEWRRHRKPQISI-APEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR-ISAG-SKITSLLTA--NDIVL 915 (929)
Q Consensus 841 tI~IWDl~~~~~i~~-l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~t-l~~h-~~Vtsvs~d--g~~La 915 (929)
.|..||. ++..... ...+...+..++++++|.+.++....+.|.+|+. +++.... +..+ ..+.+++++ |++.+
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 8999998 4544332 2344567899999999988887777788999998 5554332 2222 448888876 56555
Q ss_pred EEECCCcEEEeec
Q 002389 916 CGTETGLIKGWIP 928 (929)
Q Consensus 916 Sgs~DG~I~IWdi 928 (929)
+...++.|..|++
T Consensus 246 ~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 246 TEWGANQIGRITN 258 (300)
T ss_dssp EETTTTEEEEECT
T ss_pred eccCCCeEEEECC
Confidence 5556688988874
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.86 E-value=5.2e-07 Score=101.89 Aligned_cols=241 Identities=10% Similarity=0.065 Sum_probs=151.8
Q ss_pred EEEe-CC-EEEEEE----------CCCeEEEEECCCCCeeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeC--CC
Q 002389 655 LIYY-KG-LLCSGF----------SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGSA--DK 713 (929)
Q Consensus 655 l~fs-~~-~LaSGs----------~DGtIrIWD~~~~~~~~i~~l~gH-------~~~Vtslafspdg~~LaSgs~--Dg 713 (929)
+.++ ++ +++.+. .++.|.+||..+.+. +.++.-. ......++|+|||++++.+.. ++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 8888 44 455443 468899999999864 4444211 123456899999999887763 68
Q ss_pred eEEEEEccCCeEEEEEEeccCCCeEEecc-CCCEEEEEecCCeEEEEeCCC--ceee-----ecc-CCCe-EEEEE--eC
Q 002389 714 TIGVWQMVQRKLELIEVIATKEPIRKLDT-YGKTIFASTQGHRMKVIDSSR--TLKD-----IYR-SKGI-KSMSV--VQ 781 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h~~~V~s~s~-~g~~L~sgs~Dg~V~IWDl~~--~~~~-----l~~-~~~V-~sla~--sd 781 (929)
.|.++|+.+++......... . ..+.| ..+.+++.+.||.+.+.+... .... +.. ...+ ....| .+
T Consensus 161 ~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d 237 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 237 (386)
T ss_dssp EEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred eEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence 99999999998654433211 1 12223 345666777788777777753 2211 111 1112 12355 38
Q ss_pred CEEEEEECCCcEEEEEccCCccceecccc--------cccccCCCCeEEEEEcCCceEEEE-Eec--------CCCeEEE
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPF--------KSWRLQSKPINSLVVYKDWLYSAS-SSV--------EGSNIKE 844 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~--------~~~~~~~~~I~sl~~~~d~i~~~s-~S~--------dDgtI~I 844 (929)
|+++..+.+|.++++|..++......+.. .-|...+ ...+.+++++..+.. ... .+++|.+
T Consensus 238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g--~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG--WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS--SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCC--cceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 88777888999999999775432221000 1111112 223444655433222 211 1257999
Q ss_pred EECCCCCeEEEecCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEECCCCcEEEEEeCCCC
Q 002389 845 WRRHRKPQISIAPEKGTTIQAMAVVEDFI-YLNYN-SSASSLQIWLRGTQQKVGRISAGSK 903 (929)
Q Consensus 845 WDl~~~~~i~~l~~h~~~V~slafSpdg~-~LaSg-S~DG~I~IWdl~sg~~i~tl~~h~~ 903 (929)
+|..+++.+..+... ..+.++++++|++ +|+++ ..++.|.++|..+++.+.++...+.
T Consensus 316 iD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 316 LDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp EETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred EECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 999999988776432 3688999999997 66554 4589999999999999999986644
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.85 E-value=7.1e-07 Score=102.29 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=160.2
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEec-c----
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIA-T---- 733 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs----------~DgtIrIWDl~tg~~~~~~~~~-h---- 733 (929)
+.|.++|..+.+. +.++.--..+ .++++|||++++.+. .++.|.++|..+++.......+ .
T Consensus 99 ~~VsVID~~t~~v--v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRI--LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEE--EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEE--EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 7999999998854 6666544555 899999999987765 4779999999998865544432 1
Q ss_pred ---CCCeEEeccCCCEEEEEec--CCeEEEEeCCCc--eeeeccCCCeEEEEEe--CCEEEEEECCCcEEEEEccCCccc
Q 002389 734 ---KEPIRKLDTYGKTIFASTQ--GHRMKVIDSSRT--LKDIYRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSNNVER 804 (929)
Q Consensus 734 ---~~~V~s~s~~g~~L~sgs~--Dg~V~IWDl~~~--~~~l~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~tg~~~ 804 (929)
...-..++++|++++++.. ++.|.+.|.... ...+.-... ...++ ...+++.+.||.+.+.+..+++..
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 1122368999999999874 578999998732 223322221 12223 334677888999988888554432
Q ss_pred eecccccccccCCCCe-EEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE--Eec---CC-------CCCeEEEEEecC
Q 002389 805 EIKAPFKSWRLQSKPI-NSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS--IAP---EK-------GTTIQAMAVVED 871 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I-~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~--~l~---~h-------~~~V~slafSpd 871 (929)
.... ..+.....++ ..+.+.+++......+ .++.+.+.|...+.... .+. .. ......++++||
T Consensus 253 ~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 253 VTNT--EVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp EEEC--CCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEee--eeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 1100 1112112221 1233455544333222 56789999986554221 000 00 011223789999
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEE-CCCcEEEeec
Q 002389 872 FIYLNYNSS----------ASSLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 872 g~~LaSgS~----------DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~-~LaSgs-~DG~I~IWdi 928 (929)
++.+..... ++.|.++|..+++.+.++..+...+++.++ |+ .++++. .++.|.|+|.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 887665532 357999999999999999877656666654 77 888888 5999999985
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.79 E-value=2.4e-06 Score=92.38 Aligned_cols=223 Identities=8% Similarity=0.108 Sum_probs=141.5
Q ss_pred CCCEEEEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 649 SGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 649 ~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
..---+..|+ ++ ++++...++.|..||..++.. ..+ .+...+.+++++|+|+.++ +. ++.|.+||..+++.
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~-~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRV-TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSA 85 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEE-ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEE-eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcE
Confidence 3445577887 34 567777889999999998753 222 3457899999999999554 44 56799999988875
Q ss_pred EEEEEeccC---CCeE--EeccCCCEEEEEec-----------CCeEEEEeCCCceeeecc-CCCeEEEEEe-CCE-EE-
Q 002389 726 ELIEVIATK---EPIR--KLDTYGKTIFASTQ-----------GHRMKVIDSSRTLKDIYR-SKGIKSMSVV-QGK-IY- 785 (929)
Q Consensus 726 ~~~~~~~h~---~~V~--s~s~~g~~L~sgs~-----------Dg~V~IWDl~~~~~~l~~-~~~V~sla~s-dg~-ll- 785 (929)
......... ..+. .++++|+..++... .+.|..++..+....... ......++++ +++ ++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 433322111 1123 35678875554422 234555554443333222 3446788887 665 54
Q ss_pred EEECCCcEEEEEc--cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCe
Q 002389 786 IGCMDSSIQELAV--SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTI 863 (929)
Q Consensus 786 sgs~Dg~I~iwDl--~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V 863 (929)
+.+.++.|..|++ .++....... ...+......+..+.+.+++.+.++.. .++.|..||..+++....+..+...+
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~-~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRS-VYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEE-EEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEE-EEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEEEEcCCCceEEEEEECCCCCc
Confidence 4556788999987 3443211100 001111234567788887776555443 56789999999888888887777789
Q ss_pred EEEEEe-cCCCEEEEEe
Q 002389 864 QAMAVV-EDFIYLNYNS 879 (929)
Q Consensus 864 ~slafS-pdg~~LaSgS 879 (929)
++++|. ||++.|..++
T Consensus 244 t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEESGGGCEEEEEE
T ss_pred eEEEEeCCCCCEEEEEc
Confidence 999998 8888765544
No 213
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.76 E-value=1.1e-10 Score=131.44 Aligned_cols=253 Identities=11% Similarity=0.029 Sum_probs=134.2
Q ss_pred EeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC
Q 002389 657 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEP 736 (929)
Q Consensus 657 fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~ 736 (929)
..++.+++|+.||.|+.||..+++. +..+.. +++.+..+..++..+++++.||.|+.||..+|+............
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCE--EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCE--EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 3578999999999999999999864 556654 556666666778788888899999999998887533221111111
Q ss_pred eE-E-eccCCCEEEEEecCCeEEEEeCCC-ce-eeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccc
Q 002389 737 IR-K-LDTYGKTIFASTQGHRMKVIDSSR-TL-KDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKS 812 (929)
Q Consensus 737 V~-s-~s~~g~~L~sgs~Dg~V~IWDl~~-~~-~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~ 812 (929)
+. + +...+..+++++.++.++.||... .. ..+.....+. .+..++.+++++.|+.++.||..+|+..-.
T Consensus 83 ~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~------ 155 (369)
T 2hz6_A 83 VQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADS-LSPSTSLLYLGRTEYTITMYDTKTRELRWN------ 155 (369)
T ss_dssp HTTCSCC-----CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCE------
T ss_pred cccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCccc-ccccCCEEEEEecCCEEEEEECCCCCEEEe------
Confidence 11 1 111456788888999999999872 22 2222222111 111356688999999999999998764211
Q ss_pred cccCCCCeEEEEEcCC----ceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEE-EEEecCCCEE----EEEeCCCc
Q 002389 813 WRLQSKPINSLVVYKD----WLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQA-MAVVEDFIYL----NYNSSASS 883 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d----~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~s-lafSpdg~~L----aSgS~DG~ 883 (929)
............++ +...+ .+ .++.++.||..+++.+..... ..++.. ..++++|... +.+ ++.
T Consensus 156 --~~~~~~~~~~~~~~~~~~~~v~~-~~-~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~ 228 (369)
T 2hz6_A 156 --ATYFDYAASLPEDDVDYKMSHFV-SN-GDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VET 228 (369)
T ss_dssp --EEEEEECCBCCCCCTTCCCCEEE-EE-TSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHH
T ss_pred --EecccccCccccCCccccceEEE-EC-CCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--ccc
Confidence 10000111111221 22222 23 578999999999987766543 334433 3445566432 122 455
Q ss_pred EEEEECCCCc----EEEEEeCCCCeEEEEEcCCEEEEEECCCcEEEee
Q 002389 884 LQIWLRGTQQ----KVGRISAGSKITSLLTANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 884 I~IWdl~sg~----~i~tl~~h~~Vtsvs~dg~~LaSgs~DG~I~IWd 927 (929)
++.+|..+|+ .+.++...+.+.+....+..++.++.||.++.++
T Consensus 229 l~~ld~~tG~~~~~~~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~ 276 (369)
T 2hz6_A 229 LRYLTFMSGEVGRITKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASP 276 (369)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCCCHHHHHHHSEEEECBEECSSCEECCE
T ss_pred eeeeehhcCCcccceeeeeccCccccccccccceEEEecccCCEEecC
Confidence 6667766666 4444433332221111245777788888887665
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.73 E-value=6.4e-06 Score=88.99 Aligned_cols=211 Identities=12% Similarity=0.057 Sum_probs=138.5
Q ss_pred cCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCCC-c
Q 002389 689 EHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSSR-T 764 (929)
Q Consensus 689 gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~~-~ 764 (929)
.+..-..+..|+|++.. +++...++.|..||..++.... ......+.+ +.++++. +++. ++.|.+||... .
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---VTMDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---EECSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---EeCCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCc
Confidence 34445668899996655 5666678999999998876422 223344554 5677884 4444 67899999863 3
Q ss_pred eeeecc------CCCeEEEEEe-CCEEEEEECC----------CcEEEEEccC-CccceecccccccccCCCCeEEEEEc
Q 002389 765 LKDIYR------SKGIKSMSVV-QGKIYIGCMD----------SSIQELAVSN-NVEREIKAPFKSWRLQSKPINSLVVY 826 (929)
Q Consensus 765 ~~~l~~------~~~V~sla~s-dg~llsgs~D----------g~I~iwDl~t-g~~~~i~~~~~~~~~~~~~I~sl~~~ 826 (929)
...+.. ...+..+++. +|+++.++.. ..-.+|.+.. +....+ .......+.+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~pngi~~s 157 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-------FDQVDISNGLDWS 157 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-------EEEESBEEEEEEC
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-------eeccccccceEEc
Confidence 333221 1237788887 8887776521 2234444432 222111 1123345788999
Q ss_pred CCceEEEEEecCCCeEEEEEC--CCCCeE-----EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 827 KDWLYSASSSVEGSNIKEWRR--HRKPQI-----SIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 827 ~d~i~~~s~S~dDgtI~IWDl--~~~~~i-----~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
+++..+......++.|..||. .++... ..+..+......++++++|.+.++...++.|..||..+|+.+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 988655444435678999986 455432 2233344567899999999988888888999999999999999998
Q ss_pred CC-CCeEEEEEcC
Q 002389 900 AG-SKITSLLTAN 911 (929)
Q Consensus 900 ~h-~~Vtsvs~dg 911 (929)
.+ ..+++++|.|
T Consensus 238 ~p~~~~t~~~f~g 250 (297)
T 3g4e_A 238 LPVDKTTSCCFGG 250 (297)
T ss_dssp CSSSBEEEEEEES
T ss_pred CCCCCceEEEEeC
Confidence 87 4599999863
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.73 E-value=1.2e-06 Score=98.55 Aligned_cols=245 Identities=9% Similarity=-0.060 Sum_probs=155.3
Q ss_pred eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCCeEEEEEEec-------
Q 002389 670 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS----------ADKTIGVWQMVQRKLELIEVIA------- 732 (929)
Q Consensus 670 tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs----------~DgtIrIWDl~tg~~~~~~~~~------- 732 (929)
+|.+.|..+.+. +.++.....+ .+.++|||++++.+. .+++|.+||..+++.......+
T Consensus 47 ~vsvID~~t~~v--~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVT--LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEE--EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeE--EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 788999998854 6677555556 799999999988776 4789999999999876555443
Q ss_pred -cCCCeEEeccCCCEEEEEec--CCeEEE--EeCCCceeeeccCCCeEEEEEe-CCEEEEEECCCcEEEEEccC-----C
Q 002389 733 -TKEPIRKLDTYGKTIFASTQ--GHRMKV--IDSSRTLKDIYRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSN-----N 801 (929)
Q Consensus 733 -h~~~V~s~s~~g~~L~sgs~--Dg~V~I--WDl~~~~~~l~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~t-----g 801 (929)
....-..++++|++++++.. ++.+.+ +|... ...+.....+ .+... +..+++.+.|+.+...|..+ +
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCce-EEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 22334578999999999874 467888 88865 3333222211 11112 33466677899988888876 3
Q ss_pred ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC--eEEEecC-------CC---CCeEEEEEe
Q 002389 802 VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP--QISIAPE-------KG---TTIQAMAVV 869 (929)
Q Consensus 802 ~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~--~i~~l~~-------h~---~~V~slafS 869 (929)
+...... ..+.....|. ....+..+.. .+ . +.+.+.|..++. .+..+.- +. .....++++
T Consensus 201 ~v~~~~t--~~i~vg~~P~---~~~~~~~~~~-vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 201 IVGAQCT--GAQNCSSQAA---QANYPGMLVW-AV-A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp ECCCCSC--TTSCBCSCCE---EETTTTEEEE-CB-S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred eEEEEee--eeeeCCCCcc---ccccCCEEEE-Ec-C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 3221100 1122223343 2333333222 22 3 678888886532 2221110 11 111226899
Q ss_pred cCCCEEEEEeC---------CCcEEEEECCCCcEEEEEeCCCCeEEEEEc--CC-EEEEEE-CCCcEEEeec
Q 002389 870 EDFIYLNYNSS---------ASSLQIWLRGTQQKVGRISAGSKITSLLTA--ND-IVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 870 pdg~~LaSgS~---------DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d--g~-~LaSgs-~DG~I~IWdi 928 (929)
||++.+..+.. ++.+.++|..+++.+.++..+....+++++ |+ .+++.. .++.|.++|.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 99988876532 235669999999999999877667777764 66 566666 5999999985
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.72 E-value=1.2e-06 Score=106.58 Aligned_cols=229 Identities=10% Similarity=0.030 Sum_probs=139.2
Q ss_pred cCCCcEEEEEEcCCCCEEEE-----EeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCC---------
Q 002389 689 EHRKAVTSFSLFEPGESLLS-----GSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH--------- 754 (929)
Q Consensus 689 gH~~~Vtslafspdg~~LaS-----gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg--------- 754 (929)
+|...+..++|||||++|+- |+.+.+|++||+.+|+.........+..-.+|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 46667889999999999773 333467999999999864443333322334688 999999888774
Q ss_pred ----eEEEEeCCCce---eee-ccC----CCeEEEEEe-CCE-EEE-EE---CCCcEEEEEccCCc--cceecccccccc
Q 002389 755 ----RMKVIDSSRTL---KDI-YRS----KGIKSMSVV-QGK-IYI-GC---MDSSIQELAVSNNV--EREIKAPFKSWR 814 (929)
Q Consensus 755 ----~V~IWDl~~~~---~~l-~~~----~~V~sla~s-dg~-lls-gs---~Dg~I~iwDl~tg~--~~~i~~~~~~~~ 814 (929)
.|++|++.... ..+ ... .....+.++ ||+ ++. .. .+..++++|+.++. ...+ .
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l-------~ 277 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV-------Q 277 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE-------E
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE-------e
Confidence 49999987322 122 222 236677887 777 333 32 23588999987753 2222 1
Q ss_pred cCCCCeEEEEEcCCceEEEEEecC--CCeEEEEECCCCCe--EEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEE
Q 002389 815 LQSKPINSLVVYKDWLYSASSSVE--GSNIKEWRRHRKPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSAS---SLQIW 887 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~i~~~s~S~d--DgtI~IWDl~~~~~--i~~l~~h~~~V~slafSpdg~~LaSgS~DG---~I~IW 887 (929)
.+.........+.+..+.+....+ .+.|..+|+.++.. .+.+..|...+. .|++++++|+....++ .|++|
T Consensus 278 ~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 278 GDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 222333333233333333333222 26899999887654 344556666665 8999999887766444 68899
Q ss_pred ECCCCcEEEEEeCC--CCeEEEEE--cCCEEEEEECC----CcEEEeec
Q 002389 888 LRGTQQKVGRISAG--SKITSLLT--ANDIVLCGTET----GLIKGWIP 928 (929)
Q Consensus 888 dl~sg~~i~tl~~h--~~Vtsvs~--dg~~LaSgs~D----G~I~IWdi 928 (929)
++.. .....+... +.+..+++ +++.++....+ ++|+.||+
T Consensus 356 d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 356 DYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp CTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred ECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 9874 445555533 33555554 45544433333 67887774
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.69 E-value=2.4e-07 Score=104.79 Aligned_cols=171 Identities=9% Similarity=0.079 Sum_probs=125.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe---------EEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRK---------LELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR 763 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~---------~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~ 763 (929)
+++.+++++....+++|+.|+ +++|++...+ ........+.. |+.+..+++.++++ .++.|++||+..
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchh
Confidence 688999999999999999885 5669875433 11112223445 77655588888888 889999999873
Q ss_pred cee--ee-ccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 764 TLK--DI-YRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 764 ~~~--~l-~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
... .. .....+.++.+....+++++.||.+.+||+.++..... ...+++++++|++. .++. .||
T Consensus 116 l~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~~----------~~~Vs~v~WSpkG~-~vg~--~dg 182 (388)
T 1xip_A 116 LSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL----------AQNVTSFDVTNSQL-AVLL--KDR 182 (388)
T ss_dssp TTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE----------EESEEEEEECSSEE-EEEE--TTS
T ss_pred hhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccccc----------cCCceEEEEcCCce-EEEE--cCC
Confidence 221 11 22445777776655688899999999999997654322 45799999999994 3333 578
Q ss_pred eEEEEECCCCCe--EEEe------c---CCCCCeEEEEEecCCCEEEEEe
Q 002389 841 NIKEWRRHRKPQ--ISIA------P---EKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 841 tI~IWDl~~~~~--i~~l------~---~h~~~V~slafSpdg~~LaSgS 879 (929)
++++|+..++.. ...+ . +|...|.++.|.+++.++++=+
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999888775 4444 2 4778999999999999998733
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.68 E-value=2.1e-06 Score=93.09 Aligned_cols=227 Identities=9% Similarity=0.066 Sum_probs=145.2
Q ss_pred EEeccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeC
Q 002389 685 WDVKEHRKAVTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
..+..+.....+..|+|+|+. ++++..++.|..|+. +++.... ......+. .++++|+.+++...++.|..|+.
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~--~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVL--LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEE--EESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEE--eCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 344445566788999999994 677778899999998 5543222 22233344 46677875555455678999998
Q ss_pred CCceeeecc------CCCeEEEEEe-CCEEEEE-----EC-------------CCcEEEEEccCCccceecccccccccC
Q 002389 762 SRTLKDIYR------SKGIKSMSVV-QGKIYIG-----CM-------------DSSIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 762 ~~~~~~l~~------~~~V~sla~s-dg~llsg-----s~-------------Dg~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
++....+.. ...+..+++. +|.++.. .. .+.|+.||..+++...+. .
T Consensus 115 ~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--------~ 186 (305)
T 3dr2_A 115 DGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--------D 186 (305)
T ss_dssp TSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--------E
T ss_pred CCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--------c
Confidence 755444322 1235678887 8887763 21 256777777665543321 2
Q ss_pred CCCeEEEEEcCCceEEEEEecC-----CCeEEEEECCCCCeE--EEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 817 SKPINSLVVYKDWLYSASSSVE-----GSNIKEWRRHRKPQI--SIA-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~d-----DgtI~IWDl~~~~~i--~~l-~~h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
......+.+++++..+...... .+.|..|+...+... ..+ .........++++++|++.++. .+ .|.+|+
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~ 264 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFD 264 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEEC
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEEC
Confidence 2345778899987644333322 268999997654321 111 1123345678999999965554 44 499999
Q ss_pred CCCCcEEEEEeCCCCeEEEEE--cCCEEEEEECCCcEEE
Q 002389 889 RGTQQKVGRISAGSKITSLLT--ANDIVLCGTETGLIKG 925 (929)
Q Consensus 889 l~sg~~i~tl~~h~~Vtsvs~--dg~~LaSgs~DG~I~I 925 (929)
. +++.+..+..+..+.+++| +++.|+.++.++..++
T Consensus 265 ~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 265 S-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp T-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred C-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 8 6788888877666777887 4778888888765444
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.63 E-value=2.1e-06 Score=104.67 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=142.5
Q ss_pred CCCCCCEEEEEEe-CC-EEEE-----EECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe----
Q 002389 646 HKCSGAVTALIYY-KG-LLCS-----GFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKT---- 714 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~-~LaS-----Gs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dgt---- 714 (929)
.+|...+..++|| |+ +||- |+.+.+|++||+.+++... ..+.+. ....++|+ ||+.|+.++.|+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-TPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-EEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-cccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 3567789999999 44 5653 2233579999999987422 122211 12567899 9999988887743
Q ss_pred ---------EEEEEccCCeEEEEEEe---c-cCCCeE--EeccCCCEEEEEec----CCeEEEEeCCC---ceeeeccC-
Q 002389 715 ---------IGVWQMVQRKLELIEVI---A-TKEPIR--KLDTYGKTIFASTQ----GHRMKVIDSSR---TLKDIYRS- 771 (929)
Q Consensus 715 ---------IrIWDl~tg~~~~~~~~---~-h~~~V~--s~s~~g~~L~sgs~----Dg~V~IWDl~~---~~~~l~~~- 771 (929)
|++|++.++........ . +...+. .++++|++++.... ++.|+++|+.. ....+...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 99999987653211121 2 222233 47899998866543 24899999863 34444432
Q ss_pred CCeEEEEEe-CCEEEEEEC----CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEE
Q 002389 772 KGIKSMSVV-QGKIYIGCM----DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKE 844 (929)
Q Consensus 772 ~~V~sla~s-dg~llsgs~----Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~I 844 (929)
........+ ++.++..+. .+.|..+|+.++...... .+..+...+. .+++++..++....+++ .|++
T Consensus 281 ~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~----~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 281 DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR----DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE----EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE----EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 233333233 666665443 357899999876541110 1111222222 44444433333332444 6889
Q ss_pred EECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcE
Q 002389 845 WRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA----SSLQIWLRGTQQK 894 (929)
Q Consensus 845 WDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D----G~I~IWdl~sg~~ 894 (929)
||..++........+...+..+.+++++..++....+ ++++.||+.+++.
T Consensus 355 ~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 355 FDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 9988665433333344567788888888876655444 8899999887764
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.59 E-value=2.2e-05 Score=86.11 Aligned_cols=210 Identities=10% Similarity=0.008 Sum_probs=135.6
Q ss_pred EEEEEEcCCCCE-EEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC-Cceeeec
Q 002389 694 VTSFSLFEPGES-LLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLKDIY 769 (929)
Q Consensus 694 Vtslafspdg~~-LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~l~ 769 (929)
..+..|+|++.. +++...++.|..||..+++.... .....+.+ +.++++.+++ + ++.|.+||.. +....+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---~~~~~v~~i~~~~dg~l~v~-~-~~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH---ALPFMGSALAKISDSKQLIA-S-DDGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---ECSSCEEEEEEEETTEEEEE-E-TTEEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE---ECCCcceEEEEeCCCeEEEE-E-CCCEEEEECCCCcEEEEe
Confidence 456789998655 66666789999999988764322 22345554 4567665554 4 3459999976 3333332
Q ss_pred c------CCCeEEEEEe-CCEEEEEECC-------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEE
Q 002389 770 R------SKGIKSMSVV-QGKIYIGCMD-------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASS 835 (929)
Q Consensus 770 ~------~~~V~sla~s-dg~llsgs~D-------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~ 835 (929)
. ...+..+.++ +|+++.++.+ +.|..++ +++...+. ........+.+++++..+...
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-------~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-------ADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-------EEESSEEEEEECTTSCEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-------CCCcccCCeEEcCCCCEEEEE
Confidence 1 1247788887 8887776542 4555555 44322221 112346688889888644333
Q ss_pred ecCCCeEEEEECC--CC-C-----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEE
Q 002389 836 SVEGSNIKEWRRH--RK-P-----QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITS 906 (929)
Q Consensus 836 S~dDgtI~IWDl~--~~-~-----~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vts 906 (929)
...++.|.+||.. ++ . ....+.........++++++|.+.++...++.|.+||. +++.+..+..+. .+++
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 3356799999975 55 3 12233334456788999999998888777889999998 678888887765 4899
Q ss_pred EEEc---CCEEEEEE
Q 002389 907 LLTA---NDIVLCGT 918 (929)
Q Consensus 907 vs~d---g~~LaSgs 918 (929)
++|+ ++.|+.++
T Consensus 276 ~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 276 PAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEESTTSCEEEEEE
T ss_pred EEEecCCCCEEEEEe
Confidence 9886 34554443
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.59 E-value=1.1e-05 Score=91.87 Aligned_cols=234 Identities=9% Similarity=-0.005 Sum_probs=147.6
Q ss_pred CCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEEccCCeE
Q 002389 650 GAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADK--TIGVWQMVQRKL 725 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~Dg--tIrIWDl~tg~~ 725 (929)
.....|+|+ ++ ++++...++.|++||..++... ..... ..... ++|+|+++.|+++..++ .|.+|+..++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~--~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT--TVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE--EEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE--Eeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 468899998 55 4555566799999999987532 22222 23333 89999999999888766 788888876543
Q ss_pred EEEE-Ee-c-cCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeec------cCCCe--E-EEEEe--CCEEEEEE-
Q 002389 726 ELIE-VI-A-TKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIY------RSKGI--K-SMSVV--QGKIYIGC- 788 (929)
Q Consensus 726 ~~~~-~~-~-h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~------~~~~V--~-sla~s--dg~llsgs- 788 (929)
.... .. . ...... ++++++..++++..++.|+.||......... ..... . .++++ ++.++.+.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 2111 00 1 122222 4667566777777788999999874322221 11112 2 88887 47766554
Q ss_pred CCCcEEEEEccCCccceeccc-cccc------ccCCCCeEEEEEcCCceEEEEEec-CCCeEEEEECCCCCeEEEecCC-
Q 002389 789 MDSSIQELAVSNNVEREIKAP-FKSW------RLQSKPINSLVVYKDWLYSASSSV-EGSNIKEWRRHRKPQISIAPEK- 859 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~-~~~~------~~~~~~I~sl~~~~d~i~~~s~S~-dDgtI~IWDl~~~~~i~~l~~h- 859 (929)
.++.|+.|+.........-.. ..-+ ...-.....+++.+++.+.++ .. .++.|+.||..++.. ..+.++
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva-d~~~~~~I~~~~~~~G~v-~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV-DGFKGYCLRKLDILDGYV-STVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE-ETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE-eCCCCCEEEEEECCCCEE-EEEeCCC
Confidence 577899998764311111000 0000 001234778999988765444 33 567999999777764 334333
Q ss_pred --------------CCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 860 --------------GTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 860 --------------~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
-.....++++++|.++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 245889999999988888888888888765
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.58 E-value=2.1e-05 Score=86.28 Aligned_cols=219 Identities=8% Similarity=0.034 Sum_probs=136.3
Q ss_pred CEEEEEEeC--C-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 651 AVTALIYYK--G-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 651 ~Vtsl~fs~--~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
-..+..|++ + .++++..++.|..||..+++. ..+ .+...+.+++|+|+|+.+++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK---TVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---EEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE---EEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 345677872 4 566777889999999988753 222 235679999999999877654 34 49999998887543
Q ss_pred EEEecc---CCCeE--EeccCCCEEEEEec------CCeEEEEeCCCceeeecc-CCCeEEEEEe-CCE-EEEE-ECCCc
Q 002389 728 IEVIAT---KEPIR--KLDTYGKTIFASTQ------GHRMKVIDSSRTLKDIYR-SKGIKSMSVV-QGK-IYIG-CMDSS 792 (929)
Q Consensus 728 ~~~~~h---~~~V~--s~s~~g~~L~sgs~------Dg~V~IWDl~~~~~~l~~-~~~V~sla~s-dg~-llsg-s~Dg~ 792 (929)
...... ...+. .++++|+..++... .+.|..++ .+....+.. ......++++ +|+ ++.+ +.++.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 322111 11233 35677875554432 25677777 544333322 2346788887 775 5444 45788
Q ss_pred EEEEEcc--CC-ccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 002389 793 IQELAVS--NN-VEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 793 I~iwDl~--tg-~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS 869 (929)
|.+||+. ++ ...... ....+......+..+...+++.+.++.. .++.|..||. .+.....+..+...+++++|+
T Consensus 203 I~~~d~~~~~Gl~~~~~~-~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAE-VFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEBCTTTCCBSSCCE-EEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred EEEEEcccccCCcccCce-EEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 9999986 44 221100 0001111234456788877776555443 4578999998 466666666677789999998
Q ss_pred -cCCCEEEEEe
Q 002389 870 -EDFIYLNYNS 879 (929)
Q Consensus 870 -pdg~~LaSgS 879 (929)
|++..|..++
T Consensus 280 g~d~~~L~vt~ 290 (326)
T 2ghs_A 280 GPDASRLLVTS 290 (326)
T ss_dssp STTSCEEEEEE
T ss_pred cCCCCEEEEEe
Confidence 8888765544
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.54 E-value=6.1e-06 Score=100.34 Aligned_cols=266 Identities=14% Similarity=0.106 Sum_probs=164.2
Q ss_pred eCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC----------cE-EEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 658 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK----------AV-TSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 658 s~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~----------~V-tslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
.++.++.++.++.|..+|..+++. +.++..... .+ ..+++ ++..++.++.|+.+..+|..+|+..
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNR--IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEE--EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 488888899999999999999864 555533211 01 12232 4668888999999999999999876
Q ss_pred EEEEeccC----CCeE-EeccCCCEEEEEec------CCeEEEEeCCC-cee-eeccC----------------------
Q 002389 727 LIEVIATK----EPIR-KLDTYGKTIFASTQ------GHRMKVIDSSR-TLK-DIYRS---------------------- 771 (929)
Q Consensus 727 ~~~~~~h~----~~V~-s~s~~g~~L~sgs~------Dg~V~IWDl~~-~~~-~l~~~---------------------- 771 (929)
........ ..+. +-...+..+++++. ++.|+.||... ... .+...
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 55443201 1111 11123556666654 68999999762 211 11110
Q ss_pred -----------CCeEEEEEe--CCEEEEEECCC-------------------cEEEEEccCCccceecc--ccccccc--
Q 002389 772 -----------KGIKSMSVV--QGKIYIGCMDS-------------------SIQELAVSNNVEREIKA--PFKSWRL-- 815 (929)
Q Consensus 772 -----------~~V~sla~s--dg~llsgs~Dg-------------------~I~iwDl~tg~~~~i~~--~~~~~~~-- 815 (929)
.....++++ .+.++.++.++ .|..+|..+|+..-... +...|..
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 001245554 56677776553 59999999887543211 1111211
Q ss_pred CCCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCC-----------CCe-------------------
Q 002389 816 QSKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKG-----------TTI------------------- 863 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-----------~~V------------------- 863 (929)
...++. +....++. -.+.....+|.++++|..+++.+....... .++
T Consensus 312 ~~~p~l-~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 312 TQPMIL-ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CSCCEE-EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred CCCcEE-EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 112222 22222331 222233477899999999998765443111 111
Q ss_pred -----EEEEEecCCCEEEEEeC-------------------------------------------CCcEEEEECCCCcEE
Q 002389 864 -----QAMAVVEDFIYLNYNSS-------------------------------------------ASSLQIWLRGTQQKV 895 (929)
Q Consensus 864 -----~slafSpdg~~LaSgS~-------------------------------------------DG~I~IWdl~sg~~i 895 (929)
..++|+|++.++++... .|.|..||..+|+.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 15788999888877543 278999999999999
Q ss_pred EEEeCCCCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 896 GRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 896 ~tl~~h~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
.++..+.++++ +..++..++.|+.||.+++||.
T Consensus 471 W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 471 WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred eecCCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 88876655443 5567889999999999999985
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.53 E-value=1.8e-05 Score=85.77 Aligned_cols=222 Identities=9% Similarity=0.066 Sum_probs=138.7
Q ss_pred CCCCEEEEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 648 CSGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 648 H~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
+........|+ ++ +++++..++.|..|+.. ++ ...+..+...+.+++++++|+.+++...++.|..|+.. ++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 34566788887 34 67788889999999984 43 34455566789999999999966665566889999986 65
Q ss_pred EEEEEEeccC---CCe--EEeccCCCEEEE----Eec-------------CCeEEEEeCC-CceeeeccCCCeEEEEEe-
Q 002389 725 LELIEVIATK---EPI--RKLDTYGKTIFA----STQ-------------GHRMKVIDSS-RTLKDIYRSKGIKSMSVV- 780 (929)
Q Consensus 725 ~~~~~~~~h~---~~V--~s~s~~g~~L~s----gs~-------------Dg~V~IWDl~-~~~~~l~~~~~V~sla~s- 780 (929)
.......... ..+ ..+.++|+..++ +.. .+.|..||.. +....+........++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~sp 197 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSP 197 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECT
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcC
Confidence 4322111111 112 246678876665 321 2567777774 333332233446788887
Q ss_pred CCE-EEEEECC------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 002389 781 QGK-IYIGCMD------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 781 dg~-llsgs~D------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
+++ ++.+... +.|..|++..+...... ............+...+++.+.++. .+.|.+||.+ +...
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~---~~~~~~~~~pdgi~~d~~G~lwv~~---~~gv~~~~~~-g~~~ 270 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRR---HFASVPDGLPDGFCVDRGGWLWSSS---GTGVCVFDSD-GQLL 270 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTEEEEEE---EEECCSSSCCCSEEECTTSCEEECC---SSEEEEECTT-SCEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCe---EEEECCCCCCCeEEECCCCCEEEec---CCcEEEECCC-CCEE
Confidence 665 7776655 68999998764311100 0001112234456777777654443 3459999985 4445
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 002389 854 SIAPEKGTTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg~~LaSgS~DG 882 (929)
..+..+. .+..++|+|+++.|..++.++
T Consensus 271 ~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 271 GHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred EEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 5554444 588999999999888877654
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.51 E-value=3.2e-06 Score=95.15 Aligned_cols=240 Identities=11% Similarity=-0.021 Sum_probs=149.3
Q ss_pred EEEEe-CC-EEEEEE----------CCCeEEEEECCCCCeeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeC--C
Q 002389 654 ALIYY-KG-LLCSGF----------SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGSA--D 712 (929)
Q Consensus 654 sl~fs-~~-~LaSGs----------~DGtIrIWD~~~~~~~~i~~l~gH-------~~~Vtslafspdg~~LaSgs~--D 712 (929)
.+.++ ++ +++.+. .+++|.+||..+.+. +.++.-+ ......++|+|||++++.+.. +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 68898 43 565554 378999999999865 5665432 123557899999999888864 4
Q ss_pred CeEEE--EEccCCeEEEEEEeccCCCeEEeccCCC-EEEEEecCCeEEEEeCCC----ceeee-------c-cCCCeEEE
Q 002389 713 KTIGV--WQMVQRKLELIEVIATKEPIRKLDTYGK-TIFASTQGHRMKVIDSSR----TLKDI-------Y-RSKGIKSM 777 (929)
Q Consensus 713 gtIrI--WDl~tg~~~~~~~~~h~~~V~s~s~~g~-~L~sgs~Dg~V~IWDl~~----~~~~l-------~-~~~~V~sl 777 (929)
..+.+ +|..+ .. ... ....+ .+.++++ .+++.+.||.+.+.|... ..+.. . ...+.
T Consensus 147 ~~v~V~~iD~~t--v~-~i~--v~~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--- 217 (368)
T 1mda_H 147 AAAGLSVPGASD--DQ-LTK--SASCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--- 217 (368)
T ss_dssp CEEEEEETTTEE--EE-EEE--CSSCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---
T ss_pred CeEEEEEEchhh--ce-EEE--CCCce-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---
Confidence 67888 99876 11 111 11111 1233333 444556677777777654 11111 1 11222
Q ss_pred EEe-CCEEEEEECCCcEEEEEccCCccceecccccccccC----------CCCeEEEEEcCCceEEE-EEecC-------
Q 002389 778 SVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQ----------SKPINSLVVYKDWLYSA-SSSVE------- 838 (929)
Q Consensus 778 a~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~----------~~~I~sl~~~~d~i~~~-s~S~d------- 838 (929)
... ++.++..+. +.+.+.|..++....+. .|... ......+.+++++..+. +..+.
T Consensus 218 ~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~----~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 218 QANYPGMLVWAVA-SSILQGDIPAAGATMKA----AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp EETTTTEEEECBS-SCCEEEECCSSCCEEEC----CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred ccccCCEEEEEcC-CEEEEEECCCCcceEEE----EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 244 566666666 99999999764322221 11100 01111256777754433 22212
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEc
Q 002389 839 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI-YLNYNS-SASSLQIWLRGTQQKVGRISAGSKITSLLTA 910 (929)
Q Consensus 839 DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~-~LaSgS-~DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~d 910 (929)
++.+.++|..+++.+..+.... ....++|+|||+ .+++.. .++.|.++|..+++.+.++..+...+.+++.
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred CCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence 2356699999998887765443 588999999998 566666 5999999999999999999987666666654
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.47 E-value=1.8e-05 Score=96.41 Aligned_cols=267 Identities=13% Similarity=0.097 Sum_probs=162.9
Q ss_pred eCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC----------cE-EEEEEcCCCCEEEEEeCCCeEEEEEccCCeEE
Q 002389 658 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK----------AV-TSFSLFEPGESLLSGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 658 s~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~----------~V-tslafspdg~~LaSgs~DgtIrIWDl~tg~~~ 726 (929)
.++.++.++.++.|..+|..+++. +..+..+.. .+ ..++. ++..++.++.|+.+..+|..+|+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRL--IWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCce--eEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 488899999999999999999864 555533221 01 11222 4567888999999999999999876
Q ss_pred EEEEec-cCC---CeEE-eccCCCEEEEEe------cCCeEEEEeCCC-ce-eeecc-----------------------
Q 002389 727 LIEVIA-TKE---PIRK-LDTYGKTIFAST------QGHRMKVIDSSR-TL-KDIYR----------------------- 770 (929)
Q Consensus 727 ~~~~~~-h~~---~V~s-~s~~g~~L~sgs------~Dg~V~IWDl~~-~~-~~l~~----------------------- 770 (929)
...... ... .+.+ -...+..+++++ .++.|..||... .. -.+..
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 554442 111 1110 011244555554 268899999762 21 11110
Q ss_pred --------CCCe-EEEEEe--CCEEEEEECCC-------------------cEEEEEccCCccceecc--cccccccCC-
Q 002389 771 --------SKGI-KSMSVV--QGKIYIGCMDS-------------------SIQELAVSNNVEREIKA--PFKSWRLQS- 817 (929)
Q Consensus 771 --------~~~V-~sla~s--dg~llsgs~Dg-------------------~I~iwDl~tg~~~~i~~--~~~~~~~~~- 817 (929)
+..+ ..+++. .+.++.++.++ .|..+|..+|+..-... +...|....
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 0001 145564 56688877765 39999999987543211 111222111
Q ss_pred CCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCC-C---------------------------------
Q 002389 818 KPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKG-T--------------------------------- 861 (929)
Q Consensus 818 ~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~--------------------------------- 861 (929)
.++.......++. -.+.....+|.++++|..+++++....-.. .
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 1221122222332 122233477899999999998763221100 0
Q ss_pred -----CeEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEECCC
Q 002389 862 -----TIQAMAVVEDFIYLNYNSS---------------------------------------------ASSLQIWLRGT 891 (929)
Q Consensus 862 -----~V~slafSpdg~~LaSgS~---------------------------------------------DG~I~IWdl~s 891 (929)
.-..++|+|+..++++.+. +|.|+.||..+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 0123788998887776532 37899999999
Q ss_pred CcEEEEEeCCCCeE--EEEEcCCEEEEEECCCcEEEeec
Q 002389 892 QQKVGRISAGSKIT--SLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 892 g~~i~tl~~h~~Vt--svs~dg~~LaSgs~DG~I~IWdi 928 (929)
|+.+.++..+.++. .+...+..+++|+.||.++.||.
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEEC
Confidence 99998888775543 35567889999999999999984
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.47 E-value=0.00023 Score=87.73 Aligned_cols=270 Identities=13% Similarity=0.147 Sum_probs=172.3
Q ss_pred EEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 002389 652 VTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 652 Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
|.++... ++.+..|+.++.|..||..+++..... ...+...|.++...++|... .|+.++-+..||..+++......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVI-PILGTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEec-CCCCCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeec
Confidence 8888887 777777887766899998876542211 11235678999888777644 45544458899988776433221
Q ss_pred ec------cCCCeEEeccC-CCEEEEEecCCeEEEEeCCCc-eeeec---------cCCCeEEEEEe-CCEEEEEECCCc
Q 002389 731 IA------TKEPIRKLDTY-GKTIFASTQGHRMKVIDSSRT-LKDIY---------RSKGIKSMSVV-QGKIYIGCMDSS 792 (929)
Q Consensus 731 ~~------h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~~-~~~l~---------~~~~V~sla~s-dg~llsgs~Dg~ 792 (929)
.. ....|.++..+ ...+..|+.+ .|.+||.... ...+. ....|.++... +|.++.|+.++-
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~G 331 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGG 331 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSC
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCC
Confidence 11 12457776543 4456667665 6888987632 22221 13458888887 888999999999
Q ss_pred EEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC--------CCCCeE
Q 002389 793 IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--------KGTTIQ 864 (929)
Q Consensus 793 I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~--------h~~~V~ 864 (929)
+..|+..++...........-......|.++...+++..-++. .++-+..||..++........ ....|.
T Consensus 332 l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt--~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 332 LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT--NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEE--SSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE--CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 9999987654333221100011234568888888776655544 355699999887765443211 235799
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC------CCCeEEEEEcC-CEEEEEECCCcEEEeec
Q 002389 865 AMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA------GSKITSLLTAN-DIVLCGTETGLIKGWIP 928 (929)
Q Consensus 865 slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~------h~~Vtsvs~dg-~~LaSgs~DG~I~IWdi 928 (929)
++...++|..|..|+.++-+..||..+++.. .+.. ...|.++..+. ..|..|+.+| +.+|++
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~G-l~~~~~ 478 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTLSA-LVRFNP 478 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEESSC-EEEEET
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEecCc-eeEEeC
Confidence 9999999985666777778999998887643 3331 23488988872 3455566655 766764
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.45 E-value=1.6e-05 Score=91.02 Aligned_cols=238 Identities=9% Similarity=0.042 Sum_probs=145.8
Q ss_pred EEEEe-CC-EEEEEE----------CCCeEEEEECCCCCeeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeC--C
Q 002389 654 ALIYY-KG-LLCSGF----------SDGSIKMWDIKKQSAMLVWDVKEH-------RKAVTSFSLFEPGESLLSGSA--D 712 (929)
Q Consensus 654 sl~fs-~~-~LaSGs----------~DGtIrIWD~~~~~~~~i~~l~gH-------~~~Vtslafspdg~~LaSgs~--D 712 (929)
.+.++ ++ +++.+. .++.|.++|..+.+. +.++.-- ......+.|+|||++++.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 78888 44 555544 477999999998864 4444211 123457899999999888764 6
Q ss_pred CeEEEEEccCCeEEEEEEeccCCCeEEeccCC-CEEEEEecCCeEEEEeCCC-cee-----eeccC-CC-eEEEEEe-C-
Q 002389 713 KTIGVWQMVQRKLELIEVIATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSR-TLK-----DIYRS-KG-IKSMSVV-Q- 781 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g-~~L~sgs~Dg~V~IWDl~~-~~~-----~l~~~-~~-V~sla~s-d- 781 (929)
++|.+.|+.+++.......+.. ..+.+++ ..+++.+.||.+.+.+... ... .+... .. ...+.+. +
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred CeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 8899999999886544332211 1222322 4455566677666666531 111 11111 11 1123344 3
Q ss_pred CEEEEEECCCcEEEEEccCCccceeccccccc-----c--cCCCCeEEEEEcCCceEEEEEec---------CCCeEEEE
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSW-----R--LQSKPINSLVVYKDWLYSASSSV---------EGSNIKEW 845 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~-----~--~~~~~I~sl~~~~d~i~~~s~S~---------dDgtI~IW 845 (929)
+.++..+..+.+.+.|..++....+.. .... . ........+.+++++..+..... .+++|.++
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~-~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAP-IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCC-EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeee-eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 446666778899999987654322110 0000 0 00011112466766543322211 12579999
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEECCCCcEEEEE
Q 002389 846 RRHRKPQISIAPEKGTTIQAMAVVEDFI-YLNYNS-SASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 846 Dl~~~~~i~~l~~h~~~V~slafSpdg~-~LaSgS-~DG~I~IWdl~sg~~i~tl 898 (929)
|..+.+.+..+... ....+++|+|||+ ++++.. .++.|.++|..+++.+.++
T Consensus 356 D~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 356 NAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999988877533 2578999999999 888877 5999999999999999998
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.42 E-value=4.4e-05 Score=92.98 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=153.8
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEecc--CCCcEEEEEEcC---CCCEEEEEe------CCCeEEEEEccCC
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKE--HRKAVTSFSLFE---PGESLLSGS------ADKTIGVWQMVQR 723 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~g--H~~~Vtslafsp---dg~~LaSgs------~DgtIrIWDl~tg 723 (929)
+.+.++.++.++.||.|..+|..+++. +..+.. +......+..+| ++ .++.++ .||.|..||..+|
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~--~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQR--AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCE--EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCE--eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCC
Confidence 345688999999999999999999875 444432 111111111112 44 444443 3789999999999
Q ss_pred eEEEEEEeccCC--------------------------------CeEEeccCCCEEEEEecCCe----------------
Q 002389 724 KLELIEVIATKE--------------------------------PIRKLDTYGKTIFASTQGHR---------------- 755 (929)
Q Consensus 724 ~~~~~~~~~h~~--------------------------------~V~s~s~~g~~L~sgs~Dg~---------------- 755 (929)
+........... ...++++.++.+++++.++.
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 876554321100 12346677888998887764
Q ss_pred ---EEEEeCCC-cee-eecc--C--------CCeEEEEEe-CCE----EEEEECCCcEEEEEccCCccceecccc-cccc
Q 002389 756 ---MKVIDSSR-TLK-DIYR--S--------KGIKSMSVV-QGK----IYIGCMDSSIQELAVSNNVEREIKAPF-KSWR 814 (929)
Q Consensus 756 ---V~IWDl~~-~~~-~l~~--~--------~~V~sla~s-dg~----llsgs~Dg~I~iwDl~tg~~~~i~~~~-~~~~ 814 (929)
|..||... ... .+.. + ......... +|+ ++.++.+|.++++|..+|+........ ..|.
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 89999872 221 1111 1 111112222 553 777889999999999998764211000 0010
Q ss_pred c---------------------C-----------CCCeEEEEEcCCceEEEEE-e-------------------------
Q 002389 815 L---------------------Q-----------SKPINSLVVYKDWLYSASS-S------------------------- 836 (929)
Q Consensus 815 ~---------------------~-----------~~~I~sl~~~~d~i~~~s~-S------------------------- 836 (929)
. . ...-..++++|+...+... .
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 0 0 0001113444432211111 0
Q ss_pred -----------------c-CCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 002389 837 -----------------V-EGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI 898 (929)
Q Consensus 837 -----------------~-dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl 898 (929)
+ .+|.++.||..+++.+-....+.. +..-.++..+..++.|+.||.++.||.++|+.+.++
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceee
Confidence 0 137899999999998766655433 333466677889999999999999999999999999
Q ss_pred eCCCCeEE--E--EEcCC-EEEEEE
Q 002389 899 SAGSKITS--L--LTAND-IVLCGT 918 (929)
Q Consensus 899 ~~h~~Vts--v--s~dg~-~LaSgs 918 (929)
+.++.+.+ + ..+|+ ++++.+
T Consensus 513 ~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 513 PAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eCCCCcccCceEEEECCEEEEEEEe
Confidence 86643221 3 45676 444443
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.42 E-value=2e-05 Score=95.88 Aligned_cols=256 Identities=12% Similarity=0.117 Sum_probs=154.1
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccC-C----CcEEEEEEcCCCCEEEEEeC------CCeEEEEEccCC
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH-R----KAVTSFSLFEPGESLLSGSA------DKTIGVWQMVQR 723 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH-~----~~Vtslafspdg~~LaSgs~------DgtIrIWDl~tg 723 (929)
+++.++.++.++.|+.|..+|..+++. +..+..+ . ..+++--.. .+..++.++. +|.|+.||..+|
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~--~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKE--VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCE--EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCE--EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCC
Confidence 455688999999999999999999864 5555443 1 122211111 2345555543 799999999999
Q ss_pred eEEEEEEeccCC---------------------------------CeEEeccCCCEEEEEecCC----------------
Q 002389 724 KLELIEVIATKE---------------------------------PIRKLDTYGKTIFASTQGH---------------- 754 (929)
Q Consensus 724 ~~~~~~~~~h~~---------------------------------~V~s~s~~g~~L~sgs~Dg---------------- 754 (929)
+........... ...++++.++.++.++.++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 876554432111 1124567788888887664
Q ss_pred ---eEEEEeCCC-cee-eecc--C--------CCeEEEEEe-CC---E-EEEEECCCcEEEEEccCCccceecccc-ccc
Q 002389 755 ---RMKVIDSSR-TLK-DIYR--S--------KGIKSMSVV-QG---K-IYIGCMDSSIQELAVSNNVEREIKAPF-KSW 813 (929)
Q Consensus 755 ---~V~IWDl~~-~~~-~l~~--~--------~~V~sla~s-dg---~-llsgs~Dg~I~iwDl~tg~~~~i~~~~-~~~ 813 (929)
.|..+|... ... .+.. + .....+... +| . ++.++.+|.++++|..+|+........ ..|
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 488888762 211 1111 1 111222222 55 3 778899999999999998763221100 000
Q ss_pred c----cCCCCe------------------------EEEEEcCCceEE-EEEe----------------------------
Q 002389 814 R----LQSKPI------------------------NSLVVYKDWLYS-ASSS---------------------------- 836 (929)
Q Consensus 814 ~----~~~~~I------------------------~sl~~~~d~i~~-~s~S---------------------------- 836 (929)
. ....++ ..++++|+...+ +...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 0 000011 134445442222 2111
Q ss_pred -------------cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Q 002389 837 -------------VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK 903 (929)
Q Consensus 837 -------------~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~ 903 (929)
+..+.|..||..+++.+-... +..++....+..++..++.++.||.+++||..+|+.+.++..++.
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 012689999999998766554 334455566777888899999999999999999999999986643
Q ss_pred eEE--E--EEcCCEE
Q 002389 904 ITS--L--LTANDIV 914 (929)
Q Consensus 904 Vts--v--s~dg~~L 914 (929)
+.+ + ..+|+.+
T Consensus 520 ~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQY 534 (677)
T ss_dssp CCSCCEEEEETTEEE
T ss_pred cccCCEEEEeCCEEE
Confidence 221 3 3567633
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.41 E-value=5e-06 Score=89.97 Aligned_cols=256 Identities=13% Similarity=0.083 Sum_probs=154.4
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
...+.++... ++.+..|+.+ |..+|. +++. +..+..+........+. +..++.++.++.+..+|.. ++...
T Consensus 59 ~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~--~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYFGSDK--VYAINP-DGTE--KWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GEEEECCEETTTTEECCSSCE--EEEECC-CGGG--GGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCcccceEEecCCcEEEecCc--EEEECC-CCcE--EEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 3445667776 6777777666 888886 3332 12222222222223333 5568888889999999988 66443
Q ss_pred EEEeccCCCeEEec-cCCCEEEEEecCCeEEEEeCCCcee-eecc-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCcc
Q 002389 728 IEVIATKEPIRKLD-TYGKTIFASTQGHRMKVIDSSRTLK-DIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVE 803 (929)
Q Consensus 728 ~~~~~h~~~V~s~s-~~g~~L~sgs~Dg~V~IWDl~~~~~-~l~~-~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~ 803 (929)
.... ....+.++. ..+..++.++.++.+..||..+... .... ...+.++... +|.+++++ +.+..+| .++..
T Consensus 131 ~~~~-~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 131 RFKT-KKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp EEEC-SSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE
T ss_pred EEcC-CCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE
Confidence 3322 222233322 2244577888889999999874322 2222 3346666674 78888887 8899999 55443
Q ss_pred ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 002389 804 REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASS 883 (929)
Q Consensus 804 ~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~ 883 (929)
.... ......+.++...+++...++. .++.+..+|.. +.....+......+..+.+.+++. |..++.+|.
T Consensus 207 ~~~~------~~~~~~~~~~~~~~~g~l~v~t--~~~gl~~~~~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~gg 276 (330)
T 3hxj_A 207 KWNF------YAGYWTVTRPAISEDGTIYVTS--LDGHLYAINPD-GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGH 276 (330)
T ss_dssp EEEE------CCSSCCCSCCEECTTSCEEEEE--TTTEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTCE
T ss_pred EEEE------ccCCcceeceEECCCCeEEEEc--CCCeEEEECCC-CCEeEEeeCCCCccccceEcCCCe-EEEecCCCC
Confidence 2111 1123456666777775544433 35678888754 444444444444445566666665 556677889
Q ss_pred EEEEECCCCcEEEEEeCCCC-eEEEEEc-CCEEEEEECCCcEEEee
Q 002389 884 LQIWLRGTQQKVGRISAGSK-ITSLLTA-NDIVLCGTETGLIKGWI 927 (929)
Q Consensus 884 I~IWdl~sg~~i~tl~~h~~-Vtsvs~d-g~~LaSgs~DG~I~IWd 927 (929)
+..+|. +++.+..+..... +.++..+ +..|..|+.+|.+++..
T Consensus 277 l~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 277 LYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp EEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred EEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence 999996 7887777765533 6666664 45678899999998764
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.38 E-value=1.6e-06 Score=93.88 Aligned_cols=252 Identities=15% Similarity=0.107 Sum_probs=156.9
Q ss_pred EEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc
Q 002389 655 LIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT 733 (929)
Q Consensus 655 l~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h 733 (929)
.... ++.+..|+.++.|..|| .+++. ......+...+.++...++|. ++.++.+ +..+|. +++....... .
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~-~ 96 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSV--KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT-K 96 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCE--EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcE--EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC-C
Confidence 3443 66788888899999999 76653 444444445567777777665 4445544 888886 5442211111 1
Q ss_pred CCCeEEeccCCCEEEEEecCCeEEEEeCCCcee-eecc-CCCeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccc
Q 002389 734 KEPIRKLDTYGKTIFASTQGHRMKVIDSSRTLK-DIYR-SKGIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPF 810 (929)
Q Consensus 734 ~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~-~l~~-~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~ 810 (929)
..........+..+++++.++.+..+|..+... .... ...+.++... +|.++.++.++.+..+|.. +......
T Consensus 97 ~~~~~~~~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--- 172 (330)
T 3hxj_A 97 KAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--- 172 (330)
T ss_dssp ----CCEEEETTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE---
T ss_pred CCcccCceEECCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE---
Confidence 111111112277888899899999999873322 2222 2234555665 7889999999999999988 5432211
Q ss_pred cccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 811 KSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 811 ~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
......+.++...+++...++. +.+..|| .++............+.++...++|...+ ++.++.+..+|.
T Consensus 173 ---~~~~~~~~~~~~d~~g~l~v~t----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~- 242 (330)
T 3hxj_A 173 ---KTNDAITSAASIGKDGTIYFGS----DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP- 242 (330)
T ss_dssp ---ECSSCCCSCCEECTTCCEEEES----SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-
T ss_pred ---ecCCCceeeeEEcCCCEEEEEe----CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-
Confidence 1123345555555454443332 5789999 66666655555556788888888886544 556788888874
Q ss_pred CCcEEEEEeCCCC-eEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 891 TQQKVGRISAGSK-ITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 891 sg~~i~tl~~h~~-Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
+++.+..+..+.. +.++..+ +..|..|+.+|.|..+|+
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 243 DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 6777776665543 3445555 557888888888888763
No 233
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.38 E-value=5e-06 Score=100.37 Aligned_cols=302 Identities=14% Similarity=0.124 Sum_probs=205.2
Q ss_pred ccccccchhhhHHHHHHHHHhccCCCCceec-cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcC
Q 002389 120 SGDLRKCNKDYVVEVTTLYKMLNSKTGVKYD-MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKG 198 (929)
Q Consensus 120 s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~ 198 (929)
+++..--+ .|+..+..+. ..++ .+.. ...+.+|..|++.|..+.++++.+.++..|..+... +..++.+.+.
T Consensus 25 ~~~~~vr~-~A~~~L~~La---~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~- 97 (644)
T 2z6h_A 25 DEDQVVVN-KAAVMVHQLS---KKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKS- 97 (644)
T ss_dssp CSCHHHHH-HHHHHHHHHH---TSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-
T ss_pred CCCHHHHH-HHHHHHHHHH---CCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHc-
Confidence 44444344 4555555553 3222 2222 345788999999999888999999999998876554 4577777766
Q ss_pred CCchHHHHHHhhc---ch-hhHHHHHhc----CCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHH
Q 002389 199 LRLSDLATALKRN---VP-EAAILIYLI----KPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVL 270 (929)
Q Consensus 199 ~~~~~~~~~lk~~---~~-~~~vl~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l 270 (929)
.-+..++.+|++. +. .|+-.++-| ++....+.....+|.|++.+..++.. -++++...|..|
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~----------~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----------FLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH----------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHH----------HHHHHHHHHHHH
Confidence 5578888888874 32 344333333 34455566789999999999875321 135555677777
Q ss_pred HhccccccchhhhhhhchhhhHhHHHHHhhccChHHH-HHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhH
Q 002389 271 VTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL-ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAI 349 (929)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~-~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~ 349 (929)
-.+ +.++...+...+++..|++.++.++.+.. ..++.+|. -+-....+|.++.+.--..+++++|.......+
T Consensus 168 a~~-----~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~-nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 168 AYG-----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK-VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HTT-----CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH-HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred Hhc-----CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH-HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 553 23455566778999999999988765554 33444433 333466778888887678899999999888999
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHH
Q 002389 350 MIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVIL 429 (929)
Q Consensus 350 ~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~ 429 (929)
..|+..|..|-.-... .++.-..+..|+..|+...++-+--++..|..|=.=.+..+..++...+++.|+
T Consensus 242 ~~a~~~L~nL~~~~~~----------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATK----------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp HHHHHHHHHHGGGCTT----------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhhcchh----------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 9999999988654332 122224567777777777777777777777766221111244456667999999
Q ss_pred HHHhccC-ChhhhHHHHHHHHhcCcc
Q 002389 430 KAVASEE-SSTMQLLSSFILSNIGGT 454 (929)
Q Consensus 430 ~~l~~~~-~~~~q~~~~~~l~~l~g~ 454 (929)
+.|.... ...+|..|++||-+|.++
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 9999864 589999999999999753
No 234
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.36 E-value=0.00084 Score=82.75 Aligned_cols=271 Identities=9% Similarity=0.063 Sum_probs=172.2
Q ss_pred CCCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEec-c-------CCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 002389 648 CSGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-E-------HRKAVTSFSLFEPGESLLSGSADKTIGVW 718 (929)
Q Consensus 648 H~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-g-------H~~~Vtslafspdg~~LaSgs~DgtIrIW 718 (929)
+...|.++... ++.+..|+.++-+..||..+++.. .+. . ....|.++...++|... .|+.+ -|.+|
T Consensus 213 ~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~ 287 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK---NYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIY 287 (795)
T ss_dssp -CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE---EECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEE
T ss_pred CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE---EeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheE
Confidence 35678998887 777777876656899998876432 221 1 13569999998888754 45545 58899
Q ss_pred EccCCeEEEEEEec------cCCCeEEeccC-CCEEEEEecCCeEEEEeCCC-ceeeec--------cCCCeEEEEEe-C
Q 002389 719 QMVQRKLELIEVIA------TKEPIRKLDTY-GKTIFASTQGHRMKVIDSSR-TLKDIY--------RSKGIKSMSVV-Q 781 (929)
Q Consensus 719 Dl~tg~~~~~~~~~------h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~-~~~~l~--------~~~~V~sla~s-d 781 (929)
|..++......... ....|.++..+ ...+..|+.++.|..|+... ....+. ....|.++... +
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence 98877643322111 12457776433 34678888888899998652 222221 13458888887 8
Q ss_pred CEEEEEECCCcEEEEEccCCccceeccccccc--ccCCCCeEEEEEcCCce-EEEEEecCCCeEEEEECCCCCeEEEec-
Q 002389 782 GKIYIGCMDSSIQELAVSNNVEREIKAPFKSW--RLQSKPINSLVVYKDWL-YSASSSVEGSNIKEWRRHRKPQISIAP- 857 (929)
Q Consensus 782 g~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~--~~~~~~I~sl~~~~d~i-~~~s~S~dDgtI~IWDl~~~~~i~~l~- 857 (929)
|.++.|+.++-+..||..++............ ......|.++...+++. .-++. .++-+..||..++.......
T Consensus 368 g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt--~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 368 KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT--HAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE--TTTEEEEEETTTCCEEEECTT
T ss_pred CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe--CcCceeEEeCCCCcEEEeecC
Confidence 88999999989999998876543332110000 01245688888876664 43433 34569999998877544332
Q ss_pred ---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-------CCCeEEEEEcC-CEEEEEECCCcEEEe
Q 002389 858 ---EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA-------GSKITSLLTAN-DIVLCGTETGLIKGW 926 (929)
Q Consensus 858 ---~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~-------h~~Vtsvs~dg-~~LaSgs~DG~I~IW 926 (929)
.+...|.++...++|.+.+... +-+.+||..+++....... ...|.++..+. ..|..|+.+| +..|
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~G-l~~~ 522 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEG-LSVF 522 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSC-EEEE
T ss_pred CCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCc-eEEE
Confidence 2345799999999888666554 4589999887654322211 13488888772 2455555555 6666
Q ss_pred ec
Q 002389 927 IP 928 (929)
Q Consensus 927 di 928 (929)
++
T Consensus 523 ~~ 524 (795)
T 4a2l_A 523 KQ 524 (795)
T ss_dssp EE
T ss_pred eC
Confidence 53
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.34 E-value=5.4e-07 Score=101.27 Aligned_cols=189 Identities=9% Similarity=0.018 Sum_probs=104.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC-Cc-eeeeccC--CCe-
Q 002389 702 PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-RT-LKDIYRS--KGI- 774 (929)
Q Consensus 702 dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~-~~-~~~l~~~--~~V- 774 (929)
++..+++++.||.|+.||..+|+....... .++.+ +..++..+++++.|+.|+.||.. +. ....... ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 577899999999999999999987655443 23322 33456677777899999999985 22 2222111 001
Q ss_pred EEEEE-eCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE
Q 002389 775 KSMSV-VQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI 853 (929)
Q Consensus 775 ~sla~-sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i 853 (929)
.+..+ .++.+++|+.++.++.||..+|+..-. ..... .....|++..+...+ .++.++.||..+++..
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--------~~~~~--~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--------LSSAF--ADSLSPSTSLLYLGR-TEYTITMYDTKTRELR 153 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------------EEEEE-EEEEEECCCSSSSSCC
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEE--------ecCCC--cccccccCCEEEEEe-cCCEEEEEECCCCCEE
Confidence 11122 366788899999999999998765322 11111 111222322222222 4679999999888765
Q ss_pred EEecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE
Q 002389 854 SIAPEKGTTIQAMAVVEDF---IYLNYNSSASSLQIWLRGTQQKVGRISAGSKITS 906 (929)
Q Consensus 854 ~~l~~h~~~V~slafSpdg---~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vts 906 (929)
..+..+. ....+++++. ..++.++.||.|+.||..+|+.+.++..++++..
T Consensus 154 W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~ 207 (369)
T 2hz6_A 154 WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVA 207 (369)
T ss_dssp CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEE
T ss_pred EeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEE
Confidence 4332211 1222333332 4567788999999999999999988887766544
No 236
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.33 E-value=6.2e-06 Score=96.11 Aligned_cols=305 Identities=14% Similarity=0.135 Sum_probs=207.5
Q ss_pred hhcccccccchhhhHHHHHHHHHhccCCCCceec-cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhh
Q 002389 117 LFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYD-MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIK 195 (929)
Q Consensus 117 ~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~ 195 (929)
+..+++-.-.+ .|+..+..+. ..++ .... +..+..|..|++.|..+.++++.+.+...|..+... +..++.+.
T Consensus 25 lL~~~~~~v~~-~A~~~L~~l~---~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~ 98 (529)
T 1jdh_A 25 LLNDEDQVVVN-KAAVMVHQLS---KKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIF 98 (529)
T ss_dssp HHTCSCHHHHH-HHHHHHHHHH---TSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HhCCCCHHHHH-HHHHHHHHHH---cCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHH
Confidence 33355444444 4554444443 3222 2222 345678999999998888999999999999997554 45777777
Q ss_pred hcCCCchHHHHHHhhc---ch-hhHHHHHhc----CCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHH
Q 002389 196 KKGLRLSDLATALKRN---VP-EAAILIYLI----KPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMII 267 (929)
Q Consensus 196 ~~~~~~~~~~~~lk~~---~~-~~~vl~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~ 267 (929)
+. .-+..+..+|+++ +. .|+-.++-| +.....+.+...+|.|++.+..++.. -+.++...|
T Consensus 99 ~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~----------~~~~~~~~L 167 (529)
T 1jdh_A 99 KS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK----------FLAITTDCL 167 (529)
T ss_dssp HT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH----------HHHHHHHHH
T ss_pred Hc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHH----------HHHHHHHHH
Confidence 76 5688888889874 32 444444444 33345556779999999999864311 024455566
Q ss_pred HHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCch
Q 002389 268 EVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKR 347 (929)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~ 347 (929)
..|-.+ |.++...+...+++..|++.++.++.+.+..++.-++.-+-.....|..+.+.--..++++++...+..
T Consensus 168 ~~la~~-----~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 168 QILAYG-----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHhC-----CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChH
Confidence 666442 334555666778999999999888777766554444433334566777777766788899999988888
Q ss_pred hHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCC-CCCCcchHHHHH
Q 002389 348 AIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENT-TGKSVFTEEAMQ 426 (929)
Q Consensus 348 ~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~-~~~s~yreea~~ 426 (929)
.+..|+..|.-|..-.... ++.-..+..|+..|+...++-+--++..|-.|=. .+| .+.-+....+++
T Consensus 243 ~~~~a~~~L~~l~~~~~~~----------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~~~v~ 311 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQ----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKMMVCQVGGIE 311 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTC----------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-TCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhcCChhh----------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHcCChH
Confidence 8888888888776544321 1223457778888888888888888888877722 222 344455667899
Q ss_pred HHHHHHhcc-CChhhhHHHHHHHHhcCcc
Q 002389 427 VILKAVASE-ESSTMQLLSSFILSNIGGT 454 (929)
Q Consensus 427 ~~~~~l~~~-~~~~~q~~~~~~l~~l~g~ 454 (929)
.|++.|... +++.+|..|+++|-+|..+
T Consensus 312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 312 ALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 999999985 5689999999999999653
No 237
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.00051 Score=84.52 Aligned_cols=270 Identities=10% Similarity=0.036 Sum_probs=174.0
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEE-------e-----ccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWD-------V-----KEHRKAVTSFSLFEPGESLLSGSADKTI 715 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~-------l-----~gH~~~Vtslafspdg~~LaSgs~DgtI 715 (929)
...|+++... ++.|..|+..+-|.++|..+........ . .-....|.++...++|. |..|+.++-|
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl 335 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI 335 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence 4679999987 7788888886778899988765322111 0 01345799999988876 6667777778
Q ss_pred EEEEccCCeEEEEEEe--------ccCCCeEEeccCC-CEEEEEecCCeEEEEeCCCc-eeeec-----cCCCeEEEEEe
Q 002389 716 GVWQMVQRKLELIEVI--------ATKEPIRKLDTYG-KTIFASTQGHRMKVIDSSRT-LKDIY-----RSKGIKSMSVV 780 (929)
Q Consensus 716 rIWDl~tg~~~~~~~~--------~h~~~V~s~s~~g-~~L~sgs~Dg~V~IWDl~~~-~~~l~-----~~~~V~sla~s 780 (929)
..++..++........ -....|.++..+. ..+..|+.++.+..||.... ...+. ....|.++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 415 (781)
T 3v9f_A 336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD 415 (781)
T ss_dssp EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC
T ss_pred EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC
Confidence 8898876653322111 1224577776543 56888887888999997632 22111 23458888886
Q ss_pred -CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC
Q 002389 781 -QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK 859 (929)
Q Consensus 781 -dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h 859 (929)
+|.+++|+.++.+..+|..++.......+ ......|.++...+++..-++.. +-+..||..++.........
