Query 002393
Match_columns 928
No_of_seqs 256 out of 845
Neff 5.3
Searched_HMMs 13730
Date Tue Mar 26 00:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002393.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002393hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1va4a_ c.69.1.12 (A:) Arylest 17.4 44 0.0032 29.8 3.9 57 321-382 1-57 (271)
2 d1t6ua_ a.24.22.1 (A:) Nickel- 12.7 41 0.003 29.5 2.0 12 910-921 32-43 (117)
3 d2bcjq1 a.66.1.1 (Q:67-183) Tr 11.4 1.5E+02 0.011 25.0 5.5 43 528-573 15-74 (117)
4 d1tada1 a.66.1.1 (A:57-177) Tr 8.8 1.8E+02 0.013 24.6 5.1 43 528-573 15-75 (121)
5 d1t01a1 a.24.9.1 (A:1-125) Vin 8.1 31 0.0023 30.6 -0.6 46 868-916 58-103 (125)
6 d1svdm1 d.73.1.1 (M:3-110) Rib 8.0 43 0.0031 29.0 0.3 21 872-892 62-82 (108)
7 d1egza_ c.1.8.3 (A:) Endogluca 7.5 2.8E+02 0.02 26.2 6.4 55 354-408 104-159 (291)
8 d1rbli_ d.73.1.1 (I:) Ribulose 7.1 48 0.0035 28.8 0.2 21 872-892 62-82 (109)
9 d1azta1 a.66.1.1 (A:88-201) Tr 5.8 2.9E+02 0.021 23.3 4.8 17 557-573 55-71 (114)
10 d1cipa1 a.66.1.1 (A:61-181) Tr 5.8 2.3E+02 0.017 23.9 4.1 15 559-573 61-75 (121)
No 1
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}
Probab=17.44 E-value=44 Score=29.85 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=36.3
Q ss_pred EEEEEEecCcceeeEecCCCCCCccceEecCCCccHHHHHHHHHHHHHhhCCcEEEEecccC
Q 002393 321 SSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYGNPIIVLNLIKT 382 (928)
Q Consensus 321 sSfVQiRGSIPLfWsQ~~~~l~~KP~I~l~~~d~~~~A~~kHF~~L~~rYG~pIiiVNLLk~ 382 (928)
|+||.+.| +.|+|...+. .+|-+.++....+...+..-.+.|.++ |-.|+++++-..
T Consensus 1 s~f~~~dG-~~l~y~~~G~---g~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~vi~~D~~G~ 57 (271)
T d1va4a_ 1 STFVAKDG-TQIYFKDWGS---GKPVLFSHGWLLDADMWEYQMEYLSSR-GYRTIAFDRRGF 57 (271)
T ss_dssp CEEECTTS-CEEEEEEESS---SSEEEEECCTTCCGGGGHHHHHHHHTT-TCEEEEECCTTS
T ss_pred CEEEeECC-eEEEEEEEcC---CCeEEEECCCCCCHHHHHHHHHHHHhC-CCEEEEEecccc
Confidence 57888888 9999998763 345455554333444444445555554 435889999764
No 2
>d1t6ua_ a.24.22.1 (A:) Nickel-containing superoxide dismutase, NiSOD {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.69 E-value=41 Score=29.54 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=9.6
Q ss_pred CCcccccceecC
Q 002393 910 EDPSQLSRWMIG 921 (928)
Q Consensus 910 ~~~~~~~~~~~~ 921 (928)
+||.+++||+.-
T Consensus 32 ~~~nq~~R~v~~ 43 (117)
T d1t6ua_ 32 DDPHFQTRATVI 43 (117)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 578899999863
No 3
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.42 E-value=1.5e+02 Score=25.03 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCC-C----------------CCCCCchHHHHHHHHHHHHh
Q 002393 528 TNVAQYAYGLAALGRQLHAMGLTDM-P----------------KVNPNSSIAAALMDMYQSMG 573 (928)
Q Consensus 528 TNV~Q~~ig~~aL~~QL~~LGi~~~-~----------------~i~~ds~~~~~l~~lwadnG 573 (928)
.|++++| .+|-..+..||+--. + .-.+..++...++.+|.+.|
T Consensus 15 ~Nii~~m---~~ll~a~~~l~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~ 74 (117)
T d2bcjq1 15 QNIFTAM---QAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPG 74 (117)
T ss_dssp HHHHHHH---HHHHHHHHHHTCCCSSTTHHHHHHHHHTSCSTTCCCCCHHHHHHHHHHHHSHH
T ss_pred HHHHHHH---HHHHHHHHHcCCCCCChhhHHHHHHHHhcccccccccCHHHHHHHHHHHcCHH
Confidence 4666655 344455666776321 1 11245568888899998776
No 4
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.75 E-value=1.8e+02 Score=24.58 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCC-C-----------------CCCCCchHHHHHHHHHHHHh
Q 002393 528 TNVAQYAYGLAALGRQLHAMGLTDM-P-----------------KVNPNSSIAAALMDMYQSMG 573 (928)
Q Consensus 528 TNV~Q~~ig~~aL~~QL~~LGi~~~-~-----------------~i~~ds~~~~~l~~lwadnG 573 (928)
-|++|+| .+|-..+..||+-.. + .-.+...+...++.||.|.|
T Consensus 15 ~Nii~~m---~~li~a~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~i~~LW~D~~ 75 (121)
T d1tada1 15 GNTLQSI---LAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSG 75 (121)
T ss_dssp HHHHHHH---HHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHH---HHHHHHHHHcCCCCCCchHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCCHH
Confidence 4777754 455566778886531 1 11234456777888888776
No 5
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.13 E-value=31 Score=30.61 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=37.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHhcccCcccccccccccCCccccc
Q 002393 868 RMNTIDVVDDHAVEAEMAAALSEYEQIGANLGIIPTSCKSFAEDPSQLS 916 (928)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (928)
+-.+++..||.-+..||-+|+.+-...|..|.. .|..|.+||+-..
