Query 002390
Match_columns 928
No_of_seqs 372 out of 839
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 00:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.8E-29 2E-33 236.6 14.6 115 149-263 5-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 1.4E-17 5E-22 161.6 12.7 98 154-261 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 2.4E-14 8.3E-19 130.6 11.6 94 155-259 8-101 (104)
4 1na6_A Ecorii, restriction end 95.3 0.031 1.1E-06 62.4 7.8 91 155-246 18-122 (404)
5 1vd2_A Protein kinase C, IOTA 92.9 0.21 7.3E-06 45.3 6.9 56 795-857 6-61 (89)
6 1wmh_B Partitioning defective- 92.1 0.28 9.5E-06 44.5 6.6 68 796-870 7-76 (86)
7 2kkc_A Sequestosome-1; P62, PB 91.7 0.15 5.3E-06 47.3 4.5 62 793-860 3-80 (102)
8 2ktr_A Sequestosome-1; autopha 90.2 0.24 8.2E-06 47.2 4.3 61 793-860 18-95 (117)
9 1q1o_A Cell division control p 85.6 1.6 5.4E-05 40.5 6.6 74 794-869 4-85 (98)
10 1oey_J P40-PHOX, neutrophil cy 80.6 2.1 7.3E-05 40.1 5.3 50 811-886 28-77 (107)
11 1pqs_A Cell division control p 72.9 4.8 0.00016 35.6 5.2 59 809-869 5-64 (77)
12 1wj6_A KIAA0049 protein, RSGI 68.7 8.2 0.00028 36.0 6.0 64 796-870 15-79 (101)
13 2bkf_A Zinc-finger protein NBR 66.7 12 0.00041 34.1 6.5 52 797-857 8-60 (87)
14 1oey_A P67-PHOX, neutrophil cy 62.7 23 0.00079 31.8 7.5 66 796-870 6-72 (83)
15 3iot_A Maltose-binding protein 53.5 3.5 0.00012 44.7 0.8 9 225-233 127-135 (449)
16 3cgm_A SLYD, peptidyl-prolyl C 52.5 31 0.001 33.7 7.2 100 236-352 3-110 (158)
17 2kr7_A FKBP-type peptidyl-prol 52.5 40 0.0014 32.5 7.9 105 233-352 4-119 (151)
18 2k8i_A SLYD, peptidyl-prolyl C 51.0 27 0.00093 34.5 6.6 102 236-352 3-114 (171)
19 2kfw_A FKBP-type peptidyl-prol 45.8 16 0.00056 37.0 4.2 127 236-392 3-139 (196)
20 2jng_A Cullin-7, CUL-7; P53 bi 43.3 35 0.0012 32.1 5.6 73 305-392 6-78 (105)
21 4dt4_A FKBP-type 16 kDa peptid 38.7 41 0.0014 33.4 5.7 105 235-352 24-138 (169)
22 3p8d_A Medulloblastoma antigen 36.7 50 0.0017 28.7 5.2 52 321-390 5-56 (67)
23 3pr9_A FKBP-type peptidyl-prol 34.4 1.8E+02 0.0062 28.3 9.4 105 236-352 2-123 (157)
24 3o27_A Putative uncharacterize 32.5 45 0.0015 29.2 4.2 34 228-261 31-65 (68)
25 1mhn_A SurviVal motor neuron p 31.4 48 0.0016 27.2 4.1 40 322-373 3-42 (59)
26 3s6w_A Tudor domain-containing 30.9 41 0.0014 26.9 3.5 41 322-374 1-41 (54)
27 4a4f_A SurviVal of motor neuro 30.5 46 0.0016 27.8 3.9 42 321-374 7-48 (64)
28 3qii_A PHD finger protein 20; 29.9 66 0.0023 29.2 5.0 53 321-391 20-72 (85)
29 2equ_A PHD finger protein 20-l 27.2 57 0.002 28.5 4.0 39 321-373 8-46 (74)
30 3m7a_A Uncharacterized protein 25.8 65 0.0022 31.3 4.6 46 196-244 84-140 (140)
31 2e63_A KIAA1787 protein; struc 25.2 43 0.0015 33.3 3.3 25 233-257 115-139 (170)
32 1g5v_A SurviVal motor neuron p 23.4 73 0.0025 28.7 4.1 42 321-374 9-50 (88)
33 2kbn_A Conserved protein; nucl 23.1 2.1E+02 0.0072 26.0 7.2 70 153-260 16-89 (109)
34 3pie_A 5'->3' exoribonuclease 22.4 1E+02 0.0034 39.1 6.4 49 320-376 1063-1111(1155)
35 2k75_A Uncharacterized protein 20.4 1.9E+02 0.0064 26.2 6.3 46 195-260 39-88 (106)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=5.8e-29 Score=236.55 Aligned_cols=115 Identities=29% Similarity=0.479 Sum_probs=104.5
Q ss_pred CCCCCCceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeEccchh
Q 002390 149 APNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS 228 (928)
Q Consensus 149 ~~~~~~~~~F~K~LT~SDV~~~GrfsVPk~~AE~~FP~Ld~s~~~p~q~L~~~Dl~Gk~W~FR~iyrg~pkrhlLTtGWs 228 (928)
...+...++|+|+||+|||+++++|+||+++|++|||.++.++..++++|.++|.+|++|+|||+||+++++|+||+||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChH
Confidence 34566788999999999999999999999999999999987766788999999999999999999999999999999999
Q ss_pred hhhhccCCcCCCEEEEEEcc--CCeEEEEEEecCCCC
Q 002390 229 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRATRPQ 263 (928)
Q Consensus 229 ~FVr~K~L~aGDsVvF~R~e--~GeL~VGIRRa~r~~ 263 (928)
