BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002391
(928 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 128/325 (39%), Gaps = 63/325 (19%)
Query: 592 EREFKILNLLDFTSKRKRMSVIVRDE---DGQILLLCKGADSIIFDRLSK---NGR---M 642
+R KI+ + F S K I +E + + LL+ KGA I DR S NG +
Sbjct: 477 DRNPKIVEI-PFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPL 535
Query: 643 YEEATTKLLNEY---GEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHV 699
E+ N Y G G R L + L E +Y+ AD
Sbjct: 536 KEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNE--------GYPFDADE------- 580
Query: 700 SDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLR 759
+ DL VG A+ D + VP + K AG+K+ ++TGD TA I ++
Sbjct: 581 PNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS 640
Query: 760 QGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALIIEG---KT 816
+G + I A + NI + N P A A ++ G K
Sbjct: 641 EGNETI-------------EDIAARLNIPIGQVN----------PRDAKACVVHGSDLKD 677
Query: 817 LAYALEDDMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGM 876
L+ + DD+ H+ ++ R SP+QK ++ + G GDG ND
Sbjct: 678 LSTEVLDDILHYH-------TEIVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPA 729
Query: 877 IQEADIGIGISGVEGMQIVLSGHDM 901
+++ADIG+ + G+ G + DM
Sbjct: 730 LKKADIGVAM-GISGSDVSKQAADM 753
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG TI SDKTGTLT N+M
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM 391
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 115/506 (22%), Positives = 178/506 (35%), Gaps = 136/506 (26%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG TI SDKTGTLT N+M
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRM-------------------------------------- 361
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
H S ++I E T N G +F+ + WL RI
Sbjct: 362 -TVAHMWSDNQIH-EADTTENQ--------SGVSFDKT---SATWLA---------LSRI 399
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEA-AFLVAAREFGFEFYRRTQSSVFIRERYPPKG 588
+C+ A+ + N+E + A + D + + L+ E + +RERY
Sbjct: 400 AGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKE------MRERYT--- 450
Query: 589 QPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLS------KNGRM 642
+ VE F N + + + R LL+ KGA I DR S K +
Sbjct: 451 KIVEIPFNSTNKYQLSIHKNPNTAEPRH-----LLVMKGAPERILDRCSSILIHGKEQPL 505
Query: 643 YEEATTKLLNEY---GEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHV 699
EE N Y G G R L + L + ++ +F + D
Sbjct: 506 DEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPE-GFQFDTDDVNFPLD-------- 556
Query: 700 SDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLR 759
+L VG ++ D + VP + K AG+K+ ++TGD TA I ++
Sbjct: 557 ------NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS 610
Query: 760 QGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALIIEGKTL-- 817
+G E V+D SQ+ +P A A ++ G L
Sbjct: 611 EG------------------NETVEDIAARLNIPVSQV-----NPRDAKACVVHGSDLKD 647
Query: 818 --AYALEDDMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVG 875
+ L+D +K+H ++ R SP+QK ++ + G GDG ND
Sbjct: 648 MTSEQLDDILKYH--------TEIVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSP 698
Query: 876 MIQEADIGIGISGVEGMQIVLSGHDM 901
++ADIG+ + G+ G + DM
Sbjct: 699 ASKKADIGVAM-GIAGSDVSKQAADM 723
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 154 EKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVK 202
E++ VGD+V+V+ PADL +S++ C V+ +L GE+ + +
Sbjct: 158 EEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQTR 202
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 149/394 (37%), Gaps = 76/394 (19%)
Query: 522 TLLLFFRILAICHTAIPELNEETGNLTYEAESPDEA-AFLVAAREFGFEFYRRTQSSVFI 580
T L RI +C+ A+ + N+E + A + D + + L+ E + +
Sbjct: 386 TWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKE------M 439
Query: 581 RERYPPKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLS--- 637
RERY + VE F N + + + R LL+ KGA I DR S
Sbjct: 440 RERYT---KIVEIPFNSTNKYQLSIHKNPNTAEPRH-----LLVMKGAPERILDRCSSIL 491