T Consensus 416 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~----~~~~~~v~~i~~d~~g~lwigt~---~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 416 SEGNLWFGTYLGNISYYNTRLKKFQIIELE----KNELLDVRVFYEDKNKKIWIGTH---AGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp TTSCEEEEETTEEEEEECSSSCEEEECCST----TTCCCCEEEEEECTTSEEEEEET---TEEEEEESSSSSCCEEECTT
T ss_pred CCCCEEEEeccCCEEEEcCCCCcEEEeccC----CCCCCeEEEEEECCCCCEEEEEC---CceEEEeCCCCeEEecccCc
Confidence 88899999888899999877654333211 12346788888887766655542 45899998876654433222
Q ss_pred -----CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-----CCeEEEEEc-CCEEEEEECCCcEEEeec
Q 002389 860 -----GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-----SKITSLLTA-NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 860 -----~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-----~~Vtsvs~d-g~~LaSgs~DG~I~IWdi 928 (929)
...|.++...++|.+.+.. .++-+..||..+++ +..+... ..|.++..+ ...|..|+.+|.|..|++
T Consensus 489 ~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~ 566 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSA 566 (781)
T ss_dssp TSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCT
T ss_pred ccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECC
Confidence 4579999999999876654 33447888887654 3334321 348888876 234555666775477764
No 238
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.29 E-value=6.4e-06 Score=85.82 Aligned_cols=247 Identities=17% Similarity=0.133 Sum_probs=176.2
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccch
Q 002389 156 ILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELL 235 (929)
Q Consensus 156 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~ 235 (929)
.|..|++.|.. .++++.+.++..|..+...++..++.+.+ ...+
T Consensus 3 ~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----------------------------------~g~i 46 (252)
T 4hxt_A 3 DVEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVD-----------------------------------AGGV 46 (252)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHH-----------------------------------TTHH
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHH-----------------------------------CCCH
Confidence 35667777654 44888888998888888877655554432 2567
Q ss_pred hHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHH
Q 002389 236 PTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILV 315 (929)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~ 315 (929)
|.|++.+..++.. =+..|...|..|... +..+...+...++++.|+..++.++.+-+..++..|.
T Consensus 47 ~~L~~ll~~~~~~----------v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 47 EVLVKLLTSTDSE----------VQKEAARALANIASG-----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHHHHHTTCSCHH----------HHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHH----------HHHHHHHHHHHHHcC-----ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7888888764421 146667777777442 1344555667889999999999989888999999998
Q ss_pred hhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccc
Q 002389 316 KCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQS 395 (929)
Q Consensus 316 ~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~ 395 (929)
.....+..++..+.+.--..+++++|.+.+...+..|+..|..|..-+..... .+.+.|. +..|+..|+...+
T Consensus 112 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~~~~~---i~~L~~ll~~~~~ 184 (252)
T 4hxt_A 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK----AIVDAGG---VEVLVKLLTSTDS 184 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH----HHHHTTH---HHHHHHHTTCSCH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH----HHHHCcC---HHHHHHHHCCCCH
Confidence 88877788888888877788999999999999999999999999875432222 2334454 5556677777777
Q ss_pred hhhHHHHHHHhhhccccCCC-CCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchh
Q 002389 396 DYQLLAANLLLQLDTLENTT-GKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPY 462 (929)
Q Consensus 396 ~~~~~~a~lllqld~l~~~~-~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~ 462 (929)
+-+--++..|-+|=. .+|. ..-+..+.+++.|++.|+.. ++.+|..|+.+|.+|+.+......++
T Consensus 185 ~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 185 EVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCCcccccc
Confidence 777777777766532 2332 22344456889999988754 77999999999999998776655554
No 239
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.27 E-value=1.2e-05 Score=99.27 Aligned_cols=275 Identities=13% Similarity=0.125 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHHHhc----CC
Q 002389 153 QDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIYLI----KP 224 (929)
Q Consensus 153 ~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~~l~----~~ 224 (929)
.+.+|..|++.|.++.++++.+.++..|..+ ++++..++.+.+. .-+..|+.+|+++ +. .|+-.++-| ..
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L-s~~~~~~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 5789999999999888999999999999995 4556667777776 4588888899874 33 444444444 22
Q ss_pred CchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccCh
Q 002389 225 SPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNL 304 (929)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 304 (929)
....+.....+|.|++.+..++.. - ...+...|..|..+ |.+....+...+++..|++.++.++.
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~-v---------~~~a~~aL~~La~~-----~~e~~~~i~~~~~i~~Lv~lL~~~~~ 332 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVK-F---------LAITTDCLQILAYG-----NQESKLIILASGGPQALVNIMRTYTY 332 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHH-H---------HHHHHHHHHHHHTT-----CHHHHHHHHTTTHHHHHHHHHTTCCC
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHH-H---------HHHHHHHHHHHhcC-----ChHHHHHHHHcCCHHHHHHHHhcCCH
Confidence 233344678999999999864311 0 24455566655432 33455556667889999999998877
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHH
Q 002389 305 EELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILH 384 (929)
Q Consensus 305 ~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh 384 (929)
+.+...+.-+++-+-.....|..|.+.--..+++++|...+...+..|+..|..|..-.... ++.-..+.
T Consensus 333 ~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~----------~~~~~~i~ 402 (780)
T 2z6g_A 333 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----------EGMEGLLG 402 (780)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC----------SCCHHHHH
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh----------hhhhhHHH
Confidence 66543333333333345667777777666788999999888888888999998887655321 12233566
Q ss_pred HHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccC-ChhhhHHHHHHHHhcCcc
Q 002389 385 ILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEE-SSTMQLLSSFILSNIGGT 454 (929)
Q Consensus 385 ~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~-~~~~q~~~~~~l~~l~g~ 454 (929)
.|+..|+...++-+--++..|-.|=.-.+..+..+.++.+++.|++.|.... ...+|..|+++|-+|..+
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 6666777777777777777776662211123444556789999999999864 458999999999999754
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.25 E-value=3.5e-05 Score=85.15 Aligned_cols=250 Identities=10% Similarity=0.099 Sum_probs=143.7
Q ss_pred CCEEEEEEe-CC-EEEEEE--CCCeEEEEECCCCCeeEEEEe-------ccCCCcEEEEEEcCCCCEEEEEeC-----CC
Q 002389 650 GAVTALIYY-KG-LLCSGF--SDGSIKMWDIKKQSAMLVWDV-------KEHRKAVTSFSLFEPGESLLSGSA-----DK 713 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs--~DGtIrIWD~~~~~~~~i~~l-------~gH~~~Vtslafspdg~~LaSgs~-----Dg 713 (929)
..+..|+++ ++ .+++.. .++.++||.+.+++ +..+ .+|-..+.+++++++|+.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~---~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG---LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE---EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC---eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 678899998 55 455543 23436666665442 2322 235578999999999876555433 57
Q ss_pred eEEEEEccCCeEEEEEEecc-----CCCeE--EeccCCCEEEEEe----cCCeEEEEeCC-CceeeeccC-CCeE--EEE
Q 002389 714 TIGVWQMVQRKLELIEVIAT-----KEPIR--KLDTYGKTIFAST----QGHRMKVIDSS-RTLKDIYRS-KGIK--SMS 778 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~h-----~~~V~--s~s~~g~~L~sgs----~Dg~V~IWDl~-~~~~~l~~~-~~V~--sla 778 (929)
.|.+||+.+++......... ..... .+++++..++.+. .++.|.+||.. +........ .... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 89999999887544333211 11223 3455555555443 56789999986 322222211 0100 012
Q ss_pred Ee-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC---CCCe-
Q 002389 779 VV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH---RKPQ- 852 (929)
Q Consensus 779 ~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~---~~~~- 852 (929)
+. +|. +...+.++.+..|. ..+..+++++++..+......++.+..++.. .+..
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp CEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred eeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 22 454 33445555543332 2346688888876554444344566555531 1110
Q ss_pred -------EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEc--CCEEEEEECCC
Q 002389 853 -------ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAG--SKITSLLTA--NDIVLCGTETG 921 (929)
Q Consensus 853 -------i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h--~~Vtsvs~d--g~~LaSgs~DG 921 (929)
+. ..++......++++++|.++++...++.|.+||..+|+........ ..+++++++ ++++++.+..+
T Consensus 234 ~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 234 DAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 01 1123345667999999999999999999999998667643333222 347888885 56666666544
Q ss_pred cE
Q 002389 922 LI 923 (929)
Q Consensus 922 ~I 923 (929)
++
T Consensus 313 ~~ 314 (343)
T 2qe8_A 313 HS 314 (343)
T ss_dssp GS
T ss_pred cc
Confidence 33
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.14 E-value=0.00026 Score=85.87 Aligned_cols=268 Identities=15% Similarity=0.146 Sum_probs=159.7
Q ss_pred EeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCc----------E-EEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 657 YYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA----------V-TSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 657 fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~----------V-tslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
..++.++.++.++.|..+|..+++. +.++...... + ..+++ ++..++.++.|+.+..+|..+|+.
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE
T ss_pred EECCEEEEECCCCeEEEEECCCChh--ceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 3488899999999999999999864 4555322110 1 11222 356788889999999999999987
Q ss_pred EEEEEeccCC---CeEE-eccCCCEEEEEec------CCeEEEEeCCC-ce-eeecc--C--------------------
Q 002389 726 ELIEVIATKE---PIRK-LDTYGKTIFASTQ------GHRMKVIDSSR-TL-KDIYR--S-------------------- 771 (929)
Q Consensus 726 ~~~~~~~h~~---~V~s-~s~~g~~L~sgs~------Dg~V~IWDl~~-~~-~~l~~--~-------------------- 771 (929)
.......... .+.+ -...+..++++.. ++.|..+|... .. -.+.. .
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 6555442111 1110 0112456666543 47899999762 21 11110 0
Q ss_pred ---------CC-eEEEEEe--CCEEEEEECCC-------------------cEEEEEccCCccceecc--cccccccC-C
Q 002389 772 ---------KG-IKSMSVV--QGKIYIGCMDS-------------------SIQELAVSNNVEREIKA--PFKSWRLQ-S 817 (929)
Q Consensus 772 ---------~~-V~sla~s--dg~llsgs~Dg-------------------~I~iwDl~tg~~~~i~~--~~~~~~~~-~ 817 (929)
.. ...+++. .+.++.++.++ .|.-+|..+|+..-... +...|... .
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 00 1134554 56677777665 38999999887542211 11122111 1
Q ss_pred CCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCC------------CC---------------------
Q 002389 818 KPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKG------------TT--------------------- 862 (929)
Q Consensus 818 ~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~------------~~--------------------- 862 (929)
.+........++. ..+.....+|.++++|..+++++....... .+
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 2222222222332 123333477899999999998763322111 00
Q ss_pred ---eEEEEEecCCCEEEEE------------------------------------eCCCcEEEEECCCCcEEEEEeCCCC
Q 002389 863 ---IQAMAVVEDFIYLNYN------------------------------------SSASSLQIWLRGTQQKVGRISAGSK 903 (929)
Q Consensus 863 ---V~slafSpdg~~LaSg------------------------------------S~DG~I~IWdl~sg~~i~tl~~h~~ 903 (929)
-..++++|+...+... ..+|.|..||..+|+.+.+...+.+
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~ 459 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH 459 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC
Confidence 0126788876665431 1348899999999999888876655
Q ss_pred eE--EEEEcCCEEEEEECCCcEEEeec
Q 002389 904 IT--SLLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 904 Vt--svs~dg~~LaSgs~DG~I~IWdi 928 (929)
+. .+...+..+++|+.||.++.||.
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CcCceeEeCCCEEEEECCcccchhhhh
Confidence 43 35667889999999999999984
No 242
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0017 Score=79.86 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=165.2
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEec-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK-----EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ 722 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~-----gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t 722 (929)
...|.++... ++.|..|+.+ -+.+||..+++......-. -....|.++...++|. |..|+..+-|.++|..+
T Consensus 210 ~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp CSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 3579999887 6667677766 6889998876432211110 1235699999888776 55566645688899877
Q ss_pred CeEEEEEE-------e------ccCCCeEEeccC-CCEEEEEecCCeEEEEeCCC-ceeeec-----------cCCCeEE
Q 002389 723 RKLELIEV-------I------ATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSR-TLKDIY-----------RSKGIKS 776 (929)
Q Consensus 723 g~~~~~~~-------~------~h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~-~~~~l~-----------~~~~V~s 776 (929)
+....... . -....|.++..+ ...+..|+.++.|..|+... ....+. ....|.+
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence 65432211 0 123456676433 34678888888899998763 222221 1345888
Q ss_pred EEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEE
Q 002389 777 MSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISI 855 (929)
Q Consensus 777 la~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~ 855 (929)
+... +|.++.|+.++-+..||..++.......+ .......|.++...+++.+-++. .++.+..+|..++.....
T Consensus 368 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 368 VCDDGQGKLWIGTDGGGINVFENGKRVAIYNKEN---RELLSNSVLCSLKDSEGNLWFGT--YLGNISYYNTRLKKFQII 442 (781)
T ss_dssp EEECTTSCEEEEEBSSCEEEEETTEEEEECC--------CCCSBEEEEEECTTSCEEEEE--TTEEEEEECSSSCEEEEC
T ss_pred EEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCC---CCCCCcceEEEEECCCCCEEEEe--ccCCEEEEcCCCCcEEEe
Confidence 8887 78899999888899999876543222110 01234668888877665544433 345688899877764332
Q ss_pred ec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeC------CCCeEEEEEc-CCEEEEEECCCcEEEe
Q 002389 856 AP--EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISA------GSKITSLLTA-NDIVLCGTETGLIKGW 926 (929)
Q Consensus 856 l~--~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~------h~~Vtsvs~d-g~~LaSgs~DG~I~IW 926 (929)
.. .....|.++...++|.+.+.. . +-+..||..+++....... ...|.++..+ ...|..|+.++-+..|
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~ 520 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIY 520 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEE
T ss_pred ccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEE
Confidence 21 234679999988888765544 4 5689999887665333222 2348888877 2345566663336656
Q ss_pred ec
Q 002389 927 IP 928 (929)
Q Consensus 927 di 928 (929)
++
T Consensus 521 ~~ 522 (781)
T 3v9f_A 521 TP 522 (781)
T ss_dssp CT
T ss_pred eC
Confidence 53
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.13 E-value=0.00011 Score=81.24 Aligned_cols=229 Identities=9% Similarity=0.008 Sum_probs=137.9
Q ss_pred CCCCCCEEEEEEe-CCEEEEEEC------CCeEEEEECCCCCeeEEEEec----cCCCcEEEEEEcCCCCEE-EEEe---
Q 002389 646 HKCSGAVTALIYY-KGLLCSGFS------DGSIKMWDIKKQSAMLVWDVK----EHRKAVTSFSLFEPGESL-LSGS--- 710 (929)
Q Consensus 646 ~gH~~~Vtsl~fs-~~~LaSGs~------DGtIrIWD~~~~~~~~i~~l~----gH~~~Vtslafspdg~~L-aSgs--- 710 (929)
.+|-..+..++++ ++.|+.... ++.|.+||..+++......+. .+...+..+++++++..+ ++..
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 3577899999998 565555443 589999999987532222332 123456899999876554 5555
Q ss_pred CCCeEEEEEccCCeEEEEEEeccCCCe---EEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-CCE-EE
Q 002389 711 ADKTIGVWQMVQRKLELIEVIATKEPI---RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IY 785 (929)
Q Consensus 711 ~DgtIrIWDl~tg~~~~~~~~~h~~~V---~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~-ll 785 (929)
.++.|.+||..+++.... ..+|.... ..+..++..+.+.+.++.+..|. ..+..++++ +|+ ++
T Consensus 143 ~~~~i~v~d~~~g~~~r~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARV-LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------LGVNGIVLDAENEWLY 210 (343)
T ss_dssp GGCEEEEEETTTCCEEEE-CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------CCEEEEEECTTSCEEE
T ss_pred CCCeEEEEECCCCCEEEE-ecCCCcccccccceeECCEEEEeccCCCceecee-----------cccceeEeccCCCEEE
Confidence 688999999988874332 21211110 23445566666667777766553 236778887 665 77
Q ss_pred EEECCC-cEEEEEccC---Cc--cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC-
Q 002389 786 IGCMDS-SIQELAVSN---NV--EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE- 858 (929)
Q Consensus 786 sgs~Dg-~I~iwDl~t---g~--~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~- 858 (929)
.+..++ .+..++... +. ...+...... .++......+++.+++.+.++.. .++.|.+||..++........
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEEEEEECG
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEEEEEECC
Confidence 776655 555555321 10 0000000000 01222445677777776655544 568999999855554333322
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 859 KGTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 859 h~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
+...+.+++|.++|.++++.+..+.+.+|.
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ceecCCeeEECCCCcEEEEeCccccccccc
Confidence 245789999999999888887666655554
No 244
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.12 E-value=9.6e-06 Score=95.18 Aligned_cols=338 Identities=12% Similarity=0.122 Sum_probs=214.6
Q ss_pred HHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCcee-ccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcch
Q 002389 110 IEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKY-DMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE 188 (929)
Q Consensus 110 l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~ 188 (929)
++..|..| .|++....- .|+..+-++ +-...+... .+.+.-+|.-|++.|..+.+++|+..|...|+-+.+.+.
T Consensus 59 i~~~v~~l-~s~d~~~q~-~a~~~~rkl---ls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQL-QATQAARKL---LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp HHHHHHHH-TSSCHHHHH-HHHHHHHHH---HTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHh-cCCCHHHHH-HHHHHHHHH---hcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 45556666 455555444 355444443 322222222 255666788899999999999999999999999999998
Q ss_pred hhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHH-HhcCCC---chhhhhccchhHHHHHHhccccccCcccccccCch
Q 002389 189 SVIEDIKKKGLRLSDLATALKRN---VP-EAAILI-YLIKPS---PTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP 260 (929)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~-~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 260 (929)
...+.+.+.|- +..|+.+|++. +. .|+-.+ .+..-. ...+.....+|.|+..+...+.... .+.-.
T Consensus 134 e~~~~vv~~Ga-Ip~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~-----~~~~~ 207 (510)
T 3ul1_B 134 EQTKAVVDGGA-IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL-----ACGYL 207 (510)
T ss_dssp HHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS-----CHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh-----hHHHH
Confidence 88888887763 67788889884 44 333333 343322 2345566889999999986542201 00011
Q ss_pred hhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhh
Q 002389 261 AASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACL 340 (929)
Q Consensus 261 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l 340 (929)
..+...+..+..+.+...... ...++++.|++.+..++.+-+..++..|..........+..+.+.--..+++++
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~-----~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 282 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLD-----AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHH-----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHH-----HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence 223334444433322111111 134678888888888898889888888877765554555556555556778999
Q ss_pred hhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcc
Q 002389 341 LQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVF 420 (929)
Q Consensus 341 ~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~y 420 (929)
|.+.+...+..|++.|..|..-+-... +.+-+.|.+.. |...|+...++-+--+|..|-++=.-.+..+..+.
T Consensus 283 L~~~~~~v~~~al~aL~nl~~~~~~~~----~~i~~~g~l~~---L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 283 LGATELPIVTPALRAIGNIVTGTDEQT----QKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTGGGG---CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hcCCChhhhhHHHHHHHHhhcCCHHHH----HHHhhccchHH---HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999886553222 23334566554 34445666777777777777766432222334455
Q ss_pred hHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCc
Q 002389 421 TEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSS 476 (929)
Q Consensus 421 reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~ 476 (929)
...++..|++.|.+. +..+|..|+.||.+|. ..|.+-....|.+ +|.-++
T Consensus 356 ~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~----~~~~~~~~~~L~~-~g~i~~ 405 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKA-DFKTQKEAAWAITNYT----SGGTVEQIVYLVH-CGIIEP 405 (510)
T ss_dssp HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH----HHCCHHHHHHHHH-TTCHHH
T ss_pred hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH----ccCCHHHHHHHHH-CCCHHH
Confidence 556788899988766 6788999999998864 3444444444444 444333
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.08 E-value=0.004 Score=65.51 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=137.7
Q ss_pred EEEEEECCCeEEEEECCCCCeeE---EEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEeccCCC
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAML---VWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEP 736 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~---i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~ 736 (929)
+|+.+.. +.|+.+++.+..... ...+......+.+++|++++..|+ +-..++.|..++...+..... .......
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-~~~~~~~ 80 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-IRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE-ECTTCCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE-EECCCCC
Confidence 3444443 478888887654210 111111224578999999777655 445578999999876543221 1111122
Q ss_pred eE--EeccCCCEEEEEe-cCCeEEEEeCCCce-eeecc--CCCeEEEEEe--CCEEEEEEC---CCcEEEEEccCCccce
Q 002389 737 IR--KLDTYGKTIFAST-QGHRMKVIDSSRTL-KDIYR--SKGIKSMSVV--QGKIYIGCM---DSSIQELAVSNNVERE 805 (929)
Q Consensus 737 V~--s~s~~g~~L~sgs-~Dg~V~IWDl~~~~-~~l~~--~~~V~sla~s--dg~llsgs~---Dg~I~iwDl~tg~~~~ 805 (929)
.. .+.+.+..++.+. .++.|.+++.++.. ..+.. ......++++ ++.++.+.. .+.|..+++.......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 33 4566666666665 45789999987532 22222 2457788887 577776654 3678888876432222
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 885 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~ 885 (929)
+. .........+++.+++..+.......+.|..+|..+........+ ......++.. ++..+++....+.|.
T Consensus 161 ~~------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 161 LA------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp EE------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EE------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEE
Confidence 11 112345678888876433332333567999999886544333332 2334567664 344445554678999
Q ss_pred EEECCCCcEEEEEeCC
Q 002389 886 IWLRGTQQKVGRISAG 901 (929)
Q Consensus 886 IWdl~sg~~i~tl~~h 901 (929)
++|..+++.+.++..+
T Consensus 233 ~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 233 AMDLAISKEMDTFHPH 248 (267)
T ss_dssp EEETTTTEEEEEECCS
T ss_pred EEeCCCCCceEEEccc
Confidence 9999999999988754
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.08 E-value=0.00033 Score=82.59 Aligned_cols=236 Identities=9% Similarity=0.023 Sum_probs=157.8
Q ss_pred EEEEE-ECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEE-c-CCCCEEEEEe------------------CCCeEEEEE
Q 002389 661 LLCSG-FSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSL-F-EPGESLLSGS------------------ADKTIGVWQ 719 (929)
Q Consensus 661 ~LaSG-s~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslaf-s-pdg~~LaSgs------------------~DgtIrIWD 719 (929)
+++.. ..++.|.+-|+.+.++..+.++.. ...+..+++ + |++++++.++ .++.+.+.|
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID 181 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 181 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence 55544 456789999999987644445543 235788888 5 9999988774 356899999
Q ss_pred ccCCeEEEEEEeccCCCeEEeccCCCEEEEEecCC---------------eEEEEeCCCceeeeccCCCeEEEEEeCCE-
Q 002389 720 MVQRKLELIEVIATKEPIRKLDTYGKTIFASTQGH---------------RMKVIDSSRTLKDIYRSKGIKSMSVVQGK- 783 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg---------------~V~IWDl~~~~~~l~~~~~V~sla~sdg~- 783 (929)
..+.+.......+....-..++++|+++++.+.+. .+.+.|..+..... .+|+
T Consensus 182 ~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v-----------~~Gk~ 250 (595)
T 1fwx_A 182 ADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI-----------AAGDY 250 (595)
T ss_dssp TTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH-----------HHTCS
T ss_pred CCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec-----------cCCCe
Confidence 99987666555544444556889999999988653 24444432111111 1233
Q ss_pred EEEEECCCcEEEEEccC--CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----------
Q 002389 784 IYIGCMDSSIQELAVSN--NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP---------- 851 (929)
Q Consensus 784 llsgs~Dg~I~iwDl~t--g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~---------- 851 (929)
... +.|.+.|..+ +.......+ -+...+.+.++||+.+.+..+..+.+|.++|..+.+
T Consensus 251 ~~i----~~V~VID~~~~~~~~~~~~Ip------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEASSLFTRYIP------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp EEE----TTEEEEECSGGGCCSSEEEEE------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred eEE----CcEEEEeCcccCCceeEEEEe------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 221 5599999987 332110111 134567889999999988887777899999988542
Q ss_pred --eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC----------CcEEEEEeCCCCe--EE------EEEcC
Q 002389 852 --QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT----------QQKVGRISAGSKI--TS------LLTAN 911 (929)
Q Consensus 852 --~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s----------g~~i~tl~~h~~V--ts------vs~dg 911 (929)
..... .-......++|+|+|...++.--|+.|.+||+.+ .+.+.++..|... .+ +.+||
T Consensus 321 ~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 321 SAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp GGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred cceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 22322 2345678999999995445666899999999877 6678888887443 22 23678
Q ss_pred CEEEEEEC
Q 002389 912 DIVLCGTE 919 (929)
Q Consensus 912 ~~LaSgs~ 919 (929)
++|+++..
T Consensus 400 k~l~~~Nk 407 (595)
T 1fwx_A 400 DWLVCLSK 407 (595)
T ss_dssp SEEEEEES
T ss_pred CEEEEcCC
Confidence 88887654
No 247
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.07 E-value=2.3e-05 Score=92.02 Aligned_cols=277 Identities=11% Similarity=0.042 Sum_probs=195.1
Q ss_pred cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-h-hHHHHHhcC--
Q 002389 151 MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-E-AAILIYLIK-- 223 (929)
Q Consensus 151 ~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~-~~vl~~l~~-- 223 (929)
+..+.+|..|++.|. +.+++|.+.++..|..+...++..+..+... .-+.++..+|+.. +. . +..|-+|..
T Consensus 169 ~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 169 VVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 444556778888776 5689999999999999988777777777665 4477888888762 33 2 234555553
Q ss_pred -CCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhcc
Q 002389 224 -PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQ 302 (929)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 302 (929)
|..........+|.|++.+..++.. -...|...|..|..+.+ .....+...+++..|+..+..+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~----------v~~~a~~~L~~L~~~~~-----~~~~~~~~~~~v~~Lv~lL~~~ 311 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTE----------TLVDACWAISYLSDGPQ-----EAIQAVIDVRIPKRLVELLSHE 311 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHH----------HHHHHHHHHHHHHSSCH-----HHHHHHHHTTCHHHHHHGGGCS
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHH----------HHHHHHHHHHHHhCCCH-----HHHHHHHhcCcHHHHHHHHCCC
Confidence 5555666678999999999764421 13667777777765432 2344555678999999999988
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhH
Q 002389 303 NLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINI 382 (929)
Q Consensus 303 ~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~ 382 (929)
+.+-+..++..|......+...+..+.+.--..+++++|...+...|..|+..|..|..-+.... +.+-+.|.
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~----~~~~~~~~--- 384 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI----QAVIDANL--- 384 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTC---
T ss_pred ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH----HHHHHCCC---
Confidence 88889999888887776655555555554456688899999988999999999999886443222 22334444
Q ss_pred HHHHHHHhhcccchhhHHHHHHHhhhccccCC--C-CCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 383 LHILKLSLQQLQSDYQLLAANLLLQLDTLENT--T-GKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 383 mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~--~-~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
+..|+..|+...++-+--++..|-++=.-++| . ...+....+++.|+..|... ++.++..|+.||.+|-
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 55667777777778788888777766433333 1 11233445889999998865 7888999999998764
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.06 E-value=0.00073 Score=72.30 Aligned_cols=205 Identities=9% Similarity=-0.038 Sum_probs=128.8
Q ss_pred EEEEeccCCC--cEEEEEEcCCCCEEEEEeC--CCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCeEE
Q 002389 683 LVWDVKEHRK--AVTSFSLFEPGESLLSGSA--DKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMK 757 (929)
Q Consensus 683 ~i~~l~gH~~--~Vtslafspdg~~LaSgs~--DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V~ 757 (929)
.+.++ .|.. ....+.|+|++...++.+. ++.|++.|..+++.......+.......+..+++.++.++ .++.+.
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence 35555 4543 3689999998754455443 6899999999998765544333323335666677777776 467999
Q ss_pred EEeCCC--ceeeeccC-CCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEE
Q 002389 758 VIDSSR--TLKDIYRS-KGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSAS 834 (929)
Q Consensus 758 IWDl~~--~~~~l~~~-~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s 834 (929)
++|... ...++... ..-..++...++++++..++.+.++|..+.+....... ..-...-..++.+.+..+..|...
T Consensus 90 viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp EEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTEEEEEE
T ss_pred EEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE-CCCCcccccceeEEEECCEEEEec
Confidence 999873 33444333 22233444444577777788999999988553222110 000001123556666644444332
Q ss_pred EecCCCeEEEEECCCCCeEEEecCC-------------CCCeEEEEEecCCCE-EEEEeCCCcEEEEECCC
Q 002389 835 SSVEGSNIKEWRRHRKPQISIAPEK-------------GTTIQAMAVVEDFIY-LNYNSSASSLQIWLRGT 891 (929)
Q Consensus 835 ~S~dDgtI~IWDl~~~~~i~~l~~h-------------~~~V~slafSpdg~~-LaSgS~DG~I~IWdl~s 891 (929)
..++.|.+.|..+++.+..+.-. ....+.|+|+|+++. ++++...+++.+.++..
T Consensus 169 --~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 169 --WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp --TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred --CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 25679999999999987776432 135689999999865 56666788888887644
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.06 E-value=0.001 Score=79.07 Aligned_cols=266 Identities=10% Similarity=0.024 Sum_probs=157.3
Q ss_pred eCCEEEEEEC-CCeEEEEEC-CCCCeeEEEEeccCCC----------cE-EEEEEcCCCCEEEEEeCCCeEEEEEccCCe
Q 002389 658 YKGLLCSGFS-DGSIKMWDI-KKQSAMLVWDVKEHRK----------AV-TSFSLFEPGESLLSGSADKTIGVWQMVQRK 724 (929)
Q Consensus 658 s~~~LaSGs~-DGtIrIWD~-~~~~~~~i~~l~gH~~----------~V-tslafspdg~~LaSgs~DgtIrIWDl~tg~ 724 (929)
.++.++.++. ++.|.-+|. .+++. +.++..... .+ ..++. ++..++.++.|+.+..+|..+|+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKI--VWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccE--EEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 4788888888 899999999 88864 444422111 00 11222 35678888899999999999998
Q ss_pred EEEEEEecc-C--CCeEE-eccCCCEEEEEec------CCeEEEEeCCC-ce-eeeccCCC-------------------
Q 002389 725 LELIEVIAT-K--EPIRK-LDTYGKTIFASTQ------GHRMKVIDSSR-TL-KDIYRSKG------------------- 773 (929)
Q Consensus 725 ~~~~~~~~h-~--~~V~s-~s~~g~~L~sgs~------Dg~V~IWDl~~-~~-~~l~~~~~------------------- 773 (929)
......... . ..+.+ -...+..+++++. ++.|..+|... .. -.+.....
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 765544321 1 01111 0113456777665 78999999862 21 11111100
Q ss_pred -------------------e-EEEEEe--CCEEEEEECC----------------CcEEEEEccCCccceeccc--cccc
Q 002389 774 -------------------I-KSMSVV--QGKIYIGCMD----------------SSIQELAVSNNVEREIKAP--FKSW 813 (929)
Q Consensus 774 -------------------V-~sla~s--dg~llsgs~D----------------g~I~iwDl~tg~~~~i~~~--~~~~ 813 (929)
+ ..+++. .+.++.+..+ +.|..+|..+|+..-.... ...|
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 0 123443 5677766532 3589999998875322110 0111
Q ss_pred c--cCCCCeEEEEEcCCce--EEEEEecCCCeEEEEECCCCCeEEEecCCC-------------CCe-------------
Q 002389 814 R--LQSKPINSLVVYKDWL--YSASSSVEGSNIKEWRRHRKPQISIAPEKG-------------TTI------------- 863 (929)
Q Consensus 814 ~--~~~~~I~sl~~~~d~i--~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-------------~~V------------- 863 (929)
. ....++. .....++. ..+.....+|.++++|..+++.+....... .++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~ 375 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence 1 1122332 22223442 222233367899999999988765442111 111
Q ss_pred -------------EEEEEecCCCEEEEEe-------------------------------------CCCcEEEEECCCCc
Q 002389 864 -------------QAMAVVEDFIYLNYNS-------------------------------------SASSLQIWLRGTQQ 893 (929)
Q Consensus 864 -------------~slafSpdg~~LaSgS-------------------------------------~DG~I~IWdl~sg~ 893 (929)
..++++|+...+...+ .+|.|..||..+|+
T Consensus 376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~ 455 (571)
T 2ad6_A 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence 2467888877766543 35789999999999
Q ss_pred EEEEEeCCCCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 894 KVGRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 894 ~i~tl~~h~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
.+.++.....+.+ +...+..++.++.||.|+.||.
T Consensus 456 ~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 456 AKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred EEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 9888876544333 3455778888999999999984
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.05 E-value=0.00038 Score=74.05 Aligned_cols=189 Identities=10% Similarity=-0.016 Sum_probs=121.1
Q ss_pred EEEEeccCCCc--EEEEEEcCCCCEEEEEeCCC--eEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEec-CCeEE
Q 002389 683 LVWDVKEHRKA--VTSFSLFEPGESLLSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQ-GHRMK 757 (929)
Q Consensus 683 ~i~~l~gH~~~--Vtslafspdg~~LaSgs~Dg--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~-Dg~V~ 757 (929)
.+.++ .|... ...+.|+ ++....+.+.+| .|+++|+.+++.......+...--..+.++++.++.++. ++.+.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 35555 44433 4788998 666667777776 899999999987655444322222346667788877764 77999
Q ss_pred EEeCC--CceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCC---CCeEEEEEcCCceEE
Q 002389 758 VIDSS--RTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS---KPINSLVVYKDWLYS 832 (929)
Q Consensus 758 IWDl~--~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~---~~I~sl~~~~d~i~~ 832 (929)
+||.. +...++.....-..++...+.++....++.|.++|..+.+..... .+ ..++ ..++.+.+..+.++.
T Consensus 111 v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I---~V-~~~g~~~~~lNELe~~~G~lya 186 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI---TV-TAHGEELPELNELEWVDGEIFA 186 (262)
T ss_dssp EEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE---EC-EETTEECCCEEEEEEETTEEEE
T ss_pred EEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE---Ee-ccCCccccccceeEEECCEEEE
Confidence 99987 334444433332344444555777666788999999886543221 11 0112 234456666555554
Q ss_pred EEEecCCCeEEEEECCCCCeEEEecCC------------CCCeEEEEEecCCCEEEEEe
Q 002389 833 ASSSVEGSNIKEWRRHRKPQISIAPEK------------GTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 833 ~s~S~dDgtI~IWDl~~~~~i~~l~~h------------~~~V~slafSpdg~~LaSgS 879 (929)
..+ .++.|.+.|..++++...+.-. ....+.|+|+|+++.|...+
T Consensus 187 n~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 187 NVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 443 4679999999999987766432 23568999999887766655
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.04 E-value=0.002 Score=77.05 Aligned_cols=267 Identities=10% Similarity=0.049 Sum_probs=157.0
Q ss_pred eCCEEEEEEC-CCeEEEEEC-CCCCeeEEEEeccCCC-----------cEEEEEEcCCCCE----EEEEeCCCeEEEEEc
Q 002389 658 YKGLLCSGFS-DGSIKMWDI-KKQSAMLVWDVKEHRK-----------AVTSFSLFEPGES----LLSGSADKTIGVWQM 720 (929)
Q Consensus 658 s~~~LaSGs~-DGtIrIWD~-~~~~~~~i~~l~gH~~-----------~Vtslafspdg~~----LaSgs~DgtIrIWDl 720 (929)
.++.++.++. ++.|.-+|. .+++. +..+..... ....++++|.+.. ++.++.|+.+.-+|.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~--lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTI--LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcE--EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 4788888888 899999999 88864 444432211 0123455444444 888999999999999
Q ss_pred cCCeEEEEEEeccC---CCeEE-eccCCCEEEEEec------CCeEEEEeCCC-cee-eeccCC----------------
Q 002389 721 VQRKLELIEVIATK---EPIRK-LDTYGKTIFASTQ------GHRMKVIDSSR-TLK-DIYRSK---------------- 772 (929)
Q Consensus 721 ~tg~~~~~~~~~h~---~~V~s-~s~~g~~L~sgs~------Dg~V~IWDl~~-~~~-~l~~~~---------------- 772 (929)
.+|+.......... ..+.+ -...+..+++++. ++.|+.+|... ... .+....
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 99987655433211 01111 0112445666653 78999999762 211 111110
Q ss_pred ----------------------CeE-EEEEe--CCEEEEEECC----------------CcEEEEEccCCccceecc--c
Q 002389 773 ----------------------GIK-SMSVV--QGKIYIGCMD----------------SSIQELAVSNNVEREIKA--P 809 (929)
Q Consensus 773 ----------------------~V~-sla~s--dg~llsgs~D----------------g~I~iwDl~tg~~~~i~~--~ 809 (929)
.+. .+++. .+.++.++.+ +.|.-+|..+|+..-... +
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 011 23343 6777777655 378999999887542211 1
Q ss_pred cccccc--CCCCeEEEEEc-CCc---eEEEEEecCCCeEEEEECCCCCeEEEecCC-------------CCCe-------
Q 002389 810 FKSWRL--QSKPINSLVVY-KDW---LYSASSSVEGSNIKEWRRHRKPQISIAPEK-------------GTTI------- 863 (929)
Q Consensus 810 ~~~~~~--~~~~I~sl~~~-~d~---i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h-------------~~~V------- 863 (929)
...|.. ...++. +... .++ ...+.. ..+|.++++|..+++.+....-. ..++
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~-~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHP-DRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEE-CTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEE-CCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 112211 122232 2221 233 223333 36789999999998876543211 1111
Q ss_pred -------------------EEEEEecCCCEEEEEe---------------------------------------CCCcEE
Q 002389 864 -------------------QAMAVVEDFIYLNYNS---------------------------------------SASSLQ 885 (929)
Q Consensus 864 -------------------~slafSpdg~~LaSgS---------------------------------------~DG~I~ 885 (929)
..++++|+..++.... .+|.+.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 2456777766554421 357899
Q ss_pred EEECCCCcEEEEEeCCCCeE-E-EEEcCCEEEEEECCCcEEEeec
Q 002389 886 IWLRGTQQKVGRISAGSKIT-S-LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 886 IWdl~sg~~i~tl~~h~~Vt-s-vs~dg~~LaSgs~DG~I~IWdi 928 (929)
-||..+|+.+-+.....++. . +...+..++.|+.||.++.||.
T Consensus 457 A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 457 AYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp EECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred EEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEEC
Confidence 99999999988776443332 2 5567888888999999999884
No 252
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.04 E-value=2e-05 Score=92.74 Aligned_cols=338 Identities=12% Similarity=0.118 Sum_probs=213.3
Q ss_pred HHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCcee-ccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcch
Q 002389 110 IEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKY-DMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE 188 (929)
Q Consensus 110 l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~ 188 (929)
+...|..|.+ ++...-- .|+..+ .+.+........ .+.+.-+|.-|++.|..+.+++++..+..+|..+.+.+.
T Consensus 78 l~~lv~~l~s-~d~~~q~-~a~~~~---rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 78 VEDIVKGINS-NNLESQL-QATQAA---RKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp HHHHHHHHTS-SCHHHHH-HHHHHH---HHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcC-CCHHHHH-HHHHHH---HHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4555555544 3333222 244333 333332222222 366677888999999999999999999999999999888
Q ss_pred hhhhhhhhcCCCchHHHHHHhhc---ch-hhHH-HHHhcCCC---chhhhhccchhHHHHHHhccccccCcccccccCch
Q 002389 189 SVIEDIKKKGLRLSDLATALKRN---VP-EAAI-LIYLIKPS---PTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP 260 (929)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~v-l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 260 (929)
...+.+.+.| -+.+|+.+|++. +. .|+- |-.+..-. ...+.....+|.|+..+...+.... .+.-.
T Consensus 153 ~~~~~vv~~G-aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~-----~~~~~ 226 (529)
T 3tpo_A 153 EQTKAVVDGG-AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL-----ACGYL 226 (529)
T ss_dssp HHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS-----CHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh-----HHHHH
Confidence 8888888776 366778888874 44 3333 33443322 2345566789999999976442200 11111
Q ss_pred hhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhh
Q 002389 261 AASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACL 340 (929)
Q Consensus 261 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l 340 (929)
..+...+-.+..+.+..... ....++++.|++.+..++.+-+..++..|..+...+..++..+.+.--..+++++
T Consensus 227 ~~a~~~L~nl~~~~~~~~~~-----~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNPAPPL-----DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHHHCCCTTCCCH-----HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhH-----HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 22333444443322211111 1135678888888899999999999888888777666677777776667789999
Q ss_pred hhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcc
Q 002389 341 LQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVF 420 (929)
Q Consensus 341 ~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~y 420 (929)
|.+.+...+..|+..|..|++-+-... +.+-+.|.+.. |...|++..++-+--+|..|-.+=.=.+.....+.
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~----~~i~~~g~l~~---L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~ 374 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQT----QKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 374 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTGGGG---HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHH----HHHhhcccHHH---HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999999987553222 23334566554 44455666666666677777665321112233344
Q ss_pred hHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCc
Q 002389 421 TEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSS 476 (929)
Q Consensus 421 reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~ 476 (929)
...++..|+..|.+. +..+|..|+.||.+|. ..|.+-....|.+ +|.-++
T Consensus 375 ~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~----~~~~~~~~~~l~~-~g~i~~ 424 (529)
T 3tpo_A 375 NHGLVPFLVGVLSKA-DFKTQKAAAWAITNYT----SGGTVEQIVYLVH-CGIIEP 424 (529)
T ss_dssp HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH----HHSCHHHHHHHHH-TTCHHH
T ss_pred hcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH----cCCCHHHHHHHHH-CcCHHH
Confidence 455788888888765 6778999999998864 3454443344443 444333
No 253
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.04 E-value=6.4e-05 Score=85.46 Aligned_cols=277 Identities=16% Similarity=0.081 Sum_probs=190.5
Q ss_pred cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhh-c---ch-hh-HHHHHhcC-
Q 002389 151 MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKR-N---VP-EA-AILIYLIK- 223 (929)
Q Consensus 151 ~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~-~---~~-~~-~vl~~l~~- 223 (929)
+.++.+|..|++.|. +.+++|.+.++..|..+...+...++.+.+.| -+..+..+|+. . +. .| ..|-.+..
T Consensus 103 ~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 103 VIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCN-ILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 445567888888765 56899999999999999988777777776654 47778888874 2 33 22 23444543
Q ss_pred --CCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhc
Q 002389 224 --PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARH 301 (929)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 301 (929)
|......-...+|.|++++..++.. -+..|...|..|....+ .+...+...++++.|+..+..
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~----------v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTD----------VLADACWALSYLSDGPN-----DKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHH----------HHHHHHHHHHHHTSSSH-----HHHHHHHHTTTHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHH----------HHHHHHHHHHHHHCCCc-----HHHHHHHHcCcHHHHHHHHCC
Confidence 4333333358999999999754321 13556667777654321 234445567889999999988
Q ss_pred cChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchh
Q 002389 302 QNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNIN 381 (929)
Q Consensus 302 ~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~ 381 (929)
++.+-|..++..|-.....+...+..+.+.--..+++++|.+.+...|..|+..|..|..-+...... +.+.|
T Consensus 246 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~----~~~~~--- 318 (450)
T 2jdq_A 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT----VIDAN--- 318 (450)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH----HHHTT---
T ss_pred CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH----HHHCC---
Confidence 88888999988888776665555555555445677888999988899999999999987643322222 22333
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCC-CcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 382 ILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGK-SVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 382 ~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~-s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
.+..|+..|+...++-+--++..|-++=.-.+|... .+..+.++..|++.|+.. ++.+|..|+.||.++.
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 456777788888888888888777776432233211 233456889999998865 7789999999997764
No 254
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.02 E-value=2.5e-05 Score=91.51 Aligned_cols=329 Identities=13% Similarity=0.076 Sum_probs=214.2
Q ss_pred HHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCC-CceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhh
Q 002389 107 LEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKT-GVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIIL 185 (929)
Q Consensus 107 ~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~ 185 (929)
.+++...|..|. |++..... .|+..+.++ +.+.+ .....+....+|..|++.|..+.+++|.+.++..|..+..
T Consensus 73 ~~~l~~lv~~L~-s~~~~~~~-~A~~~L~~l---~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVY-SDDNNLQL-EATTQFRKL---LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHT-SSCHHHHH-HHHHHHHHH---HTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCHHHHH-HHHHHHHHH---hcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 345666777774 44433333 344444444 23332 2222355667788999998877669999999999999999
Q ss_pred cchhhhhhhhhcCCCchHHHHHHhhc---ch-hhHH-HHHhcCCC---chhhhhccchhHHHHHHhccccccCccccccc
Q 002389 186 ANESVIEDIKKKGLRLSDLATALKRN---VP-EAAI-LIYLIKPS---PTEIKTLELLPTLVEVICTSKLYKGKLESVRL 257 (929)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~v-l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (929)
.+...++.+.+. .-+..+..+|+.. +. .|+- |-.+.... ...+.....+|.|++.+...... .
T Consensus 148 ~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~-~------- 218 (528)
T 4b8j_A 148 GTSENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL-S------- 218 (528)
T ss_dssp SCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCH-H-------
T ss_pred CCHHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCH-H-------
Confidence 877777777665 4577788888773 43 3333 33343222 23455667899999999532211 1
Q ss_pred CchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccch
Q 002389 258 TPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPL 337 (929)
Q Consensus 258 ~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~ 337 (929)
=+..|...|-.|..+.. +. ......+++..|++.+..++.+-+..++..|......+......+.+.--..++
T Consensus 219 -v~~~a~~~L~~L~~~~~---~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 219 -MLRNATWTLSNFCRGKP---QP---SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp -HHHHHHHHHHHHHCSSS---CC---CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHHHcCCC---CC---cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 13667777777765431 11 112247889999999999999999999999888776666665666666667889
Q ss_pred hhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcc-cchhhHHHHHHHhhhccccCC-C
Q 002389 338 ACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQL-QSDYQLLAANLLLQLDTLENT-T 415 (929)
Q Consensus 338 ~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~-~~~~~~~~a~lllqld~l~~~-~ 415 (929)
+++|...+...+..|+..|..|..-+.... +.+-+.|. +..|+..|+.. .++-+--++..|-.+=. +.+ .
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~~~---l~~L~~lL~~~~~~~v~~~A~~~L~nl~~-~~~~~ 363 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQT----QCIIDHQA---LPCLLSLLTQNLKKSIKKEACWTISNITA-GNKDQ 363 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHTTTH---HHHHHHHHHSCCCHHHHHHHHHHHHHHHT-SCHHH
T ss_pred HHHHcCCChhHHHHHHHHHHHHHcCCHHHH----HHHHHhhh---HHHHHHHHcCCCcHHHHHHHHHHHHHHHC-CCHHH
Confidence 999999999999999999999987443222 22334444 45566667766 66666666666655532 222 1
Q ss_pred CCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHH
Q 002389 416 GKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVK 469 (929)
Q Consensus 416 ~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk 469 (929)
...++...++..|++.|... ++.+|..|+.||.+|.- .|.+-....|.+
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~----~~~~~~~~~l~~ 412 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATS----GGSHDQIKYLVS 412 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH----HSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 22344557788999999876 78899999999988753 355544444443
No 255
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.01 E-value=0.00012 Score=83.22 Aligned_cols=316 Identities=13% Similarity=0.082 Sum_probs=201.8
Q ss_pred HHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchH-HHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcch
Q 002389 110 IEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQD-VILEQLLTAISASKEETVIRASVSILTTIILANE 188 (929)
Q Consensus 110 l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~ 188 (929)
+...+..| .|++....+ .|+..+.++-.. ..+|.... +.+. .++..|++.|....+++|...+..+|..+...+.
T Consensus 22 l~~l~~~l-~s~~~~~r~-~A~~~L~~l~~~-~~~~~~~~-~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMI-FSKSPEQQL-SATQKFRKLLSK-EPNPPIDE-VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHH-HSSCHHHHH-HHHHHHHHHHHS-SSSCCHHH-HHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHh-cCCCHHHHH-HHHHHHHHHhcC-CCCCcHHH-HHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 33444444 355555455 555555555321 12333322 3333 7888999988777689999999999999998776
Q ss_pred hhhhhhhhcCCCchHHHHHHhhc---ch-hhH-HHHHhcCCCc---hhhhhccchhHHHHHHhccccccCcccccccCch
Q 002389 189 SVIEDIKKKGLRLSDLATALKRN---VP-EAA-ILIYLIKPSP---TEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP 260 (929)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~-vl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 260 (929)
...+.+.+.| -+..+..+|++. +. .|+ +|-.+....+ ..+.....+|.|++.+...... . =+
T Consensus 98 ~~~~~~~~~~-~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-~--------v~ 167 (450)
T 2jdq_A 98 LQTRIVIQAG-AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-T--------MT 167 (450)
T ss_dssp HHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH-H--------HH
T ss_pred HHHHHHHhCC-CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH-H--------HH
Confidence 6666665544 466677788773 43 333 3444444322 2344568999999999842211 1 14
Q ss_pred hhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhh
Q 002389 261 AASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACL 340 (929)
Q Consensus 261 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l 340 (929)
..|+..|-.|..+.+.... ..+ ..++++.|++.+..++.+-+..++..|....+.+...+..+.+.--..+++++
T Consensus 168 ~~a~~~L~~l~~~~~~~~~----~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 242 (450)
T 2jdq_A 168 RNAVWALSNLCRGKSPPPE----FAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242 (450)
T ss_dssp HHHHHHHHHHHCCSSSCCC----GGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCC----HHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHH
Confidence 6777778787654322111 112 26788999999998888888888888877766554555566655567889999
Q ss_pred hhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCC-CCCc
Q 002389 341 LQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTT-GKSV 419 (929)
Q Consensus 341 ~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~-~~s~ 419 (929)
|...+...+..|+..|..|..-+-.. .+.+.+.| .+..|+.+|+...++-+--++..|-++=. +.+. ...+
T Consensus 243 l~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~---~l~~L~~ll~~~~~~vr~~a~~~L~~l~~-~~~~~~~~~ 314 (450)
T 2jdq_A 243 LMHNDYKVVSPALRAVGNIVTGDDIQ----TQVILNCS---ALQSLLHLLSSPKESIKKEACWTISNITA-GNRAQIQTV 314 (450)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHTTT---HHHHHHHHTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHH
T ss_pred HCCCchhHHHHHHHHHHHHhhCChHH----HHHHHHCc---cHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99889999999999999987643221 12223334 45667777777666666556665544421 1111 1123
Q ss_pred chHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 420 FTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 420 yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
..+.++..|++.|... ++.+|..|+.+|.+|.-
T Consensus 315 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 315 IDANIFPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 3346788899999865 77899999999988853
No 256
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.99 E-value=3.6e-05 Score=80.54 Aligned_cols=236 Identities=15% Similarity=0.123 Sum_probs=160.9
Q ss_pred HHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccchhH
Q 002389 158 EQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPT 237 (929)
Q Consensus 158 ~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~~~ 237 (929)
+-+++-| .|.++++++.++..|..+.+.++..++.+. ....+|.
T Consensus 15 ~~~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-----------------------------------~~g~i~~ 58 (252)
T 4db8_A 15 PQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVI-----------------------------------DAGALPA 58 (252)
T ss_dssp HHHHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HTTHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHH-----------------------------------HcCcHHH
Confidence 3444443 467788888888887777666555554442 3367888
Q ss_pred HHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhh
Q 002389 238 LVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKC 317 (929)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c 317 (929)
|++.+..++.. -+..|...|..|..+.+ ++...+...|+++.|++.++.++.+-|..++..|-..
T Consensus 59 L~~lL~~~~~~----------v~~~a~~~L~~l~~~~~-----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 59 LVQLLSSPNEQ----------ILQEALWALSNIASGGN-----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp HHHGGGCSCHH----------HHHHHHHHHHHHTTSCH-----HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHH----------HHHHHHHHHHHHhcCCH-----HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 88888765421 14677778888765432 3455666789999999999998888888888877765
Q ss_pred hhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchh
Q 002389 318 IQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDY 397 (929)
Q Consensus 318 ~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~ 397 (929)
...+......+.+.--..+++++|.+.+...+..|+..|..|..-+... .+.+.+.|. +..|+-.|+...++-
T Consensus 124 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~---i~~L~~ll~~~~~~v 196 (252)
T 4db8_A 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVIDAGA---LPALVQLLSSPNEQI 196 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHHTTC---HHHHHHGGGCSSHHH
T ss_pred hcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH----HHHHHHCCC---HHHHHHHHCCCCHHH
Confidence 5544444377777767889999999999999999999999998655322 222334454 455666677766666
Q ss_pred hHHHHHHHhhhccccCCC-CCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 398 QLLAANLLLQLDTLENTT-GKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 398 ~~~~a~lllqld~l~~~~-~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
+--++..|-.|=. .+|. +.-+..+.+++.|++.|... ++.+|..|+.+|.+|..
T Consensus 197 ~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 197 LQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHhc
Confidence 6666666655421 2232 22333445888888888765 77899999999999864
No 257
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.91 E-value=0.00011 Score=86.12 Aligned_cols=313 Identities=12% Similarity=0.086 Sum_probs=201.2
Q ss_pred HHHHHhhhhhcccccccchhhhHHHHHHHHHhccC--CCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhc
Q 002389 109 IIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNS--KTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILA 186 (929)
Q Consensus 109 ~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~ 186 (929)
.+...|..|. |++..... .|+..+.++ +.. +|.. ..+.+..+|..|++.|..+.+++|...++..|..+...
T Consensus 88 ~i~~lv~~L~-s~~~~~~~-~A~~~L~~l---l~~~~~~~~-~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 88 ELPQMTQQLN-SDDMQEQL-SATVKFRQI---LSREHRPPI-DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161 (530)
T ss_dssp CHHHHHHHHS-CSSHHHHH-HHHHHHHHH---TCCSSSCSH-HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHc-CCCHHHHH-HHHHHHHHH---hCCCCCccH-HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 3555566664 34433233 344444443 222 1221 22455667788888876666899999999999999988
Q ss_pred chhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHH-HhcCC---CchhhhhccchhHHHHHHhccccccCcccccccC
Q 002389 187 NESVIEDIKKKGLRLSDLATALKRN---VP-EAAILI-YLIKP---SPTEIKTLELLPTLVEVICTSKLYKGKLESVRLT 258 (929)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~-~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (929)
+....+.+.+.| -+..+..+|++. +. .|+-.+ .+... ....+.....+|.|++.+...+.. .
T Consensus 162 ~~~~~~~~~~~g-~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~----v----- 231 (530)
T 1wa5_B 162 TSAQTKVVVDAD-AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS----L----- 231 (530)
T ss_dssp CHHHHHHHHHTT-CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHH----H-----
T ss_pred CHHHHHHHHHCC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHH----H-----
Confidence 777777776554 478888888873 43 343333 34332 223445568999999999863211 1
Q ss_pred chhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchh
Q 002389 259 PPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLA 338 (929)
Q Consensus 259 p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~ 338 (929)
+..|+..|-.|..+.+.... .....+++..|++.+..++.+-+..++..|..........+..+.+.--...++
T Consensus 232 -~~~a~~~L~~L~~~~~~~~~-----~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 232 -IRTATWTLSNLCRGKKPQPD-----WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp -HHHHHHHHHHHHCCSSSCCC-----HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred -HHHHHHHHHHHhCCCCCCCc-----HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 35677777777654322211 223467888999999888888888888888776655444455555544567889
Q ss_pred hhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCC-CC
Q 002389 339 CLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTT-GK 417 (929)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~-~~ 417 (929)
++|...+...+..|+..|..|..-+..... .+.+.| .+..|+..|+...++-+--++..|-.+=. +.|. ..
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~---~l~~L~~lL~~~~~~vr~~A~~aL~~l~~-~~~~~~~ 377 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQ----VVINAG---VLPALRLLLSSPKENIKKEACWTISNITA-GNTEQIQ 377 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHH----HHHHTT---HHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred HHHCCCChhhHHHHHHHHHHHHcCCHHHHH----HHHHcc---hHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999998999999999999998865432222 222334 45567777887766666666666655422 1111 11
Q ss_pred CcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 418 SVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 418 s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
.+..+.++..|+..|... ++.+|..|+.||.+|.
T Consensus 378 ~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVA-EYKTKKEACWAISNAS 411 (530)
T ss_dssp HHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 233346788999999754 7789999999998774
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.91 E-value=0.002 Score=77.99 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=149.1
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCC----CcEEE-EEEcCCCCEEEEEeC------CCeEEEEEccCC
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHR----KAVTS-FSLFEPGESLLSGSA------DKTIGVWQMVQR 723 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~----~~Vts-lafspdg~~LaSgs~------DgtIrIWDl~tg 723 (929)
+.+.++.++.++.||.|..+|..+++. +..+.... ..+.+ ... .+..++.+.. +|.|..+|..+|
T Consensus 113 ~~~~~~~v~v~~~dg~l~alD~~tG~~--~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 113 VALWGDKVYVGTLDGRLIALDAKTGKA--IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp CEEEBTEEEEECTTSEEEEEETTTCCE--EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred eEEECCEEEEEcCCCEEEEEECCCCCE--eeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence 344678899999999999999999875 44443211 11111 011 1334555443 589999999999
Q ss_pred eEEEEEEeccCCC--------------------------------eEEeccCCCEEEEEecCCe----------------
Q 002389 724 KLELIEVIATKEP--------------------------------IRKLDTYGKTIFASTQGHR---------------- 755 (929)
Q Consensus 724 ~~~~~~~~~h~~~--------------------------------V~s~s~~g~~L~sgs~Dg~---------------- 755 (929)
+...........+ ..++.+..+.++.++.++.
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 8765543211000 1245567788888877663
Q ss_pred ---EEEEeCCC-cee-eecc--C--------CCeEEEEEe-CCE----EEEEECCCcEEEEEccCCccceeccccc-ccc
Q 002389 756 ---MKVIDSSR-TLK-DIYR--S--------KGIKSMSVV-QGK----IYIGCMDSSIQELAVSNNVEREIKAPFK-SWR 814 (929)
Q Consensus 756 ---V~IWDl~~-~~~-~l~~--~--------~~V~sla~s-dg~----llsgs~Dg~I~iwDl~tg~~~~i~~~~~-~~~ 814 (929)
|..+|... ... .+.. + .......+. +|+ ++.++.+|.++++|..+|+......... .|.
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 88888762 211 1111 1 112222222 664 7788999999999999987541110000 010
Q ss_pred c-----CCCC------------------------eEEEEEcCCc-eEEEE------------------------------
Q 002389 815 L-----QSKP------------------------INSLVVYKDW-LYSAS------------------------------ 834 (929)
Q Consensus 815 ~-----~~~~------------------------I~sl~~~~d~-i~~~s------------------------------ 834 (929)
. ...+ -..+++.|+. .+.+.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0 0000 0012333321 11110
Q ss_pred ----EecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeE----E
Q 002389 835 ----SSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKIT----S 906 (929)
Q Consensus 835 ----~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vt----s 906 (929)
..+.++.|..||..+++.+-....+ .......+...+.+++.|+.||.++.||..+|+.+..+..+..+. .
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~ 507 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT 507 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE
Confidence 0112378999999999876555433 233334455578889999999999999999999999998764322 1
Q ss_pred EEEcCC-EEEEEE
Q 002389 907 LLTAND-IVLCGT 918 (929)
Q Consensus 907 vs~dg~-~LaSgs 918 (929)
...+|+ +++.++
T Consensus 508 ~~~~G~~yva~~~ 520 (668)
T 1kv9_A 508 FELAGRQYVAIMA 520 (668)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 234565 444443
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.90 E-value=0.0023 Score=69.57 Aligned_cols=228 Identities=8% Similarity=0.007 Sum_probs=138.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEec------------------cCCCeEE--eccCCCEEEEEe
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIA------------------TKEPIRK--LDTYGKTIFAST 751 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~------------------h~~~V~s--~s~~g~~L~sgs 751 (929)
....+++|.++|+.++++..++.|..||..++......... ....... +.+++..++++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 44567889999987888888999999998776543222110 0112343 344345677776
Q ss_pred cCCeEEEEeCCC-ceeeecc------CCCeEEEEEe--CCEEEEEECC------------------CcEEEEEccCCccc
Q 002389 752 QGHRMKVIDSSR-TLKDIYR------SKGIKSMSVV--QGKIYIGCMD------------------SSIQELAVSNNVER 804 (929)
Q Consensus 752 ~Dg~V~IWDl~~-~~~~l~~------~~~V~sla~s--dg~llsgs~D------------------g~I~iwDl~tg~~~ 804 (929)
..+.+..+|... ....+.. ......+++. +|.++.+... +.+..||..++...
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 666788888763 2222221 1235677775 5777776532 56888887665432
Q ss_pred eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC--eEEEecCCCCCeEEEEEecCCCEEEEEeC--
Q 002389 805 EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP--QISIAPEKGTTIQAMAVVEDFIYLNYNSS-- 880 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~--~i~~l~~h~~~V~slafSpdg~~LaSgS~-- 880 (929)
... ........+++++++..+.......+.|..|+..+.. ....+....+ ...++++++|.+.++...
T Consensus 179 ~~~-------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 179 LLL-------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp EEE-------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred Eec-------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence 221 1123345678888865333232245789999987521 1111111223 778999999997777654
Q ss_pred --------CCcEEEEECCCCcEEEEEeCC-----CCeEEEEEcCCEEE-EEECCCcEEEeec
Q 002389 881 --------ASSLQIWLRGTQQKVGRISAG-----SKITSLLTANDIVL-CGTETGLIKGWIP 928 (929)
Q Consensus 881 --------DG~I~IWdl~sg~~i~tl~~h-----~~Vtsvs~dg~~La-Sgs~DG~I~IWdi 928 (929)
.+.|..+|. .++.+..+... ..++++.+.+..|+ +...++.|..+++
T Consensus 251 ~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp TSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred cccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence 467888887 47777777644 23666666655444 4446778888764
No 260
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.89 E-value=4.5e-05 Score=79.28 Aligned_cols=199 Identities=17% Similarity=0.133 Sum_probs=151.7
Q ss_pred ccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHH
Q 002389 232 LELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLA 311 (929)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 311 (929)
|+-+|.|++.+.+++.. . +..|...|..+..+.+ ++...+...|+++.|+..++.++.+-+..++
T Consensus 1 ~~~i~~L~~~L~~~~~~-~---------~~~a~~~L~~l~~~~~-----~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~ 65 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSE-T---------QKEAARDLAEIASGPA-----SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 65 (252)
T ss_dssp CCHHHHHHHHTTCSCHH-H---------HHHHHHHHHHHHTSCH-----HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcHHHHHHHHcCCCHH-H---------HHHHHHHHHHHhcCCc-----HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 35688999999875522 1 4667778888866442 4556667789999999999999988899999
Q ss_pred HHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhh
Q 002389 312 TILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQ 391 (929)
Q Consensus 312 ~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq 391 (929)
..|......+..+|..+.+.--..+++++|.+.+...+..|+..|..|..-+......+ .+.| .+..|+..|+
T Consensus 66 ~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~---~i~~L~~~l~ 138 (252)
T 4hxt_A 66 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI----VDAG---GVEVLVKLLT 138 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH----HHTT---HHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH----HHCC---CHHHHHHHHc
Confidence 99998888878899999988889999999999999999999999999986544323222 3344 3566777778
Q ss_pred cccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 392 QLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 392 ~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
...++-+--++..|-.|=.-.+..+..+..+.+++.|++.|.. .++.+|..|+.+|.+|..
T Consensus 139 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 199 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHc
Confidence 7777777777777766632222223455667799999999985 578999999999999984
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.87 E-value=0.0013 Score=75.00 Aligned_cols=218 Identities=11% Similarity=0.018 Sum_probs=134.7
Q ss_pred EEEEEECCCeEEEEECCCC--CeeEEEEec------c-CCCcEEEEEEcCCCCEEEEEeCC------CeEEEEEccCCeE
Q 002389 661 LLCSGFSDGSIKMWDIKKQ--SAMLVWDVK------E-HRKAVTSFSLFEPGESLLSGSAD------KTIGVWQMVQRKL 725 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~--~~~~i~~l~------g-H~~~Vtslafspdg~~LaSgs~D------gtIrIWDl~tg~~ 725 (929)
.+++|..+++|.|+|+.+. +.+...++. . ....-..+...|+| .++++..+ |.|.+.|..+++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 5667888999999999743 334455552 1 11244567788999 76666555 7899999998886
Q ss_pred EEEEEeccCC-C-e--EEeccCCCEEEEEe-------------------cCCeEEEEeCCCc--eeeeccC---CCeEEE
Q 002389 726 ELIEVIATKE-P-I--RKLDTYGKTIFAST-------------------QGHRMKVIDSSRT--LKDIYRS---KGIKSM 777 (929)
Q Consensus 726 ~~~~~~~h~~-~-V--~s~s~~g~~L~sgs-------------------~Dg~V~IWDl~~~--~~~l~~~---~~V~sl 777 (929)
......+... . - .-++++++.+++.. .+++|.+||+... ..++... .....+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 5444332121 1 1 23588899888875 3689999999742 3333332 234455
Q ss_pred EE--e-CCE-EEEEE------CCCcEEEEEccCCccceec---cccccccc-----------CCCCeEEEEEcCCceEEE
Q 002389 778 SV--V-QGK-IYIGC------MDSSIQELAVSNNVEREIK---APFKSWRL-----------QSKPINSLVVYKDWLYSA 833 (929)
Q Consensus 778 a~--s-dg~-llsgs------~Dg~I~iwDl~tg~~~~i~---~~~~~~~~-----------~~~~I~sl~~~~d~i~~~ 833 (929)
.| + +++ .++++ .+++|.+|....|.....+ .+...... .......+.+++++.++.
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY 336 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY 336 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence 55 5 565 55544 5668877766554321111 11110000 024567888999998877
Q ss_pred EEecCCCeEEEEECCC---CCeEEEecCCC--------------CCeEEEEEecCCCEEEEEe
Q 002389 834 SSSVEGSNIKEWRRHR---KPQISIAPEKG--------------TTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 834 s~S~dDgtI~IWDl~~---~~~i~~l~~h~--------------~~V~slafSpdg~~LaSgS 879 (929)
...-..+.|.+||+.. .+.+....... ..-..+.++|||++|+++.
T Consensus 337 VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 337 LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 6666678999999752 23333332210 1357899999999998887
No 262
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.85 E-value=7.1e-05 Score=76.07 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=146.6
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLAT 312 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 312 (929)
...|.|+..+.+++.. . +.+|...|..|..+. ..+...+...|+++.|++.++.++.+-+..++.
T Consensus 12 ~~~~~l~~LL~s~~~~-v---------~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~ 76 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQ-E---------LQSALRKLSQIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76 (210)
T ss_dssp -CHHHHHHHTTCSCHH-H---------HHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred chhHHHHHHhcCCCHH-H---------HHHHHHHHHHHHcCC-----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4566777777765432 1 467777888875433 244556667899999999999999999999999
Q ss_pred HHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhc
Q 002389 313 ILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQ 392 (929)
Q Consensus 313 ~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~ 392 (929)
.|......+...|..+.+.--..+++++|.+.+...+..|+..|..|..-+...... +-+.| .+..|+..|+.
T Consensus 77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~----~~~~~---~i~~L~~ll~~ 149 (210)
T 4db6_A 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA----VIDAG---ALPALVQLLSS 149 (210)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH----HHHTT---HHHHHHHHTTC
T ss_pred HHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH----HHHcC---cHHHHHHHHcC
Confidence 999888778888888888888899999999999999999999999988644322222 23344 45667777787
Q ss_pred ccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 393 LQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 393 ~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
..++-+--++..|..|=.-.++.+.-+....+++.|++.|.. +++.+|..|+.+|-+|..
T Consensus 150 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 777777777777766643223334445556789999998874 588999999999998874
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.81 E-value=0.0036 Score=74.37 Aligned_cols=246 Identities=11% Similarity=0.014 Sum_probs=137.6
Q ss_pred EEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCC--cEEE-EEEcCCCCEEEEEeC------CCeEEEEEccCCeE
Q 002389 655 LIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRK--AVTS-FSLFEPGESLLSGSA------DKTIGVWQMVQRKL 725 (929)
Q Consensus 655 l~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~--~Vts-lafspdg~~LaSgs~------DgtIrIWDl~tg~~ 725 (929)
+++.++.++.++.|+.+..+|..+++..-...+..+.. .+.+ ... .+..++.++. ++.|..+|..+|+.
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 188 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence 34568899999999999999999987532222322211 1211 011 2345565554 79999999999987
Q ss_pred EEEEEeccCC---------------------------------------CeEEeccCCCEEEEEecC-------------
Q 002389 726 ELIEVIATKE---------------------------------------PIRKLDTYGKTIFASTQG------------- 753 (929)
Q Consensus 726 ~~~~~~~h~~---------------------------------------~V~s~s~~g~~L~sgs~D------------- 753 (929)
.......... ...++.+....++.++.+
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 6544332110 011344555677766532
Q ss_pred ---CeEEEEeCCC-ce-eeecc--C--------CCeEEEEE-eCCE----EEEEECCCcEEEEEccCCccceeccccc--
Q 002389 754 ---HRMKVIDSSR-TL-KDIYR--S--------KGIKSMSV-VQGK----IYIGCMDSSIQELAVSNNVEREIKAPFK-- 811 (929)
Q Consensus 754 ---g~V~IWDl~~-~~-~~l~~--~--------~~V~sla~-sdg~----llsgs~Dg~I~iwDl~tg~~~~i~~~~~-- 811 (929)
+.|..+|... .. -.+.. + ....-+.. .+|+ ++.++.+|.++.+|..+|+..-......
