Query 002393
Match_columns 928
No_of_seqs 256 out of 845
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 00:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 2E-127 6E-132 1107.1 37.9 491 57-642 8-505 (505)
2 3k9o_A Ubiquitin-conjugating e 14.3 4E+02 0.014 26.7 7.7 105 513-641 88-200 (201)
3 3e46_A Ubiquitin-conjugating e 8.6 6.8E+02 0.023 26.2 7.4 100 521-641 145-252 (253)
4 1t6u_A Superoxide dismutase [N 8.3 1.6E+02 0.0053 27.9 2.0 11 911-921 33-43 (117)
5 2e4h_B Tubulin alpha-ubiquitou 6.2 2.9E+02 0.01 20.6 2.2 17 881-897 7-23 (36)
6 4fid_A G protein alpha subunit 5.9 8.3E+02 0.029 26.5 6.7 83 527-635 46-141 (340)
7 1dp7_P MHC class II transcript 5.8 1.9E+02 0.0065 25.2 1.2 22 832-853 17-38 (76)
8 3r45_C Holliday junction recog 5.3 3.2E+02 0.011 23.9 2.2 19 355-373 26-44 (81)
9 1nyc_A Staphostatin B, cystein 5.3 1.6E+02 0.0055 26.4 0.4 16 630-645 20-35 (111)
10 3hhl_A RPA0582; alpha-beta-bar 5.2 5.3E+02 0.018 24.7 4.0 29 353-384 7-35 (143)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-127 Score=1107.11 Aligned_cols=491 Identities=27% Similarity=0.445 Sum_probs=378.5
Q ss_pred EEEeCCEEEEEecCCCCcceEEEEEeCCCCCCCccccCCcccCHHHHHHHHHhhhcCCccCCCccceeEEEEEEEEEEEc
Q 002393 57 LYETRARFYLIGSDRNKRFFRVLKIDRSEPSDLNISEDPVVYSPQEIKNLLQRISEGNRATGGLTFVAKVFGIAGCIKFL 136 (928)
Q Consensus 57 LyeT~~rfyiv~s~~~~~~~rvLkIDR~~~~~L~i~Ed~~~ys~~e~~~lL~~i~egn~~~ggl~~v~~~yGIlG~Ir~l 136 (928)
.-+||++|||+|.+.....-.+|.|||.++ ++.+.+... ++ .. ..+++|+||||+|+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~i~r~~~-~~~~~~~~~-------------~~-----~~--~~~~~i~GilG~i~l~ 66 (505)
T 3lwt_X 8 YVQNADGIFFKLAEGKGTNDAVIHLANQDQ-GVRVLGAEE-------------FP-----VQ--GEVVKIASLMGFIKLK 66 (505)
T ss_dssp EEEETTEEEEEESSCCSSCCCEEEEETTTC-CEEEECGGG-------------SC-----SS--SCCEEESEEEEEEEET
T ss_pred EEECCCEEEEEECCCCCCCcceEEEEcCCC-eEEeccccc-------------CC-----Cc--CceeEEEEEEEEEEEC
Confidence 346999999999874211225999999987 455543110 11 11 1377999999999999
Q ss_pred CceEEEEEeceeEeeeecCceEEEEeeeeeEecCCCCcCcccccchhHHHHHHHhhccCCCCceEEecccCccchhhhhh
Q 002393 137 ESYYLILVTKRRQIGCICGHAIYSIDESQLITIPHVSIQSDVAHSKTELRYKKLLSSVDLTKDFYYSYTYPIMQSLQKNV 216 (928)
Q Consensus 137 ~~~YLlVIT~r~~VG~I~Gh~IY~I~~t~~Ipi~~~~~~~~~~~skdE~ry~kLL~~vdlt~~FYFSytYDLT~SlQ~n~ 216 (928)
+++||+|||++++||.|+||.||+|++++|||++.+. ..+++|.+|+++|+.++++++|||||+||||+++|++.
