BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002392
(928 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 108/483 (22%), Positives = 183/483 (37%), Gaps = 120/483 (24%)
Query: 415 EELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRKGERTFEVDDSQ 474
E LG TI SDKTGTLT N M T+A + D+
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRM---------------------TVAHMWSDNQIHEADTT 378
Query: 475 TDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQKFFRVLAICHTAIPDVNE 534
+ G++ + + W+ R+ +C+ A+ N+
Sbjct: 379 ENQSGVSFDKTSA-----------------TWL---------ALSRIAGLCNRAVFQANQ 412
Query: 535 ETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKVNRVYELLHVLE 594
E I A + D S + EL S +++ Y + +
Sbjct: 413 ENLPILKRAVAGD----------------ASESALLKCIELCCGSVKEMRERYTKIVEIP 456
Query: 595 FTSSRKRMSVMVRNP---ENQLLLLCKGADSVMFERLSK---HG--QQFEAETRRHI-NR 645
F S+ K + +NP E + LL+ KGA + +R S HG Q + E + N
Sbjct: 457 FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNA 516
Query: 646 YAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGAT 705
Y E G + R LG + +++F + T D + +L +G
Sbjct: 517 YLELG----GLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPL--------DNLCFVGLI 564
Query: 706 AVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPD 765
++ D + VP+ + K AGIKV ++TGD TA I ++
Sbjct: 565 SMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII--------------- 609
Query: 766 MEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLDFALDKKLE 825
+G++ ++E + ++ +SQVN +++K V+ G L ++L+
Sbjct: 610 -----SEGNE------TVEDIAARLNIPVSQVNP-RDAK---ACVVHGSDLKDMTSEQLD 654
Query: 826 KMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGV--G 883
D+ ++ R+SP+QK ++ + G GDG ND ++ADIGV G
Sbjct: 655 ----DILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMG 710
Query: 884 ISG 886
I+G
Sbjct: 711 IAG 713
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 154/378 (40%), Gaps = 73/378 (19%)
Query: 520 RVLAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVS 579
R+ +C+ A+ N+E I A + D S + EL S
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGD----------------ASESALLKCIELCCGS 435
Query: 580 GQKVNRVYELLHVLEFTSSRKRMSVMVRNP---ENQLLLLCKGADSVMFERLSK---HG- 632
+++ Y + + F S+ K + +NP E + LL+ KGA + +R S HG
Sbjct: 436 VKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGK 495
Query: 633 -QQFEAETRRHI-NRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVAS 690
Q + E + N Y E G + R LG + +++F + T D +
Sbjct: 496 EQPLDEELKDAFQNAYLELG----GLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPL-- 549
Query: 691 AAEKIERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLL 750
+L +G ++ D + VP+ + K AGIKV ++TGD TA I ++
Sbjct: 550 ------DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 603
Query: 751 RQEMKQIVITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLV 810
+G++ ++E + ++ +SQVN +++K V
Sbjct: 604 --------------------SEGNE------TVEDIAARLNIPVSQVNP-RDAK---ACV 633
Query: 811 IDGKSLDFALDKKLEKMFLDLAIDCASVICCRSSPKQKALVTRLVKGTGKTTLAIGDGAN 870
+ G L ++L+ D+ ++ R+SP+QK ++ + G GDG N
Sbjct: 634 VHGSDLKDMTSEQLD----DILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVN 689
Query: 871 DVGMLQEADIGV--GISG 886
D ++ADIGV GI+G
Sbjct: 690 DSPASKKADIGVAMGIAG 707
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 698 DLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINIGYACSLLRQEMKQI 757
DL +G A+ D + VP+ + K AGIKV ++TGD TA I ++
Sbjct: 587 DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII------- 639
Query: 758 VITLDSPDMEALEKQGDKENITKVSLESVTKQIREGISQVNSAKESKVTFGLVIDGKSLD 817
+G++ ++E + ++ I QVN +++K V+ G L
Sbjct: 640 -------------SEGNE------TIEDIAARLNIPIGQVNP-RDAK---ACVVHGSDL- 675
Query: 818 FALDKKLEKMFLDLAIDCAS-VICCRSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQ 876
K L LD + + ++ R+SP+QK ++ + G GDG ND L+
Sbjct: 676 ----KDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALK 731
Query: 877 EADIGV--GISG 886
+ADIGV GISG
Sbjct: 732 KADIGVAMGISG 743