.||++|+|++||+|+|+|.+ +++|+|++||+.++.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999985 468999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.73 E-value=1.4e-17 Score=161.59 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=86.6
Q ss_pred CceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeEccchhhhhhc
Q 002390 154 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 233 (928)
Q Consensus 154 ~~~~F~K~LT~SDV~~~GrfsVPk~~AE~~FP~Ld~s~~~p~q~L~~~Dl~Gk~W~FR~iyrg~pkrhlLTtGWs~FVr~ 233 (928)
..++|.|+||+||+.++.+|.||+++++.|||..+ .++.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 35699999999999887789999999999999753 46778887 6999999999974 69999999999999
Q ss_pred cCCcCCCEEEEEEccCC--eEEEEEEecCC
Q 002390 234 KRLVAGDSVLFIWNEKN--QLLLGIRRATR 261 (928)
Q Consensus 234 K~L~aGDsVvF~R~e~G--eL~VGIRRa~r 261 (928)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998655 69999999863
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.54 E-value=2.4e-14 Score=130.63 Aligned_cols=94 Identities=22% Similarity=0.397 Sum_probs=82.3
Q ss_pred ceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeEccchhhhhhcc
Q 002390 155 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 234 (928)
Q Consensus 155 ~~~F~K~LT~SDV~~~GrfsVPk~~AE~~FP~Ld~s~~~p~q~L~~~Dl~Gk~W~FR~iyrg~pkrhlLTtGWs~FVr~K 234 (928)
.+.|.|+|+++|. ..++.||+++++.+.+.+ ..++.++|..|++|++++.+++ +++.|++||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4689999999994 459999999998865543 2478889999999999999874 4689999999999999
Q ss_pred CCcCCCEEEEEEccCCeEEEEEEec
Q 002390 235 RLVAGDSVLFIWNEKNQLLLGIRRA 259 (928)
Q Consensus 235 ~L~aGDsVvF~R~e~GeL~VGIRRa 259 (928)
+|++||.|+|....+..+.|.|-|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999999875
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.25 E-value=0.031 Score=62.42 Aligned_cols=91 Identities=23% Similarity=0.360 Sum_probs=67.5
Q ss_pred ceeEEEeeccccCCCCC----ceeeecchhhhhCCCCCCC-CCCCceEEEEE--ecCCCeEEEEEEEeC------CCCce
Q 002390 155 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPPLDYS-QTPPAQELIAR--DLHDNEWKFRHIFRG------QPKRH 221 (928)
Q Consensus 155 ~~~F~K~LT~SDV~~~G----rfsVPk~~AE~~FP~Ld~s-~~~p~q~L~~~--Dl~Gk~W~FR~iyrg------~pkrh 221 (928)
...|+|.|++.|++..| +|-+|+..+..+||.|+.. ...+.+.+.+. |...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 67899999999998764 7999998899999998833 33455555543 444455599999996 56679
Q ss_pred eEccchh-hhhhccCCcCCCEEEEEE
Q 002390 222 LLTTGWS-VFVSAKRLVAGDSVLFIW 246 (928)
Q Consensus 222 lLTtGWs-~FVr~K~L~aGDsVvF~R 246 (928)
.||. |. .+.-.....+||.++|-+
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~ 122 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAF 122 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEE
Confidence 9973 32 344457788999999875
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.90 E-value=0.21 Score=45.35 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=42.1
Q ss_pred cceEEEeecCcceeeeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEec
Q 002390 795 RTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL 857 (928)
Q Consensus 795 ~~fVKV~m~G~iGRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLV 857 (928)
..=||++-.|. -|.+.+..--+|++|..+|.++|.+.. +..+++.|.|.|||+.-+
T Consensus 6 ~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~------~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 6 QVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDN------EQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp CEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCS------SCCEEEEECCSSSCCEEC
T ss_pred eEEEEEEeCCe-EEEEECCCCCCHHHHHHHHHHHhCCCC------CCeEEEEEECCCCCcccc
Confidence 35678888884 234444445799999999999999642 345999999999997544
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=92.14 E-value=0.28 Score=44.50 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=49.5