Query: 638 ---KNGRMYEEATTKLLNEY---GEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGAD 691
K + EE N Y G G R L + L + ++ +F + D
Sbjct: 492 IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPE-GFQFDTDDVNFPLD 550
Query: 692 REATLEHVSDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINI 751
+L VG ++ D + VP + K AG+K+ ++TGD TA I
Sbjct: 551 --------------NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI 596
Query: 752 GFACSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALI 811
++ +G E V+D SQ+ +P A A +
Sbjct: 597 AKGVGIISEG------------------NETVEDIAARLNIPVSQV-----NPRDAKACV 633
Query: 812 IEGKTL----AYALEDDMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAI 867
+ G L + L+D +K+H ++ R SP+QK ++ + G
Sbjct: 634 VHGSDLKDMTSEQLDDILKYH--------TEIVFARTSPQQKLIIVEGCQR-QGAIVAVT 684
Query: 868 GDGANDVGMIQEADIGIGISGVEGMQIVLSGHDM 901
GDG ND ++ADIG+ + G+ G + DM
Sbjct: 685 GDGVNDSPASKKADIGVAM-GIAGSDVSKQAADM 717
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 154 EKIQVGDIVKVEKDQFFPADLLFLSSSYEDGICYVETMNLDGETNLKVK 202
E++ VGD+V+V+ PADL +S++ C V+ +L GE+ + +
Sbjct: 152 EEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQTR 196
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 129/361 (35%), Gaps = 84/361 (23%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I SDKTGTLT NQM + K ID + + S
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQM---------------------SVCKMFIIDKVDGDFCS 379
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
N + +GS E + ND + I+ F D L+ I
Sbjct: 380 LN-EFSITGSTYAPEGEVLKND-----KPIRSGQF----------------DGLVELATI 417
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 418 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 474
Query: 590 PVEREFKILNLLDFTSKRKRMSVIV------RDEDGQILLLCKGADSIIFDRLS----KN 639
+ + K L+F+ RK MSV R G + + KGA + DR +
Sbjct: 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGT 533
Query: 640 GRM-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADR 692
R+ +E ++ E+G LR LALA +
Sbjct: 534 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR------------------E 575
Query: 693 EATLEHVSDMME--KDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAIN 750
E L+ S ME DL VG + D +K V I AG+++ ++TGD TAI
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 751 I 751
I
Sbjct: 636 I 636
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 129/361 (35%), Gaps = 84/361 (23%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I SDKTGTLT NQM + K ID + + S
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQM---------------------SVCKMFIIDKVDGDFCS 378
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
N + +GS E + ND + I+ F D L+ I
Sbjct: 379 LN-EFSITGSTYAPEGEVLKND-----KPIRSGQF----------------DGLVELATI 416
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 473
Query: 590 PVEREFKILNLLDFTSKRKRMSVIV------RDEDGQILLLCKGADSIIFDRLS----KN 639
+ + K L+F+ RK MSV R G + + KGA + DR +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGT 532
Query: 640 GRM-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADR 692
R+ +E ++ E+G LR LALA +
Sbjct: 533 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR------------------E 574
Query: 693 EATLEHVSDMME--KDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAIN 750
E L+ S ME DL VG + D +K V I AG+++ ++TGD TAI
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 751 I 751
I
Sbjct: 635 I 635
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 112/494 (22%), Positives = 166/494 (33%), Gaps = 131/494 (26%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I SDKTGTLT NQM K + G DL N S
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDG----------------DLCLLNEFS 383
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
+GS E + ND ++ D L+ I
Sbjct: 384 V------TGSTYAPEGEVLKNDKP---------------------VRSGQYDGLVELATI 416
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 417 CALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 473
Query: 590 PVEREFKILNLLDFTSKRKRMSVIVRDEDGQIL----LLCKGADSIIFDRLS--KNGRM- 642
