Query 002395
Match_columns 928
No_of_seqs 375 out of 2132
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 4E-210 8E-215 1872.1 57.7 791 117-924 7-823 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 9E-206 2E-210 1842.5 72.4 754 118-886 32-818 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 2E-194 4E-199 1724.9 66.1 677 163-841 1-677 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 2E-189 5E-194 1681.5 64.8 659 171-841 1-671 (671)
5 cd01377 MYSc_type_II Myosin mo 100.0 6E-189 1E-193 1685.3 66.8 671 166-841 1-693 (693)
6 cd01380 MYSc_type_V Myosin mot 100.0 5E-189 1E-193 1685.2 64.7 670 171-841 1-691 (691)
7 cd01384 MYSc_type_XI Myosin mo 100.0 3E-188 7E-193 1669.9 63.3 658 170-844 1-673 (674)
8 cd01378 MYSc_type_I Myosin mot 100.0 1E-187 3E-192 1669.2 63.8 656 171-841 1-674 (674)
9 cd01387 MYSc_type_XV Myosin mo 100.0 1E-186 3E-191 1658.8 64.9 667 170-841 1-677 (677)
10 cd01385 MYSc_type_IX Myosin mo 100.0 4E-186 9E-191 1658.0 64.9 668 169-842 6-689 (692)
11 KOG0164 Myosin class I heavy c 100.0 5E-187 1E-191 1558.4 49.0 720 169-915 7-755 (1001)
12 cd01382 MYSc_type_VI Myosin mo 100.0 4E-185 9E-190 1655.1 64.0 663 169-841 3-716 (717)
13 smart00242 MYSc Myosin. Large 100.0 6E-183 1E-187 1635.2 64.5 664 165-842 1-677 (677)
14 cd01379 MYSc_type_III Myosin m 100.0 3E-182 7E-187 1613.2 62.5 634 171-841 1-653 (653)
15 KOG0161 Myosin class II heavy 100.0 8E-183 2E-187 1707.9 52.7 782 98-886 11-817 (1930)
16 cd00124 MYSc Myosin motor doma 100.0 7E-181 2E-185 1621.3 64.7 668 171-841 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 1E-179 3E-184 1610.6 63.8 667 172-841 2-767 (767)
18 KOG0162 Myosin class I heavy c 100.0 2E-181 5E-186 1511.1 45.2 703 168-890 16-738 (1106)
19 PF00063 Myosin_head: Myosin h 100.0 6E-175 1E-179 1583.7 57.4 659 172-830 1-689 (689)
20 KOG0163 Myosin class VI heavy 100.0 2E-173 4E-178 1447.3 53.3 777 120-916 5-835 (1259)
21 KOG0160 Myosin class V heavy c 100.0 2E-172 4E-177 1520.0 49.1 739 164-926 3-750 (862)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-117 4E-122 1074.8 26.5 745 162-908 53-843 (1062)
23 cd01363 Motor_domain Myosin an 98.8 9.7E-09 2.1E-13 106.3 6.7 86 237-330 8-98 (186)
24 KOG4229 Myosin VII, myosin IXB 98.0 8.3E-07 1.8E-11 110.9 -2.4 203 717-926 794-998 (1062)
25 PF02736 Myosin_N: Myosin N-te 97.9 3.4E-05 7.5E-10 60.4 6.4 40 121-160 3-42 (42)
26 PF00612 IQ: IQ calmodulin-bin 97.2 0.00041 8.9E-09 46.0 3.6 20 895-914 2-21 (21)
27 KOG0160 Myosin class V heavy c 96.9 0.00073 1.6E-08 83.3 3.7 87 821-911 671-758 (862)
28 PF00612 IQ: IQ calmodulin-bin 96.5 0.0037 8E-08 41.4 3.4 19 869-887 2-20 (21)
29 KOG0520 Uncharacterized conser 96.3 0.0013 2.9E-08 81.2 1.3 80 846-925 811-922 (975)
30 KOG0925 mRNA splicing factor A 96.0 0.0057 1.2E-07 70.2 4.0 64 209-278 23-87 (699)
31 smart00015 IQ Short calmodulin 95.8 0.011 2.3E-07 41.3 3.3 21 894-914 3-23 (26)
32 PTZ00014 myosin-A; Provisional 95.7 0.019 4.1E-07 72.0 7.2 42 868-912 777-818 (821)
33 PF13207 AAA_17: AAA domain; P 95.3 0.013 2.8E-07 55.6 3.2 23 256-278 1-23 (121)
34 smart00015 IQ Short calmodulin 94.9 0.026 5.7E-07 39.4 2.9 20 868-887 3-22 (26)
35 PF13401 AAA_22: AAA domain; P 94.5 0.027 5.8E-07 54.0 3.0 29 252-280 2-30 (131)
36 cd00009 AAA The AAA+ (ATPases 94.3 0.056 1.2E-06 51.5 4.7 31 249-279 14-44 (151)
37 KOG2128 Ras GTPase-activating 94.3 0.079 1.7E-06 67.8 7.0 75 845-919 565-647 (1401)
38 PF13238 AAA_18: AAA domain; P 94.2 0.035 7.7E-07 52.7 3.0 22 257-278 1-22 (129)
39 PF13191 AAA_16: AAA ATPase do 94.1 0.033 7.1E-07 56.5 2.7 33 249-281 19-51 (185)
40 TIGR02322 phosphon_PhnN phosph 94.0 0.04 8.7E-07 56.3 3.2 25 255-279 2-26 (179)
41 TIGR03015 pepcterm_ATPase puta 93.7 0.11 2.3E-06 56.6 6.0 28 252-279 41-68 (269)
42 cd02019 NK Nucleoside/nucleoti 93.7 0.061 1.3E-06 46.5 3.2 22 257-278 2-23 (69)
43 PRK06696 uridine kinase; Valid 93.2 0.12 2.5E-06 55.2 5.1 40 239-280 9-48 (223)
44 cd01918 HprK_C HprK/P, the bif 93.2 0.075 1.6E-06 53.3 3.3 24 254-277 14-37 (149)
45 PRK05480 uridine/cytidine kina 93.1 0.083 1.8E-06 55.5 3.8 27 252-278 4-30 (209)
46 PF00004 AAA: ATPase family as 93.1 0.069 1.5E-06 50.9 2.9 23 257-279 1-23 (132)
47 cd00820 PEPCK_HprK Phosphoenol 93.1 0.077 1.7E-06 50.2 3.1 23 253-275 14-36 (107)
48 cd01131 PilT Pilus retraction 93.0 0.072 1.6E-06 55.8 3.2 25 256-280 3-27 (198)
49 TIGR00150 HI0065_YjeE ATPase, 93.0 0.15 3.2E-06 50.3 5.1 27 252-278 20-46 (133)
50 smart00382 AAA ATPases associa 92.9 0.069 1.5E-06 50.2 2.5 28 254-281 2-29 (148)
51 PRK13833 conjugal transfer pro 92.9 0.12 2.6E-06 58.3 4.8 35 244-280 136-170 (323)
52 cd01129 PulE-GspE PulE/GspE Th 92.8 0.12 2.7E-06 56.7 4.7 35 245-280 72-106 (264)
53 PRK00300 gmk guanylate kinase; 92.8 0.077 1.7E-06 55.3 2.9 26 253-278 4-29 (205)
54 cd02023 UMPK Uridine monophosp 92.7 0.084 1.8E-06 54.9 3.2 22 257-278 2-23 (198)
55 KOG0520 Uncharacterized conser 92.7 0.16 3.4E-06 63.6 5.8 70 847-918 868-938 (975)
56 PF00485 PRK: Phosphoribulokin 92.6 0.085 1.8E-06 54.9 3.0 26 257-282 2-27 (194)
57 COG0194 Gmk Guanylate kinase [ 92.6 0.086 1.9E-06 54.5 2.9 25 254-278 4-28 (191)
58 TIGR00235 udk uridine kinase. 92.6 0.11 2.5E-06 54.5 3.9 28 252-279 4-31 (207)
59 PF01583 APS_kinase: Adenylyls 92.5 0.14 3E-06 51.8 4.2 29 254-282 2-30 (156)
60 TIGR03420 DnaA_homol_Hda DnaA 92.4 0.19 4.2E-06 53.0 5.5 40 241-280 25-64 (226)
61 PRK08233 hypothetical protein; 92.4 0.085 1.8E-06 53.6 2.6 25 255-279 4-28 (182)
62 COG0444 DppD ABC-type dipeptid 92.4 0.082 1.8E-06 58.8 2.6 28 252-279 29-56 (316)
63 KOG0164 Myosin class I heavy c 92.4 0.36 7.8E-06 58.0 7.9 45 869-917 697-741 (1001)
64 cd02020 CMPK Cytidine monophos 92.3 0.11 2.4E-06 50.7 3.2 23 257-279 2-24 (147)
65 PRK06762 hypothetical protein; 92.3 0.13 2.7E-06 51.9 3.6 25 254-278 2-26 (166)
66 PRK07196 fliI flagellum-specif 92.2 0.2 4.4E-06 58.6 5.7 43 236-278 137-179 (434)
67 TIGR02173 cyt_kin_arch cytidyl 92.2 0.1 2.2E-06 52.5 2.9 23 256-278 2-24 (171)
68 PF12846 AAA_10: AAA-like doma 92.1 0.12 2.6E-06 56.5 3.6 29 254-282 1-29 (304)
69 PRK00131 aroK shikimate kinase 92.1 0.13 2.8E-06 51.7 3.4 26 253-278 3-28 (175)
70 TIGR02782 TrbB_P P-type conjug 92.0 0.18 4E-06 56.4 4.8 34 245-280 125-158 (299)
71 PRK07261 topology modulation p 91.9 0.12 2.6E-06 52.8 3.1 23 256-278 2-24 (171)
72 PRK06547 hypothetical protein; 91.8 0.25 5.3E-06 50.8 5.2 29 250-278 11-39 (172)
73 cd02028 UMPK_like Uridine mono 91.8 0.14 2.9E-06 52.9 3.3 24 257-280 2-25 (179)
74 PRK09270 nucleoside triphospha 91.8 0.27 5.8E-06 52.6 5.6 34 250-283 29-62 (229)
75 PRK05541 adenylylsulfate kinas 91.8 0.12 2.6E-06 52.7 2.9 29 252-280 5-33 (176)
76 PTZ00301 uridine kinase; Provi 91.7 0.14 2.9E-06 54.4 3.2 23 257-279 6-28 (210)
77 cd01130 VirB11-like_ATPase Typ 91.7 0.12 2.5E-06 53.5 2.7 26 254-279 25-50 (186)
78 cd02025 PanK Pantothenate kina 91.7 0.13 2.9E-06 54.8 3.1 24 257-280 2-25 (220)
79 PF05729 NACHT: NACHT domain 91.6 0.16 3.4E-06 50.3 3.5 27 256-282 2-28 (166)
80 PRK08084 DNA replication initi 91.4 0.31 6.8E-06 52.5 5.6 40 241-280 32-71 (235)
81 PF07724 AAA_2: AAA domain (Cd 91.3 0.18 4E-06 51.7 3.6 24 256-279 5-28 (171)
82 PRK08118 topology modulation p 91.3 0.17 3.6E-06 51.7 3.3 25 255-279 2-26 (167)
83 cd00227 CPT Chloramphenicol (C 91.2 0.18 3.8E-06 51.6 3.4 25 254-278 2-26 (175)
84 PRK10078 ribose 1,5-bisphospho 91.1 0.13 2.8E-06 53.1 2.4 23 255-277 3-25 (186)
85 PF13245 AAA_19: Part of AAA d 91.1 0.28 6E-06 43.5 4.1 28 253-280 9-36 (76)
86 PF03668 ATP_bind_2: P-loop AT 91.1 0.15 3.3E-06 56.1 2.9 25 255-279 2-28 (284)
87 PRK14737 gmk guanylate kinase; 91.0 0.16 3.4E-06 52.9 2.8 25 254-278 4-28 (186)
88 TIGR01420 pilT_fam pilus retra 91.0 0.16 3.5E-06 57.8 3.2 35 245-280 114-148 (343)
89 PRK14961 DNA polymerase III su 90.9 0.3 6.4E-06 56.1 5.3 53 224-280 7-64 (363)
90 cd00071 GMPK Guanosine monopho 90.9 0.15 3.2E-06 50.3 2.4 22 257-278 2-23 (137)
91 PF00910 RNA_helicase: RNA hel 90.9 0.19 4E-06 47.3 2.9 24 257-280 1-24 (107)
92 TIGR02928 orc1/cdc6 family rep 90.8 0.25 5.3E-06 56.3 4.5 36 245-280 31-66 (365)
93 PRK13851 type IV secretion sys 90.8 0.22 4.7E-06 56.8 3.9 26 254-279 162-187 (344)
94 PRK00889 adenylylsulfate kinas 90.7 0.28 6.1E-06 49.9 4.4 28 253-280 3-30 (175)
95 TIGR01313 therm_gnt_kin carboh 90.7 0.15 3.3E-06 51.2 2.3 23 257-279 1-23 (163)
96 PRK14738 gmk guanylate kinase; 90.5 0.2 4.4E-06 52.7 3.2 26 252-277 11-36 (206)
97 TIGR00554 panK_bact pantothena 90.5 0.48 1E-05 52.8 6.2 31 251-281 59-89 (290)
98 PF00437 T2SE: Type II/IV secr 90.4 0.18 3.8E-06 55.3 2.7 29 253-281 126-154 (270)
99 cd02027 APSK Adenosine 5'-phos 90.4 0.23 4.9E-06 49.6 3.2 24 257-280 2-25 (149)
100 PF03266 NTPase_1: NTPase; In 90.4 0.23 4.9E-06 50.9 3.3 24 257-280 2-25 (168)
101 TIGR02524 dot_icm_DotB Dot/Icm 90.3 0.21 4.5E-06 57.3 3.2 29 253-281 133-161 (358)
102 PRK03846 adenylylsulfate kinas 90.3 0.38 8.2E-06 50.3 5.0 32 250-281 20-51 (198)
103 cd02024 NRK1 Nicotinamide ribo 90.3 0.2 4.3E-06 52.2 2.8 22 257-278 2-23 (187)
104 PRK13900 type IV secretion sys 90.2 0.3 6.4E-06 55.5 4.3 31 247-279 155-185 (332)
105 COG1660 Predicted P-loop-conta 90.1 0.19 4.2E-06 54.3 2.5 25 256-280 3-29 (286)
106 TIGR03263 guanyl_kin guanylate 90.0 0.17 3.8E-06 51.5 2.1 24 255-278 2-25 (180)
107 PRK10751 molybdopterin-guanine 90.0 0.26 5.6E-06 50.7 3.3 26 256-281 8-33 (173)
108 COG1125 OpuBA ABC-type proline 90.0 0.2 4.3E-06 54.2 2.5 25 255-279 28-52 (309)
109 PRK06217 hypothetical protein; 90.0 0.22 4.8E-06 51.3 2.9 23 256-278 3-25 (183)
110 PF13671 AAA_33: AAA domain; P 89.9 0.2 4.3E-06 48.8 2.3 23 257-279 2-24 (143)
111 cd01120 RecA-like_NTPases RecA 89.9 0.27 5.9E-06 48.2 3.3 25 257-281 2-26 (165)
112 TIGR02525 plasmid_TraJ plasmid 89.8 0.24 5.2E-06 57.0 3.3 27 254-280 149-175 (372)
113 cd01124 KaiC KaiC is a circadi 89.6 0.37 8E-06 49.2 4.2 27 256-282 1-27 (187)
114 PF03205 MobB: Molybdopterin g 89.6 0.3 6.4E-06 48.5 3.3 27 256-282 2-28 (140)
115 PRK08903 DnaA regulatory inact 89.6 0.61 1.3E-05 49.6 6.0 30 252-281 40-69 (227)
116 PRK12377 putative replication 89.4 0.53 1.2E-05 51.3 5.3 45 235-281 84-128 (248)
117 cd00464 SK Shikimate kinase (S 89.4 0.27 6E-06 48.4 2.9 23 256-278 1-23 (154)
118 PRK12402 replication factor C 89.4 0.47 1E-05 53.3 5.1 35 246-280 28-62 (337)
119 PRK00411 cdc6 cell division co 89.2 0.4 8.6E-06 55.3 4.5 35 246-280 47-81 (394)
120 PRK08472 fliI flagellum-specif 89.2 1.8 3.9E-05 50.8 9.8 42 237-278 140-181 (434)
121 COG1102 Cmk Cytidylate kinase 89.2 0.3 6.6E-06 49.4 2.9 24 257-280 3-26 (179)
122 TIGR01360 aden_kin_iso1 adenyl 89.1 0.31 6.8E-06 49.7 3.2 23 256-278 5-27 (188)
123 PRK04182 cytidylate kinase; Pr 89.0 0.29 6.4E-06 49.5 2.8 23 256-278 2-24 (180)
124 cd02021 GntK Gluconate kinase 88.7 0.31 6.7E-06 48.1 2.7 21 257-277 2-22 (150)
125 COG2204 AtoC Response regulato 88.7 0.5 1.1E-05 55.6 4.8 64 252-320 162-233 (464)
126 PRK05057 aroK shikimate kinase 88.7 0.34 7.4E-06 49.6 3.1 25 254-278 4-28 (172)
127 PF07475 Hpr_kinase_C: HPr Ser 88.7 0.35 7.6E-06 49.5 3.1 23 254-276 18-40 (171)
128 PRK13764 ATPase; Provisional 88.6 0.43 9.3E-06 58.1 4.2 26 255-280 258-283 (602)
129 TIGR02533 type_II_gspE general 88.5 0.42 9.1E-06 57.1 4.1 35 244-279 233-267 (486)
130 COG0572 Udk Uridine kinase [Nu 88.5 0.36 7.7E-06 51.3 3.1 23 257-279 11-33 (218)
131 COG4608 AppF ABC-type oligopep 88.5 0.3 6.6E-06 53.3 2.6 32 252-283 37-68 (268)
132 COG5022 Myosin heavy chain [Cy 88.4 0.68 1.5E-05 60.0 6.0 81 844-925 792-873 (1463)
133 PHA00729 NTP-binding motif con 88.4 0.72 1.6E-05 49.5 5.3 38 241-279 5-42 (226)
134 PRK13342 recombination factor 88.3 0.47 1E-05 55.5 4.3 44 234-278 17-60 (413)
135 COG0563 Adk Adenylate kinase a 88.3 0.38 8.3E-06 49.7 3.1 22 257-278 3-24 (178)
136 PHA02544 44 clamp loader, smal 88.2 0.48 1E-05 53.0 4.1 35 244-278 32-67 (316)
137 PF13555 AAA_29: P-loop contai 88.1 0.54 1.2E-05 40.1 3.4 23 256-278 25-47 (62)
138 PRK14964 DNA polymerase III su 88.0 0.61 1.3E-05 55.6 5.0 55 224-281 4-62 (491)
139 PRK14527 adenylate kinase; Pro 88.0 0.4 8.7E-06 49.7 3.1 28 252-279 4-31 (191)
140 PRK04040 adenylate kinase; Pro 87.9 0.45 9.8E-06 49.5 3.5 25 255-279 3-27 (188)
141 PRK08727 hypothetical protein; 87.9 0.8 1.7E-05 49.2 5.4 32 251-282 38-69 (233)
142 PRK09825 idnK D-gluconate kina 87.9 0.43 9.4E-06 49.1 3.2 26 254-279 3-28 (176)
143 PRK07667 uridine kinase; Provi 87.8 0.74 1.6E-05 48.0 5.0 26 255-280 18-43 (193)
144 PRK14732 coaE dephospho-CoA ki 87.8 0.33 7.2E-06 50.9 2.4 48 257-304 2-54 (196)
145 PRK12608 transcription termina 87.8 0.54 1.2E-05 54.0 4.2 42 239-280 118-159 (380)
146 PRK00440 rfc replication facto 87.7 0.69 1.5E-05 51.4 5.0 38 243-280 27-64 (319)
147 cd03115 SRP The signal recogni 87.6 0.55 1.2E-05 47.6 3.8 27 256-282 2-28 (173)
148 PF02367 UPF0079: Uncharacteri 87.5 0.83 1.8E-05 44.4 4.8 27 252-278 13-39 (123)
149 COG0802 Predicted ATPase or ki 87.5 1 2.2E-05 45.1 5.4 30 251-280 22-51 (149)
150 PRK06893 DNA replication initi 87.5 0.9 1.9E-05 48.7 5.5 45 235-281 22-66 (229)
151 COG0529 CysC Adenylylsulfate k 87.5 0.81 1.8E-05 47.1 4.8 33 250-282 19-51 (197)
152 cd03293 ABC_NrtD_SsuB_transpor 87.5 0.41 8.9E-06 50.6 2.9 27 252-278 28-54 (220)
153 PRK13894 conjugal transfer ATP 87.5 0.43 9.2E-06 53.9 3.1 27 254-280 148-174 (319)
154 PRK14956 DNA polymerase III su 87.4 0.62 1.3E-05 55.2 4.5 53 225-281 10-67 (484)
155 cd02029 PRK_like Phosphoribulo 87.4 0.51 1.1E-05 51.8 3.6 24 257-280 2-25 (277)
156 PF00625 Guanylate_kin: Guanyl 87.4 0.45 9.8E-06 48.9 3.0 25 255-279 3-27 (183)
157 TIGR01166 cbiO cobalt transpor 87.3 0.45 9.7E-06 49.1 3.0 25 252-276 16-40 (190)
158 TIGR00176 mobB molybdopterin-g 87.2 0.58 1.2E-05 47.2 3.6 26 257-282 2-27 (155)
159 PF03193 DUF258: Protein of un 87.2 0.3 6.6E-06 49.6 1.6 25 253-277 34-58 (161)
160 PF07728 AAA_5: AAA domain (dy 87.1 0.49 1.1E-05 46.1 3.0 23 256-278 1-23 (139)
161 TIGR02673 FtsE cell division A 87.1 0.46 9.9E-06 49.9 3.0 27 252-278 26-52 (214)
162 COG1124 DppF ABC-type dipeptid 87.1 0.46 1E-05 51.1 2.9 30 252-281 31-60 (252)
163 TIGR00960 3a0501s02 Type II (G 87.1 0.46 9.9E-06 50.1 3.0 27 252-278 27-53 (216)
164 PRK15093 antimicrobial peptide 87.1 0.45 9.7E-06 54.0 3.0 27 252-278 31-57 (330)
165 TIGR01359 UMP_CMP_kin_fam UMP- 87.0 0.48 1E-05 48.3 3.0 23 257-279 2-24 (183)
166 PRK05416 glmZ(sRNA)-inactivati 87.0 0.45 9.8E-06 53.0 3.0 21 254-274 6-26 (288)
167 PRK06761 hypothetical protein; 86.9 0.45 9.7E-06 52.8 2.8 26 255-280 4-29 (282)
168 cd03259 ABC_Carb_Solutes_like 86.9 0.5 1.1E-05 49.7 3.1 27 252-278 24-50 (213)
169 PRK15177 Vi polysaccharide exp 86.9 0.48 1E-05 50.1 3.0 28 252-279 11-38 (213)
170 COG1493 HprK Serine kinase of 86.9 0.52 1.1E-05 52.0 3.2 28 254-281 145-172 (308)
171 PRK00698 tmk thymidylate kinas 86.8 0.68 1.5E-05 48.0 4.1 28 254-281 3-30 (205)
172 cd03225 ABC_cobalt_CbiO_domain 86.8 0.51 1.1E-05 49.4 3.1 27 252-278 25-51 (211)
173 COG1123 ATPase components of v 86.8 0.37 8.1E-06 57.5 2.2 29 252-280 315-343 (539)
174 PF00005 ABC_tran: ABC transpo 86.7 0.43 9.3E-06 46.2 2.3 26 253-278 10-35 (137)
175 PRK11308 dppF dipeptide transp 86.6 0.48 1E-05 53.7 3.0 27 252-278 39-65 (327)
176 COG2884 FtsE Predicted ATPase 86.6 0.49 1.1E-05 49.3 2.7 24 254-277 28-51 (223)
177 TIGR00152 dephospho-CoA kinase 86.6 0.53 1.2E-05 48.6 3.1 46 257-302 2-53 (188)
178 TIGR03499 FlhF flagellar biosy 86.6 0.64 1.4E-05 51.5 3.9 29 253-281 193-221 (282)
179 TIGR02788 VirB11 P-type DNA tr 86.6 0.39 8.5E-06 53.9 2.2 26 254-279 144-169 (308)
180 cd03255 ABC_MJ0796_Lo1CDE_FtsE 86.5 0.52 1.1E-05 49.7 3.0 27 252-278 28-54 (218)
181 PRK08356 hypothetical protein; 86.5 0.47 1E-05 49.4 2.6 22 255-276 6-27 (195)
182 cd03260 ABC_PstB_phosphate_tra 86.5 0.54 1.2E-05 49.9 3.1 27 252-278 24-50 (227)
183 PRK06645 DNA polymerase III su 86.4 0.83 1.8E-05 54.8 4.9 45 234-281 26-70 (507)
184 PF00308 Bac_DnaA: Bacterial d 86.4 1 2.2E-05 48.1 5.2 42 240-281 18-61 (219)
185 TIGR02902 spore_lonB ATP-depen 86.4 0.86 1.9E-05 55.1 5.1 32 248-279 80-111 (531)
186 TIGR00455 apsK adenylylsulfate 86.4 0.91 2E-05 46.6 4.6 29 252-280 16-44 (184)