Q ss_pred ceEEEeecCccee-eeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEecCCc-chhhhhccee
Q 002390 796 TFVKVHKSGSFGR-SLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDD-PWQEFVNNVG 870 (928)
Q Consensus 796 ~fVKV~m~G~iGR-kIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLVGDv-PWe~Fv~svk 870 (928)
.=||.+-++.+=| ++|-..-.+|++|..-|+++|.+. ...+++.|.|.|||++-.-++ =..+=+.+++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence 4577777775544 566667789999999999999852 235999999999999977543 3444444554
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=91.70 E-value=0.15 Score=47.31 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=44.8
Q ss_pred CCcceEEEeecC-----cceeeeccCC-----------CCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEe
Q 002390 793 PTRTFVKVHKSG-----SFGRSLDISK-----------FSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLL 856 (928)
Q Consensus 793 ~~~~fVKV~m~G-----~iGRkIDL~~-----------~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mL 856 (928)
..++=||+|..| .--|++-+.. -.+|++|+..+.++|.. | .+..|++.|.|.|||..-
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l---~~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---L---RPGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S---CSSCEEEEEECTTCCEEE
T ss_pred CceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc---c---CCCcEEEEEECCCCCEEE
Confidence 456789999875 2345555432 24899999999999962 1 133599999999999876
Q ss_pred cCCc
Q 002390 857 LGDD 860 (928)
Q Consensus 857 VGDv 860 (928)
+.++
T Consensus 77 iSsD 80 (102)
T 2kkc_A 77 FSSD 80 (102)
T ss_dssp ECSH
T ss_pred ecCH
Confidence 6544
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=90.19 E-value=0.24 Score=47.17 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCcceEEEeecC-----cceeeeccC-----------CCCCHHHHHHHHHHHhc-CCCCcCCCCCCceEEEEEcCCCceE
Q 002390 793 PTRTFVKVHKSG-----SFGRSLDIS-----------KFSSYDELRSELARMFG-LEGQLEDPQRSGWQLVFVDRENDVL 855 (928)
Q Consensus 793 ~~~~fVKV~m~G-----~iGRkIDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~d~~~s~~~lvYeD~EGD~m 855 (928)
..+.=||++..| .==|++-+. .-.+|++|+..+.++|. +. +..|++.|.|.|||+.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 446789999975 234555543 14599999999999995 32 2359999999999987
Q ss_pred ecCCc
Q 002390 856 LLGDD 860 (928)
Q Consensus 856 LVGDv 860 (928)
-+..+
T Consensus 91 tISsD 95 (117)
T 2ktr_A 91 AFSSD 95 (117)
T ss_dssp EECSH
T ss_pred EecCH
Confidence 66543
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=85.60 E-value=1.6 Score=40.48 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=53.7
Q ss_pred CcceEEEeecC-----cce--eeeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEecC-Ccchhhh
Q 002390 794 TRTFVKVHKSG-----SFG--RSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLG-DDPWQEF 865 (928)
Q Consensus 794 ~~~fVKV~m~G-----~iG--RkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLVG-DvPWe~F 865 (928)
.+.-|||+-.. +++ |.|=+..--+|++|...+.+-|++.. -++- ....+|-|+|.|||+...+ |+=|++-
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~~i-~~~~klkYkDEdGD~Vtl~sddDl~~A 81 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NNNI-SPITKIKYQDEDGDFVVLGSDEDWNVA 81 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SSCC-CCCCCEEEECSSSCEEEECSHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cccc-cceeEEEEEcCCCCEEEEcCHHHHHHH
Confidence 34567887553 134 77778888899999999999999751 1111 2347999999999987665 5678887
Q ss_pred hcce
Q 002390 866 VNNV 869 (928)
Q Consensus 866 v~sv 869 (928)
+.++
T Consensus 82 ~e~~ 85 (98)
T 1q1o_A 82 KEML 85 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=80.60 E-value=2.1 Score=40.10 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=42.6
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEecCCcchhhhhcceeEEEEeChhhhhccccc
Q 002390 811 DISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEVQQMGKG 886 (928)