T Consensus 67 ~~~YlivIT~~~~vg~i~gh~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~~ 141 (505)
T 3lwt_X 67 LNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNE 141 (505)
T ss_dssp TEEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHHH
T ss_pred CCcEEEEEEccEEEEEECCeEEEEEEEEEEEEecCcc-----ccChhHHHHHHHHHHHhcCCCEEEeCCcCCCcchhhcc
Confidence 9999999999999999999999999999999998542 35689999999999999999999999999999999987
Q ss_pred hccc-cCCCCcccccccchhccHHHHhcc----CCCceEEEeeeeEEEeEEEEEeeceeEEEEEEeeccccccccccccc
Q 002393 217 LSMA-EEGMPYENIFVWNAYLTQPIRLRC----KNTIWTIALVHGHFKQIRLSIFGRDFSVSLISRRSRHFAGTRYLKRG 291 (928)
Q Consensus 217 ~~~~-~~~~~yd~rFvWN~~Ll~~~r~~l----~~~~w~vpLIqGfv~q~~~~i~g~~~~ltLISRRS~~rAGTRY~~RG 291 (928)
.... ..+..+|++|+||++|+++|++.. +...|++|||||||++..+.++|+.+.+|||||||++||||||++||
T Consensus 142 ~~~~~~~~~~~d~~F~WN~~l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RG 221 (505)
T 3lwt_X 142 KVGPAASWKTADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRG 221 (505)
T ss_dssp HHCSCCCGGGSCTTTCTTTGGGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSS
T ss_pred ccCccccccCCCCceechHHHHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccC
Confidence 6433 345568999999999999998642 23589999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeeeEEEEccccCCCCCcEEEEEEEecCcceeeEecCCCCCCccceEecCCCccHHHHHHHHHHHHHhhC
Q 002393 292 VNDRGRVANDVETEQVVLDEEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYG 371 (928)
Q Consensus 292 IDddG~VANfVETEQIV~~~~~~~~~~~isSfVQiRGSIPLfWsQ~~~~l~~KP~I~l~~~d~~~~A~~kHF~~L~~rYG 371 (928)
||++|+|||||||||||+.+...+.+..++||||+||||||||+|.+ .+.+||+|.+. +++++||++||++|.++||
T Consensus 222 idd~G~VANfVETEqIv~~~~~~~~~~~~~SfvQiRGSVPlfW~Q~~-~l~~kP~i~i~--~~~~~a~~kHF~~L~~~YG 298 (505)
T 3lwt_X 222 VDKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEIN-NLKYKPNLVLG--ENSLDATKKHFDQQKELYG 298 (505)
T ss_dssp BCTTSCCSCEEEEEEEEEEECTTTCCEEEEEEEEEEECCCSBSCCCC-CSSSCCCCCCC--HHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCccceeeEEEEEEeCCCCCCCccEEEEEEeccccCceeeecC-CcCcCCCeeec--CchHHHHHHHHHHHHHHhC
Confidence 99999999999999999987543333479999999999999999975 57899999886 4599999999999999999
Q ss_pred CcEEEEecccCccCCchhhHHHHHHHHHHHHhhhcCCcCCCeEEEecccchhhhc-ccchHHHHHHHHHHHHhcccccee
Q 002393 372 NPIIVLNLIKTVEKRPREMMLRREFANAVGYLNTILSEENQVRFIHWDFHKFAKS-KSANVLAVLGGVASEALDLTGFYY 450 (928)
Q Consensus 372 ~pIiiVNLLk~~Ekk~~E~~L~~~F~~aV~~ln~~lp~e~~I~Yi~FDfHk~~K~-k~~nvl~~L~~va~~~l~~~gff~ 450 (928)
. ++|||||++ |++|..|+++|+++|+++|+ ++|+|++||||++||+ +..++..++..+++..++..|||+
T Consensus 299 ~-~~iVNLl~~---k~~E~~L~~~y~~~v~~l~~-----~~i~y~~fDfh~~~k~~~~~~v~~ll~~l~~~~~~~~g~f~ 369 (505)
T 3lwt_X 299 D-NYLVNLVNQ---KGHELPVKEGYESVVHALND-----PKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFH 369 (505)
T ss_dssp E-EEEEEECCC---SSCCCHHHHHHHHHHHHHCC-----TTEEEEEECCCSSTTTHHHHHHHHHHHHHHHHTCCTTCSEE