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 2588888762 21 11111 1 01111222 2663 5668889999999999887532211000
Q ss_pred ccc-----cCCCCe--------------------------EEEEEcCCc-eEEEEE------------------------
Q 002389 812 SWR-----LQSKPI--------------------------NSLVVYKDW-LYSASS------------------------ 835 (929)
Q Consensus 812 ~~~-----~~~~~I--------------------------~sl~~~~d~-i~~~s~------------------------ 835 (929)
.|. ..+.++ ..++++|+. .+.+..
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 000 000111 112333321 111111
Q ss_pred -----e------cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Q 002389 836 -----S------VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSK 903 (929)
Q Consensus 836 -----S------~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~ 903 (929)
+ +.++.+..||..+++..-..... ..+.+..+...+..++.++.||.++.||..+|+.+.++..+..
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 1 13478999999999876555432 2233333334566777789999999999999999999986644
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.81 E-value=0.0041 Score=65.40 Aligned_cols=190 Identities=10% Similarity=0.011 Sum_probs=121.3
Q ss_pred eEEEEeccCC--CcEEEEEEcCCCCEEEEEeCCC--eEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCeE
Q 002389 682 MLVWDVKEHR--KAVTSFSLFEPGESLLSGSADK--TIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRM 756 (929)
Q Consensus 682 ~~i~~l~gH~--~~Vtslafspdg~~LaSgs~Dg--tIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V 756 (929)
+.+.++ .|. .-...+.|++ +....|.+.+| .|+.+|+.+|+.......+...--..+...++.++..+ .++.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 345566 554 3467899986 55566767654 89999999998765544333222234556677777665 57899
Q ss_pred EEEeCCC--ceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCC---CCeEEEEEcCCceE
Q 002389 757 KVIDSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQS---KPINSLVVYKDWLY 831 (929)
Q Consensus 757 ~IWDl~~--~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~---~~I~sl~~~~d~i~ 831 (929)
.+||... ...++.....-..++...++++.+..++.|.++|..+.+..... .+ ..++ ..++.+....+.++
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I---~V-~~~g~~~~~lNeLe~~~G~ly 163 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSI---KV-TAGGRPLDNLNELEWVNGELL 163 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEE---EC-EETTEECCCEEEEEEETTEEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEE---EE-ccCCcccccceeeEEeCCEEE
Confidence 9999873 34444443333455555566777777889999999886543221 11 0111 34456666666666
Q ss_pred EEEEecCCCeEEEEECCCCCeEEEecCC-------------CCCeEEEEEecCCCEEEEEe
Q 002389 832 SASSSVEGSNIKEWRRHRKPQISIAPEK-------------GTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 832 ~~s~S~dDgtI~IWDl~~~~~i~~l~~h-------------~~~V~slafSpdg~~LaSgS 879 (929)
...+ .+..|.+.|..+++++..+.-. ....+.|+++|+++.|...+
T Consensus 164 anvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 164 ANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5544 4568999999999987765411 23568999999776665554
No 265
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.79 E-value=0.00041 Score=81.54 Aligned_cols=276 Identities=15% Similarity=0.119 Sum_probs=188.8
Q ss_pred cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc-ch--------hhHHHHH-
Q 002389 151 MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-VP--------EAAILIY- 220 (929)
Q Consensus 151 ~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~-~~--------~~~vl~~- 220 (929)
+...-.|.-|++ |..|.+++|.+.++..|..+...++..+..+.+.|- +.++..+|+.. .. .++-.+.
T Consensus 158 vv~~Gaip~Lv~-LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~-i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 158 VVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA-IDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC-HHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCC-cHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 445556677776 678889999999999999999888888888887764 77888877652 11 1222222
Q ss_pred hc---CCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHH
Q 002389 221 LI---KPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLD 297 (929)
Q Consensus 221 l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (929)
+. .|.+.-...-..+|.|++.+..++.. - +..|...|-.|..+.+ .+...+...|++..|+.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~-v---------~~~a~~aL~~l~~~~~-----~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPE-V---------LADSCWAISYLTDGPN-----ERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHH-H---------HHHHHHHHHHHHSSCH-----HHHHHHHTTTCHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHH-H---------HHHHHHHHHHhhhhhh-----hhHHHHHhccchHHHHH
Confidence 22 23333333346889999999765532 1 2445556666654332 34445567789999999
Q ss_pred HhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhcc
Q 002389 298 VARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKE 377 (929)
Q Consensus 298 ~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~ 377 (929)
.+..++.+-+..++..|-.....+...+..|.+.--..++++||.+.....+..|...|.-|..-+.... +.+.+.
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~----~~v~~~ 376 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI----QQVVNH 376 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH----HHHHHT
T ss_pred HhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH----HHHHhc
Confidence 9999999989999998888877777777888888788999999999999999999999998876554322 223344
Q ss_pred CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCC-CCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhc
Q 002389 378 GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTG-KSVFTEEAMQVILKAVASEESSTMQLLSSFILSNI 451 (929)
Q Consensus 378 ~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~-~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l 451 (929)
|. +..|+..|+...++-+--+|..|-.|=.=++|.. .-+-...+++.|++-|++. +++++..+.+||-++
T Consensus 377 g~---i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 377 GL---VPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNI 447 (529)
T ss_dssp TH---HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred Cc---HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 54 4566677778777777666665544422122211 1122344788888888765 577778888888765
No 266
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.77 E-value=7.2e-05 Score=81.49 Aligned_cols=205 Identities=15% Similarity=0.103 Sum_probs=147.4
Q ss_pred cchhHHHHHHhccccccCccc---ccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHH-HhhccChHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLE---SVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLD-VARHQNLEELI 308 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~e~~ 308 (929)
++++.+++||.+.... .... ..-..-+..|+..|..++...| ++..+...|++.-|+. .++.++.+-|.
T Consensus 28 ~~mk~~l~vl~~~~~~-~~~~~~~~~~~e~k~~Al~~L~~lv~~~d------na~~~~~~G~l~~Lv~~lL~s~~~~vr~ 100 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPP-TAGEAEQAADQQEREGALELLADLCENMD------NAADFCQLSGMHLLVGRYLEAGAAGLRW 100 (296)
T ss_dssp HHHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHTSHH------HHHHHHHTTHHHHHHHTTTTCSSHHHHH
T ss_pred HHHHHHHHHHhCCCcc-cccccccCCCHHHHHHHHHHHHHHHhChh------hHHHHHHcCCHHHHHHHHHcCCCHHHHH
Confidence 5667788888864211 0000 0001114556777777766443 5666677899999999 88999999999
Q ss_pred HHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcC-CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHH
Q 002389 309 SLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILK 387 (929)
Q Consensus 309 ~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~-~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l 387 (929)
.|+..|-.+.+-+-.||..|.+.=-..|+++||.+. ....+..|+.-|+-|.+=+......|+. .|+ +-.|+
T Consensus 101 ~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~----~gg---i~~L~ 173 (296)
T 1xqr_A 101 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR----LDG---FSVLM 173 (296)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH----TTH---HHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH----CCC---HHHHH
Confidence 999999999999899999999998899999999975 7788999999999888755543444443 444 45667
Q ss_pred HHhhcccchhhHHHHHHHhhhccccCC-CCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 388 LSLQQLQSDYQLLAANLLLQLDTLENT-TGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 388 ~~lq~~~~~~~~~~a~lllqld~l~~~-~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
..|+...++=+--+|..|-.|=- ++| .+.-+-.+.++..|++-|++. +..+|+.|++||.+|..
T Consensus 174 ~lL~~~d~~v~~~A~~aLs~L~~-~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 174 RAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHh-CChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHh
Confidence 77787777766666666654311 133 334455667899999999876 67889999999988753
No 267
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.76 E-value=0.017 Score=61.62 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=123.6
Q ss_pred CCCEEEEEEeC-CEEEEEEC---CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCC
Q 002389 649 SGAVTALIYYK-GLLCSGFS---DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQR 723 (929)
Q Consensus 649 ~~~Vtsl~fs~-~~LaSGs~---DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg 723 (929)
......+.|++ +.|+.++. ++.|++.|..+++......+..+. ....+++. |+.|+ +.-.++.+.++|..+.
T Consensus 20 ~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 20 YAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp TCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred CCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 34568999994 76665543 689999999998753222233332 22345554 55554 4456889999999998
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeeccC------CCeEEEEEeCCEEEEEE-CCCcEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYRS------KGIKSMSVVQGKIYIGC-MDSSIQ 794 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~~------~~V~sla~sdg~llsgs-~Dg~I~ 794 (929)
+.......+ ...-..++++++.++++..++.|.++|... ....+.-. ...+.+.+.+|++++.. .++.|.
T Consensus 97 ~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 97 SNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred cEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEE
Confidence 866554434 122345788898888888888999999873 23333221 23667788889988766 478999
Q ss_pred EEEccCCccceeccccccc-------ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC
Q 002389 795 ELAVSNNVEREIKAPFKSW-------RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR 849 (929)
Q Consensus 795 iwDl~tg~~~~i~~~~~~~-------~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~ 849 (929)
+.|..+++........... .......+.+++++++..+...+...+.+...++..
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999998754322110000 011235678888887654444443445676666543
No 268
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.73 E-value=0.017 Score=60.65 Aligned_cols=212 Identities=9% Similarity=0.052 Sum_probs=130.6
Q ss_pred CEEEEEEe--CCEEE-EEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEE
Q 002389 651 AVTALIYY--KGLLC-SGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLE 726 (929)
Q Consensus 651 ~Vtsl~fs--~~~La-SGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~ 726 (929)
.+..++|+ ++.|+ +-..++.|..++..+... ...+........+++++|++..|+ +-...+.|.+++.+.....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 46788897 34544 555678999999987643 222222335678999999876655 4455788999998654322
Q ss_pred EEEEeccCCCe-EEeccCCCEEEEEecC---CeEEEEeCCCceee-ec--cCCCeEEEEEe--CCEEEEEE-CCCcEEEE
Q 002389 727 LIEVIATKEPI-RKLDTYGKTIFASTQG---HRMKVIDSSRTLKD-IY--RSKGIKSMSVV--QGKIYIGC-MDSSIQEL 796 (929)
Q Consensus 727 ~~~~~~h~~~V-~s~s~~g~~L~sgs~D---g~V~IWDl~~~~~~-l~--~~~~V~sla~s--dg~llsgs-~Dg~I~iw 796 (929)
.....+...+- .++++++..++.+... +.|..++.++.... +. .......++++ ++.++.+. ..+.|..+
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 21111212221 2467767777776643 68888888753322 22 23457788887 35666554 56789999
Q ss_pred EccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCC-CCeEEEEEecCCC
Q 002389 797 AVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKG-TTIQAMAVVEDFI 873 (929)
Q Consensus 797 Dl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-~~V~slafSpdg~ 873 (929)
|..++....+. . .......+....+.++.+.+ .++.|..+|..+++.+..+.... .....+++.|++.
T Consensus 195 ~~~g~~~~~~~------~-~~~~P~gi~~d~~~lyva~~--~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 195 NPAQPGRRKVL------E-GLQYPFAVTSYGKNLYYTDW--KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEEEE------E-CCCSEEEEEEETTEEEEEET--TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ecCCCceEEEe------c-CCCCceEEEEeCCEEEEEEC--CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 98764332221 1 12334566666555554433 56799999999888777765332 3467888888764
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.71 E-value=0.0023 Score=68.09 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=119.8
Q ss_pred EEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEe-cCCeEEEE
Q 002389 683 LVWDVKEHRK--AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFAST-QGHRMKVI 759 (929)
Q Consensus 683 ~i~~l~gH~~--~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs-~Dg~V~IW 759 (929)
.+.++ .|.. ....+.|+ ++...++.+.+|.|+++|+.+++..... .+...--..+..+++.++.++ .++.+.+|
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 34555 3433 34788887 3556778888999999999999876555 332222234666777777665 56799999
Q ss_pred eCCC--ceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 760 DSSR--TLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 760 Dl~~--~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
|... ...++.....-..++...+.++.+..++.|.++|..+.+....... ..-...-..++.+.+..+.+|...+
T Consensus 122 D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeLe~~dG~lyanvw-- 198 (268)
T 3nok_A 122 SGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-KLRGQPVELINELECANGVIYANIW-- 198 (268)
T ss_dssp ETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTEEEEEET--
T ss_pred ECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe-CCCCcccccccccEEeCCEEEEEEC--
Confidence 9873 3344443333345555666788777789999999988654322110 0000011234556666565554443
Q ss_pred CCCeEEEEECCCCCeEEEecCC-------------CCCeEEEEEecCCCEE-EEE
Q 002389 838 EGSNIKEWRRHRKPQISIAPEK-------------GTTIQAMAVVEDFIYL-NYN 878 (929)
Q Consensus 838 dDgtI~IWDl~~~~~i~~l~~h-------------~~~V~slafSpdg~~L-aSg 878 (929)
.++.|.+.|..+++++..+.-. ....+.|+|+|+++.| +||
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 4679999999999987765421 2356899999976544 554
No 270
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.70 E-value=0.0087 Score=68.35 Aligned_cols=213 Identities=10% Similarity=0.021 Sum_probs=124.8
Q ss_pred CCCCEE-EEEeCCCeEEEEEccCC--eEEEEEEe---------ccCCCe-EEeccCCCEEEEEecC------CeEEEEeC
Q 002389 701 EPGESL-LSGSADKTIGVWQMVQR--KLELIEVI---------ATKEPI-RKLDTYGKTIFASTQG------HRMKVIDS 761 (929)
Q Consensus 701 pdg~~L-aSgs~DgtIrIWDl~tg--~~~~~~~~---------~h~~~V-~s~s~~g~~L~sgs~D------g~V~IWDl 761 (929)
+++++| ++|..+++|.|+|+.+. +......+ +...+- ....++| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778884 56777899999999754 22222222 111111 1345777 66665555 68999997
Q ss_pred C-C-ceeeeccC-C---CeEEEEEe-CCE-EEEEE-------------------CCCcEEEEEccCCccceecccccccc
Q 002389 762 S-R-TLKDIYRS-K---GIKSMSVV-QGK-IYIGC-------------------MDSSIQELAVSNNVEREIKAPFKSWR 814 (929)
Q Consensus 762 ~-~-~~~~l~~~-~---~V~sla~s-dg~-llsgs-------------------~Dg~I~iwDl~tg~~~~i~~~~~~~~ 814 (929)
. . ....+... . .-..+.|+ +++ +++.. .+..|.+||+.+++..... .. .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI---~v-g 247 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL---TL-G 247 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE---ES-C
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE---ec-C
Confidence 7 2 23333322 1 12345566 555 44442 3789999999876432211 00 0
Q ss_pred cCCCCeEEEEE--cCCceEEEEEec-----CCCeEEEEECCCCCeE--EE--ecCC----------------CCCeEEEE
Q 002389 815 LQSKPINSLVV--YKDWLYSASSSV-----EGSNIKEWRRHRKPQI--SI--APEK----------------GTTIQAMA 867 (929)
Q Consensus 815 ~~~~~I~sl~~--~~d~i~~~s~S~-----dDgtI~IWDl~~~~~i--~~--l~~h----------------~~~V~sla 867 (929)
..+.....+.+ +|++.+....+. .+++|.+|..+.+... +. .... ......|.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 01123334444 888877665554 5568877665544311 11 0100 23577899
Q ss_pred EecCCCEEEEEe-CCCcEEEEECC---CCcEEEEEeCCC----------------C-eEEEEEcCCEEEEEE
Q 002389 868 VVEDFIYLNYNS-SASSLQIWLRG---TQQKVGRISAGS----------------K-ITSLLTANDIVLCGT 918 (929)
Q Consensus 868 fSpdg~~LaSgS-~DG~I~IWdl~---sg~~i~tl~~h~----------------~-Vtsvs~dg~~LaSgs 918 (929)
+||||++|..+. ..+.|.+||+. +.+.+..+..++ + -..+++||++|+++.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999997766 46899999975 345677776541 2 234566799988887
No 271
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.69 E-value=0.00031 Score=82.17 Aligned_cols=276 Identities=16% Similarity=0.121 Sum_probs=189.6
Q ss_pred cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhh-c---ch-hh-HHHHHhcC-
Q 002389 151 MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKR-N---VP-EA-AILIYLIK- 223 (929)
Q Consensus 151 ~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~-~---~~-~~-~vl~~l~~- 223 (929)
+.+...|..|++.|.. .+++|.+.++..|..+...++..+..+.+.| -+.++..+|+. . +. .| .+|-+|..
T Consensus 156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g-~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANG-ALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCC-cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3444567778887655 6889999999999999887777777777653 47777777743 2 32 22 34444443
Q ss_pred -CCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhcc
Q 002389 224 -PSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQ 302 (929)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 302 (929)
|.+........+|.|++.+..++.. -...|+..|..|..+.+ .....+...++++.|+..+..+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~----------v~~~a~~aL~~l~~~~~-----~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEE----------VLTDACWALSYLSDGTN-----DKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHH----------HHHHHHHHHHHHTSSCH-----HHHHHHHHTTCHHHHHHHTTCS
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHHHHcCCH-----HHHHHHHHcCHHHHHHHHHcCC
Confidence 4444455568999999999764422 13667777777765422 2334555678999999999998
Q ss_pred ChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcC-CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchh
Q 002389 303 NLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSG-EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNIN 381 (929)
Q Consensus 303 ~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~-~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~ 381 (929)
+.+-+..|+..|-.+...+...+..+.+.--..+++++|.+. ....+..|+..|..|..-+.. ..+.+.+.|.
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~----~~~~~~~~~~-- 372 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD----QIQAVINAGI-- 372 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTC--
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH----HHHHHHHCCC--
Confidence 888899999999888776666666666655567888999988 888999999999998863322 2223333444
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCC-cchHHHHHHHHHHHhccCChhhhHHHHHHHHhc
Q 002389 382 ILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKS-VFTEEAMQVILKAVASEESSTMQLLSSFILSNI 451 (929)
Q Consensus 382 ~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s-~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l 451 (929)
+..|+..|+...++-+--++..|-.+=.-++|.... +....+++.|+..|... ++.++..++.+|.+|
T Consensus 373 -i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 373 -IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP-DIRIVTVCLEGLENI 441 (528)
T ss_dssp -HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 566777777777777777776666553322332211 22345788888888774 678888888888887
No 272
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.66 E-value=0.00018 Score=73.11 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=141.5
Q ss_pred HHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHHH-hcCCC---chhhhh
Q 002389 160 LLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIY-LIKPS---PTEIKT 231 (929)
Q Consensus 160 ~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~~-l~~~~---~~~~~~ 231 (929)
.+--|..|.+++|.+.++..|..+...++..++.+.+.| -+..+..+|+.+ +. .|+..+. +.... ...+.+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344455788999999999999999988888888887774 377788888874 33 4443444 43222 245666
Q ss_pred ccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHH
Q 002389 232 LELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLA 311 (929)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 311 (929)
...+|.|++.+..++.. - +..|...|..|..+. ..+...+...++++.|++.++.++.+-+..++
T Consensus 95 ~g~i~~L~~lL~~~~~~-v---------~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQ-I---------LQEALWALSNIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (210)
T ss_dssp TTCHHHHHHHTTCSCHH-H---------HHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCHHHHHHHHcCCcHH-H---------HHHHHHHHHHHHcCC-----HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999875422 1 467788888886532 24455667789999999999999999999999
Q ss_pred HHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHh
Q 002389 312 TILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEIL 360 (929)
Q Consensus 312 ~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~ 360 (929)
..|..+...+...|..+.+.--..++++++.+.+...+..|...|..|-
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999888877777888888777889999999999999999988887663
No 273
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.62 E-value=0.00082 Score=78.66 Aligned_cols=326 Identities=14% Similarity=0.108 Sum_probs=209.4
Q ss_pred ccCCCCchhHHHH--HHHHHhhhhhccccc-ccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhh
Q 002389 96 LNGEKDAKSELLE--IIEKAISSLFFSGDL-RKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETV 172 (929)
Q Consensus 96 ~~~~~~~~~~~~~--~l~~~i~~~~~s~~l-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v 172 (929)
+..+..|-.+++. -+-+-|.-|..+++- -+.| |+..++.+. .+++.-...+.+.-.|..|++.| .|.+++|
T Consensus 86 s~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~--Aa~aL~nia---s~~~e~~~~vv~~GaIp~Lv~lL-~s~~~~v 159 (510)
T 3ul1_B 86 SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFE--SAWALTNIA---SGTSEQTKAVVDGGAIPAFISLL-ASPHAHI 159 (510)
T ss_dssp TCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHH--HHHHHHHHH---TSCHHHHHHHHHTTHHHHHHHHT-TCSCHHH
T ss_pred cCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHH--HHHHHHHHh---cCCHHHHHHHHHCCCHHHHHHHH-cCCCHHH
Confidence 3344445555553 355666666555532 1244 444455443 33333333455555677788776 4778999
Q ss_pred hhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc-ch--------hhH-HHHHhc---CCCchhhhhccchhHHH
Q 002389 173 IRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-VP--------EAA-ILIYLI---KPSPTEIKTLELLPTLV 239 (929)
Q Consensus 173 ~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~-~~--------~~~-vl~~l~---~~~~~~~~~~~~~~~~~ 239 (929)
.+.++..|..+...++..++.+.+.| -+.++..+|+.. .. .++ .|-.+. .|.+.-...-..+|.|+
T Consensus 160 ~e~A~~aL~nLa~d~~~~r~~v~~~G-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 238 (510)
T 3ul1_B 160 SEQAVWALGNIAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238 (510)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTT-CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcC-ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence 99999999999887777777777665 477888888652 11 111 122222 23333233346889999
Q ss_pred HHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhh
Q 002389 240 EVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQ 319 (929)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~ 319 (929)
+.+..++.. - +..|...|-.|..+. ..+...+...|++..|+..+..++.+-+..++..|-....
T Consensus 239 ~LL~~~~~~-v---------~~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 239 RLLHHNDPE-V---------LADSCWAISYLTDGP-----NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHTTCSCHH-H---------HHHHHHHHHHHTSSC-----HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCHH-H---------HHHHHHHHHHHhhch-----hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence 999765432 1 355666666664432 2344455678899999999999999999999998888877
Q ss_pred ccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhH
Q 002389 320 FDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQL 399 (929)
Q Consensus 320 ~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~ 399 (929)
.+...+..|.+.--..++++||.+.....+..|...|..|..-+.... +.+.+.|. +..|+..|+...++-|-
T Consensus 304 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~----~~v~~~g~---i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 304 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI----QQVVNHGL---VPFLVGVLSKADFKTQK 376 (510)
T ss_dssp SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTH---HHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHH----HHHHhcCC---HHHHHHHHcCCCHHHHH
Confidence 777778888888788999999999999999999999999876554322 22334443 45666777777777666
Q ss_pred HHHHHHhhhccccCCCC-CCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhc
Q 002389 400 LAANLLLQLDTLENTTG-KSVFTEEAMQVILKAVASEESSTMQLLSSFILSNI 451 (929)
Q Consensus 400 ~~a~lllqld~l~~~~~-~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l 451 (929)
-+|..|-.|=.-+++.+ .-+....+++.|++-|++. +++++..+.++|.++
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 66655544321112211 1122445788888888765 567788888888765
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.61 E-value=0.013 Score=70.58 Aligned_cols=260 Identities=11% Similarity=0.017 Sum_probs=137.7
Q ss_pred CC-EEEEEECCC-----------eEEEEECCCCCeeEEEEecc-CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEccCCe
Q 002389 659 KG-LLCSGFSDG-----------SIKMWDIKKQSAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSA-DKTIGVWQMVQRK 724 (929)
Q Consensus 659 ~~-~LaSGs~DG-----------tIrIWD~~~~~~~~i~~l~g-H~~~Vtslafspdg~~LaSgs~-DgtIrIWDl~tg~ 724 (929)
++ .++.|+.++ .+.+||..+++...+..+.. +.....++++.++|+.++.||. ++.+.+||..+++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 44 666776543 68899999887654444422 3333445678899999998884 5689999998886
Q ss_pred EEEEEEec-cCCCeE-EeccCCCEEEEEe-cC-----CeEEEEeCCCceeeecc--------CCCeEEEEEeCCE-EEEE
Q 002389 725 LELIEVIA-TKEPIR-KLDTYGKTIFAST-QG-----HRMKVIDSSRTLKDIYR--------SKGIKSMSVVQGK-IYIG 787 (929)
Q Consensus 725 ~~~~~~~~-h~~~V~-s~s~~g~~L~sgs-~D-----g~V~IWDl~~~~~~l~~--------~~~V~sla~sdg~-llsg 787 (929)
........ ...... .+.++++.++.|+ .+ ..+.+||.....-.... ...-.++...+++ ++.|
T Consensus 277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G 356 (656)
T 1k3i_A 277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 356 (656)
T ss_dssp EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE
T ss_pred eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEE
Confidence 54332111 111112 2335788888887 34 47899998743222110 0000001111333 2334
Q ss_pred EC---------CCcEEEEEccCCccceeccccccc----ccCCCCeEEEEE--cCCceEEEEEecC-C-----C---eEE
Q 002389 788 CM---------DSSIQELAVSNNVEREIKAPFKSW----RLQSKPINSLVV--YKDWLYSASSSVE-G-----S---NIK 843 (929)
Q Consensus 788 s~---------Dg~I~iwDl~tg~~~~i~~~~~~~----~~~~~~I~sl~~--~~d~i~~~s~S~d-D-----g---tI~ 843 (929)
+. ...+..||..++....... .+.. ......-.++.+ ..+.++.+.+... + . .+.
T Consensus 357 g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~-~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAG-KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp CGGGCEEECCSSSEEEEEECSTTCEEEEEE-ECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred CCCCcEEEecCccceeeeecCCcceeecCC-ccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 33 3456788877654221100 0000 000111122222 2344444433210 0 1 678
Q ss_pred EEECCCCCeEEEe--cCCCCC-eEEEEEecCCCEEEEEeCC-----------CcEEEEECCCCcEEE--EEeCC---CCe
Q 002389 844 EWRRHRKPQISIA--PEKGTT-IQAMAVVEDFIYLNYNSSA-----------SSLQIWLRGTQQKVG--RISAG---SKI 904 (929)
Q Consensus 844 IWDl~~~~~i~~l--~~h~~~-V~slafSpdg~~LaSgS~D-----------G~I~IWdl~sg~~i~--tl~~h---~~V 904 (929)
+||..+....... ..+... -.+.+..|+|+.++.|+.+ ..+.+||..+.+... ..... +..
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~ 515 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSI 515 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEE
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccH
Confidence 8888777654433 222222 2345667899999999854 568999987765432 11111 112
Q ss_pred EEEEEcCCEEEEEEC
Q 002389 905 TSLLTANDIVLCGTE 919 (929)
Q Consensus 905 tsvs~dg~~LaSgs~ 919 (929)
..+.++|++++.||.
T Consensus 516 a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 516 SLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEEECC
T ss_pred hhcCCCcEEEecCCC
Confidence 223358999999885
No 275
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.60 E-value=0.0011 Score=79.64 Aligned_cols=269 Identities=12% Similarity=0.092 Sum_probs=180.3
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc----ch-hhH-HHHHhcCC--Cch
Q 002389 156 ILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN----VP-EAA-ILIYLIKP--SPT 227 (929)
Q Consensus 156 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~----~~-~~~-vl~~l~~~--~~~ 227 (929)
.|.-|++.|. +.++.|.+.++..|..+...++ .+..+.....-+..++..|+++ +. .|+ .|..|... ...
T Consensus 15 ~i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 15 AIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp THHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHc-CCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 4566666554 7889999999999999877664 5555554444577788888753 32 333 34333332 133
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHH
Q 002389 228 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 307 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 307 (929)
.+.+...+|.|++.+..++.. =+..|+..|..|....+ .+...+...|+++.|++.++.++.+.+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~----------v~~~A~~aL~nL~~~~~-----~~~~~v~~~g~i~~Lv~lL~~~~~~~~ 157 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDS----------VLFYAITTLHNLLLHQE-----GAKMAVRLAGGLQKMVALLNKTNVKFL 157 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHH----------HHHHHHHHHHHHHHHST-----THHHHHHHTTHHHHHHHGGGCCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCHH----------HHHHHHHHHHHHHhCcc-----hhHHHHHHCCChHHHHHHHCcCCHHHH
Confidence 455668899999999875422 14667777777765432 233445568999999999999888777
Q ss_pred HHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCC-chhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHH
Q 002389 308 ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGE-KRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHIL 386 (929)
Q Consensus 308 ~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~-~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~ 386 (929)
..++..|-.-...+..+|..|.+.--..+++++|.+.. ...+..|...|..|-. ..... ..+.+.| .+..|
T Consensus 158 ~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~----~~l~~~g---~l~~L 229 (644)
T 2z6h_A 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNK----PAIVEAG---GMQAL 229 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHH----HHHHHTT---HHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccH----HHHHHCC---CHHHH
Confidence 77766665444356677888877777888999998874 3445667777766653 22111 2233445 45667
Q ss_pred HHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 387 KLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 387 l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
+..|+...++-+.-++..|-.|= ..+.+ ....++++..|++.|+. +++.++..|+.+|.+|..
T Consensus 230 ~~ll~~~~~~~~~~a~~~L~nL~--~~~~~-~~~~~~~i~~Lv~lL~~-~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 230 GLHLTDPSQRLVQNCLWTLRNLS--DAATK-QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HTTTTCSCHHHHHHHHHHHHHHG--GGCTT-CCSCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHh--hcchh-hhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 77777777777777777776662 22222 24457999999999985 478899999999999865
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.58 E-value=0.028 Score=66.82 Aligned_cols=265 Identities=17% Similarity=0.120 Sum_probs=152.4
Q ss_pred eCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCc--------E-EEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 002389 658 YKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKA--------V-TSFSLFEPGESLLSGSADKTIGVWQMVQRKLELI 728 (929)
Q Consensus 658 s~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~--------V-tslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~ 728 (929)
.++.++.++.++.|.-+|..+++. +.++...... + ..+++ .+..++.++.|+.+.-+|..+|+....
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKR--LWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCE--EEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcE--EEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 477888888755699999998865 4444322211 0 11222 356788888999999999999987655
Q ss_pred EEecc--------CCCeEEe-ccCCC-EEEEEec------CCeEEEEeCCC-ceee-eccC-------------------
Q 002389 729 EVIAT--------KEPIRKL-DTYGK-TIFASTQ------GHRMKVIDSSR-TLKD-IYRS------------------- 771 (929)
Q Consensus 729 ~~~~h--------~~~V~s~-s~~g~-~L~sgs~------Dg~V~IWDl~~-~~~~-l~~~------------------- 771 (929)
..... ..++..= ..+++ .+++++. ++.|..+|... ...- ....
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 44321 1121110 01223 5666553 68898888762 2111 1000
Q ss_pred ----------------------CCe-EEEEEe--CCEEEEEEC--------------------C----CcEEEEEccCCc
Q 002389 772 ----------------------KGI-KSMSVV--QGKIYIGCM--------------------D----SSIQELAVSNNV 802 (929)
Q Consensus 772 ----------------------~~V-~sla~s--dg~llsgs~--------------------D----g~I~iwDl~tg~ 802 (929)
..+ ..+++. .+.++.+.. | +.|.-+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 000 123343 466776653 2 579999999887
Q ss_pred cceecc--cccccccC--CCCeEEEEEc-CCc---eEEEEEecCCCeEEEEECCCCCeEEEecCCC-------------C
Q 002389 803 EREIKA--PFKSWRLQ--SKPINSLVVY-KDW---LYSASSSVEGSNIKEWRRHRKPQISIAPEKG-------------T 861 (929)
Q Consensus 803 ~~~i~~--~~~~~~~~--~~~I~sl~~~-~d~---i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~-------------~ 861 (929)
..-... +...|... ..++. .... .++ ...+.. ..+|.++++|..+++.+....... .
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~-~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHA-DRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEE-CTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEE-CCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 643221 11122111 22332 1221 233 233333 377899999999988765443221 0
Q ss_pred C--------------------------------eEEEEEecCCCEEEEEe------------------------------
Q 002389 862 T--------------------------------IQAMAVVEDFIYLNYNS------------------------------ 879 (929)
Q Consensus 862 ~--------------------------------V~slafSpdg~~LaSgS------------------------------ 879 (929)
+ -..++++|+...+....
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 0 01346666554444322
Q ss_pred ---CCCcEEEEECCCCcEEEEEeCCCCeEE--EEEcCCEEEEEECCCcEEEeec
Q 002389 880 ---SASSLQIWLRGTQQKVGRISAGSKITS--LLTANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 880 ---~DG~I~IWdl~sg~~i~tl~~h~~Vts--vs~dg~~LaSgs~DG~I~IWdi 928 (929)
.+|.|.-||..+|+.+.+...+.++.+ +...+..++.|+.||.++.||.
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred CCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 368899999999999888776544332 4556888888999999999984
No 277
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.52 E-value=0.0005 Score=71.72 Aligned_cols=197 Identities=16% Similarity=0.134 Sum_probs=144.1
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLAT 312 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 312 (929)
.-.|.++.-|.+++.. . +..|...|..+++. +..+...++..|+++.|++.++.++.+-+..++.
T Consensus 12 ~~~~~~~~~L~s~~~~-~---------~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~ 76 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQ-E---------QLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76 (252)
T ss_dssp CSHHHHHHHHHSSCSS-H---------HHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHH-H---------HHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 3456677778776533 1 35677777676665 2345566777899999999999999888999999
Q ss_pred HHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhc
Q 002389 313 ILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQ 392 (929)
Q Consensus 313 ~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~ 392 (929)
.|......+...|..+.+.--..+++++|.+.+...+..|+..|..|..-+.... ..+.+.|. +..|+-.|+.
T Consensus 77 ~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~~---i~~L~~lL~~ 149 (252)
T 4db8_A 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI----QAVIDAGA---LPALVQLLSS 149 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTH---HHHHHHGGGC
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH----HHHHHCCC---HHHHHHHHhC
Confidence 9988888777888888888778999999999999999999999999865443221 22333443 5667777888
Q ss_pred ccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 393 LQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 393 ~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
..++-+--++..|-.|=.-.+..+.-+....++..|++.|... ++.+|..|+.+|.+|.
T Consensus 150 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 150 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 208 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHh
Confidence 7777777777777655321111222334456789999999866 8889999999999997
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.49 E-value=0.1 Score=55.92 Aligned_cols=222 Identities=9% Similarity=0.048 Sum_probs=124.9
Q ss_pred CCEEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CC-eEEEEEccCCeE
Q 002389 650 GAVTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-DK-TIGVWQMVQRKL 725 (929)
Q Consensus 650 ~~Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-Dg-tIrIWDl~tg~~ 725 (929)
.....++|+ ++ ++++-..++.|..||..+.. . ..+ .....+.++++.++|+.+++... ++ .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~--~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q--IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E--EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E--EEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 457789997 44 55555578999999987642 2 222 22356889999999996555433 22 466677777775
Q ss_pred EEEEEeccCCCeEEec-cCCCEEEEEe-cCCeEEEEeCCCc-eeee---------c---cCCCeEEEEEeCCEEEEE-EC
Q 002389 726 ELIEVIATKEPIRKLD-TYGKTIFAST-QGHRMKVIDSSRT-LKDI---------Y---RSKGIKSMSVVQGKIYIG-CM 789 (929)
Q Consensus 726 ~~~~~~~h~~~V~s~s-~~g~~L~sgs-~Dg~V~IWDl~~~-~~~l---------~---~~~~V~sla~sdg~llsg-s~ 789 (929)
................ ..+..+++.. .++.|+.+|.... .... . .-.....+...++.++.+ ..
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~ 187 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE 187 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC
Confidence 4332221111111111 2344444444 5788888887632 1110 0 112345553334566554 45
Q ss_pred CCcEEEEEccC-CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEE--EecCCCCCeEEE
Q 002389 790 DSSIQELAVSN-NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQIS--IAPEKGTTIQAM 866 (929)
Q Consensus 790 Dg~I~iwDl~t-g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~--~l~~h~~~V~sl 866 (929)
.+.|..|++.. +..... ..+. .......+.+.+++.+.++.. ..+.|.++|.. +.... .........+++
T Consensus 188 ~~~I~~~~~~~~g~~~~~----~~~~-~~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEP----EIFV-EQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTEEEEEEBCTTSCBCCC----EEEE-ESCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCEEEEEEeCCCCCCCcc----EEEe-ccCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 67899999875 321111 1111 012345567777765544433 45789999976 54422 233334568999
Q ss_pred EEe---cCCCEEEEEeCCC
Q 002389 867 AVV---EDFIYLNYNSSAS 882 (929)
Q Consensus 867 afS---pdg~~LaSgS~DG 882 (929)
+|. ||++.|..++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8887776655443
No 279
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.48 E-value=0.024 Score=60.22 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCCCCEEEEEEeCC-EEEEEECCC--eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEEccC
Q 002389 647 KCSGAVTALIYYKG-LLCSGFSDG--SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~~~Vtsl~fs~~-~LaSGs~DG--tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSg-s~DgtIrIWDl~t 722 (929)
+-..-...+.|+++ ++.+++.+| .|+++|+.+++. +..+.-. .........++++.|+.. -.++.+.+||..+
T Consensus 40 d~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv--~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 40 DTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKT--LQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp CTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCE--EEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcE--EEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 33445688999966 455666666 999999999975 3443322 222222222345665544 4588999999999
Q ss_pred CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc---C---CCeEEEEEeCCEEEEEE-CCCcE
Q 002389 723 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR---S---KGIKSMSVVQGKIYIGC-MDSSI 793 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~---~---~~V~sla~sdg~llsgs-~Dg~I 793 (929)
.+.......+. .-..++++++.++....++.|.++|... ....+.. . ..++.+.+.+|++++.. .++.|
T Consensus 117 ~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I 194 (262)
T 3nol_A 117 LRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI 194 (262)
T ss_dssp CCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred CcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence 88665544432 2235667888888877788999999873 2222222 1 33556778899988877 47889
Q ss_pred EEEEccCCccce
Q 002389 794 QELAVSNNVERE 805 (929)
Q Consensus 794 ~iwDl~tg~~~~ 805 (929)
.+.|..+|+...
T Consensus 195 ~vIDp~tG~V~~ 206 (262)
T 3nol_A 195 VRIDPETGKVTG 206 (262)
T ss_dssp EEECTTTCBEEE
T ss_pred EEEECCCCcEEE
Confidence 999999987644
No 280
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.47 E-value=0.062 Score=56.40 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=103.3
Q ss_pred CCCCCEEEEEEeCCE-EEEEECC--CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccC
Q 002389 647 KCSGAVTALIYYKGL-LCSGFSD--GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQ 722 (929)
Q Consensus 647 gH~~~Vtsl~fs~~~-LaSGs~D--GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~t 722 (929)
....-.-.+.|+++. +.+.+.+ ..|+++|+.+++......+..+.-+ ..+++ +++.|+ ..-.++.+.+||..+
T Consensus 18 d~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~--~~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 18 DTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVA--WRDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEE--ETTEEEEEESSSSEEEEEETTT
T ss_pred CCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEE--eCCEEEEEEeeCCEEEEEECCc
Confidence 345567789999775 4455554 4999999999975333333332211 23333 345544 445689999999999
Q ss_pred CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc------CCCeEEEEEeCCEEEEEE-CCCcE
Q 002389 723 RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR------SKGIKSMSVVQGKIYIGC-MDSSI 793 (929)
Q Consensus 723 g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~------~~~V~sla~sdg~llsgs-~Dg~I 793 (929)
.+.......+. .-..+.+++..++....++.|.++|... ....+.. ...++.+.+.+|++++.. .+..|
T Consensus 95 l~~~~ti~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I 172 (243)
T 3mbr_X 95 LTPRARFRYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRI 172 (243)
T ss_dssp TEEEEEEECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEE
T ss_pred CcEEEEEeCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeE
Confidence 88665544432 2245667888888888889999999873 2233322 134667788899988877 47789
Q ss_pred EEEEccCCccce
Q 002389 794 QELAVSNNVERE 805 (929)
Q Consensus 794 ~iwDl~tg~~~~ 805 (929)
.+.|..+|+...
T Consensus 173 ~vIDp~tG~V~~ 184 (243)
T 3mbr_X 173 ARIDPASGKVVA 184 (243)
T ss_dssp EEECTTTCBEEE
T ss_pred EEEECCCCCEEE
Confidence 999999987644
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.45 E-value=0.16 Score=55.92 Aligned_cols=238 Identities=10% Similarity=0.009 Sum_probs=141.8
Q ss_pred EEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEE
Q 002389 652 VTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIE 729 (929)
Q Consensus 652 Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~~~~ 729 (929)
.+|.+.. +.+|+.+ ....|+..++.+.... ..+.+ ...+..++|++.+..|+ +-...+.|..++...+......
T Consensus 36 ~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~--~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-NRIDIRQVLPHRSEYT--LLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEE-CBSCEEEECTTSCCEE--EEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEee-cccceEEEeCCCCeeE--EeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3455544 3344433 3345888888776432 22333 34578999998777655 4456788999998766533322
Q ss_pred EeccCCC-eEEeccCCCEEEEEe-cCCeEEEEeCCCceeee-c--cCCCeEEEEEe--CCEEEEEEC-C-CcEEEEEccC
Q 002389 730 VIATKEP-IRKLDTYGKTIFAST-QGHRMKVIDSSRTLKDI-Y--RSKGIKSMSVV--QGKIYIGCM-D-SSIQELAVSN 800 (929)
Q Consensus 730 ~~~h~~~-V~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~~~l-~--~~~~V~sla~s--dg~llsgs~-D-g~I~iwDl~t 800 (929)
..+...+ -.++.+.+..++.+. ..+.|.+.+.++..... . .......+++. +|.++.... . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 2222222 235666566665554 56789999988543322 2 12457788887 667665443 3 6788888765
Q ss_pred CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 002389 801 NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 801 g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~ 880 (929)
.....+. .........+++.++...+.-.....+.|..+|.+.................+++. ++..+++-..
T Consensus 192 ~~~~~~~------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~ 264 (349)
T 3v64_C 192 SGRRIIA------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWH 264 (349)
T ss_dssp CSCEESC------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred CCcEEEE------ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence 3322221 11234567888885433222223356789999987665444444444567788883 5556666667
Q ss_pred CCcEEEEECCCCcEEEEEeC
Q 002389 881 ASSLQIWLRGTQQKVGRISA 900 (929)
Q Consensus 881 DG~I~IWdl~sg~~i~tl~~ 900 (929)
.+.|..++..+|+.+..+..
T Consensus 265 ~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 265 TKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TTEEEEEETTTCCSCEEEEC
T ss_pred CCeEEEEEccCCCccEEecc
Confidence 78899999777777666653
No 282
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.43 E-value=0.012 Score=62.51 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=105.1
Q ss_pred CCCCCCEEEEEEeCC-EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCC
Q 002389 646 HKCSGAVTALIYYKG-LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQR 723 (929)
Q Consensus 646 ~gH~~~Vtsl~fs~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg 723 (929)
++-..-...+.|+++ ++.+.+.+|.|+++|+.+++..... +..+. .-..+++ +++.|+ ..-.++.+.+||..+.
T Consensus 51 hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 51 HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLAS--DGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEE--CSSCEEEEESSSCEEEEEETTTT
T ss_pred CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEE--eCCEEEEEEccCCEEEEEECCcC
Confidence 344555688999966 5667788899999999998764333 43221 1233555 444444 4456899999999998
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ceeeecc------CCCeEEEEEeCCEEEEEE-CCCcEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLKDIYR------SKGIKSMSVVQGKIYIGC-MDSSIQ 794 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~~l~~------~~~V~sla~sdg~llsgs-~Dg~I~ 794 (929)
+......... .-..++++++.++....++.|.++|... ....+.- ...++.+.+.+|++++.. .++.|.
T Consensus 127 ~~~~ti~~~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 127 QRERTTRYSG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL 204 (268)
T ss_dssp EEEEEEECSS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred cEEEEEeCCC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence 8665544432 2245667888888888889999999873 2222222 124567788899988877 477899
Q ss_pred EEEccCCccce
Q 002389 795 ELAVSNNVERE 805 (929)
Q Consensus 795 iwDl~tg~~~~ 805 (929)
+.|..+|+...
T Consensus 205 vIDp~TG~V~~ 215 (268)
T 3nok_A 205 EIDPATGTVVG 215 (268)
T ss_dssp EECTTTCBEEE
T ss_pred EEeCCCCcEEE
Confidence 99999987543
No 283
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.42 E-value=0.00065 Score=75.85 Aligned_cols=204 Identities=16% Similarity=0.065 Sum_probs=136.4
Q ss_pred CCCceeccchHHHHHHHHHHHhc----------CcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc--
Q 002389 144 KTGVKYDMLQDVILEQLLTAISA----------SKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-- 211 (929)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~e~~~~----------s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~-- 211 (929)
++..+-.+..--.+.-|++.|.. +.++++++.++..|.-+...++.....+...+.=+.+|+.+|+++
T Consensus 62 d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 141 (354)
T 3nmw_A 62 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141 (354)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH
Confidence 34333344444566777777742 245789999999999998777766666644444488999999874
Q ss_pred -chh--hHHHHHhcCC----CchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhh
Q 002389 212 -VPE--AAILIYLIKP----SPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLA 284 (929)
Q Consensus 212 -~~~--~~vl~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~ 284 (929)
+.+ +..|-+|-.. .+..+.+..-+|.|+++|..++.. + -++.|...|-.|-...| .+..
T Consensus 142 ~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-~--------~~~~A~~aL~nLs~~~~-----~nk~ 207 (354)
T 3nmw_A 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-S--------TLKSVLSALWNLSAHCT-----ENKA 207 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-H--------HHHHHHHHHHHHHTTCH-----HHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-H--------HHHHHHHHHHHHHccCh-----hhhH
Confidence 432 3456666542 235566778899999987543321 1 03566667777755332 2234
Q ss_pred hhc-hhhhHhHHHHHhhccCh----HHHHHHHHHHHhhhh---ccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHH
Q 002389 285 AIN-SPRVLCGLLDVARHQNL----EELISLATILVKCIQ---FDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFF 356 (929)
Q Consensus 285 ~~~-~~~~~~~l~~~~~~~~~----~e~~~~~~~l~~c~~---~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~ 356 (929)
++. ..|+|..|++.+..++. +-+..++.+|-..-. .+...|..|.+.=-..+++++|.++....+..|+..|
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 455 57999999999986643 235555555543322 3455677777776789999999999999999999999
Q ss_pred HHHhc
Q 002389 357 HEILR 361 (929)
Q Consensus 357 ~el~~ 361 (929)
..|..
T Consensus 288 ~nLa~ 292 (354)
T 3nmw_A 288 WNLSA 292 (354)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 98864
No 284
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.41 E-value=0.059 Score=57.91 Aligned_cols=230 Identities=9% Similarity=0.006 Sum_probs=125.9
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecC-C-eEEE
Q 002389 683 LVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQG-H-RMKV 758 (929)
Q Consensus 683 ~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~D-g-~V~I 758 (929)
.+..+..+ .....++|+++|+.+++-..++.|..||...+. ..... ...... ++.++++.+++.... + .|..
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 44555433 467889999999877776678999999986542 22211 122233 456777754443332 2 4666
Q ss_pred EeCC-Cceeeecc---CCCeEEEEEe-CCEEEEEE-CCCcEEEEEccCCcccee-cccc-c--ccccCCCCeEEEEEcCC
Q 002389 759 IDSS-RTLKDIYR---SKGIKSMSVV-QGKIYIGC-MDSSIQELAVSNNVEREI-KAPF-K--SWRLQSKPINSLVVYKD 828 (929)
Q Consensus 759 WDl~-~~~~~l~~---~~~V~sla~s-dg~llsgs-~Dg~I~iwDl~tg~~~~i-~~~~-~--~~~~~~~~I~sl~~~~d 828 (929)
+|.. +....+.. ......++.. ++.+++.. .++.|+.+|..++..... ..+. . .........+.+ +++
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 6644 33332221 2223344433 56656555 578888888765321110 0000 0 000111233445 444
Q ss_pred ceEEEEEecCCCeEEEEECCC-CCe--EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE--EEeCC-C
Q 002389 829 WLYSASSSVEGSNIKEWRRHR-KPQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG--RISAG-S 902 (929)
Q Consensus 829 ~i~~~s~S~dDgtI~IWDl~~-~~~--i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~--tl~~h-~ 902 (929)
+.++.......+.|..|+... +.. ...+. .......++++++|+++++....+.|.+++.. |+... .+... .
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 432222233567899999764 321 11111 11345678999999988887778999999975 65532 33333 4
Q ss_pred CeEEEEEc-----CCEEEEEECC
Q 002389 903 KITSLLTA-----NDIVLCGTET 920 (929)
Q Consensus 903 ~Vtsvs~d-----g~~LaSgs~D 920 (929)
..++++|. ++.|+.++..
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CceEEEEecccCCCCEEEEECCC
Confidence 48888875 3566665543
No 285
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.41 E-value=0.0051 Score=71.28 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=174.8
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc----ch-hh-HHHHHhcCC--Cch
Q 002389 156 ILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN----VP-EA-AILIYLIKP--SPT 227 (929)
Q Consensus 156 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~----~~-~~-~vl~~l~~~--~~~ 227 (929)
.|.-|++.|. +.++.|.+.++..|..+...++ .+..+.....-+.++.++|+++ +. .| ..|..|... ...
T Consensus 18 ~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 18 AIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp HHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 4666666554 7899999999999999876554 5555555445677888888653 32 33 344444332 134
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHH
Q 002389 228 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 307 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 307 (929)
.+.+...+|.|++.+..++.. -+..|+..|..|....+ .+...+...|+++.|++.++.++.+.+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~----------v~~~a~~~L~~l~~~~~-----~~~~~i~~~g~i~~L~~ll~~~~~~~~ 160 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDS----------VLFYAITTLHNLLLHQE-----GAKMAVRLAGGLQKMVALLNKTNVKFL 160 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHH----------HHHHHHHHHHHHHHHCT-----THHHHHHHHTHHHHHHHGGGCCCHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHH----------HHHHHHHHHHHHhcCCc-----chHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 566778999999999865421 13567777777755322 223445568999999999998887777
Q ss_pred HHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhH-HHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHH
Q 002389 308 ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAI-MIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHIL 386 (929)
Q Consensus 308 ~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~-~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~ 386 (929)
..++..|-.=...+..+|..+.+.--..+++++|.......+ ..|...|..|-. +... -..+.+.| .+..|
T Consensus 161 ~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~----~~~~~~~g---~~~~L 232 (529)
T 1jdh_A 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN----KPAIVEAG---GMQAL 232 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTH----HHHHHHTT---HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-Cccc----HHHHHHCC---CHHHH
Confidence 776665542222345567777776667889999988755443 345666666553 2211 12333445 46667
Q ss_pred HHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 387 KLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 387 l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
+..|+...++-+--++..|-.|= .++.+. ...+.++..|++-|+. +++.++..|+.+|.+|+.
T Consensus 233 ~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~-~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 233 GLHLTDPSQRLVQNCLWTLRNLS--DAATKQ-EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HTTTTSSCHHHHHHHHHHHHHHH--TTCTTC-SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCChHHHHHHHHHHHHHh--cCChhh-HHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 77777766666666666665543 222222 2347899999999954 588899999999999965
No 286
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.40 E-value=0.0033 Score=77.15 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=205.5
Q ss_pred HHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceecc-chHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhc
Q 002389 108 EIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDM-LQDVILEQLLTAISASKEETVIRASVSILTTIILA 186 (929)
Q Consensus 108 ~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~ 186 (929)
+.+..+|...-.+.+..+-= .|...++.+ +-|.+.+...+ ...-+++.|+.- .+|.++.+.+.++-.|.-. ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~a~~alt~i---~~g~~~~~~~~~~~~G~v~~li~L-l~s~~~~~q~~A~~al~~a-a~ 319 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKV-RVTVAITAL---LNGPLDVGNQVVAREGILQMILAM-ATTDDELQQRVACECLIAA-SS 319 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHH-HHHHHHHHH---HSSSHHHHHHHHHTTTHHHHHHHH-HHSSCHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHhccCChHhHH-HHHHHHHHH---hcCCHHHHHHHHhccchHHHHHHH-hCCCCHHHHHHHHHHHHHH-cC
Confidence 44455555544443333221 223333333 34555555553 366777777765 4677888999999998885 55
Q ss_pred chhhhhhhhhcCCCchHHHHHHhhc---ch--hhHHHHHhc-----CCCchhhhh---ccchhHHHHHHhccccccCccc
Q 002389 187 NESVIEDIKKKGLRLSDLATALKRN---VP--EAAILIYLI-----KPSPTEIKT---LELLPTLVEVICTSKLYKGKLE 253 (929)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~lk~~---~~--~~~vl~~l~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 253 (929)
++..|..+.+.|- .++..+|+++ +. -+..|-.+= +|+...+.+ .+++|.+++.|.+++..++-
T Consensus 320 ~~~~R~~I~~~gv--~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v-- 395 (810)
T 3now_A 320 KKDKAKALCEQGV--DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDI-- 395 (810)
T ss_dssp SHHHHHTTHHHHH--HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSH--
T ss_pred CcHHHHHHHHcCc--HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHH--
Confidence 5889999988774 8888899874 33 445555553 343333322 46788899988875211111
Q ss_pred ccccCchhhHHHHHHHHHhccccccchhhhhhhc-hhhhHhHHHHHhhccChHHHHHHHHHHHhhhhc-cCc--------
Q 002389 254 SVRLTPPAASLMIIEVLVTAFDYATNNMHLAAIN-SPRVLCGLLDVARHQNLEELISLATILVKCIQF-DGQ-------- 323 (929)
Q Consensus 254 ~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~-d~~-------- 323 (929)
+..|+.-|--|-.+. ..-..++ ..|+|+.|++.+..++..-...|+.+|..+... |..
T Consensus 396 ------~~~AveaLayLS~~~------~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~ 463 (810)
T 3now_A 396 ------RRWAADGLAYLTLDA------ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463 (810)
T ss_dssp ------HHHHHHHHHHHTTSH------HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGG
T ss_pred ------HHHHHHHHHHHhCCc------HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHH
Confidence 466777666663332 2223344 478999999999988888889999999988873 211
Q ss_pred -------------c-------h---hHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCch
Q 002389 324 -------------C-------R---KYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNI 380 (929)
Q Consensus 324 -------------c-------r---~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~ 380 (929)
| + ..|.+.=-..+|++||.++....+..|+..|.-|-. +.. .-..+-+.|+
T Consensus 464 la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~----~r~~Vv~~Ga- 537 (810)
T 3now_A 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKE----LRGKVVQEGG- 537 (810)
T ss_dssp GTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHH----HHHHHHHTTH-
T ss_pred HHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHH----HHHHHHHCCC-
Confidence 1 1 344444457889999999999999999999999863 321 2233455665
Q ss_pred hHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCC-CCcch-HHHHHHHHHHHhccCChhhhHHHHHHHHhcCcc
Q 002389 381 NILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTG-KSVFT-EEAMQVILKAVASEESSTMQLLSSFILSNIGGT 454 (929)
Q Consensus 381 ~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~-~s~yr-eea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~ 454 (929)
+..|+..|++..++-+-.+|.-|-.|=.-.+|.. ...|+ .+|+..|++-|........|..|+.||.+|.+.
T Consensus 538 --ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 538 --VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 4566777888888888888877766644455532 11122 469999999887544555567899999999864
No 287
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.39 E-value=0.15 Score=57.18 Aligned_cols=237 Identities=10% Similarity=0.000 Sum_probs=141.3
Q ss_pred EEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEe
Q 002389 654 ALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 654 sl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~~~~~~ 731 (929)
|.+.. ..+|+.+ ....|+..++.+.... ..+. ....+..++|++.+..|+ +-...+.|..++...+........
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~--~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRSEYT--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSCCCE--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccceeEee-cCccceeeccCCCcEE--EEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 44444 3344443 3457888888876532 2222 334578999998766655 545678899999876653332222
Q ss_pred ccCCC-eEEeccCCCEEEEEe-cCCeEEEEeCCCceee-ecc--CCCeEEEEEe--CCEEEEEEC-C-CcEEEEEccCCc
Q 002389 732 ATKEP-IRKLDTYGKTIFAST-QGHRMKVIDSSRTLKD-IYR--SKGIKSMSVV--QGKIYIGCM-D-SSIQELAVSNNV 802 (929)
Q Consensus 732 ~h~~~-V~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~~~-l~~--~~~V~sla~s--dg~llsgs~-D-g~I~iwDl~tg~ 802 (929)
+...+ -.++.+.+..++.+. ..+.|.+.++++.... +.. ......+++. ++.++.... . +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 22222 235666566665554 4568888888754322 221 2457788886 667665543 3 678888876533
Q ss_pred cceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 002389 803 EREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 803 ~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG 882 (929)
...+. .........+++.++...+.-.....+.|..+|.+.................+++ .++..+++-...+
T Consensus 237 ~~~~~------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 237 RRIIA------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp CEEEE------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred cEEEE------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence 22221 1123446778887543322222335678999998765544444444456778888 4455666666788
Q ss_pred cEEEEECCCCcEEEEEeCC
Q 002389 883 SLQIWLRGTQQKVGRISAG 901 (929)
Q Consensus 883 ~I~IWdl~sg~~i~tl~~h 901 (929)
.|..++..+|+.+..+...
T Consensus 310 ~V~~~~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 310 SINSANKFTGKNQEIIRNK 328 (386)
T ss_dssp EEEEEETTTCCSCEEEECS
T ss_pred eEEEEECCCCcceEEEccC
Confidence 9999998788777776644
No 288
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.39 E-value=0.018 Score=62.33 Aligned_cols=233 Identities=9% Similarity=0.030 Sum_probs=130.1
Q ss_pred EEEEEEe-CC-EEEEEECCCeEEEEECCCCCeeEEEEec-----------------cCCCcEEEEEEcCCCCEEEEEeCC
Q 002389 652 VTALIYY-KG-LLCSGFSDGSIKMWDIKKQSAMLVWDVK-----------------EHRKAVTSFSLFEPGESLLSGSAD 712 (929)
Q Consensus 652 Vtsl~fs-~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l~-----------------gH~~~Vtslafspdg~~LaSgs~D 712 (929)
..+++|+ ++ +++++..++.|..||..++.......-. .....+.++++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4467776 44 5888889999999998876432111100 011357899999844456656555
Q ss_pred CeEEEEEccCCeEEEEEEecc---CCCeE--Eecc-CCCEEEEEec-----------------CCeEEEEeCC-Cceeee
Q 002389 713 KTIGVWQMVQRKLELIEVIAT---KEPIR--KLDT-YGKTIFASTQ-----------------GHRMKVIDSS-RTLKDI 768 (929)
Q Consensus 713 gtIrIWDl~tg~~~~~~~~~h---~~~V~--s~s~-~g~~L~sgs~-----------------Dg~V~IWDl~-~~~~~l 768 (929)
+.+..+|..++.......... ..... .+.+ +|+..++-.. ++.|..||.. +....+
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 668888877654322211111 01122 3456 6654444322 3678888875 332222
Q ss_pred cc-CCCeEEEEEe-CCE-EEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec-------
Q 002389 769 YR-SKGIKSMSVV-QGK-IYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV------- 837 (929)
Q Consensus 769 ~~-~~~V~sla~s-dg~-llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~------- 837 (929)
.. ......++++ +|. ++.+ ...+.|..|++........ ..+..... ...+...+++.+.++...
T Consensus 181 ~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~----~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA----EVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE----EEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc----ceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 21 2345578887 664 6655 4568899999875321111 01100112 667788877655444331
Q ss_pred --CCCeEEEEECCCCCeEEEecCC----CCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 838 --EGSNIKEWRRHRKPQISIAPEK----GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 838 --dDgtI~IWDl~~~~~i~~l~~h----~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
..+.|..+|.. ++.+..+... ...+..+++ .++..+++....+.|.++++..
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 13568888875 5555544433 235666766 4666666666778898888753
No 289
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.38 E-value=0.0046 Score=76.25 Aligned_cols=246 Identities=11% Similarity=0.096 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhcc
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLE 233 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~ 233 (929)
...|..|++.|. +.++.|.+.++..|..+...+. ....+. ..-+
T Consensus 149 ~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~-~~~~i~----------------------------------~~~~ 192 (780)
T 2z6g_A 149 TRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEA-SRHAIM----------------------------------RSPQ 192 (780)
T ss_dssp HHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHH-HHHHHT----------------------------------TCHH
T ss_pred hCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCCh-hHHHHH----------------------------------hccC
Confidence 456677777655 6788888888888887765443 222111 0115
Q ss_pred chhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHH
Q 002389 234 LLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATI 313 (929)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 313 (929)
.+|.|+++|+++... +. +..|...|..|.. . ..+...+...|++..|++.++.++.+-+..|+..
T Consensus 193 ~i~~Lv~~L~~~~d~-~v--------r~~Aa~aL~~Ls~-~-----~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~a 257 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDV-ET--------ARCTSGTLHNLSH-H-----REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITT 257 (780)
T ss_dssp HHHHHHHHHHHCCCH-HH--------HHHHHHHHHHHHT-S-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCH-HH--------HHHHHHHHHHHhC-C-----chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 688899999865311 10 3556666666422 2 2345556667999999999999998889999999
Q ss_pred HHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCc---------hhhHHHHHHhhccCch----
Q 002389 314 LVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPR---------SSAIDLLQRIHKEGNI---- 380 (929)
Q Consensus 314 l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r---------~~~~~~l~~~~~~~~~---- 380 (929)
|..+......+|..+.+.--..+++++|.+.+.+.+..|+..|.-|..-+- ..+..+++.++++..-
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 337 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 999998888999999887788999999999877777777666664433221 1122233333322110
Q ss_pred ----------------------hHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCCh
Q 002389 381 ----------------------NILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESS 438 (929)
Q Consensus 381 ----------------------~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~ 438 (929)
..+..|+..|+...++-+--++..|..|=- .+.+ -.-+++++..|++.|+. .++
T Consensus 338 ~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~--~~~~-~~~~~~~i~~Lv~lL~~-~d~ 413 (780)
T 2z6g_A 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATK-QEGMEGLLGTLVQLLGS-DDI 413 (780)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHT--TCTT-CSCCHHHHHHHHHHTTC-SCH
T ss_pred HHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhc--cchh-hhhhhhHHHHHHHHHcC-CCH
Confidence 123455555555544444444444444321 1111 12357899999998875 578
Q ss_pred hhhHHHHHHHHhcCcc
Q 002389 439 TMQLLSSFILSNIGGT 454 (929)
Q Consensus 439 ~~q~~~~~~l~~l~g~ 454 (929)
.++..|+.+|.+|..+
T Consensus 414 ~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 414 NVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8899999999999654
No 290
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.31 E-value=0.007 Score=69.71 Aligned_cols=326 Identities=14% Similarity=0.152 Sum_probs=190.1
Q ss_pred HHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchh
Q 002389 110 IEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANES 189 (929)
Q Consensus 110 l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~ 189 (929)
+...|..|.+.+.-.++ .|+..+..+ +.++++.+..+.+.-.|..|++.|. |.++++++.++..|..+...++.
T Consensus 4 l~~lv~~L~s~~~~~q~--~A~~~L~~l---~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQA--IGAYYIQHT---CFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHH--HHHHHHHHH---TSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHCCCCHHHHH--HHHHHHHHH---HcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHH
Confidence 45566666554332222 244444444 3456666666778888999999887 67889999999999999988788
Q ss_pred hhhhhhhcCCCchHHHHHHh-hc---ch-hhHHHHH-hc--CCCchhhhhccchhHHHHHHhc------cccccC-----
Q 002389 190 VIEDIKKKGLRLSDLATALK-RN---VP-EAAILIY-LI--KPSPTEIKTLELLPTLVEVICT------SKLYKG----- 250 (929)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~lk-~~---~~-~~~vl~~-l~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----- 250 (929)
+++.+.+.| -+.+++.+|+ ++ +. +|+-.++ |- +.-+..+.+ .-+|.|++.+.. ++...+
T Consensus 78 ~k~~i~~~G-~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 78 NKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHTT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHcC-CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence 888888775 6999999998 53 44 3433332 32 344455778 999999999942 111000
Q ss_pred ----------cccccccCchh--------hHHHHHHHHHhc------cccc-----------------------------
Q 002389 251 ----------KLESVRLTPPA--------ASLMIIEVLVTA------FDYA----------------------------- 277 (929)
Q Consensus 251 ----------~~~~~~~~p~~--------a~~~~~~~l~~~------~~~~----------------------------- 277 (929)
-+.+++..|.. -++-.|-++|.. .|..
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 00111222221 111112122221 1100
Q ss_pred -----------------------------------cchhhhhhhchhhhHhHHHHHhhcc-ChHHHHHHHHHHHhhhhcc
Q 002389 278 -----------------------------------TNNMHLAAINSPRVLCGLLDVARHQ-NLEELISLATILVKCIQFD 321 (929)
Q Consensus 278 -----------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~e~~~~~~~l~~c~~~d 321 (929)
.+......+..+++|+.|+.-+... +.+-+.+|+..|..+..-+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 0001112233455666666666543 4555666777777776666
Q ss_pred CcchhHH-----HhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccch
Q 002389 322 GQCRKYL-----SEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSD 396 (929)
Q Consensus 322 ~~cr~~i-----a~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~ 396 (929)
+.+..++ .+.--..++++||.+++...+..|...|..|-.=++ ...++ .+ | .|..|...|....++
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--~~~~i---~~-~---~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--LHRVM---GN-Q---VFPEVTRLLTSHTGN 386 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--GHHHH---HH-H---THHHHHHTTTSCCSC
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--HHHHH---HH-h---hhHHHHHhccCCCCC
Confidence 6654344 333346789999999999999999999999965322 22222 22 2 355666667665442
Q ss_pred ----hhHHHHHHHhhhc-cc-cCC-CCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 397 ----YQLLAANLLLQLD-TL-ENT-TGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 397 ----~~~~~a~lllqld-~l-~~~-~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
...+ +..+--|- ++ ++| ....+....+++.|++-+.+..+.+++..|+.+|-++-+
T Consensus 387 ~~~~~~v~-~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 387 TSNSEDIL-SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp STTHHHHH-HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred CCCcHHHH-HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 1122 22222222 11 233 233344556888888877766588899998888877654
No 291
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.27 E-value=0.0018 Score=72.18 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhc-chhhhhhhhhcCCCchHHHHHH-hhc---chhh--HHHHHhcC---
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILA-NESVIEDIKKKGLRLSDLATAL-KRN---VPEA--AILIYLIK--- 223 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-k~~---~~~~--~vl~~l~~--- 223 (929)
..+|..|++.|. |.+++|++.++..|..+... |+..++.+.+.| -+.+++.+| +.+ +.++ ..|-.|-.
T Consensus 126 ~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 345677777665 78899999999999999775 567788877665 488888864 533 4432 34444443
Q ss_pred CCchhhh-hccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHh---ccccccchhhhhhhchhhhHhHHHHHh
Q 002389 224 PSPTEIK-TLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT---AFDYATNNMHLAAINSPRVLCGLLDVA 299 (929)
Q Consensus 224 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (929)
.-+.++. ...-+|.|++.|..++.. .+ +.=++.|...|..|-. +.+ ++...+...|+|..|++.+
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~-~~-----~~v~~~A~~aL~nLs~~~a~~~-----~~~~~i~~~g~i~~Lv~lL 272 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQT-NT-----LAIIESGGGILRNVSSLIATNE-----DHRQILRENNCLQTLLQHL 272 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSS-SC-----CHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHTTTHHHHHHHHT
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCc-cc-----HHHHHHHHHHHHHHHhhccCCH-----HHHHHHHHcCCHHHHHHHH
Confidence 1245666 568999999999865432 10 0013456666666643 332 3445556788999999999
Q ss_pred hccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCch
Q 002389 300 RHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRS 365 (929)
Q Consensus 300 ~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~ 365 (929)
+.++.+-+..|+..|..+..-+...|..|.+.=-..|+++||++++.+.+..|..-|..|..-+..
T Consensus 273 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988766778899998887889999999999999999999999999987653
No 292
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.24 E-value=0.0013 Score=75.91 Aligned_cols=205 Identities=16% Similarity=0.055 Sum_probs=137.5
Q ss_pred CCCceeccchHHHHHHHHHHHhc----------CcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc--
Q 002389 144 KTGVKYDMLQDVILEQLLTAISA----------SKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN-- 211 (929)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~e~~~~----------s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~-- 211 (929)
++..+-.+.+.-+|.-|+..|.. +.++.+++.+..+|.-+...++...+.+...+.=+.+++.+|+++
T Consensus 178 ~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 257 (458)
T 3nmz_A 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257 (458)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence 34444456666677788888852 346789999999999988777766666654444488999999874
Q ss_pred -ch-h-hHHHHHhcCC----CchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhh
Q 002389 212 -VP-E-AAILIYLIKP----SPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLA 284 (929)
Q Consensus 212 -~~-~-~~vl~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~ 284 (929)
+. . +..|-+|-.. .+..+.+..-+|.|+++|..++.. . -++.|+..|-.|.+..| .+..
T Consensus 258 ~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~-~--------v~~~A~~aL~nLs~~~~-----~nk~ 323 (458)
T 3nmz_A 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-S--------TLKSVLSALWNLSAHCT-----ENKA 323 (458)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH-H--------HHHHHHHHHHHHHHHCH-----HHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH-H--------HHHHHHHHHHHHccCCH-----HHHH
Confidence 44 2 3355566542 234566678899999987543321 1 13566677777765332 2233
Q ss_pred hhc-hhhhHhHHHHHhhccCh----HHHHHHHHHHHhhhh---ccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHH
Q 002389 285 AIN-SPRVLCGLLDVARHQNL----EELISLATILVKCIQ---FDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFF 356 (929)
Q Consensus 285 ~~~-~~~~~~~l~~~~~~~~~----~e~~~~~~~l~~c~~---~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~ 356 (929)
++. ..|+|..|++.+..+.. +-+..++..|-..-. .+...|..|.+.=-..++++||.++....+..|...|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 444 57899999999876643 235556666654332 3445677777766688999999999999999999998
Q ss_pred HHHhcc
Q 002389 357 HEILRI 362 (929)
Q Consensus 357 ~el~~l 362 (929)
..|..-
T Consensus 404 ~nLa~~ 409 (458)
T 3nmz_A 404 WNLSAR 409 (458)
T ss_dssp HHHHSS
T ss_pred HHHHcC
Confidence 888643
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.21 E-value=0.053 Score=64.41 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=53.1
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE--EE--EcCC-E
Q 002389 839 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITS--LL--TAND-I 913 (929)
Q Consensus 839 DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vts--vs--~dg~-~ 913 (929)
++.+..||..+++.+-....+. ++..-.....+..++.|+.||.++.||.++|+.+.+++....+.+ +. .+|+ +
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 5789999999998765543322 222212223466788899999999999999999999987754332 44 4666 4
Q ss_pred EEEE
Q 002389 914 VLCG 917 (929)
Q Consensus 914 LaSg 917 (929)
+++.