Q Consensus 811 DL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLVGDvPWe~Fv~svkrirIl~~~e~~~m~~~ 886 (928)
||+.--.|.||..-..+-|.. .+-.|-|.|.|||+ ||||+.+++.=|-++
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~---------~DIaLNYrD~eGDL-----------------IrilddeDv~lmi~~ 77 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR---------EDIALNYRDAEGDL-----------------VRLLSDEDVALMVRQ 77 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC---------SSEEEEEECTTSCE-----------------EECCSHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHhcc---------cceeeeeecCCCCE-----------------EEEcchHHHHHHHHH
Confidence 567778999999999999983 24799999999998 689999999888665
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=72.95 E-value=4.8 Score=35.65 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=43.1
Q ss_pred eeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEec-CCcchhhhhcce
Q 002390 809 SLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL-GDDPWQEFVNNV 869 (928)
Q Consensus 809 kIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLV-GDvPWe~Fv~sv 869 (928)
.|=+..--+|++|...+.+-|+.. ..+..+...+|-|+|.|||+... .|.=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~--~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT--TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc--ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 344455568999999999999974 11211345799999999998655 566788877765
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=68.70 E-value=8.2 Score=36.01 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=49.2
Q ss_pred ceEEEeecC-cceeeeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEecCCcchhhhhccee
Q 002390 796 TFVKVHKSG-SFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVG 870 (928)
Q Consensus 796 ~fVKV~m~G-~iGRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLVGDvPWe~Fv~svk 870 (928)
.=+||+-.| ..=--|.-..-.++++|...+..+|+++ .+++.|-|.|||-.-| .-+.+|-+.+|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI--NSQGEYEEALK 79 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC--CSHHHHHHHHH
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE--ecHHHHHHHHH
Confidence 457899889 4333565555779999999999999984 3799999999999887 55777665544
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=66.73 E-value=12 Score=34.12 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=40.6
Q ss_pred eEEEeecC-cceeeeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEcCCCceEec
Q 002390 797 FVKVHKSG-SFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL 857 (928)
Q Consensus 797 fVKV~m~G-~iGRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EGD~mLV 857 (928)
=+||+-.| ..---|.-..-.++++|...+..+|+++ ++++.|-|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 46888888 4333464445679999999999999984 3799999999997655
No 14
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=62.69 E-value=23 Score=31.82 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=52.7
Q ss_pred ceEEEeecCcceeeeccCCCCCHHHHHHHHHHHhcCCCCcCCCCCCceEEEEEc-CCCceEecCCcchhhhhccee
Q 002390 796 TFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVD-RENDVLLLGDDPWQEFVNNVG 870 (928)
Q Consensus 796 ~fVKV~m~G~iGRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD-~EGD~mLVGDvPWe~Fv~svk 870 (928)
.=|||+-. +---|.+..=-+|.+|+..|.+-+.+.+. .-+|-|.| .+|.|++.+|.=++.-...|+
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~ 72 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKDAWGQVK 72 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHHHHTTCB
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHHHHHhcc
Confidence 45677766 77778888888999999999999987532 24899999 578888999999998877754
No 15
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=53.54 E-value=3.5 Score=44.71 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=5.3
Q ss_pred cchhhhhhc
Q 002390 225 TGWSVFVSA 233 (928)
Q Consensus 225 tGWs~FVr~ 233 (928)
+-|.+|+..