+ + K L+F+ RK MSV + + KGA + DR + + G
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 533
Query: 643 ------YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREA 694
+E ++ E+G LR LALA + K + + D
Sbjct: 534 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTP-----------PKREEMVLDDSTK 582
Query: 695 TLEHVSDMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFA 754
+E+ E DL VG + D +K V I AG+++ ++TGD TAI I
Sbjct: 583 FMEY-----ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI--- 634
Query: 755 CSLLRQGMKQICITALNSDSVGKAAKEAVKDNILMQITNASQMIKLERDPHAAYALIIEG 814
++I I N D +A G
Sbjct: 635 -------CRRIGIFGENEDVADRAYT---------------------------------G 654
Query: 815 KTLAYALEDDMKHHFLGLAVECASVICC--RVSPKQKALVTRLVKEGTGKTTLAIGDGAN 872
+ DD+ L E CC RV P K+ + + + + T GDG N
Sbjct: 655 REF-----DDLP---LAEQREACRRACCFARVEPTHKSKIVEYL-QSFDEITAMTGDGVN 705
Query: 873 DVGMIQEADIGIGI 886
D +++A+IGI +
Sbjct: 706 DAPALKKAEIGIAM 719
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 64/258 (24%)
Query: 669 LDESEYSAWNSEFQKAKSSIGADREATLEHVSDMM-EKD------------------LIL 709
LDE W FQ A S+G E L + EKD L
Sbjct: 540 LDEQ----WREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSF 595
Query: 710 VGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITA 769
G ++ D + VP + K AG+++ ++TGD TA I + ++ +G + + A
Sbjct: 596 AGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIA 655
Query: 770 ----LNSDSVG-KAAKEAVKDNILMQITNASQMIK-LERDPHAAYALIIEGKTLAYALED 823
+ D V K A+ V + + ++ + S++++ L P +A
Sbjct: 656 ARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFA-------------- 701
Query: 824 DMKHHFLGLAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIG 883
R SP+QK ++ + G GDG ND +++ADIG
Sbjct: 702 -------------------RTSPQQKLVIVESCQR-LGAIVAVTGDGVNDSPALKKADIG 741
Query: 884 IGISGVEGMQIVLSGHDM 901
+ + G+ G + DM
Sbjct: 742 VAM-GIAGSDAAKNAADM 758
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 410 EELGQVDTILSDKTGTLTCNQM 431
E LG I SDKTGTLT N+M
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRM 396
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 128/361 (35%), Gaps = 84/361 (23%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQNRES 469
E LG I S KTGTLT NQM + K ID + + S
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQM---------------------SVCKMFIIDKVDGDFCS 378
Query: 470 ANAKHKNSGSEIELETVITSNDGNDFKRRIKGFNFEDSRLMDGNWLKEPNVDTLLLFFRI 529
N + +GS E + ND + I+ F D L+ I
Sbjct: 379 LN-EFSITGSTYAPEGEVLKND-----KPIRSGQF----------------DGLVELATI 416
Query: 530 LAICHTAIPELNEETGNLTYEAESPDEAAFLVAAREFGFEFYRRTQSSVFIRERYPPKGQ 589
A+C+ + + NE G E+ + A + + F R S V ER
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNS 473
Query: 590 PVEREFKILNLLDFTSKRKRMSVIV------RDEDGQILLLCKGADSIIFDRLS----KN 639
+ + K L+F+ RK MSV R G + + KGA + DR +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGT 532
Query: 640 GRM-----YEEATTKLLNEYGEA--GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADR 692
R+ +E ++ E+G LR LALA +
Sbjct: 533 TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR------------------E 574
Query: 693 EATLEHVSDMME--KDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAIN 750
E L+ S ME DL VG + D +K V I AG+++ ++TGD TAI
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 751 I 751
I
Sbjct: 635 I 635
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 410 EELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVELAAAKQMAIDLEEQN 466
EE+ +D + SDKTGTLT N++ K V GV +V L AA MA +E Q+
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAA--MASRVENQD 372
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 31/164 (18%)
Query: 598 LNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRMYEEATTKLLNEYGEA 657
++ L F KR ++ D G + KGA I + L+K + ++++Y E
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 658 GLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHVSDMMEKDLILVGATAVED 717
GLR+LA+A + + E K K S GA E VG + D