187 PRK09473 oppD oligopeptide tra 86.3 0.48 1E-05 53.8 2.7 27 252-278 40-66 (330)
188 TIGR03608 L_ocin_972_ABC putat 86.3 0.54 1.2E-05 49.0 3.0 27 252-278 22-48 (206)
189 COG1123 ATPase components of v 86.3 0.41 8.8E-06 57.2 2.2 30 252-281 33-62 (539)
190 cd03292 ABC_FtsE_transporter F 86.3 0.54 1.2E-05 49.3 3.0 27 252-278 25-51 (214)
191 PRK08116 hypothetical protein; 86.3 1.2 2.5E-05 49.1 5.7 47 235-281 94-141 (268)
192 PRK14962 DNA polymerase III su 86.2 0.87 1.9E-05 54.2 5.0 52 225-280 6-62 (472)
193 PRK15079 oligopeptide ABC tran 86.2 0.52 1.1E-05 53.5 3.0 27 252-278 45-71 (331)
194 cd03229 ABC_Class3 This class 86.2 0.58 1.3E-05 47.9 3.1 27 252-278 24-50 (178)
195 PRK09111 DNA polymerase III su 86.2 0.75 1.6E-05 56.3 4.5 37 245-281 36-73 (598)
196 TIGR02868 CydC thiol reductant 86.2 0.38 8.3E-06 57.9 2.0 29 252-280 359-387 (529)
197 cd03296 ABC_CysA_sulfate_impor 86.1 0.56 1.2E-05 50.3 3.0 27 252-278 26-52 (239)
198 PRK09112 DNA polymerase III su 86.1 1 2.2E-05 51.5 5.3 41 240-280 30-71 (351)
199 cd03258 ABC_MetN_methionine_tr 86.0 0.44 9.5E-06 50.8 2.1 28 252-279 29-56 (233)
200 PF13604 AAA_30: AAA domain; P 85.9 1.1 2.3E-05 47.0 4.9 38 243-281 8-45 (196)
201 PF04665 Pox_A32: Poxvirus A32 85.9 0.59 1.3E-05 50.6 3.1 26 255-280 14-39 (241)
202 TIGR00678 holB DNA polymerase 85.9 1.1 2.4E-05 46.1 5.0 37 245-281 4-41 (188)
203 PRK15453 phosphoribulokinase; 85.9 0.67 1.5E-05 51.3 3.5 25 254-278 5-29 (290)
204 PRK14957 DNA polymerase III su 85.9 0.94 2E-05 54.7 5.1 53 224-280 7-64 (546)
205 PRK03839 putative kinase; Prov 85.9 0.63 1.4E-05 47.6 3.2 22 257-278 3-24 (180)
206 TIGR02881 spore_V_K stage V sp 85.9 0.7 1.5E-05 50.5 3.7 30 253-282 41-70 (261)
207 PRK14528 adenylate kinase; Pro 85.8 0.69 1.5E-05 48.0 3.4 24 255-278 2-25 (186)
208 cd01983 Fer4_NifH The Fer4_Nif 85.8 0.84 1.8E-05 40.4 3.6 25 257-281 2-26 (99)
209 PRK14974 cell division protein 85.8 1.3 2.9E-05 50.3 5.9 31 252-282 138-168 (336)
210 PHA02530 pseT polynucleotide k 85.8 0.59 1.3E-05 51.8 3.1 24 255-278 3-26 (300)
211 cd03224 ABC_TM1139_LivF_branch 85.8 0.62 1.3E-05 49.2 3.1 26 252-277 24-49 (222)
212 COG4172 ABC-type uncharacteriz 85.7 0.49 1.1E-05 54.2 2.4 28 254-281 36-63 (534)
213 PRK14531 adenylate kinase; Pro 85.7 0.72 1.6E-05 47.5 3.5 25 255-279 3-27 (183)
214 PLN03025 replication factor C 85.7 1.1 2.4E-05 50.5 5.2 37 244-280 24-60 (319)
215 cd03235 ABC_Metallic_Cations A 85.7 0.56 1.2E-05 49.3 2.7 27 252-278 23-49 (213)
216 cd03116 MobB Molybdenum is an 85.6 0.87 1.9E-05 46.2 4.0 28 255-282 2-29 (159)
217 PRK11022 dppD dipeptide transp 85.6 0.58 1.2E-05 53.0 2.9 27 252-278 31-57 (326)
218 cd03297 ABC_ModC_molybdenum_tr 85.6 0.65 1.4E-05 48.9 3.1 26 252-278 22-47 (214)
219 TIGR03864 PQQ_ABC_ATP ABC tran 85.4 0.64 1.4E-05 49.8 3.0 27 252-278 25-51 (236)
220 cd03256 ABC_PhnC_transporter A 85.4 0.63 1.4E-05 49.8 3.0 27 252-278 25-51 (241)
221 cd01672 TMPK Thymidine monopho 85.4 0.78 1.7E-05 46.9 3.6 24 257-280 3-26 (200)
222 PRK14734 coaE dephospho-CoA ki 85.4 0.61 1.3E-05 49.0 2.8 49 256-304 3-56 (200)
223 COG4172 ABC-type uncharacteriz 85.4 0.55 1.2E-05 53.9 2.5 31 251-281 310-340 (534)
224 COG2805 PilT Tfp pilus assembl 85.4 0.68 1.5E-05 51.3 3.2 75 194-280 69-151 (353)
225 TIGR00064 ftsY signal recognit 85.3 1.5 3.3E-05 48.3 6.0 47 236-282 45-100 (272)
226 cd03268 ABC_BcrA_bacitracin_re 85.3 0.67 1.5E-05 48.5 3.1 27 252-278 24-50 (208)
227 KOG0922 DEAH-box RNA helicase 85.3 1.6 3.6E-05 52.7 6.5 101 252-357 64-180 (674)
228 cd02034 CooC The accessory pro 85.3 0.88 1.9E-05 43.7 3.6 26 257-282 2-27 (116)
229 TIGR02315 ABC_phnC phosphonate 85.2 0.64 1.4E-05 49.8 3.0 27 252-278 26-52 (243)
230 COG1428 Deoxynucleoside kinase 85.2 0.79 1.7E-05 48.4 3.5 44 254-302 4-47 (216)
231 PRK05428 HPr kinase/phosphoryl 85.2 0.67 1.5E-05 51.9 3.1 24 254-277 146-169 (308)
232 TIGR03574 selen_PSTK L-seryl-t 85.2 0.69 1.5E-05 50.1 3.2 24 257-280 2-25 (249)
233 PLN02318 phosphoribulokinase/u 85.1 1 2.2E-05 54.5 4.8 44 235-278 45-89 (656)
234 cd03265 ABC_DrrA DrrA is the A 85.0 0.7 1.5E-05 48.9 3.1 25 252-276 24-48 (220)
235 PRK14969 DNA polymerase III su 85.0 1 2.3E-05 54.3 4.9 52 225-280 8-64 (527)
236 cd03266 ABC_NatA_sodium_export 84.9 0.7 1.5E-05 48.7 3.0 25 252-276 29-53 (218)
237 cd03219 ABC_Mj1267_LivG_branch 84.9 0.66 1.4E-05 49.5 2.9 27 252-278 24-50 (236)
238 cd03269 ABC_putative_ATPase Th 84.9 0.71 1.5E-05 48.4 3.1 26 252-277 24-49 (210)
239 cd02026 PRK Phosphoribulokinas 84.9 0.69 1.5E-05 51.1 3.1 22 257-278 2-23 (273)
240 PRK11176 lipid transporter ATP 84.9 0.57 1.2E-05 57.0 2.7 29 252-280 367-395 (582)
241 PRK10416 signal recognition pa 84.9 0.96 2.1E-05 51.1 4.3 31 252-282 112-142 (318)
242 PRK10646 ADP-binding protein; 84.9 1.7 3.7E-05 43.9 5.5 26 254-279 28-53 (153)
243 COG2274 SunT ABC-type bacterio 84.9 0.62 1.3E-05 58.0 3.0 29 252-280 497-525 (709)
244 PRK08972 fliI flagellum-specif 84.9 1.7 3.7E-05 51.0 6.3 40 237-276 145-184 (444)
245 PRK11124 artP arginine transpo 84.8 0.7 1.5E-05 49.6 3.0 26 252-277 26-51 (242)
246 PRK13768 GTPase; Provisional 84.8 0.84 1.8E-05 49.8 3.7 27 256-282 4-30 (253)
247 PF12774 AAA_6: Hydrolytic ATP 84.8 0.89 1.9E-05 49.0 3.8 41 240-280 17-58 (231)
248 smart00072 GuKc Guanylate kina 84.8 0.69 1.5E-05 47.7 2.9 23 256-278 4-26 (184)
249 cd03262 ABC_HisP_GlnQ_permease 84.8 0.71 1.5E-05 48.4 3.0 27 252-278 24-50 (213)
250 PRK14963 DNA polymerase III su 84.8 0.96 2.1E-05 54.3 4.5 45 234-281 19-63 (504)
251 TIGR02880 cbbX_cfxQ probable R 84.8 0.79 1.7E-05 50.9 3.5 27 256-282 60-86 (284)
252 PRK10436 hypothetical protein; 84.8 0.67 1.5E-05 54.9 3.1 36 244-280 209-244 (462)
253 cd03223 ABCD_peroxisomal_ALDP 84.7 0.74 1.6E-05 46.7 3.0 28 252-279 25-52 (166)
254 cd03226 ABC_cobalt_CbiO_domain 84.7 0.7 1.5E-05 48.3 2.9 26 252-277 24-49 (205)
255 TIGR01184 ntrCD nitrate transp 84.7 0.72 1.6E-05 49.3 3.0 27 253-279 10-36 (230)
256 PRK04220 2-phosphoglycerate ki 84.7 1.1 2.4E-05 50.1 4.5 28 251-278 89-116 (301)
257 PRK10908 cell division protein 84.6 0.73 1.6E-05 48.8 3.0 26 252-277 26-51 (222)
258 cd03230 ABC_DR_subfamily_A Thi 84.6 0.76 1.6E-05 46.8 3.0 26 252-277 24-49 (173)
259 PRK13539 cytochrome c biogenes 84.6 0.75 1.6E-05 48.3 3.0 26 252-277 26-51 (207)
260 TIGR00972 3a0107s01c2 phosphat 84.5 0.73 1.6E-05 49.7 3.0 27 252-278 25-51 (247)
261 PF01637 Arch_ATPase: Archaeal 84.5 0.66 1.4E-05 48.4 2.6 33 246-278 12-44 (234)
262 cd03245 ABCC_bacteriocin_expor 84.5 0.74 1.6E-05 48.6 3.0 26 252-277 28-53 (220)
263 TIGR01978 sufC FeS assembly AT 84.5 0.72 1.6E-05 49.4 3.0 26 252-277 24-49 (243)
264 PF01695 IstB_IS21: IstB-like 84.5 0.96 2.1E-05 46.7 3.7 30 252-281 45-74 (178)
265 PRK00023 cmk cytidylate kinase 84.5 0.79 1.7E-05 49.1 3.2 26 254-279 4-29 (225)
266 PRK02496 adk adenylate kinase; 84.5 0.81 1.8E-05 47.0 3.2 22 257-278 4-25 (184)
267 TIGR03410 urea_trans_UrtE urea 84.3 0.75 1.6E-05 48.9 3.0 27 252-278 24-50 (230)
268 TIGR02211 LolD_lipo_ex lipopro 84.3 0.78 1.7E-05 48.4 3.1 26 252-277 29-54 (221)
269 PF00158 Sigma54_activat: Sigm 84.2 0.66 1.4E-05 47.5 2.4 25 252-276 20-44 (168)
270 cd03218 ABC_YhbG The ABC trans 84.2 0.79 1.7E-05 48.8 3.1 27 252-278 24-50 (232)
271 PLN02796 D-glycerate 3-kinase 84.2 0.78 1.7E-05 52.2 3.1 25 255-279 101-125 (347)
272 PRK10584 putative ABC transpor 84.2 0.78 1.7E-05 48.7 3.0 27 252-278 34-60 (228)
273 COG4619 ABC-type uncharacteriz 84.1 0.76 1.6E-05 47.0 2.6 23 254-276 29-51 (223)
274 cd03301 ABC_MalK_N The N-termi 84.0 0.82 1.8E-05 48.0 3.1 27 252-278 24-50 (213)
275 PRK14959 DNA polymerase III su 84.0 1.2 2.6E-05 54.5 4.8 53 224-280 7-64 (624)
276 cd03294 ABC_Pro_Gly_Bertaine T 84.0 0.78 1.7E-05 50.3 3.0 27 252-278 48-74 (269)
277 cd03270 ABC_UvrA_I The excisio 84.0 0.81 1.7E-05 48.9 3.0 24 252-275 19-42 (226)
278 PRK11629 lolD lipoprotein tran 83.9 0.81 1.8E-05 48.9 3.0 26 252-277 33-58 (233)
279 TIGR02770 nickel_nikD nickel i 83.9 0.79 1.7E-05 48.9 2.9 27 252-278 10-36 (230)
280 PRK14242 phosphate transporter 83.9 0.79 1.7E-05 49.6 2.9 27 252-278 30-56 (253)
281 PRK11248 tauB taurine transpor 83.8 0.81 1.8E-05 49.8 3.0 27 252-278 25-51 (255)
282 PRK14731 coaE dephospho-CoA ki 83.8 0.74 1.6E-05 48.6 2.6 49 256-304 7-60 (208)
283 PRK14950 DNA polymerase III su 83.8 1.3 2.8E-05 54.3 5.0 54 225-281 8-65 (585)
284 TIGR02903 spore_lon_C ATP-depe 83.8 1.3 2.7E-05 54.6 5.0 35 246-280 167-201 (615)
285 TIGR02640 gas_vesic_GvpN gas v 83.8 1.3 2.9E-05 48.4 4.7 41 235-278 5-45 (262)
286 cd03234 ABCG_White The White s 83.8 0.88 1.9E-05 48.4 3.2 28 252-279 31-58 (226)
287 PRK13541 cytochrome c biogenes 83.7 0.86 1.9E-05 47.3 3.1 27 252-278 24-50 (195)
288 PRK13695 putative NTPase; Prov 83.7 0.94 2E-05 46.1 3.3 24 257-280 3-26 (174)
289 PRK04195 replication factor C 83.7 1.1 2.3E-05 53.6 4.2 27 252-278 37-63 (482)
290 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.7 0.93 2E-05 47.4 3.3 26 256-281 40-65 (205)
291 KOG0744 AAA+-type ATPase [Post 83.6 1.1 2.5E-05 50.0 4.0 47 235-281 152-204 (423)
292 PRK03731 aroL shikimate kinase 83.6 0.96 2.1E-05 45.7 3.3 25 255-279 3-27 (171)
293 TIGR03238 dnd_assoc_3 dnd syst 83.6 1.1 2.4E-05 53.0 4.1 37 236-272 9-50 (504)
294 cd03298 ABC_ThiQ_thiamine_tran 83.6 0.85 1.9E-05 47.8 3.0 27 252-278 22-48 (211)
295 PF13173 AAA_14: AAA domain 83.6 1 2.2E-05 43.5 3.3 26 254-279 2-27 (128)
296 cd03222 ABC_RNaseL_inhibitor T 83.5 0.84 1.8E-05 47.1 2.8 28 252-279 23-50 (177)
297 PRK05342 clpX ATP-dependent pr 83.5 1.4 3.1E-05 51.5 5.1 61 218-278 59-132 (412)
298 cd03238 ABC_UvrA The excision 83.5 0.89 1.9E-05 46.9 3.0 24 252-275 19-42 (176)
299 cd03237 ABC_RNaseL_inhibitor_d 83.5 0.85 1.9E-05 49.5 3.0 26 253-278 24-49 (246)
300 PRK13645 cbiO cobalt transport 83.5 0.79 1.7E-05 50.8 2.8 27 252-278 35-61 (289)
301 cd03261 ABC_Org_Solvent_Resist 83.5 0.86 1.9E-05 48.7 3.0 27 252-278 24-50 (235)
302 PF00448 SRP54: SRP54-type pro 83.4 1.1 2.3E-05 47.2 3.6 28 254-281 1-28 (196)
303 cd03267 ABC_NatA_like Similar 83.4 0.86 1.9E-05 48.9 3.0 26 252-277 45-70 (236)
304 TIGR00679 hpr-ser Hpr(Ser) kin 83.4 0.91 2E-05 50.7 3.2 24 254-277 146-169 (304)
305 PRK13538 cytochrome c biogenes 83.3 0.91 2E-05 47.5 3.1 27 252-278 25-51 (204)
306 PRK09087 hypothetical protein; 83.3 1.5 3.2E-05 47.1 4.7 24 253-276 43-66 (226)
307 PRK14247 phosphate ABC transpo 83.3 0.88 1.9E-05 49.1 3.0 27 252-278 27-53 (250)
308 PRK06620 hypothetical protein; 83.3 1.6 3.4E-05 46.5 4.9 20 255-274 45-64 (214)
309 PRK13540 cytochrome c biogenes 83.3 0.92 2E-05 47.3 3.0 26 252-277 25-50 (200)
310 PRK14530 adenylate kinase; Pro 83.2 0.96 2.1E-05 47.8 3.2 24 256-279 5-28 (215)
311 TIGR00017 cmk cytidylate kinas 83.2 1 2.2E-05 48.0 3.4 24 256-279 4-27 (217)
312 PRK05896 DNA polymerase III su 83.1 1.5 3.2E-05 53.5 5.0 55 224-282 7-66 (605)
313 PRK14960 DNA polymerase III su 83.1 1.4 3E-05 54.1 4.8 52 225-280 7-63 (702)
314 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 83.1 0.9 1.9E-05 48.4 2.9 26 252-277 46-71 (224)
315 PRK13947 shikimate kinase; Pro 83.1 1.1 2.3E-05 45.3 3.3 23 256-278 3-25 (171)
316 PRK14248 phosphate ABC transpo 83.0 0.91 2E-05 49.7 3.0 27 252-278 45-71 (268)
317 cd03247 ABCC_cytochrome_bd The 83.0 0.95 2.1E-05 46.3 3.0 27 252-278 26-52 (178)
318 PRK10247 putative ABC transpor 83.0 0.94 2E-05 48.2 3.1 26 252-277 31-56 (225)
319 PRK11247 ssuB aliphatic sulfon 83.0 0.9 2E-05 49.6 3.0 27 252-278 36-62 (257)
320 cd03257 ABC_NikE_OppD_transpor 83.0 0.9 2E-05 48.1 2.9 27 252-278 29-55 (228)
321 cd03232 ABC_PDR_domain2 The pl 83.0 0.94 2E-05 47.0 3.0 25 252-276 31-55 (192)
322 TIGR02538 type_IV_pilB type IV 82.9 0.87 1.9E-05 55.5 3.1 26 254-279 316-341 (564)
323 PRK14251 phosphate ABC transpo 82.9 0.93 2E-05 48.9 3.0 27 252-278 28-54 (251)
324 TIGR00635 ruvB Holliday juncti 82.9 1.5 3.2E-05 48.7 4.7 27 252-278 28-54 (305)
325 PRK08533 flagellar accessory p 82.9 1.7 3.6E-05 46.8 4.9 28 253-280 23-50 (230)
326 cd03250 ABCC_MRP_domain1 Domai 82.9 0.96 2.1E-05 47.2 3.0 27 252-278 29-55 (204)
327 TIGR02746 TraC-F-type type-IV 82.9 1.3 2.8E-05 56.2 4.7 30 253-282 429-458 (797)
328 PF13479 AAA_24: AAA domain 82.9 0.82 1.8E-05 48.4 2.5 22 253-274 2-23 (213)
329 cd03214 ABC_Iron-Siderophores_ 82.9 0.99 2.2E-05 46.3 3.1 27 252-278 23-49 (180)
330 CHL00081 chlI Mg-protoporyphyr 82.8 1.5 3.2E-05 50.2 4.7 31 250-280 34-64 (350)
331 COG2804 PulE Type II secretory 82.8 0.96 2.1E-05 53.4 3.2 38 242-280 247-284 (500)
332 PRK08154 anaerobic benzoate ca 82.8 1.5 3.3E-05 49.2 4.8 42 237-278 116-157 (309)
333 TIGR02858 spore_III_AA stage I 82.7 1.3 2.9E-05 48.8 4.2 41 240-280 97-137 (270)
334 cd03263 ABC_subfamily_A The AB 82.7 1 2.2E-05 47.6 3.1 27 252-278 26-52 (220)
335 PLN02348 phosphoribulokinase 82.6 1.6 3.4E-05 50.5 4.8 29 252-280 47-75 (395)
336 PRK10419 nikE nickel transport 82.6 0.94 2E-05 49.7 2.9 25 252-276 36-60 (268)
337 COG1136 SalX ABC-type antimicr 82.6 0.89 1.9E-05 48.8 2.6 22 253-274 30-51 (226)
338 cd03254 ABCC_Glucan_exporter_l 82.6 0.98 2.1E-05 48.0 3.0 27 252-278 27-53 (229)
339 TIGR02323 CP_lyasePhnK phospho 82.6 0.95 2.1E-05 48.9 2.9 27 252-278 27-53 (253)
340 COG0630 VirB11 Type IV secreto 82.6 1.2 2.7E-05 50.1 3.9 26 254-279 143-168 (312)
341 PRK09493 glnQ glutamine ABC tr 82.5 0.99 2.2E-05 48.4 3.0 27 252-278 25-51 (240)
342 cd03215 ABC_Carb_Monos_II This 82.5 1 2.2E-05 46.3 2.9 27 252-278 24-50 (182)
343 TIGR01277 thiQ thiamine ABC tr 82.5 0.97 2.1E-05 47.6 2.9 27 252-278 22-48 (213)
344 PRK09099 type III secretion sy 82.5 3.4 7.3E-05 48.8 7.5 38 240-277 149-186 (441)
345 PRK14730 coaE dephospho-CoA ki 82.5 1.3 2.9E-05 46.3 3.9 47 257-304 4-57 (195)
346 PRK14955 DNA polymerase III su 82.4 1.8 3.9E-05 50.4 5.3 37 244-280 27-64 (397)
347 PF14532 Sigma54_activ_2: Sigm 82.4 0.59 1.3E-05 45.8 1.1 26 252-277 19-44 (138)
348 cd03290 ABCC_SUR1_N The SUR do 82.3 1 2.2E-05 47.5 3.0 27 252-278 25-51 (218)
349 PRK14958 DNA polymerase III su 82.3 1.6 3.5E-05 52.5 5.0 53 224-280 7-64 (509)
350 TIGR00101 ureG urease accessor 82.3 1.2 2.6E-05 46.8 3.5 26 255-280 2-27 (199)
351 PRK09435 membrane ATPase/prote 82.3 2.4 5.1E-05 48.2 6.0 31 251-281 53-83 (332)
352 TIGR02203 MsbA_lipidA lipid A 82.3 0.86 1.9E-05 55.3 2.7 30 252-281 356-385 (571)
353 PRK06526 transposase; Provisio 82.3 1.2 2.5E-05 48.8 3.5 29 253-281 97-125 (254)
354 COG1126 GlnQ ABC-type polar am 82.3 1 2.2E-05 47.8 2.9 22 253-274 27-48 (240)
355 TIGR00968 3a0106s01 sulfate AB 82.3 1 2.2E-05 48.3 3.0 27 252-278 24-50 (237)
356 PRK13648 cbiO cobalt transport 82.3 1 2.2E-05 49.4 3.0 27 252-278 33-59 (269)
357 PRK14250 phosphate ABC transpo 82.2 1 2.2E-05 48.5 3.0 26 252-277 27-52 (241)
358 TIGR00041 DTMP_kinase thymidyl 82.2 1.3 2.7E-05 45.8 3.6 27 254-280 3-29 (195)
359 TIGR01189 ccmA heme ABC export 82.2 1.1 2.4E-05 46.6 3.1 27 252-278 24-50 (198)
360 cd03252 ABCC_Hemolysin The ABC 82.2 1 2.2E-05 48.2 2.9 27 252-278 26-52 (237)
361 cd03236 ABC_RNaseL_inhibitor_d 82.2 0.8 1.7E-05 50.0 2.2 32 252-283 24-55 (255)
362 TIGR03005 ectoine_ehuA ectoine 82.1 1 2.2E-05 48.7 3.0 27 252-278 24-50 (252)
363 cd03295 ABC_OpuCA_Osmoprotecti 82.1 1.1 2.3E-05 48.3 3.1 25 252-276 25-49 (242)
364 PRK14267 phosphate ABC transpo 82.1 1 2.2E-05 48.6 3.0 27 252-278 28-54 (253)
365 cd00046 DEXDc DEAD-like helica 82.1 1.3 2.8E-05 41.5 3.3 26 256-281 2-27 (144)
366 PRK11300 livG leucine/isoleuci 82.1 1.1 2.3E-05 48.5 3.1 27 252-278 29-55 (255)
367 PF06414 Zeta_toxin: Zeta toxi 82.0 1.2 2.6E-05 46.5 3.4 30 250-279 11-40 (199)
368 PRK00081 coaE dephospho-CoA ki 82.0 0.93 2E-05 47.3 2.5 50 255-304 3-57 (194)
369 cd03283 ABC_MutS-like MutS-lik 82.0 0.96 2.1E-05 47.5 2.6 22 254-275 25-46 (199)
370 PRK11174 cysteine/glutathione 82.0 0.74 1.6E-05 56.2 2.0 27 252-278 374-400 (588)
371 PRK10744 pstB phosphate transp 82.0 1 2.3E-05 49.0 3.0 27 252-278 37-63 (260)
372 TIGR02324 CP_lyasePhnL phospho 82.0 1.1 2.3E-05 47.5 3.0 27 252-278 32-58 (224)
373 PRK14273 phosphate ABC transpo 81.9 1.1 2.3E-05 48.6 3.0 27 252-278 31-57 (254)
374 PRK11264 putative amino-acid A 81.9 1.1 2.3E-05 48.4 3.1 27 252-278 27-53 (250)
375 PRK13657 cyclic beta-1,2-gluca 81.9 0.79 1.7E-05 56.0 2.2 29 252-280 359-387 (588)