T Consensus 127 ~Twdel~~~ 135 (449)
T 3iot_A 127 KTWEEIPAL 135 (449)
T ss_dssp SBGGGHHHH
T ss_pred CCHHHHHHH
Confidence 347777653
No 16
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=52.55 E-value=31 Score=33.71 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred CcCCCEEEE-EEc-cCCeEEEEEEecCCCCCCCCCccccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCC------Ccc
Q 002390 236 LVAGDSVLF-IWN-EKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASP------SEF 307 (928)
Q Consensus 236 L~aGDsVvF-~R~-e~GeL~VGIRRa~r~~~~~pssv~ss~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~------sEF 307 (928)
.+.||.|.+ |+. .+|+.+-.-+ . . -.+....+-. -+.+|......|..++|.--|.... --+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-------~-f~~G~g~vip-G~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-------S-YLHGHRNLIP-GLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-------E-EETTSSSSCH-HHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-------E-EEECCCCcCh-HHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 568898876 332 5777654433 0 0 0111222222 2566767777888888887665432 346
Q ss_pred ccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeec
Q 002390 308 VIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 352 (928)
Q Consensus 308 VVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd 352 (928)
.||++.|-+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 7888776322 37999999985 45542 567899999975
No 17
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=52.54 E-value=40 Score=32.47 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=64.8
Q ss_pred ccCCcCCCEEEE-EEc--c-CCeEEEEEEecCCCCCCCCCccc-cCCcccccHHHHHHHHHHcCCcEEEEEcCCCC----
Q 002390 233 AKRLVAGDSVLF-IWN--E-KNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS---- 303 (928)
Q Consensus 233 ~K~L~aGDsVvF-~R~--e-~GeL~VGIRRa~r~~~~~pssv~-ss~sm~~gvlaaAa~aaat~~~F~V~Y~PRas---- 303 (928)
.+..+.||.|.+ |.. . +|+.+-.-+. . .|.... ....+ +--+.+|......|..++|.--|...
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~-~-----~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS-K-----EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT-T-----CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC-C-----cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 456788999977 332 4 7776544321 1 132222 22222 22356676677788888887655432
Q ss_pred --CCccccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeec
Q 002390 304 --PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 352 (928)
Q Consensus 304 --~sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd 352 (928)
..-+.||+..| . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 24467888877 1 247999999985 45543 467899999975
No 18
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=51.01 E-value=27 Score=34.53 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=62.7
Q ss_pred CcCCCEEEE-EEc--cCCeEEEEEEecCCCCCCCCCcc-ccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCC------C
Q 002390 236 LVAGDSVLF-IWN--EKNQLLLGIRRATRPQTVMPSSV-LSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASP------S 305 (928)
Q Consensus 236 L~aGDsVvF-~R~--e~GeL~VGIRRa~r~~~~~pssv-~ss~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~------s 305 (928)
.+.||.|.+ |.. .+|+.+-.-+. . .|..+ +....+-.| +.+|......|..++|..-|-... .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-~-----~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-S-----APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCS-S-----SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccC-C-----cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 578999877 332 47776554331 1 12222 222223223 566777777888888887665433 3
Q ss_pred ccccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeec
Q 002390 306 EFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 352 (928)
Q Consensus 306 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd 352 (928)
-+.||++.|-. ...+.+||+|.+ ++++. + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~---~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG---VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT---SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc---ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 35788887632 136999999985 55553 2 6899999974
No 19
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=45.85 E-value=16 Score=37.02 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=73.9
Q ss_pred CcCCCEEEE-EE--ccCCeEEEEEEecCCCCCCCCCccc-cCCcccccHHHHHHHHHHcCCcEEEEEcCCCC------CC
Q 002390 236 LVAGDSVLF-IW--NEKNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRAS------PS 305 (928)
Q Consensus 236 L~aGDsVvF-~R--~e~GeL~VGIRRa~r~~~~~pssv~-ss~sm~~gvlaaAa~aaat~~~F~V~Y~PRas------~s 305 (928)
.+.||.|.+ |+ .++|+.+-.-+. . .|..+. ....+ +--+.+|..-...|..++|..-|-.. ..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-~-----~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-S-----APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT-T-----SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC-C-----CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 678999877 33 357876554321 1 232222 22222 22356666667788888888665433 23
Q ss_pred ccccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCcccc
Q 002390 306 EFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLW 385 (928)
Q Consensus 306 EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~~~~~~~RVSPW 385 (928)
-+.||++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+- .+.|...-|-+++.- -.