T Consensus 544 v~~~ 547 (582)
T 1flg_A 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 294
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.19 E-value=0.004 Score=76.41 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHhcC-cchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-h-hHHHHHhcCCCch
Q 002389 154 DVILEQLLTAISAS-KEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-E-AAILIYLIKPSPT 227 (929)
Q Consensus 154 ~~~i~~~~e~~~~s-~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~-~~vl~~l~~~~~~ 227 (929)
..++..|..-|... .++++++.+|--|..+. .+..+++.|.....=+-.++.+|+++ +. . +.+|--+-.-...
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS-~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLT-LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT-TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh-CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 45567777777776 48999999999988884 45566666654333455556666652 21 2 2223222221111
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHH
Q 002389 228 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEEL 307 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 307 (929)
| +-+|.+...-+.++.. .....|.. |.+.+..+...++.-|+++.|+..++.++.+-|
T Consensus 455 q----~~~~~l~~la~~s~~~-----v~~~~~ld-------------~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vq 512 (810)
T 3now_A 455 Q----EMLPEMIELAKFAKQH-----IPEEHELD-------------DVDFINKRITVLANEGITTALCALAKTESHNSQ 512 (810)
T ss_dssp C----CCCCSCGGGTTTTCCS-----CCCSSCHH-------------HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHH
T ss_pred h----hhhHHHHHHHHHhhcc-----Cccccccc-------------cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHH
Confidence 1 1222221111111110 00001111 111222234567777999999999999988888
Q ss_pred HHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHH
Q 002389 308 ISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILK 387 (929)
Q Consensus 308 ~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l 387 (929)
..|+..|..=- .|..||..|.+.=-..|+++||.++....+..|..-|.-|..-.-. ...+..-. ....+.-|+
T Consensus 513 e~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p--~~~~~~~~---~~~aIppLv 586 (810)
T 3now_A 513 ELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP--EVSFSGQR---SLDVIRPLL 586 (810)
T ss_dssp HHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHTTTHH---HHHTHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh--hhhhcchh---hhcHHHHHH
Confidence 88888877544 5778999999998899999999999999999998888887653211 01100000 012455555
Q ss_pred HHhhcccchhhHHHH-HHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 388 LSLQQLQSDYQLLAA-NLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 388 ~~lq~~~~~~~~~~a-~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
..|+......+...| .-|-.|=-..|..+.-+.++.+++.|++-|.+ +++.+|..|+++|.+|..
T Consensus 587 ~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTT
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 555532221111111 11111100011123345667788899998886 478899999999999974
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.12 E-value=0.0074 Score=72.71 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=123.4
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEccCCeEEEEEEe--ccCCCe--EEeccCCCEEEEEec-CCeEEE
Q 002389 696 SFSLFE-PGESLLSGSADK-----------TIGVWQMVQRKLELIEVI--ATKEPI--RKLDTYGKTIFASTQ-GHRMKV 758 (929)
Q Consensus 696 slafsp-dg~~LaSgs~Dg-----------tIrIWDl~tg~~~~~~~~--~h~~~V--~s~s~~g~~L~sgs~-Dg~V~I 758 (929)
++++.+ +|+.++.|+.++ .+.+||..+++....... .+.... .++..++..+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 888888887543 688999988875432222 111111 245578888888874 458999
Q ss_pred EeCCCcee-ee---ccCCCeEEEEE-eCCEEE-EEE-CC-----CcEEEEEccCCccceec----ccccccccCCCCeEE
Q 002389 759 IDSSRTLK-DI---YRSKGIKSMSV-VQGKIY-IGC-MD-----SSIQELAVSNNVEREIK----APFKSWRLQSKPINS 822 (929)
Q Consensus 759 WDl~~~~~-~l---~~~~~V~sla~-sdg~ll-sgs-~D-----g~I~iwDl~tg~~~~i~----~~~~~~~~~~~~I~s 822 (929)
||.....- .. .....-.+... ++|+++ .|+ .+ ..+.+||..+++-..+. .+.... .+. .
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~-~~~----~ 344 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA-DKQ----G 344 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC-CTT----G
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc-ccc----c
Confidence 99873321 11 11112223344 488854 455 33 56899999886544331 010000 000 0
Q ss_pred EEEcCCceEEEEEe-------cCCCeEEEEECCCCCeEEEecCCC---------CCeEEEEEec-CCCEEEEEeCCC---
Q 002389 823 LVVYKDWLYSASSS-------VEGSNIKEWRRHRKPQISIAPEKG---------TTIQAMAVVE-DFIYLNYNSSAS--- 882 (929)
Q Consensus 823 l~~~~d~i~~~s~S-------~dDgtI~IWDl~~~~~i~~l~~h~---------~~V~slafSp-dg~~LaSgS~DG--- 882 (929)
+....+.++++.+. .....+..||..+.........+. ..-.++.|.. ++++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 00012222222211 013478899987766433222111 1224455543 788888888543
Q ss_pred --------cEEEEECCCCcEEEEE--eCC-CC--eEEEE-EcCCEEEEEECC-----------CcEEEeec
Q 002389 883 --------SLQIWLRGTQQKVGRI--SAG-SK--ITSLL-TANDIVLCGTET-----------GLIKGWIP 928 (929)
Q Consensus 883 --------~I~IWdl~sg~~i~tl--~~h-~~--Vtsvs-~dg~~LaSgs~D-----------G~I~IWdi 928 (929)
.|.+||..+.+..... ..+ .+ -.++. +++++++.||.+ ..+.+||+
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence 6888888776654332 212 12 23344 489999999865 45788875
No 296
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.12 E-value=0.015 Score=68.91 Aligned_cols=267 Identities=13% Similarity=0.139 Sum_probs=153.9
Q ss_pred cccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCch
Q 002389 123 LRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLS 202 (929)
Q Consensus 123 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~ 202 (929)
|.+-|..+...+-++= ..+|+-..+ ++.-|..|++.|. |.++++++.+...|..+...++.+++.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~------ 88 (584)
T 3l6x_A 21 LAQHERGSLASLDSLR---KGGPPPPNW--RQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRK------ 88 (584)
T ss_dssp ----------------------CCCCCC--CCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH------
T ss_pred ccccccchHHHHHHHH---hcCCCCCCc--ccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHH------
Confidence 5555644444444443 222322222 2234566677765 567788887777778777777777766643
Q ss_pred HHHHHHhhcchhhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhh
Q 002389 203 DLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMH 282 (929)
Q Consensus 203 ~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~ 282 (929)
..-+|.||+.|.+++.. - +..|+..|..|..+ +|.++
T Consensus 89 -----------------------------~G~Ip~LV~LL~s~~~~-v---------q~~Aa~AL~nLa~~----~~~~n 125 (584)
T 3l6x_A 89 -----------------------------LKGIPVLVGLLDHPKKE-V---------HLGACGALKNISFG----RDQDN 125 (584)
T ss_dssp -----------------------------TTHHHHHHHGGGCSSHH-H---------HHHHHHHHHHHTSS----SCHHH
T ss_pred -----------------------------cCCcHHHHHHHCCCCHH-H---------HHHHHHHHHHHHcc----CCHHH
Confidence 36688899999875533 1 46677777777432 13456
Q ss_pred hhhhchhhhHhHHHHHhhcc-ChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhh---c---------------
Q 002389 283 LAAINSPRVLCGLLDVARHQ-NLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQ---S--------------- 343 (929)
Q Consensus 283 ~~~~~~~~~~~~l~~~~~~~-~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~---~--------------- 343 (929)
..++..-|+|..|++.+..+ +.+-+..++..|..+-.- ...|..|.+. ...++++||. +
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~-alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDH-ALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHH-THHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhc-cHHHHHHHHhccccccccccccccccccc
Confidence 66777789999999999874 556577777777666554 4667777755 4889999872 1
Q ss_pred CCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcc----cchh---hHHHHHH---Hhhhc----
Q 002389 344 GEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQL----QSDY---QLLAANL---LLQLD---- 409 (929)
Q Consensus 344 ~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~----~~~~---~~~~a~l---llqld---- 409 (929)
.....+.+|...|..|-+-+-. ..+.+ +..+|.+ -.|+.|||.+ .+++ .+.+..| --+++
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~-~R~~i--~~~~Gli---~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSE-ARRKL--RECDGLV---DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHH-HHHHH--HHSTTHH---HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccHHHHHHHHHHHHHHhcCCHH-HHHHH--HHcCCcH---HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 1346778899999988874411 11111 1223432 2344444432 2222 2222222 12221
Q ss_pred ---c-------------ccCCCCCC-cchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 410 ---T-------------LENTTGKS-VFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 410 ---~-------------l~~~~~~s-~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
- ..+|.... .|.-+|+..++.-|..+.++.+|+.|+.||.+|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 0 11222221 3566899999999998889999999999999994
No 297
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.10 E-value=0.18 Score=53.31 Aligned_cols=204 Identities=10% Similarity=0.010 Sum_probs=120.5
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEecCCeEEEEeC
Q 002389 685 WDVKEHRKAVTSFSLFEPGESLLS-GSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 685 ~~l~gH~~~Vtslafspdg~~LaS-gs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
+.+.+-.+.+..++|+|++..|++ ...++.|...|.. ++.......+.....- ++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 355666678999999998877654 6668888888987 6654443332222223 33455555455445678888876
Q ss_pred CCce-----eee-------ccCCCeEEEEEe--CCEEEEEECCCcEEEEEccC---Cccceec-ccccccccCCCCeEEE
Q 002389 762 SRTL-----KDI-------YRSKGIKSMSVV--QGKIYIGCMDSSIQELAVSN---NVEREIK-APFKSWRLQSKPINSL 823 (929)
Q Consensus 762 ~~~~-----~~l-------~~~~~V~sla~s--dg~llsgs~Dg~I~iwDl~t---g~~~~i~-~~~~~~~~~~~~I~sl 823 (929)
.... ... ..+.....+++. .++++++.......+|.+.. +....+. .+...-......+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 5211 111 124457899997 44688777665555665541 1111110 0000001123346788
Q ss_pred EEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCC---------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 824 VVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK---------GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 824 ~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h---------~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
+++|........|.+++.+..+|.+.. ++..+.-. -..--.|+|.++|+..++ ++.+.+++|....
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~~ 253 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQS 253 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC--
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEecC
Confidence 888876555555657789999998765 44333211 125688999999986555 6777777776543
No 298
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.10 E-value=0.012 Score=67.58 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=125.4
Q ss_pred hhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhh-ccChHH
Q 002389 228 EIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVAR-HQNLEE 306 (929)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~e 306 (929)
.+....-+|.|++.|.+++.. - +..|...|..|..+ |.++...+..-|+|+.|++.++ .++.+-
T Consensus 39 ~i~~~g~i~~Lv~lL~s~~~~-~---------~~~A~~aL~nLa~~-----~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~ 103 (457)
T 1xm9_A 39 QVYQLGGICKLVDLLRSPNQN-V---------QQAAAGALRNLVFR-----STTNKLETRRQNGIREAVSLLRRTGNAEI 103 (457)
T ss_dssp HHHHTTHHHHHHHHTTSSCHH-H---------HHHHHHHHHHHHSS-----CHHHHHHHHHTTCHHHHHHHHTTCCCHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHH-H---------HHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHHhhCCCHHH
Confidence 344457789999998864422 1 46677777777553 3466667777899999999998 888888
Q ss_pred HHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhh--------cCCchhH--------HHHHHHHHHHhccCchhhHHH
Q 002389 307 LISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQ--------SGEKRAI--------MIALEFFHEILRIPRSSAIDL 370 (929)
Q Consensus 307 ~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~--------~~~~~~~--------~~~~~~~~el~~l~r~~~~~~ 370 (929)
+..++..|.....- ..+|..|.+ =-..+++++|. +...+.+ ..|+.-|..|-.- .+.
T Consensus 104 ~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-----~~~ 176 (457)
T 1xm9_A 104 QKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-----DAG 176 (457)
T ss_dssp HHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-----HHH
T ss_pred HHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-----HHH
Confidence 88888888755554 568998888 77889999993 3322222 2788888877753 122
Q ss_pred HHHhhcc-CchhHHHHHHHHhhccc----chhhHH--HHHHHhhh-----------------------------------
Q 002389 371 LQRIHKE-GNINILHILKLSLQQLQ----SDYQLL--AANLLLQL----------------------------------- 408 (929)
Q Consensus 371 l~~~~~~-~~~~~mh~~l~~lq~~~----~~~~~~--~a~lllql----------------------------------- 408 (929)
-+.+.+. |.+. .|+.+|+... ++.+-+ +..+|-.|
T Consensus 177 ~~~i~~~~g~i~---~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (457)
T 1xm9_A 177 RQTMRNYSGLID---SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNK 253 (457)
T ss_dssp HHHHTTSTTHHH---HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------
T ss_pred HHHHHHcCCCHH---HHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhcc
Confidence 2334443 6543 3444444320 111100 00011111
Q ss_pred ---------ccc-----cCCCC-CCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 409 ---------DTL-----ENTTG-KSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 409 ---------d~l-----~~~~~-~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
|+- .+|.+ .-++..+++..++.-|..+.++.+|+.|+.||.+|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 254 SDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312 (457)
T ss_dssp ------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred chhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Confidence 000 01111 135678899999999999999999999999999996
No 299
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.07 E-value=0.066 Score=63.81 Aligned_cols=78 Identities=10% Similarity=-0.055 Sum_probs=51.3
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE--E--EEcCC-E
Q 002389 839 GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRISAGSKITS--L--LTAND-I 913 (929)
Q Consensus 839 DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~~Vts--v--s~dg~-~ 913 (929)
.+.+..||..+++.+-..... .+...-.....+..++.++.||.++.||.++|+.+.+++.+..+.+ + ..+|+ +
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 478999999999876554321 1122111233566777799999999999999999999886643221 3 35666 4
Q ss_pred EEEE
Q 002389 914 VLCG 917 (929)
Q Consensus 914 LaSg 917 (929)
+++.
T Consensus 531 v~~~ 534 (599)
T 1w6s_A 531 VAIY 534 (599)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 300
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.93 E-value=0.63 Score=50.27 Aligned_cols=222 Identities=9% Similarity=0.003 Sum_probs=130.7
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCC---eEEEEEEe-ccCCC-eEEecc
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQR---KLELIEVI-ATKEP-IRKLDT 742 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg---~~~~~~~~-~h~~~-V~s~s~ 742 (929)
..|+..|+.+.+.. ..+. ....+.+++|++.+..|+ +-..++.|..++..+. ........ +...+ -.++.+
T Consensus 10 ~~I~~i~~~~~~~~--~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYT--SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCE--EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceE--ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 56888899876542 2332 345678999998776655 4455689999998751 21111111 11122 224555
Q ss_pred CCCEEEEE-ecCCeEEEEeCCCcee-eec--cCCCeEEEEEe--CCEEEEEECC--CcEEEEEccCCccceecccccccc
Q 002389 743 YGKTIFAS-TQGHRMKVIDSSRTLK-DIY--RSKGIKSMSVV--QGKIYIGCMD--SSIQELAVSNNVEREIKAPFKSWR 814 (929)
Q Consensus 743 ~g~~L~sg-s~Dg~V~IWDl~~~~~-~l~--~~~~V~sla~s--dg~llsgs~D--g~I~iwDl~tg~~~~i~~~~~~~~ 814 (929)
.+..++.+ ...+.|.+++.++... .+. .......+++. +|.++..... +.|..+++.......+. .
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~------~ 160 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------T 160 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE------C
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE------E
Confidence 56666555 5567999999875432 222 23457788886 6676665543 67888887643222221 1
Q ss_pred cCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002389 815 LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 815 ~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~--h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg 892 (929)
........+++.++...+.-.....+.|..+|.++......... .......+++. .+..+++-...+.|..++..+|
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 12345678888865333222233557899999876543332221 23456788885 4556666667789999998888
Q ss_pred cEEEEEeC
Q 002389 893 QKVGRISA 900 (929)
Q Consensus 893 ~~i~tl~~ 900 (929)
+.+..+..
T Consensus 240 ~~~~~i~~ 247 (316)
T 1ijq_A 240 SDVNLLAE 247 (316)
T ss_dssp CCCEEEEC
T ss_pred cceEEEec
Confidence 77666653
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.93 E-value=0.65 Score=50.40 Aligned_cols=265 Identities=9% Similarity=-0.034 Sum_probs=138.4
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCC-eeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeE
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQS-AMLVWD-VKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~-~~~i~~-l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~ 725 (929)
...+.+|.|. ++.++.++.+|.| ++..+.++ ...+.. .......+.++.|.+ + .++.++.++.|.. ..+.|+-
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCC
Confidence 4579999997 4443336677876 33344332 211110 112345788999976 3 4444556775543 2233331
Q ss_pred -EEEEEe-ccCCCeEEecc-CCCEEEEEecCCeE-EEEeCCCceeeecc--CCCeEEEEEe-CCEEEEEECCCcEEEEEc
Q 002389 726 -ELIEVI-ATKEPIRKLDT-YGKTIFASTQGHRM-KVIDSSRTLKDIYR--SKGIKSMSVV-QGKIYIGCMDSSIQELAV 798 (929)
Q Consensus 726 -~~~~~~-~h~~~V~s~s~-~g~~L~sgs~Dg~V-~IWDl~~~~~~l~~--~~~V~sla~s-dg~llsgs~Dg~I~iwDl 798 (929)
...... .....+..+.. .+..++.++.++.| +-.|-...-..... ...+..+.+. ++.+++.+.+|.+..-+-
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 111111 11223444331 23344455555544 33333322222222 3357788876 677777777776654432
Q ss_pred cCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec----CCCCCeEEEEEecCCC
Q 002389 799 SNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP----EKGTTIQAMAVVEDFI 873 (929)
Q Consensus 799 ~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~----~h~~~V~slafSpdg~ 873 (929)
..+.. ..+. ......+..+.+.+++...+.. .+|.++..+.+.+....... .+...+.++++.+++.
T Consensus 191 ~gG~tW~~~~------~~~~~~~~~~~~~~~g~~~~~~--~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~ 262 (327)
T 2xbg_A 191 PGQTAWEPHN------RTTSRRLHNMGFTPDGRLWMIV--NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE 262 (327)
T ss_dssp TTCSSCEEEE------CCSSSCEEEEEECTTSCEEEEE--TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred CCCCceeECC------CCCCCccceeEECCCCCEEEEe--CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence 11211 1110 1124566777777766544433 45677766433333222221 1234588999999888
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeC----CCCeEEEEE-cCCEEEEEECCCcEEEee
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISA----GSKITSLLT-ANDIVLCGTETGLIKGWI 927 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~----h~~Vtsvs~-dg~~LaSgs~DG~I~IWd 927 (929)
.++++. +|.| .+..+.|+.-..+.. +..+.++.+ ++..++.++.+|.|.-++
T Consensus 263 ~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 777765 7766 455555655444442 234777777 466788888999887664
No 302
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.91 E-value=0.0072 Score=71.24 Aligned_cols=201 Identities=11% Similarity=0.075 Sum_probs=121.5
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCeEEEEEEeccCCCeEE--e-c-cCCCEEEEEe------------------cCCeEE
Q 002389 701 EPGESLLSGS-ADKTIGVWQMVQRKLELIEVIATKEPIRK--L-D-TYGKTIFAST------------------QGHRMK 757 (929)
Q Consensus 701 pdg~~LaSgs-~DgtIrIWDl~tg~~~~~~~~~h~~~V~s--~-s-~~g~~L~sgs------------------~Dg~V~ 757 (929)
+||++++... .++.|.+.|+.+.++.............. + + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 3788865554 46679999999987655444433333444 3 4 8899998885 245788
Q ss_pred EEeCCCc--eeeeccCCCeEEEEEe-CCE-EEEEECCC---------------cEEEEEccCCccceecccccccccCCC
Q 002389 758 VIDSSRT--LKDIYRSKGIKSMSVV-QGK-IYIGCMDS---------------SIQELAVSNNVEREIKAPFKSWRLQSK 818 (929)
Q Consensus 758 IWDl~~~--~~~l~~~~~V~sla~s-dg~-llsgs~Dg---------------~I~iwDl~tg~~~~i~~~~~~~~~~~~ 818 (929)
+.|.... ..++.-......++++ +|+ +++.+.+. .+.++|....... +. . +
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~-v~------~--G- 248 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA-IA------A--G- 248 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH-HH------H--T-
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe-cc------C--C-
Confidence 8887732 1222222233445555 555 55555432 2455554332110 00 0 1
Q ss_pred CeEEEEEcCCceEEEEEecCCCeEEEEECCC--CCe-EEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc-
Q 002389 819 PINSLVVYKDWLYSASSSVEGSNIKEWRRHR--KPQ-ISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQQ- 893 (929)
Q Consensus 819 ~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~--~~~-i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg~- 893 (929)
...+. +.|.+.|..+ +.. +..+.. .....++.++|||++++.++ .+.+|.++|..+.+
T Consensus 249 ---------k~~~i-------~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 249 ---------DYQEL-------NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp ---------CSEEE-------TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred ---------CeeEE-------CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence 11111 3489999887 444 333322 23456899999999886665 78999999998653
Q ss_pred -----------EEEEEeCCCCeEEEEEc--CCEEEEEECCCcEEEeec
Q 002389 894 -----------KVGRISAGSKITSLLTA--NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 894 -----------~i~tl~~h~~Vtsvs~d--g~~LaSgs~DG~I~IWdi 928 (929)
.+..+..+.....++|+ |...++.--|+.|.+|++
T Consensus 312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp HHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred ccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 45666666667777776 633445666999999984
No 303
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.85 E-value=1.3 Score=53.86 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=149.8
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEec----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK----EHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~----gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
...|++|.-. ++++-.|..+| +..||-..- ..+. .....|.++.-..+| .|..|+.+| +..||..++
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~-----~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYST-----QQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCE-----EECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCce-----EEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCC
Confidence 5679999888 77888888887 445664321 1111 123468888777665 566666665 778998876
Q ss_pred eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC-ceeeec------cCCCeEEEEEe-CCEEEEEECCCcEEE
Q 002389 724 KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR-TLKDIY------RSKGIKSMSVV-QGKIYIGCMDSSIQE 795 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~-~~~~l~------~~~~V~sla~s-dg~llsgs~Dg~I~i 795 (929)
+... ........|.++..+...+..++.+ .+..||... ....+. ....|.++... +|.++.|+.+ -+..
T Consensus 93 ~f~~-~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~ 169 (758)
T 3ott_A 93 RYEQ-PETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCR 169 (758)
T ss_dssp EECC-CSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEE
T ss_pred EEEC-cccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhh
Confidence 5322 1111123465554445677777766 688888763 333331 13457888776 7888888865 4778
Q ss_pred EEccCCccceecccccccccCCCCeEEEEEcCC-c-eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCC
Q 002389 796 LAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-W-LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFI 873 (929)
Q Consensus 796 wDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-~-i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~ 873 (929)
++..++.......+.. .......|.++...++ . +++.+. +-+..+|..++............|.++...++|.
T Consensus 170 ~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~~~~lWigt~----~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVH-SSQSNLFVNSLLEDTTRQCVWIGTE----GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EETTTTEEEEECCCCC-TTCSSCCEEEEEEETTTTEEEEEEE----EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred CccCCCceEEecCCCc-cccccceeEEEEEECCCCEEEEEEC----CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 8877654332211110 0011234777776654 3 455442 2488889877654322111234588888888887
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeC---------CCCeEEEEEcC-CEEEEEECCC
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISA---------GSKITSLLTAN-DIVLCGTETG 921 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~---------h~~Vtsvs~dg-~~LaSgs~DG 921 (929)
+.+.. . +-+.+++..+++.. .+.. +..|.++..|. ..|..|+..|
T Consensus 245 lWigT-~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G 299 (758)
T 3ott_A 245 LLAGT-D-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG 299 (758)
T ss_dssp EEEEE-T-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred EEEEe-C-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence 66654 3 45888887665432 2221 12388888873 3566666666
No 304
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.84 E-value=0.045 Score=67.01 Aligned_cols=201 Identities=11% Similarity=0.051 Sum_probs=103.6
Q ss_pred cCCC-cEEEEEEc-CCCCEEEEEe-CC----CeEEEEEccCC-eEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEe
Q 002389 689 EHRK-AVTSFSLF-EPGESLLSGS-AD----KTIGVWQMVQR-KLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 689 gH~~-~Vtslafs-pdg~~LaSgs-~D----gtIrIWDl~tg-~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWD 760 (929)
+|.- .+...+|| |||++|+-+. .+ .+|+++|+.+| +......... ..-..|+++++.|+....+..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~~----- 243 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDET----- 243 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECTT-----
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECCC-----
Confidence 3443 67889999 9999877443 23 35999999988 5211111111 112347788877776655420
Q ss_pred CCCceeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccc-cCCCCeEEEEEcCCceEEEEEe--c
Q 002389 761 SSRTLKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWR-LQSKPINSLVVYKDWLYSASSS--V 837 (929)
Q Consensus 761 l~~~~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~-~~~~~I~sl~~~~d~i~~~s~S--~ 837 (929)
+ ....|+.+++.++..... .++. ........+.+++++.+++..+ .
T Consensus 244 ---------------------~------~~~~v~~~~lgt~~~~~~----lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 292 (751)
T 2xe4_A 244 ---------------------L------RENKVWRHVMGKLQSEDV----CLYEEHNPLFSAFMYKAADTNTLCIGSQSP 292 (751)
T ss_dssp ---------------------C------CEEEEEEEETTSCGGGCE----EEEECCCTTCEEEEEECTTSSEEEEEEECS
T ss_pred ---------------------C------CCCEEEEEECCCCchhcE----EEEecCCCceEEEEEECCCCCEEEEEecCC
Confidence 0 001233344433221100 0001 1112344567778776544332 2
Q ss_pred CCCeEEEEECCCC--Ce--EEEecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCcEEEE-EeCCC---CeE
Q 002389 838 EGSNIKEWRRHRK--PQ--ISIAPEKGTTIQAMAVVEDFIYLNYNSSA----SSLQIWLRGTQQKVGR-ISAGS---KIT 905 (929)
Q Consensus 838 dDgtI~IWDl~~~--~~--i~~l~~h~~~V~slafSpdg~~LaSgS~D----G~I~IWdl~sg~~i~t-l~~h~---~Vt 905 (929)
....|.++|+.++ .. ............++.|+.++.+++....+ ..|..++..++..... +-.+. .+.
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~ 372 (751)
T 2xe4_A 293 ETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFME 372 (751)
T ss_dssp SCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEE
T ss_pred CCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEE
Confidence 2346888888765 23 22333344455666655444444554443 3566677765322222 33332 266
Q ss_pred EEEEcCC-EEEEEECCCcEEEe
Q 002389 906 SLLTAND-IVLCGTETGLIKGW 926 (929)
Q Consensus 906 svs~dg~-~LaSgs~DG~I~IW 926 (929)
++.++++ ++++...||..++|
T Consensus 373 ~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 373 SIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEECSSEEEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEEEeCCEEEEE
Confidence 7777765 55677778876655
No 305
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.80 E-value=0.83 Score=50.16 Aligned_cols=222 Identities=10% Similarity=-0.014 Sum_probs=123.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEe-cCCeEEEEeCCCce-eeec-
Q 002389 695 TSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSSRTL-KDIY- 769 (929)
Q Consensus 695 tslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs-~Dg~V~IWDl~~~~-~~l~- 769 (929)
+|.+..+ ..+|+.+. ...|+..++....... ....... .. .+.+.++.++.+. ..+.|..++.++.. ..+.
T Consensus 37 ~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~-~~~~~~~-~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL-LLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSS-CCEEEEEC-BSCEEEECTTSCCEEE-EECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred ccccccc-CceeEeec-ccceEEEeCCCCeeEE-eecCCCc-eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 3444444 23444333 4457777776554322 2222222 33 4556666666665 56788889887532 2222
Q ss_pred -cCCCeEEEEEe--CCEEEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-ceEEEEEecCC-CeEE
Q 002389 770 -RSKGIKSMSVV--QGKIYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASSSVEG-SNIK 843 (929)
Q Consensus 770 -~~~~V~sla~s--dg~llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-~i~~~s~S~dD-gtI~ 843 (929)
.......+++. ++.++.. ...+.|.+++........+. .........++++|. +....+-. .+ +.|.
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~------~~~l~~P~~iavdp~~g~ly~td~-~~~~~I~ 185 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL------WQSLEKPRAIALHPMEGTIYWTDW-GNTPRIE 185 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE------CTTCSCEEEEEEETTTTEEEEEEC-SSSCEEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE------eCCCCCcceEEEecCcCeEEEecc-CCCCEEE
Confidence 12345677776 6776554 45678999888754322221 122345678888864 33223222 33 7888
Q ss_pred EEECCCCCeEEEecCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcCCEE-EEEECC
Q 002389 844 EWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNY-NSSASSLQIWLRGTQQKVGRISAG-SKITSLLTANDIV-LCGTET 920 (929)
Q Consensus 844 IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaS-gS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~dg~~L-aSgs~D 920 (929)
.++++...........-...+.++++|++..|.. -+..+.|..++.........+... ....++++++..+ ++-...
T Consensus 186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~ 265 (349)
T 3v64_C 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHT 265 (349)
T ss_dssp EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTT
T ss_pred EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCC
Confidence 8888765544333333456789999986665544 445678999998654333333322 2356666554444 444445
Q ss_pred CcEEEee
Q 002389 921 GLIKGWI 927 (929)
Q Consensus 921 G~I~IWd 927 (929)
+.|..++
T Consensus 266 ~~V~~~~ 272 (349)
T 3v64_C 266 KSINSAN 272 (349)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 6666554
No 306
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.79 E-value=0.0062 Score=70.21 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhc-chhhhhhhhhcCCCchHHHHHH-hhc---chh-hH-HHHHhcC---
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILA-NESVIEDIKKKGLRLSDLATAL-KRN---VPE-AA-ILIYLIK--- 223 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-k~~---~~~-~~-vl~~l~~--- 223 (929)
..+|..|++.|. |.+++|++.++..|..+... |+..++.+.+.| -+.+++.+| +.+ +.+ |+ .|-.|-.
T Consensus 242 ~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G-aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 242 KGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT-HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred CCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 334666777665 78899999999999998775 567788887655 578888865 432 443 22 3333332
Q ss_pred CCchhhh-hccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHh---ccccccchhhhhhhchhhhHhHHHHHh
Q 002389 224 PSPTEIK-TLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT---AFDYATNNMHLAAINSPRVLCGLLDVA 299 (929)
Q Consensus 224 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (929)
.-+.++. ...-+|.|++.|..++.. ++. .=++.|...|..|-. +. .++...+...|+|..|++.+
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~-~~~-----~v~~~A~~aL~nLs~~~a~~-----~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQT-NTL-----AIIESGGGILRNVSSLIATN-----EDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSS-STT-----HHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCc-chH-----HHHHHHHHHHHHHHhcccCC-----HHHHHHHHHcccHHHHHHHH
Confidence 2245666 668999999999865432 110 013445566666543 33 24455566788999999999
Q ss_pred hccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCc
Q 002389 300 RHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPR 364 (929)
Q Consensus 300 ~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r 364 (929)
..++.+-+..|+..|..+..-+..+|.+|.+.=-..|+++||++++.+.+..|..-|..|+.-++
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999988775677888999888778999999999999999999999999887553
No 307
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.67 E-value=0.99 Score=48.95 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=133.7
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeE-EEEEEeccCCC-eEEeccCC
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKL-ELIEVIATKEP-IRKLDTYG 744 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~-~~~~~~~h~~~-V~s~s~~g 744 (929)
...|+..|+.+........+.+ ...+..++|.+.+..|+ +-...+.|..++...+.. ......+...+ -.++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678899998763111122222 23467899998666654 555678899999876532 11111222222 23566655
Q ss_pred CEEEEE-ecCCeEEEEeCCCceee-ec--cCCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCccceecccccccccC
Q 002389 745 KTIFAS-TQGHRMKVIDSSRTLKD-IY--RSKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 745 ~~L~sg-s~Dg~V~IWDl~~~~~~-l~--~~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
..++.+ ...+.|.+++.++.... +. .......+++. +|.++.... .+.|..+++.......+. ...
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~------~~~ 164 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII------NSE 164 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE------CSS
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE------ECC
Confidence 655555 45678999998854322 22 23457788886 577776653 577888887653322221 112
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 896 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~ 896 (929)
-...+.+++.++...+.-.....+.|..+|.+.........+.......+++.. +..+.+-...+.|..++..+|+.+.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceE
Confidence 345677888864332222233567899999876554444443445667888864 3455556677899999998887766
Q ss_pred EEeC
Q 002389 897 RISA 900 (929)
Q Consensus 897 tl~~ 900 (929)
.+..
T Consensus 244 ~i~~ 247 (318)
T 3sov_A 244 EIHS 247 (318)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6654
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.65 E-value=0.58 Score=50.82 Aligned_cols=230 Identities=8% Similarity=-0.049 Sum_probs=120.7
Q ss_pred CCCEEEEEEeCCEEEEEECCCeEEEEECCCCC-eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 002389 649 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQS-AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLEL 727 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~-~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~ 727 (929)
...+.+|.|+++.++.++.+|.|.. ..+.++ ...+.....+.+.+..+.+.+++..++.+ .+|.|.. ..+.|+.-.
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence 4578899998765555667776544 333232 22111111244567888887777655555 4564422 222233211
Q ss_pred EEEeccCCCeEE--eccCCCEEEEEecCCeEEEEeCC-Cceeee--ccCCCeEEEEEe-CCEEEEEECCCcEEEEEccCC
Q 002389 728 IEVIATKEPIRK--LDTYGKTIFASTQGHRMKVIDSS-RTLKDI--YRSKGIKSMSVV-QGKIYIGCMDSSIQELAVSNN 801 (929)
Q Consensus 728 ~~~~~h~~~V~s--~s~~g~~L~sgs~Dg~V~IWDl~-~~~~~l--~~~~~V~sla~s-dg~llsgs~Dg~I~iwDl~tg 801 (929)
.........+.. +.+++..++++..++..+-+|-. ...... .....+..+.+. ++.++.++.+|.++..+...|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS 235 (327)
T ss_dssp EEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE
T ss_pred EeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCC
Confidence 122233344554 34556665555444444444542 222222 224457788876 778888888888777642222
Q ss_pred ccc-eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEec---CCCCCeEEEEEecCCCEEEE
Q 002389 802 VER-EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAP---EKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 802 ~~~-~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~---~h~~~V~slafSpdg~~LaS 877 (929)
..- .+..+. ......+..+.+.++....+... ++.+ .+..+.+..-.... .+...+.++.|.+++. ++.
T Consensus 236 ~tW~~~~~~~---~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~ 308 (327)
T 2xbg_A 236 ENWGELLSPL---RRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFI 308 (327)
T ss_dssp EEECCCBCTT---SSCCSCEEEEEESSSSCEEEEES--TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEE
T ss_pred CeeEeccCCc---ccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEE
Confidence 211 111000 01123577787776655544442 4555 45556565444443 2345688899986665 555
Q ss_pred EeCCCcEEEEE
Q 002389 878 NSSASSLQIWL 888 (929)
Q Consensus 878 gS~DG~I~IWd 888 (929)
++.+|.|.-++
T Consensus 309 ~G~~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQKGILLRYV 319 (327)
T ss_dssp ECSTTEEEEEC
T ss_pred EcCCceEEEEc
Confidence 56789877665
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.61 E-value=2.8 Score=53.65 Aligned_cols=265 Identities=12% Similarity=0.034 Sum_probs=148.1
Q ss_pred CCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC------CCEEEEEeC-CCeEEEEEcc
Q 002389 649 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP------GESLLSGSA-DKTIGVWQMV 721 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd------g~~LaSgs~-DgtIrIWDl~ 721 (929)
...|...+.++.+++.++ ++.+.++++..++....... .-.+.|.|+++.|. +++++.|.. |++++|+++.
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 456777777777777775 67888888776543322222 23568999999864 357888986 9999999998
Q ss_pred CCeEEEEEEeccCCCeEEe---c-cCCCEEEEEecCCeEEEEeCCC---cee----eeccCCCeEEEEEe--CCEEEEEE
Q 002389 722 QRKLELIEVIATKEPIRKL---D-TYGKTIFASTQGHRMKVIDSSR---TLK----DIYRSKGIKSMSVV--QGKIYIGC 788 (929)
Q Consensus 722 tg~~~~~~~~~h~~~V~s~---s-~~g~~L~sgs~Dg~V~IWDl~~---~~~----~l~~~~~V~sla~s--dg~llsgs 788 (929)
+-+.......+......++ . ....++..|-.||.+.-+.++. .+. ...+..+++-..+. ++.-+.++
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 7554433333222222322 1 1235788888999887666542 111 12234455544454 33333344
Q ss_pred CCCcEEEEEccCCccceecccccccccCCCCeEEEE-Ec----CCceEEEEEecCCCeEEEEECCCCC-e-EEEecCCCC
Q 002389 789 MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLV-VY----KDWLYSASSSVEGSNIKEWRRHRKP-Q-ISIAPEKGT 861 (929)
Q Consensus 789 ~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~-~~----~d~i~~~s~S~dDgtI~IWDl~~~~-~-i~~l~~h~~ 861 (929)
.+....++.-. +... + .+ .....+..++ ++ |++... . +++.++|..++.-. . ++.+ .-..
T Consensus 671 s~rp~liy~~~-~~l~-~-s~-----l~~~~v~~~~~F~se~~~~g~v~--~--~~~~LrI~~i~~~~~~~~~~i-pL~~ 737 (1158)
T 3ei3_A 671 SDRPTVIYSSN-HKLV-F-SN-----VNLKEVNYMCPLNSDGYPDSLAL--A--NNSTLTIGTIDEIQKLHIRTV-PLYE 737 (1158)
T ss_dssp SSSCEEEEESS-SSEE-E-EE-----BSSSCCCEEEEECCSSSTTEEEE--E--CSSCEEEEEECCSSSEEEEEE-ECSS
T ss_pred CCCCEEEEEcC-CceE-E-ec-----cChHHhceEeccCcccCCCcEEE--E--cCCceEEEEecccCCeeEEEE-eCCC
Confidence 45554444332 2211 1 01 1112232222 22 333332 2 34568887764322 1 2222 2235
Q ss_pred CeEEEEEecCCCEEEEEeC-------------------------------------------------CCcEEEEECCCC
Q 002389 862 TIQAMAVVEDFIYLNYNSS-------------------------------------------------ASSLQIWLRGTQ 892 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS~-------------------------------------------------DG~I~IWdl~sg 892 (929)
.++.++++|+.+.++.+.. -+.|++.|..++
T Consensus 738 Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~ 817 (1158)
T 3ei3_A 738 SPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF 817 (1158)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC
T ss_pred CceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC
Confidence 6788888887765443321 134778888888
Q ss_pred cEEEEEeCCC--CeEEEE---Ec---CCEEEEEE----------CCCcEEEeec
Q 002389 893 QKVGRISAGS--KITSLL---TA---NDIVLCGT----------ETGLIKGWIP 928 (929)
Q Consensus 893 ~~i~tl~~h~--~Vtsvs---~d---g~~LaSgs----------~DG~I~IWdi 928 (929)
+.+..++-.. .+.|+. +. ..+++.|+ ..|+|++|++
T Consensus 818 ~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v 871 (1158)
T 3ei3_A 818 EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQY 871 (1158)
T ss_dssp CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEE
Confidence 8887776542 366654 43 35888887 3578888874
No 310
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.61 E-value=0.0099 Score=64.51 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhhhhhccc-----------ccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhh
Q 002389 104 SELLEIIEKAISSLFFSG-----------DLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETV 172 (929)
Q Consensus 104 ~~~~~~l~~~i~~~~~s~-----------~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v 172 (929)
.+-...++.++..|-..+ ++.+.+ .|.-.+..+-+... -...+.+--.+.-|++-+..|.+++|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~-~Al~~L~~lv~~~d----na~~~~~~G~l~~Lv~~lL~s~~~~v 98 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQERE-GALELLADLCENMD----NAADFCQLSGMHLLVGRYLEAGAAGL 98 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHH-HHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHTTTTCSSHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHH-HHHHHHHHHHhChh----hHHHHHHcCCHHHHHHHHHcCCCHHH
Confidence 455667777777776531 122222 33333443332111 11113333345556663446889999
Q ss_pred hhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCcc
Q 002389 173 IRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKL 252 (929)
Q Consensus 173 ~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (929)
.+.++.+|+.+...|+..++.+.+. .-+|.|++.|..+... .
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~-----------------------------------g~l~~Ll~LL~~~~~~-~-- 140 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGL-----------------------------------GALRKLLRLLDRDACD-T-- 140 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT-----------------------------------THHHHHHHHHHHCSCH-H--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHC-----------------------------------CCHHHHHHHHccCCCH-H--
Confidence 9999999999999888887776543 4567777777643111 0
Q ss_pred cccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhc
Q 002389 253 ESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFT 332 (929)
Q Consensus 253 ~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~ 332 (929)
=++.|++.|-.|..+++ ....++...++++.|++.+..++.+=+..|+..|..-..-+...+.++.+.=
T Consensus 141 ------v~~~A~~ALsnl~~~~~-----~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g 209 (296)
T 1xqr_A 141 ------VRVKALFAISCLVREQE-----AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209 (296)
T ss_dssp ------HHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHcCCc-----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 04667777777766543 2333455568899999999999999899998888765555777888888887
Q ss_pred CccchhhhhhcCCchhHHHHHHHHHHHhccC
Q 002389 333 AVAPLACLLQSGEKRAIMIALEFFHEILRIP 363 (929)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~ 363 (929)
-..++++||.+.+...+..|+..|..|+...
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 8899999999999999999999999999773
No 311
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.61 E-value=1.3 Score=49.56 Aligned_cols=230 Identities=9% Similarity=0.000 Sum_probs=134.4
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEEccCCe----EEEEEEeccCC
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSG-SADKTIGVWQMVQRK----LELIEVIATKE 735 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSg-s~DgtIrIWDl~tg~----~~~~~~~~h~~ 735 (929)
+|+.+. ...|+..++.+.... ..+ .....+..++|++.+..|+-+ ...+.|+.+++.... ...........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~--~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT--SLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE--EEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred eeEEec-cceeEEEccCCccee--Eec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 444333 467888898876542 222 345678899999877766544 457888888886521 11111111111
Q ss_pred C-eEEeccCCCEEEEEe-cCCeEEEEeCCCceee-ec--cCCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCcccee
Q 002389 736 P-IRKLDTYGKTIFAST-QGHRMKVIDSSRTLKD-IY--RSKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREI 806 (929)
Q Consensus 736 ~-V~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~~~-l~--~~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i 806 (929)
+ -.++.+.+..|+.+. ..+.|.+.++++.... +. .......+++. +|.++.... .+.|...++.......+
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 1 124566555565554 5678999988854332 22 23457788886 677666553 36788888865433222
Q ss_pred cccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcE
Q 002389 807 KAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDFIYLNYNSSASSL 884 (929)
Q Consensus 807 ~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~--h~~~V~slafSpdg~~LaSgS~DG~I 884 (929)
. ...-.....+++.++...+.-.....+.|..+|.+.......... .-....++++. .+..+++-...+.|
T Consensus 241 ~------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 241 V------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp E------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred E------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 1 112345677888854332222233567899999876654333332 23345677774 34455566677899
Q ss_pred EEEECCCCcEEEEEeCC
Q 002389 885 QIWLRGTQQKVGRISAG 901 (929)
Q Consensus 885 ~IWdl~sg~~i~tl~~h 901 (929)
..+|..+|+.+..+..+
T Consensus 314 ~~~~~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAEN 330 (400)
T ss_dssp EEEESSSCCCCEEEECS
T ss_pred EEEEcCCCCceEEEecC
Confidence 99998888877776644
No 312
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.56 E-value=0.52 Score=57.56 Aligned_cols=237 Identities=9% Similarity=-0.049 Sum_probs=123.5
Q ss_pred CCCC-CEEEEEEe-CC--EEEEE-ECCC----eEEEEECCCC-CeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----
Q 002389 647 KCSG-AVTALIYY-KG--LLCSG-FSDG----SIKMWDIKKQ-SAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD---- 712 (929)
Q Consensus 647 gH~~-~Vtsl~fs-~~--~LaSG-s~DG----tIrIWD~~~~-~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D---- 712 (929)
+|.- .+...+|| ++ +||-+ +.+| +|+++|+.++ +.. ...+. ....+++|+|||+.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 4553 67888998 44 55533 3333 5999999987 521 11111 113467899999987766655
Q ss_pred -CeEEEEEccCCeEE--EEEEeccCCCeE--EeccCCCEEEEEecC---CeEEEEeCCCc---e--eeecc--CCCeEEE
Q 002389 713 -KTIGVWQMVQRKLE--LIEVIATKEPIR--KLDTYGKTIFASTQG---HRMKVIDSSRT---L--KDIYR--SKGIKSM 777 (929)
Q Consensus 713 -gtIrIWDl~tg~~~--~~~~~~h~~~V~--s~s~~g~~L~sgs~D---g~V~IWDl~~~---~--~~l~~--~~~V~sl 777 (929)
..|..+++.++... ............ .++++|++|+..+.+ ..|.++|+... . ..+.. .....++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 36888888776421 111111122222 588999988877633 47888888742 2 33332 2345666
Q ss_pred EEe-CCEEEEEECC-----CcEEEEEccCC-ccce-ecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEEC
Q 002389 778 SVV-QGKIYIGCMD-----SSIQELAVSNN-VERE-IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRR 847 (929)
Q Consensus 778 a~s-dg~llsgs~D-----g~I~iwDl~tg-~~~~-i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl 847 (929)
.++ ++.++..+.. ..|..+|+.++ .... +.. ......+..+....+.++.. .. .++ .+.++|+
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-----~~~~~~l~~~~~~~~~lv~~-~~-~~g~~~l~~~dl 398 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-----HSEDVFMESIAVRSNYLVVA-GR-RAGLTRIWTMMA 398 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-----CCSSEEEEEEEECSSEEEEE-EE-ETTEEEEEEEEC
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-----CCCCcEEEEEEEECCEEEEE-EE-eCCEEEEEEEec
Confidence 655 5555554432 25666676542 2122 111 01112345566555443333 32 344 4566675
Q ss_pred -------CCCCeEEEecCC-CCCeEEEEE----ecCCC-EEEEEeCC---CcEEEEECCCCcE
Q 002389 848 -------HRKPQISIAPEK-GTTIQAMAV----VEDFI-YLNYNSSA---SSLQIWLRGTQQK 894 (929)
Q Consensus 848 -------~~~~~i~~l~~h-~~~V~slaf----Spdg~-~LaSgS~D---G~I~IWdl~sg~~ 894 (929)
.++.....+.-. ...+..+.+ ++++. ++++.+.. +.++.+|+.+++.
T Consensus 399 ~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 399 DSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 344412222211 122333332 34554 44444433 4677778777653
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.55 E-value=1.7 Score=55.70 Aligned_cols=270 Identities=11% Similarity=0.049 Sum_probs=145.1
Q ss_pred CCCEEEEEEe--C------CEEEEEEC-CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEc--CCCCEEEEEeCCCeEEE
Q 002389 649 SGAVTALIYY--K------GLLCSGFS-DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF--EPGESLLSGSADKTIGV 717 (929)
Q Consensus 649 ~~~Vtsl~fs--~------~~LaSGs~-DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafs--pdg~~LaSgs~DgtIrI 717 (929)
.+.|.|+++. + .+++.|.+ |++|+|+++.+.+......+.+ .....++.+. ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 4579999986 1 48999997 9999999998765433344432 2234444433 23456889999998765
Q ss_pred EEc--cCCeEEEE--EEeccCCCeE--EeccCCCEEEEEecCCeEEEEeCCCceeeecc-CCCeEEE-EEe----CCEEE
Q 002389 718 WQM--VQRKLELI--EVIATKEPIR--KLDTYGKTIFASTQGHRMKVIDSSRTLKDIYR-SKGIKSM-SVV----QGKIY 785 (929)
Q Consensus 718 WDl--~tg~~~~~--~~~~h~~~V~--s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~-~~~V~sl-a~s----dg~ll 785 (929)
+.+ .+|.+... ...+. .++. .+...+..-+.+..+....+|.-++......- -..+..+ .|+ .+-++
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~-~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGT-QPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCS-SCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEEcCCCCccccceeEEcCC-CceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence 554 45554332 22332 2332 34444444334444444444444433222111 1223333 233 22344
Q ss_pred EEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEec---------------------------
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSV--------------------------- 837 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~--------------------------- 837 (929)
+..++.+++..+..-....+ +.... +..++.+.+||... +.+..+.
T Consensus 711 -~~~~~~LrI~~i~~~~~~~~----~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1158)
T 3ei3_A 711 -LANNSTLTIGTIDEIQKLHI----RTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVS 784 (1158)
T ss_dssp -EECSSCEEEEEECCSSSEEE----EEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEEC
T ss_pred -EEcCCceEEEEecccCCeeE----EEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccc
Confidence 34455688887754221111 11111 34556666665432 2221110
Q ss_pred --------------------CCCeEEEEECCCCCeEEEecC-CCCCeEEEEE---ec-CCCEEEEEe----------CCC
Q 002389 838 --------------------EGSNIKEWRRHRKPQISIAPE-KGTTIQAMAV---VE-DFIYLNYNS----------SAS 882 (929)
Q Consensus 838 --------------------dDgtI~IWDl~~~~~i~~l~~-h~~~V~slaf---Sp-dg~~LaSgS----------~DG 882 (929)
.-+.|++.|..+.+.+..+.- ....+.+++. .. ...+++.|. ..|
T Consensus 785 ~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 785 SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred ccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 013577888777776554432 2234555543 22 247888876 348
Q ss_pred cEEEEECCCCcE--EEEEeCCCCeEEEE-EcCCEEEEEECCCcEEEeec
Q 002389 883 SLQIWLRGTQQK--VGRISAGSKITSLL-TANDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 883 ~I~IWdl~sg~~--i~tl~~h~~Vtsvs-~dg~~LaSgs~DG~I~IWdi 928 (929)
.|++|++.+++. +......++|++++ ++|++++ |- .++|++|+.
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla-~i-g~~l~vy~l 911 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLA-SI-NSTVRLYEW 911 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEE-EE-TTEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEE-Ec-CCEEEEEEC
Confidence 899999864433 44445557799987 6675444 43 367999874
No 314
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.55 E-value=1 Score=50.22 Aligned_cols=222 Identities=10% Similarity=-0.012 Sum_probs=123.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCe-EEeccCCCEEEEEe-cCCeEEEEeCCCce-eeecc--
Q 002389 696 SFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI-RKLDTYGKTIFAST-QGHRMKVIDSSRTL-KDIYR-- 770 (929)
Q Consensus 696 slafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V-~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~-~~l~~-- 770 (929)
|.+..+ ..+|+.+. ...|+..++..+..... ......+. ..+.+.++.++.+. ..+.|..++.++.. ..+..
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~-~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLL-LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred ECCccc-cceeEeec-CccceeeccCCCcEEEE-ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 333334 33444333 45678888876543222 22222222 24555566666654 56789899887542 22222
Q ss_pred CCCeEEEEEe--CCEEEEEE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCce-EEEEEecCC-CeEEEE
Q 002389 771 SKGIKSMSVV--QGKIYIGC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWL-YSASSSVEG-SNIKEW 845 (929)
Q Consensus 771 ~~~V~sla~s--dg~llsgs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i-~~~s~S~dD-gtI~IW 845 (929)
......+++. ++.++... ..+.|.++++.......+ ..........+++.|..- +..+-. .. +.|..+
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l------~~~~l~~P~giavdp~~g~ly~td~-~~~~~I~r~ 230 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL------LWQSLEKPRAIALHPMEGTIYWTDW-GNTPRIEAS 230 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE------ECSSCSCEEEEEEETTTTEEEEEEC-SSSCEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe------ecCCCCCCcEEEEEcCCCeEEEecc-CCCCEEEEE
Confidence 2334566765 67765544 466788887765332222 112234567888886433 222222 33 688888
Q ss_pred ECCCCCeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcCC-EEEEEECCCc
Q 002389 846 RRHRKPQISIAPEKGTTIQAMAVVEDFIYLN-YNSSASSLQIWLRGTQQKVGRISAG-SKITSLLTAND-IVLCGTETGL 922 (929)
Q Consensus 846 Dl~~~~~i~~l~~h~~~V~slafSpdg~~La-SgS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~dg~-~LaSgs~DG~ 922 (929)
+.+...........-...+.++++|++..|. +-+..+.|..+++........+..+ ....++++++. .+++-...+.
T Consensus 231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~ 310 (386)
T 3v65_B 231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKS 310 (386)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTE
T ss_pred eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCe
Confidence 8877654444444445678999998666554 4446688999998654333333322 33566666644 4445555667
Q ss_pred EEEee
Q 002389 923 IKGWI 927 (929)
Q Consensus 923 I~IWd 927 (929)
|..++
T Consensus 311 V~~~~ 315 (386)
T 3v65_B 311 INSAN 315 (386)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76665
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.51 E-value=0.33 Score=51.66 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=117.8
Q ss_pred EEEEEEC--CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEccCCeEEEEEEecc-
Q 002389 661 LLCSGFS--DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD----KTIGVWQMVQRKLELIEVIAT- 733 (929)
Q Consensus 661 ~LaSGs~--DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D----gtIrIWDl~tg~~~~~~~~~h- 733 (929)
.++.|+. ...+.+||..+.+...+..+......-..+.+ ++..++.|+.+ ..+.+||..+++.........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 36788999998765433333222222222222 56667777755 678899998887544322211
Q ss_pred CCCeEEeccCCCEEEEEecC------CeEEEEeCCCceee-ec---cCCCeEEEEEeCCEEEE-EEC---------CCcE
Q 002389 734 KEPIRKLDTYGKTIFASTQG------HRMKVIDSSRTLKD-IY---RSKGIKSMSVVQGKIYI-GCM---------DSSI 793 (929)
Q Consensus 734 ~~~V~s~s~~g~~L~sgs~D------g~V~IWDl~~~~~~-l~---~~~~V~sla~sdg~lls-gs~---------Dg~I 793 (929)
.........++..++.|+.+ ..+.+||.....-. .. ....-.++...+++++. |+. ...+
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 171 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC 171 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCE
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceE
Confidence 11112233455566666654 46888888743221 11 11122233445777554 442 3558
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC---CeEEEEECCCCCeEEEec--CCCCCeEEEEE
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG---SNIKEWRRHRKPQISIAP--EKGTTIQAMAV 868 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD---gtI~IWDl~~~~~i~~l~--~h~~~V~slaf 868 (929)
.+||..++.-..+... . ....-.++....+.++++.+.... ..+.+||..++.-...-. ........+.+
T Consensus 172 ~~yd~~~~~W~~~~~~----p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 172 EVYDPATETWTELCPM----I-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp EEEETTTTEEEEECCC----S-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred EEeCCCCCeEEECCCc----c-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 8999988765444211 0 111122334445566655432111 468899988765332211 11111222222
Q ss_pred ecCCCEEEEEeCC-----CcEEEEECCCCcE
Q 002389 869 VEDFIYLNYNSSA-----SSLQIWLRGTQQK 894 (929)
Q Consensus 869 Spdg~~LaSgS~D-----G~I~IWdl~sg~~ 894 (929)
++++++.|+.+ ..+.+||..+.+.
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 67788888754 5688999877544
No 316
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.45 E-value=1.2 Score=49.90 Aligned_cols=215 Identities=13% Similarity=0.042 Sum_probs=126.6
Q ss_pred CCCEEEEEEe--CCEE-EEEECCCeEEEEECCCCC--eeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEccC
Q 002389 649 SGAVTALIYY--KGLL-CSGFSDGSIKMWDIKKQS--AMLVWDVKEHRKAVTSFSLFEPGESL-LSGSADKTIGVWQMVQ 722 (929)
Q Consensus 649 ~~~Vtsl~fs--~~~L-aSGs~DGtIrIWD~~~~~--~~~i~~l~gH~~~Vtslafspdg~~L-aSgs~DgtIrIWDl~t 722 (929)
-..+..++|+ ++.| ++-..++.|+.+++.+.. ......+.........+++.+.+..| ++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 4578899998 4554 455567889999987521 01122233344567889999855554 4555678899999875
Q ss_pred CeEEEEEEeccCCCe-EEeccCCCEEEEEec--CCeEEEEeCCCceee-ecc--CCCeEEEEEe--CCEEEEEE-CCCcE
Q 002389 723 RKLELIEVIATKEPI-RKLDTYGKTIFASTQ--GHRMKVIDSSRTLKD-IYR--SKGIKSMSVV--QGKIYIGC-MDSSI 793 (929)
Q Consensus 723 g~~~~~~~~~h~~~V-~s~s~~g~~L~sgs~--Dg~V~IWDl~~~~~~-l~~--~~~V~sla~s--dg~llsgs-~Dg~I 793 (929)
.............|- .++.+.+..++.+.. .+.|...++++.... +.. -.....++++ +++++.+. ..+.|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 543222222222221 245676777777654 368888888854332 222 2457788887 56776654 46789
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEe
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVV 869 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafS 869 (929)
..+|+.......+... .........++...+.+|...+ ..+.|..+|..++.....+........++.+.
T Consensus 271 ~~~d~dG~~~~~~~~~----~~~l~~P~gl~v~~~~lywtd~--~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 271 SSIDVNGGNRKTILED----EKRLAHPFSLAVFEDKVFWTDI--INEAIFSANRLTGSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp EEEETTSCCCEEEEEC----SSTTSSEEEEEEETTEEEEEES--SSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred EEEeCCCCccEEEEeC----CCCCCCCEEEEEeCCEEEEecC--CCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 9999876443333110 1112344567777777776654 45788888876666555554444445555543
No 317
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.44 E-value=0.3 Score=55.57 Aligned_cols=229 Identities=6% Similarity=0.009 Sum_probs=129.0
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCe-EEeccCCCEEEEEecCC-----eEEEEeCCCce
Q 002389 693 AVTSFSLFE-PGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPI-RKLDTYGKTIFASTQGH-----RMKVIDSSRTL 765 (929)
Q Consensus 693 ~Vtslafsp-dg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V-~s~s~~g~~L~sgs~Dg-----~V~IWDl~~~~ 765 (929)
....++|+| ++..|+.+...+.|+.+|..++...... .....+. .+++++++.++++...+ .+..++..+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889998 4666777766688999999877643332 2222222 35778888777776521 34444544322
Q ss_pred ---eeeccCCCeEEEEEe--CCEEEEEE-CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 766 ---KDIYRSKGIKSMSVV--QGKIYIGC-MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 766 ---~~l~~~~~V~sla~s--dg~llsgs-~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
..+........+++. +|.++.+. .++.|..++..++....+.. .........+++++++.++.......
T Consensus 217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-----~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-----IQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-----CSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-----cCCCCcceeEEEcCCCCEEEEEECCC
Confidence 122233445666775 56766655 56789999987654322110 11123467899999887444444467
Q ss_pred CeEEEEECCC--CCe--EEEecCC---------------CCCeE-EEEEe--------cCCCEEEEEeCCCcEEEEECCC
Q 002389 840 SNIKEWRRHR--KPQ--ISIAPEK---------------GTTIQ-AMAVV--------EDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 840 gtI~IWDl~~--~~~--i~~l~~h---------------~~~V~-slafS--------pdg~~LaSgS~DG~I~IWdl~s 891 (929)
+.|..++.+. +.. ...+.+. -.... .++.. ++|.+.++-...+.|+.++ .+
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence 7899887653 221 1111111 01123 45553 3466666666678888888 45
Q ss_pred CcEEEEEeC---------C---------CCeEEEEEcC--C-EEEEEECCCcEEEeec
Q 002389 892 QQKVGRISA---------G---------SKITSLLTAN--D-IVLCGTETGLIKGWIP 928 (929)
Q Consensus 892 g~~i~tl~~---------h---------~~Vtsvs~dg--~-~LaSgs~DG~I~IWdi 928 (929)
|......-. . ...+.+++++ . ++++-...++|+.+++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 543322211 0 1366777763 3 4444445677887654
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.43 E-value=0.24 Score=52.66 Aligned_cols=227 Identities=11% Similarity=0.109 Sum_probs=115.6
Q ss_pred EEEEEECC----CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCeEEEEEEe
Q 002389 661 LLCSGFSD----GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRKLELIEVI 731 (929)
Q Consensus 661 ~LaSGs~D----GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-----gtIrIWDl~tg~~~~~~~~ 731 (929)
.++.|+.+ ..+..||..+.+...+..+......-..+.+ ++..++.|+.+ ..+.+||..+++.......
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 44555543 4588899988765433333221111122222 56666777754 3588899988775443221
Q ss_pred ccC-CCeEEeccCCCEEEEEecCC-----eEEEEeCCCceee-e---ccCCCeEEEEEeCCEEEE-EEC-------CCcE
Q 002389 732 ATK-EPIRKLDTYGKTIFASTQGH-----RMKVIDSSRTLKD-I---YRSKGIKSMSVVQGKIYI-GCM-------DSSI 793 (929)
Q Consensus 732 ~h~-~~V~s~s~~g~~L~sgs~Dg-----~V~IWDl~~~~~~-l---~~~~~V~sla~sdg~lls-gs~-------Dg~I 793 (929)
... ........++...+.|+.++ .+.+||.....-. . .....-.+++..+++++. |+. ...+
T Consensus 96 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 175 (302)
T 2xn4_A 96 RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTV 175 (302)
T ss_dssp SSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCE
T ss_pred CccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEE
Confidence 111 11122234566666666553 5778887632211 1 111122234445777554 443 2458
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEEecCCCCCeEEEEEec
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVE 870 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~~i~~l~~h~~~V~slafSp 870 (929)
..||..+++-..+... . ....-.++....+.++++.+... -+.+.+||..++.-...-.........-+...
T Consensus 176 ~~yd~~~~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 250 (302)
T 2xn4_A 176 ECYNATTNEWTYIAEM----S-TRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV 250 (302)
T ss_dssp EEEETTTTEEEEECCC----S-SCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEEeCCCCcEEECCCC----c-cccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE
Confidence 8999988665444211 0 11112234445566666544311 14688999887754332211111111112223
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcE
Q 002389 871 DFIYLNYNSSAS-----SLQIWLRGTQQK 894 (929)
Q Consensus 871 dg~~LaSgS~DG-----~I~IWdl~sg~~ 894 (929)
+++.++.|+.++ .+.+||..+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 677777777553 488999877654
No 319
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.39 E-value=0.54 Score=53.48 Aligned_cols=227 Identities=8% Similarity=0.022 Sum_probs=127.3
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCC-eEEeccCCCEEEEEecCC-----eEEEEeCCCc
Q 002389 693 AVTSFSLFEP--GESLLSGSADKTIGVWQMVQRKLELIEVIATKEP-IRKLDTYGKTIFASTQGH-----RMKVIDSSRT 764 (929)
Q Consensus 693 ~Vtslafspd--g~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~-V~s~s~~g~~L~sgs~Dg-----~V~IWDl~~~ 764 (929)
....++|+|+ +..|+.+...+.|+.+|..++....... ....+ -.+++++++ ++++...+ .+...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 5566666655899999998876543221 12212 225778888 55555422 2333332211
Q ss_pred e---eeeccCCCeEEEEEe--CCEEEEEE-CCCcEEEEEccCCcc-ceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 765 L---KDIYRSKGIKSMSVV--QGKIYIGC-MDSSIQELAVSNNVE-REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 765 ~---~~l~~~~~V~sla~s--dg~llsgs-~Dg~I~iwDl~tg~~-~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
. ..+........+++. +|.++.+. .++.|+.+|..++.. ..+.. .+.......+++++++.++.....
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-----~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-----MDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-----CSCCSSCEEEEECTTSSEEEEEET
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-----cCCCCCcccEEEeCCCCEEEEEeC
Confidence 1 111122334556665 56777655 467788998876544 11110 111222346888888764333334
Q ss_pred CCCeEEEEECC--CCCe--EEEecCC---------------CCCeEEEEE---------ecCCCEEEEEeCCCcEEEEEC
Q 002389 838 EGSNIKEWRRH--RKPQ--ISIAPEK---------------GTTIQAMAV---------VEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 838 dDgtI~IWDl~--~~~~--i~~l~~h---------------~~~V~slaf---------Spdg~~LaSgS~DG~I~IWdl 889 (929)
..+.|..++.+ ++.. ...+.+. -.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 56789988765 3321 1111111 124667999 777888888777889999985
Q ss_pred CCCcEEEEEeCC-------------------CCeEEEEEc---CCEEEEEECCCcEEEeec
Q 002389 890 GTQQKVGRISAG-------------------SKITSLLTA---NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 890 ~sg~~i~tl~~h-------------------~~Vtsvs~d---g~~LaSgs~DG~I~IWdi 928 (929)
+|. +.++.+. ....+++++ |.++++=...++|+.+++
T Consensus 373 -~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 553 4444321 125667766 335555555677887654
No 320
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.38 E-value=1.4 Score=47.35 Aligned_cols=208 Identities=11% Similarity=-0.005 Sum_probs=118.2
Q ss_pred CCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEec-CCeEEEEeCCC----c-eeeecc--CCCeEEEEEe-
Q 002389 712 DKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFASTQ-GHRMKVIDSSR----T-LKDIYR--SKGIKSMSVV- 780 (929)
Q Consensus 712 DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs~-Dg~V~IWDl~~----~-~~~l~~--~~~V~sla~s- 780 (929)
...|+..|+.+++.... .... .... .+.+.++.++.+.. ++.|..++.++ . ...+.. ......+++.
T Consensus 9 ~~~I~~i~~~~~~~~~~-~~~~-~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-IPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp BSSEEEEETTSCCCEEE-ECSC-SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCeEEEEECCCcceEeh-hcCC-CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 35578888877653322 2222 2233 35566666666654 57899998875 2 222221 2346677875
Q ss_pred -CCEEEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-ceEEEEEecCCCeEEEEECCCCCeEEEec
Q 002389 781 -QGKIYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASSSVEGSNIKEWRRHRKPQISIAP 857 (929)
Q Consensus 781 -dg~llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-~i~~~s~S~dDgtI~IWDl~~~~~i~~l~ 857 (929)
++.++.. ...+.|.+++........+. .........++.+|. +....+-....+.|..++++.........
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEE------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEE------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 6676654 45788999998754332221 112345678888864 33222221112688888887654333333
Q ss_pred CCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEE-eCC---CCeEEEEEcCCEE-EEEECCCcEEEeec
Q 002389 858 EKGTTIQAMAVVEDFIYLNYN-SSASSLQIWLRGTQQKVGRI-SAG---SKITSLLTANDIV-LCGTETGLIKGWIP 928 (929)
Q Consensus 858 ~h~~~V~slafSpdg~~LaSg-S~DG~I~IWdl~sg~~i~tl-~~h---~~Vtsvs~dg~~L-aSgs~DG~I~IWdi 928 (929)
..-...+.++++|++..|..+ +..+.|..+|..... ...+ ..+ ....+++.++..+ ++-...++|..++.
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 344568899999877666544 466799999986433 3333 221 2356777665544 45545677777664
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.29 E-value=0.26 Score=52.28 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=111.1
Q ss_pred CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCCe---EEEEEEecc-CCCeEE
Q 002389 669 GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-----KTIGVWQMVQRK---LELIEVIAT-KEPIRK 739 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-----gtIrIWDl~tg~---~~~~~~~~h-~~~V~s 739 (929)
..+.+||..+.+...+..+.........+. .++..++.|+.+ ..+.+||..+++ ......... ......
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 468899998876543332322212222222 256667777755 468899988876 433321111 111112
Q ss_pred eccCCCEEEEEecC-----CeEEEEeCCCcee-e---eccCCCeEEEEEeCCEEEE-EECC-----CcEEEEEccCCccc
Q 002389 740 LDTYGKTIFASTQG-----HRMKVIDSSRTLK-D---IYRSKGIKSMSVVQGKIYI-GCMD-----SSIQELAVSNNVER 804 (929)
Q Consensus 740 ~s~~g~~L~sgs~D-----g~V~IWDl~~~~~-~---l~~~~~V~sla~sdg~lls-gs~D-----g~I~iwDl~tg~~~ 804 (929)
...++..++.|+.+ +.+.+||.....- . ......-.++...+++++. |+.+ ..+..||..+++-.
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 23355555555543 3688888763221 1 1111112233344777544 5543 56889999886654
Q ss_pred eecccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 002389 805 EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA 881 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D 881 (929)
.+... . ....-.++....+.++++.+... -..+.+||..+..-...-..........+..-+++.++.|+.+
T Consensus 189 ~~~~~----p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 189 NVTPM----A-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYD 263 (301)
T ss_dssp EECCC----S-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eCCCC----C-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcC
Confidence 44211 0 01112234444566665544311 2468999998776433321111111111222367777777755
Q ss_pred -----CcEEEEECCCCcE
Q 002389 882 -----SSLQIWLRGTQQK 894 (929)
Q Consensus 882 -----G~I~IWdl~sg~~ 894 (929)
..+.+||..+.+.
T Consensus 264 ~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SSSBEEEEEEEETTTTEE
T ss_pred CCcccccEEEEcCCCCeE
Confidence 4578888876543
No 322
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=1.7 Score=49.19 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=86.6
Q ss_pred CEEEEEEeC---CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C----eEEEEEccC
Q 002389 651 AVTALIYYK---GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD-K----TIGVWQMVQ 722 (929)
Q Consensus 651 ~Vtsl~fs~---~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D-g----tIrIWDl~t 722 (929)
....+++++ +.|+.+...+.|+.+|..++.. ..+.........++|+++|++|+.+... + .+.+.+ ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v---~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV---STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE---EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE---EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CC
Confidence 456788873 4677666668899999987643 3333345568899999999976655542 1 233333 33
Q ss_pred CeEEE-EEEeccCCC-eEEecc-CCCEEEEEecCCeEEEEeCCCcee-eec---cCCCeEEEEEe-CCE-EEEEE-CCCc
Q 002389 723 RKLEL-IEVIATKEP-IRKLDT-YGKTIFASTQGHRMKVIDSSRTLK-DIY---RSKGIKSMSVV-QGK-IYIGC-MDSS 792 (929)
Q Consensus 723 g~~~~-~~~~~h~~~-V~s~s~-~g~~L~sgs~Dg~V~IWDl~~~~~-~l~---~~~~V~sla~s-dg~-llsgs-~Dg~ 792 (929)
+.... ........+ -.++.+ ++...++-..++.|..++...... .+. .......++++ +|. ++... ..+.