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 415 EELGQVDTILSDKTGTLTCNSM 436
E LG TI SDKTGTLT N M
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM 391
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 51/290 (17%)
Query: 607 RNPENQLLLLCKGADSVMFERLSK---HGQQFEAETRRHINRYAEAGLRTLVIAYRELGE 663
R+P + L++ KGA + ER S GQ+ + + + A L + R LG
Sbjct: 509 RDPRHVLVM--KGAPERVLERCSSILIKGQELPLDEQWR-EAFQTAYLSLGGLGERVLGF 565
Query: 664 DEYRIWEKEFLKAKTSVTSDREALVASAAEKIERDLILLGATAVEDKLQKGVPECIDKLA 723
+ + EK++ D EA+ + L G ++ D + VP+ + K
Sbjct: 566 CQLYLSEKDY---PPGYAFDVEAMNFPTS-----GLSFAGLVSMIDPPRATVPDAVLKCR 617
Query: 724 QAGIKVWVLTGDKMETAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITKVSL 783
AGI+V ++TGD TA I + ++ + + ++
Sbjct: 618 TAGIRVIMVTGDHPITAKAIAASVGIISEGSE--------------------------TV 651
Query: 784 ESVTKQIREGISQVNSAKESKVTFGLVIDGKSL-DFALDKKLEKMFLDLAIDCASVICCR 842
E + ++R + QVN K+++ VI+G L D + +E + ++ R
Sbjct: 652 EDIAARLRVPVDQVNR-KDAR---ACVINGMQLKDMDPSELVEALRTH-----PEMVFAR 702
Query: 843 SSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQA 892
+SP+QK ++ + G GDG ND L++ADIGV + G+ G A
Sbjct: 703 TSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAM-GIAGSDA 751
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 135/349 (38%), Gaps = 52/349 (14%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I SDKTGTLT N M K M ++R
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK-----------MFIIDRIDGDLC 377
Query: 464 GERTFEVDDSQTDAPGLNGNIVESGKSVKGFNFRDERIMNGQWVNEPHSDVIQKFFRVLA 523
F V S T AP G ++++ K V+ +GQ+ D + + + A
Sbjct: 378 LLNEFSVTGS-TYAP--EGEVLKNDKPVR----------SGQY------DGLVELATICA 418
Query: 524 ICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQKV 583
+C+ + D NE G E+ + A + + F + ++S E +
Sbjct: 419 LCNDSSLDFNETKGIYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNSVI 475
Query: 584 NRVYELLHVLEFTSSRKRMSVMVRNPENQLL----LLCKGADSVMFERLS--KHGQQFEA 637
++ + LEF+ RK MSV +++ + KGA + +R + + G
Sbjct: 476 RQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGT---- 531
Query: 638 ETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKI-- 695
TR + + + + VI G D R A RE +V + K
Sbjct: 532 -TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSTKFME 585
Query: 696 -ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINI 743
E DL +G + D +K V I AGI+V ++TGD TAI I
Sbjct: 586 YETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 840 CC--RSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGI 884
CC R P K+ + ++ + T GDG ND L++A+IG+ +
Sbjct: 673 CCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAM 719
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 133/352 (37%), Gaps = 57/352 (16%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I SDKTGTLT N M K
Sbjct: 330 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK----------------------- 366
Query: 464 GERTFEVDDSQTDAPGLNG-NIVESGKSVKGFNFRDER-IMNGQWVNEPHSDVIQKFFRV 521
F +D D LN +I S + +G ++++ I +GQ+ D + + +
Sbjct: 367 ---MFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATI 417
Query: 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581
A+C+ + D NE G E+ + A + + F + ++S E
Sbjct: 418 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNS 474
Query: 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLL-----LLCKGADSVMFERLS--KHGQQ 634
+ ++ + LEF+ RK MSV ++ + KGA + +R + + G
Sbjct: 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT- 533
Query: 635 FEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEK 694
TR + + + + VI G D R A RE +V + +
Sbjct: 534 ----TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSSR 584
Query: 695 I---ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINI 743
E DL +G + D +K V I AGI+V ++TGD TAI I
Sbjct: 585 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 636
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 840 CC--RSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGI 884
CC R P K+ + ++ + T GDG ND L++A+IG+ +
Sbjct: 675 CCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM 721