T Consensus 76 V~~vp~~~f~~---~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~~-----------~V~vD~NHPLAGk~L----~F 132 (196)
T 2kfw_A 76 VQRVPKDVFMG---VDELQVGMRFLA--ETDQG---PVPVEITAVEDD-----------HVVVDGNHMLAGQNL----KF 132 (196)
T ss_dssp CEEECGGGCCC---SSCCCTTCEEEE--EETTE---EEEEEBCCCCSS-----------SEEECCCCTTSCCCC----EE
T ss_pred EEEEEHHHCCC---ccCcccCCEEEE--ECCCC---cEEEEEEEEcCC-----------EEEEeCCCCCCCCeE----EE
Confidence 46788876531 136999999974 55552 678999999751 244555555554332 34
Q ss_pred ccccCCC
Q 002390 386 EIEPLTT 392 (928)
Q Consensus 386 EIEpv~~ 392 (928)
+||.+.-
T Consensus 133 ~vev~~v 139 (196)
T 2kfw_A 133 NVEVVAI 139 (196)
T ss_dssp EEEECCC
T ss_pred EEEEEEe
Confidence 6666643
No 20
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=43.29 E-value=35 Score=32.06 Aligned_cols=73 Identities=33% Similarity=0.376 Sum_probs=44.1
Q ss_pred CccccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCccc
Q 002390 305 SEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSL 384 (928)
Q Consensus 305 sEFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~~~~~~~RVSP 384 (928)
++|- ..+.|..=+. .+..+|||+||.=.-||-+. -=.|++. ++. + .-| .+||.|.... +.-.|+-
T Consensus 6 sdF~-s~~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~--Gl~-----~vQv~W~~~G---~TyWV~~ 70 (105)
T 2jng_A 6 SEFA-SGNTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N--GVP-----PVQVFWESTG---RTYWVHW 70 (105)
T ss_dssp GGSS-SSHHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T--TSS-----EEEEEETTTT---EEEEEEG
T ss_pred hhcc-cchhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C--CCc-----cceeeehhcC---ceEEEEe
Confidence 4554 2345655555 46999999999633333221 2368887 442 2 222 8999999664 3455666
Q ss_pred cccccCCC
Q 002390 385 WEIEPLTT 392 (928)
Q Consensus 385 WEIEpv~~ 392 (928)
=.||.+..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 67777743
No 21
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=38.74 E-value=41 Score=33.40 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCcCCCEEEE-EEc--cCCeEEEEEEecCCCCCCCCCccc-cCCcccccHHHHHHHHHHcCCcEEEEEcCCCCCCc----
Q 002390 235 RLVAGDSVLF-IWN--EKNQLLLGIRRATRPQTVMPSSVL-SSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSE---- 306 (928)
Q Consensus 235 ~L~aGDsVvF-~R~--e~GeL~VGIRRa~r~~~~~pssv~-ss~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~sE---- 306 (928)
..+.||.|.+ |+. ++|+.+=.-+... .|.... ....+ +--+.+|......|..++|..-|.....+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~-----~P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNG-----KPALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHT-----SCEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCC-----CCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5789999987 343 5787655432111 122221 22222 22366777777888889998776654433
Q ss_pred --cccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeec
Q 002390 307 --FVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 352 (928)
Q Consensus 307 --FVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd 352 (928)
+.||++.|-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 56788776422 36899999876 55542 467899999985
No 22
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=36.69 E-value=50 Score=28.66 Aligned_cols=52 Identities=10% Similarity=0.216 Sum_probs=38.9
Q ss_pred CCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCccccccccC
Q 002390 321 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPL 390 (928)
Q Consensus 321 ~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWEIEpv 390 (928)
..|.+|+++-..+ + | .++|-++|++|... ....|..++.. .+.|..=+|.|+
T Consensus 5 ~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~ 56 (67)
T 3p8d_A 5 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAF 56 (67)
T ss_dssp CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEEC
T ss_pred cccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccC
Confidence 5799999999999 3 3 37999999999852 45899999832 355655555554
No 23
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=34.38 E-value=1.8e+02 Score=28.31 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=61.8
Q ss_pred CcCCCEEEEE-Ec-cCCeEEEEEEec-----CC--C-CCCCCCcc-ccCCcccccHHHHHHHHHHcCCcEEEEEcCCCCC
Q 002390 236 LVAGDSVLFI-WN-EKNQLLLGIRRA-----TR--P-QTVMPSSV-LSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASP 304 (928)
Q Consensus 236 L~aGDsVvF~-R~-e~GeL~VGIRRa-----~r--~-~~~~pssv-~ss~sm~~gvlaaAa~aaat~~~F~V~Y~PRas~ 304 (928)
++.||.|.+. .. -+|+++=.-+.. .- . ....|..+ +....+ +--+.+|......|..++|.--|-...