376 cd03213 ABCG_EPDR ABCG transpo 81.9 1.1 2.4E-05 46.6 3.0 27 252-278 33-59 (194)
377 cd03246 ABCC_Protease_Secretio 81.9 1.1 2.5E-05 45.5 3.1 27 252-278 26-52 (173)
378 cd03233 ABC_PDR_domain1 The pl 81.9 1 2.2E-05 47.2 2.8 28 252-279 31-58 (202)
379 PRK06067 flagellar accessory p 81.9 1.7 3.7E-05 46.5 4.5 28 253-280 24-51 (234)
380 cd03216 ABC_Carb_Monos_I This 81.9 1.1 2.4E-05 45.3 2.9 27 252-278 24-50 (163)
381 cd03228 ABCC_MRP_Like The MRP 81.8 1.1 2.5E-05 45.4 3.0 27 252-278 26-52 (171)
382 COG1618 Predicted nucleotide k 81.8 1.3 2.7E-05 45.1 3.2 54 255-338 6-59 (179)
383 PRK07429 phosphoribulokinase; 81.8 1.1 2.3E-05 50.9 3.0 26 253-278 7-32 (327)
384 PRK10418 nikD nickel transport 81.8 1.1 2.3E-05 48.7 3.0 27 252-278 27-53 (254)
385 cd03231 ABC_CcmA_heme_exporter 81.8 1.1 2.4E-05 46.8 3.0 27 252-278 24-50 (201)
386 PRK10790 putative multidrug tr 81.7 0.81 1.8E-05 55.9 2.2 29 252-280 365-393 (592)
387 cd03244 ABCC_MRP_domain2 Domai 81.7 1.1 2.5E-05 47.2 3.0 27 252-278 28-54 (221)
388 cd03112 CobW_like The function 81.6 1 2.3E-05 45.4 2.6 21 257-277 3-23 (158)
389 PRK14240 phosphate transporter 81.6 1.1 2.4E-05 48.3 3.0 26 252-277 27-52 (250)
390 PRK05973 replicative DNA helic 81.6 1.7 3.7E-05 47.0 4.4 31 252-282 62-92 (237)
391 cd01394 radB RadB. The archaea 81.6 1.7 3.6E-05 45.9 4.3 37 245-281 8-46 (218)
392 PRK14733 coaE dephospho-CoA ki 81.6 1.4 3E-05 46.7 3.6 50 255-304 7-61 (204)
393 TIGR02204 MsbA_rel ABC transpo 81.6 0.97 2.1E-05 54.9 2.8 29 252-280 364-392 (576)
394 PRK10771 thiQ thiamine transpo 81.6 1.1 2.4E-05 47.8 2.9 26 252-277 23-48 (232)
395 PRK05439 pantothenate kinase; 81.6 2.2 4.8E-05 48.0 5.4 31 251-281 83-113 (311)
396 PRK13632 cbiO cobalt transport 81.5 1.1 2.4E-05 49.1 3.0 27 252-278 33-59 (271)
397 PRK14238 phosphate transporter 81.5 1.1 2.4E-05 49.2 3.0 28 252-279 48-75 (271)
398 PRK09544 znuC high-affinity zi 81.4 1.1 2.5E-05 48.6 3.1 27 252-278 28-54 (251)
399 PRK04328 hypothetical protein; 81.4 1.9 4E-05 46.9 4.7 35 245-279 12-48 (249)
400 TIGR03740 galliderm_ABC gallid 81.4 1.2 2.5E-05 47.3 3.1 27 252-278 24-50 (223)
401 PF12775 AAA_7: P-loop contain 81.4 2.4 5.2E-05 46.9 5.6 41 235-276 15-55 (272)
402 PRK13543 cytochrome c biogenes 81.4 1.2 2.5E-05 47.1 3.0 27 252-278 35-61 (214)
403 TIGR01288 nodI ATP-binding ABC 81.4 1.1 2.5E-05 50.0 3.1 27 252-278 28-54 (303)
404 PRK06921 hypothetical protein; 81.3 2.4 5.2E-05 46.7 5.5 28 253-280 116-143 (266)
405 PRK13646 cbiO cobalt transport 81.3 1.1 2.4E-05 49.6 2.9 27 252-278 31-57 (286)
406 TIGR02237 recomb_radB DNA repa 81.3 1.7 3.8E-05 45.4 4.3 29 253-281 11-39 (209)
407 cd04155 Arl3 Arl3 subfamily. 81.3 1.6 3.5E-05 43.6 3.9 31 245-275 5-35 (173)
408 cd03221 ABCF_EF-3 ABCF_EF-3 E 81.3 1.2 2.5E-05 44.2 2.8 27 252-278 24-50 (144)
409 PRK07952 DNA replication prote 81.3 1.8 3.9E-05 47.0 4.5 29 254-282 99-127 (244)
410 PRK13946 shikimate kinase; Pro 81.2 1.2 2.7E-05 45.9 3.0 26 253-278 9-34 (184)
411 PRK14269 phosphate ABC transpo 81.2 1.2 2.6E-05 48.1 3.0 26 252-277 26-51 (246)
412 PRK05642 DNA replication initi 81.2 2.5 5.4E-05 45.5 5.5 26 255-280 46-71 (234)
413 PRK14255 phosphate ABC transpo 81.2 1.2 2.5E-05 48.2 3.0 25 252-276 29-53 (252)
414 PF03215 Rad17: Rad17 cell cyc 81.2 1.8 4E-05 52.0 4.9 37 243-279 33-70 (519)
415 PRK01184 hypothetical protein; 81.1 1.1 2.5E-05 45.8 2.8 18 256-273 3-20 (184)
416 PRK13638 cbiO cobalt transport 81.1 1.1 2.4E-05 49.1 2.8 26 252-277 25-50 (271)
417 PRK14274 phosphate ABC transpo 81.1 1.2 2.6E-05 48.5 3.0 27 252-278 36-62 (259)
418 cd03249 ABC_MTABC3_MDL1_MDL2 M 81.1 1.2 2.5E-05 47.8 2.9 27 252-278 27-53 (238)
419 PRK14263 phosphate ABC transpo 81.1 1.2 2.6E-05 48.7 3.0 27 252-278 32-58 (261)
420 TIGR03877 thermo_KaiC_1 KaiC d 81.1 2.1 4.5E-05 46.1 4.8 27 253-279 20-46 (237)
421 cd03217 ABC_FeS_Assembly ABC-t 81.1 1.2 2.7E-05 46.5 3.0 26 252-277 24-49 (200)
422 COG4107 PhnK ABC-type phosphon 81.1 0.72 1.6E-05 47.2 1.2 27 254-280 32-58 (258)
423 PRK10619 histidine/lysine/argi 81.0 1.2 2.6E-05 48.4 3.0 27 252-278 29-55 (257)
424 PRK10575 iron-hydroxamate tran 81.0 1.1 2.4E-05 49.0 2.7 27 252-278 35-61 (265)
425 PTZ00112 origin recognition co 81.0 2.4 5.2E-05 53.4 5.8 38 244-281 770-808 (1164)
426 COG4778 PhnL ABC-type phosphon 80.9 1.2 2.6E-05 45.6 2.7 22 253-274 36-57 (235)
427 cd03369 ABCC_NFT1 Domain 2 of 80.9 1.2 2.7E-05 46.5 3.0 28 252-279 32-59 (207)
428 PRK07994 DNA polymerase III su 80.9 2 4.3E-05 53.0 5.1 54 224-281 7-65 (647)
429 TIGR03881 KaiC_arch_4 KaiC dom 80.9 2.1 4.6E-05 45.5 4.8 28 253-280 19-46 (229)
430 TIGR03771 anch_rpt_ABC anchore 80.8 1.2 2.7E-05 47.2 3.0 26 253-278 5-30 (223)
431 PRK14239 phosphate transporter 80.8 1.2 2.7E-05 48.0 3.0 25 252-276 29-53 (252)
432 TIGR03411 urea_trans_UrtD urea 80.8 1.3 2.7E-05 47.6 3.0 27 252-278 26-52 (242)
433 cd00879 Sar1 Sar1 subfamily. 80.7 2.3 5E-05 43.4 4.9 40 236-275 1-40 (190)
434 TIGR01188 drrA daunorubicin re 80.7 1.2 2.7E-05 49.7 3.1 27 252-278 17-43 (302)
435 PRK00625 shikimate kinase; Pro 80.7 1.4 3E-05 45.4 3.2 24 256-279 2-25 (173)
436 PRK14237 phosphate transporter 80.7 1.3 2.7E-05 48.6 3.1 27 252-278 44-70 (267)
437 PRK13548 hmuV hemin importer A 80.7 1.2 2.6E-05 48.5 2.9 27 252-278 26-52 (258)
438 PRK11701 phnK phosphonate C-P 80.7 1.2 2.6E-05 48.4 2.9 27 252-278 30-56 (258)
439 cd03248 ABCC_TAP TAP, the Tran 80.7 1.3 2.8E-05 47.0 3.0 27 252-278 38-64 (226)
440 KOG0942 E3 ubiquitin protein l 80.6 1.7 3.6E-05 54.0 4.3 37 883-919 18-54 (1001)
441 PRK14268 phosphate ABC transpo 80.6 1.3 2.7E-05 48.3 3.0 26 252-277 36-61 (258)
442 cd00267 ABC_ATPase ABC (ATP-bi 80.6 1.3 2.9E-05 44.1 3.0 25 252-276 23-47 (157)
443 PRK11144 modC molybdate transp 80.6 1.2 2.6E-05 51.0 3.0 25 252-276 22-46 (352)
444 PRK11831 putative ABC transpor 80.6 1.2 2.7E-05 48.7 3.0 26 252-277 31-56 (269)
445 cd01428 ADK Adenylate kinase ( 80.6 1.3 2.8E-05 45.5 3.0 22 257-278 2-23 (194)
446 TIGR00362 DnaA chromosomal rep 80.5 2.5 5.4E-05 49.3 5.6 27 255-281 137-163 (405)
447 PRK15056 manganese/iron transp 80.5 1.3 2.7E-05 48.8 3.0 27 252-278 31-57 (272)
448 PRK14270 phosphate ABC transpo 80.5 1.3 2.8E-05 47.9 3.0 27 252-278 28-54 (251)
449 PRK14493 putative bifunctional 80.4 1.5 3.3E-05 48.5 3.6 27 256-282 3-29 (274)
450 TIGR03878 thermo_KaiC_2 KaiC d 80.4 1.7 3.8E-05 47.5 4.0 29 253-281 35-63 (259)
451 cd03264 ABC_drug_resistance_li 80.4 1.2 2.6E-05 46.7 2.7 23 256-278 27-49 (211)
452 PRK05537 bifunctional sulfate 80.3 1.4 3E-05 53.7 3.5 44 235-280 375-418 (568)
453 PRK14949 DNA polymerase III su 80.3 2 4.4E-05 54.3 5.0 52 225-280 8-64 (944)
454 PRK14265 phosphate ABC transpo 80.3 1.3 2.8E-05 48.8 3.0 26 252-277 44-69 (274)
455 PRK08699 DNA polymerase III su 80.3 2.3 4.9E-05 48.3 5.0 39 243-281 8-48 (325)
456 TIGR01193 bacteriocin_ABC ABC- 80.3 1 2.2E-05 56.4 2.4 28 253-280 499-526 (708)
457 PRK00279 adk adenylate kinase; 80.2 1.4 3.1E-05 46.5 3.2 24 256-279 2-25 (215)
458 PRK05563 DNA polymerase III su 80.2 2.1 4.5E-05 52.1 5.0 45 234-281 21-65 (559)
459 KOG0924 mRNA splicing factor A 80.2 1.4 3E-05 53.3 3.2 120 251-374 368-503 (1042)
460 PRK13631 cbiO cobalt transport 80.1 1.3 2.8E-05 50.1 3.0 27 252-278 50-76 (320)
461 PRK13949 shikimate kinase; Pro 80.1 1.5 3.2E-05 44.9 3.1 24 256-279 3-26 (169)
462 PRK14241 phosphate transporter 80.1 1.3 2.9E-05 48.0 3.0 27 252-278 28-54 (258)
463 PF13177 DNA_pol3_delta2: DNA 80.1 2.9 6.2E-05 42.4 5.2 33 250-282 15-47 (162)
464 PRK13341 recombination factor 80.1 2 4.4E-05 53.8 4.9 45 234-279 33-77 (725)
465 PRK14259 phosphate ABC transpo 80.1 1.3 2.9E-05 48.5 3.0 26 252-277 37-62 (269)
466 PRK09984 phosphonate/organopho 80.0 1.3 2.9E-05 48.2 3.0 27 252-278 28-54 (262)
467 PRK12323 DNA polymerase III su 80.0 2.1 4.6E-05 52.5 4.9 52 225-280 8-64 (700)
468 TIGR01351 adk adenylate kinase 80.0 1.4 2.9E-05 46.5 2.9 22 257-278 2-23 (210)
469 PRK14262 phosphate ABC transpo 80.0 1.3 2.9E-05 47.7 3.0 27 252-278 27-53 (250)
470 PF13086 AAA_11: AAA domain; P 80.0 2 4.3E-05 44.8 4.2 34 243-278 8-41 (236)
471 TIGR00929 VirB4_CagE type IV s 80.0 1.7 3.7E-05 55.0 4.3 31 253-283 433-463 (785)
472 PRK14235 phosphate transporter 79.9 1.4 3E-05 48.3 3.1 27 252-278 43-69 (267)
473 PRK10895 lipopolysaccharide AB 79.9 1.4 3E-05 47.3 3.1 26 252-277 27-52 (241)
474 PRK14272 phosphate ABC transpo 79.9 1.4 3E-05 47.6 3.0 27 252-278 28-54 (252)
475 PRK14244 phosphate ABC transpo 79.9 1.4 3E-05 47.7 3.0 27 252-278 29-55 (251)
476 PRK09183 transposase/IS protei 79.9 1.6 3.5E-05 47.8 3.6 28 253-280 101-128 (259)
477 PRK10851 sulfate/thiosulfate t 79.8 1.3 2.9E-05 50.7 3.0 26 252-277 26-51 (353)
478 TIGR00382 clpX endopeptidase C 79.8 2.2 4.8E-05 49.9 4.8 25 254-278 116-140 (413)
479 PF06745 KaiC: KaiC; InterPro 79.8 1.7 3.6E-05 46.2 3.6 28 253-280 18-45 (226)
480 PRK14271 phosphate ABC transpo 79.8 1.4 3.1E-05 48.6 3.1 25 253-277 46-70 (276)
481 COG1474 CDC6 Cdc6-related prot 79.8 2.1 4.6E-05 49.3 4.6 40 244-283 32-71 (366)
482 PRK13547 hmuV hemin importer A 79.7 1.4 2.9E-05 48.7 2.9 27 252-278 25-51 (272)
483 KOG0056 Heavy metal exporter H 79.7 1.6 3.5E-05 51.1 3.5 32 253-284 563-594 (790)
484 PF13476 AAA_23: AAA domain; P 79.7 1.7 3.8E-05 44.3 3.6 27 254-280 19-45 (202)
485 PRK13649 cbiO cobalt transport 79.7 1.4 2.9E-05 48.6 2.9 27 252-278 31-57 (280)
486 PRK08451 DNA polymerase III su 79.7 2.3 5E-05 51.3 5.0 53 224-280 5-62 (535)
487 PRK03695 vitamin B12-transport 79.6 1.3 2.8E-05 47.9 2.7 26 252-277 20-45 (248)
488 TIGR00073 hypB hydrogenase acc 79.6 2.3 4.9E-05 44.7 4.5 34 246-279 14-47 (207)
489 PRK05707 DNA polymerase III su 79.6 2.5 5.5E-05 47.9 5.1 39 243-281 10-49 (328)
490 TIGR02769 nickel_nikE nickel i 79.6 1.4 3.1E-05 48.1 3.0 26 252-277 35-60 (265)
491 PRK14722 flhF flagellar biosyn 79.5 1.7 3.7E-05 50.1 3.7 28 253-280 136-163 (374)
492 cd03114 ArgK-like The function 79.5 1.9 4.1E-05 43.1 3.6 26 257-282 2-27 (148)
493 PRK15112 antimicrobial peptide 79.4 1.4 3.1E-05 48.2 3.0 27 252-278 37-63 (267)
494 COG1132 MdlB ABC-type multidru 79.4 1.1 2.4E-05 54.4 2.3 29 252-280 353-381 (567)
495 PRK14256 phosphate ABC transpo 79.4 1.5 3.2E-05 47.5 3.0 27 252-278 28-54 (252)
496 PRK14243 phosphate transporter 79.4 1.5 3.2E-05 48.0 3.0 27 252-278 34-60 (264)
497 PRK14952 DNA polymerase III su 79.3 2.2 4.8E-05 52.0 4.8 44 234-281 18-62 (584)
498 PRK14253 phosphate ABC transpo 79.2 1.5 3.3E-05 47.3 3.1 27 252-278 27-53 (249)
499 TIGR03797 NHPM_micro_ABC2 NHPM 79.2 1.1 2.3E-05 56.0 2.1 29 252-280 477-505 (686)
500 TIGR03819 heli_sec_ATPase heli 79.2 2 4.4E-05 49.0 4.2 32 246-279 172-203 (340)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.7e-210 Score=1872.12 Aligned_cols=791 Identities=44% Similarity=0.728 Sum_probs=727.4
Q ss_pred ccCcEEEEecCCCCeEEEEEEEEe--CCeeEEEc--CCCcEEEEeCCCcc--cCCCCcCCCccccccCcCCCchhHHHHH
Q 002395 117 KKKLQSWFQLPNGNWELGKILSIS--GTESVISL--PEGKVLKVKSENLV--SANPDILDGVDDLMQLSYLNEPSVLYNL 190 (928)
Q Consensus 117 ~~~~~vW~~~~~~~~~~~~v~~~~--~~~~~v~~--~~g~~~~v~~~~~~--~~n~~~~~~~~Dl~~L~~L~E~siL~~L 190 (928)
..|..||+|+.+..|..|.+.+.. ++.++... .+|....|+...+. ..+||.++++|||+.|++||||+|||||
T Consensus 7 ~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL 86 (1463)
T COG5022 7 EVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNL 86 (1463)
T ss_pred ccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHH
Confidence 467789999999999999999885 33332222 25555555555443 3447799999999999999999999999
Q ss_pred HHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChh
Q 002395 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKT 268 (928)
Q Consensus 191 ~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKT 268 (928)
++||.+|+||||+|-+|||||||+.+|||++++++.|+++... +|||||||+.||++|+..++|||||||||||||||
T Consensus 87 ~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKT 166 (1463)
T COG5022 87 EKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKT 166 (1463)
T ss_pred HHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCch
Confidence 9999999999999999999999999999999999999998876 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCC-----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCcee
Q 002395 269 ETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343 (928)
Q Consensus 269 e~~K~il~yLa~~~~~~-----~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsR 343 (928)
|+||.||+|||++++++ .||++||++||||||||||||+|||||||||||++|.||.+|.|+||+|++|||||||
T Consensus 167 e~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSR 246 (1463)
T COG5022 167 ENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSR 246 (1463)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhh
Confidence 99999999999998765 6899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHHHHHhhhcccChhHHHHHHHH
Q 002395 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM 423 (928)
Q Consensus 344 Vv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~I~~i 423 (928)
||+|+.+|||||||||||+|+++..++.+++..+.+|.||++++|..++|+||+++|+.|+.||++|||+.++|..||+|
T Consensus 247 VV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~i 326 (1463)
T COG5022 247 VVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKI 326 (1463)
T ss_pred hccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEEecCChhhHHHHHHHHHHHHH
Q 002395 424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY 503 (928)
Q Consensus 424 lAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~qA~~~RDalak~LY 503 (928)
||||||||||+|.... ++.+.+.+.+.++.+|.|||||++.|.++|+.|.|++|+|.|.+++|.+||..+||||||+||
T Consensus 327 LAaILhiGNIef~~~r-~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY 405 (1463)
T COG5022 327 LAAILHIGNIEFKEDR-NGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALY 405 (1463)
T ss_pred HHHHHhhcceeeeecc-cchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHH
Confidence 9999999999998644 356678888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHhcCCccccc
Q 002395 504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583 (928)
Q Consensus 504 ~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~Eq~ey~~EgI~~~~i 583 (928)
++||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+|||+|++|
T Consensus 406 ~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~I 484 (1463)
T COG5022 406 SNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFI 484 (1463)
T ss_pred HHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999987644 57899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHHhhc-CCCccccccccccCCCCCChHHHHHHHHHHhC--CCCCCcCCC--CCCeEEEecccceeEeccch
Q 002395 584 DFEDNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGF 658 (928)
Q Consensus 584 ~f~dN~~~ldli~~-kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gf 658 (928)
+|.|||+||||||+ .|.|||++|||||++|.|||++|..||.+.+. +++.|+++| ...|+|+||||+|+|+|+||
T Consensus 485 dy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ 564 (1463)
T COG5022 485 DYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGF 564 (1463)
T ss_pred ccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccch
Confidence 99999999999997 47999999999999999999999999999876 467788775 56899999999999999999
Q ss_pred hhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeE
Q 002395 659 LEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFI 737 (928)
Q Consensus 659 leKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfI 737 (928)
++||+|+++.++++||..|++++ ..+|....... .+.+++|+++.||+||.+||++|++|+||||
T Consensus 565 ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyI 630 (1463)
T COG5022 565 LDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYI 630 (1463)
T ss_pred hhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCcee
Confidence 99999999999999999999985 57886332111 1245699999999999999999999999999
Q ss_pred EeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccCC------CChHHHHHHHHH
Q 002395 738 RCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILH 811 (928)
Q Consensus 738 RCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~iL~ 811 (928)
||||||.+|+|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|..... .|.+.+|..||.