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 133/352 (37%), Gaps = 57/352 (16%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I SDKTGTLT N M K
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCK----------------------- 365
Query: 464 GERTFEVDDSQTDAPGLNG-NIVESGKSVKGFNFRDER-IMNGQWVNEPHSDVIQKFFRV 521
F +D D LN +I S + +G ++++ I +GQ+ D + + +
Sbjct: 366 ---MFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATI 416
Query: 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581
A+C+ + D NE G E+ + A + + F + ++S E
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNS 473
Query: 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLL-----LLCKGADSVMFERLS--KHGQQ 634
+ ++ + LEF+ RK MSV ++ + KGA + +R + + G
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT- 532
Query: 635 FEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEK 694
TR + + + + VI G D R A RE +V + +
Sbjct: 533 ----TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSSR 583
Query: 695 I---ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINI 743
E DL +G + D +K V I AGI+V ++TGD TAI I
Sbjct: 584 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 840 CC--RSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGI 884
CC R P K+ + ++ + T GDG ND L++A+IG+ +
Sbjct: 674 CCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM 720
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 132/352 (37%), Gaps = 57/352 (16%)
Query: 404 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSVAGVAYGRVMTEVERTLAKRK 463
K A R+ E LG I S KTGTLT N M K
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCK----------------------- 365
Query: 464 GERTFEVDDSQTDAPGLNG-NIVESGKSVKGFNFRDER-IMNGQWVNEPHSDVIQKFFRV 521
F +D D LN +I S + +G ++++ I +GQ+ D + + +
Sbjct: 366 ---MFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATI 416
Query: 522 LAICHTAIPDVNEETGEISYEAESPDEAAFVIAAREVGFQFFGSSQTSISLHELDPVSGQ 581
A+C+ + D NE G E+ + A + + F + ++S E
Sbjct: 417 CALCNDSSLDFNETKGVYEKVGEATETALTTLVEK---MNVFNTEVRNLSKVERANACNS 473
Query: 582 KVNRVYELLHVLEFTSSRKRMSVMVRNPENQLL-----LLCKGADSVMFERLS--KHGQQ 634
+ ++ + LEF+ RK MSV ++ + KGA + +R + + G
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT- 532
Query: 635 FEAETRRHINRYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEK 694
TR + + + + VI G D R A RE +V + +
Sbjct: 533 ----TRVPMTGPVKEKILS-VIKEWGTGRDTLRC----LALATRDTPPKREEMVLDDSSR 583
Query: 695 I---ERDLILLGATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETAINI 743
E DL +G + D +K V I AGI+V ++TGD TAI I
Sbjct: 584 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 840 CC--RSSPKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGI 884
CC R P K+ + ++ + T GDG ND L++A+IG+ +
Sbjct: 674 CCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM 720
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 707 VEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETA 740
VED ++ PE I +L Q+GI++ +LTGD TA
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 409 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFVKCSVAGVAYGRVMTEVER-------- 457
+ SN+ E++ ++DTI+ DKTGTLT + +F+ S++ +AY + +
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQFIGDSLS-LAYAASVEALSSHPIAKAIV 75
Query: 458 TLAKRKGERTFEVDD-SQTDAPGLNGNI 484
AK +G + EV D + G+ G I
Sbjct: 76 KYAKEQGVKILEVKDFKEISGIGVRGKI 103
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 645 RYAEAGLRTLVIAYRELGEDEYRIWEKEFLKAKTSVTSDREALVASAAEKIER-DLILLG 703
RY +AGL +V+A +E G R W AK +A++A + E+I R +L+ +G
Sbjct: 757 RYQQAGLPLIVLAGKEYGAGSSRDW-----AAKGPFLLGIKAVLAESYERIHRSNLVGMG 811
Query: 704 ATAVE 708
+E
Sbjct: 812 VIPLE 816
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 590 LHVLEFTSSRKRMSVMVRNPENQLLLLCKGADSVMFERLSKHGQQFEAETRRHINRYAEA 649
+H L F KR ++ + + KGA + E L+K + I++YAE
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 650 GLRTLVIAYRELGE 663
GLR+L +A + + E
Sbjct: 454 GLRSLAVARQVVPE 467
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 415 EELGQVDTILSDKTGTLTCNSM 436