T ss_pred C-cEEEecccC---CCchhHHHHHHHHHHHHhcc-----cCCceEEecchHhhhccchhHHHHHHHHHHHhcccccCceE
Confidence 8 568999986 56899999999999999984 5799999999999998 445666777888877788899997
Q ss_pred eCCCcccccccchhhhcccccCCccccccCCCCCCCCCCcccccccccccCCCCCCCCCcceeceEEeeccCccchhhhH
Q 002393 451 SGKSCITKKRTSQLRDLRASSGDLARVGSCNESLNSVGSRERDADFYQQSKTNSPDGAAPCFQSGVLRTNCIDCLDRTNV 530 (928)
Q Consensus 451 ~~~~~~~~~~~~~l~~~r~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~Q~GV~RTNCiDCLDRTNV 530 (928)
...... + ..++++..|+||||||||||||||||
T Consensus 370 ~~~~~~----------------------------------------------g-~~~~~~~~Q~GV~RtNCiDCLDRTNv 402 (505)
T 3lwt_X 370 KVIDSN----------------------------------------------G-NTVEIVNEQHSVVRTNCMDCLDRTNV 402 (505)
T ss_dssp EEECTT----------------------------------------------S-CEEEEEECCCEEEEEETTSCHHHHHH
T ss_pred eeccCC----------------------------------------------C-CccceeeccceEEEEecccccccchH
Confidence 642110 0 01246789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCC-CCCCchHHHHHHHHHHHHhhHHHHHhcCCccccccccccccccccccccCccccc
Q 002393 531 AQYAYGLAALGRQLHAMGLTDMPK-VNPNSSIAAALMDMYQSMGDALAQQYGGSAAHNTLRRVSYECQVFPERQGKWKAT 609 (928)
Q Consensus 531 ~Q~~ig~~aL~~QL~~LGi~~~~~-i~~ds~~~~~l~~lwadnGD~IS~QYaGT~Alktl~~~~~~~~~F~~R~Gk~~~~ 609 (928)
||+++|+.+|++||++||+...+. ++.++++...|++||++|||+||+|||||+|+|+ +|+ |+|||+.+
T Consensus 403 vQ~~i~~~~L~~qL~~lgi~~~~~~~~~~~~~~~~f~~lWadnGD~iS~qYaGT~Alkt---------~~t-R~gk~~~~ 472 (505)
T 3lwt_X 403 VQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKT---------DFT-RTGKRTRL 472 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTCCGGGCHHHHHHHHHHHHHHHHHHTTTCCCCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccCHHHHHHHHHHHHHhhHHHHHHhcCCccccC---------cee-eceeechh
Confidence 999999999999999999987654 4567889999999999999999999999999999 996 99999999
Q ss_pred cchhHHHHHHHHHhhcccCchhhhhHHHhhhcc
Q 002393 610 TQSREFLKSIKRYYSNAYTDGEKQDAINLFLGY 642 (928)
Q Consensus 610 ~~s~D~~~Sl~RYY~NnF~D~~KQdaInLfLG~ 642 (928)
|+++|+++|++|||+|||.|+.||+|||||||+
T Consensus 473 g~l~D~~~S~~Ryy~NnF~D~~rQ~aidl~LGn 505 (505)
T 3lwt_X 473 GAFNDFLNSASRYYQNNWTDGPRQDSYDLFLGG 505 (505)
T ss_dssp ---------------------------------
T ss_pred hhHHHHHHhHhheeecccCcHHHHHHHHHHcCC
Confidence 999999999999999999999999999999996
No 2
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=14.31 E-value=4e+02 Score=26.72 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=59.7
Q ss_pred eceEEeeccCccchh-----hhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHH---HHHHHHhhHHHHHhcCCc
Q 002393 513 QSGVLRTNCIDCLDR-----TNVAQYAYGLAALGRQLHAMGLTDMPKVNPNSSIAAALM---DMYQSMGDALAQQYGGSA 584 (928)
Q Consensus 513 Q~GV~RTNCiDCLDR-----TNV~Q~~ig~~aL~~QL~~LGi~~~~~i~~ds~~~~~l~---~lwadnGD~IS~QYaGT~ 584 (928)
++|.+ |+|-|.. .++-+-+++...| |. ...++-..+..++..++ +.|....-.....|++..