T Consensus 631 RCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~ 710 (1463)
T COG5022 631 RCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILE 710 (1463)
T ss_pred EeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999965332 256889999999
Q ss_pred HcCCCCcceEecceeeeeecccccccccccccccch-hHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 002395 812 QFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALV 890 (928)
Q Consensus 812 ~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~~~l~a-av~IQ~~~Rg~laRk~y~~lr~aav~IQs~~Rg~~aRk~~~~~ 890 (928)
...++...||+|+||||||.++++.||.+|...+.. ++.||++|||+..|++|....+.+..+|...+|++.|+....-
T Consensus 711 ~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~ 790 (1463)
T COG5022 711 ELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE 790 (1463)
T ss_pred hhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc
Confidence 999999999999999999999999999999988865 5789999999999999999999999999999999988766533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEe
Q 002395 891 LQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 924 (928)
Q Consensus 891 ~~~~~AAi~IQs~~Rg~~~Rr~y~~~r~aai~IQ 924 (928)
. .-++++.+|..||....|+.|+.....++.+|
T Consensus 791 ~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq 823 (1463)
T COG5022 791 L-KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823 (1463)
T ss_pred h-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHH
Confidence 2 34689999999999999999998877666555
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=8.8e-206 Score=1842.53 Aligned_cols=754 Identities=32% Similarity=0.535 Sum_probs=695.8
Q ss_pred cCcEEEE-------ecCCCCeEEEEEE-EEeCCeeEEEc---CCCcEEEEeCCCcccCCCCc-CCCccccccCcCCCchh
Q 002395 118 KKLQSWF-------QLPNGNWELGKIL-SISGTESVISL---PEGKVLKVKSENLVSANPDI-LDGVDDLMQLSYLNEPS 185 (928)
Q Consensus 118 ~~~~vW~-------~~~~~~~~~~~v~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~n~~~-~~~~~Dl~~L~~L~E~s 185 (928)
+|..||+ ++++..|..|+|+ +..++.++|.. ++|++++|+.+++.++||+. .++++||+.|++|||++
T Consensus 32 ~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~ 111 (821)
T PTZ00014 32 KGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPC 111 (821)
T ss_pred cCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHH
Confidence 4566776 6788999999999 88888888874 47999999999999999986 68899999999999999
Q ss_pred HHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCC---CCCchhHHHHHHHHHHHHcCceeEEEEeCC
Q 002395 186 VLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI---ESPHVYAITDTAIREMIRDEVNQSIIISGE 262 (928)
Q Consensus 186 iL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~---~~PHifaiA~~Ay~~m~~~~~~QsIiisGE 262 (928)
|||+|+.||.+++||||+|++|||||||+.+|+|++++++.|+++.. .||||||||+.||++|+.+++|||||||||
T Consensus 112 vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGE 191 (821)
T PTZ00014 112 VLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGE 191 (821)
T ss_pred HHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999998542 389999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeec
Q 002395 263 SGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (928)
Q Consensus 263 SGAGKTe~~K~il~yLa~~~~~~---~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLL 339 (928)
|||||||++|+||+|||.++++. .|+++|+++||||||||||||+|||||||||||++|+|+.+|.|+||+|++|||
T Consensus 192 SGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLL 271 (821)
T PTZ00014 192 SGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLL 271 (821)
T ss_pred CCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEec
Confidence 99999999999999999987643 699999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHHHHHhhhcccChhHHHH
Q 002395 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQES 419 (928)
Q Consensus 340 EKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~ 419 (928)
||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++ +|..++++||+++|++++.||++|||+++|+..
T Consensus 272 EKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~ 350 (821)
T PTZ00014 272 EKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGLSESQIED 350 (821)
T ss_pred cCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999995 588999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeeeEEecC---CCccccCC--hHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEEecCChhhHHHH
Q 002395 420 VFAMLAAVLWLGNVSFTVIDN---ENHVEPVA--DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDT 494 (928)
Q Consensus 420 I~~ilAaILhLGni~F~~~~~---~~~~~~~~--~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~l~~~qA~~~ 494 (928)
||+|||||||||||+|...+. ++.+.+.+ .+.++.||+|||||+++|.++|+++++.+|+|.++++++++||.++
T Consensus 351 If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~ 430 (821)
T PTZ00014 351 IFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEML 430 (821)
T ss_pred HHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHH
Confidence 999999999999999986532 23444444 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHHhhhhHHHHHHH
Q 002395 495 RDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYI 574 (928)
Q Consensus 495 RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~Eq~ey~ 574 (928)
||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||||||+||+++|+.||+||.
T Consensus 431 rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~ 509 (821)
T PTZ00014 431 KDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYK 509 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754 346799999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC---CCCeEEEecccce
Q 002395 575 QDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEV 651 (928)
Q Consensus 575 ~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~~---~~~F~I~HyaG~V 651 (928)
+|||+|..|+|.||++|||||++||.|||++|||||++|++||++|++||++++++|++|.+++ ...|+|+||||+|
T Consensus 510 ~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V 589 (821)
T PTZ00014 510 DEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDI 589 (821)
T ss_pred HccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceee
Confidence 9999999999999999999999999999999999999999999999999999999999998764 5799999999999
Q ss_pred eEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHh
Q 002395 652 IYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLE 730 (928)
Q Consensus 652 ~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~ 730 (928)
+|+++||++||+|.|+++++++|++|++++ ..+|...... ++...+..||+++|+.||++||++|+
T Consensus 590 ~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~-------------~~~~~k~~tv~s~Fk~qL~~Lm~~L~ 656 (821)
T PTZ00014 590 QYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVE-------------KGKLAKGQLIGSQFLNQLDSLMSLIN 656 (821)
T ss_pred eeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccc-------------cccccCCCcHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999886 4677532211 01122347999999999999999999
Q ss_pred ccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccC--CCChHHHHHH
Q 002395 731 STTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVA 808 (928)
Q Consensus 731 ~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~ 808 (928)
+|+||||||||||+.|+|+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|.+...+ ..|+++.|+.
T Consensus 657 ~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~ 736 (821)
T PTZ00014 657 STEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEK 736 (821)
T ss_pred ccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887654 3488999999
Q ss_pred HHHHcCCCCcceEecceeeeeecccccccccccccccc----hhHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhHHHH
Q 002395 809 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH----GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIR 884 (928)
Q Consensus 809 iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~~~l~----aav~IQ~~~Rg~laRk~y~~lr~aav~IQs~~Rg~~aR 884 (928)
||+.+++++++|++|+||||||.+++..||..|...+. .+..||++||||++|++|++++.++++||++||+++.+
T Consensus 737 il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 737 LLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987765543 35578888888888888888888888888888888777
Q ss_pred HH
Q 002395 885 KE 886 (928)
Q Consensus 885 k~ 886 (928)
+.
T Consensus 817 ~~ 818 (821)
T PTZ00014 817 AE 818 (821)
T ss_pred hc
Confidence 64
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.6e-194 Score=1724.86 Aligned_cols=677 Identities=86% Similarity=1.321 Sum_probs=646.0
Q ss_pred cCCCCcCCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHH
Q 002395 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITD 242 (928)
Q Consensus 163 ~~n~~~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~~PHifaiA~ 242 (928)
|+||+.++++|||+.|++|||++||++|+.||.+++||||+|++|||||||+.+|+|++++++.|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEE
Q 002395 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322 (928)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~ 322 (928)
+||+.|..+++||||||||||||||||++|+||+||+.+++++.++++|+++||||||||||||++||||||||||++|+
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~ 160 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIH 160 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEE
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHH
Q 002395 323 FSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402 (928)
Q Consensus 323 F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 402 (928)
||.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++
T Consensus 161 f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~ 240 (677)
T cd01383 161 FSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHT 240 (677)
T ss_pred ECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceE
Q 002395 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 482 (928)
Q Consensus 403 ~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~ 482 (928)
++.||+.|||+++|+..||+|||||||||||+|...++++.+++.+.+.++.||+||||++++|.++|+++++.++++.+
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 320 (677)
T cd01383 241 LVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNI 320 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceE
Confidence 99999999999999999999999999999999998776666778888999999999999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHH
Q 002395 483 VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFN 562 (928)
Q Consensus 483 ~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~ 562 (928)
.++++++||.++||||||+||++||+|||.+||.+|.++......+||||||||||+|+.||||||||||||||||++|+
T Consensus 321 ~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 400 (677)
T cd01383 321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFN 400 (677)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765567899999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCCCCCe
Q 002395 563 RHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSF 642 (928)
Q Consensus 563 ~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~~~~~F 642 (928)
+++|+.||++|++|||+|..|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.++++..|
T Consensus 401 ~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F 480 (677)
T cd01383 401 RHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGAF 480 (677)
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred EEEecccceeEeccchhhhccccchHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHH
Q 002395 643 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQL 722 (928)
Q Consensus 643 ~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL 722 (928)
+|+||||+|+|+++||++||||.++++++++|++|++++.++|......++ +..++..+.++...+..||+++||.||
T Consensus 481 ~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s--~~~~~~~~~~~~~~~~~tv~~~fk~qL 558 (677)
T cd01383 481 TVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQS--PVVGPLYVASAADSQKLSVGTKFKGQL 558 (677)
T ss_pred EEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccc--cccccccccccccccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999889965543222 111222222233456789999999999
Q ss_pred HHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccCCCCh
Q 002395 723 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 802 (928)
Q Consensus 723 ~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 802 (928)
++||++|++|+||||||||||+.|+|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++..+...|+
T Consensus 559 ~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~ 638 (677)
T cd01383 559 FKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDP 638 (677)
T ss_pred HHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777789
Q ss_pred HHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 803 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 803 ~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
+..|+.||+.+++++++|++|+||||||.++++.||+.|
T Consensus 639 ~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 639 LSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999999999999999999999999876
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.2e-189 Score=1681.46 Aligned_cols=659 Identities=43% Similarity=0.734 Sum_probs=623.5
Q ss_pred CccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002395 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (928)
Q Consensus 171 ~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m 248 (928)
+||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|+++.++.|+++... |||||+||++||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654 899999999999999
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCC
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETG 327 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~-~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~g 327 (928)
+++++||||||||||||||||++|++|+||+.+++.. .++++|+++||||||||||||++||||||||||++|+|+.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 9999999999999999999999999999999998754 799999999999999999999999999999999999999999
Q ss_pred CeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHHHHHh
Q 002395 328 KISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEAL 407 (928)
Q Consensus 328 ~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 407 (928)
.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHhhcCeeeEEecC--CCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEEec
Q 002395 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQN 485 (928)
Q Consensus 408 ~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~ 485 (928)
+.|||+++++..||+|||||||||||+|...+. .+.+++.+.+.++.||+||||++++|.++||++++.+++|.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999987642 346788999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHHhh
Q 002395 486 LTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHL 565 (928)
Q Consensus 486 l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~ 565 (928)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.||||||||||||||||++||+++
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986534567899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC---CCCe
Q 002395 566 FKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSF 642 (928)
Q Consensus 566 f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~~---~~~F 642 (928)
|+.||++|.+|||+|..|+|.||++|||||++||.|||++|||||++|++||++|++||++++++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997543 5799
Q ss_pred EEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHH
Q 002395 643 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQ 721 (928)
Q Consensus 643 ~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~q 721 (928)
+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... +.+...+..||+++|+.|
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~------------~~~~~~k~~tv~~~fk~q 548 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEM------------GAETRKKKPTLSSQFRRS 548 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccc------------cccccccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999886 4577543210 001223458999999999
Q ss_pred HHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccC---
Q 002395 722 LFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--- 798 (928)
Q Consensus 722 L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--- 798 (928)
|+.||++|++|+||||||||||+.|+|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|++..++
T Consensus 549 L~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~ 628 (671)
T cd01381 549 LDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYK 628 (671)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCChHHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 799 SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 799 ~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
..++++.|+.|++.+.+++++|++|+||||||.+.+..||+.|
T Consensus 629 ~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 629 QDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 3467889999999999999999999999999999999999876
No 5
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=5.7e-189 Score=1685.27 Aligned_cols=671 Identities=47% Similarity=0.759 Sum_probs=625.3
Q ss_pred CCcCCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHH
Q 002395 166 PDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDT 243 (928)
Q Consensus 166 ~~~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~ 243 (928)
||.++++|||+.|++|||++||++|+.||.+|+||||+|+||||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999987654 8999999999
Q ss_pred HHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC-----------CchhhhhhhhHHHHhhcCcccCCCCCC
Q 002395 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----------GIEYEILKTNPILEAFGNAKTSRNDNS 312 (928)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~-----------~i~~~il~snpiLEAFGNAkT~rN~NS 312 (928)
||++|..+++||||||||||||||||++|+||+||+.+++++ .|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999997642 689999999999999999999999999
Q ss_pred CCcccEEEEEEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCc-ccCccccCCCcccc
Q 002395 313 SRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSA-KEYKYLRQSSCYSI 391 (928)
Q Consensus 313 SRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~-~~y~yL~~~~~~~~ 391 (928)
||||||++|+|+.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999875 99999999876 47
Q ss_pred CCcchHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhc
Q 002395 392 NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALS 471 (928)
Q Consensus 392 ~~~dD~~~f~~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~ 471 (928)
+++||+++|++++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987666778899999999999999999999999999
Q ss_pred ceeeeecCceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHH
Q 002395 472 TRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (928)
Q Consensus 472 ~r~~~~~~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcIN 551 (928)
++++.++++.+.++++++||.++||+|||+||++||+|||++||.+|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34578999999999999999999999999
Q ss_pred HhhHHHHHHHHHhhhhHHHHHHHhcCCcccccccC-ChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCC
Q 002395 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNS 630 (928)
Q Consensus 552 yaNEkLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~-dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~ 630 (928)
|||||||++|++++|+.||++|++|||+|..|+|. ||++|||||+++|.|||++|||||++|++||++|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999998
Q ss_pred CCCCcC--C--CCCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCC
Q 002395 631 NPCFRG--E--RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAG 705 (928)
Q Consensus 631 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~ 705 (928)
+++|.. + .+..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+. ..++ ...+
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~--~~~~-~~~~ 555 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD--GGGG-GGKK 555 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc--cccc-cCCC
Confidence 888732 2 25789999999999999999999999999999999999999886 4577543211100 0011 1111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHH
Q 002395 706 GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 785 (928)
Q Consensus 706 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF 785 (928)
...++..||+++|+.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|++|
T Consensus 556 ~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F 635 (693)
T cd01377 556 KKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEF 635 (693)
T ss_pred CcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHH
Confidence 12234579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccC--CCChHHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 786 ARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 786 ~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
++||++|++..++ ..|+++.|+.||+.+++++.+|++|+||||||.+++..||.+|
T Consensus 636 ~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 636 RQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999998753 3578999999999999999999999999999999999999876
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5.1e-189 Score=1685.24 Aligned_cols=670 Identities=49% Similarity=0.817 Sum_probs=622.8
Q ss_pred CccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002395 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (928)
Q Consensus 171 ~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m 248 (928)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|++++++.|+++... |||||+||++||++|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988765 899999999999999
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC-------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~-------~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 321 (928)
+++++||||||||||||||||++|+||+||+.++++. .|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998642 799999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHH
Q 002395 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (928)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (928)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCce
Q 002395 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT 481 (928)
Q Consensus 402 ~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~ 481 (928)
+++.||+.|||+++|+..||+|||||||||||+|...++++.....+.+.++.||+||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766544334456778999999999999999999999999999999
Q ss_pred EEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHH
Q 002395 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK--RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQ 559 (928)
Q Consensus 482 ~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~--~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~ 559 (928)
++++++++||.++||||||+||++||+|||++||++|.+.. .....+||||||||||+|+.||||||||||||||||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998763 3456799999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhC--CCCCCcCC
Q 002395 560 HFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGE 637 (928)
Q Consensus 560 ~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~--~~~~f~~~ 637 (928)
+||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|++||++|++||+++++ +|++|.++
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 78999776
Q ss_pred C--CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCc---cC-CCccCCCCCCC
Q 002395 638 R--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPV---VG-PLYKAGGADSQ 710 (928)
Q Consensus 638 ~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~---~~-~~~~~~~~~~~ 710 (928)
+ ...|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+.... .. .....++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 5 5789999999999999999999999999999999999999886 5677543311110000 00 00111223445
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHh
Q 002395 711 KLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYG 790 (928)
Q Consensus 711 ~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~ 790 (928)
.+||+++|+.||+.||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|++|++||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-CCCChHHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 791 FLLLESV-ASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 791 ~L~~~~~-~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
+|++... ...|+++.|+.||+.+..++.+|++|+||||||.+++..||+.|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999876 35688999999999998888999999999999999999999876
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=3.3e-188 Score=1669.91 Aligned_cols=658 Identities=48% Similarity=0.820 Sum_probs=618.8
Q ss_pred CCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 002395 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (928)
Q Consensus 170 ~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~ 246 (928)
++||||+.|++|||++|||+|+.||.+++||||+|++|||||||+++| +|++++++.|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999 9999999999988765 8999999999999
Q ss_pred HHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC-----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002395 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (928)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~-----~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 321 (928)
+|.++++||||||||||||||||++|++|+||+.++++. .|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997532 699999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHH
Q 002395 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (928)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (928)
+|+.+|.|+||+|++||||||||++|++||||||||||||+| ++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccC---ChHHHHHHHHhhCCCHHHHHHhhcceeeeec
Q 002395 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPV---ADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (928)
Q Consensus 402 ~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~ 478 (928)
+++.||+.|||+++++..||+|||||||||||+|...++.+.+.+. +.+.++.||+||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 9999999999999999999999999999999999876544444443 3589999999999999999999999999999
Q ss_pred CceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHH
Q 002395 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (928)
Q Consensus 479 ~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ 558 (928)
+|.+.++++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34689999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC
Q 002395 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER 638 (928)
Q Consensus 559 ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~~ 638 (928)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.+++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 002395 639 --DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 715 (928)
Q Consensus 639 --~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~ 715 (928)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... .+..++..||+
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-------------~~~~~k~~tv~ 545 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEE-------------TSKSSKFSSIG 545 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccc-------------cccccccccHH
Confidence 5799999999999999999999999999999999999999886 5577543210 01223457999
Q ss_pred HHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhccccc
Q 002395 716 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 795 (928)
Q Consensus 716 ~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 795 (928)
++||.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|++.