T Consensus 2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~v-i~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQV-LPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSS-CHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEECCEEEEeccccccccccccccccCCCCEEEEECCCcH-HHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 4678888773 22 277766543321 00 0 00123322 222222 223678888888999999986655433
Q ss_pred C------ccccchHHHHHHHhcCCCccccEEEEeeeccccccceeeeEEEEeec
Q 002390 305 S------EFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 352 (928)
Q Consensus 305 s------EFVVp~~kyvkA~~~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd 352 (928)
. =..||++++-+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 81 G~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 81 GKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred CCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2 267888877543 245788999975 332 589999985
No 24
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=32.49 E-value=45 Score=29.18 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=29.5
Q ss_pred hhhhhccCCcCCCEEEEEEc-cCCeEEEEEEecCC
Q 002390 228 SVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRATR 261 (928)
Q Consensus 228 s~FVr~K~L~aGDsVvF~R~-e~GeL~VGIRRa~r 261 (928)
.+++++-+|+.||.+...-+ .+|++.++.+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999998876 58999999999553
No 25
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.41 E-value=48 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCC
Q 002390 322 RVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDES 373 (928)
Q Consensus 322 ~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~ 373 (928)
.|.+|+.+-..|..+. .||.++|+++...+ ....|.-.+=
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~~~---------~~~~V~f~DY 42 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDFKR---------ETCVVVYTGY 42 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEETTT---------TEEEEEETTT
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEcC
Confidence 6999999999994332 79999999996421 2456776553
No 26
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=30.86 E-value=41 Score=26.94 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=28.2
Q ss_pred CCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCC
Q 002390 322 RVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDEST 374 (928)
Q Consensus 322 ~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~ 374 (928)
.|.+|+.+-..|..+. .||.++|.+|...+ ....|...+=+
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~~~---------~~~~V~fvDYG 41 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHSSG---------MTAVVKFIDYG 41 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--CC---------SEEEEEETTTC
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeCCC---------CEEEEEEEccC
Confidence 4999999999994433 79999999996321 24566665543
No 27
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.49 E-value=46 Score=27.76 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCC
Q 002390 321 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDEST 374 (928)
Q Consensus 321 ~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~ 374 (928)
..|.+|+.+...|..+. .||.++|.+|...+ ....|...+=+
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 47999999999994333 79999999998421 24678777653
No 28
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=29.92 E-value=66 Score=29.17 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCCCCCCCCCccccccccCC
Q 002390 321 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 391 (928)
Q Consensus 321 ~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~~~~~~~RVSPWEIEpv~ 391 (928)
..|.+|+++-..+ + | .++|-+||++|... ....|.+++.. .+.|.+=+|.|+.