T Consensus 88 ~~G~i---Cl~iL~~~W~p~~~i~~vL~~i~~l---l~----~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~ 157 (201)
T 3k9o_A 88 VTGAI---CLDILKDQWAAAMTLRTVLLSLQAL---LA----AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 157 (201)
T ss_dssp TTCBB---CCGGGTTTCCTTCCHHHHHHHHHHH---HH----SCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCee---eCcccccCCCCCCCHHHHHHHHHHH---hc----CCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccc
Confidence 45543 8888742 2455544444333 21 12233344555655554 467777777889999987
Q ss_pred cccccccccccccccccccCccccccchhHHHHHHHHHhhcccCchhhhhHHHhhhc
Q 002393 585 AHNTLRRVSYECQVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLG 641 (928)
Q Consensus 585 Alktl~~~~~~~~~F~~R~Gk~~~~~~s~D~~~Sl~RYY~NnF~D~~KQdaInLfLG 641 (928)
+... .|-.+..+...+|.-++-...+-+.. +++-..|++.+|+
T Consensus 158 ~~~~---------~~eekV~~l~~MGf~~~~a~~AL~~~-----~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSP---------EYTKKIENLCAMGFDRNAVIVALSSK-----SWDVETATELLLS 200 (201)
T ss_dssp CCCH---------HHHHHHHHHHTTTCCHHHHHHHHHHT-----TTCHHHHHHHHHH
T ss_pred cccc---------hhHHHHHHHHHcCCCHHHHHHHHHHc-----CCCHHHHHHHHhc
Confidence 6544 33334455555666666666555544 3355667777765
No 3
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=8.58 E-value=6.8e+02 Score=26.21 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=54.4
Q ss_pred cCccchh-----hhHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHH---HHHHHHhhHHHHHhcCCccccccccc
Q 002393 521 CIDCLDR-----TNVAQYAYGLAALGRQLHAMGLTDMPKVNPNSSIAAALM---DMYQSMGDALAQQYGGSAAHNTLRRV 592 (928)
Q Consensus 521 CiDCLDR-----TNV~Q~~ig~~aL~~QL~~LGi~~~~~i~~ds~~~~~l~---~lwadnGD~IS~QYaGT~Alktl~~~ 592 (928)
|+|-|.. .++-+-+++...| |. ...++-..+..++..++ +.|....-.....|++......
T Consensus 145 CL~iL~~~WsP~~ti~~vL~sI~~l---l~----~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~---- 213 (253)
T 3e46_A 145 CLDILKDQWAAAMTLRTVLLSLQAL---LA----AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP---- 213 (253)
T ss_dssp CCGGGTTCCCTTCCHHHHHHHHHHH---HH----SCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCH----
T ss_pred ecccccCCCCCCCCHHHHHHHHHHH---hc----CCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcc----
Confidence 8887742 3455544444333 21 12233334555555554 4666777777889999866544
Q ss_pred cccccccccccCccccccchhHHHHHHHHHhhcccCchhhhhHHHhhhc
Q 002393 593 SYECQVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLG 641 (928)
Q Consensus 593 ~~~~~~F~~R~Gk~~~~~~s~D~~~Sl~RYY~NnF~D~~KQdaInLfLG 641 (928)
.|..+..+...+|.-++....+-+.. +.+...|++.+||
T Consensus 214 -----~~~~~v~~l~~mgf~~~~~~~al~~~-----nWd~~~A~e~L~~ 252 (253)
T 3e46_A 214 -----EYTKKIENLCAAGFDRNAVIVALSSK-----SWDVETATELLLS 252 (253)
T ss_dssp -----HHHHHHHHHHHTTCCHHHHHHHHHHT-----TTCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHcCCCHHHHHHHHHHc-----CCCHHHHHHHHhc
Confidence 33333344444555555444433322 5567778887776
No 4
>1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A
Probab=8.31 E-value=1.6e+02 Score=27.90 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=9.0
Q ss_pred CcccccceecC
Q 002393 911 DPSQLSRWMIG 921 (928)
Q Consensus 911 ~~~~~~~~~~~ 921 (928)
||-+++||+.-
T Consensus 33 d~nq~~R~i~~ 43 (117)
T 1t6u_A 33 DPHFQTRATVI 43 (117)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77999999863
No 5
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens}
Probab=6.20 E-value=2.9e+02 Score=20.58 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhccc
Q 002393 881 EAEMAAALSEYEQIGAN 897 (928)
Q Consensus 881 ~~~~~~~~~~~~~~~~~ 897 (928)
+.-|++-.++|+++|.+
T Consensus 7 ~edl~~L~~dYee~~~~ 23 (36)
T 2e4h_B 7 REDMAALEKDYEEVGVD 23 (36)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44589999999999876
No 6
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=5.87 E-value=8.3e+02 Score=26.52 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCC-C------------CCCCCchHHHHHHHHHHHHhhHHHHHhcCCcccccccccc
Q 002393 527 RTNVAQYAYGLAALGRQLHAMGLTDM-P------------KVNPNSSIAAALMDMYQSMGDALAQQYGGSAAHNTLRRVS 593 (928)
Q Consensus 527 RTNV~Q~~ig~~aL~~QL~~LGi~~~-~------------~i~~ds~~~~~l~~lwadnGD~IS~QYaGT~Alktl~~~~ 593 (928)
+.|++|++- +|-..+..|++--. + .......++..++.||.|-|=. ..|.