T Consensus 546 ~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 625 (674)
T cd01384 546 SRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPE 625 (674)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC-CCChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccccc
Q 002395 796 SVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 844 (928)
Q Consensus 796 ~~~-~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~~~ 844 (928)
..+ ..+.+..|+.||+.+++ ++|++|+||||||.+++..||..|.+.
T Consensus 626 ~~~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 626 VLKGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cccCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 654 34678999999998765 579999999999999999999998764
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.3e-187 Score=1669.16 Aligned_cols=656 Identities=45% Similarity=0.735 Sum_probs=620.5
Q ss_pred CccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002395 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (928)
Q Consensus 171 ~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m 248 (928)
|||||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||++||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999998764 899999999999999
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEc
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~----~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~ 324 (928)
+.+++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998754 589999999999999999999999999999999999999
Q ss_pred CCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHHH
Q 002395 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVV 404 (928)
Q Consensus 325 ~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~ 404 (928)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecC----c
Q 002395 405 EALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN----D 480 (928)
Q Consensus 405 ~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~----e 480 (928)
+||+.|||+++++..||+|||||||||||+|...+++ .+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 9999999999999999999999999999999875543 3678899999999999999999999999999999998 9
Q ss_pred eEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHH
Q 002395 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (928)
Q Consensus 481 ~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~ 560 (928)
.++++++++||.++||+|||+||++||+|||.+||++|.+.......+||||||||||+|+.||||||||||||||||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445678999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhc-CCCccccccccccCCC-CCChHHHHHHHHHHhCCCCCCcCC-
Q 002395 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFP-NGTDLTFANKLKQHLNSNPCFRGE- 637 (928)
Q Consensus 561 f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~-kp~Gil~lLDEe~~~p-~~tD~~fl~kl~~~~~~~~~f~~~- 637 (928)
||+++|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++++++|+++..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999886543
Q ss_pred -CCCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcchh-HHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 002395 638 -RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 715 (928)
Q Consensus 638 -~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~ 715 (928)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....... ...+..||+
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~--------------~~~~~~tv~ 545 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDAD--------------SKKRPTTAG 545 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccccc--------------ccCCCCcHH
Confidence 367999999999999999999999999999999999999998864 5775321100 112347999
Q ss_pred HHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhccccc
Q 002395 716 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 795 (928)
Q Consensus 716 ~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 795 (928)
++||.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++.
T Consensus 546 ~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 625 (674)
T cd01378 546 FKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPK 625 (674)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccC--CCChHHHHHHHHHHcCCCCcceEecceeeeeecc-ccccccccc
Q 002395 796 SVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 841 (928)
Q Consensus 796 ~~~--~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g-~l~~LE~~R 841 (928)
..+ ..|+++.|+.||..+++++++|++|+||||||.+ ++..||.+|
T Consensus 626 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 626 TWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 543 4588999999999999999999999999999997 689999876
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.4e-186 Score=1658.77 Aligned_cols=667 Identities=42% Similarity=0.724 Sum_probs=617.3
Q ss_pred CCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHH
Q 002395 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247 (928)
Q Consensus 170 ~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~ 247 (928)
++||||+.|++|||++||++|+.||.+|+||||+|++|||||||+.+|+|+++.++.|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987654 89999999999999
Q ss_pred HHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC--CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcC
Q 002395 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE 325 (928)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~--~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~ 325 (928)
|+.+++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 99999999999999999999999999999999987543 689999999999999999999999999999999999995
Q ss_pred CCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHHHH
Q 002395 326 TGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVE 405 (928)
Q Consensus 326 ~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~ 405 (928)
+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|+.++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecC--CCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEE
Q 002395 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (928)
Q Consensus 406 al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~ 483 (928)
||+.|||+++|+..||+|||||||||||+|...+. .+.+++.+++.++.||+||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987542 2346788899999999999999999999999999999999999
Q ss_pred ecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHH
Q 002395 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (928)
Q Consensus 484 ~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 563 (928)
++++++||.++||+|||+||++||+|||++||.+|.+. ....+||||||||||+|+.||||||||||||||||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874 3467999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC--CCC
Q 002395 564 HLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKS 641 (928)
Q Consensus 564 ~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~~--~~~ 641 (928)
++|+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|++||++|++|++..+++|++|.+++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred eEEEecccceeEeccchhhhccccchHHHHHHHhhcCcchh-HHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 002395 642 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 720 (928)
Q Consensus 642 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~ 720 (928)
|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.......+.+. .+...+++...+.+||+++|+.
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~--~~~~s~~~~~~~~~tv~~~f~~ 555 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKR--LGKSSSGTRLYKAHTVAAKFQQ 555 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhccccccc--ccCCCccccccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999998865 56654321111110 0001111223345799999999
Q ss_pred HHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccCCC
Q 002395 721 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 800 (928)
Q Consensus 721 qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~ 800 (928)
||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|++|++||++|++......
T Consensus 556 sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~ 635 (677)
T cd01387 556 SLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARP 635 (677)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765444
Q ss_pred ChHHH-HHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 801 DPLSV-SVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 801 d~~~~-~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
++.+. +..+++.+++++++|++|+||||||.+.+..||..|
T Consensus 636 ~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 636 APGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred CcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44444 467888889999999999999999999999999876
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=4.2e-186 Score=1658.04 Aligned_cols=668 Identities=40% Similarity=0.677 Sum_probs=618.4
Q ss_pred CCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCC-C--CCCchhHHHHHHH
Q 002395 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKS-I--ESPHVYAITDTAI 245 (928)
Q Consensus 169 ~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~-~--~~PHifaiA~~Ay 245 (928)
.+++|||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++. . .|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999998876 2 3899999999999
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCC----CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG----SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~----~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 321 (928)
++|+++++||||||||||||||||++|+||+||+.+++. ++++++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998752 3799999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHH
Q 002395 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (928)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (928)
+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++++|.++.+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999887778999999999
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecC---CCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeec
Q 002395 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (928)
Q Consensus 402 ~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~ 478 (928)
+++.||+.|||+++++..||+|||||||||||+|...++ ++.+.+.+.+.++.||.||||++++|.++|+++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 999999999999999999999999999999999987532 34677889999999999999999999999999999999
Q ss_pred CceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC--CCCceeeeccCCCCcCCCC-CCHHHHHHHHhhH
Q 002395 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR--RTGRSISILDIYGFESFDR-NSFEQFCINYANE 555 (928)
Q Consensus 479 ~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~--~~~~~IgILDifGFE~f~~-NsfEQLcINyaNE 555 (928)
||.++++++++||.++||+|||+||++||+|||++||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999987542 2457999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCc
Q 002395 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFR 635 (928)
Q Consensus 556 kLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~ 635 (928)
|||++|++++|+.||++|.+|||+|..|+|.||++|||||++||.|||++|||||++|++||++|++|+++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC--CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCc
Q 002395 636 GER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKL 712 (928)
Q Consensus 636 ~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~ 712 (928)
+++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|++++ ..+|.......... ...++..+.....
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~----~~~~~~~~~~~~~ 561 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRW----AVLRAAFRAMAAP 561 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccc----ccccccccCccCC
Confidence 653 5789999999999999999999999999999999999999986 45775322111000 0011111122347
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcc
Q 002395 713 SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFL 792 (928)
Q Consensus 713 tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L 792 (928)
||+++|+.||++||++|++|+||||||||||+.++|+.||..+|++||||+||||++||+|.|||+|++|.+|++||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccc
Q 002395 793 LLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 842 (928)
Q Consensus 793 ~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~ 842 (928)
+|.... ..++.|+.||+.+++++++|++|+||||||.+.+..||+...
T Consensus 642 ~~~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 642 LPKGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred Cccccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 986532 345679999999999999999999999999999999987543
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.6e-187 Score=1558.39 Aligned_cols=720 Identities=38% Similarity=0.635 Sum_probs=663.6
Q ss_pred CCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 002395 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (928)
Q Consensus 169 ~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~ 246 (928)
--||+|++-|+.++|++++.|||.||.++.||||+|++||+||||+.++||++++++.|++.... |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998865 8999999999999
Q ss_pred HHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEE
Q 002395 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (928)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~------~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~ 320 (928)
.|.+.++||||+|||||||||||++|+||+|+|++.+.+ .+.+.+|+|||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999998654 46788999999999999999999999999999999
Q ss_pred EEEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccC-CCcccCccccCCCccccCCcchHHH
Q 002395 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSINGVDDAEQ 399 (928)
Q Consensus 321 l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 399 (928)
|+||-+|..+|+.|.+|||||||||.|.+||||||||||||.|+++++..+|+| +++..|.||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 579999999998 788999999999
Q ss_pred HHHHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecC
Q 002395 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN 479 (928)
Q Consensus 400 f~~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~ 479 (928)
|+.+.+||.++||+++|++++|+|+|||||||||+|...+++ .-+.+...+..+|+||+++.++|.++|++|+|.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed~--~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNEDS--SGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCcc--cccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999865443 334455889999999999999999999999999999
Q ss_pred ceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC----CCCceeeeccCCCCcCCCCCCHHHHHHHHhhH
Q 002395 480 DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (928)
Q Consensus 480 e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~----~~~~~IgILDifGFE~f~~NsfEQLcINyaNE 555 (928)
|.+.++++++||.++||||||++|+|||.|||.+||++|..... .....||+|||||||+|+.|||||||||||||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987532 22468999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCC-CChHHHHHHHHHHhCCCCCC
Q 002395 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPN-GTDLTFANKLKQHLNSNPCF 634 (928)
Q Consensus 556 kLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~-~tD~~fl~kl~~~~~~~~~f 634 (928)
||||.|++-+++.|||||++|||+|+.|+|.+|+-++||+|.+..||+++|||||..|+ .||.+|+++|.+++++|+||
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999885 79999999999999999999
Q ss_pred cCCC---------CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccC
Q 002395 635 RGER---------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKA 704 (928)
Q Consensus 635 ~~~~---------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~ 704 (928)
.+.. -.+|.|.||||+|+|+|+||++||+|.|..|+..+|.+|++++ ..+|+........
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~---------- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAE---------- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHh----------
Confidence 6421 2689999999999999999999999999999999999999985 5677533211100
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHH
Q 002395 705 GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQK 784 (928)
Q Consensus 705 ~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~e 784 (928)
...+..|++++||.++..||+.|.+-+|+||||||||+.|.|+.||.+.|.+|.+|+|+||.+|++|+||.+|.+|+.
T Consensus 554 --~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~ 631 (1001)
T KOG0164|consen 554 --VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYER 631 (1001)
T ss_pred --hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHH
Confidence 012448999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCC---ChHHHHHHHHHHcCCCCcceEecceeeeeecc-cccccccccccccch-hHHHHHHHhhhh
Q 002395 785 FARRYGFLLLESVASQ---DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHG-ILRVQSCFRGHQ 859 (928)
Q Consensus 785 F~~RY~~L~~~~~~~~---d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g-~l~~LE~~R~~~l~a-av~IQ~~~Rg~l 859 (928)
|+.||+++++.+||.+ +.++.|..|++..++. +++.+|+||||+|++ .+..||++|..++.. ++.||++||||+
T Consensus 632 FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~ 710 (1001)
T KOG0164|consen 632 FLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWL 710 (1001)
T ss_pred HHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999854 4578888999998886 889999999999997 488999999888866 468999999999
Q ss_pred hhHhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002395 860 ARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 915 (928)
Q Consensus 860 aRk~y~~lr~aav~IQs~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~ 915 (928)
+|.+|++++++++.|+ +||.++. +.++..||+.+||+..++.|.+
T Consensus 711 ~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 711 ARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhccccCC
Confidence 9999999999999999 8874432 2456678888888888877754
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=4e-185 Score=1655.10 Aligned_cols=663 Identities=39% Similarity=0.661 Sum_probs=614.1
Q ss_pred CCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 002395 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (928)
Q Consensus 169 ~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay 245 (928)
.++||||+.|++|||++||++|+.||.+++||||+|++|||||||+++| +|+++.++.|+++... |||||+||++||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 9999999999988765 899999999999
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCC-CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEc
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~-~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~ 324 (928)
++|+++++||||||||||||||||++|+||+||+.++++ ..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 999999999999999999999999999999999998754 4899999999999999999999999999999999999999
Q ss_pred CCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCC-----------------
Q 002395 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS----------------- 387 (928)
Q Consensus 325 ~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~----------------- 387 (928)
.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ---------ccccCCcchHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCC-Ccc--ccCChHHHHHH
Q 002395 388 ---------CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE-NHV--EPVADEGLITV 455 (928)
Q Consensus 388 ---------~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~-~~~--~~~~~~~l~~~ 455 (928)
|..++++||+++|++++.||++|||+++++..||+|||||||||||+|...+++ +.+ ...+.+.++.|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 224577899999999999999999999999999999999999999999875432 223 33467899999
Q ss_pred HHhhCCCHHHHHHhhcceeee-----ecCceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceee
Q 002395 456 AKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530 (928)
Q Consensus 456 a~LLgv~~~~L~~~L~~r~~~-----~~~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~Ig 530 (928)
|+||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||++||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999998 7889999999999999999999999999999999999999998643 467999
Q ss_pred eccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCcccccccccc
Q 002395 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEES 610 (928)
Q Consensus 531 ILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~ 610 (928)
||||||||+|+.||||||||||||||||++|++++|..||++|++|||+|+.|+|.||++|||||++||.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCCCCCcCCC------------CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcC
Q 002395 611 TFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCS 678 (928)
Q Consensus 611 ~~p~~tD~~fl~kl~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~ 678 (928)
++|++||++|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999998888775432 2579999999999999999999999999999999999999
Q ss_pred cchh-HHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchh
Q 002395 679 CHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVL 757 (928)
Q Consensus 679 ~~l~-~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~ 757 (928)
++++ .+|........ ...+....+..||+++||.||++||++|++|+||||||||||+.++|+.||.++|+
T Consensus 561 n~~i~~lf~~~~~~~~--------~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~ 632 (717)
T cd01382 561 DKFLRSLFESSTNNND--------TKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQIL 632 (717)
T ss_pred hHHHHHHhcccccccc--------ccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHH
Confidence 8864 57754321100 00011123457999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccCCCChHHHHHHHHHHcCCCCcceEecceeeeeeccccccc
Q 002395 758 QQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGML 837 (928)
Q Consensus 758 ~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~L 837 (928)
+||||+||||+|||+|.|||+|++|.+|++||+.|++......|++..|+.||+.+++++++|++|+||||||.++++.|
T Consensus 633 ~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~l 712 (717)
T cd01382 633 SQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEF 712 (717)
T ss_pred HHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHH
Confidence 99999999999999999999999999999999999988776678999999999999999999999999999999999999
Q ss_pred cccc
Q 002395 838 EDTR 841 (928)
Q Consensus 838 E~~R 841 (928)
|+..
T Consensus 713 e~~~ 716 (717)
T cd01382 713 DQIM 716 (717)
T ss_pred HHHh
Confidence 8753
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=6.4e-183 Score=1635.16 Aligned_cols=664 Identities=53% Similarity=0.870 Sum_probs=628.4
Q ss_pred CCCcCCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHH
Q 002395 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (928)
Q Consensus 165 n~~~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~ 242 (928)
||+..++++||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999999988654 899999999
Q ss_pred HHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccE
Q 002395 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318 (928)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~----~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~ 318 (928)
+||+.|+.+++||||||||||||||||++|++|+||+.++++. +|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 9999999999999999999999999999999999999998653 799999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHH
Q 002395 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAE 398 (928)
Q Consensus 319 i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 398 (928)
++|+|+.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCc-cccCChHHHHHHHHhhCCCHHHHHHhhcceeeee
Q 002395 399 QFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH-VEPVADEGLITVAKLIGCDIGELKLALSTRKMRV 477 (928)
Q Consensus 399 ~f~~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~-~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 477 (928)
+|++++.||+.|||+++|+..||+|||||||||||+|...++++. ..+.+.+.++.||+||||+.++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999987654332 3478899999999999999999999999999999
Q ss_pred cCceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHH
Q 002395 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (928)
Q Consensus 478 ~~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkL 557 (928)
++|.++++++++||.++||+|||+||++||+|||.+||++|.+.. ....+||||||||||+|+.|||||||||||||||
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998753 4578999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC
Q 002395 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 637 (928)
Q Consensus 558 Q~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~ 637 (928)
|++|++++|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.++
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C---CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCcc
Q 002395 638 R---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLS 713 (928)
Q Consensus 638 ~---~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~t 713 (928)
+ +..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... .+...+.+|
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-------------~~~~~~~~t 546 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESN-------------AGSKKRFRT 546 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhcccccc-------------ccccCCCCc
Confidence 3 6789999999999999999999999999999999999999986 4577543211 011234589
Q ss_pred HHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhccc
Q 002395 714 VATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLL 793 (928)
Q Consensus 714 v~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~ 793 (928)
|+++|+.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||++||+|.|||+|++|.+|++||++|+
T Consensus 547 v~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~ 626 (677)
T smart00242 547 VGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLL 626 (677)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC--CChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccc
Q 002395 794 LESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 842 (928)
Q Consensus 794 ~~~~~~--~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~ 842 (928)
+..++. .|+++.|+.||+.++++..+|++|+||||||.+++..||+.|+
T Consensus 627 ~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 627 PDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 976553 3579999999999999999999999999999999999998874
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.4e-182 Score=1613.20 Aligned_cols=634 Identities=39% Similarity=0.684 Sum_probs=595.7
Q ss_pred CccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002395 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (928)
Q Consensus 171 ~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m 248 (928)
++|||+.|++|||++||++|+.||.+|+||||+|++|||||||+.+|+|++++++.|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999887554 899999999999999
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC--CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~--~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~ 326 (928)
+..++||||||||||||||||++|++|+||+.++++. .++++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999999987543 79999999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhH-hhccCCCcccCccccCCCccccCCcc----hHHHHH
Q 002395 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALR-EKLNLMSAKEYKYLRQSSCYSINGVD----DAEQFR 401 (928)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 401 (928)
|+|+||+|++||||||||++|++||||||||||||+|++++++ ++|+|.++.+|+||++++|..+++++ |+++|+
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999999999999999887666654 578999
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecC---CCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeec
Q 002395 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (928)
Q Consensus 402 ~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~ 478 (928)
+++.||++|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.++.||+||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 23567889999999999999999999999999999999
Q ss_pred CceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC----CCCceeeeccCCCCcCCCCCCHHHHHHHHhh
Q 002395 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYAN 554 (928)
Q Consensus 479 ~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~----~~~~~IgILDifGFE~f~~NsfEQLcINyaN 554 (928)
|+.++++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987532 2457999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCC
Q 002395 555 ERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCF 634 (928)
Q Consensus 555 EkLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f 634 (928)
||||++|++++|+.||++|++|||+|..|+|.||++|||||++||.|||++|||||++|++||++|++|++.++++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998864 455
Q ss_pred cCCC--CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCc
Q 002395 635 RGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKL 712 (928)
Q Consensus 635 ~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~ 712 (928)
.+++ ...|+|+||||+|+|+++||++||+|.++++++++|++| +
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------------------~ 525 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------------------Q 525 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------------------c
Confidence 4443 568999999999999999999999999999999999765 4
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcc
Q 002395 713 SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFL 792 (928)
Q Consensus 713 tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L 792 (928)
||+++||.||++||++|.+|+||||||||||+.|.|+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|
T Consensus 526 tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l 605 (653)
T cd01379 526 TVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFL 605 (653)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCChHHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 793 LLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 793 ~~~~~~-~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
++.... ..+.++.|+.||..+++ ++|++||||||||.+.++.||..|
T Consensus 606 ~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 606 AYRFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 876543 34678899999998766 579999999999999999998765
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.1e-183 Score=1707.86 Aligned_cols=782 Identities=42% Similarity=0.690 Sum_probs=715.5
Q ss_pred ccccccCccccccccccccccCcEEEEecCCCCeEEEEEEEEeCCeeEEEcCCCcEEE-EeCCCcccCCCCcCCCccccc
Q 002395 98 SVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLK-VKSENLVSANPDILDGVDDLM 176 (928)
Q Consensus 98 ~~~~~~~~~~w~~~~~~~~~~~~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~-v~~~~~~~~n~~~~~~~~Dl~ 176 (928)
++..+.....-.++.+|+.|+ +||||+++++|+.|.|++..+++|+|.+.+|.+++ |+.+++.|+|||.++.+|||+
T Consensus 11 ~lr~~~~~~~~~~~~~~d~kk--~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa 88 (1930)
T KOG0161|consen 11 YLRVSREERLDAQSRPFDSKK--WVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMA 88 (1930)
T ss_pred hhcccHHHhhcccccchhhcc--eeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHH
Confidence 333333333333456777777 89999999999999999998888999998887777 999999999999999999999
Q ss_pred cCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCce
Q 002395 177 QLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVN 254 (928)
Q Consensus 177 ~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m~~~~~~ 254 (928)
.|++||||+|||||++||.++.||||+|.+||+||||+++|||+++++++|+++... ||||||||+.||++|+.+++|
T Consensus 89 ~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~ren 168 (1930)
T KOG0161|consen 89 ELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDREN 168 (1930)
T ss_pred HhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999998665 999999999999999999999
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHhccCC--------CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAALGGG--------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~~~~~--------~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~ 326 (928)
|||+|+|||||||||+||.||+|||.++++ +.++++|+++||||||||||+|++|+|||||||||+|+|+.+
T Consensus 169 QSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~ 248 (1930)
T KOG0161|consen 169 QSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDAT 248 (1930)
T ss_pred ceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCC
Confidence 999999999999999999999999999876 478999999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCC-cccCccccCCCccccCCcchHHHHHHHHH
Q 002395 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQFRIVVE 405 (928)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~~~~ 405 (928)
|.|+||.|++||||||||++|+++|||||||||||+|.++.++..|.|++ +.+|.|++++.. .++|+||+++|..+..
T Consensus 249 G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~ 327 (1930)
T KOG0161|consen 249 GKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDE 327 (1930)
T ss_pred CccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 999999999877 8999999999999999
Q ss_pred HhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEEec
Q 002395 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQN 485 (928)
Q Consensus 406 al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~~ 485 (928)
||++|||+++++.+||+|+||||||||+.|....+.+.+.+.+.+.++.+|.||||+.++|.++++++.+++|++.+.+.
T Consensus 328 a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~ 407 (1930)
T KOG0161|consen 328 AMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKA 407 (1930)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhc
Confidence 99999999999999999999999999999998777778999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHHhh
Q 002395 486 LTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHL 565 (928)
Q Consensus 486 l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~ 565 (928)
.+.+|+..+..||||++|+|||.|||.+||.+|... ....+|||||||+|||+|+.||||||||||+||||||+||+||
T Consensus 408 q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~m 486 (1930)
T KOG0161|consen 408 QNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHM 486 (1930)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchh
Confidence 999999999999999999999999999999999976 5667899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCcccccccC-ChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCCcCCC----C
Q 002395 566 FKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER----D 639 (928)
Q Consensus 566 f~~Eq~ey~~EgI~~~~i~f~-dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~-~~~~~f~~~~----~ 639 (928)
|.+||++|.+|||.|++|+|. |-++|||||++ |.||||+|||||++|++||.+|+.||...| ++||.|.+++ .