Sbjct: 454 GLRSLAVARQVVPE-----------KTKESPGAPWE---------------FVGLLPLFD 487
Query: 718 KLQKGVPQCIDKLAQAGLKIWVLTGDKM----ETAINIGFACSL 757
+ + I + G+ + ++TGD++ ET +G ++
Sbjct: 488 PPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNM 531
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 583 RYPPKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRM 642
+Y P+ + V ++K+L F K++ +V G+ + KGA + + ++ +
Sbjct: 431 KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPI 490
Query: 643 YEEATTKLLN---EYGEAGLRTLALAYKQLDES 672
EE N E+ G R+L +A K+ + S
Sbjct: 491 PEEVDQAYKNKVAEFATRGFRSLGVARKRGEGS 523
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 26/123 (21%)
Query: 352 GLAHLVTALILYGYLIPI--SLYVSIEIVKFLQAIFINQDISMYDDESGIPAQARTS--- 406
G+ ++ L+++ LI S Y S IV+ L+ I++ G+PA T+
Sbjct: 292 GIGTILLILVIFTLLIVWVSSFYRSNPIVQILE---FTLAITIIGVPVGLPAVVTTTMAV 348
Query: 407 ---------------NLNEELGQVDTILSDKTGTLTCNQMDFLKCSVAGTAYGVSPSEVE 451
+ E L V+ + SDKTGTLT N++ T GV P ++
Sbjct: 349 GAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPY---TVAGVDPEDLM 405
Query: 452 LAA 454
L A
Sbjct: 406 LTA 408
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 703 MEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETA 748
M D V VED ++ P+ I +L Q+G++I +LTGD TA
Sbjct: 539 MAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 839 VICCRVSPKQKALVTRLVKEGTGKTTLA-IGDGANDVGMIQEADIGIGIS-----GVEGM 892
++ V P QK + VK+ K +A +GDG ND + +AD+GI + VE
Sbjct: 498 LVIAEVLPHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESG 554
Query: 893 QIVLSGHDMRKCI 905
IVL D+R +
Sbjct: 555 DIVLIRDDLRDVV 567
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 839 VICCRVSPKQKALVTRLVKEGTGKTTLA-IGDGANDVGMIQEADIGIGIS-----GVEGM 892
++ V P QK + VK+ K +A +GDG ND + +AD+GI + VE
Sbjct: 576 LVIAEVLPHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESG 632
Query: 893 QIVLSGHDMRKCI 905
IVL D+R +
Sbjct: 633 DIVLIRDDLRDVV 645
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 839 VICCRVSPKQKALVTRLVKEGTGKTTLA-IGDGANDVGMIQEADIGIGIS-----GVEGM 892
++ V P QK + VK+ K +A +GDG ND + +AD+GI + VE
Sbjct: 184 LVIAEVLPHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESG 240
Query: 893 QIVLSGHDMRKCI 905
IVL D+R +
Sbjct: 241 DIVLIRDDLRDVV 253
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 839 VICCRVSPKQKALVTRLVKEGTGKTTLA-IGDGANDVGMIQEADIGIGIS-----GVEGM 892
++ V P QK + VK+ K +A +GDG ND + +AD+GI + VE
Sbjct: 204 LVIAEVLPHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESG 260
Query: 893 QIVLSGHDMRKCI 905
IVL D+R +
Sbjct: 261 DIVLIRDDLRDVV 273
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 649 KLLNEYGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHVSDMMEKDLI 708
+L+ ++G A + LA ++L+ ++AK+++ R +E
Sbjct: 118 RLMEDFGVAVSNEVELALEKLE-----------REAKTAVIVARNGRVE----------- 155
Query: 709 LVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETA 748
G AV D L++ + +L + G+K+ ++TGD +A
Sbjct: 156 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 193
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 839 VICCRVSPKQKALVTRLVKEGTGKTTLA-IGDGANDVGMIQEADIGIGIS-----GVEGM 892
++ V P QK + VK+ K +A +GDG ND + +AD+GI + VE
Sbjct: 204 LVIAEVLPHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESG 260
Query: 893 QIVLSGHDMRKCI 905
IVL D+R +
Sbjct: 261 DIVLIRDDLRDVV 273
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 649 KLLNEYGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSIGADREATLEHVSDMMEKDLI 708
+L+ ++G A + LA ++L+ ++AK+++ R +E
Sbjct: 118 RLMEDFGVAVSNEVELALEKLE-----------REAKTAVIVARNGRVE----------- 155
Query: 709 LVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETA 748
G AV D L++ + +L + G+K+ ++TGD +A
Sbjct: 156 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 193
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ DKTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|2WTE|A Chain A, The Structure Of The Crispr-Associated Protein, Csa3, From
Sulfolobus Solfataricus At 1.8 Angstrom Resolution.