T Consensus 46 ~~N~~~~~~---~li~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq--~~~~------------ 108 (340)
T 4fid_A 46 CSNVVTCMR---TLIEQSAILNHPMKYQPKSKEFTTEDPVTLPFSPELVGDVEALWADEGIQ--ATYE------------ 108 (340)
T ss_dssp HHHHHHHHH---HHHHHHHHTTCCCSCCCCSGGGSCCSCCCSSCCTTHHHHHHHHHHSHHHH--HHHH------------
T ss_pred HHhHHHHHH---HHHHHHHHhCCCCCChhhHHHHhhcccCCCCCCHHHHHHHHHHHcCHHHH--HHHH------------
Confidence 358888664 45555666765321 1 1123456888999999987622 2221
Q ss_pred ccccccccccCccccccchhHHHHHHHHHhhcccCchhhhhH
Q 002393 594 YECQVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDA 635 (928)
Q Consensus 594 ~~~~~F~~R~Gk~~~~~~s~D~~~Sl~RYY~NnF~D~~KQda 635 (928)
|+....+.....=++..+.|++.+.|.... ||.
T Consensus 109 --------r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~-~Di 141 (340)
T 4fid_A 109 --------ESAKFQLPDCAKYLFENVKRIAMEDYVPTE-EDL 141 (340)
T ss_dssp --------TCTTSCCCTTHHHHHHTHHHHSSTTCCCCH-HHH
T ss_pred --------hcccccccchhhhHHHHHHHHhcccCCccc-cce
Confidence 222222233335678889999999997654 443
No 7
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=5.80 E-value=1.9e+02 Score=25.19 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.4
Q ss_pred CcchHHHHHHHHhccCCCCCCC
Q 002393 832 DENSEIYKHYAELCQGPAMEPF 853 (928)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~ 853 (928)
+.-++.|.||.+.|+-..|.|.
T Consensus 17 vpR~~vY~~Y~~~C~~~~~~pl 38 (76)
T 1dp7_P 17 LPRSTLYNHYLLHSQEQKLEPV 38 (76)
T ss_dssp EEHHHHHHHHHHHHHHTTCCCC
T ss_pred echHHHHHHHHHHHHhcCCccC
Confidence 4467999999999998888874
No 8
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=5.31 E-value=3.2e+02 Score=23.85 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHhhCCc
Q 002393 355 TYQATKMHFEDLAKRYGNP 373 (928)
Q Consensus 355 ~~~A~~kHF~~L~~rYG~p 373 (928)
+-.-|++|+..|+++|+.|
T Consensus 26 sr~RFQ~~Mq~lieKYn~P 44 (81)
T 3r45_C 26 SRRRFQRRMQRLIEKYNQP 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999876
No 9
>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP: b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
Probab=5.31 E-value=1.6e+02 Score=26.45 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=13.4
Q ss_pred hhhhhHHHhhhccccC
Q 002393 630 GEKQDAINLFLGYFQP 645 (928)
Q Consensus 630 ~~KQdaInLfLG~~~p 645 (928)
..+|+.|+||.|++..
T Consensus 20 ~~~q~~i~lfignw~n 35 (111)
T 1nyc_A 20 HLEQTNINLFIGNWSN 35 (111)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred ecccceEEEEEeccCC
Confidence 3589999999999853
No 10
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=5.20 E-value=5.3e+02 Score=24.69 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=18.0
Q ss_pred CccHHHHHHHHHHHHHhhCCcEEEEecccCcc
Q 002393 353 DPTYQATKMHFEDLAKRYGNPIIVLNLIKTVE 384 (928)
Q Consensus 353 d~~~~A~~kHF~~L~~rYG~pIiiVNLLk~~E 384 (928)
+|+.++++. |.. .--+.||+.||||+=++
T Consensus 7 ~p~~~~~~~-~~~--~~~~~pv~MlNLlrf~~ 35 (143)
T 3hhl_A 7 DPTKEVFAQ-FRA--NDREGPIHMLNLVRLRP 35 (143)
T ss_dssp SCCHHHHHH-HHH--CCCSSCEEEEEEEEECS
T ss_pred CCCHHHHHH-HHh--CCCCCCEEEEehhcccc
Confidence 455555444 221 23456999999998654
Done!