T Consensus 487 FvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~ 565 (1930)
T KOG0161|consen 487 FVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAE 565 (1930)
T ss_pred hhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccch
Confidence 999999999999999999997 99999999998 689999999999999999999999999877 8899998873 5
Q ss_pred CCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcc-hhHHhhccccccCCCCccCCCccCCCCCCCCccHHHHH
Q 002395 640 KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCH-LPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKF 718 (928)
Q Consensus 640 ~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~-l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~f 718 (928)
.+|.|.||||+|.|+++||++||+|+++..++.+|+.|++. ++.+|.+...... ....+.. ...+....+.||+..+
T Consensus 566 ~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~-~~~~~~~-~~~~K~g~F~Tvs~~~ 643 (1930)
T KOG0161|consen 566 AHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA-AAKGGEA-LKKTKKGSFRTVSQLY 643 (1930)
T ss_pred hhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch-hhhhhhh-hcccCCcchhhHHHHH
Confidence 79999999999999999999999999999999999999876 4678876211000 0000000 0123344568999999
Q ss_pred HHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccC
Q 002395 719 KGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA 798 (928)
Q Consensus 719 k~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~ 798 (928)
+.||+.||.+|++|+|||||||.||..|.|+.+|.++|+.||||.||||+|||+|+|||.|++|.+|..||.++.+...+
T Consensus 644 keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~ 723 (1930)
T KOG0161|consen 644 KEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPK 723 (1930)
T ss_pred HHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999944444333
Q ss_pred C--CChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccccccchh-HHHHHHHhhhhhhHhhhhhh---hHHH
Q 002395 799 S--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELR---RGIV 872 (928)
Q Consensus 799 ~--~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~~~l~aa-v~IQ~~~Rg~laRk~y~~lr---~aav 872 (928)
. .|.+..|+.|+..+.++..-|++|.||||||.|+++.||..|...+..+ +.+|+.+|||++|+.|.+.. .++.
T Consensus 724 ~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~ 803 (1930)
T KOG0161|consen 724 KGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIK 803 (1930)
T ss_pred ccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4678899999999999999999999999999999999999999888765 57999999999999887654 3788
Q ss_pred HHHHHHHhHHHHHH
Q 002395 873 ALQSFIRGEKIRKE 886 (928)
Q Consensus 873 ~IQs~~Rg~~aRk~ 886 (928)
+||+.+|.|...+.
T Consensus 804 ~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 804 VIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHhhcc
Confidence 88888888765543
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=7.2e-181 Score=1621.32 Aligned_cols=668 Identities=51% Similarity=0.831 Sum_probs=620.6
Q ss_pred CccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002395 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (928)
Q Consensus 171 ~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m 248 (928)
+++||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||++||++|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999987754 899999999999999
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCC--CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~--~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~ 326 (928)
+.+++||||||||||||||||++|++|+||+.++++ ..++++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 379999999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHHHHH
Q 002395 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEA 406 (928)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~a 406 (928)
|.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCC--ccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEEe
Q 002395 407 LDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN--HVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQ 484 (928)
Q Consensus 407 l~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~--~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~~ 484 (928)
|++|||+++++..||+|||||||||||+|...++++ .+.+.+.+.++.||+||||+.++|.++|+++++.++++.+++
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 999999999999999999999999999998765544 367889999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHHh
Q 002395 485 NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRH 564 (928)
Q Consensus 485 ~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~ 564 (928)
+++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.||||||||||||||||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 245689999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC---CCCC
Q 002395 565 LFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE---RDKS 641 (928)
Q Consensus 565 ~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~---~~~~ 641 (928)
+|+.||++|++|||+|..|+|.||++|||||+++|.|||++|||||++|+++|++|++||++.+++|++|... .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886322 2579
Q ss_pred eEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 002395 642 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 720 (928)
Q Consensus 642 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~ 720 (928)
|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+..+ .+ ....+....+..||+++|+.
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~-~~-~~~~~~~~~~~~tv~~~f~~ 557 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS-TG-STSSKGKKKKGQTVGSQFRT 557 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc-cc-cccccccccCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999886 457754321111000 00 01112223456899999999
Q ss_pred HHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccCCC
Q 002395 721 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 800 (928)
Q Consensus 721 qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~ 800 (928)
||++||++|++|+||||||||||+.++|+.||..+|++||||+||||++||+|.|||+|++|.+|++||++|++...+..
T Consensus 558 qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~ 637 (679)
T cd00124 558 SLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKV 637 (679)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred C-hHHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 801 D-PLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 801 d-~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
+ ....|..+|..+++++++|++|+||||||++++..||..|
T Consensus 638 ~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 638 SLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred CCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2 2334999999999999999999999999999999999865
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.2e-179 Score=1610.57 Aligned_cols=667 Identities=30% Similarity=0.475 Sum_probs=592.6
Q ss_pred ccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHH
Q 002395 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (928)
Q Consensus 172 ~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m~ 249 (928)
||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+.+|+|++++++.|+++... |||||+||+.||++|+
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988754 8999999999999999
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~---~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~ 326 (928)
.+++||||||||||||||||++|+||+||+.++++. ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 999999999999999999999999999999998653 23467999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCC-ccccCCcchHHHHHHHHH
Q 002395 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS-CYSINGVDDAEQFRIVVE 405 (928)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~~~~ 405 (928)
|.|+||+|++|||||||||+|++||||||||||||+|+++++|++|+|.+..++.++.... +...++++|+++|++++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755443333322 223567899999999999
Q ss_pred HhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCce----
Q 002395 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT---- 481 (928)
Q Consensus 406 al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~---- 481 (928)
||++|||+++|+..||+|||||||||||+|... .+.+.+.+.+.++.||+||||+.++|.++|+++++.++++.
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 23467888899999999999999999999999988776432
Q ss_pred ---------EEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCC------CCHH
Q 002395 482 ---------IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR------NSFE 546 (928)
Q Consensus 482 ---------~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~------NsfE 546 (928)
+..+++++||.++||||||+||+|||+|||.+||.+|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 33467889999999999999999999999999999998754 3457999999999999984 8999
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHhcCCccccccc-CChHhHHHHhhcCC--------------CccccccccccC
Q 002395 547 QFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKP--------------LGLLSLLDEEST 611 (928)
Q Consensus 547 QLcINyaNEkLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f-~dN~~~ldli~~kp--------------~Gil~lLDEe~~ 611 (928)
|||||||||||||+||+++|+.||+||++|||+|+.+.+ .||++|||||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999986555 69999999999865 599999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCCCcCC--------CCCCeEEEecccc--eeEeccchhhhccccc-hHHHHHHHhhcCcc
Q 002395 612 FPNGTDLTFANKLKQHLNSNPCFRGE--------RDKSFTVSHYAGE--VIYDTTGFLEKNRDLL-HLDSIELLSSCSCH 680 (928)
Q Consensus 612 ~p~~tD~~fl~kl~~~~~~~~~f~~~--------~~~~F~I~HyaG~--V~Y~~~gfleKN~D~l-~~d~~~ll~~S~~~ 680 (928)
+|++||++|++||++++++|++|... ....|+|+||||+ |+|+++||+|||||.+ +.+++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 99999999999999999888877541 2468999999995 9999999999999975 68999999999987
Q ss_pred h-hHHhhccccc-----cCCCCccC----CCcc---------CCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEecc
Q 002395 681 L-PQIFASNMLS-----QSNKPVVG----PLYK---------AGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIK 741 (928)
Q Consensus 681 l-~~lf~~~~~~-----~s~~~~~~----~~~~---------~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIk 741 (928)
+ ..+|...... .+.....+ +.++ ++....+++||+++||.||++||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 5 6788543210 00000000 0000 00112345799999999999999999999999999999
Q ss_pred CCCCCC----------------------CCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccC-
Q 002395 742 PNNFQS----------------------PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA- 798 (928)
Q Consensus 742 PN~~k~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~- 798 (928)
||+.|. |+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|.+..++
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999974 789999999999999999999999999999999999999999999987543
Q ss_pred ------CCChHHHHHHHHHHcCCCCcceEecceeeeeeccccccccccc
Q 002395 799 ------SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (928)
Q Consensus 799 ------~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R 841 (928)
..|+++.|+.||..+++++++|++|+||||||.+++..||+.|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 2478999999999999999999999999999999999999876
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-181 Score=1511.13 Aligned_cols=703 Identities=41% Similarity=0.677 Sum_probs=658.1
Q ss_pred cCCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 002395 168 ILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (928)
Q Consensus 168 ~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay 245 (928)
...|||||+-|+-++|.+|..||+.||..+.||||+|++||+||||+.+|+|+++.|+.|+++... ||||||+|+++|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999998865 899999999999
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~----~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l 321 (928)
++|...++|||||||||||||||+++|.||+|++.+++++ .|.+-||++||+|||||||||+||+||||||||++|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei 175 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEI 175 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEE
Confidence 9999999999999999999999999999999999998765 678899999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHH
Q 002395 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (928)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (928)
+|+..|..+|++|.+|||||||||.|.+|||||||||||++||+.+.|..|++..++.|.||+.++|+.++++||..+|+
T Consensus 176 ~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq 255 (1106)
T KOG0162|consen 176 QFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ 255 (1106)
T ss_pred EecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeec---
Q 002395 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG--- 478 (928)
Q Consensus 402 ~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~--- 478 (928)
+++.||+++|+.++||+.||++||+|||||||.|.+. ++.+.+.+.+.++-.|.|||||...|++.||.|.|...
T Consensus 256 ~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 256 ETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999873 34567888899999999999999999999999999763
Q ss_pred -CceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHH
Q 002395 479 -NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (928)
Q Consensus 479 -~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkL 557 (928)
.+.+..+|+++||...||||||+||.+||||||++||.+|.........+||||||||||+|+.||||||||||.||||
T Consensus 334 kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKL 413 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKL 413 (1106)
T ss_pred cceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999865555678999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhc-CCCccccccccccCCC----CCChHHHHHHHHHHhCCCC
Q 002395 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFP----NGTDLTFANKLKQHLNSNP 632 (928)
Q Consensus 558 Q~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~-kp~Gil~lLDEe~~~p----~~tD~~fl~kl~~~~~~~~ 632 (928)
||.|++-+++.|||||.+|||.|++|+|.||+-++||||. .|.||+++|||-|... .|.|++|+.+|+..+++||
T Consensus 414 QQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~p 493 (1106)
T KOG0162|consen 414 QQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHP 493 (1106)
T ss_pred HHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999995 5899999999999754 4679999999999999999
Q ss_pred CCcCCCCCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCC
Q 002395 633 CFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQK 711 (928)
Q Consensus 633 ~f~~~~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~ 711 (928)
||.. +...|+|+||||+|+||++||.+||||.|..|+++||.+|+++| ..+|.......+ +.+.
T Consensus 494 hF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds--------------krRP 558 (1106)
T KOG0162|consen 494 HFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS--------------KRRP 558 (1106)
T ss_pred cccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc--------------cCCC
Confidence 9975 36789999999999999999999999999999999999999886 567865432211 2234
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhc
Q 002395 712 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGF 791 (928)
Q Consensus 712 ~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~ 791 (928)
+|.+.+.+.|-++|+++|..|+||||||||||+.|.|+.||...|++|+.|+|+-|.|||||+||.+|..|+.|++||.+
T Consensus 559 ~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyai 638 (1106)
T KOG0162|consen 559 PTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAI 638 (1106)
T ss_pred CCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHhee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCC--ChHHHHHHHHHHcCCCCcceEecceeeeeecc-cccccccccccccch-hHHHHHHHhhhhhhHhhhhh
Q 002395 792 LLLESVASQ--DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKEL 867 (928)
Q Consensus 792 L~~~~~~~~--d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g-~l~~LE~~R~~~l~a-av~IQ~~~Rg~laRk~y~~l 867 (928)
|.|..+++| |.+++|+.||...++++++||+|.||||++.+ .+..||+.|++.... |.+||++||.|++|++|.++
T Consensus 639 lsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ 718 (1106)
T KOG0162|consen 639 LSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKM 718 (1106)
T ss_pred cCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999865 78899999999999999999999999999985 588999999999876 67999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHH
Q 002395 868 RRGIVALQSFIRGEKIRKEYALV 890 (928)
Q Consensus 868 r~aav~IQs~~Rg~~aRk~~~~~ 890 (928)
|.-+..+ .-|.+.||+|-..
T Consensus 719 ree~t~l---l~gKKeRRr~Si~ 738 (1106)
T KOG0162|consen 719 REEATKL---LLGKKERRRYSIN 738 (1106)
T ss_pred HHHHHHH---hcchHHHHHHHHH
Confidence 9866553 3477788877533
No 19
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=5.7e-175 Score=1583.68 Aligned_cols=659 Identities=50% Similarity=0.845 Sum_probs=578.6
Q ss_pred ccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHH
Q 002395 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (928)
Q Consensus 172 ~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m~ 249 (928)
||||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|+++.++.|+++... |||||++|++||++|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 79999999999999999999999999999999999999999999999999999999987544 8999999999999999
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEE
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHF 323 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~------~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F 323 (928)
++++||||||||||||||||++|+||+||+.++.+. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 999999999999999999999999999999998764 48999999999999999999999999999999999999
Q ss_pred cCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchHHHHHHH
Q 002395 324 SETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIV 403 (928)
Q Consensus 324 ~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~ 403 (928)
+.+|.++||+|++||||||||+.+++||||||||||||+|+++++|++|+|.++.+|+||+++++..+++.||+++|+.+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeeecCceEE
Q 002395 404 VEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (928)
Q Consensus 404 ~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~e~~~ 483 (928)
+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999998876778889999999999999999999999999999999999999
Q ss_pred ecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHHHHHHH
Q 002395 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (928)
Q Consensus 484 ~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 563 (928)
++++++||.++||+|||+||++||+|||++||.+|++.......+||||||||||+|..||||||||||||||||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999987655678999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCccccccc-CChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCCcCC----
Q 002395 564 HLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGE---- 637 (928)
Q Consensus 564 ~~f~~Eq~ey~~EgI~~~~i~f-~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~-~~~~~f~~~---- 637 (928)
++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|+++|++|+++|.+.+ ++++.|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999 788888654
Q ss_pred --CCCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCC--CC------ccCCCccCCC
Q 002395 638 --RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSN--KP------VVGPLYKAGG 706 (928)
Q Consensus 638 --~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~--~~------~~~~~~~~~~ 706 (928)
....|+|+||||+|+|+++||++||+|.++++++++|++|++.+ ..+|......... .+ ..+......+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 36899999999999999999999999999999999999999886 5678654320000 00 0001111222
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHH
Q 002395 707 ADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFA 786 (928)
Q Consensus 707 ~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~ 786 (928)
...+..||+++|+.||++||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccC-----CCChHHHHHHHHHHcCCCCcceEecceeeeee
Q 002395 787 RRYGFLLLESVA-----SQDPLSVSVAILHQFNILPEMYQVGYTKLFFR 830 (928)
Q Consensus 787 ~RY~~L~~~~~~-----~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr 830 (928)
+||++|++.... ..++++.|+.||+.++++.++|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 35899999999999999999999999999997
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.9e-173 Score=1447.29 Aligned_cols=777 Identities=36% Similarity=0.605 Sum_probs=682.3
Q ss_pred cEEEEecCCCCeEEEEEEEEeCCeeEEEcC--CCcEEEEeCCCcccCCCCcCCCccccccCcCCCchhHHHHHHHHhhcC
Q 002395 120 LQSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQD 197 (928)
Q Consensus 120 ~~vW~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~n~~~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~ 197 (928)
-.||++|+.++|..|.|+.+..+..+++.- .|.+.+...+|++++..+...+|||-++|-||||+++|+|++.||.+|
T Consensus 5 r~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~ 84 (1259)
T KOG0163|consen 5 RLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKD 84 (1259)
T ss_pred ceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhccC
Confidence 369999999999999999999998888654 677888888999999877788999999999999999999999999999
Q ss_pred ccccccCCeEEEecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHH
Q 002395 198 MIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 198 ~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 274 (928)
.||||+.+||||||||+.++ +|+++.+..|++++.+ ||||||||+.|||.|...+.+||||+||||||||||++|.+
T Consensus 85 kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~v 164 (1259)
T KOG0163|consen 85 KIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAV 164 (1259)
T ss_pred chhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHH
Confidence 99999999999999999998 9999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHhc-cCCCCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCceeeeecCCCCCc
Q 002395 275 MQYLAAL-GGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERA 353 (928)
Q Consensus 275 l~yLa~~-~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERN 353 (928)
|+|||.- ++++.|+++||++||||||||||||+||+||||||||++|||+.+|.++|+-|++||||||||+.|+.+|||
T Consensus 165 LrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERN 244 (1259)
T KOG0163|consen 165 LRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERN 244 (1259)
T ss_pred HHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccc
Confidence 9999985 334589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhcCCChhhHhhccCCCcccCccccCCCcc--------------------------ccCCcchHHHHHHHHHHh
Q 002395 354 YHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCY--------------------------SINGVDDAEQFRIVVEAL 407 (928)
Q Consensus 354 fHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~--------------------------~~~~~dD~~~f~~~~~al 407 (928)
|||||||++|++++++++|.|..|.+|+||+.+-.. .-+-+||..+|+.+..||
T Consensus 245 YHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al 324 (1259)
T KOG0163|consen 245 YHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKAL 324 (1259)
T ss_pred hhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHH
Confidence 999999999999999999999999999999854210 012368999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHhhcCeeeEEecC--CCccccC--ChHHHHHHHHhhCCCHHHHHHhhcceeeee-----c
Q 002395 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPV--ADEGLITVAKLIGCDIGELKLALSTRKMRV-----G 478 (928)
Q Consensus 408 ~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~--~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~-----~ 478 (928)
+.+|++++|...||+++|||||||||+|+...+ .+.|.+. +..+|..+|+|||+|.++|...|+.|.|.+ +
T Consensus 325 ~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~k 404 (1259)
T KOG0163|consen 325 KLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFK 404 (1259)
T ss_pred HhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999987543 2345554 457899999999999999999999999864 3
Q ss_pred CceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHHH
Q 002395 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (928)
Q Consensus 479 ~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ 558 (928)
|..|.+||.+.||..+||||||++|++||||||.+||+++.... +..+||||||.|||.|.+||||||||||+|||||
T Consensus 405 GTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ 482 (1259)
T KOG0163|consen 405 GTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQ 482 (1259)
T ss_pred ceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999998743 4679999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC-
Q 002395 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE- 637 (928)
Q Consensus 559 ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~- 637 (928)
+|||+.|++.||+.|++||+....|+|.||++||+|||.|..|||.|||||..+|+.++..|....++.+++|=....+
T Consensus 483 ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PR 562 (1259)
T KOG0163|consen 483 KFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPR 562 (1259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877655322211
Q ss_pred -------C----CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCC
Q 002395 638 -------R----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAG 705 (928)
Q Consensus 638 -------~----~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~ 705 (928)
| ...|.|+||||.|+|.++-|+|||.|.|+..+..|+..|++++ +.+|.+...+ +..+.
T Consensus 563 kSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t-~a~~~-------- 633 (1259)
T KOG0163|consen 563 KSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSST-SAKQT-------- 633 (1259)
T ss_pred hhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCC-ccccc--------
Confidence 1 4689999999999999999999999999999999999999885 6788653211 11111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHH
Q 002395 706 GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 785 (928)
Q Consensus 706 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF 785 (928)
+.+.+.-||+++||.||..||+.|++|..|||||||||..+.+.+||...++.||+|+||..++++.+.|||.|..|.+.
T Consensus 634 ~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 634 RGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred cceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 11334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCCChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccccccchhHHHHHHHhhhhhhHhhh
Q 002395 786 ARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLK 865 (928)
Q Consensus 786 ~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~~~l~aav~IQ~~~Rg~laRk~y~ 865 (928)
+.-|+-.+|+.....||+-.|+++...++++..+|++|.||||||.|..+..++....--...+.|-+.+.-|+.|.+++
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999888999999999999999999999999999999999988887766544444444444455566666665
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002395 866 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNI 916 (928)
Q Consensus 866 ~lr~aav~IQs~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~ 916 (928)
+..-+ .+.+-+.-.++..+..+.+++|+..|||++|+++++.
T Consensus 794 k~q~~---------a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 794 KSQYG---------ALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred Hhhhh---------hhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 43221 1111121222233444555666666666666655443
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-172 Score=1519.96 Aligned_cols=739 Identities=53% Similarity=0.853 Sum_probs=697.0
Q ss_pred CCCCcCCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCC-CCCHHHHHHhhcCCC--CCCchhHH
Q 002395 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSI--ESPHVYAI 240 (928)
Q Consensus 164 ~n~~~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~--~~PHifai 240 (928)
.||+. .++|||+.|+||||++||+||+.||..+.||||.|.+|||||||+.+| +|+++.|..|+ ... ..||+||+
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~fav 80 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAV 80 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhH
Confidence 35566 899999999999999999999999999999999999999999999999 99999999999 332 37999999
Q ss_pred HHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCC--C-CchhhhhhhhHHHHhhcCcccCCCCCCCCccc
Q 002395 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--S-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGK 317 (928)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~--~-~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK 317 (928)
|+.||+.|.....||+||||||||||||+++|++|+||+.++++ . +||++||++|||+||||||||.+|||||||||
T Consensus 81 A~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK 160 (862)
T KOG0160|consen 81 AEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGK 160 (862)
T ss_pred HHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhh
Confidence 99999999999999999999999999999999999999999987 3 89999999999999999999999999999999
Q ss_pred EEEEEEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCccccCCcchH
Q 002395 318 LIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDA 397 (928)
Q Consensus 318 ~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~ 397 (928)
|++|+|+..|+|.||+|+|||||||||+.++++|||||||||+|+|.+ +++++|.|.++..|.||+|++|..+++++|+
T Consensus 161 ~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~ 239 (862)
T KOG0160|consen 161 VIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDA 239 (862)
T ss_pred HHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecCCCccccCChHHHHHHHHhhCCCHHHHHHhhcceeeee
Q 002395 398 EQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRV 477 (928)
Q Consensus 398 ~~f~~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~ 477 (928)
++|..++.||..+|++.++|+.||++||||||||||+|...++++...... +.+..+|+|||++.+.|...|+.|.|.+
T Consensus 240 ~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~-~~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 240 EEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVD-DHLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccc-hHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999876654444333 4899999999999999999999999999
Q ss_pred cCceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCceeeeccCCCCcCCCCCCHHHHHHHHhhHHH
Q 002395 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (928)
Q Consensus 478 ~~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkL 557 (928)
+++.+.++++..||...||++||.||++||+|+|++||.+|..+......+||||||||||.|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 99999999999999999999999999999999999999999987666679999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC
Q 002395 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 637 (928)
Q Consensus 558 Q~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~~f~~~ 637 (928)
||+||+|+|+.||+||.+|+|+|..|+|.||++|+++|++ |.|++++|||||++|.++|++|..||.+.+.+|++|.++
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999988
Q ss_pred C--CCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 002395 638 R--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 715 (928)
Q Consensus 638 ~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~ 715 (928)
+ ...|+|.||||+|+|+++|||+||||.+++++++++..|++.+...+......++ .+.+++.||+
T Consensus 478 r~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~------------~~~~~~~tv~ 545 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADS------------SAKSKRSTVG 545 (862)
T ss_pred CCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcch------------hhhhhcccHH
Confidence 6 4689999999999999999999999999999999999999987655543221111 1355678999
Q ss_pred HHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhccccc
Q 002395 716 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 795 (928)
Q Consensus 716 ~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 795 (928)
++|+.+|..||++|++|.||||||||||..+.|..|+..+|++||||+||||++||++.|||.|.+|.||+.||++|+|
T Consensus 546 s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~- 624 (862)
T KOG0160|consen 546 SQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP- 624 (862)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccccccchh-HHHHHHHhhhhhhHhhhhhhhHHHHH
Q 002395 796 SVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVAL 874 (928)
Q Consensus 796 ~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~~~l~aa-v~IQ~~~Rg~laRk~y~~lr~aav~I 874 (928)
.....|++..|+.||+..+++ .|++|+||||+|.|+++.|+.+|...+.++ +.||+.+|+|+.|+.|..+|++++.|
T Consensus 625 ~~~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~ 702 (862)
T KOG0160|consen 625 NDSASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIII 702 (862)
T ss_pred chhcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 545567799999999999887 999999999999999999999998888665 57999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEecc
Q 002395 875 QSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSG 926 (928)
Q Consensus 875 Qs~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~r~aai~IQs~ 926 (928)
|+.+||+++|+. .+ +..||+.||+.||++..|++|...+.+++.+|+.