T Consensus 20 ~~f~vGd~VlArW-~-D--~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 20 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp -CCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEe-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 4799999999999 3 3 37999999999852 36899999843 3456655665553
No 29
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.17 E-value=57 Score=28.51 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCC
Q 002390 321 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDES 373 (928)
Q Consensus 321 ~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~ 373 (928)
..|.+|+++.-.|. |. .||.+||++|.. + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws--Dg--~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT--DC--RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS--SS--SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC--CC--CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 32 799999999963 1 2468888865
No 30
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=25.80 E-value=65 Score=31.26 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=32.1
Q ss_pred eEEEEEecCCCeEEEEEEE---------eCCCCceeE--ccchhhhhhccCCcCCCEEEE
Q 002390 196 QELIARDLHDNEWKFRHIF---------RGQPKRHLL--TTGWSVFVSAKRLVAGDSVLF 244 (928)
Q Consensus 196 q~L~~~Dl~Gk~W~FR~iy---------rg~pkrhlL--TtGWs~FVr~K~L~aGDsVvF 244 (928)
.++.+.|..|++=....-- ...+-+|+| ..||.. +.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~---~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAA---RLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHH---HHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHH---HcCCCCCCEEeC
Confidence 5688888888766554311 112346998 688775 899999999875
No 31
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.22 E-value=43 Score=33.31 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.9
Q ss_pred ccCCcCCCEEEEEEccCCeEEEEEE
Q 002390 233 AKRLVAGDSVLFIWNEKNQLLLGIR 257 (928)
Q Consensus 233 ~K~L~aGDsVvF~R~e~GeL~VGIR 257 (928)
-..|++||.|-|+++.+|+|.+.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 3467899999999999999999874
No 32
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.39 E-value=73 Score=28.66 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=30.8
Q ss_pred CCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCC
Q 002390 321 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDEST 374 (928)
Q Consensus 321 ~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~ 374 (928)
..|.+|+.+...|..+. .||.++|.+|...+ ....|.-.+=+
T Consensus 9 ~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~---------~~~~V~fiDYG 50 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDG---CIYPATIASIDFKR---------ETCVVVYTGYG 50 (88)
T ss_dssp CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT---------TEEEEEETTTC
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEecCCC---------CEEEEEEecCC
Confidence 47999999999994332 79999999997421 24567776544
No 33
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=23.15 E-value=2.1e+02 Score=25.97 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCceeEEEeeccccCCCCCceeeecchhhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeEccchhhhhh
Q 002390 153 QPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVS 232 (928)
Q Consensus 153 ~~~~~F~K~LT~SDV~~~GrfsVPk~~AE~~FP~Ld~s~~~p~q~L~~~Dl~Gk~W~FR~iyrg~pkrhlLTtGWs~FVr 232 (928)
....++.|+++..+..+ +...+.+.+.|.+| +.|++.|+.. .
T Consensus 16 ~~v~v~~~V~~~~~~~~----------------------~~~~~~~~l~DeTG---~I~~t~W~~~-------------~ 57 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTH----------------------ESISQVGLLGDETG---IIKFTIWKNA-------------E 57 (109)
T ss_dssp CEEEEEEEEEEEEECCC----------------------SSEEEEEEEECTTC---CEEEEEEGGG-------------C
T ss_pred CcEEEEEEEEEeEcCCC----------------------CeEEEEEEEECCCC---eEEEEEECcc-------------c
Confidence 34678889888776322 11246689999999 4777777532 2
Q ss_pred ccCCcCCCEEEEEEc----cCCeEEEEEEecC
Q 002390 233 AKRLVAGDSVLFIWN----EKNQLLLGIRRAT 260 (928)
Q Consensus 233 ~K~L~aGDsVvF~R~----e~GeL~VGIRRa~ 260 (928)
...|++||+|.+.-. =+|.+.|.+-|..
T Consensus 58 ~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~ 89 (109)
T 2kbn_A 58 LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNS 89 (109)
T ss_dssp CCCCCTTCEEEEEEEEEEEETTEEEEEECSSS
T ss_pred ccccCCCCEEEEEEEEEEEECCEEEEEECCce
Confidence 458899999998632 3888888776543
No 34
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=22.41 E-value=1e+02 Score=39.11 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.3
Q ss_pred cCCCccccEEEEeeeccccccceeeeEEEEeecCCCCCCCCCCceeeEEeeCCCCCC
Q 002390 320 HTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAG 376 (928)
Q Consensus 320 ~~~ws~GMRFrM~fEtEdss~rry~GTI~gvsd~DP~rWP~S~WR~LqV~WDe~~~~ 376 (928)
...+..|+||.|.=+.-.-+. -..|||+||.... .=.+|+|=||++=.+
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~ 1111 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIG-------KNVSIQVLFDNEIIA 1111 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCC-------CceEEEEEeccCccC
Confidence 456999999998654322221 2489999998642 246899999988544
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=20.44 E-value=1.9e+02 Score=26.22 Aligned_cols=46 Identities=17% Similarity=0.061 Sum_probs=34.8
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCCceeEccchhhhhhccCCcCCCEEEEEEc----cCCeEEEEEEecC
Q 002390 195 AQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAT 260 (928)
Q Consensus 195 ~q~L~~~Dl~Gk~W~FR~iyrg~pkrhlLTtGWs~FVr~K~L~aGDsVvF~R~----e~GeL~VGIRRa~ 260 (928)
..++.+.|.+| +.+++.|+.. |++||+|.+... =+|.+.+.+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 45789999999 5788888543 899999998743 3788887776543
Done!