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 33220 111111111 224677 445444445668999999874332 222 12346788997 666 66554 5678
Q ss_pred EEEEEccC
Q 002389 793 IQELAVSN 800 (929)
Q Consensus 793 I~iwDl~t 800 (929)
|..++...
T Consensus 294 I~~~~~d~ 301 (430)
T 3tc9_A 294 ILRSDYDW 301 (430)
T ss_dssp EEEEEEET
T ss_pred EEEEeCCc
Confidence 88887653
No 323
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.13 E-value=0.039 Score=65.28 Aligned_cols=308 Identities=14% Similarity=0.091 Sum_probs=189.7
Q ss_pred CceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHh---h------------
Q 002389 146 GVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALK---R------------ 210 (929)
Q Consensus 146 ~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk---~------------ 210 (929)
.-+..+.+.-.|.-|++.|..+.+.++++.++..|..+-. ++.....|.+. -+.+|+.+|- +
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~--alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVDH--ALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHHH--THHHHHHHTHHHHHCCC---------
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHhc--cHHHHHHHHhcccccccccccccccc
Confidence 3333455666788999999988889999999989888876 56777777753 4888888761 0
Q ss_pred ------cch-hhHHHHHhcCCC----chhhhh-ccchhHHHHHHhcccc-ccCcccccccCchhhHHHHHHHHHhccc--
Q 002389 211 ------NVP-EAAILIYLIKPS----PTEIKT-LELLPTLVEVICTSKL-YKGKLESVRLTPPAASLMIIEVLVTAFD-- 275 (929)
Q Consensus 211 ------~~~-~~~vl~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~a~~~~~~~l~~~~~-- 275 (929)
.|. .|+-.|+-|--. ...|.+ -.++|.||++++..-. .+... +-.+-|+..|..|-...+
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-----~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-----KLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-----HHHHHHHHHHHHHHTTHHHH
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-----HHHHHHHHHHHHhhcccccc
Confidence 232 344455555322 333443 3568899999985310 00000 113556666666543311
Q ss_pred ------------------cccchhhhhhhchhhhHhHHHHHhhcc-ChHHHHHHHHHHHhhhhccC----cchhHHHhhc
Q 002389 276 ------------------YATNNMHLAAINSPRVLCGLLDVARHQ-NLEELISLATILVKCIQFDG----QCRKYLSEFT 332 (929)
Q Consensus 276 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~e~~~~~~~l~~c~~~d~----~cr~~ia~~~ 332 (929)
...+..-+..|..+++|+.|+..++.+ +.+-+.+|+..|..+..-++ ..|..|.+.-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 012233345556678888888888644 56667777777765544332 2355555555
Q ss_pred CccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccch------hhHHHHHHHh
Q 002389 333 AVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSD------YQLLAANLLL 406 (929)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~------~~~~~a~lll 406 (929)
-..++++||+++....+..|+..|..|-.-++. ..+ | ..| .++-|...|...... +..+++.+--
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~~~---I-~~g---~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~t 426 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARN--KEL---I-GKH---AIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--HHH---H-HHH---HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--HHH---H-HhC---CHHHHHHHhcCCcccccccchHHHHHHHHHH
Confidence 588899999999999999999999999875542 122 2 223 355555555544211 1112211110
Q ss_pred hhcc-ccCC-CCCCcchHHHHHHHHHHHhcc-CChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCch
Q 002389 407 QLDT-LENT-TGKSVFTEEAMQVILKAVASE-ESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSW 477 (929)
Q Consensus 407 qld~-l~~~-~~~s~yreea~~~~~~~l~~~-~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~~ 477 (929)
--.+ -++| ....|..+.++..|+.-|+++ ..++++..||.+|.+|-++ +.+ .-.+|+.||.+..
T Consensus 427 L~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~-----~el--r~~~kk~G~~~~~ 493 (584)
T 3l6x_A 427 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY-----KEL--RKPLEKEGWKKSD 493 (584)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS-----HHH--HHHHHTTTCCGGG
T ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC-----HHH--HHHHHHcCCCHHH
Confidence 0111 1344 344667778999999999886 5889999999999988653 222 2346778888763
No 324
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.12 E-value=3.9 Score=50.13 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=129.8
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCe----EEEEEEeccCC-CeEEe
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRK----LELIEVIATKE-PIRKL 740 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~----~~~~~~~~h~~-~V~s~ 740 (929)
....|+..++...... ..+ .....+..++|.+.+..|+ +-...+.|+.+++.... ........... .-.++
T Consensus 402 n~~~Ir~i~l~~~~~~--~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYT--SLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp CBSSEEEECTTSCCCE--EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred cccceeEeeccCCcce--eee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 3456788888765432 222 3355678999998666654 55556889888886521 11111111112 22356
Q ss_pred ccCCCEEEEEe-cCCeEEEEeCCCceee-ec--cCCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCccceecccccc
Q 002389 741 DTYGKTIFAST-QGHRMKVIDSSRTLKD-IY--RSKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREIKAPFKS 812 (929)
Q Consensus 741 s~~g~~L~sgs-~Dg~V~IWDl~~~~~~-l~--~~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i~~~~~~ 812 (929)
.+.++.|+.+. ..+.|.+.++++.... +. .......|++. .|.|+.... .+.|...++.......+.
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv----- 553 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----- 553 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-----
Confidence 66676666664 5578999998854432 22 23457888886 577776553 267888888654333221
Q ss_pred cccCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCCCeEEEecCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 002389 813 WRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRKPQISIAPEK--GTTIQAMAVVEDFIYLNYNSSASSLQIWL 888 (929)
Q Consensus 813 ~~~~~~~I~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h--~~~V~slafSpdg~~LaSgS~DG~I~IWd 888 (929)
.........|++.+. .+|.+ ....+.|..+++++.......... -....+|++..+ .++++-...+.|...|
T Consensus 554 -~~~l~~P~GLavD~~~~~LYwa--D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 554 -TENIQWPNGITLDLLSGRLYWV--DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 629 (791)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEE--ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred -eCCCCCceEEEEecCCCeEEEE--eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEe
Confidence 122345677887743 33333 235578999998776654444332 234556766433 4445555678888888
Q ss_pred CCCCcEEEEEeC
Q 002389 889 RGTQQKVGRISA 900 (929)
Q Consensus 889 l~sg~~i~tl~~ 900 (929)
..+|+.+..+..
T Consensus 630 k~tG~~~~~l~~ 641 (791)
T 3m0c_C 630 RLTGSDVNLLAE 641 (791)
T ss_dssp TTTCCCCEEEEC
T ss_pred CCCCcceEEeec
Confidence 888877666643
No 325
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.06 E-value=1.7 Score=49.25 Aligned_cols=234 Identities=8% Similarity=0.018 Sum_probs=124.2
Q ss_pred CCEEEEEEeC----CEEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----Ce-EEEEEc
Q 002389 650 GAVTALIYYK----GLLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD----KT-IGVWQM 720 (929)
Q Consensus 650 ~~Vtsl~fs~----~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D----gt-IrIWDl 720 (929)
.....|+|++ +.|+.+...+.|+.+|..++. +..+........+++|+++|+ |+.+... .. +...+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE---EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE---EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 3456888883 667766665899999997764 344444456689999999999 4444432 12 323332
Q ss_pred cCCeEEEEEEeccCCC-eEEeccCCCEEE-EEecCCeEEEEeCC-Cce-eeecc---CCCeEEEEEe-CCE-EEEEE-CC
Q 002389 721 VQRKLELIEVIATKEP-IRKLDTYGKTIF-ASTQGHRMKVIDSS-RTL-KDIYR---SKGIKSMSVV-QGK-IYIGC-MD 790 (929)
Q Consensus 721 ~tg~~~~~~~~~h~~~-V~s~s~~g~~L~-sgs~Dg~V~IWDl~-~~~-~~l~~---~~~V~sla~s-dg~-llsgs-~D 790 (929)
..+............+ -.++.+.+..++ +-..++.|+.+|.. +.. ..+.. ...-..++++ +|. ++... ..
T Consensus 215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 2221100011111111 124566334444 44466789999886 433 22211 2223468887 665 66554 46
Q ss_pred CcEEEEEccC--Cccc---eecc--cccccc------cCCCCeEEEEE---------cCCceEEEEEecCCCeEEEEECC
Q 002389 791 SSIQELAVSN--NVER---EIKA--PFKSWR------LQSKPINSLVV---------YKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 791 g~I~iwDl~t--g~~~---~i~~--~~~~~~------~~~~~I~sl~~---------~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
+.|+.++... +... .+.. ...-+. ..-.....+++ .+++.+.++- ...+.|+.++.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD-~~n~~I~~~~~- 372 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCD-RDSHTVRVLTP- 372 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEE-TTTTEEEEECT-
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEE-CCCCEEEEECC-
Confidence 7888887652 2111 0000 000000 01223556777 4555444433 25678888885
Q ss_pred CCCeEEEecCC------------------CCCeEEEEEe-cCCCEEEEEeCCCcEEEEECC
Q 002389 849 RKPQISIAPEK------------------GTTIQAMAVV-EDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 849 ~~~~i~~l~~h------------------~~~V~slafS-pdg~~LaSgS~DG~I~IWdl~ 890 (929)
.+... ++.+. -.....++++ ++|.++++-...+.|+.++++
T Consensus 373 ~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 34333 33221 1236788888 566666666666777777653
No 326
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.03 E-value=0.09 Score=54.85 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=88.3
Q ss_pred HHHHHHHhcCcch--hhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccch
Q 002389 158 EQLLTAISASKEE--TVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELL 235 (929)
Q Consensus 158 ~~~~e~~~~s~~~--~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~ 235 (929)
..|++.|. |.++ +++..+...|.-+...|+.+++.+. +..-+
T Consensus 11 ~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-----------------------------------~~G~I 54 (233)
T 3tt9_A 11 ERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVN-----------------------------------QLRGI 54 (233)
T ss_dssp HHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH-----------------------------------HTTHH
T ss_pred HHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHH-----------------------------------HcCCH
Confidence 33444443 4444 7776666666666666766666653 34668
Q ss_pred hHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhh-ccChHHHHHHHHHH
Q 002389 236 PTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVAR-HQNLEELISLATIL 314 (929)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~e~~~~~~~l 314 (929)
|.||+.|.+++.. =+..|...|..|-.+ +.++..++..-|+|+.|++.+. .++.+.+..|+..|
T Consensus 55 p~LV~lL~s~~~~----------vq~~Aa~aL~nLa~~-----~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL 119 (233)
T 3tt9_A 55 LKLLQLLKVQNED----------VQRAVCGALRNLVFE-----DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119 (233)
T ss_dssp HHHHHGGGCCCHH----------HHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH----------HHHHHHHHHHHHHhC-----CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999999875532 146777778777442 3356666777899999999997 57888899999888
Q ss_pred HhhhhccCcchhHHHhhcCccchhhhh
Q 002389 315 VKCIQFDGQCRKYLSEFTAVAPLACLL 341 (929)
Q Consensus 315 ~~c~~~d~~cr~~ia~~~~~~~~~~l~ 341 (929)
..+--.+..+ ..|.+. ...|+++++
T Consensus 120 ~nLS~~~~~k-~~i~~~-~i~~Lv~ll 144 (233)
T 3tt9_A 120 WNLSSNDKLK-NLMITE-ALLTLTENI 144 (233)
T ss_dssp HHHHTSGGGH-HHHHHH-HHHHHCCCC
T ss_pred HHHHcChhhH-HHHHhc-cHHHHHHHH
Confidence 8776555444 445444 467788866
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.96 E-value=1.1 Score=47.83 Aligned_cols=225 Identities=6% Similarity=-0.048 Sum_probs=115.0
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-----C------CeEEEEEccCCeEEEEE
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA-----D------KTIGVWQMVQRKLELIE 729 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~-----D------gtIrIWDl~tg~~~~~~ 729 (929)
+++.|+ ..+.+||..+++... ..+..............++..++.|+. . ..+.+||..+++.....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 578999999987643 333322222233333457777777773 1 12778898887653321
Q ss_pred EeccCCCe---EEeccCCCEEEEEecC--------CeEEEEeCCCcee-eec---cCCCeEEEEEeCCEEE-EEEC----
Q 002389 730 VIATKEPI---RKLDTYGKTIFASTQG--------HRMKVIDSSRTLK-DIY---RSKGIKSMSVVQGKIY-IGCM---- 789 (929)
Q Consensus 730 ~~~h~~~V---~s~s~~g~~L~sgs~D--------g~V~IWDl~~~~~-~l~---~~~~V~sla~sdg~ll-sgs~---- 789 (929)
. ...+- .....++...+.|+.+ +.+.+||.....- ... ....-.++...+++++ .|+.
T Consensus 84 ~--~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 P--LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp C--BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred C--CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 1 11111 1122345555555532 3688888874321 111 1111223444577744 4554
Q ss_pred --CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC---CeEEEEECCCCCeEEEecCCCCCeE
Q 002389 790 --DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG---SNIKEWRRHRKPQISIAPEKGTTIQ 864 (929)
Q Consensus 790 --Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD---gtI~IWDl~~~~~i~~l~~h~~~V~ 864 (929)
-..+.+||..+++-..+... . ....-.+.....+.++++.+...+ ..+.+||..+..-...-........
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 236 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPM----Q-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSS 236 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCC----S-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred cccceEEEEeCCCCeEEECCCC----C-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 24688999988654443211 0 111223344456667766554222 2678899887754332211111111
Q ss_pred EEEEecCCCEEEEEeCC--------------CcEEEEECCCCcEE
Q 002389 865 AMAVVEDFIYLNYNSSA--------------SSLQIWLRGTQQKV 895 (929)
Q Consensus 865 slafSpdg~~LaSgS~D--------------G~I~IWdl~sg~~i 895 (929)
..+..-+++.++.|+.+ ..+.+||..+.+-.
T Consensus 237 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 237 LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 11122366777777753 24778888776543
No 328
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.93 E-value=1.5 Score=48.14 Aligned_cols=224 Identities=10% Similarity=0.108 Sum_probs=113.8
Q ss_pred CEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEec---cCCCcEEEEEEcCC---CCEEEEEeC-C-----CeEEE
Q 002389 651 AVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLFEP---GESLLSGSA-D-----KTIGV 717 (929)
Q Consensus 651 ~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~---gH~~~Vtslafspd---g~~LaSgs~-D-----gtIrI 717 (929)
.-+.++|. ++.++.+..+|.|++++ +++...+..+. ........++|+|+ +..|+.+.. + +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 45789998 66677778889999999 34333333332 22456889999998 556554433 2 67778
Q ss_pred EEccCCeEE---E-EE-Ee-----ccCCCeEEeccCCCEEEEEec-------------CCeEEEEeCCCcee--------
Q 002389 718 WQMVQRKLE---L-IE-VI-----ATKEPIRKLDTYGKTIFASTQ-------------GHRMKVIDSSRTLK-------- 766 (929)
Q Consensus 718 WDl~tg~~~---~-~~-~~-----~h~~~V~s~s~~g~~L~sgs~-------------Dg~V~IWDl~~~~~-------- 766 (929)
|+...+... . .. .. .|...-..|.++|...++.+. .|.|.-++.++...
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 887654221 1 11 11 122223357788864444332 14566666554110
Q ss_pred ------ee-ccCCCeEEEEEe--CCEEEEEECCCcE-------EEEEccCCccce------------ecccccccccCCC
Q 002389 767 ------DI-YRSKGIKSMSVV--QGKIYIGCMDSSI-------QELAVSNNVERE------------IKAPFKSWRLQSK 818 (929)
Q Consensus 767 ------~l-~~~~~V~sla~s--dg~llsgs~Dg~I-------~iwDl~tg~~~~------------i~~~~~~~~~~~~ 818 (929)
.+ ........++++ +|.++++.....- .+.-+..+.... ...|...|. +..
T Consensus 190 ~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ 268 (352)
T 2ism_A 190 RGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGF 268 (352)
T ss_dssp TTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred CCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCC
Confidence 00 112335566776 4667665433221 122222222100 011212221 122
Q ss_pred CeEEEEEcCCceEEEEEecCCCeEEEEECCCCC----e--EEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 819 PINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP----Q--ISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 819 ~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~----~--i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
....+.+..+..+... ..++.|...+++... . ...+......+..+++.|||.+.++..
T Consensus 269 ap~G~~~~~G~l~v~~--~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAFFRGDLYVAG--LRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEEETTEEEEEE--TTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCEEEEEE--CCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 3445566554444332 345677776654332 1 112212235788999999998776654
No 329
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.90 E-value=4.3 Score=48.42 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=135.3
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeEEEEEEeccCCC-eEEeccCC
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKLELIEVIATKEP-IRKLDTYG 744 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~~~~~~~~h~~~-V~s~s~~g 744 (929)
..+.|+.-++.+........+. .-..+..++|++.+..|+ +-..++.|..+++...........+...+ -.++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 5678899999876432222222 234678999999777755 55567889999987654332222222222 23566666
Q ss_pred CEEEEEe-cCCeEEEEeCCCcee-eec--cCCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCccceecccccccccC
Q 002389 745 KTIFAST-QGHRMKVIDSSRTLK-DIY--RSKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREIKAPFKSWRLQ 816 (929)
Q Consensus 745 ~~L~sgs-~Dg~V~IWDl~~~~~-~l~--~~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i~~~~~~~~~~ 816 (929)
+.++.+. ..+.|.+.++++... .+. .......+++. +|.++.... .+.|...++.......+. ..
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-------~~ 164 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-------PN 164 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-------CS
T ss_pred CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-------CC
Confidence 6666654 457899999875432 222 23457788886 678776653 467777777654332221 12
Q ss_pred CCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEE
Q 002389 817 SKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVG 896 (929)
Q Consensus 817 ~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~ 896 (929)
......+++.++...+.-.....+.|..+|+++... ..+........++++.. +..+++-...+.|...|..+|+...
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 345677888764333222233567899999876544 33333444566888865 4455555567899999987776655
Q ss_pred EEe
Q 002389 897 RIS 899 (929)
Q Consensus 897 tl~ 899 (929)
.+.
T Consensus 243 ~l~ 245 (628)
T 4a0p_A 243 IIQ 245 (628)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 330
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.87 E-value=2.6 Score=45.65 Aligned_cols=211 Identities=9% Similarity=0.001 Sum_probs=116.7
Q ss_pred CCeEEEEEccCCeE-EEEEEeccCCCe-EEeccCCCEEEEEe-cCCeEEEEeCCCce--ee-ec-cCCCeEEEEEe--CC
Q 002389 712 DKTIGVWQMVQRKL-ELIEVIATKEPI-RKLDTYGKTIFAST-QGHRMKVIDSSRTL--KD-IY-RSKGIKSMSVV--QG 782 (929)
Q Consensus 712 DgtIrIWDl~tg~~-~~~~~~~h~~~V-~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~--~~-l~-~~~~V~sla~s--dg 782 (929)
...|+..|+..+.. ......+...++ ..+.+.++.++.+. .++.|..++.++.. .. .. .-.....+++. ++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 46788888876531 111111111111 23455455665554 45688888877432 11 11 12345667776 67
Q ss_pred EEEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC-ceEEEEEecCCCeEEEEECCCCCeEEEecCCC
Q 002389 783 KIYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD-WLYSASSSVEGSNIKEWRRHRKPQISIAPEKG 860 (929)
Q Consensus 783 ~llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d-~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~ 860 (929)
.++.. ...+.|.+++........+. .........+++.|. +.+..+-....+.|...+++...........-
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l 165 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLF------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 165 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEE------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC
Confidence 76554 45678999988754322221 123445678888864 33222221134688888887655433333334
Q ss_pred CCeEEEEEecCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCC-CCeEEEEEcCCE-EEEEECCCcEEEeec
Q 002389 861 TTIQAMAVVEDFIYLNY-NSSASSLQIWLRGTQQKVGRISAG-SKITSLLTANDI-VLCGTETGLIKGWIP 928 (929)
Q Consensus 861 ~~V~slafSpdg~~LaS-gS~DG~I~IWdl~sg~~i~tl~~h-~~Vtsvs~dg~~-LaSgs~DG~I~IWdi 928 (929)
...+.++++|++..|.. -+..+.|..+|+........+... ....+++.+++. +++-...+.|..++.
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence 56789999996665544 446788999998643332222222 336667766554 445445567776654
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.79 E-value=5.1 Score=48.46 Aligned_cols=267 Identities=12% Similarity=0.034 Sum_probs=150.2
Q ss_pred CCCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEeccC----CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC
Q 002389 649 SGAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH----RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQR 723 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH----~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg 723 (929)
...|.++... ++.|..|+.+| +..+|..+++.... ..... ...|.++...+++..|..|+. +-+..+|..++
T Consensus 145 ~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 3568888887 66666676654 77888877643211 11111 234888888777776555654 45788898777
Q ss_pred eEEEEEEeccCCCeEEeccC-CCEEEEEecCCeEEEEeCCC-ceeeec---------cCCCeEEEEEe-CCEEEEEECCC
Q 002389 724 KLELIEVIATKEPIRKLDTY-GKTIFASTQGHRMKVIDSSR-TLKDIY---------RSKGIKSMSVV-QGKIYIGCMDS 791 (929)
Q Consensus 724 ~~~~~~~~~h~~~V~s~s~~-g~~L~sgs~Dg~V~IWDl~~-~~~~l~---------~~~~V~sla~s-dg~llsgs~Dg 791 (929)
+....... ....|.++..+ ...+..|+. +.+.+++... ....+. ....|.++... +|.+..|+..|
T Consensus 222 ~~~~~~~l-~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G 299 (758)
T 3ott_A 222 QIKQTEAF-HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG 299 (758)
T ss_dssp EEEEEEEE-EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred eEEeccCC-CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence 64322211 22346666543 445666664 5688888763 222221 12348888776 78899998776
Q ss_pred cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC--eEEEec-------CCCCC
Q 002389 792 SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP--QISIAP-------EKGTT 862 (929)
Q Consensus 792 ~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~--~i~~l~-------~h~~~ 862 (929)
+.++.. .............-......|.++....++..-++. .+ -+..++..++. ....+. -....
T Consensus 300 -l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt--~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (758)
T 3ott_A 300 -ISLSRY-NSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG--AN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNR 374 (758)
T ss_dssp -EEEECC-CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE--TT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSC
T ss_pred -cccccc-CCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee--CC-cceeecccccccceeEEeccCCcCCCCCCCc
Confidence 544432 111111100000001123467777776666555543 23 46667655431 111121 01246
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEE--eC-----CCCeEEEEEcC-CEEEEEECCCcEEEee
Q 002389 863 IQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRI--SA-----GSKITSLLTAN-DIVLCGTETGLIKGWI 927 (929)
Q Consensus 863 V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl--~~-----h~~Vtsvs~dg-~~LaSgs~DG~I~IWd 927 (929)
|.++.-.++|...+. + ++-+..||..+++...-. .. ...|.++..+. ..|..|+..+-+..++
T Consensus 375 v~~i~~d~~g~lWig-t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 375 IRHIYEDKEQQLWIA-T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVD 445 (758)
T ss_dssp EEEEEECTTSCEEEE-E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEE
T ss_pred eEEEEECCCCCEEEE-e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEc
Confidence 888888888876554 4 457999998877543221 11 13488888773 4677788765566665
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.78 E-value=0.75 Score=48.83 Aligned_cols=218 Identities=6% Similarity=-0.000 Sum_probs=112.2
Q ss_pred EEEEEeC--CCeEEEEEccCCeEEEEEEecc-CCCeEEeccCCCEEEEEecC----CeEEEEeCCCce-eeec---cCCC
Q 002389 705 SLLSGSA--DKTIGVWQMVQRKLELIEVIAT-KEPIRKLDTYGKTIFASTQG----HRMKVIDSSRTL-KDIY---RSKG 773 (929)
Q Consensus 705 ~LaSgs~--DgtIrIWDl~tg~~~~~~~~~h-~~~V~s~s~~g~~L~sgs~D----g~V~IWDl~~~~-~~l~---~~~~ 773 (929)
.++.||. ...+.+||..+++......... .........++..++.|+.+ +.+.+||..... ..+. ....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 3455554 3578899998887543321111 11112233455566666644 578888877432 1111 1111
Q ss_pred eEEEEEeCCEEE-EEECC------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC-------C
Q 002389 774 IKSMSVVQGKIY-IGCMD------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE-------G 839 (929)
Q Consensus 774 V~sla~sdg~ll-sgs~D------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d-------D 839 (929)
-.++...+++++ .|+.+ ..+.+||..+++-..+... . ....-.+.....+.++++.+... -
T Consensus 94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM----L-TQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC----S-SCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC----c-CCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 223334477744 46544 4688999888654443211 0 01112233344566666544321 2
Q ss_pred CeEEEEECCCCCeEEEecCCCCCe-EEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEE--EeCC-CCeEEEEEc
Q 002389 840 SNIKEWRRHRKPQISIAPEKGTTI-QAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQKVGR--ISAG-SKITSLLTA 910 (929)
Q Consensus 840 gtI~IWDl~~~~~i~~l~~h~~~V-~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~~i~t--l~~h-~~Vtsvs~d 910 (929)
..+.+||..+..-...-....... .+++. -++++++.|+.+ ..+.+||..+.+.... +... ....++..+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 247 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVG 247 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEET
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEEC
Confidence 458899988775433221111111 12222 266777777654 4688999887654322 1111 113445567
Q ss_pred CCEEEEEECC-----CcEEEeec
Q 002389 911 NDIVLCGTET-----GLIKGWIP 928 (929)
Q Consensus 911 g~~LaSgs~D-----G~I~IWdi 928 (929)
+++++.||.+ ..+.+||+
T Consensus 248 ~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 248 SIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TEEEEEECBCSSSBCCEEEEEET
T ss_pred CEEEEEeCcCCCeeeeeEEEEcC
Confidence 8888888865 45677764
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.67 E-value=1.3 Score=47.33 Aligned_cols=222 Identities=8% Similarity=0.020 Sum_probs=111.1
Q ss_pred eEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC----CC-------eEEEEEccCCeEEEEEEecc-CCCe
Q 002389 670 SIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----DK-------TIGVWQMVQRKLELIEVIAT-KEPI 737 (929)
Q Consensus 670 tIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~----Dg-------tIrIWDl~tg~~~~~~~~~h-~~~V 737 (929)
.+..||..+.+... ..+......-.......++..++.|+. ++ .+.+||..+++......... ....
T Consensus 25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 37899999887543 223221112222233456777777773 12 27788888876543221111 1111
Q ss_pred EEeccCCCEEEEEecC-------CeEEEEeCCCceee-ecc---CCCeEEEEEeCCEEEE-EEC------CCcEEEEEcc
Q 002389 738 RKLDTYGKTIFASTQG-------HRMKVIDSSRTLKD-IYR---SKGIKSMSVVQGKIYI-GCM------DSSIQELAVS 799 (929)
Q Consensus 738 ~s~s~~g~~L~sgs~D-------g~V~IWDl~~~~~~-l~~---~~~V~sla~sdg~lls-gs~------Dg~I~iwDl~ 799 (929)
.....++...+.|+.+ ..+.+||.....-. ... ...-.++...++++++ |+. -..+.+||..
T Consensus 104 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 1223355566666643 35778887743222 111 1111233335777554 443 2458999998
Q ss_pred CCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC---CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 002389 800 NNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG---SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 800 tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD---gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~La 876 (929)
+++-..+... . ....-.+.....+.++++.+...+ ..+.+||..+..-...-..........+...++++++
T Consensus 184 ~~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v 258 (318)
T 2woz_A 184 KGDWKDLAPM----K-TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYA 258 (318)
T ss_dssp TTEEEEECCC----S-SCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCEEEECCCC----C-CCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEE
Confidence 8665444211 0 111122344456667766544222 3577899887764332111111111112223567777
Q ss_pred EEeCC--------------CcEEEEECCCCcEEEE
Q 002389 877 YNSSA--------------SSLQIWLRGTQQKVGR 897 (929)
Q Consensus 877 SgS~D--------------G~I~IWdl~sg~~i~t 897 (929)
.|+.+ ..+.+||..+.+-...
T Consensus 259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp ECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 77653 4578888887665433
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.60 E-value=1.1 Score=47.33 Aligned_cols=219 Identities=10% Similarity=0.117 Sum_probs=109.7
Q ss_pred CEEEEEeCC----CeEEEEEccCCeEEEEEEeccC-CCeEEeccCCCEEEEEecC-----CeEEEEeCCCce-eeec---
Q 002389 704 ESLLSGSAD----KTIGVWQMVQRKLELIEVIATK-EPIRKLDTYGKTIFASTQG-----HRMKVIDSSRTL-KDIY--- 769 (929)
Q Consensus 704 ~~LaSgs~D----gtIrIWDl~tg~~~~~~~~~h~-~~V~s~s~~g~~L~sgs~D-----g~V~IWDl~~~~-~~l~--- 769 (929)
..++.|+.+ ..+..+|..+++.......... ........++..++.|+.+ +.+.+||..... ..+.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p 96 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR 96 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC
Confidence 345555543 3578889888765433211111 1111223345555566544 357888876322 1111
Q ss_pred cCCCeEEEEEeCCE-EEEEECCC-----cEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC-----
Q 002389 770 RSKGIKSMSVVQGK-IYIGCMDS-----SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE----- 838 (929)
Q Consensus 770 ~~~~V~sla~sdg~-llsgs~Dg-----~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d----- 838 (929)
....-.+++..+++ ++.|+.++ .+.+||..+++-..+... . ....-.+.....+.++++.+...
T Consensus 97 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 97 DRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM----N-TRRSSVGVGVVGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp SCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC----S-SCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred ccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC----C-CcccCceEEEECCEEEEEeCCCCCCCcc
Confidence 11112233344777 44566543 577888887655443211 0 11112233444566666543211
Q ss_pred CCeEEEEECCCCCeEEEecCCCCC-eEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCC---CeEEEEE
Q 002389 839 GSNIKEWRRHRKPQISIAPEKGTT-IQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQKVGRISAGS---KITSLLT 909 (929)
Q Consensus 839 DgtI~IWDl~~~~~i~~l~~h~~~-V~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~~i~tl~~h~---~Vtsvs~ 909 (929)
-..+..||..+..-...-...... -.+++ .-++++++.|+.+ +.+.+||..+.+....-.... .-..+..
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 250 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV 250 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE
Confidence 135889998876543321111111 11222 2367777777754 468899988765432211111 1233456
Q ss_pred cCCEEEEEECCC-----cEEEeec
Q 002389 910 ANDIVLCGTETG-----LIKGWIP 928 (929)
Q Consensus 910 dg~~LaSgs~DG-----~I~IWdi 928 (929)
++++++.||.++ .+.+||+
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCcCCCcccccEEEEcC
Confidence 788888888664 3777775
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.50 E-value=1.2 Score=47.59 Aligned_cols=208 Identities=8% Similarity=0.014 Sum_probs=105.0
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEEEec--cCCCeEEeccCCCEEEEEec-----C------CeEEEEeCCCce-eeecc-
Q 002389 706 LLSGSADKTIGVWQMVQRKLELIEVIA--TKEPIRKLDTYGKTIFASTQ-----G------HRMKVIDSSRTL-KDIYR- 770 (929)
Q Consensus 706 LaSgs~DgtIrIWDl~tg~~~~~~~~~--h~~~V~s~s~~g~~L~sgs~-----D------g~V~IWDl~~~~-~~l~~- 770 (929)
++.|+ ..+.+||..+++........ ..........++..++.|+. . ..+..||..... ..+..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44455 57899999998865422211 11112233456666677763 1 126778876322 22211
Q ss_pred --CCCeEEEEEeCCEEE-EEECC--------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC
Q 002389 771 --SKGIKSMSVVQGKIY-IGCMD--------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG 839 (929)
Q Consensus 771 --~~~V~sla~sdg~ll-sgs~D--------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD 839 (929)
...-.+++..+++++ .|+.+ ..+.+||..+++-..+... .. ...-.+.....+.++++.+..++
T Consensus 86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----p~-~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL----PY-VVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC----SS-CCBSCEEEEETTEEEEECCBCTT
T ss_pred CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC----CC-cccceeEEEECCEEEEEeCCCCC
Confidence 111123334477744 45532 4588999988654433211 00 11122334455666665543111
Q ss_pred ----CeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCcEEEEEeCCCC---eEEE
Q 002389 840 ----SNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS-----SLQIWLRGTQQKVGRISAGSK---ITSL 907 (929)
Q Consensus 840 ----gtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG-----~I~IWdl~sg~~i~tl~~h~~---Vtsv 907 (929)
..+.+||..+..-...-..........+..-+++.++.|+.++ .+.+||..+.+....-....+ ...+
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 3688999887653322111111111112223677777777654 588899887654322111111 3345
Q ss_pred EEcCCEEEEEECC
Q 002389 908 LTANDIVLCGTET 920 (929)
Q Consensus 908 s~dg~~LaSgs~D 920 (929)
..++++++.||.+
T Consensus 241 ~~~~~l~v~GG~~ 253 (315)
T 4asc_A 241 SLVGTLYAIGGFA 253 (315)
T ss_dssp EETTEEEEEEEEE
T ss_pred EECCEEEEECCcc
Confidence 5678888888764
No 336
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.35 E-value=1.2 Score=47.07 Aligned_cols=222 Identities=11% Similarity=0.128 Sum_probs=112.6
Q ss_pred CCCEEEEEe-CC-----CeEEEEEccCCeEEEEEEecc-CCCeEEeccCCCEEEEEecC-----CeEEEEeCCCce----
Q 002389 702 PGESLLSGS-AD-----KTIGVWQMVQRKLELIEVIAT-KEPIRKLDTYGKTIFASTQG-----HRMKVIDSSRTL---- 765 (929)
Q Consensus 702 dg~~LaSgs-~D-----gtIrIWDl~tg~~~~~~~~~h-~~~V~s~s~~g~~L~sgs~D-----g~V~IWDl~~~~---- 765 (929)
++..++.|+ .+ ..+.++|..+++......... .........++..++.|+.+ +.+.+||.....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 344455555 32 368889988876543221111 11112233455566666654 468889876432
Q ss_pred eeecc---CCCeEEEEEeCCEEEE-EECC-----CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe
Q 002389 766 KDIYR---SKGIKSMSVVQGKIYI-GCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS 836 (929)
Q Consensus 766 ~~l~~---~~~V~sla~sdg~lls-gs~D-----g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S 836 (929)
..+.. ...-.++...+++++. |+.+ ..+.+||..+++-..+... . ....-.+.....+.++++.+.
T Consensus 94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~----p-~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM----Q-TAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----S-SCCBSCEEEEETTEEEEECCB
T ss_pred EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC----C-CCcccceEEEECCEEEEECCC
Confidence 22221 1112233344777554 5433 3688899887654443211 0 111112333345555655432
Q ss_pred cC---CCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCC---CeE
Q 002389 837 VE---GSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQKVGRISAGS---KIT 905 (929)
Q Consensus 837 ~d---DgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~~i~tl~~h~---~Vt 905 (929)
.. -..+..||..++.-...-..........+..-+++.++.|+.+ ..+.+||..+.+....-.... ...
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 11 1468899988775433221111111111222367777777754 468999988765432211111 133
Q ss_pred EEEEcCCEEEEEECCC-----cEEEeec
Q 002389 906 SLLTANDIVLCGTETG-----LIKGWIP 928 (929)
Q Consensus 906 svs~dg~~LaSgs~DG-----~I~IWdi 928 (929)
.+..++++++.||.++ .|.+||+
T Consensus 249 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 249 ATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred EEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 4556787888887663 4666664
No 337
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.34 E-value=7.7 Score=47.54 Aligned_cols=207 Identities=11% Similarity=0.025 Sum_probs=119.0
Q ss_pred CCeEEEEEccCCeEEEEEEeccCCCeE--EeccCCCEEEEEe-cCCeEEEEeCCCc-----eeeec--cCCCeEEEEEe-
Q 002389 712 DKTIGVWQMVQRKLELIEVIATKEPIR--KLDTYGKTIFAST-QGHRMKVIDSSRT-----LKDIY--RSKGIKSMSVV- 780 (929)
Q Consensus 712 DgtIrIWDl~tg~~~~~~~~~h~~~V~--s~s~~g~~L~sgs-~Dg~V~IWDl~~~-----~~~l~--~~~~V~sla~s- 780 (929)
...|+..++..+.... ..... ..+. .+.+.+..|+.+. ..+.|+.+++.+. ...+. .......+++.
T Consensus 403 ~~~Ir~i~l~~~~~~~-l~~~~-~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS-LIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp BSSEEEECTTSCCCEE-EECSC-SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccceeEeeccCCccee-eecCC-CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 4567777776554322 22222 2233 3555556666554 4567888888742 12222 23446677876
Q ss_pred -CCEEEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCCCeEEEe
Q 002389 781 -QGKIYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRKPQISIA 856 (929)
Q Consensus 781 -dg~llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~~~i~~l 856 (929)
.+.|+.. ...+.|.+.++.......+. .........|++.+. .+|...++ ..+.|...++++.......
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~------~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEE------ECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEE------eCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceEEEE
Confidence 5576654 45678999998764433321 122345778888875 33433332 2367889998877655555
Q ss_pred cCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCcEEEEEeCC---CCeEEEEEcCCEEEEEE-CCCcEEEee
Q 002389 857 PEKGTTIQAMAVVEDFIYLNYN-SSASSLQIWLRGTQQKVGRISAG---SKITSLLTANDIVLCGT-ETGLIKGWI 927 (929)
Q Consensus 857 ~~h~~~V~slafSpdg~~LaSg-S~DG~I~IWdl~sg~~i~tl~~h---~~Vtsvs~dg~~LaSgs-~DG~I~IWd 927 (929)
...-...+.|++++.+..|..+ ...+.|...++........+..+ ....+|+..++.|+.+. ..+.|...+
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 4445678999999866666554 45678999998655444444432 22556776655555444 445565443
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.31 E-value=0.69 Score=49.38 Aligned_cols=228 Identities=12% Similarity=0.113 Sum_probs=113.2
Q ss_pred CCEEEEEECC----CeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeC----C-----CeEEEEEccCCeE
Q 002389 659 KGLLCSGFSD----GSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSA----D-----KTIGVWQMVQRKL 725 (929)
Q Consensus 659 ~~~LaSGs~D----GtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~----D-----gtIrIWDl~tg~~ 725 (929)
+..++.|+.+ ..+.+||..+.+...+..+......-..+.+ ++..++.|+. + ..+.+||..+++.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 3456666632 4688999988765433222211111122222 5666666665 2 4588899888765
Q ss_pred EEEEEecc-CCCeEEeccCCCEEEEEecC-----CeEEEEeCCCceee-e---ccCCCeEEEEEeCCEEE-EEECC----
Q 002389 726 ELIEVIAT-KEPIRKLDTYGKTIFASTQG-----HRMKVIDSSRTLKD-I---YRSKGIKSMSVVQGKIY-IGCMD---- 790 (929)
Q Consensus 726 ~~~~~~~h-~~~V~s~s~~g~~L~sgs~D-----g~V~IWDl~~~~~~-l---~~~~~V~sla~sdg~ll-sgs~D---- 790 (929)
........ .........++..++.|+.+ ..+.+||.....-. . .....-.+....+++++ .|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR 182 (308)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCc
Confidence 43321111 11111223355555555433 36788887643211 1 11111223333477754 45543
Q ss_pred -CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecC---CCeEEEEECCCCCeEEEecCCCCC-eEE
Q 002389 791 -SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVE---GSNIKEWRRHRKPQISIAPEKGTT-IQA 865 (929)
Q Consensus 791 -g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~d---DgtI~IWDl~~~~~i~~l~~h~~~-V~s 865 (929)
..+..||..+++-..+... .. ...-.+.....+.++++.+... -..+.+||+.+..-.......... -.+
T Consensus 183 ~~~~~~yd~~~~~W~~~~~~----p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 257 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMITAM----NT-IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 257 (308)
T ss_dssp CCCEEEEETTTTEEEECCCC----SS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred CceEEEEeCCCCeEeeCCCC----CC-ccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE
Confidence 4688999887654433211 00 1112233444566666543311 146899998877543321111111 112
Q ss_pred EEEecCCCEEEEEeCC-----CcEEEEECCCCcE
Q 002389 866 MAVVEDFIYLNYNSSA-----SSLQIWLRGTQQK 894 (929)
Q Consensus 866 lafSpdg~~LaSgS~D-----G~I~IWdl~sg~~ 894 (929)
++. -++++++.|+.+ ..+.+||..+.+.
T Consensus 258 ~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 258 ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 222 267777777744 4577888876554
No 339
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.28 E-value=0.36 Score=48.45 Aligned_cols=128 Identities=16% Similarity=0.031 Sum_probs=71.1
Q ss_pred hhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhH
Q 002389 289 PRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAI 368 (929)
Q Consensus 289 ~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~ 368 (929)
+..+..|+..++..+.+-|..++..|-..-. .-....++++|...+...|..|+.-|..+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--------- 139 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI--------- 139 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------
Confidence 3445555555666666666666665543311 11223445555555555555555555443
Q ss_pred HHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHH
Q 002389 369 DLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 448 (929)
Q Consensus 369 ~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l 448 (929)
.. -..+-.|+.+|+...++-+--++.-|-++. .+++++.|.+.|+. +++.++..|+++|
T Consensus 140 ------~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d-~~~~vr~~A~~aL 198 (211)
T 3ltm_A 140 ------GD---ERAVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAET-GTGFARKVAVNYL 198 (211)
T ss_dssp ------CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHH-CCHHHHHHHHHHH
T ss_pred ------CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 11 123444555555555555555555555552 27899999999875 4788999999999
Q ss_pred HhcCccccc
Q 002389 449 SNIGGTFSW 457 (929)
Q Consensus 449 ~~l~g~fs~ 457 (929)
..+++....
T Consensus 199 ~~~~~~~~~ 207 (211)
T 3ltm_A 199 ETHKSFNHH 207 (211)
T ss_dssp HC-------
T ss_pred HhcCCCCCC
Confidence 999887654
No 340
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.99 E-value=5.2 Score=43.69 Aligned_cols=243 Identities=9% Similarity=0.030 Sum_probs=140.6
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCE
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 746 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~ 746 (929)
.+..|.|-|+..+.....+.+ .-. +.-.+|..+.++--. ..++.|+|+++..... .....++|.-|.+-...
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi-~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klk--s~~~~e~VvfWkWis~~ 118 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPI-SAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTDDVTFWKWISLN 118 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEEC-CCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEE--EEECSSCEEEEEECSSS
T ss_pred CCCEEEEEECCCCCCcccccc-ccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhc--ceecCCccEEEEecCCC
Confidence 334788999988654322222 222 234588888776555 7899999999875433 33345678877765544
Q ss_pred EEEEecCCeEEEEeCCC---ceeeecc-----CCCeEEEEEe-CCE--EEEEE------CCCcEEEEEccCCccceeccc
Q 002389 747 IFASTQGHRMKVIDSSR---TLKDIYR-----SKGIKSMSVV-QGK--IYIGC------MDSSIQELAVSNNVEREIKAP 809 (929)
Q Consensus 747 L~sgs~Dg~V~IWDl~~---~~~~l~~-----~~~V~sla~s-dg~--llsgs------~Dg~I~iwDl~tg~~~~i~~~ 809 (929)
.+.--.+..|+.|++.+ ..+.+.. +..|.....+ +.+ +++|- -.|.+.+|....+....+
T Consensus 119 ~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i--- 195 (365)
T 2xzh_A 119 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI--- 195 (365)
T ss_dssp EEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE---
T ss_pred eEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee---
Confidence 44444467899999873 2222222 2224444444 444 33332 247788888877544333
Q ss_pred ccccccCCCCeEEEEEcC--CceEEEEE---ecCCCeEEEEECCCC---C------eEEEecC---CCCCeEEEEEecCC
Q 002389 810 FKSWRLQSKPINSLVVYK--DWLYSASS---SVEGSNIKEWRRHRK---P------QISIAPE---KGTTIQAMAVVEDF 872 (929)
Q Consensus 810 ~~~~~~~~~~I~sl~~~~--d~i~~~s~---S~dDgtI~IWDl~~~---~------~i~~l~~---h~~~V~slafSpdg 872 (929)
.+|......+.... ....+.++ .+.++.+++.++... . .+..+.. ..+.-.++..|+..
T Consensus 196 ----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky 271 (365)
T 2xzh_A 196 ----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH 271 (365)
T ss_dssp ----CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT
T ss_pred ----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC
Confidence 44544443333321 12222222 234568899887432 1 1111221 24456678888888
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcEE
Q 002389 873 IYLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLIK 924 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I~ 924 (929)
..+..-+.-|.|++||+++|.+++.-+-.+ .|..-+++ ..-++.....|.|.
T Consensus 272 gviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 272 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred CEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 888888899999999999999988776543 34433332 33455555666553
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.86 E-value=6.8 Score=44.39 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=140.0
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEE
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTI 747 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L 747 (929)
+..|.|-|+..+.....+.+. -. +.-.+|..+.++--. ..++.|+|+++..... .....++|.-|.+-....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~-Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klk--s~~~~e~VvfWkWis~~~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS-AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK--AHTMTDDVTFWKWISLNT 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC-CS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEE--EEECSSCCCEEEEEETTE
T ss_pred CCeEEEEECCCCCcceecccc-cc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhc--ceecCCCceEEEecCCCe
Confidence 347888999876543222222 12 344688887766555 7899999999876433 333455666665433333
Q ss_pred EEEecCCeEEEEeCCC---ceeeecc-----CCCeEEEEEe-CCE--EEEEE------CCCcEEEEEccCCccceecccc
Q 002389 748 FASTQGHRMKVIDSSR---TLKDIYR-----SKGIKSMSVV-QGK--IYIGC------MDSSIQELAVSNNVEREIKAPF 810 (929)
Q Consensus 748 ~sgs~Dg~V~IWDl~~---~~~~l~~-----~~~V~sla~s-dg~--llsgs------~Dg~I~iwDl~tg~~~~i~~~~ 810 (929)
+.--.+..|+-|++.+ ..+.+.. +..|.....+ +.+ +++|- -.|.+.+|....+....+
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---- 194 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---- 194 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE----
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh----
Confidence 3333467899999863 2222222 2224444444 444 33332 247788888877544333
Q ss_pred cccccCCCCeEEEEEcCC--ceEEEEEe---cCCCeEEEEECCCC----C-----eEEEec---CCCCCeEEEEEecCCC
Q 002389 811 KSWRLQSKPINSLVVYKD--WLYSASSS---VEGSNIKEWRRHRK----P-----QISIAP---EKGTTIQAMAVVEDFI 873 (929)
Q Consensus 811 ~~~~~~~~~I~sl~~~~d--~i~~~s~S---~dDgtI~IWDl~~~----~-----~i~~l~---~h~~~V~slafSpdg~ 873 (929)
.+|.....++....+ .....++. +.++.+++.++... . .+..+. ...+.-.++..|+...
T Consensus 195 ---eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg 271 (494)
T 1bpo_A 195 ---EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (494)
T ss_dssp ---CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT
T ss_pred ---eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC
Confidence 555555544444322 22233333 24578999997432 1 111111 1234566888899888
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCC-CeEEEEEc--CCEEEEEECCCcE
Q 002389 874 YLNYNSSASSLQIWLRGTQQKVGRISAGS-KITSLLTA--NDIVLCGTETGLI 923 (929)
Q Consensus 874 ~LaSgS~DG~I~IWdl~sg~~i~tl~~h~-~Vtsvs~d--g~~LaSgs~DG~I 923 (929)
.+..-+.-|.|++||+++|.+++.-+-.+ .|..-+++ ..-++.....|.|
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 88888899999999999999988776543 34433333 3345555566654
No 342
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.67 E-value=0.57 Score=46.53 Aligned_cols=173 Identities=23% Similarity=0.206 Sum_probs=109.3
Q ss_pred hhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhH
Q 002389 289 PRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAI 368 (929)
Q Consensus 289 ~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~ 368 (929)
++....++..++.++.+.|..|+..|-..-. .-...+++++|...+...|..|+..|.++
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~--------- 72 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQI--------- 72 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh---------
Confidence 5667788888889999999999888874321 12345677777777777777776666544
Q ss_pred HHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHH
Q 002389 369 DLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 448 (929)
Q Consensus 369 ~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l 448 (929)
.. -...-.|+-.|+...++-|-.++..|-++. + +++++.|+++|.. .++.++..|+++|
T Consensus 73 ------~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~--------~~~~~~L~~~l~d-~~~~vr~~a~~aL 131 (201)
T 3ltj_A 73 ------GD---ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D--------ERAVEPLIKALKD-EDWFVRIAAAFAL 131 (201)
T ss_dssp ------CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C--------GGGHHHHHHHTTC-SSHHHHHHHHHHH
T ss_pred ------CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 11 133445555667766777777777665542 2 4689999998854 4788899999999
Q ss_pred HhcCccccccCchhhHHHHHHHhCCCCchhhhhhccCCcccchhhhhchhhhhH-HHHHHHHhcCh-hHHHHHHhhhhcC
Q 002389 449 SNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSS-KIAKSIIEIGK-PIYYALEKGLKSK 526 (929)
Q Consensus 449 ~~l~g~fs~sg~~~~~~~llk~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~l~~~g~-~~l~aL~~~l~s~ 526 (929)
-.+|. +-+...|++... ++ +.+-| .++.+|-..|. ..+.+|.+.+.++
T Consensus 132 ~~~~~-------~~~~~~L~~~l~--d~---------------------~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 132 GEIGD-------ERAVEPLIKALK--DE---------------------DGWVRQSAADALGEIGGERVRAAMEKLAETG 181 (201)
T ss_dssp HHHTC-------GGGHHHHHHHTT--CS---------------------SHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHhCC-------HHHHHHHHHHHc--CC---------------------CHHHHHHHHHHHHHhCchhHHHHHHHHHhCC
Confidence 88753 333334443321 11 11222 23444445564 5777777777776
Q ss_pred Cccccc
Q 002389 527 TKSVCR 532 (929)
Q Consensus 527 ~~~l~~ 532 (929)
.+.+..
T Consensus 182 ~~~vr~ 187 (201)
T 3ltj_A 182 TGFARK 187 (201)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 655443
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.59 E-value=3 Score=45.17 Aligned_cols=232 Identities=9% Similarity=-0.055 Sum_probs=110.9
Q ss_pred CC-EEEEEEC-CCeEEEEECCC--CCeeEEEEec-cCCCcEEEEEEcCCCCEEEEEeC-C---------CeEEEEEccCC
Q 002389 659 KG-LLCSGFS-DGSIKMWDIKK--QSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSA-D---------KTIGVWQMVQR 723 (929)
Q Consensus 659 ~~-~LaSGs~-DGtIrIWD~~~--~~~~~i~~l~-gH~~~Vtslafspdg~~LaSgs~-D---------gtIrIWDl~tg 723 (929)
++ .++.|+. ...+.+||..+ .+...+..+. .....-.++.+ ++..++.||. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 44 4455543 45788899874 4443333332 11111222222 5666666665 2 46889999887
Q ss_pred eEEEEEEec--cCCCeEEeccCCCEEEEEecC---------------------------------------CeEEEEeCC
Q 002389 724 KLELIEVIA--TKEPIRKLDTYGKTIFASTQG---------------------------------------HRMKVIDSS 762 (929)
Q Consensus 724 ~~~~~~~~~--h~~~V~s~s~~g~~L~sgs~D---------------------------------------g~V~IWDl~ 762 (929)
+........ ......+...++..++.|+.+ +.+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 754332221 111122334566666667644 578899987
Q ss_pred Cceee----eccCCCe-EEEEEeCCEEEE-EEC------CCcEEEEEc--cCCccceecccccccccCCCCeEEEEEcCC
Q 002389 763 RTLKD----IYRSKGI-KSMSVVQGKIYI-GCM------DSSIQELAV--SNNVEREIKAPFKSWRLQSKPINSLVVYKD 828 (929)
Q Consensus 763 ~~~~~----l~~~~~V-~sla~sdg~lls-gs~------Dg~I~iwDl--~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d 828 (929)
...-. +.....- .+++..++++++ |+. ...+..||+ .++.-..+... . ......-.++....+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~--~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-S--SPDGVAGGFAGISND 253 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-S--TTTCCBSCEEEEETT
T ss_pred CCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-C--CCcccccceEEEECC
Confidence 43221 1111122 344555777544 442 345777876 44433322110 0 000111223445566
Q ss_pred ceEEEEEecCC--------------------CeEEEEECCCCCeEE--EecCCCCCeEEEEEecCCCEEEEEeCCC----
Q 002389 829 WLYSASSSVEG--------------------SNIKEWRRHRKPQIS--IAPEKGTTIQAMAVVEDFIYLNYNSSAS---- 882 (929)
Q Consensus 829 ~i~~~s~S~dD--------------------gtI~IWDl~~~~~i~--~l~~h~~~V~slafSpdg~~LaSgS~DG---- 882 (929)
.++++.+...+ ..+.+||..+..-.. .+...... ..+...+++.++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKA 331 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCE
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCE
Confidence 66665542111 257789987665322 22222222 122334677888888553
Q ss_pred --cEEEEECCCCcEEEE
Q 002389 883 --SLQIWLRGTQQKVGR 897 (929)
Q Consensus 883 --~I~IWdl~sg~~i~t 897 (929)
.|.++++++++.+..
T Consensus 332 ~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEEEC-CCSCEEE
T ss_pred eeeEEEEEEcCcEeEee
Confidence 355567777766543
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.58 E-value=3.2 Score=44.23 Aligned_cols=201 Identities=9% Similarity=0.045 Sum_probs=98.9
Q ss_pred eEEEEEccCCeEEEEEEec-cCCCeE-EeccCCCEEEEEec----CC-------eEEEEeCCCce-eeec---cCCCeEE
Q 002389 714 TIGVWQMVQRKLELIEVIA-TKEPIR-KLDTYGKTIFASTQ----GH-------RMKVIDSSRTL-KDIY---RSKGIKS 776 (929)
Q Consensus 714 tIrIWDl~tg~~~~~~~~~-h~~~V~-s~s~~g~~L~sgs~----Dg-------~V~IWDl~~~~-~~l~---~~~~V~s 776 (929)
.+..||..+++........ ....-. ....++..++.|+. ++ .+..||..... ..+. ....-.+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 4789999888765422221 111122 23456666666662 11 26778876322 1111 1112223
Q ss_pred EEEeCCE-EEEEECC-------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCC----CeEEE
Q 002389 777 MSVVQGK-IYIGCMD-------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEG----SNIKE 844 (929)
Q Consensus 777 la~sdg~-llsgs~D-------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dD----gtI~I 844 (929)
++..+++ ++.|+.+ ..+.+||..+++-..+..... ...-.+.....+.++++.+..++ +.+.+
T Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-----KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-----CEESCEEEEETTEEEEECCEESSSCBCCCEEE
T ss_pred eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-----cccccEEEEECCEEEEEcCCCCCCCccceEEE
Confidence 4444777 4446643 347888888765444321100 01112333355666665443221 35889
Q ss_pred EECCCCCeEEEecCCCCC-eEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEE--EEeCCC-CeEEEEEcCCEEE
Q 002389 845 WRRHRKPQISIAPEKGTT-IQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQKVG--RISAGS-KITSLLTANDIVL 915 (929)
Q Consensus 845 WDl~~~~~i~~l~~h~~~-V~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~~i~--tl~~h~-~Vtsvs~dg~~La 915 (929)
||..+..-...-...... -.+++. -+++.++.|+.+ ..+.+||..+.+... .+.... ....+..++++++
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v 258 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYA 258 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred EcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEE
Confidence 998877543322111111 112222 366777777643 357788987765432 221111 1233556777778
Q ss_pred EEECC
Q 002389 916 CGTET 920 (929)
Q Consensus 916 Sgs~D 920 (929)
.||.+
T Consensus 259 ~GG~~ 263 (318)
T 2woz_A 259 IGGFA 263 (318)
T ss_dssp ECCBC
T ss_pred ECCee
Confidence 87764
No 345
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.57 E-value=1.6 Score=43.24 Aligned_cols=126 Identities=18% Similarity=0.071 Sum_probs=68.2
Q ss_pred hhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHH
Q 002389 290 RVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAID 369 (929)
Q Consensus 290 ~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~ 369 (929)
..+..|+..++..+.+-|..++..|-..-. .-....++++|...+...|..|+..|..+
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---------- 134 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI---------- 134 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------
Confidence 344455555555555556666555543211 11223344455555555555555444433
Q ss_pred HHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHH
Q 002389 370 LLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILS 449 (929)
Q Consensus 370 ~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~ 449 (929)
.+. ..+..|+.+|+...++-+--++.-|-++. .++|++.|.+.|... ++.++..|+++|-
T Consensus 135 -----~~~---~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-----------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 135 -----GDE---RAVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETG-TGFARKVAVNYLE 194 (201)
T ss_dssp -----TCG---GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred -----CCH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 111 22334444555544555555555554441 278999999999654 6888999999999
Q ss_pred hcCcccc
Q 002389 450 NIGGTFS 456 (929)
Q Consensus 450 ~l~g~fs 456 (929)
.+.++.|
T Consensus 195 ~l~~~~~ 201 (201)
T 3ltj_A 195 THKSLIS 201 (201)
T ss_dssp HCC----
T ss_pred HHHhhcC
Confidence 8887654
No 346
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=6.2 Score=45.58 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=126.7
Q ss_pred cEEEEEEcC-CCCEEEEEeC-CCeEEEEEccCCeEEEEEEecc--CCCeE--Ee-------ccCCCEEEEEecCC-----
Q 002389 693 AVTSFSLFE-PGESLLSGSA-DKTIGVWQMVQRKLELIEVIAT--KEPIR--KL-------DTYGKTIFASTQGH----- 754 (929)
Q Consensus 693 ~Vtslafsp-dg~~LaSgs~-DgtIrIWDl~tg~~~~~~~~~h--~~~V~--s~-------s~~g~~L~sgs~Dg----- 754 (929)
....|+|+| ++..|+.+.. .+.|++.|..++.+......+. ..... +| +++++.++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 4555655554 4678888988877544332221 11122 46 77888777776554
Q ss_pred --eEEEEeCCC--ce------eeeccCCCeEEEEEe--CCEEEEEE-CCCcEEEEEcc-------CCcc-ceeccc----
Q 002389 755 --RMKVIDSSR--TL------KDIYRSKGIKSMSVV--QGKIYIGC-MDSSIQELAVS-------NNVE-REIKAP---- 809 (929)
Q Consensus 755 --~V~IWDl~~--~~------~~l~~~~~V~sla~s--dg~llsgs-~Dg~I~iwDl~-------tg~~-~~i~~~---- 809 (929)
.|.+++... .. ..+........++++ ++.++.+. .++.|..+|+. ++.. ....+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 355665332 22 112122234455665 45666544 66779999987 4433 000000
Q ss_pred -cccc-ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC--CCCe--EEEecCC---C------------CCeE-EEE
Q 002389 810 -FKSW-RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH--RKPQ--ISIAPEK---G------------TTIQ-AMA 867 (929)
Q Consensus 810 -~~~~-~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~--~~~~--i~~l~~h---~------------~~V~-sla 867 (929)
.... .........++++|++.++.......+.|+.++.+ .+.+ ...+.+. . .... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 0001 11234457889998886433233356788886643 3321 0122111 1 1234 455
Q ss_pred Ee-------cCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------------------------CCeEEEEEcC---C
Q 002389 868 VV-------EDFIYLNYNSSASSLQIWLRGTQQKVGRISAG-------------------------SKITSLLTAN---D 912 (929)
Q Consensus 868 fS-------pdg~~LaSgS~DG~I~IWdl~sg~~i~tl~~h-------------------------~~Vtsvs~dg---~ 912 (929)
.. ++|.++++-...+.|+.++ .+| .+.++.+. .....|++++ .
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 54 5677777777788999998 456 44455321 1155677763 3
Q ss_pred EEEEEECCCcEEEeec
Q 002389 913 IVLCGTETGLIKGWIP 928 (929)
Q Consensus 913 ~LaSgs~DG~I~IWdi 928 (929)
+.++=+..++|+.+++
T Consensus 458 lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 458 FYVHDQVGHTIRTISM 473 (496)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCEEEEEEC
Confidence 4444455677887764
No 347
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.52 E-value=0.72 Score=46.14 Aligned_cols=176 Identities=22% Similarity=0.198 Sum_probs=111.0
Q ss_pred hhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhh
Q 002389 288 SPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSA 367 (929)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~ 367 (929)
.+..+..|+..++.++...|..++..|-..-. .-....++++|...+...|..|+..|.++-
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 47778888888888888889888888775321 123455677777777777777766665542
Q ss_pred HHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHH
Q 002389 368 IDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFI 447 (929)
Q Consensus 368 ~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~ 447 (929)
+ -...-.|+-.|+...++-+..++..|-++. + +++++.|++.|+. +++.++..|+++
T Consensus 79 --------~---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~--------~~~~~~L~~~l~d-~~~~vr~~a~~a 135 (211)
T 3ltm_A 79 --------D---ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D--------ERAVEPLIKALKD-EDWFVRIAAAFA 135 (211)
T ss_dssp --------C---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C--------GGGHHHHHHHTTC-SSHHHHHHHHHH
T ss_pred --------C---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 2 233445556667767777777776665552 2 4688999998853 477888989999
Q ss_pred HHhcCccccccCchhhHHHHHHHhCCCCchhhhhhccCCcccchhhhhchhhhhH-HHHHHHHhcCh-hHHHHHHhhhhc
Q 002389 448 LSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSWSS-KIAKSIIEIGK-PIYYALEKGLKS 525 (929)
Q Consensus 448 l~~l~g~fs~sg~~~~~~~llk~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~l~~~g~-~~l~aL~~~l~s 525 (929)
|-.+|. +-+...|++.. .++ +.+-| .++.+|-..|. ..+.+|.+.+.+
T Consensus 136 L~~~~~-------~~~~~~L~~~l--~d~---------------------~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d 185 (211)
T 3ltm_A 136 LGEIGD-------ERAVEPLIKAL--KDE---------------------DGWVRQSAADALGEIGGERVRAAMEKLAET 185 (211)
T ss_dssp HHHHCC-------GGGHHHHHHHT--TCS---------------------SHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHcCC-------HHHHHHHHHHH--cCC---------------------CHHHHHHHHHHHHHhCchhHHHHHHHHHhC
Confidence 988753 22333333322 111 11222 33444555564 577888888877
Q ss_pred CCccccccc
Q 002389 526 KTKSVCRDS 534 (929)
Q Consensus 526 ~~~~l~~~c 534 (929)
+.+.+.+..
T Consensus 186 ~~~~vr~~A 194 (211)
T 3ltm_A 186 GTGFARKVA 194 (211)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 776655443
No 348
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.39 E-value=7.3 Score=42.66 Aligned_cols=225 Identities=8% Similarity=-0.004 Sum_probs=119.3
Q ss_pred CCEEEEEEe-CCEEEEEECCCeEEEEECCCCCeeEEEEec---cCCCcEEEEEEcCC---CCEEEEEeC----C----Ce
Q 002389 650 GAVTALIYY-KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK---EHRKAVTSFSLFEP---GESLLSGSA----D----KT 714 (929)
Q Consensus 650 ~~Vtsl~fs-~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~---gH~~~Vtslafspd---g~~LaSgs~----D----gt 714 (929)
..-+.++|. ++.|+.+..+|.|+++|. +++ ..+..+. ........|+|+|+ +..|+.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 456789998 778888888899999974 333 3343332 22356889999998 555554432 3 56
Q ss_pred EEEEEccCC--eE---EEE-E-Ee---ccCCCeEEeccCCCEEEEEec-------------CCeEEEEeCCCce------
Q 002389 715 IGVWQMVQR--KL---ELI-E-VI---ATKEPIRKLDTYGKTIFASTQ-------------GHRMKVIDSSRTL------ 765 (929)
Q Consensus 715 IrIWDl~tg--~~---~~~-~-~~---~h~~~V~s~s~~g~~L~sgs~-------------Dg~V~IWDl~~~~------ 765 (929)
|..|+...+ .. ... . .. .|...-..|.++|...++.+. .|.|.-++.++..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776554 11 111 1 11 122233457788875555332 2456556555431
Q ss_pred ---ee-eccCCCeEEEEEe--CCEEEEEECCC----cEEEEEccCCccc------------eecccccccccCCCCeEEE
Q 002389 766 ---KD-IYRSKGIKSMSVV--QGKIYIGCMDS----SIQELAVSNNVER------------EIKAPFKSWRLQSKPINSL 823 (929)
Q Consensus 766 ---~~-l~~~~~V~sla~s--dg~llsgs~Dg----~I~iwDl~tg~~~------------~i~~~~~~~~~~~~~I~sl 823 (929)
.. .........++++ +|.++++.... .|.+. ..+... ....|...|.........+
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 11 1123345677886 46677655432 13322 222210 0111222221123345566
Q ss_pred EEc-------CCceEEEEEecCCCeEEEEECCCC-CeE---EEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 824 VVY-------KDWLYSASSSVEGSNIKEWRRHRK-PQI---SIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 824 ~~~-------~d~i~~~s~S~dDgtI~IWDl~~~-~~i---~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
.+. .++.+.++ ...++.|...++... ... ..+.+....+..+++.|||.+.++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIA-CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEE-ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEE-EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 663 22333333 335678888887643 322 22223345788999999998776654
No 349
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.21 E-value=6.4 Score=42.96 Aligned_cols=153 Identities=10% Similarity=0.019 Sum_probs=90.9
Q ss_pred EeccCCCEEEEEe-cCCeEEEEeCCC-ceeeec-cC--------CCeEEEEE----eCCEEEEEEC--------------
Q 002389 739 KLDTYGKTIFAST-QGHRMKVIDSSR-TLKDIY-RS--------KGIKSMSV----VQGKIYIGCM-------------- 789 (929)
Q Consensus 739 s~s~~g~~L~sgs-~Dg~V~IWDl~~-~~~~l~-~~--------~~V~sla~----sdg~llsgs~-------------- 789 (929)
.|......++.++ ..++|..||..+ ....+. .. ..+..+.+ +++++++...
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 3444456666666 688999999873 222221 11 13578888 3777665333
Q ss_pred CCcEEEEEcc---CCccceeccccccccc-------CCCCeEEEEEcCCceEEEEEecCC-CeEEEEECCCCCeEEEe--
Q 002389 790 DSSIQELAVS---NNVEREIKAPFKSWRL-------QSKPINSLVVYKDWLYSASSSVEG-SNIKEWRRHRKPQISIA-- 856 (929)
Q Consensus 790 Dg~I~iwDl~---tg~~~~i~~~~~~~~~-------~~~~I~sl~~~~d~i~~~s~S~dD-gtI~IWDl~~~~~i~~l-- 856 (929)
+..+..||+. +++............+ .......+...+++..-++.+ -. +.|...+.+........
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s-~~~~~I~rV~pdG~~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA-LGMPAIARVSADGKTVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE-ESSCEEEEECTTSCCEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC-CCCCeEEEEeCCCCEEeeeeec
Confidence 5779999998 5544321100000000 112466777777766555444 24 56777776655333222
Q ss_pred ---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002389 857 ---PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ 892 (929)
Q Consensus 857 ---~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg 892 (929)
.......+.|+++|+|..|+....+|.+..+|+.+.
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 112224679999999998888877999999998743
No 350
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.08 E-value=0.25 Score=59.98 Aligned_cols=221 Identities=11% Similarity=0.068 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEccC----CeEEEEEEeccCCC-eEEec
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQ----RKLELIEVIATKEP-IRKLD 741 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl~t----g~~~~~~~~~h~~~-V~s~s 741 (929)
.+.|+..++.+... ...+ .....+..++|.+.+..|+.+. ..+.|+.+++.+ .........+...+ -.++.
T Consensus 385 ~~~I~~id~~~~~~--~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY--TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCE--ECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcc--eeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 35677888876543 2222 2234567889998777766554 467899998865 11111110011111 12445
Q ss_pred cCCCEEEEE-ecCCeEEEEeCCCcee-eecc--CCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCccceeccccccc
Q 002389 742 TYGKTIFAS-TQGHRMKVIDSSRTLK-DIYR--SKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREIKAPFKSW 813 (929)
Q Consensus 742 ~~g~~L~sg-s~Dg~V~IWDl~~~~~-~l~~--~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i~~~~~~~ 813 (929)
+.+..|+.+ ...+.|.+++..+... .+.. ......+++. +|.++.+.. .+.|..+++.......+.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~------ 535 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------ 535 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES------
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE------
Confidence 445555544 4567899999875432 2222 2345667775 566555443 267777776543222211
Q ss_pred ccCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 814 RLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPE--KGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 814 ~~~~~~I~sl~~~~d~--i~~~s~S~dDgtI~IWDl~~~~~i~~l~~--h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
.......+.+++.++. +|.+. ...+.|..+++.+......... .......|++..+ .++++....+.|..++.
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEE--TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCCCCCccEEEEeccCCEEEEEe--cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 1122345567777643 33332 2457899999876543333321 1233455666554 44455566789999999
Q ss_pred CCCcEEEEEeC
Q 002389 890 GTQQKVGRISA 900 (929)
Q Consensus 890 ~sg~~i~tl~~ 900 (929)
.+|+.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 88888777754
No 351
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.89 E-value=4.1 Score=43.17 Aligned_cols=220 Identities=9% Similarity=0.037 Sum_probs=109.4
Q ss_pred CCCEEEEEeC----CCeEEEEEccCCeEEEEEEeccC-CCeEEeccCCCEEEEEec----C-----CeEEEEeCCCce-e
Q 002389 702 PGESLLSGSA----DKTIGVWQMVQRKLELIEVIATK-EPIRKLDTYGKTIFASTQ----G-----HRMKVIDSSRTL-K 766 (929)
Q Consensus 702 dg~~LaSgs~----DgtIrIWDl~tg~~~~~~~~~h~-~~V~s~s~~g~~L~sgs~----D-----g~V~IWDl~~~~-~ 766 (929)
++..++.||. -..+.++|..+++.......... ........++..++.|+. + +.+.+||..... .