pdb|2WTE|B Chain B, The Structure Of The Crispr-Associated Protein, Csa3, From
Sulfolobus Solfataricus At 1.8 Angstrom Resolution
Length = 244
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 593 REFKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIF--DRLSKNGRMYEEATTKL 650
R L LL RKR +V VRDE G G+ I F + + R Y KL
Sbjct: 105 RXINTLILLGIIVSRKRFTVYVRDEGG-------GSRVISFNDNTIRALXRDYSREEXKL 157
Query: 651 LN---EYGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSSI----GADREATLEHV 699
LN E G+ LA K LD+SE + N + K I G DR+ L +
Sbjct: 158 LNVLYETKGTGITELA---KXLDKSEKTLINKIAELKKFGILTQKGKDRKVELNEL 210
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 586 PKGQPVEREFKILNLLDFTSKRKRMSVIVRDEDGQIL 622
PK + E + K+ + +D+ +K + +IVRDEDG IL
Sbjct: 144 PKDELKELKQKVTSKIDYGNKILELDLIVRDEDGNIL 180
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 842 CRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGIGIS-----GVEGMQIVL 896
V P +KA + V++ T +GDG ND + +AD+GI I VE IVL
Sbjct: 188 AEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAIGAGTDVAVETADIVL 245
Query: 897 SGHDMR 902
+D R
Sbjct: 246 VRNDPR 251
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 603 FTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSK---NGRMYE------EATTKLLNE 653
F +R+RMSV+V + L+CKGA I + S+ NG + ++ +
Sbjct: 64 FDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDT 123
Query: 654 YGEAGLRTLALAYKQLDESEYSAWNSEFQKAKSS 687
GLR +A+A K L E ++Q+A S
Sbjct: 124 LNRQGLRVVAVATKYLPARE-----GDYQRADES 152
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 842 CRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGIGIS-----GVEGMQIVL 896
V P +KA + V++ T +GDG ND + +AD+GI I VE IVL
Sbjct: 188 AEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAIGAGTDVAVETADIVL 245
Query: 897 SGHDMR 902
+D R
Sbjct: 246 VRNDPR 251
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 849 KALVTRLVKEGTGKT---TLAIGDGANDVGMIQEADIGIGISGVE 890
KAL ++ E G T +AIGDG ND+ MI+ A +G+ + +
Sbjct: 198 KALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQ 242
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 864 TLAIGDGANDVGMIQEADIGI 884
T+A+GDGAND+ M+ A +GI
Sbjct: 342 TVAVGDGANDIDMLAAAGLGI 362
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 839 VICCRVSPKQKALVTRLVKEGTGKTTLA-IGDGANDVGMIQEADIGIGISGVEGMQIVLS 897
++ V P QK + VK+ K +A +GDG ND + +AD+GI + + IVL
Sbjct: 63 LVIAEVLPHQK---SEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGD---IVLI 116
Query: 898 GHDMRKCI 905
D+R +
Sbjct: 117 RDDLRDVV 124
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 864 TLAIGDGANDVGMIQEADIGIGISG----VEGMQIVLSGHDMRKCIQ 906
T+A+GDGAND+ M ++A + I E I + D+R+ ++
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAKPILKEKADICIEKRDLREILK 208
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 864 TLAIGDGANDVGMIQEADIGIGISG----VEGMQIVLSGHDMRKCIQ 906
T+A+GDGAND+ M ++A + I E I + D+R+ ++
Sbjct: 162 TVAVGDGANDISMFKKAGLKIAFCAKPILKEKADICIEKRDLREILK 208
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLT 40
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 404 RTSNLNEELGQVDTILSDKTGTLT 427
+ SN+ E++ ++DTI+ +KTGTLT
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLT 40
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 864 TLAIGDGANDVGMIQEADIGIGIS 887
T++ GDG ND+ M++ A IG+ +
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAMG 229
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 864 TLAIGDGANDVGMIQEADIGIGIS 887
T++ GDG ND+ M++ A IG+ +
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAMG 229
>pdb|3FRP|A Chain A, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|F Chain F, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 627
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 783 VKDNILMQITNASQMIKLERDPHAAYALIIEGKTLAYALEDDMK 826
VK + L+Q+ A+ IKLE DP A L+ K + Y L D K
Sbjct: 528 VKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAV-YVLNDKYK 570
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,929,755
Number of Sequences: 62578
Number of extensions: 1058799
Number of successful extensions: 2405
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2325
Number of HSP's gapped (non-prelim): 87
length of query: 928
length of database: 14,973,337
effective HSP length: 108
effective length of query: 820
effective length of database: 8,214,913
effective search space: 6736228660
effective search space used: 6736228660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)