EE+ +D + SDKTGTLT N +
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKL 339
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 839 ICCRSSPKQKALVTRLVKGTG---KTTLAIGDGANDVGMLQEADIGVGISGV-EGMQAVM 894
+ + KQK + +++ G + T++ GDG ND+ ML+ A IGV + E ++A
Sbjct: 181 VTAKGDTKQKG-IDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA-- 237
Query: 895 SSDYAIA 901
++DY A
Sbjct: 238 AADYVTA 244
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 839 ICCRSSPKQKALVTRLVKGTG---KTTLAIGDGANDVGMLQEADIGVGISGV-EGMQAVM 894
+ + KQK + +++ G + T++ GDG ND+ ML+ A IGV + E ++A
Sbjct: 181 VTAKGDTKQKG-IDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKA-- 237
Query: 895 SSDYAIA 901
++DY A
Sbjct: 238 AADYVTA 244
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 409 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFVKCSVAGVAYGRVMTEVER-------- 457
+ SN+ E++ ++DTI+ +KTGTLT + +F+ S++ +AY + +
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLTYGTPIVTQFIGDSLS-LAYAASVEALSSHPIAKAIV 75
Query: 458 TLAKRKGERTFEVDD-SQTDAPGLNGNIVESGKSVK 492
AK +G + EV D + G+ G I + VK
Sbjct: 76 KYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEVK 111
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 862 TLAIGDGANDVGMLQEADIGV 882
T+A+GDGAND+ ML A +G+
Sbjct: 342 TVAVGDGANDIDMLAAAGLGI 362
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 409 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFVKCSVAGVAYGRVMTEVER-------- 457
+ SN+ E++ ++DTI+ +KTGTLT + +F+ S++ +AY + +
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLS-LAYAASVEALSSHPIAKAIV 75
Query: 458 TLAKRKGERTFEVDD-SQTDAPGLNGNI 484
AK +G + EV D + G+ G I
Sbjct: 76 KYAKEQGVKILEVKDFKEISGIGVRGKI 103
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 845 PKQKALVTRLVKGTGKTTLAIGDGANDVGMLQEADIGVGISG 886
P+ K V +++ G GDG ND L++AD G+ + G
Sbjct: 612 PQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEG 653
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 347 FYDPRRAPLAAFLHFLTGLMLYGYLIPISLYISIEIVKVLQSVFINHDRDMYYEDTDKPA 406
FY R P+ L F + + G +P+ L + + + ++ K A
Sbjct: 313 FY--RSNPIVQILEFTLAITIIG--VPVGLPAVVTTTMAVGAAYL----------AKKKA 358
Query: 407 RARTSNLNEELGQVDTILSDKTGTLTCNSMEFV-KCSVAGV 446
+ + E L V+ + SDKTGTLT N + +VAGV
Sbjct: 359 IVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGV 399
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 862 TLAIGDGANDVGMLQEADIGVG 883
T+A+GDGAND+ M+ A +GV
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVA 285
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 863 LAIGDGANDVGMLQEADIGVGISGV-EGMQAV 893
+A GDG ND+ ML+ A IGV + E +Q+V
Sbjct: 214 MACGDGGNDIPMLKAAGIGVAMGNASEKVQSV 245
>pdb|1VQ0|A Chain A, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VQ0|B Chain B, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
Length = 302
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 737 METAINIGYACSLLRQEMKQIVITLDSPDMEALEKQGDKENITK 780
+ETA I Y C R++ K ++ LD ++E + K+G E + K
Sbjct: 234 VETA-EIKYKCDCNREKAKNALLVLDKKELEDMRKEGKGEVVCK 276
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 703 GATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETA 740
G AV D L++ + +L + GIKV ++TGD +A
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 487
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 703 GATAVEDKLQKGVPECIDKLAQAGIKVWVLTGDKMETA 740
G AV D L++ + +L + GIKV ++TGD +A
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSA 565
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,770,450
Number of Sequences: 62578
Number of extensions: 1047004
Number of successful extensions: 2826
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2744
Number of HSP's gapped (non-prelim): 82
length of query: 928
length of database: 14,973,337
effective HSP length: 108
effective length of query: 820
effective length of database: 8,214,913
effective search space: 6736228660
effective search space used: 6736228660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)