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 4555566653 23688899888765433211111 111122334555555554 2 367888876322 1
Q ss_pred eec---cCCCeEEEEEeCCEEEE-EECC-----CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEec
Q 002389 767 DIY---RSKGIKSMSVVQGKIYI-GCMD-----SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSV 837 (929)
Q Consensus 767 ~l~---~~~~V~sla~sdg~lls-gs~D-----g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~ 837 (929)
.+. ....-.+++..++++++ |+.+ ..+.+||..+++-..+... .. ...-.+.....+.++++.+..
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----p~-~r~~~~~~~~~~~iyv~GG~~ 178 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM----LT-RRIGVGVAVLNRLLYAVGGFD 178 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCC----SS-CCBSCEEEEETTEEEEECCBC
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC----Cc-cccceEEEEECCEEEEEeCCC
Confidence 111 11112233344777554 4432 4688899887654433211 00 111123333455566554321
Q ss_pred C---CCeEEEEECCCCCeEEEec--CCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCC---Ce
Q 002389 838 E---GSNIKEWRRHRKPQISIAP--EKGTTIQAMAVVEDFIYLNYNSSA-----SSLQIWLRGTQQKVGRISAGS---KI 904 (929)
Q Consensus 838 d---DgtI~IWDl~~~~~i~~l~--~h~~~V~slafSpdg~~LaSgS~D-----G~I~IWdl~sg~~i~tl~~h~---~V 904 (929)
. -..+..||..+..-...-. .....- +++.. ++++++.|+.+ ..+.+||..+.+....-.... ..
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 256 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 256 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce
Confidence 1 1468899987765332211 111111 22222 67777777754 568999988765432111111 12
Q ss_pred EEEEEcCCEEEEEECCC-----cEEEeec
Q 002389 905 TSLLTANDIVLCGTETG-----LIKGWIP 928 (929)
Q Consensus 905 tsvs~dg~~LaSgs~DG-----~I~IWdi 928 (929)
..+..++++++.||.++ .+.+||+
T Consensus 257 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 257 GITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred EEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 33446777888887553 4666664
No 352
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.88 E-value=8 Score=42.57 Aligned_cols=184 Identities=9% Similarity=0.160 Sum_probs=107.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe-----CCE---EEE-EEC---CCcEEEEEcc--CCccceecc
Q 002389 743 YGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV-----QGK---IYI-GCM---DSSIQELAVS--NNVEREIKA 808 (929)
Q Consensus 743 ~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-----dg~---lls-gs~---Dg~I~iwDl~--tg~~~~i~~ 808 (929)
....++.....+.+.+||+.+..........++.+..- .|+ ++. ... ++++.+|++. ++....+-.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 44567777778899999998665555554566665542 333 333 333 4789999773 333222210
Q ss_pred cccccccCCCCeEEEEE--cC-Cc-eEEEEEecCCCeEEEEEC---CCC----CeEEEecCCCCCeEEEEEecCCCEEEE
Q 002389 809 PFKSWRLQSKPINSLVV--YK-DW-LYSASSSVEGSNIKEWRR---HRK----PQISIAPEKGTTIQAMAVVEDFIYLNY 877 (929)
Q Consensus 809 ~~~~~~~~~~~I~sl~~--~~-d~-i~~~s~S~dDgtI~IWDl---~~~----~~i~~l~~h~~~V~slafSpdg~~LaS 877 (929)
+..........+..++. .+ .+ .+..... .+|.+..|++ ..+ +.++.+.. ...+-.+++.+...+|..
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 00000011133444555 33 23 3555444 5688888886 222 34555543 356889999999999999
Q ss_pred EeCCCcEEEEECC-----CCcEEEEEeCC---CCeEEEEE--c--CC-EEEEEE-CCCcEEEeec
Q 002389 878 NSSASSLQIWLRG-----TQQKVGRISAG---SKITSLLT--A--ND-IVLCGT-ETGLIKGWIP 928 (929)
Q Consensus 878 gS~DG~I~IWdl~-----sg~~i~tl~~h---~~Vtsvs~--d--g~-~LaSgs-~DG~I~IWdi 928 (929)
+-+|.-|..++.. +++.+..+... ..+..++. . ++ +|++++ .+++..+|+.
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 9988766666644 34566555433 23777664 2 44 566555 5778888874
No 353
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.76 E-value=8.7 Score=45.60 Aligned_cols=224 Identities=11% Similarity=0.048 Sum_probs=117.8
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEccCCeEEEEEEeccCCCe--EEeccC
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGS-ADKTIGVWQMVQRKLELIEVIATKEPI--RKLDTY 743 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs-~DgtIrIWDl~tg~~~~~~~~~h~~~V--~s~s~~ 743 (929)
....|+.-|+.+....... +...-+.+..++|++.+..|+-+. ..+.|..+++.............-... .++.+.
T Consensus 16 ~~~~I~~i~~~~~~~~~~~-~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp CSSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred ccccEEEEeCCCCcceEEE-EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence 3466788888754211112 223344578999999777766544 467888888865421111111111122 256665
Q ss_pred CCEEEEEe-cCCeEEEEeCCCcee-eec--cCCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCccceeccccccccc
Q 002389 744 GKTIFAST-QGHRMKVIDSSRTLK-DIY--RSKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREIKAPFKSWRL 815 (929)
Q Consensus 744 g~~L~sgs-~Dg~V~IWDl~~~~~-~l~--~~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i~~~~~~~~~ 815 (929)
++.++.+. ..+.|.+.+.++... .+. .-.....+++. +|.++.... .+.|...++.......+. ..
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~------~~ 168 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII------NS 168 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE------CS
T ss_pred CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE------eC
Confidence 66666654 567999999886432 222 23446778885 677776654 356766676543322221 11
Q ss_pred CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEE
Q 002389 816 QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 816 ~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
.......+++.++...+.-.....+.|..+|.++........+......++++..+ ..+++-...+.|...|..+|+..
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 23456677777543222222234567888887765433322222223346677655 44455456788999998777654
Q ss_pred EEE
Q 002389 896 GRI 898 (929)
Q Consensus 896 ~tl 898 (929)
..+
T Consensus 248 ~~i 250 (619)
T 3s94_A 248 REI 250 (619)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 354
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.47 Score=57.50 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred CccchhhhhhcCCchhHHHHHHHHHHHhccCchhh-HHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccc
Q 002389 333 AVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSA-IDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTL 411 (929)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~-~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l 411 (929)
-...+.+||.++...-|.+|.+++.=|.+ +.... .+|... .+..+..-+|+|+-+++....+.|--||+.|-.|=-
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~-~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts- 683 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNL-ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT- 683 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCC-SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhh-cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC-
Confidence 45677789999999999999999999997 22111 122110 011223359999999999999999999998887611
Q ss_pred cCCC-CCCcch-HHHHHHHHHHHhcc-CChhhhHHHHHHHHhcCc
Q 002389 412 ENTT-GKSVFT-EEAMQVILKAVASE-ESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 412 ~~~~-~~s~yr-eea~~~~~~~l~~~-~~~~~q~~~~~~l~~l~g 453 (929)
.+|. -.-+++ +++++.++.-|... ++..+|..++.++.||..
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1221 122444 48999999999997 789999988888888764
No 355
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.08 E-value=0.39 Score=58.24 Aligned_cols=208 Identities=11% Similarity=0.016 Sum_probs=109.6
Q ss_pred CCeEEEEEccCCeEEEEEEeccCCC-eEEeccCCCEEEEEe-cCCeEEEEeCCC-----ceeeecc--CCCeEEEEEe--
Q 002389 712 DKTIGVWQMVQRKLELIEVIATKEP-IRKLDTYGKTIFAST-QGHRMKVIDSSR-----TLKDIYR--SKGIKSMSVV-- 780 (929)
Q Consensus 712 DgtIrIWDl~tg~~~~~~~~~h~~~-V~s~s~~g~~L~sgs-~Dg~V~IWDl~~-----~~~~l~~--~~~V~sla~s-- 780 (929)
.+.|+..++.++...... .....+ -..+.+.+..|+.+. ..+.|+.+++.+ ....+.. ......+++.
T Consensus 385 ~~~I~~id~~~~~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 456777777665432211 111122 124566667777665 446888888764 1111111 1234556664
Q ss_pred CCEEEEE-ECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC--ceEEEEEecCCCeEEEEECCCCCeEEEec
Q 002389 781 QGKIYIG-CMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD--WLYSASSSVEGSNIKEWRRHRKPQISIAP 857 (929)
Q Consensus 781 dg~llsg-s~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d--~i~~~s~S~dDgtI~IWDl~~~~~i~~l~ 857 (929)
++.|+.+ ...+.|.+++........+. .........+++.|. .+|...+. ..+.|..+++..........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~------~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLF------REQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEEC------CCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEE------eCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEe
Confidence 5665544 45678988888754332221 111233456666653 23322221 12577777776543333332
Q ss_pred CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCcEEEEEeC-C---CCeEEEEEcCCEEE-EEECCCcEEEeec
Q 002389 858 EKGTTIQAMAVVEDFI-YLNYNSSASSLQIWLRGTQQKVGRISA-G---SKITSLLTANDIVL-CGTETGLIKGWIP 928 (929)
Q Consensus 858 ~h~~~V~slafSpdg~-~LaSgS~DG~I~IWdl~sg~~i~tl~~-h---~~Vtsvs~dg~~La-Sgs~DG~I~IWdi 928 (929)
..-...+.|+|+|++. ++++-+..+.|.++++.... ...+.. . ....+++++++.|+ +....++|..++.
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence 3334567899998755 44555567889999986433 333321 1 12445666655444 4445677877764
No 356
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.07 E-value=12 Score=40.95 Aligned_cols=229 Identities=9% Similarity=0.049 Sum_probs=120.5
Q ss_pred CCCEEEEEEe-CCEEEEEEC-CCeEEEEECCCCCeeEEEEe----ccCCCcEEEEEEcCC---CCEEEEE---eCCCeEE
Q 002389 649 SGAVTALIYY-KGLLCSGFS-DGSIKMWDIKKQSAMLVWDV----KEHRKAVTSFSLFEP---GESLLSG---SADKTIG 716 (929)
Q Consensus 649 ~~~Vtsl~fs-~~~LaSGs~-DGtIrIWD~~~~~~~~i~~l----~gH~~~Vtslafspd---g~~LaSg---s~DgtIr 716 (929)
-..-+.|+|. ++.++.+.. .|.|++++..+++...+..+ ....+....|+|+|+ +.+|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3467899998 565666666 89999998766654334333 233567899999996 4444432 2455566
Q ss_pred EEEccCC-----e-----EEEEEEe---ccCCCeEEeccCCCEEEEEec-------------CCeEEEEeCCCce-----
Q 002389 717 VWQMVQR-----K-----LELIEVI---ATKEPIRKLDTYGKTIFASTQ-------------GHRMKVIDSSRTL----- 765 (929)
Q Consensus 717 IWDl~tg-----~-----~~~~~~~---~h~~~V~s~s~~g~~L~sgs~-------------Dg~V~IWDl~~~~----- 765 (929)
-|....+ . .+..... .|...-..|.++|...++.+. .|.|.-.+.++..
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665441 1 1111111 233333457788876555432 2445444544321
Q ss_pred ----eee-ccCCCeEEEEEe-CCEEEEEEC--CCcEEEEEccCCccc------------eecccccccccCCCCeEEEEE
Q 002389 766 ----KDI-YRSKGIKSMSVV-QGKIYIGCM--DSSIQELAVSNNVER------------EIKAPFKSWRLQSKPINSLVV 825 (929)
Q Consensus 766 ----~~l-~~~~~V~sla~s-dg~llsgs~--Dg~I~iwDl~tg~~~------------~i~~~~~~~~~~~~~I~sl~~ 825 (929)
..+ .+......++|. +|.++++-. ++.-.+.-+..|... .+..|...|..+......+.+
T Consensus 191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 191 FPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp STTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 011 123446677886 777777543 332333333333221 111222222222223445666
Q ss_pred cCCceEEEEEecCCCeEEEEECCCCC----eEEEecCCCCCeEEEEEecCCCEEEEEe
Q 002389 826 YKDWLYSASSSVEGSNIKEWRRHRKP----QISIAPEKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 826 ~~d~i~~~s~S~dDgtI~IWDl~~~~----~i~~l~~h~~~V~slafSpdg~~LaSgS 879 (929)
..+..+.... .++.|....+.... ....+.+....+..++..|||.++++.+
T Consensus 271 ~~g~~~~~~l--~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 271 AEGSVWMAGL--RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ETTEEEEEES--TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred EcCceeeccc--cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6555544433 34555555554332 2334444456899999999998766654
No 357
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.03 E-value=6.1 Score=43.57 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCeEEEEECCCC--CeeEEEEecc-----CCCcEEEEEEcC--CCC-EEEEEe-C--CCeEEEEEccCC--eEEEEEEe
Q 002389 667 SDGSIKMWDIKKQ--SAMLVWDVKE-----HRKAVTSFSLFE--PGE-SLLSGS-A--DKTIGVWQMVQR--KLELIEVI 731 (929)
Q Consensus 667 ~DGtIrIWD~~~~--~~~~i~~l~g-----H~~~Vtslafsp--dg~-~LaSgs-~--DgtIrIWDl~tg--~~~~~~~~ 731 (929)
.+|.|.++|.++. +...+ .+.+ ..-....+.+.+ +|. +|+.+. . +.+|.+|+++.+ ........
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 7999999999843 32222 2222 233567777766 454 354442 2 567888887653 22222222
Q ss_pred ccCC--CeE--EeccCCCEEEEEe-----------------cCCeEEEEeCCCceeeeccCCCeEEEEEe-CCE-EEEE-
Q 002389 732 ATKE--PIR--KLDTYGKTIFAST-----------------QGHRMKVIDSSRTLKDIYRSKGIKSMSVV-QGK-IYIG- 787 (929)
Q Consensus 732 ~h~~--~V~--s~s~~g~~L~sgs-----------------~Dg~V~IWDl~~~~~~l~~~~~V~sla~s-dg~-llsg- 787 (929)
.+.. ... .+.++|...++.. ..|.|.-+|..........-...+.++++ |++ ++.+
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEe
Confidence 2211 112 2445665444432 12455556654222222223457789998 664 5554
Q ss_pred ECCCcEEEEEccC
Q 002389 788 CMDSSIQELAVSN 800 (929)
Q Consensus 788 s~Dg~I~iwDl~t 800 (929)
+..+.|..|++..
T Consensus 240 t~~~~I~~~~~~~ 252 (355)
T 3sre_A 240 LLAHKIHVYEKHA 252 (355)
T ss_dssp GGGTEEEEEEECT
T ss_pred CCCCeEEEEEECC
Confidence 4578899999864
No 358
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.99 E-value=7.1 Score=50.46 Aligned_cols=218 Identities=9% Similarity=0.034 Sum_probs=122.3
Q ss_pred CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCE
Q 002389 667 SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKT 746 (929)
Q Consensus 667 ~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~ 746 (929)
.+.+|.|-|+..+.....+.+. --+.-.+|..+.++--+ .+++.|+|+++.... .......+|.-|.+-...
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~kl--ks~~~~e~VvfWkWis~~ 117 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKM--KAHTMTDDVTFWKWISLN 117 (1630)
T ss_pred CCceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhh--cccccCCCceEEEecCCC
Confidence 3447888898876532111111 12334678777666544 789999999876432 223345677777655444
Q ss_pred EEEEecCCeEEEEeCCCc---eeeecc-----CCCeEEEEEe-CCE--EEEEE------CCCcEEEEEccCCccceeccc
Q 002389 747 IFASTQGHRMKVIDSSRT---LKDIYR-----SKGIKSMSVV-QGK--IYIGC------MDSSIQELAVSNNVEREIKAP 809 (929)
Q Consensus 747 L~sgs~Dg~V~IWDl~~~---~~~l~~-----~~~V~sla~s-dg~--llsgs------~Dg~I~iwDl~tg~~~~i~~~ 809 (929)
.+.--.+..|+.|++.+. .+.+.. +..|..-..+ +.+ +++|- -.|.+.+|....+...
T Consensus 118 ~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----- 192 (1630)
T 1xi4_A 118 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----- 192 (1630)
T ss_pred eeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-----
Confidence 444445678999999642 111211 2234333333 444 33332 3588888988765432
Q ss_pred ccccccCCCCeEEEEEc--CCceEEEEEe---cCCCeEEEEECCCC----Ce-----EEEecC---CCCCeEEEEEecCC
Q 002389 810 FKSWRLQSKPINSLVVY--KDWLYSASSS---VEGSNIKEWRRHRK----PQ-----ISIAPE---KGTTIQAMAVVEDF 872 (929)
Q Consensus 810 ~~~~~~~~~~I~sl~~~--~d~i~~~s~S---~dDgtI~IWDl~~~----~~-----i~~l~~---h~~~V~slafSpdg 872 (929)
...+|......+... +......++. +.|+.++|.++... .. +..+.. ..+...++..|+..
T Consensus 193 --~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~ 270 (1630)
T 1xi4_A 193 --PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH 270 (1630)
T ss_pred --hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc
Confidence 234554444333332 2212222222 35678999887432 11 111111 13344567778877
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 873 IYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 873 ~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
..+..-+.-|.|++||+.+|.++..-+
T Consensus 271 g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 271 DVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred CEEEEEecCceEEEEecccchhhhhcc
Confidence 777777789999999999998865443
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.86 E-value=11 Score=39.84 Aligned_cols=245 Identities=9% Similarity=0.043 Sum_probs=132.2
Q ss_pred CEEEEEEeCCE-EEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeEEEE
Q 002389 651 AVTALIYYKGL-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELI 728 (929)
Q Consensus 651 ~Vtsl~fs~~~-LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~~~~ 728 (929)
.|..|+..... ++. . ||.|..|-....-.. ..-......|..++-..+. .++. . ||.|..|-... +++-
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gql--g~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg-- 95 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQL--TMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT-- 95 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTT--SCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC--
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCC--CCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC--
Confidence 46666666443 333 5 999999976542110 0001122356666654332 2333 4 89999997543 2211
Q ss_pred EEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ce-eeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccce
Q 002389 729 EVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TL-KDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVERE 805 (929)
Q Consensus 729 ~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~-~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~ 805 (929)
........|..+.......+..+ +|.|+.|-.+. .+ ........|..++......++-. ||.++.|-........
T Consensus 96 ~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp CCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS
T ss_pred CCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC
Confidence 01112346777777777777778 99999997652 21 11222455777776666644445 7999998765422221
Q ss_pred ecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 002389 806 IKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQ 885 (929)
Q Consensus 806 i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~ 885 (929)
+ |... ...|..+.........+ . +|.++.|-.+..-...........|..++...+....++ ||.|+
T Consensus 174 ~--p~~~----~~~v~~i~~G~~hs~al--~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~ 240 (282)
T 3qhy_B 174 V--PAEA----QSGVDDVAGGIFHSLAL--K--DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVI 240 (282)
T ss_dssp C--CGGG----GSSEEEEEECSSEEEEE--E--TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEE
T ss_pred C--ceec----CCCeEEEEecCCEEEEE--E--CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEE
Confidence 1 1111 34577776655554444 2 789999986542211111112235777776554444443 99999
Q ss_pred EEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEECCCc
Q 002389 886 IWLRGTQQKVGRISAGSKITSLLTANDIVLCGTETGL 922 (929)
Q Consensus 886 IWdl~sg~~i~tl~~h~~Vtsvs~dg~~LaSgs~DG~ 922 (929)
.|-.....++. ....|.+++-...+.+.-..|+.
T Consensus 241 ~wG~n~~gq~~---v~~~v~~iaaG~~h~~al~~~~~ 274 (282)
T 3qhy_B 241 AWGSSRTAPSS---VQSGVSSIEAGPNAAYALKGGSG 274 (282)
T ss_dssp EESTTCCCCGG---GSSCEEEEEECSSCEEEEEC---
T ss_pred EecCCCCcccc---CCCCcEEEEECcCeEEEEecCCC
Confidence 99755432221 12347777766554444444443
No 360
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.78 E-value=20 Score=42.56 Aligned_cols=191 Identities=10% Similarity=0.057 Sum_probs=114.9
Q ss_pred CCEEEEEEe--CCE-EEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEccCCeE
Q 002389 650 GAVTALIYY--KGL-LCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLL-SGSADKTIGVWQMVQRKL 725 (929)
Q Consensus 650 ~~Vtsl~fs--~~~-LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~La-Sgs~DgtIrIWDl~tg~~ 725 (929)
..+..|+|+ ++. +++-..++.|..+++.+.... ..+.........+++.+.+..|+ +-...+.|.+.+++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence 457789998 455 455567899999999875432 22222224567889987777654 445567899999865432
Q ss_pred EEEEEeccCCCe-EEeccCCCEEEEEec--CCeEEEEeCCCceee-e-ccCCCeEEEEEe--CCEEEEEE-CCCcEEEEE
Q 002389 726 ELIEVIATKEPI-RKLDTYGKTIFASTQ--GHRMKVIDSSRTLKD-I-YRSKGIKSMSVV--QGKIYIGC-MDSSIQELA 797 (929)
Q Consensus 726 ~~~~~~~h~~~V-~s~s~~g~~L~sgs~--Dg~V~IWDl~~~~~~-l-~~~~~V~sla~s--dg~llsgs-~Dg~I~iwD 797 (929)
..........|. .++.|....++.... .+.|...++++.... + ........+++. +++++.+. ..+.|..+|
T Consensus 115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d 194 (628)
T 4a0p_A 115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194 (628)
T ss_dssp EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence 222112222221 245666667777664 457777777743322 2 233457788887 56666554 567899999
Q ss_pred ccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCC
Q 002389 798 VSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKP 851 (929)
Q Consensus 798 l~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~ 851 (929)
+..+....+ .........++...+.+|...+ ..+.|...|..++.
T Consensus 195 ~dG~~~~v~-------~~~l~~P~glav~~~~ly~tD~--~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 195 MLGLNREVI-------ADDLPHPFGLTQYQDYIYWTDW--SRRSIERANKTSGQ 239 (628)
T ss_dssp TTSCSCEEE-------EECCSCEEEEEEETTEEEEEET--TTTEEEEEETTTCC
T ss_pred CCCCceEEe-------eccCCCceEEEEECCEEEEecC--CCCEEEEEECCCCC
Confidence 876433221 1223345577777776665543 46788888865554
No 361
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.58 E-value=15 Score=40.48 Aligned_cols=188 Identities=14% Similarity=0.231 Sum_probs=110.8
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCC----CCE----EEEEeC--CCeEEEEEcc--CCeEEEE
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEP----GES----LLSGSA--DKTIGVWQMV--QRKLELI 728 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspd----g~~----LaSgs~--DgtIrIWDl~--tg~~~~~ 728 (929)
+++....++-+.+||+. ++ .++.+.. +.++.+..-|+ |+. ++|.-. +++|.+|++. ++.+...
T Consensus 42 ~ii~t~k~~gL~Vydl~-G~--~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLD-GK--MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEETT-SC--EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred EEEEEcCCCCEEEEcCC-Cc--EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 66777778899999994 43 3566643 55677666652 332 333334 5799999773 4432221
Q ss_pred EE----eccC-CCe--EEe--ccC-CC-EEEEEecCCeEEEEeCC---------CceeeeccCCCeEEEEEe--CCEEEE
Q 002389 729 EV----IATK-EPI--RKL--DTY-GK-TIFASTQGHRMKVIDSS---------RTLKDIYRSKGIKSMSVV--QGKIYI 786 (929)
Q Consensus 729 ~~----~~h~-~~V--~s~--s~~-g~-~L~sgs~Dg~V~IWDl~---------~~~~~l~~~~~V~sla~s--dg~lls 786 (929)
.. .... ..+ .|+ ++. +. ++++...+|.+..|++. +..+++.....+..+... .++++.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 00 0011 111 244 443 33 68888889999998873 123444446667777776 578999
Q ss_pred EECCCcEEEEEccCCc--cceecccccccc-cC-CCCeEEEEEc--CCce-EEEEEecCCCeEEEEECC-CCCeEEEe
Q 002389 787 GCMDSSIQELAVSNNV--EREIKAPFKSWR-LQ-SKPINSLVVY--KDWL-YSASSSVEGSNIKEWRRH-RKPQISIA 856 (929)
Q Consensus 787 gs~Dg~I~iwDl~tg~--~~~i~~~~~~~~-~~-~~~I~sl~~~--~d~i-~~~s~S~dDgtI~IWDl~-~~~~i~~l 856 (929)
+-.+..|..++..... ..... ..+. ++ ...+..+... +++. +++..+..+++..+||.. ..+.+..+
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v---~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVI---DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEE---EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEE---EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 9999777777754221 11110 1111 11 2346666664 4333 666666667899999996 56655555
No 362
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.51 E-value=3.6 Score=42.90 Aligned_cols=234 Identities=11% Similarity=-0.032 Sum_probs=135.9
Q ss_pred HHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhc---ch-hhHHHHHhcCCCchhhhh
Q 002389 156 ILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRN---VP-EAAILIYLIKPSPTEIKT 231 (929)
Q Consensus 156 ~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~---~~-~~~vl~~l~~~~~~~~~~ 231 (929)
-++.|++.| .+.++.|-..++..|..+. ++.++ ..+..+|+.. +- .|+-.+..+.+......
T Consensus 24 ~i~~L~~~L-~~~~~~vr~~A~~~L~~~~--~~~~~----------~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 24 NDDELFRLL-DDHNSLKRISSARVLQLRG--GQDAV----------RLAIEFCSDKNYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp CHHHHHHHT-TCSSHHHHHHHHHHHHHHC--CHHHH----------HHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred hHHHHHHHH-HcCCHHHHHHHHHHHHccC--CchHH----------HHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence 467888876 4678888889998888776 33333 3344555552 32 44444444543222111
Q ss_pred ccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHH
Q 002389 232 LELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLA 311 (929)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 311 (929)
.++|.|...+.+ ++.+. + +.+|+..|..+-.+.. ...+.++..|+..+...+.+-|..++
T Consensus 90 -~l~~~L~~~~~~-d~~~~--v------r~~a~~aL~~l~~~~~----------~~~~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 90 -NVFNILNNMALN-DKSAC--V------RATAIESTAQRCKKNP----------IYSPKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp -HHHHHHHHHHHH-CSCHH--H------HHHHHHHHHHHHHHCG----------GGHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -HHHHHHHHHHhc-CCCHH--H------HHHHHHHHHHHhccCC----------cccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 123333322222 11101 0 3555555555532210 11356677888888888888888888
Q ss_pred HHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhh
Q 002389 312 TILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQ 391 (929)
Q Consensus 312 ~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq 391 (929)
.-|-..-. .--..+++++|...+...|..|+.-|..+-.- .-.....|+..|+
T Consensus 150 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 150 FAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYD----------------NSDIRDCFVEMLQ 202 (280)
T ss_dssp HHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC----------------CHHHHHHHHHHTT
T ss_pred HHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC----------------cHHHHHHHHHHhc
Confidence 87764321 12356777888888888888887777654211 1123445556666
Q ss_pred cccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHh
Q 002389 392 QLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKA 471 (929)
Q Consensus 392 ~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~a 471 (929)
...++-+--++..|-++. -++++..|++.|...+ ++..+++||-.+|. +-...+|.+..
T Consensus 203 d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~-------~~~~~~L~~~l 261 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD-------KTLLPVLDTML 261 (280)
T ss_dssp CSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC-------GGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc-------hhhhHHHHHHH
Confidence 666666666666665543 3579999999997643 77888999988875 33445555543
No 363
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=92.33 E-value=6.6 Score=47.77 Aligned_cols=202 Identities=7% Similarity=0.001 Sum_probs=114.8
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLAT 312 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 312 (929)
+++|.++..+...++.+++. .-.++.+|...|..|...+.. -+.+.++..+...+...+.+.|..++.
T Consensus 324 ~il~~ll~~l~~~~~d~~d~---~~~~r~~a~~~L~~l~~~~~~---------~~~~~l~~~l~~~l~~~~~~~r~~a~~ 391 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDD---DWNVSMSAGACLQLFAQNCGN---------HILEPVLEFVEQNITADNWRNREAAVM 391 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCC---CCHHHHHHHHHHHHHHHHHGG---------GGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccc---cCcHHHHHHHHHHHHHHHccH---------hHHHHHHHHHHHHcCCCChhHHHHHHH
Confidence 67888888887644321111 124567777788777665421 123456777777787778888887776
Q ss_pred HHHhhhhccCcch-hHHHhhcC--ccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHH
Q 002389 313 ILVKCIQFDGQCR-KYLSEFTA--VAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLS 389 (929)
Q Consensus 313 ~l~~c~~~d~~cr-~~ia~~~~--~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~ 389 (929)
.|-... ..|+ ..+...++ ...+++.+...+...|..|+..|..+...-.... ....-.-..|..|+.+
T Consensus 392 ~l~~i~---~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~~l~~l~~~ 462 (861)
T 2bpt_A 392 AFGSIM---DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI------DPQQHLPGVVQACLIG 462 (861)
T ss_dssp HHHHTS---SSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS------CTTTTHHHHHHHHHHH
T ss_pred HHHHHH---cCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc------CCHHHHHHHHHHHHHH
Confidence 665554 2343 43433322 2334555555666677777665555443211000 0000111235566666
Q ss_pred hhcccchhhHHHHHHHhhh-ccccC--CCCCCcchHHHHHHHHHHHhccC-ChhhhHHHHHHHHhcCcccc
Q 002389 390 LQQLQSDYQLLAANLLLQL-DTLEN--TTGKSVFTEEAMQVILKAVASEE-SSTMQLLSSFILSNIGGTFS 456 (929)
Q Consensus 390 lq~~~~~~~~~~a~lllql-d~l~~--~~~~s~yreea~~~~~~~l~~~~-~~~~q~~~~~~l~~l~g~fs 456 (929)
|+.. ++-+--++..|-++ +.+++ +....-|-++-+..|+..|...+ ++.++..+.+||..+.....
T Consensus 463 l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 463 LQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred hccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 7654 43333333333322 22332 45566788999999999998765 36788888898888876543
No 364
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.30 E-value=14 Score=39.59 Aligned_cols=196 Identities=7% Similarity=0.058 Sum_probs=95.5
Q ss_pred CCCCEEEEEe--CCCeEEEEEccCCeEEEEEEeccCCCeEEeccCCCEEEEEecC--------------CeEEEEeCCCc
Q 002389 701 EPGESLLSGS--ADKTIGVWQMVQRKLELIEVIATKEPIRKLDTYGKTIFASTQG--------------HRMKVIDSSRT 764 (929)
Q Consensus 701 pdg~~LaSgs--~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs~D--------------g~V~IWDl~~~ 764 (929)
++|.+++-.. .++.|...+.+......... ..+..+.+++++|+.+... ..|+..++++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEE----EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccC----CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 4566655443 24555555554333222111 1234577888888877653 35677777654
Q ss_pred eeeeccCCCeEEEEEeCCEEEEEE----CCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCC
Q 002389 765 LKDIYRSKGIKSMSVVQGKIYIGC----MDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS 840 (929)
Q Consensus 765 ~~~l~~~~~V~sla~sdg~llsgs----~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg 840 (929)
............++..++.++-.. ....|+..++.......+. . +. +. .+.+++..+.-.+....
T Consensus 99 ~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt------~-~~--~~--~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 99 GSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK------N-HY--LF--TCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE------S-SC--CC--CSEEETTEEEEECTTTC
T ss_pred cceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe------C-CC--ce--EeeEECCEEEEEeCCCc
Confidence 433333333445555567766554 3445555666543322221 1 11 11 12233322221221246
Q ss_pred eEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEE
Q 002389 841 NIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSAS--SLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCG 917 (929)
Q Consensus 841 tI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG--~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~~LaSg 917 (929)
.|...++.++.......+ ... ..++|++.+|+-...++ .|..-++..+. ...+. ...+..+++++++|+-+
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-~~~~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-EANIEHYNVYGSLIFYQ 240 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-CSCEEEEEEETTEEEEE
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-CCCcceEEECCCEEEEE
Confidence 788888777654433332 222 34668888887665432 45444554433 22232 22344566666655544
No 365
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.71 E-value=8.1 Score=42.88 Aligned_cols=313 Identities=10% Similarity=0.087 Sum_probs=150.0
Q ss_pred HHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCc-chhhhhhhHHhhHhh
Q 002389 105 ELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASK-EETVIRASVSILTTI 183 (929)
Q Consensus 105 ~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~-~~~v~~~~v~il~~~ 183 (929)
+....++..+-....+++-.- ..+...|+.+.+... |. . .-|.++..|++.+.... ++.+.+.++.+|..+
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~--~~-~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEI--PV-N---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHG--GG-T---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhc--cc-c---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 344555555544444443222 245555555543321 21 1 12778999998876654 788999999998888
Q ss_pred hhcch-hhhhhhhhcCCCchHHHH----HHhhc-----chhhH--HHHHhcCCCchhhhhccchhHHHHHHhccccccCc
Q 002389 184 ILANE-SVIEDIKKKGLRLSDLAT----ALKRN-----VPEAA--ILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGK 251 (929)
Q Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~~----~lk~~-----~~~~~--vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (929)
...-+ ... ++.+..+.. .|+.. |-.++ .|..++.--...+....+.+.++.++...-..+..
T Consensus 158 ~~~~~~~~~------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 158 CQDIDPEQL------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHHSCGGGT------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHhCCchhh------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 75321 111 112222222 33221 11111 12222211111111100122334444321111010
Q ss_pred ccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhcc----------
Q 002389 252 LESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFD---------- 321 (929)
Q Consensus 252 ~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d---------- 321 (929)
. =+.+++..+..+...+...- ..++. ..++..++..++..+.+-|..+++.+..+.+..
T Consensus 232 ~------vr~~~~~~l~~l~~~~~~~~-~~~~~----~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~ 300 (462)
T 1ibr_B 232 R------VRVAALQNLVKIMSLYYQYM-ETYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (462)
T ss_dssp H------HHHHHHHHHHHHHHHCGGGC-TTTTT----TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred H------HHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0 13556667777766432100 01111 155666777777666667888888887776543
Q ss_pred --------CcchhHHHhhcC--ccchhhhhhcC-------CchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHH
Q 002389 322 --------GQCRKYLSEFTA--VAPLACLLQSG-------EKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILH 384 (929)
Q Consensus 322 --------~~cr~~ia~~~~--~~~~~~l~~~~-------~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh 384 (929)
..|+.++...++ ...+++.|... +...|.+|...|..|...-...+.. ..|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----------~~~~ 369 (462)
T 1ibr_B 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----------HVLP 369 (462)
T ss_dssp TCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----------HHHH
T ss_pred cccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----------HHHH
Confidence 344444422111 01222333221 2245555655555554432211110 1233
Q ss_pred HHHHHhhcccchhhHHHHHHHhhhccccC--CCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCcccc
Q 002389 385 ILKLSLQQLQSDYQLLAANLLLQLDTLEN--TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFS 456 (929)
Q Consensus 385 ~~l~~lq~~~~~~~~~~a~lllqld~l~~--~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs 456 (929)
.+..+|+...+..|--+...|- .+... |..+.-|-++.+..|+.+|... ++.++..|+.+|-.++..+.
T Consensus 370 ~l~~~l~~~~~~~r~aal~~l~--~l~~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 370 FIKEHIKNPDWRYRDAAVMAFG--CILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHH--HTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhcCCChHHHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcc
Confidence 3444555444444433322222 22222 2345567789999999999765 68999999999988887663
No 366
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.51 E-value=2.4 Score=46.54 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeEEEEeccC-CCcEEEEEE--cCCCCEEEEE--eCCCeEEEEEccCCeEEEEEEec-
Q 002389 659 KGLLCSGFSDGSIKMWDIKKQSAMLVWDVKEH-RKAVTSFSL--FEPGESLLSG--SADKTIGVWQMVQRKLELIEVIA- 732 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~gH-~~~Vtslaf--spdg~~LaSg--s~DgtIrIWDl~tg~~~~~~~~~- 732 (929)
++.++.++.||.|.-.|..+++. ..+++.. ..++....- .+.+..++.+ +.||.+..++..+|.........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 56899999999999999998854 5666443 123322110 0112234433 58999999999888544322221
Q ss_pred --cCCCeEE-----e-c----cCCCEEEEEecCCeEEEEeCC
Q 002389 733 --TKEPIRK-----L-D----TYGKTIFASTQGHRMKVIDSS 762 (929)
Q Consensus 733 --h~~~V~s-----~-s----~~g~~L~sgs~Dg~V~IWDl~ 762 (929)
...|+.. + . ..+..+++++.+|.+...|..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~ 129 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML 129 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC
Confidence 1122221 0 0 156788999999999999977
No 367
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=91.41 E-value=19 Score=39.27 Aligned_cols=201 Identities=10% Similarity=0.046 Sum_probs=106.2
Q ss_pred EEEEEe--CCEEEEEE-CCCeEEEEECCCCCeeEEEEecc----CCC--cEEEEEE---cCCCCEEEEEe----------
Q 002389 653 TALIYY--KGLLCSGF-SDGSIKMWDIKKQSAMLVWDVKE----HRK--AVTSFSL---FEPGESLLSGS---------- 710 (929)
Q Consensus 653 tsl~fs--~~~LaSGs-~DGtIrIWD~~~~~~~~i~~l~g----H~~--~Vtslaf---spdg~~LaSgs---------- 710 (929)
-+++|+ ++.+..++ ..|+|..||..++....+ .+.+ ... .+..+.| .|+|..+++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 367887 46666666 799999999986643333 3432 111 3579999 68876666433
Q ss_pred ---CCCeEEEEEcc---CCeEEEEEEe-ccC---------C--CeE--EeccCCCEEEEEecC-CeEEEEeCCCceeeec
Q 002389 711 ---ADKTIGVWQMV---QRKLELIEVI-ATK---------E--PIR--KLDTYGKTIFASTQG-HRMKVIDSSRTLKDIY 769 (929)
Q Consensus 711 ---~DgtIrIWDl~---tg~~~~~~~~-~h~---------~--~V~--s~s~~g~~L~sgs~D-g~V~IWDl~~~~~~l~ 769 (929)
.++.+..+|+. +++....... ... . ... .+.++|+.-++++.. +.|...+.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-------- 166 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-------- 166 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT--------
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC--------
Confidence 26778888988 6654322221 000 0 111 234445544444444 43333332
Q ss_pred cCCCeEEEEEeCCEEEEEECCCc-EEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECC
Q 002389 770 RSKGIKSMSVVQGKIYIGCMDSS-IQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRH 848 (929)
Q Consensus 770 ~~~~V~sla~sdg~llsgs~Dg~-I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~ 848 (929)
||. +..|.+... +.......+-+.++|++..++.... ++.+..+|+.
T Consensus 167 --------------------dG~~~~~~~~~~~-----------~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 167 --------------------DGKTVSTFAWESG-----------NGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp --------------------TSCCEEEEEECCC-----------CSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred --------------------CCCEEeeeeecCC-----------CcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 221 233433220 0111234567888888877666654 7788888877
Q ss_pred CCCe--EEEe-cCC---CCCeEEE-EEecCCCE-EEEEeCCCcEEEEECCCCcE
Q 002389 849 RKPQ--ISIA-PEK---GTTIQAM-AVVEDFIY-LNYNSSASSLQIWLRGTQQK 894 (929)
Q Consensus 849 ~~~~--i~~l-~~h---~~~V~sl-afSpdg~~-LaSgS~DG~I~IWdl~sg~~ 894 (929)
.... +... .+. ......+ ..-.+|+. +++.+..+.+.+.+...++.
T Consensus 215 ~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 215 KPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp SSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSE
T ss_pred CCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcce
Confidence 4322 2111 021 1223343 33346776 55555666666666554443
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.17 E-value=11 Score=39.74 Aligned_cols=214 Identities=10% Similarity=0.056 Sum_probs=118.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeEEEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--cee-e
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKLELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLK-D 767 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~-~ 767 (929)
..|..++-... ..++. . ||.+..|-... +++- ........|..++......+... ||.|+.|-.+. .+. .
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg--~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLT--MPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTS--CCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCC--CCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCC
Confidence 35777765432 22333 4 89999997543 2211 01112335666766666655555 99999997652 111 1
Q ss_pred eccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC
Q 002389 768 IYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR 847 (929)
Q Consensus 768 l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl 847 (929)
......|..++......++-. +|.++.|-........+ +. .....|..+......... .. ++.+..|-.
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~--~~----~~~~~i~~i~~G~~~~~~--l~--~G~v~~wG~ 166 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV--PA----EAQSGVTALDGGVYTALA--VK--NGGVIAWGD 166 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC--CG----GGGSSEEEEEECSSEEEE--EE--TTEEEEEEC
T ss_pred cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC--Cc----cCCCCeEEEEcccCEEEE--EE--CCEEEEecC
Confidence 112356888888777766666 99999997654222211 11 113456666655544433 33 588999986
Q ss_pred CCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEE-EeCCCCeEEEEEcCCEEEEEECCCcEEEe
Q 002389 848 HRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGR-ISAGSKITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 848 ~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~t-l~~h~~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
...-.+.....-...|..++...+....+ .||.|+.|-....-.+.. ......|..++....+.+.-+ ||.|+.|
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~w 242 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIAW 242 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEEE
T ss_pred CCCCCCCCceecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEEe
Confidence 54221111111234677777654443333 499999997543221110 011234777776655444444 9999988
No 369
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.15 E-value=4.7 Score=49.56 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=54.2
Q ss_pred HHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchh
Q 002389 383 LHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPY 462 (929)
Q Consensus 383 mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~ 462 (929)
+..++-.|+...+.=|--++..|-++=-...+.....|-++.+..|++.|... ++.+|..|+.||.++.-.....=.||
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 45555666555555555555555444322222346789999999999999765 78999999999998875544333455
Q ss_pred hHHHH
Q 002389 463 TVAWL 467 (929)
Q Consensus 463 ~~~~l 467 (929)
...-+
T Consensus 481 l~~ll 485 (852)
T 4fdd_A 481 LAYIL 485 (852)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 370
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.03 E-value=3.1 Score=51.20 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=90.8
Q ss_pred hhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcC--ccchhhhhhcCCchhHHHHHHHHHHHhccCc--h
Q 002389 290 RVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTA--VAPLACLLQSGEKRAIMIALEFFHEILRIPR--S 365 (929)
Q Consensus 290 ~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~--~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r--~ 365 (929)
.+++.++..+..++.+-|..++..|..-++..+ .++..+++ ...+++++...+...|..|++|+..+..-.. .
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRM---DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH---HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 566777777777788888888888876665322 22222221 2345566777788899999999998875321 1
Q ss_pred ----hhHHH----HHHh----------hcc-----------Cch-----------------------hHHHHHHHHhhcc
Q 002389 366 ----SAIDL----LQRI----------HKE-----------GNI-----------------------NILHILKLSLQQL 393 (929)
Q Consensus 366 ----~~~~~----l~~~----------~~~-----------~~~-----------------------~~mh~~l~~lq~~ 393 (929)
...++ ++.+ +.+ ... ..|..+..+|+..
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~ 371 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH 371 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 01122 2222 111 000 1233334444444
Q ss_pred cchhhHHHHHHHhhhccccC--CCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCcccc
Q 002389 394 QSDYQLLAANLLLQLDTLEN--TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFS 456 (929)
Q Consensus 394 ~~~~~~~~a~lllqld~l~~--~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs 456 (929)
.+..|-.++..|-++ .+ +.....|-++.+..|+..|.. .++.++..|+.+|..++..+.
T Consensus 372 ~~~~R~aa~~alg~i---~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 372 EWVVKESGILVLGAI---AEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp SHHHHHHHHHHHHHT---TTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhc
Confidence 444444433333222 11 112234667777788877754 478899999999998876553
No 371
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=89.82 E-value=7.1 Score=43.36 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHhcC-cchhhhhhhHHhhHhhhhcchh-----hhhhhhhcCCCchHHHH-----HHhhc---chhhH--
Q 002389 153 QDVILEQLLTAISAS-KEETVIRASVSILTTIILANES-----VIEDIKKKGLRLSDLAT-----ALKRN---VPEAA-- 216 (929)
Q Consensus 153 ~~~~i~~~~e~~~~s-~~~~v~~~~v~il~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~lk~~---~~~~~-- 216 (929)
.|.++..|++++.++ .+++|-..+..+|..++.++.. ....|...+++.....+ +|+.. +..++
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~ 112 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQC 112 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHH
Confidence 578999999999986 4677877888888888765321 11223333322211111 11110 10000
Q ss_pred ---HHHHhc--CCCchhhhhccchhHHHHHHhcc--ccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchh
Q 002389 217 ---ILIYLI--KPSPTEIKTLELLPTLVEVICTS--KLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSP 289 (929)
Q Consensus 217 ---vl~~l~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (929)
+..+.. ..| -+++|.|++.+..+ +.. -+.+|+..+..+...+.... ..-..+
T Consensus 113 i~~ia~~~~~~~~w------~~ll~~L~~~l~~~~~~~~----------~r~~al~~l~~l~~~~~~~~-----~~~~~~ 171 (462)
T 1ibr_B 113 VAGIACAEIPVNQW------PELIPQLVANVTNPNSTEH----------MKESTLEAIGYICQDIDPEQ-----LQDKSN 171 (462)
T ss_dssp HHHHHHHHGGGTCC------TTHHHHHHHHHHCTTCCHH----------HHHHHHHHHHHHHHHSCGGG-----TGGGHH
T ss_pred HHHHHHHhcccccc------HHHHHHHHHHhccCCCCHH----------HHHHHHHHHHHHHHhCCchh-----hHhHHH
Confidence 111110 123 27888888888764 221 14778888888876432111 111134
Q ss_pred hhHhHHHHHhhcc--ChHHHHHHHHHHHhhhhccCc------chhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhc
Q 002389 290 RVLCGLLDVARHQ--NLEELISLATILVKCIQFDGQ------CRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 290 ~~~~~l~~~~~~~--~~~e~~~~~~~l~~c~~~d~~------cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~ 361 (929)
.++..++..+... +.+-|..|+..|..|+..-+. -++|+- ..+.+++.+.+...|..+++.|.+|..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~-----~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM-----QVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHH-----HHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5677777888766 577788888888887753110 112221 223345666677888889999988875
Q ss_pred cC
Q 002389 362 IP 363 (929)
Q Consensus 362 l~ 363 (929)
..
T Consensus 247 ~~ 248 (462)
T 1ibr_B 247 LY 248 (462)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 372
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=89.67 E-value=0.85 Score=53.97 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=75.9
Q ss_pred hhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCc-chhHHHhh-cCccchhhhhhcCCchhHHHHHHHHHHHhccCc-
Q 002389 288 SPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQ-CRKYLSEF-TAVAPLACLLQSGEKRAIMIALEFFHEILRIPR- 364 (929)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~-cr~~ia~~-~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r- 364 (929)
.+..+.-|++.++..+..-|..++.+|..-..+.+. =...|... ...+.++.+|......-|..|+.+|.+|.+=|-
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 577888999999999999999999888855555544 66666644 778899999999999999999999999999987
Q ss_pred --------hhhHHHHHHhhccCc
Q 002389 365 --------SSAIDLLQRIHKEGN 379 (929)
Q Consensus 365 --------~~~~~~l~~~~~~~~ 379 (929)
-....++..|+.||+
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHhccHHHHHHHHHhcCC
Confidence 125678999999886
No 373
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.44 E-value=33 Score=38.93 Aligned_cols=215 Identities=10% Similarity=0.057 Sum_probs=111.6
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc----CCCeEE--ec
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT----KEPIRK--LD 741 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h----~~~V~s--~s 741 (929)
..++.|+|+++... +....- ..+|.-=.|-.+.. |+-.+ +..|..|++............| ...|.. .+
T Consensus 85 g~~lQiFnle~K~k--lks~~~-~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d 159 (494)
T 1bpo_A 85 GKTLQIFNIEMKSK--MKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD 159 (494)
T ss_dssp TTEEEEEETTTTEE--EEEEEC-SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC
T ss_pred CCeEEEEchHHhhh--hcceec-CCCceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC
Confidence 68999999998753 333322 34666667765443 33333 5689999996533222222222 123433 35
Q ss_pred cCCCEEEEEe-------cCCeEEEEeCCCceeeeccCCCeE--EEEEeC----CEEEE-EEC---CCcEEEEEccCC--c
Q 002389 742 TYGKTIFAST-------QGHRMKVIDSSRTLKDIYRSKGIK--SMSVVQ----GKIYI-GCM---DSSIQELAVSNN--V 802 (929)
Q Consensus 742 ~~g~~L~sgs-------~Dg~V~IWDl~~~~~~l~~~~~V~--sla~sd----g~lls-gs~---Dg~I~iwDl~tg--~ 802 (929)
++.++++..+ -.|.+.+|..++.......++... .+..++ ..+++ +.. .+.+++.++... .
T Consensus 160 ~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~ 239 (494)
T 1bpo_A 160 AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG 239 (494)
T ss_dssp TTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT
T ss_pred CCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC
Confidence 6666655443 236888999886554443332211 222221 12443 222 378899988543 1
Q ss_pred ccee-ccccccc---ccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEE
Q 002389 803 EREI-KAPFKSW---RLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 803 ~~~i-~~~~~~~---~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSg 878 (929)
...+ +....++ .......-++..++..-...-.. ..|.+++||+.++.++..-+-....|..-+.+.+..=++.-
T Consensus 240 ~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT-K~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~V 318 (494)
T 1bpo_A 240 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV 318 (494)
T ss_dssp CCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred CCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe-cCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEE
Confidence 0000 0000011 12234445566665432222222 57899999999999887665555555554444443334444
Q ss_pred eCCCcEEEEE
Q 002389 879 SSASSLQIWL 888 (929)
Q Consensus 879 S~DG~I~IWd 888 (929)
...|.|.--.
T Consensus 319 nr~GqVl~v~ 328 (494)
T 1bpo_A 319 NRKGQVLSVC 328 (494)
T ss_dssp ETTCEEEEEE
T ss_pred ccCceEEEEE
Confidence 4555544433
No 374
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.42 E-value=28 Score=38.05 Aligned_cols=213 Identities=10% Similarity=0.084 Sum_probs=111.1
Q ss_pred CCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEecc----CCCeEE--ec
Q 002389 668 DGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIAT----KEPIRK--LD 741 (929)
Q Consensus 668 DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h----~~~V~s--~s 741 (929)
..++.|+|+++... +....- ..+|.-=.|-.+... +-.+ +..|..|++............| ...|.. .+
T Consensus 86 g~~LQiFnletK~k--lks~~~-~e~VvfWkWis~~~L-~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d 160 (365)
T 2xzh_A 86 GKTLQIFNIEMKSK--MKAHTM-TDDVTFWKWISLNTV-ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD 160 (365)
T ss_dssp TTEEEEEETTTTEE--EEEEEC-SSCEEEEEECSSSEE-EEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC
T ss_pred CCeEEEechHHhhh--hcceec-CCccEEEEecCCCeE-EEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC
Confidence 68899999998753 333322 457877788655443 3333 5689999997533222222222 123433 35
Q ss_pred cCCCEEEEEe-------cCCeEEEEeCCCceeeeccCCCeE--EEEEe----CCEEEE-EE---CCCcEEEEEccCC--c
Q 002389 742 TYGKTIFAST-------QGHRMKVIDSSRTLKDIYRSKGIK--SMSVV----QGKIYI-GC---MDSSIQELAVSNN--V 802 (929)
Q Consensus 742 ~~g~~L~sgs-------~Dg~V~IWDl~~~~~~l~~~~~V~--sla~s----dg~lls-gs---~Dg~I~iwDl~tg--~ 802 (929)
++.++++..+ -.|.+.+|..++.......++... .+... ...+++ +. ..+.+++.++... .
T Consensus 161 ~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~ 240 (365)
T 2xzh_A 161 AKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG 240 (365)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT
T ss_pred CCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC
Confidence 6666655443 236888999886554443333221 12221 112433 21 2368888888442 1
Q ss_pred ccee-ccccccc---ccCCCCeEEEEEcCCc--eEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEE
Q 002389 803 EREI-KAPFKSW---RLQSKPINSLVVYKDW--LYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLN 876 (929)
Q Consensus 803 ~~~i-~~~~~~~---~~~~~~I~sl~~~~d~--i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~La 876 (929)
...+ +....++ .......-++..++.. +|.++ .-|.+++||+.++.++..-+-....|..-+.+.+..=++
T Consensus 241 ~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT---K~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~ 317 (365)
T 2xzh_A 241 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 317 (365)
T ss_dssp CCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEE
T ss_pred CCCcccccceeeCCccccCCceEEEEecccCCEEEEEe---CCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEE
Confidence 1011 0000011 1123444456666543 33343 568999999999998876655555555444444333333
Q ss_pred EEeCCCcEEEEE
Q 002389 877 YNSSASSLQIWL 888 (929)
Q Consensus 877 SgS~DG~I~IWd 888 (929)
.-...|.|.--.
T Consensus 318 ~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 318 GVNRKGQVLSVC 329 (365)
T ss_dssp EEETTCEEEEEE
T ss_pred EEcCCCEEEEEE
Confidence 333555544433
No 375
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=89.36 E-value=0.6 Score=48.56 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=83.9
Q ss_pred chhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHH
Q 002389 234 LLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATI 313 (929)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~ 313 (929)
-+|.+|+.|.+++...+. +..|...+..|-.+. ..+-..+...|+|+.|++.++.++.+-+..|+.-
T Consensus 9 ~i~~lV~lL~s~~~~~~~--------q~~Aa~~l~~L~~~~-----~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~a 75 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSR--------ISAAATFIQHECFQK-----SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGA 75 (233)
T ss_dssp CHHHHHHTCCSSCCCHHH--------HHHHHHHHHHHHHHC-----HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHH--------HHHHHHHHHHHHcCC-----cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 478889989876641011 234445565554322 2345556678999999999999988888888777
Q ss_pred HHhhhhccCcchhHHHhhcCccchhhhhhc-CCchhHHHHHHHHHHHhccC
Q 002389 314 LVKCIQFDGQCRKYLSEFTAVAPLACLLQS-GEKRAIMIALEFFHEILRIP 363 (929)
Q Consensus 314 l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~-~~~~~~~~~~~~~~el~~l~ 363 (929)
|..----+..+|..|++.=-..|+++||.+ +....+..|...|..|-...
T Consensus 76 L~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 654433345789999999889999999984 67888888988888886544
No 376
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.26 E-value=34 Score=38.80 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.8
Q ss_pred CCEEEEEEe-CCEEEEEECCC-eEEEEECCCCCeeEEEEecc------CCCcEEEEEEcCC---CCEEEEE
Q 002389 650 GAVTALIYY-KGLLCSGFSDG-SIKMWDIKKQSAMLVWDVKE------HRKAVTSFSLFEP---GESLLSG 709 (929)
Q Consensus 650 ~~Vtsl~fs-~~~LaSGs~DG-tIrIWD~~~~~~~~i~~l~g------H~~~Vtslafspd---g~~LaSg 709 (929)
...+.|+|. ++.++.+...| .|++++..++....+..+.. ..+....|+|+|+ +..|+.+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 356799998 66666667765 79988876555444444432 3467889999996 5555443
No 377
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=88.60 E-value=40 Score=38.79 Aligned_cols=241 Identities=8% Similarity=0.087 Sum_probs=125.7
Q ss_pred CEEEEEEeC---CEEEEEE-CCCeEEEEECCCCCeeEEEEec-cCCCcEEEEEE-------cCCCCEEEEEeCCC-----
Q 002389 651 AVTALIYYK---GLLCSGF-SDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSL-------FEPGESLLSGSADK----- 713 (929)
Q Consensus 651 ~Vtsl~fs~---~~LaSGs-~DGtIrIWD~~~~~~~~i~~l~-gH~~~Vtslaf-------spdg~~LaSgs~Dg----- 713 (929)
....|+|++ +.|+.+. ..+.|++.|.+++....+.... ........++| +++|++|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467888884 3455444 4477889999887543222211 12235899999 99999766665543
Q ss_pred --eEEEEEccC-CeEE------EEEEeccCCCeEEeccCCCEEEE-EecCCeEEEEeCC--------Cce----------
Q 002389 714 --TIGVWQMVQ-RKLE------LIEVIATKEPIRKLDTYGKTIFA-STQGHRMKVIDSS--------RTL---------- 765 (929)
Q Consensus 714 --tIrIWDl~t-g~~~------~~~~~~h~~~V~s~s~~g~~L~s-gs~Dg~V~IWDl~--------~~~---------- 765 (929)
.|.+.+... |... ......+... .++.+.+..|+. -..++.|..+|+. +..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~g-iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNG-ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCC-EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceE-EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255565333 2221 1111122222 246675555554 4566789999975 211
Q ss_pred --eee---ccCCCeEEEEEe-CCE-EEEEE-CCCcEEEEEccC--Ccc---ceec-c-cccccc------cCCCCeE-EE
Q 002389 766 --KDI---YRSKGIKSMSVV-QGK-IYIGC-MDSSIQELAVSN--NVE---REIK-A-PFKSWR------LQSKPIN-SL 823 (929)
Q Consensus 766 --~~l---~~~~~V~sla~s-dg~-llsgs-~Dg~I~iwDl~t--g~~---~~i~-~-~~~~~~------~~~~~I~-sl 823 (929)
..+ ........++++ +|. ++.+. ..+.|+.++... +.. ..+. . ...-+. ..-.... -+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 112335688887 665 55554 567788866543 211 0010 0 000000 0011223 33
Q ss_pred EEc-------CCceEEEEEecCCCeEEEEECCCCCeEEEecCC------------------------CCCeEEEEEecC-
Q 002389 824 VVY-------KDWLYSASSSVEGSNIKEWRRHRKPQISIAPEK------------------------GTTIQAMAVVED- 871 (929)
Q Consensus 824 ~~~-------~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h------------------------~~~V~slafSpd- 871 (929)
... .++.+.++-. ..+.|+.++. .+. +.++.+. -.....|+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~-~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDR-LNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEG-GGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEccccccccCCCeEEEEEC-CCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 443 3333333322 4578998884 444 3333322 023567888886
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE
Q 002389 872 FIYLNYNSSASSLQIWLRGTQQKV 895 (929)
Q Consensus 872 g~~LaSgS~DG~I~IWdl~sg~~i 895 (929)
|.++++=+..+.|+.++++....+
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEECCCCccc
Confidence 666666666778888877655444
No 378
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.59 E-value=6.6 Score=47.61 Aligned_cols=403 Identities=13% Similarity=0.020 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCC-chHHHHH
Q 002389 129 DYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLR-LSDLATA 207 (929)
Q Consensus 129 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 207 (929)
.|.+..+++|..-+. ++. +-...++.+...|.++..+. .+.+|--|+.+ |.+..+++. ++.|.. +..+..+
T Consensus 313 lAavvL~KL~~~~~~-~~~----si~~La~~~~~~L~~~~~~~-~~~AvEgLaYL-Sl~~~VKe~-L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 313 YSALVLVKTWSFTKL-TCI----NLKQLSEIFINAISRRIVPK-VEMSVEALAYL-SLKASVKIM-IRSNESFTEILLTM 384 (778)
T ss_dssp HHHHHHHHHTGGGTC-TTC----CHHHHHHHHHHHTTTCCHHH-HHHHHHHHHHH-TTSSHHHHH-HHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-CcC----cHHHHHHHHHHHHhcCCccH-HHHHHHHHHHH-hCCHHHHHH-HHhCHHHHHHHHHH
Confidence 467788899864432 221 11236677788888765554 88899888877 677777764 556666 7788888
Q ss_pred Hhh----cch-hh-HHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchh
Q 002389 208 LKR----NVP-EA-AILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNM 281 (929)
Q Consensus 208 lk~----~~~-~~-~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~ 281 (929)
||. .++ .+ .||--+.+-.+..-.++ |.+.+.....+.. ...-.|+++.. . |...-.+
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~---~~l~~Lk~~A~~~-----~p~~~~~d~~~--~-------~~~~v~~ 447 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXX---XXXXXXXXXXXXX-----XPAADKVGAEK--A-------AKEDILL 447 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC---C-----------------------CCTHH--H-------HHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhh---hhhhhhhhhcccc-----CcccCcccccc--c-------chHHHHH
Confidence 885 243 33 34444444322211101 1111111111100 00001122211 0 0011112
Q ss_pred -hhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCch---hHHHHHHHHH
Q 002389 282 -HLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKR---AIMIALEFFH 357 (929)
Q Consensus 282 -~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~---~~~~~~~~~~ 357 (929)
+...+.-.|+++.|+..+..++..-|..|+.+|..= -.|..||..+++.=-..+++++|.++... .|..|..-|.
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 345666779999999999888888888888877743 46799999999987789999999998654 6878887777
Q ss_pred HHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchh---------hH---HHHHHHhhhccccCC------CCCCc
Q 002389 358 EILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDY---------QL---LAANLLLQLDTLENT------TGKSV 419 (929)
Q Consensus 358 el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~---------~~---~~a~lllqld~l~~~------~~~s~ 419 (929)
-|+--.- .+.+ +...-......-|+-=|+..|..+ .| -.-.|+-=..|-.-| -+..|
T Consensus 527 rLlis~n---p~~~--f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~I 601 (778)
T 3opb_A 527 RMLIFTN---PGLI--FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHI 601 (778)
T ss_dssp HHHHTSC---HHHH--SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhcCC---HHHH--cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHH
Confidence 7762111 0100 111111222222222222111100 11 000100001111222 14567
Q ss_pred chH-HHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCchh--h-hhhccC-Ccccchhhh
Q 002389 420 FTE-EAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWL--Q-NMIRNF-DWLDQSLQD 494 (929)
Q Consensus 420 yre-ea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~~~--~-~~~~~~-~~~~~~~~~ 494 (929)
-+| .|+..|.+-|.. ++..+|..|+++|.||.. +.+..+. |-.....+-. + .-.-.+ +-.|...+.
T Consensus 602 i~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~----~~e~i~~----k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~ 672 (778)
T 3opb_A 602 VSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMS----HPLTIAA----KFFNLENPQSLRNFNILVKLLQLSDVESQR 672 (778)
T ss_dssp HHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHT----SGGGTGG----GTSCCSSHHHHHHHHHHHHGGGCSCHHHHH
T ss_pred HHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhC----CcHHHHH----HHHhhcCchhhccHHHHHHHHcCCCHHHHH
Confidence 785 799999888865 688999999999999974 2221111 1111111100 0 000000 001222222
Q ss_pred hc------hhhhhHHHHHHHHhcC-h--hHHHHHHhhhhcCCccccccccchhHhhhcccCCCCc--cchhhh-HHhhHH
Q 002389 495 RG------VDSWSSKIAKSIIEIG-K--PIYYALEKGLKSKTKSVCRDSLTTIAWLSFEVSKSPN--SVRHSA-CQILLD 562 (929)
Q Consensus 495 ~~------~~~w~~~~~~~l~~~g-~--~~l~aL~~~l~s~~~~l~~~cL~~~~Wl~~~L~~lpd--~~~~~A-r~~Ll~ 562 (929)
.+ ...-...+|..|+... + .++.-|++- .+.+++.+-.+++.+.|..+...-.+ .+..-. ...+..
T Consensus 673 AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~--~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~ 750 (778)
T 3opb_A 673 AVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ--IDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKD 750 (778)
T ss_dssp HHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHH
Confidence 21 1223445667777642 1 344444432 38899999999999999876543222 121111 334555
Q ss_pred hHHhhcCCCcc
Q 002389 563 GVEQFLHPGLE 573 (929)
Q Consensus 563 eL~~~L~~~~~ 573 (929)
.+...+..+..
T Consensus 751 ~l~~~lk~~~~ 761 (778)
T 3opb_A 751 ALNMSLKRGDS 761 (778)
T ss_dssp HHHHHHSSSSS
T ss_pred HHHHHHhCCCc
Confidence 55555555533
No 379
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.86 E-value=38 Score=36.70 Aligned_cols=226 Identities=9% Similarity=0.109 Sum_probs=113.2
Q ss_pred CEEEEEEe-CCE-EEEEECCCeEEEEECCCCCeeEEEEe----ccCCCcEEEEEEcCC---CCEEEEEe-C-------CC
Q 002389 651 AVTALIYY-KGL-LCSGFSDGSIKMWDIKKQSAMLVWDV----KEHRKAVTSFSLFEP---GESLLSGS-A-------DK 713 (929)
Q Consensus 651 ~Vtsl~fs-~~~-LaSGs~DGtIrIWD~~~~~~~~i~~l----~gH~~~Vtslafspd---g~~LaSgs-~-------Dg 713 (929)
.-+.|+|. ++. ++.+..+|.|++++........+..+ ....+....++|+|+ +.+|+.+. . ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 46789998 556 88888899999998643211111111 122356789999996 55554432 2 23
Q ss_pred eEEEEEccCC--eEE--EEEEe--------ccCCCeEEeccCCCEEEEEec-------------CCeEEEEeCCCce---
Q 002389 714 TIGVWQMVQR--KLE--LIEVI--------ATKEPIRKLDTYGKTIFASTQ-------------GHRMKVIDSSRTL--- 765 (929)
Q Consensus 714 tIrIWDl~tg--~~~--~~~~~--------~h~~~V~s~s~~g~~L~sgs~-------------Dg~V~IWDl~~~~--- 765 (929)
.|..|+...+ ... ..... .|...-..|.++|...++.+. .|.|.-++.++..
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666666432 111 11111 122223457788854444332 2456666665431
Q ss_pred -----------eee-ccCCCeEEEEEe--CCEEEEEECCC--cEEEEEccCCccc-------------------------
Q 002389 766 -----------KDI-YRSKGIKSMSVV--QGKIYIGCMDS--SIQELAVSNNVER------------------------- 804 (929)
Q Consensus 766 -----------~~l-~~~~~V~sla~s--dg~llsgs~Dg--~I~iwDl~tg~~~------------------------- 804 (929)
..+ ........++|. +|.++++.... .-.+.-+..+...
T Consensus 179 npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~ 258 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVA 258 (353)
T ss_dssp CTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCT
T ss_pred CCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCC
Confidence 111 123447788886 57777755432 2222222222210
Q ss_pred eecccccccccCCCCeEEEEEcC-------CceEEEEEecCCCeEEEEECCCCCeEEE---ecCCCCCeEEEEEecCCCE
Q 002389 805 EIKAPFKSWRLQSKPINSLVVYK-------DWLYSASSSVEGSNIKEWRRHRKPQISI---APEKGTTIQAMAVVEDFIY 874 (929)
Q Consensus 805 ~i~~~~~~~~~~~~~I~sl~~~~-------d~i~~~s~S~dDgtI~IWDl~~~~~i~~---l~~h~~~V~slafSpdg~~ 874 (929)
....|...|.. ...+..+.+.. .+.+.++ ...++.|...+++.+..... +......+..+++.|||.+
T Consensus 259 ~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 336 (353)
T 2g8s_A 259 GTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIG-ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL 336 (353)
T ss_dssp TSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEE-ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred CccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEE-EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence 00111111211 12344555543 1333333 23566777777665543322 2233357899999999986
Q ss_pred EEEE
Q 002389 875 LNYN 878 (929)
Q Consensus 875 LaSg 878 (929)
.++.
T Consensus 337 yv~t 340 (353)
T 2g8s_A 337 YVLT 340 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 380
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=86.56 E-value=34 Score=35.72 Aligned_cols=194 Identities=10% Similarity=0.071 Sum_probs=111.5
Q ss_pred CCCCCEEEEEEe--CC-EEEEEECCCeEEEEECCCCCeeEEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 002389 647 KCSGAVTALIYY--KG-LLCSGFSDGSIKMWDIKKQSAMLVWDV--KEHRKAVTSFSLFEPGESLLSGSADKTIGVWQMV 721 (929)
Q Consensus 647 gH~~~Vtsl~fs--~~-~LaSGs~DGtIrIWD~~~~~~~~i~~l--~gH~~~Vtslafspdg~~LaSgs~DgtIrIWDl~ 721 (929)
|-.+.+..++|+ ++ ++++...++.|...|.. ++. +..+ .+. .....+++.+++.++++.-.++.+.++++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--IRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--EEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--EEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 445679999998 34 45567788999999998 543 4443 332 457888999999877776677889999876
Q ss_pred CCeE-EEEEEe--cc-----CC--CeEEeccCCCEEEEEecCCeEEEEeCCC-----ceeeec--------cCCCeEEEE
Q 002389 722 QRKL-ELIEVI--AT-----KE--PIRKLDTYGKTIFASTQGHRMKVIDSSR-----TLKDIY--------RSKGIKSMS 778 (929)
Q Consensus 722 tg~~-~~~~~~--~h-----~~--~V~s~s~~g~~L~sgs~Dg~V~IWDl~~-----~~~~l~--------~~~~V~sla 778 (929)
.... ...... .. .. .-.++.+.++.++++.......+|.+++ ...... ....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 111111 11 11 1235677888888887766555555432 111110 122467888
Q ss_pred Ee--CCEEEE-EECCCcEEEEEccCCccceecccccccc---cCCCCeEEEEEcCCceEEEEEecCCCeEEEEEC
Q 002389 779 VV--QGKIYI-GCMDSSIQELAVSNNVEREIKAPFKSWR---LQSKPINSLVVYKDWLYSASSSVEGSNIKEWRR 847 (929)
Q Consensus 779 ~s--dg~lls-gs~Dg~I~iwDl~tg~~~~i~~~~~~~~---~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl 847 (929)
++ .+++++ ...+..+.++|.... .........-+. ..-.....+++.+++...++. +.+.++.|..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs--E~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS--EPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE--TTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc--CCceEEEEEe
Confidence 86 667555 455677888887643 222211110000 011244567777766544442 4555555543
No 381
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.85 E-value=24 Score=37.86 Aligned_cols=181 Identities=8% Similarity=0.019 Sum_probs=87.1
Q ss_pred CeEEEEECCCCCeeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC-----------------------------------
Q 002389 669 GSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSGSAD----------------------------------- 712 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~-gH~~~Vtslafspdg~~LaSgs~D----------------------------------- 712 (929)
..+.+||..+.+...+..+. .....-.++. .+++.++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46889999987654333222 1111222222 466777778755
Q ss_pred ----CeEEEEEccCCeEEEEEEeccCC-C-eEEeccCCCEEEEEec------CCeEEEEeC--CCc-eeeecc---CCC-
Q 002389 713 ----KTIGVWQMVQRKLELIEVIATKE-P-IRKLDTYGKTIFASTQ------GHRMKVIDS--SRT-LKDIYR---SKG- 773 (929)
Q Consensus 713 ----gtIrIWDl~tg~~~~~~~~~h~~-~-V~s~s~~g~~L~sgs~------Dg~V~IWDl--~~~-~~~l~~---~~~- 773 (929)
..+.+||..+.+........... . ......++..++.|+. ...+..||+ ... -..... ...