T Consensus 58 G~~~a~~s~d~~lk~eM~~A~~~vr~ag~~l~~---aa~~l~~dP~s~~ 103 (125)
T d1t01a1 58 GKETVQTTEDQILKRDMPPAFIKVENACTKLVR---AAQMLQADPYSVP 103 (125)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCTTCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCCChh
Confidence 344567778888999999999999999987653 6778999998764
No 6
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=7.95 E-value=43 Score=29.04 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.9
Q ss_pred ccccchHHHHHHHHHHHHHHH
Q 002393 872 IDVVDDHAVEAEMAAALSEYE 892 (928)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~ 892 (928)
++..|.++|-+|+++.+++|.
T Consensus 62 f~~~d~~~Vl~Ele~c~~~~p 82 (108)
T d1svdm1 62 FGEQNVDNVLAEIEACRSAYP 82 (108)
T ss_dssp TTCCCHHHHHHHHHHHHHHST
T ss_pred cCCCcHHHHHHHHHHHHHHCC
Confidence 889999999999999999987
No 7
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]}
Probab=7.48 E-value=2.8e+02 Score=26.18 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHHHHhhCC-cEEEEecccCccCCchhhHHHHHHHHHHHHhhhcCC
Q 002393 354 PTYQATKMHFEDLAKRYGN-PIIVLNLIKTVEKRPREMMLRREFANAVGYLNTILS 408 (928)
Q Consensus 354 ~~~~A~~kHF~~L~~rYG~-pIiiVNLLk~~Ekk~~E~~L~~~F~~aV~~ln~~lp 408 (928)
.....+...+..+.+||.+ |.++.+|++.-.....-..+..-++.+++.+.+.-|
T Consensus 104 ~~~~~~~~~w~~la~ryk~~p~v~~el~NEP~~~~~~~~~~~~~~~~~~~IR~~d~ 159 (291)
T d1egza_ 104 NNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDP 159 (291)
T ss_dssp GGHHHHHHHHHHHHHHHTTSTTEEEECCSCCCSCCTTTTHHHHHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHhCCCcceeeeeccCcCCCcchhhHHHHHHHHHHHHHhcCC
Confidence 4567789999999999954 666799998522111223466666777777665433
No 8
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=7.08 E-value=48 Score=28.79 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.7
Q ss_pred ccccchHHHHHHHHHHHHHHH
Q 002393 872 IDVVDDHAVEAEMAAALSEYE 892 (928)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~ 892 (928)
++..|.++|-+|+++.+++|.
T Consensus 62 f~~~d~~~Vl~ele~c~~~~p 82 (109)
T d1rbli_ 62 FACAAPQQVLDEVRECRSEYG 82 (109)
T ss_dssp TTCCCHHHHHHHHHHHHHHCT
T ss_pred ccCCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999985
No 9
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.84 E-value=2.9e+02 Score=23.31 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=13.8
Q ss_pred CCchHHHHHHHHHHHHh
Q 002393 557 PNSSIAAALMDMYQSMG 573 (928)
Q Consensus 557 ~ds~~~~~l~~lwadnG 573 (928)
....+...++.||.|.|
T Consensus 55 ~~~e~~~~i~~LW~D~g 71 (114)
T d1azta1 55 FPPEFYEHAKALWEDEG 71 (114)
T ss_dssp CCHHHHHHHHHHHHSHH
T ss_pred cCHHHHHHHHHHhCCHH
Confidence 34568889999999988
No 10
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.79 E-value=2.3e+02 Score=23.86 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHh
Q 002393 559 SSIAAALMDMYQSMG 573 (928)
Q Consensus 559 s~~~~~l~~lwadnG 573 (928)
.++...+..||.+.|
T Consensus 61 ~e~~~~i~~LW~D~~ 75 (121)
T d1cipa1 61 AELAGVIKRLWKDSG 75 (121)
T ss_dssp HHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCHH
Confidence 456667778887765
Done!