T Consensus 703 Q~~~rG~~~r~~--~~--~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 703 QAYSRGVLARRE--TE--REAAAIGIQKECRSYLNRRRYRALIPASITIQSG 750 (862)
T ss_pred hhhhhHHHHHHh--hH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999992 22 6789999999999999999999999999999974
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.7e-117 Score=1074.79 Aligned_cols=745 Identities=36% Similarity=0.521 Sum_probs=637.0
Q ss_pred ccCCCCcCCCccccccCcCCCchhHHHHHHHHhhcCccccccCCeEEEecCCCCCC-CCCHHHHHHhhcCCCC--CCchh
Q 002395 162 VSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVY 238 (928)
Q Consensus 162 ~~~n~~~~~~~~Dl~~L~~L~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHif 238 (928)
....++...+++||++|++++|+.++++|..||..+.||||+|++|++||||+.+| +|.++++..|.++..+ +||||
T Consensus 53 ~~~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phif 132 (1062)
T KOG4229|consen 53 KALHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIF 132 (1062)
T ss_pred ccccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchh
Confidence 34566678899999999999999999999999999999999999999999999999 9999999999966654 79999
Q ss_pred HHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhcc-CC-CCchhhhhhhhHHHHhhcCcccCCCCCCCCcc
Q 002395 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG-GG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRFG 316 (928)
Q Consensus 239 aiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~-~~-~~i~~~il~snpiLEAFGNAkT~rN~NSSRFG 316 (928)
++|+.||++|++...||||+|||||||||||+|+++++||+.++ +. +.++..|+.+||+|||||||+|++||||||||
T Consensus 133 a~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfg 212 (1062)
T KOG4229|consen 133 AIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFG 212 (1062)
T ss_pred hhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhh
Confidence 99999999999999999999999999999999999999999999 43 37899999999999999999999999999999
Q ss_pred cEEEEEEcCCCCeeceeeeeeecCceeeeecCCCCCcchhhhHhhcCCChhhHhhccCCCcccCccccCCCcccc-CCcc
Q 002395 317 KLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSI-NGVD 395 (928)
Q Consensus 317 K~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqll~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~-~~~d 395 (928)
|||+++|..+|.+.||+|..||||||||+.|..+||||||||++++|++.+++..+.|..+++|.||+++.+..+ ++.+
T Consensus 213 k~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~ 292 (1062)
T KOG4229|consen 213 KYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGED 292 (1062)
T ss_pred heEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHhhcCeeeEEecC--CCccccCChHHHHHHHHhhCCCHHHHHHhhcce
Q 002395 396 DAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTR 473 (928)
Q Consensus 396 D~~~f~~~~~al~~lG~~~~e~~~I~~ilAaILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~r 473 (928)
+..+|..+..||..+||+.+++.+|++++|||||+|||+|..... .+.+.+.+.+.++.+|.||.++++.|.++++.+
T Consensus 293 ~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~ 372 (1062)
T KOG4229|consen 293 DVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTAR 372 (1062)
T ss_pred HHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhccc
Confidence 999999999999999999999999999999999999999976433 345678899999999999999999999999999
Q ss_pred eeeecCceEEecCChhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC-CCceeeeccCCCCcCCCCCCHHHHHHHH
Q 002395 474 KMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRR-TGRSISILDIYGFESFDRNSFEQFCINY 552 (928)
Q Consensus 474 ~~~~~~e~~~~~l~~~qA~~~RDalak~LY~~LF~wlV~~IN~~l~~~~~~-~~~~IgILDifGFE~f~~NsfEQLcINy 552 (928)
+....||.+..+++.++|.++|||+||+||++||.|||.+||..+.+.... ...+||||||||||+|+.|+||||||||
T Consensus 373 ~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~ 452 (1062)
T KOG4229|consen 373 VNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINL 452 (1062)
T ss_pred ceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999874321 3589999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHhcCCcccccccCChHhHHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCC
Q 002395 553 ANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNP 632 (928)
Q Consensus 553 aNEkLQ~~f~~~~f~~Eq~ey~~EgI~~~~i~f~dN~~~ldli~~kp~Gil~lLDEe~~~p~~tD~~fl~kl~~~~~~~~ 632 (928)
|||+||++||+|||.+||+||..|+|+|..|.|.||..|+|+|..||.||+.+||||+.+|+++|.+++.|++..++.+.
T Consensus 453 Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~ 532 (1062)
T KOG4229|consen 453 ANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNN 532 (1062)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCcCC---CCCCeEEEecccceeEeccchhhhccccchHHHHHHHhhcCcchhHHhhccccc-c----------CCCCcc
Q 002395 633 CFRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLS-Q----------SNKPVV 698 (928)
Q Consensus 633 ~f~~~---~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~-~----------s~~~~~ 698 (928)
.|..+ ....|+|.||||.|.|++.||+|||+|.++.|+..++++|.+.+.+.+.+.... . ...+..
T Consensus 533 ~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~ 612 (1062)
T KOG4229|consen 533 LYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVP 612 (1062)
T ss_pred ccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhccccccc
Confidence 55432 267999999999999999999999999999999999999887665443221100 0 001111
Q ss_pred CCC------ccCCCCCC----------CCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCccccc-chhhhhc
Q 002395 699 GPL------YKAGGADS----------QKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQG-LVLQQLR 761 (928)
Q Consensus 699 ~~~------~~~~~~~~----------~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~-~V~~QLr 761 (928)
.+. .+.+...+ ...+++.+++-++.+..+.|.+.++||.|||++|+.-.+..++.. ....++.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~ 692 (1062)
T KOG4229|consen 613 LEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLS 692 (1062)
T ss_pred chhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhh
Confidence 010 11111111 123566666668888999999999999999999999999999988 8999999
Q ss_pred ccchhHHHHHhhcCCCcccCHHHHHHHHhcccccccCCCCh-HHHHHHHHHHcCCCCcceEecceeeeeecccccccccc
Q 002395 762 CCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP-LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDT 840 (928)
Q Consensus 762 ~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~-~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~ 840 (928)
..|..++....+.|+..++.|.+++++++...-...+..+. ...|..++...++ +.+..+.++++.+..--..+.-.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 770 (1062)
T KOG4229|consen 693 SRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAI--NMKSERLTTLLPRYIPDPCLDPV 770 (1062)
T ss_pred hcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccc--cchhhhhcccccccCccccCCcc
Confidence 99999999999999999999999988877544322211121 2234445554333 67889999998887654444444
Q ss_pred cccccchhHHHHHHHhhhhhhHhhhhhh----hHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002395 841 RNRTLHGILRVQSCFRGHQARLCLKELR----RGIVALQSFIRGEKIRKEYALV-LQRHRAAVVIQRQIKSRV 908 (928)
Q Consensus 841 R~~~l~aav~IQ~~~Rg~laRk~y~~lr----~aav~IQs~~Rg~~aRk~~~~~-~~~~~AAi~IQs~~Rg~~ 908 (928)
+...+...+..|..++.|..++++...+ .....+|.-++....+..+... .....+.+.+|..|-+-.
T Consensus 771 ~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~ 843 (1062)
T KOG4229|consen 771 RRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGEL 843 (1062)
T ss_pred ccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhh
Confidence 4444455567788888888777654443 2567778777776666654322 123457778888887733
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.77 E-value=9.7e-09 Score=106.32 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCCC----chhhhhhhhHHHHhhc-CcccCCCCC
Q 002395 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG----IEYEILKTNPILEAFG-NAKTSRNDN 311 (928)
Q Consensus 237 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~----i~~~il~snpiLEAFG-NAkT~rN~N 311 (928)
||+.+..++..|+ ++.|+||+..|+||||||.|+.--. ...+ ..+.+++.....+++. +|.|.+|++
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~ 79 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEH 79 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHHHHHHHHhhccccccccccCCCCc
Confidence 8888889999998 5689999999999999998865211 0011 1223667788888999 999999999
Q ss_pred CCCcccEEEEEEcCCCCee
Q 002395 312 SSRFGKLIEIHFSETGKIS 330 (928)
Q Consensus 312 SSRFGK~i~l~F~~~g~i~ 330 (928)
|||+..+++|++.......
T Consensus 80 SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 80 SSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred cCcccEEEEEEEEEeecCC
Confidence 9999999999998654443
No 24
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=97.97 E-value=8.3e-07 Score=110.86 Aligned_cols=203 Identities=19% Similarity=0.102 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccccchhhhhcccchhHHHHHhhcCCCcccCHHHHHHHHhcccccc
Q 002395 717 KFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLES 796 (928)
Q Consensus 717 ~fk~qL~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~ 796 (928)
++......++..+....|.|++|++-|..+....|+...|..|+++.|+++..++++.+++..+++..|...+.++.+..
T Consensus 794 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~ 873 (1062)
T KOG4229|consen 794 SPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPET 873 (1062)
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCcc
Confidence 55566778999999999999999999988888999999999999999999999999999999999999999999988832
Q ss_pred cCCCChHHHHHHHHHHcCCCCcceEecceeeeeecccccccccccc-cccc-hhHHHHHHHhhhhhhHhhhhhhhHHHHH
Q 002395 797 VASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN-RTLH-GILRVQSCFRGHQARLCLKELRRGIVAL 874 (928)
Q Consensus 797 ~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFlr~g~l~~LE~~R~-~~l~-aav~IQ~~~Rg~laRk~y~~lr~aav~I 874 (928)
.. .........+......++.|++++|+.......++..-. .... .+...|++++....|+.+.++..+.+.+
T Consensus 874 ~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~ 948 (1062)
T KOG4229|consen 874 VD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLI 948 (1062)
T ss_pred ch-----hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHH
Confidence 11 112222333344667899999999998776544433221 1222 2567899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEecc
Q 002395 875 QSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSG 926 (928)
Q Consensus 875 Qs~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~r~aai~IQs~ 926 (928)
| |+.+..|+.-........++.-+|..|+.+..+..+...+++.+.+|+.
T Consensus 949 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 998 (1062)
T KOG4229|consen 949 Q--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSP 998 (1062)
T ss_pred H--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcc
Confidence 9 8888887743322234568899999999999999999999998888864
No 25
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=97.90 E-value=3.4e-05 Score=60.35 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=37.8
Q ss_pred EEEEecCCCCeEEEEEEEEeCCeeEEEcCCCcEEEEeCCC
Q 002395 121 QSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSEN 160 (928)
Q Consensus 121 ~vW~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~ 160 (928)
.||+|+++++|+.|+|++..++.++|.+.+|++.+|+.++
T Consensus 3 ~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 3 WVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp EEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred EEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 7999999999999999999999999999999999998764
No 26
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.23 E-value=0.00041 Score=46.01 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002395 895 RAAVVIQRQIKSRVARQKLK 914 (928)
Q Consensus 895 ~AAi~IQs~~Rg~~~Rr~y~ 914 (928)
+||++||+.||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57788888888888887774
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.85 E-value=0.00073 Score=83.27 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=69.7
Q ss_pred Eecceeeeeeccccccccccccccc-chhHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002395 821 QVGYTKLFFRAGQIGMLEDTRNRTL-HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVV 899 (928)
Q Consensus 821 ~iGkTKVFlr~g~l~~LE~~R~~~l-~aav~IQ~~~Rg~laRk~y~~lr~aav~IQs~~Rg~~aRk~~~~~~~~~~AAi~ 899 (928)
.++..++++|......+-+..-... ++++.||+.+||+++|+... ...+++.||+.||++..|++|... ..+++.
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~ 746 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRAL---IPASIT 746 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3556777788777777666554344 45678999999999998333 567899999999999999999754 479999
Q ss_pred HHHHHHHHHHHH
Q 002395 900 IQRQIKSRVARQ 911 (928)
Q Consensus 900 IQs~~Rg~~~Rr 911 (928)
||+.+|++.+|+
T Consensus 747 ~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 747 IQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHhcc
Confidence 999999999987
No 28
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.45 E-value=0.0037 Score=41.45 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhHHHHHHH
Q 002395 869 RGIVALQSFIRGEKIRKEY 887 (928)
Q Consensus 869 ~aav~IQs~~Rg~~aRk~~ 887 (928)
++++.||+.|||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555554
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.34 E-value=0.0013 Score=81.23 Aligned_cols=80 Identities=28% Similarity=0.367 Sum_probs=60.2
Q ss_pred chhHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhHHHHHHHHHHH-------H-----------------------HHH
Q 002395 846 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL-------Q-----------------------RHR 895 (928)
Q Consensus 846 ~aav~IQ~~~Rg~laRk~y~~lr~aav~IQs~~Rg~~aRk~~~~~~-------~-----------------------~~~ 895 (928)
.++..||..+|+|+.|+.|..++..++.||+.+||+..|+.|.++. + ...
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 4567899999999999999999999999999999999999997531 1 122
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHhceeEEEec
Q 002395 896 AAVVIQRQIKSRVAR--QKLKNIKYSSIMIQS 925 (928)
Q Consensus 896 AAi~IQs~~Rg~~~R--r~y~~~r~aai~IQs 925 (928)
||+.||..+|-|..- ..|.++-+|++.||+
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQs 922 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQS 922 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555 455666667777765
No 30
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.99 E-value=0.0057 Score=70.15 Aligned_cols=64 Identities=30% Similarity=0.420 Sum_probs=45.7
Q ss_pred EecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHH-HHHHHHH
Q 002395 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYL 278 (928)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~-K~il~yL 278 (928)
++|||...| |+..+-..++.+..-|-|-| -+.-|..-..||+||++||.|||||+-. ..++.|-
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~ 87 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE 87 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH
Confidence 399999988 67777777766555554432 3455666678999999999999999754 3334443
No 31
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.80 E-value=0.011 Score=41.34 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002395 894 HRAAVVIQRQIKSRVARQKLK 914 (928)
Q Consensus 894 ~~AAi~IQs~~Rg~~~Rr~y~ 914 (928)
.++|++||+.||||++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 468889999999999998884
No 32
>PTZ00014 myosin-A; Provisional
Probab=95.69 E-value=0.019 Score=72.03 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002395 868 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQK 912 (928)
Q Consensus 868 r~aav~IQs~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~ 912 (928)
...+..||++|||+++|++|.+. ..|+++||++||+|+.++.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 45688999999999999999754 5799999999999999875
No 33
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.34 E-value=0.013 Score=55.56 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.94 E-value=0.026 Score=39.37 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHhHHHHHHH
Q 002395 868 RRGIVALQSFIRGEKIRKEY 887 (928)
Q Consensus 868 r~aav~IQs~~Rg~~aRk~~ 887 (928)
..+++.||+.|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888887776
No 35
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.54 E-value=0.027 Score=54.00 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=21.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 45789999999999999999999887764
No 36
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.32 E-value=0.056 Score=51.48 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.......+++|.|++|+|||+.++.+.+.+.
T Consensus 14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3444568999999999999999999998885
No 37
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.30 E-value=0.079 Score=67.78 Aligned_cols=75 Identities=27% Similarity=0.342 Sum_probs=61.4
Q ss_pred cchhHHHHHHHhhhhh----hHhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002395 845 LHGILRVQSCFRGHQA----RLCLKELRRGIVALQSFIRGEKIRKEYALVLQ----RHRAAVVIQRQIKSRVARQKLKNI 916 (928)
Q Consensus 845 l~aav~IQ~~~Rg~la----Rk~y~~lr~aav~IQs~~Rg~~aRk~~~~~~~----~~~AAi~IQs~~Rg~~~Rr~y~~~ 916 (928)
....+-||+.|||++. ...+......++.+|++.||+++|+.|.+..+ ...++++||+.+|.+.+|+.|+.+
T Consensus 565 ~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 565 TPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred CchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 3457789999999984 33345567789999999999999999876533 456899999999999999999988
Q ss_pred hce
Q 002395 917 KYS 919 (928)
Q Consensus 917 r~a 919 (928)
..+
T Consensus 645 ~~s 647 (1401)
T KOG2128|consen 645 FTS 647 (1401)
T ss_pred hcC
Confidence 754
No 38
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.20 E-value=0.035 Score=52.66 Aligned_cols=22 Identities=50% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999997
No 39
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.08 E-value=0.033 Score=56.51 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.6
Q ss_pred HHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
...+...+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456678999999999999999999999988763
No 40
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.03 E-value=0.04 Score=56.26 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+.|+|+|+||||||+.++.|...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877653
No 41
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.74 E-value=0.11 Score=56.59 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999876654
No 42
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.70 E-value=0.061 Score=46.51 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 43
>PRK06696 uridine kinase; Validated
Probab=93.20 E-value=0.12 Score=55.17 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 239 aiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.+|+..+.. .....--|.|+|.||||||+.++.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355555432 3556788999999999999999999998854
No 44
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.18 E-value=0.075 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (928)
...|+|.|+|||||||.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 688999999999999999887774
No 45
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.14 E-value=0.083 Score=55.49 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+..-|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.09 E-value=0.069 Score=50.88 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=21.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999984
No 47
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.09 E-value=0.077 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAM 275 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il 275 (928)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999975
No 48
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.04 E-value=0.072 Score=55.78 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.|+|+|++|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988764
No 49
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.03 E-value=0.15 Score=50.25 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.....|+++|+.|||||+.+|.+++.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446789999999999999999998877
No 50
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.87 E-value=0.069 Score=50.19 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+.|+|.|++|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 51
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.86 E-value=0.12 Score=58.29 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=28.6
Q ss_pred HHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..+.++..+. .|||+|..|||||+..+.++.++..
T Consensus 136 ~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 136 VIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3455666554 5999999999999999999998864
No 52
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.81 E-value=0.12 Score=56.69 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=27.4
Q ss_pred HHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++.|+... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 45555433 346999999999999999999998854
No 53
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.76 E-value=0.077 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
..+.|+|.|.||||||+.++.+++.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998875
No 54
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.75 E-value=0.084 Score=54.92 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 55
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=92.71 E-value=0.16 Score=63.65 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002395 847 GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRK-EYALVLQRHRAAVVIQRQIKSRVARQKLKNIKY 918 (928)
Q Consensus 847 aav~IQ~~~Rg~laRk~y~~lr~aav~IQs~~Rg~~aRk-~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~r~ 918 (928)
++-.+|+.+|||+.|+...+.-.+++.||..+|-++.-+ .+. .+..+|+++||+.+|.+.+|.+|+++..
T Consensus 868 rwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~--~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 868 RWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTE--ERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred HHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455788888888888888877778888888888887642 222 3456899999999999999999988764
No 56
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.62 E-value=0.085 Score=54.88 Aligned_cols=26 Identities=50% Similarity=0.546 Sum_probs=23.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
|-|+|.||||||+.++.|...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997643
No 57
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.58 E-value=0.086 Score=54.46 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
-.-|||||.||+|||+.+|.+++-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999997655
No 58
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.58 E-value=0.11 Score=54.53 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.+..-|.|+|.||||||+.++.|...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999999999877653
No 59
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.55 E-value=0.14 Score=51.83 Aligned_cols=29 Identities=38% Similarity=0.429 Sum_probs=25.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998754
No 60
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.45 E-value=0.19 Score=53.04 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+-.+.+.+........|+|.|++|+|||+.++.+.+++..
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344555555667889999999999999999999988764
No 61
>PRK08233 hypothetical protein; Provisional
Probab=92.41 E-value=0.085 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.-|.|+|.||||||+.++.+.+.|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999887763
No 62
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.37 E-value=0.082 Score=58.84 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=25.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
++.+.+=|.||||||||++++-||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568889999999999999999999884
No 63
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=92.37 E-value=0.36 Score=58.02 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002395 869 RGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK 917 (928)
Q Consensus 869 ~aav~IQs~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~r 917 (928)
.-+..||+.|||+++|.+|++++ .+++.|+ +||.+..+...+.+.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K~ks~v~el~ 741 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYKLKSYVQELQ 741 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHH
Confidence 45788999999999999997664 5667777 999877665554443
No 64
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.28 E-value=0.11 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|+|+|++|||||+.++.+.+.+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999988763
No 65
>PRK06762 hypothetical protein; Provisional
Probab=92.26 E-value=0.13 Score=51.93 Aligned_cols=25 Identities=48% Similarity=0.595 Sum_probs=23.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999888
No 66
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.25 E-value=0.2 Score=58.59 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 236 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.++.+.-+|...++.-.+.|.+.|.|.||+|||+..++|+.+.
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 4455556777777777889999999999999999998876543
No 67
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.22 E-value=0.1 Score=52.50 Aligned_cols=23 Identities=52% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998876
No 68
>PF12846 AAA_10: AAA-like domain
Probab=92.14 E-value=0.12 Score=56.48 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=26.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
|..++|.|.||||||++++.++..++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999888765
No 69
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.05 E-value=0.13 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998887
No 70
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.97 E-value=0.18 Score=56.35 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=27.7
Q ss_pred HHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.+.+++.+ ..|+|+|..|||||+.++.++.++..