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~ 243 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc
Confidence 57889999888765443322111 1 1222334455555543 345777876 321 111111 111
Q ss_pred -eEEEEEeCCEEE-EEECC----------------------CcEEEEEccCCccceecccccccccCCCCeEEEEEcCCc
Q 002389 774 -IKSMSVVQGKIY-IGCMD----------------------SSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDW 829 (929)
Q Consensus 774 -V~sla~sdg~ll-sgs~D----------------------g~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~ 829 (929)
-.++...+++++ .|+.+ ..+.+||..+++-..+... ...... .......+.
T Consensus 244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~-~~~~~~~~~ 318 (357)
T 2uvk_A 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL----SQGRAY-GVSLPWNNS 318 (357)
T ss_dssp BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC----SSCCBS-SEEEEETTE
T ss_pred ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC----CCCccc-ceeEEeCCE
Confidence 123444577744 45422 2577899887655443211 011111 223334566
Q ss_pred eEEEEEecCC----CeEEEEECCCCCeEEEe
Q 002389 830 LYSASSSVEG----SNIKEWRRHRKPQISIA 856 (929)
Q Consensus 830 i~~~s~S~dD----gtI~IWDl~~~~~i~~l 856 (929)
++++.+...+ ..+.++++++++.+...
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 6666554222 24666688877765543
No 382
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=85.46 E-value=33 Score=41.57 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhcC-cchhhhhhhHHhhHhhhhcchh-----hhhhhhhcCCCchH-----HHHHHhhc---chhhH--
Q 002389 153 QDVILEQLLTAISAS-KEETVIRASVSILTTIILANES-----VIEDIKKKGLRLSD-----LATALKRN---VPEAA-- 216 (929)
Q Consensus 153 ~~~~i~~~~e~~~~s-~~~~v~~~~v~il~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~lk~~---~~~~~-- 216 (929)
+|.++..|+++|.+. .+++|=..+..+|...+..+.. ..+.|...++.... +...|.+. +..++
T Consensus 33 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~~~~~~~ 112 (876)
T 1qgr_A 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQC 112 (876)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHH
T ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 588999999999876 4566666777777777654322 23445443333221 22222221 11111
Q ss_pred ---HHHHhc--CCCchhhhhccchhHHHHHHhcc--ccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchh
Q 002389 217 ---ILIYLI--KPSPTEIKTLELLPTLVEVICTS--KLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSP 289 (929)
Q Consensus 217 ---vl~~l~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (929)
+..+.. .-| -+++|.+++.+..+ +.. =+.+|+..+..++...+.+ . ..-..+
T Consensus 113 l~~i~~~~~~~~~w------~~ll~~l~~~l~~~~~~~~----------~r~~al~~l~~l~~~~~~~----~-~~~~~~ 171 (876)
T 1qgr_A 113 VAGIACAEIPVNQW------PELIPQLVANVTNPNSTEH----------MKESTLEAIGYICQDIDPE----Q-LQDKSN 171 (876)
T ss_dssp HHHHHHHHGGGTCC------TTHHHHHHHHHHCTTCCHH----------HHHHHHHHHHHHHHHSCHH----H-HGGGHH
T ss_pred HHHHHHhhCccccc------HHHHHHHHHHHhCCCCCHH----------HHHHHHHHHHHHHHhcCHh----h-HHhHHH
Confidence 111110 222 25788888888654 211 1466777777776543211 1 111245
Q ss_pred hhHhHHHHHhhcc--ChHHHHHHHHHHHhhhhccCc------chhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhc
Q 002389 290 RVLCGLLDVARHQ--NLEELISLATILVKCIQFDGQ------CRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 290 ~~~~~l~~~~~~~--~~~e~~~~~~~l~~c~~~d~~------cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~ 361 (929)
.++..+...+..+ +.+.|..++..|..++..-+. -|+++ ...+.+++...+...|..|+..|.+|+.
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~i-----l~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFI-----MQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHH-----HHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 6677777777665 577788888888877754211 01111 2223445666677889999999999987
Q ss_pred cCc
Q 002389 362 IPR 364 (929)
Q Consensus 362 l~r 364 (929)
...
T Consensus 247 ~~~ 249 (876)
T 1qgr_A 247 LYY 249 (876)
T ss_dssp HSG
T ss_pred HhH
Confidence 554
No 383
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=85.01 E-value=31 Score=40.31 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHh
Q 002389 103 KSELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTT 182 (929)
Q Consensus 103 ~~~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~ 182 (929)
..++.+.+.+.|..+..+.+-.=-. .|+..+.++++ . +|+. +-.+.+++.+.+.| .+.++.|...++..|.+
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk-~A~~al~~i~~--~-~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRK-TAAVCVAKLHD--I-NAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSE 186 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHH-HHHHHHHHHHH--S-SCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHHh--h-Chhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHH
Confidence 3445556556665554433322223 57778888876 2 2332 12246788888876 58899999999999999
Q ss_pred hhhcch
Q 002389 183 IILANE 188 (929)
Q Consensus 183 ~~~~~~ 188 (929)
+...+.
T Consensus 187 i~~~~~ 192 (591)
T 2vgl_B 187 ISESHP 192 (591)
T ss_dssp HTTSCC
T ss_pred HHhhCC
Confidence 877664
No 384
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=84.44 E-value=11 Score=38.44 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=118.8
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhh-ccChHHHHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVAR-HQNLEELISLA 311 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~e~~~~~ 311 (929)
.+-|.+.+-+.+++-. + +.+|+.-|..++.+.+.... .+. ..++..|...+. ..|..-|..++
T Consensus 15 ~l~~~l~~~l~s~~w~-~---------R~~a~~~L~~l~~~~~~~~~-~~~-----~~i~~~L~~~l~kd~~~~V~~~a~ 78 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWT-L---------RKESLEVLEKLLTDHPKLEN-GEY-----GALVSALKKVITKDSNVVLVAMAG 78 (242)
T ss_dssp GSCTTHHHHHTCSSHH-H---------HHHHHHHHHHHHHHCSSBCC-CCC-----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred cCCHHHHhhhccCCHH-H---------HHHHHHHHHHHHccCCCCCC-CCH-----HHHHHHHHHHhccCCCHHHHHHHH
Confidence 3455666666543211 2 57888888899887322111 111 244666777774 67877777777
Q ss_pred HHHHhhhhccCcchhHHHhhcC--ccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHH
Q 002389 312 TILVKCIQFDGQCRKYLSEFTA--VAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLS 389 (929)
Q Consensus 312 ~~l~~c~~~d~~cr~~ia~~~~--~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~ 389 (929)
..|-.....= +..+...++ ..++++.|.......|.+|...|.+++.-- +.-..|..++.+
T Consensus 79 ~~l~~la~~l---~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------------~~~~ll~~l~~~ 141 (242)
T 2qk2_A 79 KCLALLAKGL---AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--------------SLEAQQESIVES 141 (242)
T ss_dssp HHHHHHHHHH---GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------------CHHHHHHHHHHH
Confidence 6666544322 222223222 467888888888888888888888876522 111346667788
Q ss_pred hhcccchhhHHHHHHHhh-hccccCCC-CCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccc
Q 002389 390 LQQLQSDYQLLAANLLLQ-LDTLENTT-GKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTF 455 (929)
Q Consensus 390 lq~~~~~~~~~~a~lllq-ld~l~~~~-~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~f 455 (929)
|+...+.-|--++.+|-. ++.. .|. ...-|=..-+..|+++|... +..+...|.++|..+...+
T Consensus 142 l~~~~~~vr~~~l~~l~~~l~~~-~~~~~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 142 LSNKNPSVKSETALFIARALTRT-QPTALNKKLLKLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTC-CGGGCCHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence 887777667666666665 3443 243 34456678888888888543 7778888889888877666
No 385
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.38 E-value=27 Score=35.98 Aligned_cols=184 Identities=12% Similarity=0.041 Sum_probs=97.1
Q ss_pred hhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhh-----hhcCCchhHHHHHHHHHHHhc-
Q 002389 288 SPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACL-----LQSGEKRAIMIALEFFHEILR- 361 (929)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~el~~- 361 (929)
.+..+..|+..++..+..-|..++..|-..-..+.. ..+++.+ +...+...|..|+.-|.++-.
T Consensus 52 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~----------~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~ 121 (280)
T 1oyz_A 52 GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC----------EDNVFNILNNMALNDKSACVRATAIESTAQRCKK 121 (280)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT----------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Confidence 356777888888888888888887777543211111 1122232 344556667777666666531
Q ss_pred -----------------cC----chhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcc
Q 002389 362 -----------------IP----RSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVF 420 (929)
Q Consensus 362 -----------------l~----r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~y 420 (929)
=+ |..+...|..+.+. ..+-.|+..|+...++-+-.++.-|-++. ..
T Consensus 122 ~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~ 189 (280)
T 1oyz_A 122 NPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK---ATIPLLINLLKDPNGDVRNWAAFAININK---------YD 189 (280)
T ss_dssp CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT---------CC
T ss_pred CCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHcCCCHHHHHHHHHHHHhhc---------cC
Confidence 11 11222333333322 23445555566555555555555554431 01
Q ss_pred hHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHhCCCCchhhhhhccCCcccchhhhhchhhh
Q 002389 421 TEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSWLQNMIRNFDWLDQSLQDRGVDSW 500 (929)
Q Consensus 421 reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~w 500 (929)
-+++++.|++.|+.. ++.++..|+.+|-.+| ++-+...|++... + ++.
T Consensus 190 ~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~-------~~~~~~~L~~~l~---------------------d---~~v 237 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK-------DKRVLSVLCDELK---------------------K---NTV 237 (280)
T ss_dssp CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT-------CGGGHHHHHHHHT---------------------S---SSC
T ss_pred cHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC-------CHhhHHHHHHHhc---------------------C---ccH
Confidence 256777777776543 5666777777776665 3334444444321 0 114
Q ss_pred hHHHHHHHHhcCh-hHHHHHHhhhhc
Q 002389 501 SSKIAKSIIEIGK-PIYYALEKGLKS 525 (929)
Q Consensus 501 ~~~~~~~l~~~g~-~~l~aL~~~l~s 525 (929)
.+.++.+|-..|. .++.+|.+.+.+
T Consensus 238 r~~a~~aL~~i~~~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 238 YDDIIEAAGELGDKTLLPVLDTMLYK 263 (280)
T ss_dssp CHHHHHHHHHHCCGGGHHHHHHHHTT
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHhc
Confidence 4455666766775 477777776654
No 386
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.35 E-value=17 Score=43.58 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=97.3
Q ss_pred CCEEEEEECC----CeEEEEECCCCCeeEEE-E-----eccCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEEccC
Q 002389 659 KGLLCSGFSD----GSIKMWDIKKQSAMLVW-D-----VKEHRKAVTSFSLFEPGESLLSGSADK------TIGVWQMVQ 722 (929)
Q Consensus 659 ~~~LaSGs~D----GtIrIWD~~~~~~~~i~-~-----l~gH~~~Vtslafspdg~~LaSgs~Dg------tIrIWDl~t 722 (929)
+..++.||.+ ..+.+||..+.+...+. . .......-..+.+..++..++.||.++ .+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 4466666653 46889999988765443 2 111111222333322667777777543 578899988
Q ss_pred CeEEEEEEecc-CCCeEEec-cCCCEEEEEecCC--eEEEEeCCCceeee-c------cCC-CeEEEEEe-C-CEEE-EE
Q 002389 723 RKLELIEVIAT-KEPIRKLD-TYGKTIFASTQGH--RMKVIDSSRTLKDI-Y------RSK-GIKSMSVV-Q-GKIY-IG 787 (929)
Q Consensus 723 g~~~~~~~~~h-~~~V~s~s-~~g~~L~sgs~Dg--~V~IWDl~~~~~~l-~------~~~-~V~sla~s-d-g~ll-sg 787 (929)
++......... .....+.. .++..++.|+.++ .+.+||.....-.. . ... .-.++.+. + ++++ .|
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G 557 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG 557 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence 76543321111 11111223 3677777776554 68899987432211 1 111 12234444 2 6644 45
Q ss_pred EC--C-----CcEEEEEccCCc------cceecccccccccCCCCeEEEEEcC-CceEEEEEec------CCCeEEEEEC
Q 002389 788 CM--D-----SSIQELAVSNNV------EREIKAPFKSWRLQSKPINSLVVYK-DWLYSASSSV------EGSNIKEWRR 847 (929)
Q Consensus 788 s~--D-----g~I~iwDl~tg~------~~~i~~~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~------dDgtI~IWDl 847 (929)
+. + +.+..||+.++. ...+... . .....-.+..... +.++++++.. ....+.+||.
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p--~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--P--LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--G--GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred CcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--C--CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 54 2 458899998866 2222110 0 0011112333344 5566554421 1246889998
Q ss_pred CCCCeE
Q 002389 848 HRKPQI 853 (929)
Q Consensus 848 ~~~~~i 853 (929)
.++.-.
T Consensus 634 ~t~~W~ 639 (695)
T 2zwa_A 634 LSETLT 639 (695)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 877543
No 387
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=84.18 E-value=40 Score=40.73 Aligned_cols=154 Identities=13% Similarity=0.089 Sum_probs=88.3
Q ss_pred hhhHhHHHHHhhcc-------ChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhc
Q 002389 289 PRVLCGLLDVARHQ-------NLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 289 ~~~~~~l~~~~~~~-------~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~ 361 (929)
..++..++..+... +..-|.+++..|-.+.+.-| ..+...+ ...+.+.|.+.+-+.|..|+..|..+..
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l-~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPV-LEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHH-HHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHHHH-HHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 44566666666432 23446666666655554333 1111111 1223445667788889999999999885
Q ss_pred cCc-hhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhc-cccCCCCCCcchHHHHHHHHHHHhccCChh
Q 002389 362 IPR-SSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLD-TLENTTGKSVFTEEAMQVILKAVASEESST 439 (929)
Q Consensus 362 l~r-~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld-~l~~~~~~s~yreea~~~~~~~l~~~~~~~ 439 (929)
-.+ ......+. ..+..|+.+++...+.-|--++-.|-++= .+.+.-....|-++.+..|+++|... ++
T Consensus 399 ~~~~~~~~~~l~--------~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~ 468 (861)
T 2bpt_A 399 GPDKVQRTYYVH--------QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PK 468 (861)
T ss_dssp SSCHHHHHHHHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HH
T ss_pred CCCHHHHHHHHH--------HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hH
Confidence 543 22223322 34566666666554444443433333332 22211112457899999999999653 88
Q ss_pred hhHHHHHHHHhcCcccc
Q 002389 440 MQLLSSFILSNIGGTFS 456 (929)
Q Consensus 440 ~q~~~~~~l~~l~g~fs 456 (929)
++..|+.||..+.-.+.
T Consensus 469 v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 469 VATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999988766553
No 388
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=83.67 E-value=18 Score=40.87 Aligned_cols=89 Identities=9% Similarity=-0.090 Sum_probs=64.7
Q ss_pred CCeEEEEECCCCCeEEEecCC----CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc------------EEEEEeC--
Q 002389 839 GSNIKEWRRHRKPQISIAPEK----GTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQ------------KVGRISA-- 900 (929)
Q Consensus 839 DgtI~IWDl~~~~~i~~l~~h----~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~------------~i~tl~~-- 900 (929)
|+.||.-++......+.+... -..|..+..+|+|.+||..+ +..|.|-.+..+. ..+++.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 678888887644444444332 23688899999999999886 6689998876321 1334442
Q ss_pred -----CCCeEEEEEc-----CCEEEEEECCCcEEEeec
Q 002389 901 -----GSKITSLLTA-----NDIVLCGTETGLIKGWIP 928 (929)
Q Consensus 901 -----h~~Vtsvs~d-----g~~LaSgs~DG~I~IWdi 928 (929)
..+|..+.|+ +..|++-..|+.|++||+
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl 156 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDI 156 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEET
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEc
Confidence 2459999997 569999999999999996
No 389
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.57 E-value=46 Score=40.20 Aligned_cols=311 Identities=9% Similarity=0.052 Sum_probs=147.7
Q ss_pred HHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCc-chhhhhhhHHhhHhh
Q 002389 105 ELLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASK-EETVIRASVSILTTI 183 (929)
Q Consensus 105 ~~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~-~~~v~~~~v~il~~~ 183 (929)
+....++..+-....+++-.- . .+...|+.+.+..- |. -.-|.++..|++.+.... ++.+.+.++.+|..+
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~~-~-~~~~~l~~i~~~~~--~~----~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 86 NARREVKNYVLHTLGTETYRP-S-SASQCVAGIACAEI--PV----NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHHHHHHHHHHHHTTTCCSSS-C-HHHHHHHHHHHHHG--GG----TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHH-H-HHHHHHHHHHHhhC--cc----cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 334445544444444443322 3 55556666654321 11 113667888888775543 788888899888877
Q ss_pred hhcc-hhhhhhhhhcCCCchHHHH----HHhhc-----chh-hH-HHHHhcCCCchhhhh----ccchhHHHHHHhcccc
Q 002389 184 ILAN-ESVIEDIKKKGLRLSDLAT----ALKRN-----VPE-AA-ILIYLIKPSPTEIKT----LELLPTLVEVICTSKL 247 (929)
Q Consensus 184 ~~~~-~~~~~~~~~~~~~~~~~~~----~lk~~-----~~~-~~-vl~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~ 247 (929)
...- ... + ...+..+.. .|+.. +-. |. .|-.++.--...+.. -.+++.+.+.+...+
T Consensus 158 ~~~~~~~~---~---~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~- 230 (876)
T 1qgr_A 158 CQDIDPEQ---L---QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD- 230 (876)
T ss_dssp HHHSCHHH---H---GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-
T ss_pred HHhcCHhh---H---HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-
Confidence 7531 110 1 111122222 22211 110 10 111111100111110 124444444332111
Q ss_pred ccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhcc------
Q 002389 248 YKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFD------ 321 (929)
Q Consensus 248 ~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d------ 321 (929)
.. -+.+++..+..++..... .+...+...++..++..+...+.+-|..+.+.+..+.+..
T Consensus 231 ---~~------vr~~a~~~l~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 231 ---TR------VRVAALQNLVKIMSLYYQ-----YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp ---HH------HHHHHHHHHHHHHHHSGG-----GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HH------HHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 00 135677777777764321 1111111255677777666555555788887777666542
Q ss_pred ------------CcchhHHHhhcC--ccchhhhhhc-------CCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCch
Q 002389 322 ------------GQCRKYLSEFTA--VAPLACLLQS-------GEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNI 380 (929)
Q Consensus 322 ------------~~cr~~ia~~~~--~~~~~~l~~~-------~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~ 380 (929)
..|.+++...++ ..+++++|.. .+.+.|.+|...|..|....... .+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~------------~~ 364 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD------------IV 364 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG------------GH
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh------------hH
Confidence 234444432211 1234444432 23345666666665554322111 11
Q ss_pred -hHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCccccc
Q 002389 381 -NILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFSW 457 (929)
Q Consensus 381 -~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs~ 457 (929)
..|..+..+|+...+..|--++..|-++---..|....-|-++.+..|+.+|.. .++.++..|+.+|-.++..+..
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCch
Confidence 123344445555545444444444433221001112223667788888888864 4688899999999888877654
No 390
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.49 E-value=24 Score=38.54 Aligned_cols=102 Identities=9% Similarity=0.107 Sum_probs=64.7
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEEEeccCCCeEEec----cCCCEEEEE--ecCCeEEEEeCCCceeeecc-------
Q 002389 704 ESLLSGSADKTIGVWQMVQRKLELIEVIATKEPIRKLD----TYGKTIFAS--TQGHRMKVIDSSRTLKDIYR------- 770 (929)
Q Consensus 704 ~~LaSgs~DgtIrIWDl~tg~~~~~~~~~h~~~V~s~s----~~g~~L~sg--s~Dg~V~IWDl~~~~~~l~~------- 770 (929)
..++.++.||.|.-.|..+|+...........++.... +.+..++.+ +.||.+..++..........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 36888999999999999999876655443212333221 123345554 58999999997643222211
Q ss_pred CCCeEE---EEE-------eCCEEEEEECCCcEEEEEccCCccce
Q 002389 771 SKGIKS---MSV-------VQGKIYIGCMDSSIQELAVSNNVERE 805 (929)
Q Consensus 771 ~~~V~s---la~-------sdg~llsgs~Dg~I~iwDl~tg~~~~ 805 (929)
..++.. ..+ .+|.+++|+.+|.+.-.|+.+|+..-
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 111221 011 47779999999999999999987644
No 391
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=83.47 E-value=57 Score=35.77 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=130.3
Q ss_pred CCEEEEEECCCeEEEEECCC-CC-----eeEEE---Eecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-Ce---
Q 002389 659 KGLLCSGFSDGSIKMWDIKK-QS-----AMLVW---DVKE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RK--- 724 (929)
Q Consensus 659 ~~~LaSGs~DGtIrIWD~~~-~~-----~~~i~---~l~g-H~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~--- 724 (929)
...++.-..||+|..|-... ++ ..... .+.. ....|..++- ...+.+.-..||.|..|-... |+
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 44566667788888885442 11 00011 1110 0113444442 334555566789998885432 11
Q ss_pred ------EEEEEEecc-CCCe--EEeccCCCEEEEEecCCeEEEEeCCC--c-----------eeeec--cCCCeEEEEEe
Q 002389 725 ------LELIEVIAT-KEPI--RKLDTYGKTIFASTQGHRMKVIDSSR--T-----------LKDIY--RSKGIKSMSVV 780 (929)
Q Consensus 725 ------~~~~~~~~h-~~~V--~s~s~~g~~L~sgs~Dg~V~IWDl~~--~-----------~~~l~--~~~~V~sla~s 780 (929)
......... ...+ .+++......+..+.||.|+.|-.+. . ...+. ....|..++..
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 111111111 1122 35666677888889999999996541 0 01111 12356677766
Q ss_pred CCEEEEEECCCcEEEEEccC-Ccc-----ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CC--
Q 002389 781 QGKIYIGCMDSSIQELAVSN-NVE-----REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KP-- 851 (929)
Q Consensus 781 dg~llsgs~Dg~I~iwDl~t-g~~-----~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~-- 851 (929)
....++...+|.|+.|-... ++. .....|..+.......+..++........+... +++.+..|-.+. ++
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~-~~G~v~~wG~n~~GqLG 246 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT-DDDTVWSWGDGDYGKLG 246 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE-TTTEEEEEECCGGGTTS
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc-cCCEEEEEeCCCCCCCC
Confidence 77777788899999997543 111 111112222222344566666543223333333 678999997542 11
Q ss_pred --------eEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC--------cEE---EEEeC--CCCeEEEEE
Q 002389 852 --------QISIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ--------QKV---GRISA--GSKITSLLT 909 (929)
Q Consensus 852 --------~i~~l~~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg--------~~i---~tl~~--h~~Vtsvs~ 909 (929)
....... ....|..++...+ +.+.-..||.|+.|-.... ... ..+.. ...|..++.
T Consensus 247 ~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~ 324 (389)
T 3kci_A 247 RGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT 324 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE
T ss_pred CCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe
Confidence 1111111 1224666665433 3334457999999964321 111 11111 134778887
Q ss_pred cCCEEEEEECCCcEEEe
Q 002389 910 ANDIVLCGTETGLIKGW 926 (929)
Q Consensus 910 dg~~LaSgs~DG~I~IW 926 (929)
...+.+.-+.||.|+.|
T Consensus 325 G~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 325 GSLHCVCCTEDGEVYTW 341 (389)
T ss_dssp CSSEEEEEETTCCEEEE
T ss_pred ccCeEEEECCCCCEEEe
Confidence 77777777899999998
No 392
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.45 E-value=16 Score=43.23 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=125.6
Q ss_pred cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhh-c-chhhHH-------HHHh
Q 002389 151 MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKR-N-VPEAAI-------LIYL 221 (929)
Q Consensus 151 ~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~-~-~~~~~v-------l~~l 221 (929)
+..|.=|..||+.|..+ .+++|.-...|-.-.+++...+|.++--..-++.+...++. | +..+.| |--|
T Consensus 162 l~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nL 239 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239 (651)
T ss_dssp HHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 55677778888888655 46666644444555567778899999999999999998877 4 334444 5566
Q ss_pred cCCCc---hhhhhccchhHHHHHHhccccccCcccccccCch-hh----HHHHHHHHHhccccc-cchhhhhhhchhhhH
Q 002389 222 IKPSP---TEIKTLELLPTLVEVICTSKLYKGKLESVRLTPP-AA----SLMIIEVLVTAFDYA-TNNMHLAAINSPRVL 292 (929)
Q Consensus 222 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~a----~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 292 (929)
++--+ .-..++..+|.|...++.+.+...|. ++ .+ ++.+++-|+++.... .+..|-.++..-|++
T Consensus 240 Lr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~------~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l 313 (651)
T 3grl_A 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS------AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLL 313 (651)
T ss_dssp HTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC------HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHH
T ss_pred HhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH------HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCH
Confidence 65543 33456788999988887544322222 33 23 344777777764331 233456666778888
Q ss_pred hHHHHHhhccChHHHH--HHHHHHHhhhhccCcchhHHHhhc-----Cccchhhh----hhcCC-chhHHHHHHHHHHHh
Q 002389 293 CGLLDVARHQNLEELI--SLATILVKCIQFDGQCRKYLSEFT-----AVAPLACL----LQSGE-KRAIMIALEFFHEIL 360 (929)
Q Consensus 293 ~~l~~~~~~~~~~e~~--~~~~~l~~c~~~d~~cr~~ia~~~-----~~~~~~~l----~~~~~-~~~~~~~~~~~~el~ 360 (929)
..|++-+-....-..+ .|...+-.-|+-......++|+.. +...++.+ +.+.+ -..|.+|...|--.+
T Consensus 314 ~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 314 QQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 8888887766554544 444444455666777778888653 23334454 33332 233555555554444
Q ss_pred ccC
Q 002389 361 RIP 363 (929)
Q Consensus 361 ~l~ 363 (929)
.=|
T Consensus 394 ~~N 396 (651)
T 3grl_A 394 YKN 396 (651)
T ss_dssp TTC
T ss_pred hCC
Confidence 333
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=83.30 E-value=60 Score=35.87 Aligned_cols=270 Identities=10% Similarity=0.035 Sum_probs=146.2
Q ss_pred CCEEEEEEeCCEEEEEECCCeEEEEECCCC-C--------eeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCC-CeEEEE
Q 002389 650 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQ-S--------AMLVWDVKE-HRKAVTSFSLFEPGESLLSGSAD-KTIGVW 718 (929)
Q Consensus 650 ~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~-~--------~~~i~~l~g-H~~~Vtslafspdg~~LaSgs~D-gtIrIW 718 (929)
..|..|+......+.-..||.|..|-.... + ......+.. ....|..++.. +.+.+.-..| +.|..|
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEEE
Confidence 456667666666666778999999965421 1 011112211 12356666643 2333333344 589999
Q ss_pred EccC-Ce---------EEEEEEec-cCCCeEEeccCCCEEEEEecCCeEEEEeCCC--ce-----------eeec--cCC
Q 002389 719 QMVQ-RK---------LELIEVIA-TKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TL-----------KDIY--RSK 772 (929)
Q Consensus 719 Dl~t-g~---------~~~~~~~~-h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~-----------~~l~--~~~ 772 (929)
-... |+ ........ ....|..++......++.+.+|.|+.|-.+. .+ ..+. ...
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 173 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI 173 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTC
T ss_pred cCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCC
Confidence 5322 11 11111111 2235777877778888889999999997541 10 1111 123
Q ss_pred CeEEEEEeCCEEEEEECCCcEEEEEccCCcc------ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 773 GIKSMSVVQGKIYIGCMDSSIQELAVSNNVE------REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 773 ~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~------~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
.|..++......++-..+|.++.|-...... .....|.++.......+..++........+ . ++|.++.|-
T Consensus 174 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l--~-~~G~v~~wG 250 (406)
T 4d9s_A 174 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV--S-YSGALYTYG 250 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEE--E-TTCCEEEEE
T ss_pred cEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEE--c-CCCCEEEee
Confidence 5667766677777778899999996543111 111112222222234566665544444333 2 578899997
Q ss_pred CCCC-Ce----------EEEec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-Cc--------E--EEEEe--CC
Q 002389 847 RHRK-PQ----------ISIAP-EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT-QQ--------K--VGRIS--AG 901 (929)
Q Consensus 847 l~~~-~~----------i~~l~-~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s-g~--------~--i~tl~--~h 901 (929)
.+.. ++ ...+. .....|..++.. ..+.+.-..||.|+.|-... ++ . -..+. ..
T Consensus 251 ~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 328 (406)
T 4d9s_A 251 WSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 328 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG
T ss_pred CCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC
Confidence 5422 10 11111 112346665543 33444445799999996432 11 0 11111 22
Q ss_pred CCeEEEEEcCCEEEEEECCCcEEEe
Q 002389 902 SKITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 902 ~~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
..|..++....+.+.-+.||.|+.|
T Consensus 329 ~~v~~va~G~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 329 QKVVQVSCGWRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CcEEEEEeCCCeEEEEeCCCCEEEe
Confidence 4588888777777778899999998
No 394
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=83.08 E-value=29 Score=44.38 Aligned_cols=189 Identities=7% Similarity=0.046 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccC----------------c
Q 002389 260 PAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDG----------------Q 323 (929)
Q Consensus 260 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~----------------~ 323 (929)
+.+|...++.+...+.. ... -.-+.++..++..+...+.+-|.+++..|..+++.-| .
T Consensus 350 R~~A~~~l~~l~~~~~~-----~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHE-----MLP-EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 423 (1230)
T ss_dssp HHHHHHHHHHHHTTCCT-----THH-HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCC
T ss_pred HHHHHHHHHHHHHhchh-----HHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccc
Confidence 56666677776653211 001 1123345566666765566667778777766665433 5
Q ss_pred chhHHHhhcCc--cchhhhhhcCCchhHHHHHHHHHHHhccCch-------h-hHHHHHHhhccCc-----hh-------
Q 002389 324 CRKYLSEFTAV--APLACLLQSGEKRAIMIALEFFHEILRIPRS-------S-AIDLLQRIHKEGN-----IN------- 381 (929)
Q Consensus 324 cr~~ia~~~~~--~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~-------~-~~~~l~~~~~~~~-----~~------- 381 (929)
|+..+...++. ..+++.|+......|..++..|.+++.-.+. . ...+++.+++.-. ..
T Consensus 424 ~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 424 PLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 77777776652 3455568888888899999999998874331 1 1123333333211 11
Q ss_pred ----------------HHHHHHHHhhcccchhhHHHHHHHhh-hccccC-----CCCCCcchHHHHHHHHHHHhcc-CCh
Q 002389 382 ----------------ILHILKLSLQQLQSDYQLLAANLLLQ-LDTLEN-----TTGKSVFTEEAMQVILKAVASE-ESS 438 (929)
Q Consensus 382 ----------------~mh~~l~~lq~~~~~~~~~~a~lllq-ld~l~~-----~~~~s~yreea~~~~~~~l~~~-~~~ 438 (929)
.+..|+.+++...+.-+--+...+-. ...+++ +....-|-++-+..++..|.+. .+.
T Consensus 504 ~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~ 583 (1230)
T 1u6g_C 504 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQ 583 (1230)
T ss_dssp HHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCH
T ss_pred HHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCH
Confidence 12223333333211111001111111 112233 3456678888999999999755 466
Q ss_pred hhhHHHHHHHHhcCcc
Q 002389 439 TMQLLSSFILSNIGGT 454 (929)
Q Consensus 439 ~~q~~~~~~l~~l~g~ 454 (929)
.++..|+++|-.|..+
T Consensus 584 ~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 584 EVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888887776543
No 395
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.93 E-value=53 Score=34.95 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=120.9
Q ss_pred EEeCCEEEEEE--CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--------------CeEEEEE
Q 002389 656 IYYKGLLCSGF--SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLFEPGESLLSGSAD--------------KTIGVWQ 719 (929)
Q Consensus 656 ~fs~~~LaSGs--~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafspdg~~LaSgs~D--------------gtIrIWD 719 (929)
++.+++|+-.. .++.|...+........+.. +. +-.++++|.+|+-+... ..|+..+
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-----~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-----DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-----EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC-----Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34567655443 35677777776654332221 11 33567899997765542 4677777
Q ss_pred ccCCeEEEEEEeccCCCeEEeccCCCEEEEEe--cC--CeEEEEeCCCce-eeeccCCCeEEEEEeCCEEEEEEC-CCcE
Q 002389 720 MVQRKLELIEVIATKEPIRKLDTYGKTIFAST--QG--HRMKVIDSSRTL-KDIYRSKGIKSMSVVQGKIYIGCM-DSSI 793 (929)
Q Consensus 720 l~tg~~~~~~~~~h~~~V~s~s~~g~~L~sgs--~D--g~V~IWDl~~~~-~~l~~~~~V~sla~sdg~llsgs~-Dg~I 793 (929)
++.++.... ...+...++++++.|+... .+ ..|...++++.. ..+..+ .+..+.+..+.++-.+. ...|
T Consensus 95 ~dg~~~~~l----~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-~~~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 95 RNGHGSTVL----DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-YLFTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp TTSCCCEEE----ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-CCCCSEEETTEEEEECTTTCCE
T ss_pred CCCCcceEe----ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-CceEeeEECCEEEEEeCCCceE
Confidence 766542221 1233446788999988876 23 456666666432 223222 22233444666665544 6778
Q ss_pred EEEEccCCccceecccccccccCCCCeEEEEEcCCceEEEEEe-cCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCC
Q 002389 794 QELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSS-VEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDF 872 (929)
Q Consensus 794 ~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S-~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg 872 (929)
...++.++....+. . .... ...+|++.++.-.. .++..|..-+++++.. ..+.. ..+ ..|+|++
T Consensus 170 y~~~l~g~~~~~l~------~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQSEALFY------D---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTEEEEEE------C---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEET
T ss_pred EEEECCCCCEEEEe------C---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECC
Confidence 88888765543331 1 1111 12334433332111 1224566666666553 23322 233 3478888
Q ss_pred CEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEcCCEEEEEE
Q 002389 873 IYLNYNSS--ASSLQIWLRGTQQKVGRISAGSKITSLLTANDIVLCGT 918 (929)
Q Consensus 873 ~~LaSgS~--DG~I~IWdl~sg~~i~tl~~h~~Vtsvs~dg~~LaSgs 918 (929)
.+|.-++. .+.|..-++.... ...+..+ .+..+++.+++|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~-~~~~i~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTG-FKELAKG-EFCNINVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCC-CEEEEES-CEEEEEECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCc-cEEeeCC-ccceEEEeCCEEEEEE
Confidence 88876542 3555555664332 2333222 3456666666555443
No 396
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.11 E-value=32 Score=41.24 Aligned_cols=194 Identities=7% Similarity=-0.006 Sum_probs=95.2
Q ss_pred CCCCEEEEEeCC----CeEEEEEccCCeEEEEE-E------eccCCCeEEecc--CCCEEEEEecC------CeEEEEeC
Q 002389 701 EPGESLLSGSAD----KTIGVWQMVQRKLELIE-V------IATKEPIRKLDT--YGKTIFASTQG------HRMKVIDS 761 (929)
Q Consensus 701 pdg~~LaSgs~D----gtIrIWDl~tg~~~~~~-~------~~h~~~V~s~s~--~g~~L~sgs~D------g~V~IWDl 761 (929)
.++..++.||.+ ..+.+||..+++..... . ............ ++..++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345555666643 35778888887765443 1 111111112223 55666666543 35778887
Q ss_pred CCceeeec----cCCCeEEEEE-eCCEE-EEEECCC--cEEEEEccCCccceecccccccccCCCCeEEEEEcC--CceE
Q 002389 762 SRTLKDIY----RSKGIKSMSV-VQGKI-YIGCMDS--SIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYK--DWLY 831 (929)
Q Consensus 762 ~~~~~~l~----~~~~V~sla~-sdg~l-lsgs~Dg--~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~--d~i~ 831 (929)
....-... ....-.+.+. .++++ +.|+.++ .+.+||..++.-..+..... ..........+.... +.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~-~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE-FFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG-GGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC-CCCcccceeEEEEeCCCCEEE
Confidence 74322211 1111223333 46774 4565543 68999998866544421000 000111112233232 4455
Q ss_pred EEEEecCC-----CeEEEEECCCCC------eEEEec--CCCCCeEEEEEecCCCEEEEEeC--------CCcEEEEECC
Q 002389 832 SASSSVEG-----SNIKEWRRHRKP------QISIAP--EKGTTIQAMAVVEDFIYLNYNSS--------ASSLQIWLRG 890 (929)
Q Consensus 832 ~~s~S~dD-----gtI~IWDl~~~~------~i~~l~--~h~~~V~slafSpdg~~LaSgS~--------DG~I~IWdl~ 890 (929)
++++...+ +.+..||+.+.. ...... .....-.+++...++++++.||. ...|.+||..
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 55443222 468899987766 111111 11111123333344777777774 3569999998
Q ss_pred CCcEE
Q 002389 891 TQQKV 895 (929)
Q Consensus 891 sg~~i 895 (929)
+.+..
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87654
No 397
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.76 E-value=21 Score=42.19 Aligned_cols=41 Identities=5% Similarity=0.031 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhh
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIK 195 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~ 195 (929)
+.++..+.. ++.+.++-|-++|+.-|..+...++..++.|+
T Consensus 141 ~~l~~~l~~-~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~ 181 (618)
T 1w63_A 141 RDLAGEVEK-LLKTSNSYLRKKAALCAVHVIRKVPELMEMFL 181 (618)
T ss_dssp HHHHHHHHH-HHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGG
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 344544444 34567889999998888888887777776665
No 398
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=80.96 E-value=95 Score=36.57 Aligned_cols=224 Identities=9% Similarity=0.021 Sum_probs=121.8
Q ss_pred EEEEEECCCeEEEEECCCCCeeEEEEec-cCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEEccCCeEEEEEEeccCC-Ce
Q 002389 661 LLCSGFSDGSIKMWDIKKQSAMLVWDVK-EHRKAVTSFSLFEPGESLLSG-SADKTIGVWQMVQRKLELIEVIATKE-PI 737 (929)
Q Consensus 661 ~LaSGs~DGtIrIWD~~~~~~~~i~~l~-gH~~~Vtslafspdg~~LaSg-s~DgtIrIWDl~tg~~~~~~~~~h~~-~V 737 (929)
+|+.+. .+.|+..++.......+ .+. ..-..+.+++|.+.+..|+-+ ...+.|+.++............+... .-
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~G 396 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDG 396 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEEc-ccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCc
Confidence 344433 45677778876543211 121 122457789999876665544 45788999998754332222112111 22
Q ss_pred EEeccCCCEEEEEe-cCCeEEEEeCCCceee-ec--cCCCeEEEEEe--CCEEEEEEC--CCcEEEEEccCCccceeccc
Q 002389 738 RKLDTYGKTIFAST-QGHRMKVIDSSRTLKD-IY--RSKGIKSMSVV--QGKIYIGCM--DSSIQELAVSNNVEREIKAP 809 (929)
Q Consensus 738 ~s~s~~g~~L~sgs-~Dg~V~IWDl~~~~~~-l~--~~~~V~sla~s--dg~llsgs~--Dg~I~iwDl~tg~~~~i~~~ 809 (929)
.++.+.++.++.+. ..+.|.+.++++.... +. .-.....+++. +|.++.... .+.|...++.......+.
T Consensus 397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-- 474 (619)
T 3s94_A 397 IAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-- 474 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--
T ss_pred eEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE--
Confidence 35666566666554 5578999988854332 22 23457888886 578776553 356666666543222221
Q ss_pred ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 810 FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 810 ~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
...-.....+++.++...+.-.....+.|..+++++...............++++..+ ...++-...+.|...|.
T Consensus 475 ----~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k 549 (619)
T 3s94_A 475 ----NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHK 549 (619)
T ss_dssp ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEES
T ss_pred ----eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEc
Confidence 1123455677777532222212224567888887665433333222223345666544 34444445677877787
Q ss_pred CCCc
Q 002389 890 GTQQ 893 (929)
Q Consensus 890 ~sg~ 893 (929)
.+|.
T Consensus 550 ~~g~ 553 (619)
T 3s94_A 550 RSAE 553 (619)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7763
No 399
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=80.85 E-value=45 Score=37.99 Aligned_cols=156 Identities=10% Similarity=0.099 Sum_probs=71.3
Q ss_pred hhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCc----
Q 002389 289 PRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPR---- 364 (929)
Q Consensus 289 ~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r---- 364 (929)
+.++..+...++..+..-|..++..|-...+.-|.. ++...+ ...++++|...+...|..|+..|..++..-.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l-~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 477 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKL-NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHH-HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH
Confidence 344555555555556666666665555444332221 000000 1234455666666667777666666554311
Q ss_pred --------------------hhhHHHHHHhhcc-Cc----hhHHHHHHHHhhcccchhhHHHHHHHhhhc-cccCCCCCC
Q 002389 365 --------------------SSAIDLLQRIHKE-GN----INILHILKLSLQQLQSDYQLLAANLLLQLD-TLENTTGKS 418 (929)
Q Consensus 365 --------------------~~~~~~l~~~~~~-~~----~~~mh~~l~~lq~~~~~~~~~~a~lllqld-~l~~~~~~s 418 (929)
..+...+..+-.. |. -..|+.|+..|+...++-|.-++..|-.+= -+++
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----- 552 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----- 552 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-----
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch-----
Confidence 1112222222111 00 023455555555555555555554443332 1111
Q ss_pred cchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 419 VFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 419 ~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
-+..+.+..++..|....+..++..|++||-.+.
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 1122333333444544457777777777776654
No 400
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=80.59 E-value=42 Score=39.63 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhhhhhccccccc-chhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHh
Q 002389 104 SELLEIIEKAISSLFFSGDLRK-CNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTT 182 (929)
Q Consensus 104 ~~~~~~l~~~i~~~~~s~~l~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~ 182 (929)
.++.+.|.+.|.++..|.+-.. ==+.|+..+.++++. + |+..- .+.+++.+.+.| ...++.|+.+++.+|.+
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~--p~~~~---~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-S--PDLVP---MGDWTSRVVHLL-NDQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-C--GGGCC---CCSCHHHHHHHT-TCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-C--hhhcC---chhHHHHHHHHh-CCCCccHHHHHHHHHHH
Confidence 4677777777777764322222 224678888899862 2 33221 146778887776 68899999999999999
Q ss_pred hhhcchh
Q 002389 183 IILANES 189 (929)
Q Consensus 183 ~~~~~~~ 189 (929)
+...++.
T Consensus 214 i~~~~~~ 220 (621)
T 2vgl_A 214 LAQKNPE 220 (621)
T ss_dssp HHHHCHH
T ss_pred HHHhChH
Confidence 9887765
No 401
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=80.36 E-value=69 Score=34.59 Aligned_cols=95 Identities=9% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEec----cCCCeE--EeccC---CCEEEEEecC------Ce
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVIA----TKEPIR--KLDTY---GKTIFASTQG------HR 755 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~~----h~~~V~--s~s~~---g~~L~sgs~D------g~ 755 (929)
-.....++|.|+|+.++ +..+|.|++++ +++........ ...... +++++ +..++++... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567899999998555 45679999998 45432221111 112233 35555 4566665442 56
Q ss_pred EEEEeCCCc----eee----ec--c--CCCeEEEEEe-CCEEEEEE
Q 002389 756 MKVIDSSRT----LKD----IY--R--SKGIKSMSVV-QGKIYIGC 788 (929)
Q Consensus 756 V~IWDl~~~----~~~----l~--~--~~~V~sla~s-dg~llsgs 788 (929)
|..|+.... ... +. . .+....++|. +|.++.+.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 777776531 111 21 1 1234577886 88877654
No 402
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=80.09 E-value=37 Score=44.09 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=114.2
Q ss_pred CCeEEEEEccCCeEEEEEEeccCCCeEE----eccCCCEEEEEecCCeEEEEeCC--CceeeeccCCCeEEEEEeCCEEE
Q 002389 712 DKTIGVWQMVQRKLELIEVIATKEPIRK----LDTYGKTIFASTQGHRMKVIDSS--RTLKDIYRSKGIKSMSVVQGKIY 785 (929)
Q Consensus 712 DgtIrIWDl~tg~~~~~~~~~h~~~V~s----~s~~g~~L~sgs~Dg~V~IWDl~--~~~~~l~~~~~V~sla~sdg~ll 785 (929)
..+|.|-|+.++... .+.|+.+ +.|..+.++.- .+.++.|+|+. ..++...-...|.-+.|-+...+
T Consensus 47 ~~~vvIidl~~~~~~------~rrpi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP------IRRPISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 119 (1630)
T ss_pred CceEEEEECCCCCCc------ccccccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCee
Confidence 346777777765432 1223332 45665544444 48899999997 44555555677888888766655
Q ss_pred EEECCCcEEEEEccCCccceecccccccccC----CCCeEEEEEcCCceEEE--EEecCC----CeEEEEECCCCCeEEE
Q 002389 786 IGCMDSSIQELAVSNNVEREIKAPFKSWRLQ----SKPINSLVVYKDWLYSA--SSSVEG----SNIKEWRRHRKPQISI 855 (929)
Q Consensus 786 sgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~----~~~I~sl~~~~d~i~~~--s~S~dD----gtI~IWDl~~~~~i~~ 855 (929)
.--++..|+.|++.+ .. .|.+.+..| +..|......++..+++ +.+..+ |.+.+|..+.+. .+.
T Consensus 120 ~lVT~~aVyHW~~~~-~s----~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ 193 (1630)
T 1xi4_A 120 ALVTDNAVYHWSMEG-ES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQP 193 (1630)
T ss_pred EEEcCCeEEEeccCC-CC----ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chh
Confidence 555678899999964 21 233444444 45566666677655543 333222 678888876554 445
Q ss_pred ecCCCCCeEEEEEe--cC-CCEEEEEeC---CCcEEEEECCCC---cEEE------EEeCCC----CeEEEEEc--CCEE
Q 002389 856 APEKGTTIQAMAVV--ED-FIYLNYNSS---ASSLQIWLRGTQ---QKVG------RISAGS----KITSLLTA--NDIV 914 (929)
Q Consensus 856 l~~h~~~V~slafS--pd-g~~LaSgS~---DG~I~IWdl~sg---~~i~------tl~~h~----~Vtsvs~d--g~~L 914 (929)
+.||.+....+... +. ...++.+.. .+.++|-++... .+.. .+-... -..++..+ -..+
T Consensus 194 iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~i 273 (1630)
T 1xi4_A 194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (1630)
T ss_pred hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEE
Confidence 66665544333332 11 122222221 268888886442 1110 011110 02223333 3477
Q ss_pred EEEECCCcEEEeec
Q 002389 915 LCGTETGLIKGWIP 928 (929)
Q Consensus 915 aSgs~DG~I~IWdi 928 (929)
+.-+.-|.|+++|+
T Consensus 274 y~itk~G~~~~~d~ 287 (1630)
T 1xi4_A 274 FLITKYGYIHLYDL 287 (1630)
T ss_pred EEEecCceEEEEec
Confidence 77888888888885
No 403
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=78.68 E-value=23 Score=45.34 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=140.5
Q ss_pred HHHHHhccCCCCceec-cchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcch
Q 002389 135 TTLYKMLNSKTGVKYD-MLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVP 213 (929)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~ 213 (929)
..+++.++.+ ...+. -..+.++..+++.|- +.+++|-++++..|..+...-.
T Consensus 28 ~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~------------------------- 80 (1230)
T 1u6g_C 28 NDLMTELQKD-SIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVK------------------------- 80 (1230)
T ss_dssp HHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSC-------------------------
T ss_pred HHHHHHHccc-ccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCC-------------------------
Confidence 4566666543 22222 345577888888875 7788888888888766553210
Q ss_pred hhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccc-cchhhhhhhchhhhH
Q 002389 214 EAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYA-TNNMHLAAINSPRVL 292 (929)
Q Consensus 214 ~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 292 (929)
+ +... .++|.|+..+...+.. -+.+|...|.++....... .+.. ...-..+.++
T Consensus 81 ~-------------~~~~-~i~~~Ll~~l~d~~~~----------vR~~a~~~L~~i~~~l~~~~~~~~-~~~~~~~~ll 135 (1230)
T 1u6g_C 81 E-------------YQVE-TIVDTLCTNMLSDKEQ----------LRDISSIGLKTVIGELPPASSGSA-LAANVCKKIT 135 (1230)
T ss_dssp H-------------HHHH-HHHHHHHHHTTCSSSH----------HHHHHHHHHHHHHHHCC-----CC-THHHHHHHHH
T ss_pred H-------------HHHH-HHHHHHHHHhcCCcHH----------HHHHHHHHHHHHHHhCCCcccccc-hHHHHHHHHH
Confidence 0 0111 4555566655432211 0456666777776653221 0110 1112246778
Q ss_pred hHHHHHhh-ccChHHHHHHHHHHHhhhhccCc-chhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHH
Q 002389 293 CGLLDVAR-HQNLEELISLATILVKCIQFDGQ-CRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDL 370 (929)
Q Consensus 293 ~~l~~~~~-~~~~~e~~~~~~~l~~c~~~d~~-cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~ 370 (929)
+.|++.++ .++.+-|..+..+|..+.+.-|. --.|+.+ -...++++|...+...|..|+.-|..+....... +
T Consensus 136 p~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~--ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~ 210 (1230)
T 1u6g_C 136 GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V 210 (1230)
T ss_dssp HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHH--HHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H
Confidence 88888887 47788888898888877654332 1123211 2345667777777788888888888777543211 1
Q ss_pred HHHhhccCchhHHHHHHHHhhcccc-hhhHHHHHHHhhh-ccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHH
Q 002389 371 LQRIHKEGNINILHILKLSLQQLQS-DYQLLAANLLLQL-DTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 448 (929)
Q Consensus 371 l~~~~~~~~~~~mh~~l~~lq~~~~-~~~~~~a~lllql-d~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l 448 (929)
--..|..|+.+|+.... +.+.-++..|-.+ .. -|.+..-|-++-+..+++.+... ++.+...+..++
T Consensus 211 --------~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l 279 (1230)
T 1u6g_C 211 --------FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ--AGHRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAF 279 (1230)
T ss_dssp --------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH--SSGGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHH
T ss_pred --------HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 11236667777765432 2222222222111 11 24455667788999999988744 444556666666
Q ss_pred HhcCcc
Q 002389 449 SNIGGT 454 (929)
Q Consensus 449 ~~l~g~ 454 (929)
-.+.-.
T Consensus 280 ~~l~~~ 285 (1230)
T 1u6g_C 280 ESFVRR 285 (1230)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 665544
No 404
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=76.40 E-value=15 Score=44.09 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcc-
Q 002389 109 IIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILAN- 187 (929)
Q Consensus 109 ~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~- 187 (929)
.+.+-+..|. |.+-.+-+ .|...++.+. .++..+-.+.+..+|.-+++-+.+..+++|.++|.-.|.-+...+
T Consensus 35 ~i~Pll~~L~-S~~~~~r~-~A~~al~~l~----~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLK-SPDAKSRT-TAAGAIANIV----QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHS-SSCCSHHH-HHHHHHHHHT----TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcC-CCCHHHHH-HHHHHHHHHH----cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3456666664 44455545 4665666664 234444456777788888888888899999999999988876543
Q ss_pred hhhhhhhhhcC
Q 002389 188 ESVIEDIKKKG 198 (929)
Q Consensus 188 ~~~~~~~~~~~ 198 (929)
..+...+.++|
T Consensus 109 ~d~~~~l~~~~ 119 (684)
T 4gmo_A 109 ADFCVHLYRLD 119 (684)
T ss_dssp HHHHHHHHHTT
T ss_pred chHHHHHHHcC
Confidence 45555555554
No 405
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=75.41 E-value=6.4 Score=40.19 Aligned_cols=212 Identities=10% Similarity=0.091 Sum_probs=128.0
Q ss_pred hhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhh
Q 002389 114 ISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIED 193 (929)
Q Consensus 114 i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~ 193 (929)
+...-.|.+-.+-. .++..+.++-+. .+++...- -..+++.|...|....+.+|.+++...|+.+...
T Consensus 20 l~~~l~s~~w~~R~-~a~~~L~~l~~~---~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~------- 87 (242)
T 2qk2_A 20 FYDKLEEKKWTLRK-ESLEVLEKLLTD---HPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKG------- 87 (242)
T ss_dssp HHHHHTCSSHHHHH-HHHHHHHHHHHH---CSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-------
T ss_pred HHhhhccCCHHHHH-HHHHHHHHHHcc---CCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------
Confidence 33333455555544 566677766543 12322111 2467777777665578888988888888887741
Q ss_pred hhhcCCCchHHHHHHhhcchhhHHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhc
Q 002389 194 IKKKGLRLSDLATALKRNVPEAAILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTA 273 (929)
Q Consensus 194 ~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~ 273 (929)
|. +....... .++|.+++.+..++.. . +.+|...|..++..
T Consensus 88 --------------l~--------------~~~~~~~~-~ilp~ll~~l~d~~~~----v------r~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 88 --------------LA--------------KRFSNYAS-ACVPSLLEKFKEKKPN----V------VTALREAIDAIYAS 128 (242)
T ss_dssp --------------HG--------------GGGHHHHH-HHHHHHHHGGGCCCHH----H------HHHHHHHHHHHHTT
T ss_pred --------------Hh--------------hhHHHHHH-HHHHHHHHHHcCCCHH----H------HHHHHHHHHHHHHc
Confidence 00 11111122 5677877777643321 1 46777777777653
Q ss_pred cccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcc---hhHHHhhcCccchhhhhhcCCchhHH
Q 002389 274 FDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQC---RKYLSEFTAVAPLACLLQSGEKRAIM 350 (929)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~c---r~~ia~~~~~~~~~~l~~~~~~~~~~ 350 (929)
.. . ..+++.++..++..+..-|..++.+|-.|+..-+.- ..|+..- ...++++|.-.....|.
T Consensus 129 ~~-------~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l--~p~l~~~l~D~~~~VR~ 194 (242)
T 2qk2_A 129 TS-------L-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLL--TTSLVKTLNEPDPTVRD 194 (242)
T ss_dssp SC-------H-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHH--HHHHHHHHTSSCHHHHH
T ss_pred CC-------H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHH--HHHHHHHhcCCChHHHH
Confidence 21 1 345667777888889999999999999998764421 2344322 34566788777888899
Q ss_pred HHHHHHHHHhccCchh-hHHHHHHhhccCchhHHHHHHHHhhccc
Q 002389 351 IALEFFHEILRIPRSS-AIDLLQRIHKEGNINILHILKLSLQQLQ 394 (929)
Q Consensus 351 ~~~~~~~el~~l~r~~-~~~~l~~~~~~~~~~~mh~~l~~lq~~~ 394 (929)
+|+.-+.+|...-+.. ...+|..|.. +.|-.+-.|+.++.
T Consensus 195 ~A~~~l~~l~~~vg~~~~~~~l~~L~~----~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 195 SSAEALGTLIKLMGDKAVTPLLADVDP----LKMAKIKECQEKAE 235 (242)
T ss_dssp HHHHHHHHHHHHHCHHHHGGGGTTSCH----HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Confidence 9998888887655543 4455554421 34555555555544
No 406
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=74.29 E-value=1.1e+02 Score=33.73 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=124.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeE----------EEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeC
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKL----------ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDS 761 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~----------~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl 761 (929)
.|..|+. .+.+.+.-..||.|..|=... |++ ...........|..++......++.+.||.|+.|-.
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 4665554 345566667799999996432 110 001111223456677777778888899999999975
Q ss_pred --C--Cce-----------eeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCCccc-----------------eeccc
Q 002389 762 --S--RTL-----------KDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVER-----------------EIKAP 809 (929)
Q Consensus 762 --~--~~~-----------~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~-----------------~i~~~ 809 (929)
+ +.+ ........|..++......++-..+|.|+.|-....... ....|
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p 233 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSC
T ss_pred CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCC
Confidence 3 111 111123457777766777777889999999975431110 00111
Q ss_pred ccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-C----------eEEEecCCCCCeEEEEEecCCCEEEEE
Q 002389 810 FKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-P----------QISIAPEKGTTIQAMAVVEDFIYLNYN 878 (929)
Q Consensus 810 ~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~----------~i~~l~~h~~~V~slafSpdg~~LaSg 878 (929)
..+.......+..+.......+.+ ..+++.+..|-.+.. + ...........|..++... .+.+.-
T Consensus 234 ~~v~~~~~~~v~~i~~g~~~~~~~--~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~al 309 (423)
T 3mvd_K 234 TQLIITRAKPFEAIWATNYCTFMR--ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVIL 309 (423)
T ss_dssp EEECCTTCCCEEEEEEETTEEEEE--ETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEEE
T ss_pred eEEeecCCccEEEEEECCcEEEEE--ECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEEE
Confidence 111112233455555443333222 126788888864321 0 0111111134566665443 344444
Q ss_pred eCCCcEEEEECCCC---------cEE---EEEeCC-CCeEEEEEcCCEEEEEECCCcEEEe
Q 002389 879 SSASSLQIWLRGTQ---------QKV---GRISAG-SKITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 879 S~DG~I~IWdl~sg---------~~i---~tl~~h-~~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
..||.|+.|-.... ... ..+..- ..|..|+....+-+.-+.||.|+.|
T Consensus 310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSW 370 (423)
T ss_dssp ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred eCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEE
Confidence 57999999964321 111 111111 2588888777776677899999998
No 407
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=73.28 E-value=36 Score=38.88 Aligned_cols=293 Identities=11% Similarity=0.065 Sum_probs=149.0
Q ss_pred HHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcch
Q 002389 109 IIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANE 188 (929)
Q Consensus 109 ~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~ 188 (929)
.+...+..|.+.+. +.-. .|+..+..++..+. | .-..+.++..|.+.+ +.+++|.+.+...|..+...-.
T Consensus 11 ~i~~l~~~l~s~~~-~~R~-~A~~~l~~i~~~~~--~----~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 11 PIAVLIDELRNEDV-QLRL-NSIKKLSTIALALG--V----ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHHTTCSCH-HHHH-HHHHTHHHHHHHSC--H----HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGT
T ss_pred cHHHHHHHhhcccH-HHHH-HHHHhHHHHHHHhC--H----HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccC
Confidence 35556666654432 3233 46666666664332 1 112344555555544 5677888888888776554210
Q ss_pred hhhhhhhhcCCCchHHHHHH----hhc---chhh--HHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCc
Q 002389 189 SVIEDIKKKGLRLSDLATAL----KRN---VPEA--AILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTP 259 (929)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l----k~~---~~~~--~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (929)
. ......+...| ... +-++ ..|..+....+.+...-.++|.+.+.....+. ..
T Consensus 81 ~--------~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~----------~~ 142 (588)
T 1b3u_A 81 G--------PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWF----------TS 142 (588)
T ss_dssp S--------GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSH----------HH
T ss_pred c--------HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCc----------HH
Confidence 0 01122222222 211 2222 23444444444444443567776665543211 12
Q ss_pred hhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhh
Q 002389 260 PAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLAC 339 (929)
Q Consensus 260 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~ 339 (929)
+.+|..++..+...... . .-+.++..+...+...+.+-|..++..|-.-.+.-|. ..+..+ =...+++
T Consensus 143 R~~a~~~l~~~~~~~~~----~-----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~--l~~~l~~ 210 (588)
T 1b3u_A 143 RTSACGLFSVCYPRVSS----A-----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-DNVKSE--IIPMFSN 210 (588)
T ss_dssp HHHHGGGHHHHTTTSCH----H-----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-HHHHHT--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH----H-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH-HhHHHH--HHHHHHH
Confidence 56666677776554321 1 1234556666666777888888888888755544332 111111 1223455
Q ss_pred hhhcCCchhHHHHHHHHHHHhccC-chhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCC
Q 002389 340 LLQSGEKRAIMIALEFFHEILRIP-RSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKS 418 (929)
Q Consensus 340 l~~~~~~~~~~~~~~~~~el~~l~-r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s 418 (929)
++...+...|..|+..|..+...- .....+ ..+..+..+++...+.-|-.++..|-++=-...| .
T Consensus 211 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-----------~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~ 276 (588)
T 1b3u_A 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEA-----------LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---E 276 (588)
T ss_dssp HHTCSCHHHHTTHHHHHHHHHHHSCHHHHHH-----------HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---H
T ss_pred HhcCCcHHHHHHHHHHHHHHHHhCCHHHHHH-----------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---c
Confidence 677777788888888887766432 111000 0122233333333333344444433332111111 2
Q ss_pred cchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCcccc
Q 002389 419 VFTEEAMQVILKAVASEESSTMQLLSSFILSNIGGTFS 456 (929)
Q Consensus 419 ~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~fs 456 (929)
.|.++.+..+++.|.. +++.++..|+.+|-.++..+.
T Consensus 277 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSC
T ss_pred cchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhC
Confidence 4677788888888764 366778888888877765543
No 408
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=72.82 E-value=51 Score=33.94 Aligned_cols=171 Identities=11% Similarity=0.104 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCch-HHHHHHhhcchhhHHHHHhcCCCchhhhhc
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLS-DLATALKRNVPEAAILIYLIKPSPTEIKTL 232 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~lk~~~~~~~vl~~l~~~~~~~~~~~ 232 (929)
..+++.|...|..-.+..|..++...|+.+.. ..+ .+.+. +. ..
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~---~l~------~~~f~~~y-------------------------~~- 103 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICD---KLK------TPGFSKDY-------------------------VS- 103 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---HHC------TTTSCHHH-------------------------HH-
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---hcc------cccccHHH-------------------------HH-
Confidence 36788888888777888888888888777652 111 01121 11 11
Q ss_pred cchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHHhhccChHHHHHHHH
Q 002389 233 ELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDVARHQNLEELISLAT 312 (929)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~ 312 (929)
.++|.++..+..+... -++|+.+.++.+....+. +..+ -.-..++..|+..++..+...|..++.
T Consensus 104 ~llp~ll~~l~dkk~~----------V~~aa~~al~~i~~~~~~--~~~~---~~l~~ll~~l~~~l~~k~~~vk~~al~ 168 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPS----------VIEAIRKALLTICKYYDP--LASS---GRNEDMLKDILEHMKHKTPQIRMECTQ 168 (249)
T ss_dssp HHHHHHHHGGGCCCHH----------HHHHHHHHHHHHHHHSCT--TCTT---CTTHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHH----------HHHHHHHHHHHHHHHccc--cccC---CcHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4678888777543211 136677777777664322 1111 001345677888888889999999999
Q ss_pred HHHhhhhccCcchhHHHhhc--C-ccchhhhhhcCCchhHHHHHHHHHHHhccCc-hhhHHHHHHh
Q 002389 313 ILVKCIQFDGQCRKYLSEFT--A-VAPLACLLQSGEKRAIMIALEFFHEILRIPR-SSAIDLLQRI 374 (929)
Q Consensus 313 ~l~~c~~~d~~cr~~ia~~~--~-~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r-~~~~~~l~~~ 374 (929)
.|.+|+++-+.-...+...+ . ...+.+++.-.+...|.+|+..|..+.+.-- +....++..+
T Consensus 169 ~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 169 LFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999998776434444444 2 3355668877788899999999998875433 3466676665
No 409
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=72.67 E-value=86 Score=34.15 Aligned_cols=108 Identities=9% Similarity=0.026 Sum_probs=59.8
Q ss_pred CCeEEEEEe-CCEEEEEEC-CCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC----ceEEEEEe-cCCCeEEE
Q 002389 772 KGIKSMSVV-QGKIYIGCM-DSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD----WLYSASSS-VEGSNIKE 844 (929)
Q Consensus 772 ~~V~sla~s-dg~llsgs~-Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d----~i~~~s~S-~dDgtI~I 844 (929)
...+.|++. +|.++++.. .|.|+.++..++....+.....++.........++++|+ +.+-++.+ ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 345677775 777777776 788888876544432221111122333556788999885 33333333 23456666
Q ss_pred EECCCC----------C-eEEEec-CCCCCeEEEEEecCCCEEEEEe
Q 002389 845 WRRHRK----------P-QISIAP-EKGTTIQAMAVVEDFIYLNYNS 879 (929)
Q Consensus 845 WDl~~~----------~-~i~~l~-~h~~~V~slafSpdg~~LaSgS 879 (929)
|....+ + ++..+. +....-..|+|.|||.+.++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 665431 1 112222 1222456799999998877755
No 410
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=69.16 E-value=12 Score=39.60 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=59.1
Q ss_pred hchhh-hHhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCc---cchhhhhhcCCchhHHHHHHHHHHHhc
Q 002389 286 INSPR-VLCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAV---APLACLLQSGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 286 ~~~~~-~~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~---~~~~~l~~~~~~~~~~~~~~~~~el~~ 361 (929)
+.+|. +.+.++..+...|..-|..+...|..+++.-|.=. .-.. ..+..+|-..+...|.+|++-+.|+-+
T Consensus 162 v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 162 VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33444 78889899999999999999999999999999751 2234 567778888899999999999998875
Q ss_pred cC
Q 002389 362 IP 363 (929)
Q Consensus 362 l~ 363 (929)
.-
T Consensus 237 ~~ 238 (266)
T 2of3_A 237 FE 238 (266)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 411
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=69.00 E-value=87 Score=33.80 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=52.5
Q ss_pred eEEEEEe-CCE-EEEEECCCcEEEEEccCCccceecccccccccCCCCeEEEEEcCC----ceEEEEEecC------CCe
Q 002389 774 IKSMSVV-QGK-IYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKPINSLVVYKD----WLYSASSSVE------GSN 841 (929)
Q Consensus 774 V~sla~s-dg~-llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d----~i~~~s~S~d------Dgt 841 (929)
...|++. +|. ++++...|.|++++........+................++++|+ +..-++.+.. ...
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~ 99 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA 99 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence 4566665 677 777777777777774321111111000111122345678888874 3333333221 125
Q ss_pred EEEEECCCC--Ce------EEEec---CCCCCeEEEEEecCCCEEEEEeC
Q 002389 842 IKEWRRHRK--PQ------ISIAP---EKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 842 I~IWDl~~~--~~------i~~l~---~h~~~V~slafSpdg~~LaSgS~ 880 (929)
|..|+.... .. +..+. .....-..++|.|||.+.++.+.
T Consensus 100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 666665432 11 11111 11123467999999976666543
No 412
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=68.67 E-value=34 Score=35.22 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=65.6
Q ss_pred CeEEEEEe-CCEEEEEECCCcEEEEEccCCccceecccccccccCCCC--------eEEEEEcCCceEEEEEecCCCeEE
Q 002389 773 GIKSMSVV-QGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP--------INSLVVYKDWLYSASSSVEGSNIK 843 (929)
Q Consensus 773 ~V~sla~s-dg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~--------I~sl~~~~d~i~~~s~S~dDgtI~ 843 (929)
.++.++|+ +|.+++. .+|.++-.+..++... .|...... ...+.+.+++.+-++ + ||.|+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-------~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~--dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-------NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S--KDKLY 110 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-------CHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E--TTEEE
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcc-------cccccccEecccccccceEEEECCCCCEEEe-C--CCEEE
Confidence 56788998 8888888 8888777776542221 11111222 367888888887666 3 48888
Q ss_pred EEECCCCCeE------EEe-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 844 EWRRHRKPQI------SIA-PEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 844 IWDl~~~~~i------~~l-~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
-++..+.... ..+ .+-=..+..+.|.|+|.+.+.. |+.++-+...
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPP 162 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCC
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCC
Confidence 8876332111 111 1111368999999999988777 7876544433
No 413
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=67.85 E-value=21 Score=36.94 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=75.8
Q ss_pred ccchhhhhhcCCchhHHHHHHHHHHHhcc-----CchhhHHHHHHhh------cc-CchhHHH---HHHHHhhcccchhh
Q 002389 334 VAPLACLLQSGEKRAIMIALEFFHEILRI-----PRSSAIDLLQRIH------KE-GNINILH---ILKLSLQQLQSDYQ 398 (929)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~el~~l-----~r~~~~~~l~~~~------~~-~~~~~mh---~~l~~lq~~~~~~~ 398 (929)
+.-+++|||.++...+.+|+..+-|+++- +|+...++|..|- +| -.+..|- +||-=.+-.|....
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34467899999999999999999999986 2334555555443 22 3344444 44433333333444
Q ss_pred HHHHHHHhhhccccCCCCCCcchHHHHHHH---------------HHHHhccCChhhhHHHHHHHHhcCc
Q 002389 399 LLAANLLLQLDTLENTTGKSVFTEEAMQVI---------------LKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 399 ~~~a~lllqld~l~~~~~~s~yreea~~~~---------------~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
-++..| .|++. ++.-+-||||.|.+ +-+|=.|.+..+|..+-++|++++|
T Consensus 115 Kl~~aL---~dlik--~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 115 KAAKTL---VSLLE--SPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHHHH---HHHTT--SCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHH---HHHhc--CCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 444444 36665 67778899998753 4444566788888888888888775
No 414
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=67.09 E-value=1.5e+02 Score=32.47 Aligned_cols=228 Identities=9% Similarity=0.015 Sum_probs=125.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-CeE----------EEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEe
Q 002389 692 KAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RKL----------ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVID 760 (929)
Q Consensus 692 ~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~~----------~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWD 760 (929)
..|..++-. +.+.+.-..||.|..|-... |++ ...........|..++......++.+.||.|+.|-
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEee
Confidence 456666643 34445556789999996532 110 00001122346777777777888889999999997
Q ss_pred C--C--Cc------------eeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEccCC-ccce----------------ec
Q 002389 761 S--S--RT------------LKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAVSNN-VERE----------------IK 807 (929)
Q Consensus 761 l--~--~~------------~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg-~~~~----------------i~ 807 (929)
. + +. ...+.....|..++.-....++-..+|.|+.|-.... +... ..
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 216 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLL 216 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHH
T ss_pred CCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccc
Confidence 5 2 11 1111223456666666667777788999999976432 1100 01
Q ss_pred cccccccc-----CCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-C----------eEEEecC---CCCCeEEEEE
Q 002389 808 APFKSWRL-----QSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-P----------QISIAPE---KGTTIQAMAV 868 (929)
Q Consensus 808 ~~~~~~~~-----~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~----------~i~~l~~---h~~~V~slaf 868 (929)
.|..+... ....|..++......+.+. ++|.++.|-.+.. + ....+.. ....|..++.
T Consensus 217 ~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt---~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 217 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS---HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp SCEECCCBCSSCCSBCCEEEEEEETTEEEEEE---TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE
T ss_pred cCceEeeccccccCCccEEEEEeCCCEEEEEe---CCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec
Confidence 11101000 2245666665555444433 5789999976431 1 0111111 1123666654
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC------C---cE--E-EEEeCCCCeEEEEEcCCEEEEEECCCcEEEe
Q 002389 869 VEDFIYLNYNSSASSLQIWLRGT------Q---QK--V-GRISAGSKITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 869 Spdg~~LaSgS~DG~I~IWdl~s------g---~~--i-~tl~~h~~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
.. .+.+.-..||.|+.|-... + .. . ..+..-..|..|+....+.+.-+.||.|+.|
T Consensus 294 G~--~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 294 GQ--HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAW 361 (413)
T ss_dssp CS--SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEE
T ss_pred cc--ceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEe
Confidence 43 3344445789999996432 1 11 1 1112223588888777777778899999998
No 415
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=66.93 E-value=23 Score=40.05 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=49.4
Q ss_pred CCCCEEEEEEe-----CCEEEEEECCCeEEEEECCCCCeeEEEEec---------cCCCcEEEEEEcCCCCEEEEEe--C
Q 002389 648 CSGAVTALIYY-----KGLLCSGFSDGSIKMWDIKKQSAMLVWDVK---------EHRKAVTSFSLFEPGESLLSGS--A 711 (929)
Q Consensus 648 H~~~Vtsl~fs-----~~~LaSGs~DGtIrIWD~~~~~~~~i~~l~---------gH~~~Vtslafspdg~~LaSgs--~ 711 (929)
...+|..+.|+ +..|++=..|++|++||+.....++. .+. .+...|.+++|.+++-.|+..+ .
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~ 201 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTE 201 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTT
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCC
Confidence 46889999998 44899999999999999986433333 332 2335688999988766566544 6
Q ss_pred CCeEEE
Q 002389 712 DKTIGV 717 (929)
Q Consensus 712 DgtIrI 717 (929)
.|.|.-
T Consensus 202 ~GDIYA 207 (452)
T 3pbp_A 202 GGDIFA 207 (452)
T ss_dssp SCEEEE
T ss_pred CCCEEE
Confidence 666543
No 416
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.63 E-value=2.5e+02 Score=34.81 Aligned_cols=38 Identities=26% Similarity=0.185 Sum_probs=34.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 862 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888899999999999999999999999998875
No 417
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=65.18 E-value=50 Score=38.53 Aligned_cols=124 Identities=10% Similarity=0.027 Sum_probs=63.3
Q ss_pred HHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHH
Q 002389 218 LIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLD 297 (929)
Q Consensus 218 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (929)
|.-|-+-...++.+ .++|.+.+.+...+.+ - -++|+..+....-.+-| .+ ...+++..|..
T Consensus 107 L~~L~~i~~~~~~~-~l~~~l~~~L~d~~~~-V--------Rk~A~~al~~i~~~~p~------~~---~~~~~~~~l~~ 167 (591)
T 2vgl_B 107 VRTMGCIRVDKITE-YLCEPLRKCLKDEDPY-V--------RKTAAVCVAKLHDINAQ------MV---EDQGFLDSLRD 167 (591)
T ss_dssp HHHHHTCCSGGGHH-HHHHHHHHHSSCSCHH-H--------HHHHHHHHHHHHHSSCC------CH---HHHHHHHHHHH
T ss_pred HHHHHcCChHHHHH-HHHHHHHHHcCCCChH-H--------HHHHHHHHHHHHhhChh------hc---ccccHHHHHHH
Confidence 33443434556666 5777777777644433 1 03444444433321111 11 11356777877
Q ss_pred HhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHh
Q 002389 298 VARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEIL 360 (929)
Q Consensus 298 ~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~ 360 (929)
.+...+..-+.+|+..|..+.+.+...+.+.-..-....++..|...+.-.+..++++|..+.
T Consensus 168 lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230 (591)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC
T ss_pred HhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC
Confidence 888778888889988888776666543200000000123344443344444455555554443
No 418
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=64.29 E-value=1.7e+02 Score=32.08 Aligned_cols=186 Identities=8% Similarity=-0.049 Sum_probs=105.2
Q ss_pred CCeEEeccCCCEEEEEecCCeEEEEeCCC--c-------------eeeeccCCCeEEEEEeCCEEEEEECCCcEEEEEc-
Q 002389 735 EPIRKLDTYGKTIFASTQGHRMKVIDSSR--T-------------LKDIYRSKGIKSMSVVQGKIYIGCMDSSIQELAV- 798 (929)
Q Consensus 735 ~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~-------------~~~l~~~~~V~sla~sdg~llsgs~Dg~I~iwDl- 798 (929)
..|..+...+.+.+..+.||.|+.|-.+. . ...+.....|..++......++-..||.|+.|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence 34677887888888999999999996541 1 0111113456667666777777889999999985
Q ss_pred -c-CCccc-----eecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-C-------------------
Q 002389 799 -S-NNVER-----EIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-P------------------- 851 (929)
Q Consensus 799 -~-tg~~~-----~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~------------------- 851 (929)
. .++.. ....|... .....|..++........+ . ++|.|+.|-.+.. +
T Consensus 155 ~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~G~~hs~al--t-~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 155 RDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLVIL--T-TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECSSSEEESBTTBCEEEEEES--STTCCEEEEEECSSEEEEE--E-TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred CCCCCCcCcCCCCCCceeeEe--cCCCcEEEEecCCCeEEEE--e-cCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 2 22211 01111111 1234566666554444333 3 5788999964321 1
Q ss_pred ---eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----------cE-EEEEe-CCCCeEEEEEcCCEEEE
Q 002389 852 ---QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----------QK-VGRIS-AGSKITSLLTANDIVLC 916 (929)
Q Consensus 852 ---~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg----------~~-i~tl~-~h~~Vtsvs~dg~~LaS 916 (929)
+..........|..++.... ..++.-..||.|+.|-.... .. ..... ....|..++....+.+.
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~a 308 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVI 308 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEE
T ss_pred ccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEE
Confidence 11111112234566555422 22233357899999963321 11 11111 12458888877777777
Q ss_pred EECCCcEEEe
Q 002389 917 GTETGLIKGW 926 (929)
Q Consensus 917 gs~DG~I~IW 926 (929)
-+.||.|+.|
T Consensus 309 lt~~G~v~~w 318 (423)
T 3mvd_K 309 LTTDLKCSVV 318 (423)
T ss_dssp EETTCCEEEE
T ss_pred EeCCCcEEEE
Confidence 8889999988
No 419
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.72 E-value=1.9e+02 Score=31.70 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=122.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccC-Ce---------EEEEEEec-cCCCeEEeccCCCEEEEEecCC-eEEE
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQ-RK---------LELIEVIA-TKEPIRKLDTYGKTIFASTQGH-RMKV 758 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~t-g~---------~~~~~~~~-h~~~V~s~s~~g~~L~sgs~Dg-~V~I 758 (929)
...|..++. .+.+.+.-..||.|..|=... |+ ........ ....|..++....+.+....++ .|+.
T Consensus 15 ~~~v~~ia~--G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISA--GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEE--CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEec--CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 345666654 334444556688888885432 11 11111111 1235667776666666666664 9999
Q ss_pred EeCCC--c-----------eeeec--cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCcc------ceecccccccccCC
Q 002389 759 IDSSR--T-----------LKDIY--RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE------REIKAPFKSWRLQS 817 (929)
Q Consensus 759 WDl~~--~-----------~~~l~--~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~------~~i~~~~~~~~~~~ 817 (929)
|-.+. . ...+. ....|..++.-....++-..+|.|+.|-...... .....|.++.....
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 172 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC
Confidence 96441 0 00111 1335777777677777888999999997543211 11111212222223
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCC-C----------eEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEE
Q 002389 818 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRK-P----------QISIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQ 885 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~-~----------~i~~l~~-h~~~V~slafSpdg~~LaSgS~DG~I~ 885 (929)
..|..++........+ . ++|.++.|-.... + ....... ....|..++.. ..+.+.-..||.|+
T Consensus 173 ~~i~~va~G~~hs~al--t-~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~ 247 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAV--T-EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALY 247 (406)
T ss_dssp CCEEEEEECSSEEEEE--E-TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEE
T ss_pred CcEEEEecCCCeEEEE--e-CCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEE
Confidence 4566666555444333 3 6789999974321 1 0111111 12356665544 33444455799999
Q ss_pred EEECCCC-cE---------E-EEEeC--CCCeEEEEEcCCEEEEEECCCcEEEe
Q 002389 886 IWLRGTQ-QK---------V-GRISA--GSKITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 886 IWdl~sg-~~---------i-~tl~~--h~~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
.|-.... +. . ..+.. ...|..++-...+.+.-+.||.|+.|
T Consensus 248 ~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 248 TYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 301 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred EeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEe
Confidence 9964321 11 1 11111 12377777766777777889999988
No 420
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=61.71 E-value=1.8e+02 Score=31.55 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=128.1
Q ss_pred CEEEEEEeCCEEEEEECCCeEEEEECCCC---------CeeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 002389 651 AVTALIYYKGLLCSGFSDGSIKMWDIKKQ---------SAMLVWDVKE-HRKAVTSFSLFEPGESLLSGSADKTIGVWQM 720 (929)
Q Consensus 651 ~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~---------~~~~i~~l~g-H~~~Vtslafspdg~~LaSgs~DgtIrIWDl 720 (929)
.|..|+......+.-..||.|..|-.... .......+.. ....+..++.+....+.+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 45556555667777788999999965421 1011112221 2234555667666677666788999999954
Q ss_pred cC-Ce---------EEEEEEec-cCCCeEEeccCCCEEEEEecCCeEEEEeCCC--c-----------eeeec--cCCCe
Q 002389 721 VQ-RK---------LELIEVIA-TKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--T-----------LKDIY--RSKGI 774 (929)
Q Consensus 721 ~t-g~---------~~~~~~~~-h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~-----------~~~l~--~~~~V 774 (929)
.. |+ ........ ....|..+.......++.+.+|.|+.|-.+. . ...+. ....|
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v 213 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 213 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence 32 11 11111111 1225777777778888889999999997541 0 01111 13346
Q ss_pred EEEEEe--CCEEEEEECCCcEEEEEccCCcc------ceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEE
Q 002389 775 KSMSVV--QGKIYIGCMDSSIQELAVSNNVE------REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWR 846 (929)
Q Consensus 775 ~sla~s--dg~llsgs~Dg~I~iwDl~tg~~------~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWD 846 (929)
..++.. +...++-..||.|+.|-...... .....|.++-......+..+.........+ . ++|.++.|-
T Consensus 214 ~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~al--t-~~G~v~~wG 290 (389)
T 3kci_A 214 VDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL--T-KSGAVYTWG 290 (389)
T ss_dssp EEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEE--E-TTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEE--e-CCCeEEEEe
Confidence 666654 34567778899999996543111 111112222122233455665554444433 2 678999997
Q ss_pred CCCC-C----------eEEEecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 847 RHRK-P----------QISIAPE-KGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 847 l~~~-~----------~i~~l~~-h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
.+.. + ....... ....|..++... ...+.-..||.|+.|-..
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 5421 1 0111111 223466665543 344445689999999754
No 421
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=56.89 E-value=2.1e+02 Score=30.72 Aligned_cols=223 Identities=10% Similarity=0.036 Sum_probs=107.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEEe----ccCCCeE--EeccC---CCEEEEEec----C----
Q 002389 691 RKAVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEVI----ATKEPIR--KLDTY---GKTIFASTQ----G---- 753 (929)
Q Consensus 691 ~~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~~----~h~~~V~--s~s~~---g~~L~sgs~----D---- 753 (929)
-.....++|.|+|+. +.+..+|.|+++| .+++ ...... ....... ++.++ +..++++.. +
T Consensus 28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRY-LVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEE-EEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeE-EEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345788999999974 4456679999987 3554 221111 1112233 34554 456665543 2
Q ss_pred CeEEEEeCCCc------eee----ecc--CCCeEEEEEe-CCEEEEEECC--------------CcEEEEEccCCcccee
Q 002389 754 HRMKVIDSSRT------LKD----IYR--SKGIKSMSVV-QGKIYIGCMD--------------SSIQELAVSNNVEREI 806 (929)
Q Consensus 754 g~V~IWDl~~~------~~~----l~~--~~~V~sla~s-dg~llsgs~D--------------g~I~iwDl~tg~~~~i 806 (929)
+.|..|+.... ... +.. .+....++|. +|.++.+..+ |.|..++.... . ..
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~-p~ 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-P-PA 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-C-CT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-C-CC
Confidence 56777776532 111 111 2234567776 7786665322 34444444321 0 00
Q ss_pred cc---cccccccCCCCeEEEEEcC-CceEEEEEecCC--CeEEEEECCC----------------CCeEEEecCCCCCeE
Q 002389 807 KA---PFKSWRLQSKPINSLVVYK-DWLYSASSSVEG--SNIKEWRRHR----------------KPQISIAPEKGTTIQ 864 (929)
Q Consensus 807 ~~---~~~~~~~~~~~I~sl~~~~-d~i~~~s~S~dD--gtI~IWDl~~----------------~~~i~~l~~h~~~V~ 864 (929)
.. ...+|...-.....+.+++ ++...++-...+ ..|.+..... ...+..+........
T Consensus 183 ~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 00 0011111112234566665 333222221111 1233222100 011222211223577
Q ss_pred EEEEe-------cCCCEEEEEeCCCcEEEEECCCC-cEE--EEEeC--CCCeEEEEEc--CCEEEEEE
Q 002389 865 AMAVV-------EDFIYLNYNSSASSLQIWLRGTQ-QKV--GRISA--GSKITSLLTA--NDIVLCGT 918 (929)
Q Consensus 865 slafS-------pdg~~LaSgS~DG~I~IWdl~sg-~~i--~tl~~--h~~Vtsvs~d--g~~LaSgs 918 (929)
.++|. .+|.++++.-..+.|...++... +.. ..+-. ...+..++++ |.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 88883 57777777777788888887753 332 23332 2458888765 65555543
No 422
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=55.22 E-value=46 Score=30.14 Aligned_cols=86 Identities=16% Similarity=0.018 Sum_probs=53.9
Q ss_pred cchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCC
Q 002389 335 APLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENT 414 (929)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~ 414 (929)
.+++++|...+...|..|+..|..+- + -.....|+..|+...+.-|--++.-|-++.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~---------------~---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----- 101 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ---------------D---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----- 101 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC---------------S---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 56667777777777777766655432 1 122344445555555555555665555442
Q ss_pred CCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHh
Q 002389 415 TGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSN 450 (929)
Q Consensus 415 ~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~ 450 (929)
.++|++.|++.|+ .+++.++..|+.||-.
T Consensus 102 ------~~~a~~~L~~~l~-d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 ------GERVRAAMEKLAE-TGTGFARKVAVNYLET 130 (131)
T ss_dssp ------SHHHHHHHHHHTT-SCCTHHHHHHHHHGGG
T ss_pred ------cHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 3688999999886 3467788888887743
No 423
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.20 E-value=1.6e+02 Score=36.58 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEE
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIE 729 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~ 729 (929)
.|.+++..++..+++|-+.|+++|+|++.++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677888888889999999999999999999876544
No 424
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=47.27 E-value=52 Score=36.08 Aligned_cols=95 Identities=9% Similarity=0.124 Sum_probs=52.2
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHHHHHhhhc---cccC
Q 002389 337 LACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAANLLLQLD---TLEN 413 (929)
Q Consensus 337 ~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld---~l~~ 413 (929)
+-+++...+...-..|+.+|+|+-..+|....+++..+.+.|..+ |++-..|+++= .-+|
T Consensus 181 l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~-----------------~~~q~~llr~l~~~~~~d 243 (355)
T 3tjz_B 181 AQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKS-----------------PFAYCMMIRVASRQLEDE 243 (355)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSC-----------------HHHHHHHHHHHTCC----
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcC-----------------hHHHHHHHHHHHHhcccc
Confidence 344566666666678999999998888877778888877654322 23333333211 1111
Q ss_pred -CCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcCc
Q 002389 414 -TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIGG 453 (929)
Q Consensus 414 -~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g 453 (929)
|. -.+.-++.|...|++. ++.+...|+++|+.|..
T Consensus 244 ~~~----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 244 DGS----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPG 279 (355)
T ss_dssp -----------------CCCCCS-SHHHHHHHHHHHTC---
T ss_pred chh----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccC
Confidence 21 2233445566666544 88899999999999854
No 425
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=46.87 E-value=70 Score=32.86 Aligned_cols=100 Identities=8% Similarity=-0.084 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCceEEEEEecCCCeEEEEECCCCCeE------EEec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002389 818 KPINSLVVYKDWLYSASSSVEGSNIKEWRRHRKPQI------SIAP--EKGTTIQAMAVVEDFIYLNYNSSASSLQIWLR 889 (929)
Q Consensus 818 ~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~~~~i------~~l~--~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl 889 (929)
..+..+++||++.+-+. + ++.++-.+..+.... +.+- +-. ...++.|.|+|.+.++ .||.|+-++.
T Consensus 41 ~~~~~laf~P~G~LYaV-~--~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-L--NDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE-e--CCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 35668999998775444 3 456666665442211 1110 111 1478999999998888 4699988875
Q ss_pred CCCcE------EEEEeCC--CCeEEEEEcCC-EEEEEECCCcEE
Q 002389 890 GTQQK------VGRISAG--SKITSLLTAND-IVLCGTETGLIK 924 (929)
Q Consensus 890 ~sg~~------i~tl~~h--~~Vtsvs~dg~-~LaSgs~DG~I~ 924 (929)
.+... -..+-.+ ..+..+.++++ .|.... ||.++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 43211 1122222 23777887744 555555 88754
No 426
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=45.26 E-value=4.3e+02 Score=30.90 Aligned_cols=242 Identities=8% Similarity=-0.003 Sum_probs=129.8
Q ss_pred EEEEEE-CCCeEEEEECCCCCeeEEEEeccCCCcEEEEEEc--CCCCEEEEEeCC-------CeEEEEEccCCeEEEE--
Q 002389 661 LLCSGF-SDGSIKMWDIKKQSAMLVWDVKEHRKAVTSFSLF--EPGESLLSGSAD-------KTIGVWQMVQRKLELI-- 728 (929)
Q Consensus 661 ~LaSGs-~DGtIrIWD~~~~~~~~i~~l~gH~~~Vtslafs--pdg~~LaSgs~D-------gtIrIWDl~tg~~~~~-- 728 (929)
+|+.-. .+..|-.-+++..++..+.++ .....+.++.|- |+..|++.++.. |.. ..++..+....
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~i-Pn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITV-PNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-TTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeC-CCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEE
Confidence 666665 567888889998887767766 345678999886 788888877753 321 11111110000
Q ss_pred EEeccCCCe------------EEeccCCCEEEEEecCCeEEEEeCCCceeeeccCCCeEEEEEe---------CCEEEEE
Q 002389 729 EVIATKEPI------------RKLDTYGKTIFASTQGHRMKVIDSSRTLKDIYRSKGIKSMSVV---------QGKIYIG 787 (929)
Q Consensus 729 ~~~~h~~~V------------~s~s~~g~~L~sgs~Dg~V~IWDl~~~~~~l~~~~~V~sla~s---------dg~llsg 787 (929)
......-.| ....+++.+.++.+.+..-- ..+........=..+.|. +|+.-.
T Consensus 221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~-----~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~- 294 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKA-----FDLGGMMRNERDWVVVFDIHAVEAAVKAGDFIT- 294 (638)
T ss_dssp EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCC-----SSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBC-
T ss_pred EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccC-----cChhhcCcccccEEEEecHHHHHHHHhcCCeEE-
Confidence 000100111 01123333333333211000 000011111222222221 333111
Q ss_pred ECCC-cEEEEEccC----CccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC------CCe----
Q 002389 788 CMDS-SIQELAVSN----NVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR------KPQ---- 852 (929)
Q Consensus 788 s~Dg-~I~iwDl~t----g~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~------~~~---- 852 (929)
-+| .+.+.|.+. +.......| -.+..+.+...|++.+.+..+--+.++.++|... +.+
T Consensus 295 -~~g~gv~ViD~~~~~~~~~~~~~~iP------~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~ 367 (638)
T 3sbq_A 295 -LGDSKTPVLDGRKKDGKDSKFTRYVP------VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPR 367 (638)
T ss_dssp -CTTCCCCEEECSCBTTBCCSSEEEEE------ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGG
T ss_pred -ECCCCeeEEccccccccCCceEEEEe------CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcc
Confidence 121 366777665 222221111 1455667888999999988876677999999763 111
Q ss_pred ---EEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----------cEEEEEeCCCCeEEE--------EEcC
Q 002389 853 ---ISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGTQ----------QKVGRISAGSKITSL--------LTAN 911 (929)
Q Consensus 853 ---i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~sg----------~~i~tl~~h~~Vtsv--------s~dg 911 (929)
..... -.-.....+|.++|.-..|---|..|--|++... ..+.++..|..+-.+ .++|
T Consensus 368 ~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dG 446 (638)
T 3sbq_A 368 DVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADG 446 (638)
T ss_dssp GGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred cceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCc
Confidence 22222 2345678899999966666668999999997653 457788888554333 2457
Q ss_pred CEEEEEEC
Q 002389 912 DIVLCGTE 919 (929)
Q Consensus 912 ~~LaSgs~ 919 (929)
++|++...
T Consensus 447 k~lv~lnK 454 (638)
T 3sbq_A 447 KWLVALSK 454 (638)
T ss_dssp CEEEEEES
T ss_pred cEEEEecc
Confidence 78887653
No 427
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.64 E-value=1.8e+02 Score=36.05 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=117.8
Q ss_pred HhHHHHHhhccC------hHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhH-HHHHHHHHHHhccCc
Q 002389 292 LCGLLDVARHQN------LEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAI-MIALEFFHEILRIPR 364 (929)
Q Consensus 292 ~~~l~~~~~~~~------~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~-~~~~~~~~el~~l~r 364 (929)
+..|...+...+ -.+.+...++|-.-+-+=|+||..+.+. ++++|...+...+ ++|+.
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~-----L~~~L~dd~~~~~~~AalA---------- 495 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEA-----LKEVLYNDSATSGEAAALG---------- 495 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----HHHHHHTCCHHHHHHHHHH----------
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHH-----HHHHHhcCCHHHHHHHHHH----------
Confidence 455666665444 1356666677777777779998776654 3555554443333 22211
Q ss_pred hhhHHHHHHhh-ccCchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHH
Q 002389 365 SSAIDLLQRIH-KEGNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLL 443 (929)
Q Consensus 365 ~~~~~~l~~~~-~~~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~ 443 (929)
|.-+- ..|.-.....||.|++....| .+.-.+.+=|=++ ..=|+|+++++++.|...+++-+.-.
T Consensus 496 ------LGli~vGTgn~~ai~~LL~~~~e~~~e--~vrR~aalgLGll------~~g~~e~~~~li~~L~~~~dp~vRyg 561 (963)
T 4ady_A 496 ------MGLCMLGTGKPEAIHDMFTYSQETQHG--NITRGLAVGLALI------NYGRQELADDLITKMLASDESLLRYG 561 (963)
T ss_dssp ------HHHHHTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHH------TTTCGGGGHHHHHHHHHCSCHHHHHH
T ss_pred ------HhhhhcccCCHHHHHHHHHHHhccCcH--HHHHHHHHHHHhh------hCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 12221 225555667777777765544 3333333333322 01247999999999999989988886
Q ss_pred HHHHHHhcCccccccCchhhHHHHHHHhCCCCch--hh------hhh--ccCCcccch---hhhhchhhhhHH---HHHH
Q 002389 444 SSFILSNIGGTFSWTGEPYTVAWLVKKAGLNSSW--LQ------NMI--RNFDWLDQS---LQDRGVDSWSSK---IAKS 507 (929)
Q Consensus 444 ~~~~l~~l~g~fs~sg~~~~~~~llk~ag~~~~~--~~------~~~--~~~~~~~~~---~~~~~~~~w~~~---~~~~ 507 (929)
++-|+ |=-|.-||.+.+-..||+.+-=+... ++ .++ .+.+..... +.+. .+.--|. +|..
T Consensus 562 aa~al---glAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~-~d~~VR~gAalALG 637 (963)
T 4ady_A 562 GAFTI---ALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS-HNAHVRCGTAFALG 637 (963)
T ss_dssp HHHHH---HHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC-SCHHHHHHHHHHHH
T ss_pred HHHHH---HHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 55444 44577799999999999988433221 11 111 110000000 0111 1112222 2344
Q ss_pred HHhcCh---hHHHHHHhhhhcCCccccccccc
Q 002389 508 IIEIGK---PIYYALEKGLKSKTKSVCRDSLT 536 (929)
Q Consensus 508 l~~~g~---~~l~aL~~~l~s~~~~l~~~cL~ 536 (929)
+++-|. .++.+|+.........+.+.-.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDPVDFVRQAAMI 669 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCCCHHHHHHHHH
Confidence 565553 48889999888887777765443
No 428
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.88 E-value=77 Score=40.31 Aligned_cols=38 Identities=26% Similarity=0.185 Sum_probs=33.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 002389 862 TIQAMAVVEDFIYLNYNSSASSLQIWLRGTQQKVGRIS 899 (929)
Q Consensus 862 ~V~slafSpdg~~LaSgS~DG~I~IWdl~sg~~i~tl~ 899 (929)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777889999999999999999999999988865
No 429
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=41.45 E-value=24 Score=32.10 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=45.1
Q ss_pred HHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHHHhcC
Q 002389 383 LHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASEESSTMQLLSSFILSNIG 452 (929)
Q Consensus 383 mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l~~l~ 452 (929)
.-.|+..|+...++-|-.++..|-++. .++|++.|+++|+. .++.++..|+.+|-.+|
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLED-DSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHH-CCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence 366777777777777777777775542 26899999999964 47888999999999887
No 430
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=39.82 E-value=4.4e+02 Score=29.39 Aligned_cols=255 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCeEEEEECCC-----------CCeeEEEEeccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEEccCC----------
Q 002389 667 SDGSIKMWDIKK-----------QSAMLVWDVKEHR--KAVTSFSLFEPGESLLSGSADKTIGVWQMVQR---------- 723 (929)
Q Consensus 667 ~DGtIrIWD~~~-----------~~~~~i~~l~gH~--~~Vtslafspdg~~LaSgs~DgtIrIWDl~tg---------- 723 (929)
.||.|..|-... ......-.+.... ....-+..+..+.+.+.-..||.|..|=....
T Consensus 27 ~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~ 106 (473)
T 3of7_A 27 QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNA 106 (473)
T ss_dssp SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC--
T ss_pred CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCccc
Q ss_pred -----------------------eEEEEEEec-------cCCCeEEeccCCCEEEEEecCCeEEEEe-------------
Q 002389 724 -----------------------KLELIEVIA-------TKEPIRKLDTYGKTIFASTQGHRMKVID------------- 760 (929)
Q Consensus 724 -----------------------~~~~~~~~~-------h~~~V~s~s~~g~~L~sgs~Dg~V~IWD------------- 760 (929)
......... ....|..++......++.+.+|.|+.|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~ 186 (473)
T 3of7_A 107 KEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ 186 (473)
T ss_dssp -------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBT
T ss_pred ccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCC
Q ss_pred ----CCCceeeeccCCC--eEEEEEeCCEEEEEECCCcEEEEEccCCccceecccccccccCCCC-------eEEEEEcC
Q 002389 761 ----SSRTLKDIYRSKG--IKSMSVVQGKIYIGCMDSSIQELAVSNNVEREIKAPFKSWRLQSKP-------INSLVVYK 827 (929)
Q Consensus 761 ----l~~~~~~l~~~~~--V~sla~sdg~llsgs~Dg~I~iwDl~tg~~~~i~~~~~~~~~~~~~-------I~sl~~~~ 827 (929)
.......+..-.. |..++......++-..+|.|+.|-.....................| |..++...
T Consensus 187 ~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~ 266 (473)
T 3of7_A 187 DKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGE 266 (473)
T ss_dssp TTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECS
T ss_pred CCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCC
Q ss_pred CceEEEEEecCCCeEEEEECCC----------------CCeEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002389 828 DWLYSASSSVEGSNIKEWRRHR----------------KPQISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRGT 891 (929)
Q Consensus 828 d~i~~~s~S~dDgtI~IWDl~~----------------~~~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~s 891 (929)
.....++ ++|.|+.|-.+. ..+..........|..++.......++ ..||.|+.|-...
T Consensus 267 ~hs~alt---~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~l--t~~G~v~~wG~n~ 341 (473)
T 3of7_A 267 NHCFALT---KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLIL--SQDGDLYSCGRLD 341 (473)
T ss_dssp SEEEEEE---TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEE--ETTSCEEEEEECT
T ss_pred CeEEEEe---cCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEE--eCCCeEEEEECCC
Q ss_pred CcEE-------------------------EEEeCCCCeEEEEEcCCEEEEEECCCcEEEe
Q 002389 892 QQKV-------------------------GRISAGSKITSLLTANDIVLCGTETGLIKGW 926 (929)
Q Consensus 892 g~~i-------------------------~tl~~h~~Vtsvs~dg~~LaSgs~DG~I~IW 926 (929)
.-.+ ..+..-..|..|+....+-+.-+.||.|+.|
T Consensus 342 ~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~w 401 (473)
T 3of7_A 342 MFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSW 401 (473)
T ss_dssp TCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEe
No 431
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=38.70 E-value=4.2e+02 Score=28.83 Aligned_cols=231 Identities=9% Similarity=0.001 Sum_probs=127.3
Q ss_pred CCEEEEEEeCCEEEEEECCCeEEEEECCCC-C-----------eeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 002389 650 GAVTALIYYKGLLCSGFSDGSIKMWDIKKQ-S-----------AMLVWDVKEHRKAVTSFSLFEPGESLLSGSADKTIGV 717 (929)
Q Consensus 650 ~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~-~-----------~~~i~~l~gH~~~Vtslafspdg~~LaSgs~DgtIrI 717 (929)
..|..|+......+.-..||.|..|-.... + ..+.. + .-...|..++-. ..+.+.-..||.|..
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v-~l~~~i~~va~G--~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGK-V-ELQEKVVQVSAG--DSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEE-C-CCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeE-e-cCCCcEEEEecC--CCeEEEEcCCCcEEE
Confidence 567777777666667778999999965421 0 01111 1 112356666543 344555567899999
Q ss_pred EEc--c-CCeE---------EEEEEeccCCCeEEeccCCCEEEEEecCCeEEEEeCCC--cee-----------------
Q 002389 718 WQM--V-QRKL---------ELIEVIATKEPIRKLDTYGKTIFASTQGHRMKVIDSSR--TLK----------------- 766 (929)
Q Consensus 718 WDl--~-tg~~---------~~~~~~~h~~~V~s~s~~g~~L~sgs~Dg~V~IWDl~~--~~~----------------- 766 (929)
|-. . .+++ ...........|..+.......+..+.+|.|+.|-.+. ++-
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 214 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLER 214 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHH
T ss_pred eeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccc
Confidence 964 2 1211 01111123456777777778888889999999996541 110
Q ss_pred -------eec-----cCCCeEEEEEeCCEEEEEECCCcEEEEEccCCcc------ceecccccccccCC--CCeEEEEEc
Q 002389 767 -------DIY-----RSKGIKSMSVVQGKIYIGCMDSSIQELAVSNNVE------REIKAPFKSWRLQS--KPINSLVVY 826 (929)
Q Consensus 767 -------~l~-----~~~~V~sla~sdg~llsgs~Dg~I~iwDl~tg~~------~~i~~~~~~~~~~~--~~I~sl~~~ 826 (929)
.+. ....|..++......++-..+|.|+.|-...... .....|..+..... ..|..++..
T Consensus 215 ~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G 294 (413)
T 1a12_A 215 LLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 294 (413)
T ss_dssp HHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC
T ss_pred cccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecc
Confidence 000 1234666666667767777899999997653211 11111212211112 346666554
Q ss_pred CCceEEEEEecCCCeEEEEECCCC-C-----------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002389 827 KDWLYSASSSVEGSNIKEWRRHRK-P-----------QISIAPEKGTTIQAMAVVEDFIYLNYNSSASSLQIWLRG 890 (929)
Q Consensus 827 ~d~i~~~s~S~dDgtI~IWDl~~~-~-----------~i~~l~~h~~~V~slafSpdg~~LaSgS~DG~I~IWdl~ 890 (929)
......+ . ++|.++.|-.+.. + ....+. .-..|..++... ...+.-..||.|+.|-..
T Consensus 295 ~~hs~al--~-~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G~--~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 295 QHHTVCM--D-SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGA--SVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp SSEEEEE--E-TTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred cceEEEE--e-CCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEECc--ceEEEEeCCCCEEEecCC
Confidence 4433333 3 5789999975321 0 111111 122566666543 344444579999999643
No 432
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=38.41 E-value=2.8e+02 Score=31.53 Aligned_cols=294 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcch--hhhhhhhhcCCCc--------------------hHHHHHHhh-
Q 002389 154 DVILEQLLTAISASKEETVIRASVSILTTIILANE--SVIEDIKKKGLRL--------------------SDLATALKR- 210 (929)
Q Consensus 154 ~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~lk~- 210 (929)
+..+..|++.|.++..+++++-...++.++...|+ ..+..+|-.||+. +.++.++-+
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Q ss_pred cchhhHHHHHhcC----------------------------------CCchhhhhccchhHHHHHHhccccccCcccccc
Q 002389 211 NVPEAAILIYLIK----------------------------------PSPTEIKTLELLPTLVEVICTSKLYKGKLESVR 256 (929)
Q Consensus 211 ~~~~~~vl~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (929)
+.++--+|-++++ +..-+.-. .++|.++.++...=........+.
T Consensus 156 ~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~-~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 156 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEK-KFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHH-HHHHHHHHHHHHHHC---------
T ss_pred CCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHccc-chhHHHHHHHHHhhcccccccccc
Q ss_pred cCchhhHHHHHHHHHhc-cccccchhhhhhhchhhhH--hHHHHHhhccChHH--HHHHHHHHHhhhhccCcchhHHHhh
Q 002389 257 LTPPAASLMIIEVLVTA-FDYATNNMHLAAINSPRVL--CGLLDVARHQNLEE--LISLATILVKCIQFDGQCRKYLSEF 331 (929)
Q Consensus 257 ~~p~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~e--~~~~~~~l~~c~~~d~~cr~~ia~~ 331 (929)
-.+....+-++=+++-- -=.+=+..-+..+..-++. ..|++.++.---|. |+.++.+.-+.-...+.+...+.+.
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~ 314 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL 314 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHH
Q ss_pred c---CccchhhhhhcC--CchhHHHHHHHHHHHhccCc---hhhHHHHHHhhcc-CchhHHH------------------
Q 002389 332 T---AVAPLACLLQSG--EKRAIMIALEFFHEILRIPR---SSAIDLLQRIHKE-GNINILH------------------ 384 (929)
Q Consensus 332 ~---~~~~~~~l~~~~--~~~~~~~~~~~~~el~~l~r---~~~~~~l~~~~~~-~~~~~mh------------------ 384 (929)
+ +.-++++.|... .|..-...+++|+|.|.-+- ++..+-..+++.| =..|-+|
T Consensus 315 ~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~ 394 (480)
T 1ho8_A 315 LLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNY 394 (480)
T ss_dssp HHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGG
T ss_pred HHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcch
Q ss_pred ----HHHHHhhccc-------chhhHHHHHHHhhhccccC--CCCCCcchHHHHHHHHHHHhccCChhhhHHHHHHH
Q 002389 385 ----ILKLSLQQLQ-------SDYQLLAANLLLQLDTLEN--TTGKSVFTEEAMQVILKAVASEESSTMQLLSSFIL 448 (929)
Q Consensus 385 ----~~l~~lq~~~-------~~~~~~~a~lllqld~l~~--~~~~s~yreea~~~~~~~l~~~~~~~~q~~~~~~l 448 (929)
.|.-+|.+.- ....-..|+-.-=+=-++. |++..+-.+--.+..+..|=.++++.++-+|-.|+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
No 433
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=36.46 E-value=5.6e+02 Score=29.67 Aligned_cols=146 Identities=13% Similarity=0.043 Sum_probs=81.3
Q ss_pred HhHHHHHhhccChHHHHHHHHHHH-hhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHH
Q 002389 292 LCGLLDVARHQNLEELISLATILV-KCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDL 370 (929)
Q Consensus 292 ~~~l~~~~~~~~~~e~~~~~~~l~-~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~ 370 (929)
+..|+..++..+.+=|..++.-+. +|.++.+.-..|| .-++++|.......+..++..+.+++.-+-.
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v------~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~----- 455 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHI------DTIMRVLTTAGSYVRDDAVPNLIQLITNSVE----- 455 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHH------HHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS-----
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHH------HHHHHHHHhccchhHHHHHHHHHHHHhcChh-----
Confidence 455555565566666766665555 4555444444443 3466777766665666666666666653211
Q ss_pred HHHhhccCchhHHHHHHHHhhcccchhhHH---HHHHHhhh-ccccCC-----CCCCcchHHHHHHHHHHHhc-cCChhh
Q 002389 371 LQRIHKEGNINILHILKLSLQQLQSDYQLL---AANLLLQL-DTLENT-----TGKSVFTEEAMQVILKAVAS-EESSTM 440 (929)
Q Consensus 371 l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~---~a~lllql-d~l~~~-----~~~s~yreea~~~~~~~l~~-~~~~~~ 440 (929)
-.-.+...|.-+|+... ++.|+ ++-+|=+. +++.++ .-..+.-+++++.|-..++. .+++.+
T Consensus 456 -------l~~~~v~~L~~~l~~~~-~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 527 (618)
T 1w63_A 456 -------MHAYTVQRLYKAILGDY-SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVT 527 (618)
T ss_dssp -------THHHHHHHHHHHHHHCC-SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHH
T ss_pred -------HHHHHHHHHHHHHhccc-ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHH
Confidence 00112333444554311 12222 22233222 333221 11255667888988887776 478899
Q ss_pred hHHHHHHHHhcCcccc
Q 002389 441 QLLSSFILSNIGGTFS 456 (929)
Q Consensus 441 q~~~~~~l~~l~g~fs 456 (929)
|..+.-|++-++-++.
T Consensus 528 r~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 528 RGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9988899988888774
No 434
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=34.99 E-value=49 Score=34.54 Aligned_cols=39 Identities=10% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHHhcCCCchhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHh
Q 002389 216 AILIYLIKPSPTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVT 272 (929)
Q Consensus 216 ~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~ 272 (929)
-|.-|||. .|++|..+++++.|++. . |..|.++++.++.
T Consensus 136 eVi~fLL~--------tEiiplCLrime~Gsel-S---------KtvAtfIlqKIL~ 174 (268)
T 2fv2_A 136 EVINFLLT--------TEIIPLCLRIMESGSEL-S---------KTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHH--------TTHHHHHHHHHHHSCHH-H---------HHHHHHHHHHHHH
T ss_pred HHHHHHHh--------hhHHHHHHHHHhhccHH-H---------HHHHHHHHHHHhc
Confidence 45556553 38999999999999987 3 6889999999864
No 435
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=34.55 E-value=1.2e+02 Score=31.28 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHhccccccchhhhhhhchhhhHhHHHHH-hhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhh
Q 002389 261 AASLMIIEVLVTAFDYATNNMHLAAINSPRVLCGLLDV-ARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLAC 339 (929)
Q Consensus 261 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~ 339 (929)
..|+-++..++.+.......-....-....++..|++. +..+...-|..+...|+..+...+.--.. .+.++.
T Consensus 73 ~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~ 146 (278)
T 4ffb_C 73 EQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIP 146 (278)
T ss_dssp HHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGG
T ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHH
Confidence 44555677777654433222222222234556667665 44455555666777777777665532221 234555
Q ss_pred hhhcCCchhHHHHHHHHHHHhc
Q 002389 340 LLQSGEKRAIMIALEFFHEILR 361 (929)
Q Consensus 340 l~~~~~~~~~~~~~~~~~el~~ 361 (929)
.+..++.+.+..++.+|.++++
T Consensus 147 ~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 147 FFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHH
Confidence 6778888899999999988875
No 436
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=33.12 E-value=5e+02 Score=28.07 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=105.3
Q ss_pred cEEEEEEcCCCCEEEEEe------------CCCeEEEEEccC--CeEEEEEEecc--C---CCeEEec--c--CCC-EEE
Q 002389 693 AVTSFSLFEPGESLLSGS------------ADKTIGVWQMVQ--RKLELIEVIAT--K---EPIRKLD--T--YGK-TIF 748 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs------------~DgtIrIWDl~t--g~~~~~~~~~h--~---~~V~s~s--~--~g~-~L~ 748 (929)
...++...|+|..+++++ .+|.|.++|..+ ++.......+. . -....++ . ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 445666777765555442 689999999874 33333222221 1 1222222 2 343 455
Q ss_pred EEec---CCeEEEEeCCC--cee----eecc--CCCeEEEEEe-CCEEEEEEC------------------CCcEEEEEc
Q 002389 749 ASTQ---GHRMKVIDSSR--TLK----DIYR--SKGIKSMSVV-QGKIYIGCM------------------DSSIQELAV 798 (929)
Q Consensus 749 sgs~---Dg~V~IWDl~~--~~~----~l~~--~~~V~sla~s-dg~llsgs~------------------Dg~I~iwDl 798 (929)
++.. +.++.+|+++. ... .+.+ -...+.+.+. +|.++++.. .|.++.+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 5532 45777777652 211 1222 2346788776 888777653 133444443
Q ss_pred cCCccceecccccccccCCCCeEEEEEcCCceEEEEEecCCCeEEEEECCC-CCeE--EEecCCCCCeEEEEEec-CCCE
Q 002389 799 SNNVEREIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGSNIKEWRRHR-KPQI--SIAPEKGTTIQAMAVVE-DFIY 874 (929)
Q Consensus 799 ~tg~~~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDgtI~IWDl~~-~~~i--~~l~~h~~~V~slafSp-dg~~ 874 (929)
++...+ ...-...+.++++|++..+.......+.|..|++.. +... ..+ ......-.+++.+ +|.+
T Consensus 211 --~~~~~~-------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 211 --NDVRVV-------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp --TCCEEE-------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred --CeEEEe-------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 221111 112345678899998765444443567899999753 3321 223 2245567889999 5998
Q ss_pred EEEEeCC-CcEEEEECC--CCcEEEEEe
Q 002389 875 LNYNSSA-SSLQIWLRG--TQQKVGRIS 899 (929)
Q Consensus 875 LaSgS~D-G~I~IWdl~--sg~~i~tl~ 899 (929)
.+++..+ +.|..|+.. .+..+.+++
T Consensus 281 wva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8876544 344444433 244455554
No 437
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=31.26 E-value=5.7e+02 Score=28.65 Aligned_cols=22 Identities=5% Similarity=-0.230 Sum_probs=16.9
Q ss_pred CCeEEEEEecCCCEEEEEeCCC
Q 002389 861 TTIQAMAVVEDFIYLNYNSSAS 882 (929)
Q Consensus 861 ~~V~slafSpdg~~LaSgS~DG 882 (929)
..-..|+|.|||.+.++.+..+
T Consensus 139 H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 139 HLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp SCEEEEEECTTSCEEEEECCTT
T ss_pred ccCCcEeECCCCcEEEEeCCCC
Confidence 3568999999998877766543
No 438
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=31.05 E-value=1.5e+02 Score=35.48 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=31.3
Q ss_pred CCCEEEEEEeCCEEEEEECCCeEEEEECCCCCeeEEEEe
Q 002389 649 SGAVTALIYYKGLLCSGFSDGSIKMWDIKKQSAMLVWDV 687 (929)
Q Consensus 649 ~~~Vtsl~fs~~~LaSGs~DGtIrIWD~~~~~~~~i~~l 687 (929)
+..|.++.+.+.++++-+.|+++|+||+.++++.....+
T Consensus 221 ~~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 221 DSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CCEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346777777788999999999999999999876444444
No 439
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.95 E-value=1.1e+02 Score=38.77 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=30.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEccCCeEEEEEE
Q 002389 693 AVTSFSLFEPGESLLSGSADKTIGVWQMVQRKLELIEV 730 (929)
Q Consensus 693 ~Vtslafspdg~~LaSgs~DgtIrIWDl~tg~~~~~~~ 730 (929)
.+.+++..++..++++-+.|+++|+|++.++++.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556666788899999999999999999998765543
No 440
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=30.95 E-value=5.9e+02 Score=28.28 Aligned_cols=108 Identities=6% Similarity=0.011 Sum_probs=56.4
Q ss_pred CeEEEEEe-CCEEEEEECCC-cEEEEEccCCccceecccccccc--cCCCCeEEEEEcC----CceEEEEEec------C
Q 002389 773 GIKSMSVV-QGKIYIGCMDS-SIQELAVSNNVEREIKAPFKSWR--LQSKPINSLVVYK----DWLYSASSSV------E 838 (929)
Q Consensus 773 ~V~sla~s-dg~llsgs~Dg-~I~iwDl~tg~~~~i~~~~~~~~--~~~~~I~sl~~~~----d~i~~~s~S~------d 838 (929)
..+.|++. +|.++++...+ .|+.++..++....+........ .....+..++++| ++.+-++.+. +
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 45567775 77777777665 57777655443322211101111 1234566888997 3443344432 0
Q ss_pred -----CCeEEEEECCCC--C------eEEEec-CCCCCeEEEEEecCCCEEEEEeC
Q 002389 839 -----GSNIKEWRRHRK--P------QISIAP-EKGTTIQAMAVVEDFIYLNYNSS 880 (929)
Q Consensus 839 -----DgtI~IWDl~~~--~------~i~~l~-~h~~~V~slafSpdg~~LaSgS~ 880 (929)
...|.-|+...+ . ++..+. ........|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554321 1 111122 12235789999999998877653
No 441
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.81 E-value=8e+02 Score=29.14 Aligned_cols=214 Identities=10% Similarity=0.121 Sum_probs=103.4
Q ss_pred CeEEEEECCCCCeeEEEEec-cCCC------cEEEEEEcCCCCEEEEE----------eCCCeEEEEEccCCeEEEEE-E
Q 002389 669 GSIKMWDIKKQSAMLVWDVK-EHRK------AVTSFSLFEPGESLLSG----------SADKTIGVWQMVQRKLELIE-V 730 (929)
Q Consensus 669 GtIrIWD~~~~~~~~i~~l~-gH~~------~Vtslafspdg~~LaSg----------s~DgtIrIWDl~tg~~~~~~-~ 730 (929)
.+|+++|+.+++.. -..+. .-+. ....++|..++..+++. +....|+.|.+.+....... .
T Consensus 156 ~~~~~~d~~t~~~~-~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~ 234 (711)
T 4hvt_A 156 MFFREWDLEKKDFV-KNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLF 234 (711)
T ss_dssp EEEEEEETTTTEEC-TTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEE
T ss_pred eEEEEEECCcCCcC-CCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEe
Confidence 47999999987531 00111 0000 01334776444434432 12356889988764321111 1
Q ss_pred eccCCCe--EE-eccCCCE-----EEEEecC---CeEEEEeCC---CceeeeccCCCeEEEEEeCCEEEEEE--------
Q 002389 731 IATKEPI--RK-LDTYGKT-----IFASTQG---HRMKVIDSS---RTLKDIYRSKGIKSMSVVQGKIYIGC-------- 788 (929)
Q Consensus 731 ~~h~~~V--~s-~s~~g~~-----L~sgs~D---g~V~IWDl~---~~~~~l~~~~~V~sla~sdg~llsgs-------- 788 (929)
.+....+ .. .+.++++ +++.+.+ ..+.+.+.. +....+.......-+...+++++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (711)
T 4hvt_A 235 EVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDATLQGSFKEYVFWLLRSDWKFKS 314 (711)
T ss_dssp ECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCEEEEEETTEEEEECSSCEEETT
T ss_pred ccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcceEeeeECCEEEEEECccccccc
Confidence 1222222 22 3445552 3333322 356666655 33233332222222344577755522
Q ss_pred ---CCCcEEEEEccCCcc--------ceecccccccccCCCCeEEEEEcCCceEEEEEecCCC--eEEEEECCCCC-eEE
Q 002389 789 ---MDSSIQELAVSNNVE--------REIKAPFKSWRLQSKPINSLVVYKDWLYSASSSVEGS--NIKEWRRHRKP-QIS 854 (929)
Q Consensus 789 ---~Dg~I~iwDl~tg~~--------~~i~~~~~~~~~~~~~I~sl~~~~d~i~~~s~S~dDg--tI~IWDl~~~~-~i~ 854 (929)
..+.+...|+.++.. ..+.. ......+..+....+.++.... +++ .+.++|..++. ...
T Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~g~~~~~ 387 (711)
T 4hvt_A 315 HNIKAGSLVALHFTDLLKTESDKTSLKILFT-----PTANEVFNFISTTKDRVFLATY--DNVVAKVVTFTLENEQWTKP 387 (711)
T ss_dssp EEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-----CCTTEEEEEEEECSSCEEEEEE--ETTEEEEEEECEETTEECCC
T ss_pred ccCCCCeEEEEECCcccccccccccceEEEC-----CCCCCeEEEEEEECCEEEEEEE--ECCEEEEEEEECCCCceEEE
Confidence 466788888876421 11111 1224466778888776655444 343 57778776553 112
Q ss_pred E-ecCC-CCCeEEEEEecCCC-EEEEEeC---CCcEEEEECC
Q 002389 855 I-APEK-GTTIQAMAVVEDFI-YLNYNSS---ASSLQIWLRG 890 (929)
Q Consensus 855 ~-l~~h-~~~V~slafSpdg~-~LaSgS~---DG~I~IWdl~ 890 (929)
. +.-. .+.+.....++++. ++++.+. -+.+..+|..
T Consensus 388 ~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 388 VVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 2 2111 24566666667664 4444442 3678888876
No 442
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=26.97 E-value=73 Score=37.23 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=55.4
Q ss_pred eEEEEECCC----CCeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC------cE-------EEEEeCCC
Q 002389 841 NIKEWRRHR----KPQISIAPEKGTTIQAMAVVEDFIYLNYNS-SASSLQIWLRGTQ------QK-------VGRISAGS 902 (929)
Q Consensus 841 tI~IWDl~~----~~~i~~l~~h~~~V~slafSpdg~~LaSgS-~DG~I~IWdl~sg------~~-------i~tl~~h~ 902 (929)
.+.+.|.+. +..+..+..-......+.++|||++++.++ -+.++.|+|..+. +. +...+.+-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 466777654 222222222233455788999999997766 6789999997742 11 34444444
Q ss_pred CeEEEEEcCC--EEEEEECCCcEEEeec
Q 002389 903 KITSLLTAND--IVLCGTETGLIKGWIP 928 (929)
Q Consensus 903 ~Vtsvs~dg~--~LaSgs~DG~I~IWdi 928 (929)
.....+|+++ ...|---|..|--|++
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred cccEEEECCCCceEeeeeecceEEEEec
Confidence 4666778744 3344447899999985
No 443
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.25 E-value=61 Score=27.90 Aligned_cols=77 Identities=18% Similarity=0.009 Sum_probs=49.0
Q ss_pred cchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHHhccCchhhHHHHHHhhccCchhHHHHHHHHhhcccchhhHHHH
Q 002389 323 QCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEILRIPRSSAIDLLQRIHKEGNINILHILKLSLQQLQSDYQLLAA 402 (929)
Q Consensus 323 ~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~r~~~~~~l~~~~~~~~~~~mh~~l~~lq~~~~~~~~~~a 402 (929)
.+|..|.+.++..++++-|.+++.=.....=....| .-++..+.++|..+...| -..-.+|+-+||...+ |-+|
T Consensus 13 ~~r~~Lv~~l~v~~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG-~~af~~F~~aL~~~~~---~~La 86 (94)
T 2p1h_A 13 QHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKD-NDSYVSFYNALLHEGY---KDLA 86 (94)
T ss_dssp HTHHHHHHHCCHHHHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTC---HHHH
T ss_pred HhHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcC-HHHHHHHHHHHHHcCH---HHHH
Confidence 478889999999999997765533222222122222 111123888999998777 4677888999987643 4555
Q ss_pred HHH
Q 002389 403 NLL 405 (929)
Q Consensus 403 ~ll 405 (929)
.+|
T Consensus 87 ~~L 89 (94)
T 2p1h_A 87 ALL 89 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 444
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=25.62 E-value=2.5 Score=36.45 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=43.0
Q ss_pred chhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHH-HHhh-cchhhHHHHHhcCCCchh
Q 002389 169 EETVIRASVSILTTIILANESVIEDIKKKGLRLSDLAT-ALKR-NVPEAAILIYLIKPSPTE 228 (929)
Q Consensus 169 ~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~-~~~~~~vl~~l~~~~~~~ 228 (929)
.-++++-||.+ ..|.++++..|+.|++. ...||+++ -|.. .+..+..|..+|.-|..+
T Consensus 20 ~~~~m~dPV~~-~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 20 MDTLMTDPVRL-PSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp TCSBCSSEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred cCchhcCCeEC-CCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence 34567778987 79999999999999985 57899998 4554 455666666666555444
No 445
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=23.81 E-value=4.9e+02 Score=26.25 Aligned_cols=139 Identities=9% Similarity=0.100 Sum_probs=70.7
Q ss_pred HHHhhccChHHHHHHHHHHHh-hhhccCcchhHHHhhcCccc----hhhhh-hcCCchhHHHHHHHHHHHhccCc-hhhH
Q 002389 296 LDVARHQNLEELISLATILVK-CIQFDGQCRKYLSEFTAVAP----LACLL-QSGEKRAIMIALEFFHEILRIPR-SSAI 368 (929)
Q Consensus 296 ~~~~~~~~~~e~~~~~~~l~~-c~~~d~~cr~~ia~~~~~~~----~~~l~-~~~~~~~~~~~~~~~~el~~l~r-~~~~ 368 (929)
-..++..+-+||..+..-|.. .++ | |..++....+... +.+.| .-.+...+..|++-+.+|..==| ..+.
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~--~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLS--Q-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGG--G-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHh--c-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 455677899999998877777 664 2 4444311222223 33344 33455566666666666542111 0111
Q ss_pred -HHHHHhhccCchhHHHHHHHHhhccc-chhhHHHHHHHhhhcccc---CCCCCCcc--hHHHHHHHHHHHhccCChhhh
Q 002389 369 -DLLQRIHKEGNINILHILKLSLQQLQ-SDYQLLAANLLLQLDTLE---NTTGKSVF--TEEAMQVILKAVASEESSTMQ 441 (929)
Q Consensus 369 -~~l~~~~~~~~~~~mh~~l~~lq~~~-~~~~~~~a~lllqld~l~---~~~~~s~y--reea~~~~~~~l~~~~~~~~q 441 (929)
.++.. .+-.+|-.+...- ..+....+. ||.+. +| ...| =+.-++.|+++|.++ ++.++
T Consensus 99 ~~y~~~--------llp~ll~~l~dkk~~V~~aa~~a----l~~i~~~~~~--~~~~~~l~~ll~~l~~~l~~k-~~~vk 163 (249)
T 2qk1_A 99 KDYVSL--------VFTPLLDRTKEKKPSVIEAIRKA----LLTICKYYDP--LASSGRNEDMLKDILEHMKHK-TPQIR 163 (249)
T ss_dssp HHHHHH--------HHHHHHHGGGCCCHHHHHHHHHH----HHHHHHHSCT--TCTTCTTHHHHHHHHHHTTCS-SHHHH
T ss_pred HHHHHH--------HHHHHHHHHcCCCHHHHHHHHHH----HHHHHHHccc--cccCCcHHHHHHHHHHHHcCC-ChHHH
Confidence 11111 2223343333321 111222222 22222 33 3344 788999999999888 77888
Q ss_pred HHHHHHHHhcC
Q 002389 442 LLSSFILSNIG 452 (929)
Q Consensus 442 ~~~~~~l~~l~ 452 (929)
+++..+|..+-
T Consensus 164 ~~al~~l~~~~ 174 (249)
T 2qk1_A 164 MECTQLFNASM 174 (249)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 86666655443
No 446
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=23.62 E-value=3.3 Score=36.75 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=41.2
Q ss_pred chhhhhhhHHhhHhh-hhcchhhhhhhhhcCCCchHHHH-HHhh-cchhhHHHHHhcCCCc
Q 002389 169 EETVIRASVSILTTI-ILANESVIEDIKKKGLRLSDLAT-ALKR-NVPEAAILIYLIKPSP 226 (929)
Q Consensus 169 ~~~v~~~~v~il~~~-~~~~~~~~~~~~~~~~~~~~~~~-~lk~-~~~~~~vl~~l~~~~~ 226 (929)
.-++++-||.+ ..+ .++++..|+.|+.. ...||+.+ -|.. .+..|..|..+|.-|.
T Consensus 28 ~~~~m~dPV~~-~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 28 MSTLMCDPVVL-PSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp TCSBCSSEEEC-TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred ccccccCCeEC-CCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 35677789987 888 99999999999987 56899998 4554 3445555665555443
No 447
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=23.51 E-value=4.1e+02 Score=33.09 Aligned_cols=191 Identities=17% Similarity=0.241 Sum_probs=111.6
Q ss_pred HHHHHHHHhhhhhcccccccchhhhHHHHHHHHHhccCCCCceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhh
Q 002389 106 LLEIIEKAISSLFFSGDLRKCNKDYVVEVTTLYKMLNSKTGVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIIL 185 (929)
Q Consensus 106 ~~~~l~~~i~~~~~s~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~ 185 (929)
.+.-|+..+..+..|+ -++|. .++..++.+- +++.+. ....-.+++.+.+.+-+-|+. +.|..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~ 81 (986)
T 2iw3_A 12 SIKVLEELFQKLSVAT-ADNRH-EIASEVASFL---NGNIIE--HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIAN 81 (986)
T ss_dssp HHHHHHHHHHHHTTCC-TTTHH-HHHHHHHHHH---TSSCSS--SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTC
T ss_pred hHHHHHHHHhhccccc-hhHHH-HHHHHHHHHH---hccccc--cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHH
Confidence 3445555666677777 66777 6666677664 443221 222347888888887666666 777777777764
Q ss_pred cchhhhhhhhhcCCCchHHH-----HHHhh------cchhhH-----HHHHhcCCCchhhhhccchhHHHHHHhcccccc
Q 002389 186 ANESVIEDIKKKGLRLSDLA-----TALKR------NVPEAA-----ILIYLIKPSPTEIKTLELLPTLVEVICTSKLYK 249 (929)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~-----~~lk~------~~~~~~-----vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (929)
.... .+.++|+. .+|.. .|-+|| -|.-.++|++. --++|.|++.+..+.
T Consensus 82 ~~~~--------~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~--- 146 (986)
T 2iw3_A 82 QSNL--------SPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETN--- 146 (986)
T ss_dssp TTTC--------CTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCC---
T ss_pred hcCC--------CCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhcccc---
Confidence 4322 12223322 23322 133333 35666777765 257999999998765
Q ss_pred CcccccccCchhhHHHHHHHHHhcc-c-----------------cccchhhhhhhchhhhHhHHHHHhhccChHHHHHHH
Q 002389 250 GKLESVRLTPPAASLMIIEVLVTAF-D-----------------YATNNMHLAAINSPRVLCGLLDVARHQNLEELISLA 311 (929)
Q Consensus 250 ~~~~~~~~~p~~a~~~~~~~l~~~~-~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~ 311 (929)
.|+. |.+|+-+++.|.... + .++..+-..+ +...+..++..+.+.+++-++.+
T Consensus 147 kw~~------k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~--~~~~~~~~~~~~~n~d~~~~~~~- 217 (986)
T 2iw3_A 147 KWQE------KIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAA--ATAAMTKATETVDNKDIERFIPS- 217 (986)
T ss_dssp CHHH------HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHH--HHHHHHHHGGGCCCTTTGGGHHH-
T ss_pred chHH------HHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHH--HHHHHHHHHhcCCCcchhhhHHH-
Confidence 3443 578888888887531 1 1122221111 23445666667788888888877
Q ss_pred HHHHhhhhccC---cchhHHHhhc
Q 002389 312 TILVKCIQFDG---QCRKYLSEFT 332 (929)
Q Consensus 312 ~~l~~c~~~d~---~cr~~ia~~~ 332 (929)
|+.||.--. .|-+.++..+
T Consensus 218 --~~~~~~~p~~~~~~~~~l~~~t 239 (986)
T 2iw3_A 218 --LIQCIADPTEVPETVHLLGATT 239 (986)
T ss_dssp --HHHHHHCTTHHHHHHHHHTTCC
T ss_pred --HHHHhcChhhhHHHHHHhhcCe
Confidence 889988543 3555544443
No 448
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=22.71 E-value=7.4e+02 Score=26.67 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=100.9
Q ss_pred CceeccchHHHHHHHHHHHhcCcchhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHHHHhhcchhhHHHHHhcCCC
Q 002389 146 GVKYDMLQDVILEQLLTAISASKEETVIRASVSILTTIILANESVIEDIKKKGLRLSDLATALKRNVPEAAILIYLIKPS 225 (929)
Q Consensus 146 ~~~~~~~~~~~i~~~~e~~~~s~~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~vl~~l~~~~ 225 (929)
++..-.++-.-...++|.|.+|. .+.+|.+++=|..+...|..-.+.-.++|- +.+
T Consensus 109 ~~iLrtsps~ra~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G-L~~---------------------- 164 (339)
T 3dad_A 109 TLILRTQLSVRVNAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEG-LSC---------------------- 164 (339)
T ss_dssp EEEEEECHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTH-HHH----------------------
T ss_pred ceEEecCcHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhcc-HHH----------------------
Confidence 33333333334589999999655 555888888888866677666555544443 333
Q ss_pred chhhhhccchhHHHHHHhccccccCcccccccCchhhHHHHHHHHHhccccccchhhhhhhc-hhhhHhHHHHHhhccCh
Q 002389 226 PTEIKTLELLPTLVEVICTSKLYKGKLESVRLTPPAASLMIIEVLVTAFDYATNNMHLAAIN-SPRVLCGLLDVARHQNL 304 (929)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 304 (929)
|+.|++.++.. . .+-++.-+.+|.. +. --+..++ ++.+|..+..-+...+.
T Consensus 165 ------------Li~vi~~~~gN--~--------q~Y~L~AL~~LM~-~v-----~Gm~gvvs~~~fI~~lyslv~s~~~ 216 (339)
T 3dad_A 165 ------------LIRVGAAADHN--Y--------QSYILRALGQLML-FV-----DGMLGVVAHSDTIQWLYTLCASLSR 216 (339)
T ss_dssp ------------HHHHHTTSCHH--H--------HHHHHHHHHHHTT-SH-----HHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred ------------HHHHHHhcChH--H--------HHHHHHHHHHHHh-cc-----ccccchhCCHHHHHHHHHHHcCccH
Confidence 34444433211 0 1223333333322 10 0011111 45555555544444444
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHHhhcC----------ccchhhhhh---cCCchhHHHHHHHHHHHhcc-C-chhhHH
Q 002389 305 EELISLATILVKCIQFDGQCRKYLSEFTA----------VAPLACLLQ---SGEKRAIMIALEFFHEILRI-P-RSSAID 369 (929)
Q Consensus 305 ~e~~~~~~~l~~c~~~d~~cr~~ia~~~~----------~~~~~~l~~---~~~~~~~~~~~~~~~el~~l-~-r~~~~~ 369 (929)
.-...|.+||..++..+.+=-.-+.+.+. .+.++++|+ +.+..-.-+|+.|+--+++= + +.+...
T Consensus 217 ~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~d 296 (339)
T 3dad_A 217 LVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYD 296 (339)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence 44556778888877776433334444444 788999998 55666667788888777653 3 333566
Q ss_pred HHHHhhccC
Q 002389 370 LLQRIHKEG 378 (929)
Q Consensus 370 ~l~~~~~~~ 378 (929)
+...+..-|
T Consensus 297 i~d~Le~~g 305 (339)
T 3dad_A 297 VTDALEQQG 305 (339)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 777777666
No 449
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=22.23 E-value=1.6e+02 Score=31.77 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCchhHHHHHHHHHHH---hccCchhhHHHHHHhhcc-Cch
Q 002389 305 EELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEKRAIMIALEFFHEI---LRIPRSSAIDLLQRIHKE-GNI 380 (929)
Q Consensus 305 ~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~~~~~~~~~~~~el---~~l~r~~~~~~l~~~~~~-~~~ 380 (929)
..|..++.-|..|-+.||+-+.+-. +-..-.....||.-|.-+ =.++|+.+.+||...+++ |+|
T Consensus 66 ~~r~~~i~~l~s~Q~~dGGF~g~~g------------~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf 133 (331)
T 3dss_B 66 MNKEEILVFIKSCQHECGGVSASIG------------HDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSF 133 (331)
T ss_dssp SCHHHHHHHHHHTBCTTSCBBSSTT------------SCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCB
T ss_pred hhHHHHHHHHhhhcCCCCCcCCCCC------------CCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCE
Confidence 4588899999999999998775432 112333444555555443 234567799999999887 888
Q ss_pred hHH-----HHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhcc---------CChhhhHHHHH
Q 002389 381 NIL-----HILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVILKAVASE---------ESSTMQLLSSF 446 (929)
Q Consensus 381 ~~m-----h~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~~~l~~~---------~~~~~q~~~~~ 446 (929)
..- |+=..|. .++|. .+|+.+ ..+.+|.|++=|..+-... +.-..|.-+|=
T Consensus 134 ~~~~~ge~d~~~ty~--------Al~~L-----~llg~~--~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al 198 (331)
T 3dss_B 134 AGDIWGEIDTRFSFC--------AVATL-----ALLGKL--DAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198 (331)
T ss_dssp BSSTTCCBCHHHHHH--------HHHHH-----HHHTCG--GGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHH
T ss_pred ecccCCCCchHHHHH--------HHHHH-----HhcCCC--CHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHH
Confidence 631 2333332 22222 223433 2356788888887653322 22345777776
Q ss_pred HHHhcCccccccCchhhHHHHHHHh
Q 002389 447 ILSNIGGTFSWTGEPYTVAWLVKKA 471 (929)
Q Consensus 447 ~l~~l~g~fs~sg~~~~~~~llk~a 471 (929)
+-|.+.|.....-..-+..||+.+-
T Consensus 199 ~aL~llg~~~~~~~~~~~~wL~~~Q 223 (331)
T 3dss_B 199 GFLAITSQLHQVNSDLLGWWLCERQ 223 (331)
T ss_dssp HHHHHTTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHhccccchhhHHHHHHHHHHhC
Confidence 6666777765444445667776553
No 450
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=20.51 E-value=3.5 Score=36.72 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=40.5
Q ss_pred chhhhhhhHHhhHhhhhcchhhhhhhhhcCCCchHHHH-HHhh-cchhhHHHHHhcCCCc
Q 002389 169 EETVIRASVSILTTIILANESVIEDIKKKGLRLSDLAT-ALKR-NVPEAAILIYLIKPSP 226 (929)
Q Consensus 169 ~~~v~~~~v~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~-~~~~~~vl~~l~~~~~ 226 (929)
.-++++-||.+ ..+.++++..|+.|++ +...||+++ -|.. .+..+..|..+|.-|.
T Consensus 35 ~~~~m~dPV~~-~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 35 MDTLMTDPVRL-PSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp TCSBCSSEEEE-TTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred ccCcccCCeEC-CCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 34567779988 7999999999999998 467899998 4544 3445555555554443
No 451
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.13 E-value=1.3e+03 Score=28.52 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=88.0
Q ss_pred HhHHHHHhhccChHHHHHHHHHHHhhhhccCcchhHHHhhcCccchhhhhhcCCc-hhHHHHHHHHHHHhccCchh-hHH
Q 002389 292 LCGLLDVARHQNLEELISLATILVKCIQFDGQCRKYLSEFTAVAPLACLLQSGEK-RAIMIALEFFHEILRIPRSS-AID 369 (929)
Q Consensus 292 ~~~l~~~~~~~~~~e~~~~~~~l~~c~~~d~~cr~~ia~~~~~~~~~~l~~~~~~-~~~~~~~~~~~el~~l~r~~-~~~ 369 (929)
+..|+..+...+..-+. ++.+..-+-+=|+|-+.+.+ .+++.++..++ ..|..| .+=.-|+.+.|.. +..
T Consensus 474 ~e~L~~~L~dd~~~~~~--~AalALGli~vGTgn~~ai~-----~LL~~~~e~~~e~vrR~a-algLGll~~g~~e~~~~ 545 (963)
T 4ady_A 474 YEALKEVLYNDSATSGE--AAALGMGLCMLGTGKPEAIH-----DMFTYSQETQHGNITRGL-AVGLALINYGRQELADD 545 (963)
T ss_dssp HHHHHHHHHTCCHHHHH--HHHHHHHHHHTTCCCHHHHH-----HHHHHHHHCSCHHHHHHH-HHHHHHHTTTCGGGGHH
T ss_pred HHHHHHHHhcCCHHHHH--HHHHHHhhhhcccCCHHHHH-----HHHHHHhccCcHHHHHHH-HHHHHhhhCCChHHHHH
Confidence 55677777655443231 22222222233888766653 45665555432 222222 2222355666643 555
Q ss_pred HHHHhhc-------------------c-CchhHHHHHHHHhhcccchhhHHHHHHHhhhccccCCCCCCcchHHHHHHHH
Q 002389 370 LLQRIHK-------------------E-GNINILHILKLSLQQLQSDYQLLAANLLLQLDTLENTTGKSVFTEEAMQVIL 429 (929)
Q Consensus 370 ~l~~~~~-------------------~-~~~~~mh~~l~~lq~~~~~~~~~~a~lllqld~l~~~~~~s~yreea~~~~~ 429 (929)
+++.+++ + |......-||.++..-+-+.---+|++=|=+=++++| |++..++
T Consensus 546 li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv 617 (963)
T 4ady_A 546 LITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIV 617 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHH
Confidence 6555553 1 3333455577777766555444456555555455665 5677788
Q ss_pred HHHhccCChhhhHHHHHHHHhcCccccccCchhhHHHHHHHh
Q 002389 430 KAVASEESSTMQLLSSFILSNIGGTFSWTGEPYTVAWLVKKA 471 (929)
Q Consensus 430 ~~l~~~~~~~~q~~~~~~l~~l~g~fs~sg~~~~~~~llk~a 471 (929)
+-|..+.++.+-.-+|-||-+++ ..+|.+=+-+ +|++.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~---aGn~~~~aid-~L~~L 655 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIAC---AGKGLQSAID-VLDPL 655 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHT---SSSCCHHHHH-HHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhc---cCCCcHHHHH-HHHHH
Confidence 87888888888888787777665 3455444444 45555
Done!