T Consensus 125 L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLAR--KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444443 57999999999999999999999865
No 71
>PRK07261 topology modulation protein; Provisional
Probab=91.92 E-value=0.12 Score=52.83 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999985543
No 72
>PRK06547 hypothetical protein; Provisional
Probab=91.83 E-value=0.25 Score=50.81 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=25.1
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
......-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667889999999999999999998764
No 73
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.78 E-value=0.14 Score=52.92 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|.|+|.||||||+.++.+.+.|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 74
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.78 E-value=0.27 Score=52.64 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.3
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHhccC
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 283 (928)
...+..-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467889999999999999999999998877554
No 75
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.76 E-value=0.12 Score=52.68 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=25.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+....|+|+|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999988864
No 76
>PTZ00301 uridine kinase; Provisional
Probab=91.71 E-value=0.14 Score=54.44 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|-|+|-||||||+.++.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999999987764
No 77
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.70 E-value=0.12 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=23.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999988764
No 78
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.68 E-value=0.13 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888754
No 79
>PF05729 NACHT: NACHT domain
Probab=91.61 E-value=0.16 Score=50.26 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 479999999999999999999887743
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.36 E-value=0.31 Score=52.46 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
|-.+.+.+.......+++|.|++|+|||+.+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455666655666679999999999999999988887764
No 81
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.35 E-value=0.18 Score=51.70 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa 279 (928)
++++.|.||.|||+.+|.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 82
>PRK08118 topology modulation protein; Reviewed
Probab=91.33 E-value=0.17 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+-|+|.|.+|||||+.+|.|-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987764
No 83
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.21 E-value=0.18 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999987654
No 84
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.14 E-value=0.13 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~y 277 (928)
+.|+|+|.||||||+..+.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999998554
No 85
>PF13245 AAA_19: Part of AAA domain
Probab=91.11 E-value=0.28 Score=43.51 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999999888888875
No 86
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=91.11 E-value=0.15 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChhHHHHHH--HHHHH
Q 002395 255 QSIIISGESGAGKTETAKIA--MQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~i--l~yLa 279 (928)
+-|||||-||||||++.+.+ |-|.|
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~Gy~c 28 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDLGYYC 28 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhcCeeE
Confidence 56999999999999998876 44444
No 87
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.04 E-value=0.16 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998754
No 88
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.00 E-value=0.16 Score=57.85 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=27.3
Q ss_pred HHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+..+.. .....|+|+|++|||||++.+.++.++..
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 444443 23578999999999999999999988753
No 89
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.95 E-value=0.3 Score=56.14 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=38.7
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++|+-.... .+|+-.. .+++... +-+++++++|+.|+|||+.++.+.+.|-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4566655433 5776543 4444444 56899999999999999999999998853
No 90
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.92 E-value=0.15 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998875
No 91
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=90.90 E-value=0.19 Score=47.32 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=22.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|.|.|++|.|||..++.++++|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999998865
No 92
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.83 E-value=0.25 Score=56.33 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=29.7
Q ss_pred HHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++.......+.+++|+|++|+|||.+++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344445677889999999999999999999988854
No 93
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.77 E-value=0.22 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...|+|+|.+|||||+.++.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 46699999999999999999988874
No 94
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.72 E-value=0.28 Score=49.91 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+...|+|.|.+|||||+.++.+...|..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999965
No 95
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.67 E-value=0.15 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|++.|.||||||+.++.+-+.|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999988763
No 96
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.54 E-value=0.2 Score=52.74 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
....-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999988887654
No 97
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.48 E-value=0.48 Score=52.78 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.4
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456778899999999999999887777643
No 98
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.42 E-value=0.18 Score=55.25 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
....|+|+|+.|||||++.+.++.++-.-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc
Confidence 46889999999999999999999887653
No 99
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.41 E-value=0.23 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|+|+|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 100
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.35 E-value=0.23 Score=50.86 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|+|+|+.|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999965
No 101
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.34 E-value=0.21 Score=57.34 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
...-|+|+|++|||||++.+.++.++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46889999999999999999999998653
No 102
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.33 E-value=0.38 Score=50.25 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.6
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
...+...|+|+|.||||||+.++.+...|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34667899999999999999999999988654
No 103
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.30 E-value=0.2 Score=52.24 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999987764
No 104
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.23 E-value=0.3 Score=55.51 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=25.2
Q ss_pred HHHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.+++.+ ..|+|+|+.|||||+..+.++.++-
T Consensus 155 ~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 155 HAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 334444 5699999999999999999988874
No 105
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=90.06 E-value=0.19 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhHHHHHH--HHHHHh
Q 002395 256 SIIISGESGAGKTETAKIA--MQYLAA 280 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~i--l~yLa~ 280 (928)
-|||||-||||||.+.+-+ |-|.|.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycv 29 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCV 29 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeee
Confidence 4899999999999998876 445543
No 106
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.04 E-value=0.17 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (928)
+-|+|.|.||||||+.++.|++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998865
No 107
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.02 E-value=0.26 Score=50.73 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=23.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
-|.|+|.||||||+..+.++..|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999999763
No 108
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.01 E-value=0.2 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
--+++-|+||||||++.|+|-+-+.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3478999999999999999966543
No 109
>PRK06217 hypothetical protein; Validated
Probab=89.98 E-value=0.22 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999997765
No 110
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.92 E-value=0.2 Score=48.79 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887664
No 111
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.89 E-value=0.27 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~ 281 (928)
++|+|++|+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999998763
No 112
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.83 E-value=0.24 Score=57.02 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999999975
No 113
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.65 E-value=0.37 Score=49.15 Aligned_cols=27 Identities=37% Similarity=0.359 Sum_probs=23.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
+++|.|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999988888877544
No 114
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.64 E-value=0.3 Score=48.46 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
-|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998754
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.63 E-value=0.61 Score=49.58 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
..+..++|.||+|+|||+.++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999998877553
No 116
>PRK12377 putative replication protein; Provisional
Probab=89.41 E-value=0.53 Score=51.27 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
-|+++.|..-...... ..++++|+|.+|+|||+.+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566665554444432 35799999999999999999999999864
No 117
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.39 E-value=0.27 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
+|++.|.+|||||+.+|.+-+.|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 118
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.38 E-value=0.47 Score=53.27 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=27.9
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+.+...+....++++|++|+|||+.++.+.+++..
T Consensus 28 ~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 28 SRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33444555457999999999999999999998864
No 119
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.24 E-value=0.4 Score=55.29 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=29.2
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
........+.+++|+|++|+|||.+++.+++.+..
T Consensus 47 ~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 47 RPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34445667789999999999999999999998854
No 120
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=89.21 E-value=1.8 Score=50.83 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 237 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+|...-.|...+..-.+.|.+.|.|+||+|||+..+.|++..
T Consensus 140 ~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred eccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344455678888777889999999999999999999888654
No 121
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.16 E-value=0.3 Score=49.41 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=21.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|.|||.+|||||+.++.|-++|.-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 889999999999999999998753
No 122
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=89.12 E-value=0.31 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
-|+|.|.+|||||+.++.+.+.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 123
>PRK04182 cytidylate kinase; Provisional
Probab=88.96 E-value=0.29 Score=49.48 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
.|+|+|.+|||||+.++.+-+-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997765
No 124
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=88.74 E-value=0.31 Score=48.14 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~y 277 (928)
|+++|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999988664
No 125
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=88.71 E-value=0.5 Score=55.64 Aligned_cols=64 Identities=30% Similarity=0.503 Sum_probs=40.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC-------CchhhhhhhhHHHHhhcCcccC-CCCCCCCcccEEE
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEAFGNAKTS-RNDNSSRFGKLIE 320 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~-------~i~~~il~snpiLEAFGNAkT~-rN~NSSRFGK~i~ 320 (928)
..+=+|+|+||||+||-..++.|=+ +...+++. .|-..+++| |-||..|-. .-.+.+|-|+|-.
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~-~S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQ-ASPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHh-hCcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCcceeE
Confidence 5577899999999999988877633 33332221 333333332 459988821 2346788999864
No 126
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.68 E-value=0.34 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
++.|+|.|.+|||||+.++.+.+.|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 127
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=88.68 E-value=0.35 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (928)
...|+|.|+||+||||++-.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 128
>PRK13764 ATPase; Provisional
Probab=88.56 E-value=0.43 Score=58.12 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..|+|+|.+|||||++++.++.++..
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45999999999999999999999864
No 129
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.47 E-value=0.42 Score=57.06 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=26.7
Q ss_pred HHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.++.+...+ .--|+|+|++|||||++.+.+++++.
T Consensus 233 ~l~~~~~~~-~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRRP-HGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 445555433 34689999999999999998888774
No 130
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.47 E-value=0.36 Score=51.35 Aligned_cols=23 Identities=48% Similarity=0.541 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|-|+|-||||||+.+|.|..-|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999977775
No 131
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.45 E-value=0.3 Score=53.29 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhccC
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 283 (928)
.+..++-+-||||+|||++.|.|+.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 45678889999999999999999987764443
No 132
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=88.45 E-value=0.68 Score=60.05 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=60.7
Q ss_pred ccchhHHHHHHHhhhhhhHhhhhhhhHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeEE
Q 002395 844 TLHGILRVQSCFRGHQARLCLKELRRGIVALQ-SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIM 922 (928)
Q Consensus 844 ~l~aav~IQ~~~Rg~laRk~y~~lr~aav~IQ-s~~Rg~~aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~r~aai~ 922 (928)
....++++|..||....|+.|++..+.+..+| ..+|....+...... ...+|++.+|++||.+..+++|..+.+.++.
T Consensus 792 ~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~-~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~ 870 (1463)
T COG5022 792 KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVE-FSLKAEVLIQKFGRSLKAKKRFSLLKKETIY 870 (1463)
T ss_pred HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHH
Confidence 34567888888988888888888888888888 566666655543322 3557888888888888888888888877777
Q ss_pred Eec
Q 002395 923 IQS 925 (928)
Q Consensus 923 IQs 925 (928)
+|+
T Consensus 871 ~~~ 873 (1463)
T COG5022 871 LQS 873 (1463)
T ss_pred HHH
Confidence 765
No 133
>PHA00729 NTP-binding motif containing protein
Probab=88.39 E-value=0.72 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
|....+.+. +..-..|+|+|.+|+|||+.++.|.+.+.
T Consensus 5 ~k~~~~~l~-~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYN-NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHh-cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444444443 33446899999999999999999988765
No 134
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.33 E-value=0.47 Score=55.45 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=34.5
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 234 ~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
..|+... ....+.++..+...+++|.|++|+|||+.++.+.+.+
T Consensus 17 q~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 17 QEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred cHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3565443 3556777778888899999999999999999987654
No 135
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.30 E-value=0.38 Score=49.73 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|.|.|||||||-+|.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998884
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.23 E-value=0.48 Score=52.96 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=26.2
Q ss_pred HHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 244 AIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 244 Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
........ +-+..++++|++|+|||+.++.+.+.+
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 34444433 346788889999999999999998765
No 137
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.10 E-value=0.54 Score=40.12 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
..+|+|++|||||+..-.+.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999877664433
No 138
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.97 E-value=0.61 Score=55.59 Aligned_cols=55 Identities=29% Similarity=0.399 Sum_probs=38.6
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
..+|+-+... .+|+-..-.+|+ ...+-+|+++++|..|.|||++++.+-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3456554432 577654333332 234568999999999999999999999988654
No 139
>PRK14527 adenylate kinase; Provisional
Probab=87.97 E-value=0.4 Score=49.66 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=24.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.+.+-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999987764
No 140
>PRK04040 adenylate kinase; Provisional
Probab=87.93 E-value=0.45 Score=49.53 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999999988883
No 141
>PRK08727 hypothetical protein; Validated
Probab=87.85 E-value=0.8 Score=49.25 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
....+.|+|.|+||+|||+.+..+...++..+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 44557899999999999999999988877643
No 142
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.85 E-value=0.43 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999988764
No 143
>PRK07667 uridine kinase; Provisional
Probab=87.81 E-value=0.74 Score=47.96 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=23.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46679999999999999999988865
No 144
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=87.78 E-value=0.33 Score=50.88 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=30.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhh-H----HHHhhcCc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTN-P----ILEAFGNA 304 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~sn-p----iLEAFGNA 304 (928)
|.|+|.+|||||+.++++-.+=+.+=....+...+++.+ + |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999999977543111111234555566532 3 66677753
No 145
>PRK12608 transcription termination factor Rho; Provisional
Probab=87.77 E-value=0.54 Score=53.96 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 239 aiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577788888887788899999999999999999999888765
No 146
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.73 E-value=0.69 Score=51.43 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
...+.+...+..-.++|+|+.|+|||+.++.+.+.+..
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555555555456999999999999999999888753
No 147
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.64 E-value=0.55 Score=47.62 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=23.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.|+++|+.|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999887653
No 148
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=87.54 E-value=0.83 Score=44.41 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+....|+++|+=|||||+-+|.+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 566899999999999999999998887
No 149
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=87.51 E-value=1 Score=45.15 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
-...=.|+++|+=|||||+-+|-+++.|..
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 356678999999999999999999999974
No 150
>PRK06893 DNA replication initiation factor; Validated
Probab=87.51 E-value=0.9 Score=48.70 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+|.. .+..+.+.+ ....+-+++|.|+||+|||+.+..+-+.++.-
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4543 333333343 34556789999999999999999998887654
No 151
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=87.49 E-value=0.81 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=28.1
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
...+.-.|-++|-||||||+.+..+-+-|...+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 445578999999999999999999988887755
No 152
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.49 E-value=0.41 Score=50.64 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999886543
No 153
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.47 E-value=0.43 Score=53.93 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
...|+|+|.+|||||+.++.++.++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 467999999999999999999988754
No 154
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.45 E-value=0.62 Score=55.23 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=38.4
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 225 EAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 225 ~~Y~~~~~~----~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
++|+-+... ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 456544432 5776643 44544444 47889999999999999999999998653
No 155
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.40 E-value=0.51 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999998887754
No 156
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=87.35 E-value=0.45 Score=48.92 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.-|||+|.||||||+.++.+++-+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4699999999999999999988653
No 157
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=87.33 E-value=0.45 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|++|||||+..|.|+-
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999888764
No 158
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=87.17 E-value=0.58 Score=47.23 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
|.|.|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 159
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=87.16 E-value=0.3 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (928)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999988877654
No 160
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.14 E-value=0.49 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
.|++.|++|+|||+.++.+.+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998877
No 161
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=87.12 E-value=0.46 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999886544
No 162
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=87.12 E-value=0.46 Score=51.13 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+..+.=|.||||||||+.++.++-+...-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCC
Confidence 456888999999999999999998776553
No 163
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=87.10 E-value=0.46 Score=50.08 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886543
No 164
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=87.06 E-value=0.45 Score=53.95 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999987544
No 165
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.03 E-value=0.48 Score=48.35 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa 279 (928)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988774
No 166
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=87.00 E-value=0.45 Score=52.95 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCChhHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~i 274 (928)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 167
>PRK06761 hypothetical protein; Provisional
Probab=86.91 E-value=0.45 Score=52.75 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=23.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 168
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.87 E-value=0.5 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999886544
No 169
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=86.87 E-value=0.48 Score=50.12 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.+.+.+.|.|+||||||+..|.|+..+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4568899999999999999999876553
No 170
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=86.85 E-value=0.52 Score=52.05 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=22.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
-+-|+|+|+||+||||++=-+++-=..+
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rghrL 172 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRGHRL 172 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhccce
Confidence 4679999999999999998887754443
No 171
>PRK00698 tmk thymidylate kinase; Validated
Probab=86.83 E-value=0.68 Score=47.98 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988543
No 172
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=86.78 E-value=0.51 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887554
No 173
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=86.75 E-value=0.37 Score=57.52 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++-.+.=|.||||||||+.+|.|+..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567778999999999999999887755
No 174
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=86.68 E-value=0.43 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45789999999999999888775443
No 175
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=86.63 E-value=0.48 Score=53.66 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999999987654
No 176
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=86.62 E-value=0.49 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (928)
---+.++|.||||||+..|+|+.-
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999998653
No 177
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=86.60 E-value=0.53 Score=48.62 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=31.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHH-HhccCCCCchhhhhhhh-----HHHHhhc
Q 002395 257 IIISGESGAGKTETAKIAMQYL-AALGGGSGIEYEILKTN-----PILEAFG 302 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL-a~~~~~~~i~~~il~sn-----piLEAFG 302 (928)
|.|+|-.|||||+.++++-+.. +.+=....+..+++..+ .|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHC
Confidence 7899999999999999876654 22222234555666543 3788888
No 178
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.58 E-value=0.64 Score=51.54 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+...|+|.|.+|+|||+++..+..|++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998764
No 179
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.56 E-value=0.39 Score=53.87 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...|+|+|.+|||||+..+.++.++-
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 47999999999999999999887763
No 180
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=86.54 E-value=0.52 Score=49.69 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887554
No 181
>PRK08356 hypothetical protein; Provisional
Probab=86.49 E-value=0.47 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCChhHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~ 276 (928)
--|+|+|.+|||||+.++.+-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998843
No 182
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=86.47 E-value=0.54 Score=49.94 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998776
No 183
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=86.44 E-value=0.83 Score=54.79 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 234 ~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+|+...-..| +...+-.|+++++|+.|.|||++++.+.+.|-+.
T Consensus 26 q~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46665433332 2345568999999999999999999999998653
No 184
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.42 E-value=1 Score=48.05 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCc--eeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 240 ITDTAIREMIRDEV--NQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 240 iA~~Ay~~m~~~~~--~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.|-.|-+.+..... -..++|.|+||+|||+..+.+..++...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34455555555432 3579999999999999888888777654
No 185
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=86.40 E-value=0.86 Score=55.10 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.+....+|.|+|.||+|+|||..++.+.++.-
T Consensus 80 al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 80 ALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556789999999999999999999987643
No 186
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=86.35 E-value=0.91 Score=46.63 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999988853
No 187
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=86.30 E-value=0.48 Score=53.76 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456899999999999999999987554
No 188
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=86.30 E-value=0.54 Score=49.02 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.++-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 346889999999999999998886543
No 189
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=86.29 E-value=0.41 Score=57.20 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=26.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+-+..=|-||||||||+++..||.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 345788899999999999999999998764
No 190
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=86.26 E-value=0.54 Score=49.32 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988886543
No 191
>PRK08116 hypothetical protein; Validated
Probab=86.26 E-value=1.2 Score=49.14 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 235 PHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+.++.|..--.+.... ..+..++|.|++|+|||..+..|.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44555555444444322 345679999999999999999999999765
No 192
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.22 E-value=0.87 Score=54.19 Aligned_cols=52 Identities=27% Similarity=0.525 Sum_probs=37.2
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 225 EAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 225 ~~Y~~~~~~----~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++|+.+... ++|+ ....+.++..+ -++++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456554432 5776 33455555544 4588999999999999999999887754
No 193
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=86.21 E-value=0.52 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 457899999999999999999987544
No 194
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.17 E-value=0.58 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999886544
No 195
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.16 E-value=0.75 Score=56.26 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHHHH-cCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 245 IREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 245 y~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
..+++. .+-.|++|++|.+|.|||++++.+.+.|-+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 444443 4568999999999999999999999998654
No 196
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.16 E-value=0.38 Score=57.86 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++.+.|.|.|+||||||+..|.++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999877643
No 197
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.10 E-value=0.56 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999886543
No 198
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.07 E-value=1 Score=51.55 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 240 ITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 240 iA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
-|...+..+... +-+++++|+|+.|.|||+.++.+.++|.+
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 344566666554 45899999999999999999999999876
No 199
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.95 E-value=0.44 Score=50.83 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.|.|+||||||+..|.|...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998865543
No 200
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=85.94 E-value=1.1 Score=47.00 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=31.0
Q ss_pred HHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.|++.++. ..++.++|.|..|+|||++.+.+.+.+...
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 45555554 457889999999999999999999988874
No 201
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.92 E-value=0.59 Score=50.61 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46899999999999999999998754
No 202
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.92 E-value=1.1 Score=46.15 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 245 IREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 245 y~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
++++... +-++++++.|+.|.|||+.++.+.+.|..-
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4455544 457999999999999999999999998753
No 203
>PRK15453 phosphoribulokinase; Provisional
Probab=85.89 E-value=0.67 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.=-|.|+|-||||||+.++.+.+-|
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999998876544
No 204
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.88 E-value=0.94 Score=54.74 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=38.3
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++|+-.... .+|+... ..+++.. +-.+++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~----L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNS----LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556554432 5777654 3344444 55788999999999999999999999865
No 205
>PRK03839 putative kinase; Provisional
Probab=85.87 E-value=0.63 Score=47.58 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|.|-+|||||+.++.+-+-+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997776
No 206
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=85.86 E-value=0.7 Score=50.48 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
..-.+++.|++|+|||+.++.+-+.|...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999886543
No 207
>PRK14528 adenylate kinase; Provisional
Probab=85.85 E-value=0.69 Score=47.95 Aligned_cols=24 Identities=46% Similarity=0.632 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (928)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999998776
No 208
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.83 E-value=0.84 Score=40.42 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=23.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~ 281 (928)
|+++|..|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999874
No 209
>PRK14974 cell division protein FtsY; Provisional
Probab=85.80 E-value=1.3 Score=50.34 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=27.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
+++..|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999887643
No 210
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=85.78 E-value=0.59 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (928)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999997765
No 211
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=85.77 E-value=0.62 Score=49.18 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998887543
No 212
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.72 E-value=0.49 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
--.+-+.||||||||.|+.-||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 3567889999999999999999999873
No 213
>PRK14531 adenylate kinase; Provisional
Probab=85.68 E-value=0.72 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
|-|+|.|.+|||||+.++.+-+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 214
>PLN03025 replication factor C subunit; Provisional
Probab=85.68 E-value=1.1 Score=50.47 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.3
Q ss_pred HHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..+.+...+.-.+++++|++|+|||+.++.+.+.|..
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3556666666678999999999999999999988743
No 215
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=85.65 E-value=0.56 Score=49.27 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999999885443
No 216
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=85.62 E-value=0.87 Score=46.21 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
+.|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999887643
No 217
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=85.57 E-value=0.58 Score=53.01 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+-|.||||||||+..|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999997755
No 218
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.56 E-value=0.65 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+ +.+.|.|++|||||+..|.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999886544
No 219
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=85.41 E-value=0.64 Score=49.78 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998886443
No 220
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.40 E-value=0.63 Score=49.80 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999999887544
No 221
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=85.38 E-value=0.78 Score=46.93 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999865
No 222
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=85.36 E-value=0.61 Score=49.04 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=31.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhh-----hHHHHhhcCc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKT-----NPILEAFGNA 304 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~s-----npiLEAFGNA 304 (928)
.|.|+|.+|||||+.++++..+=+.+=....+...++.. ..|.+.||..
T Consensus 3 ~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~ 56 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDD 56 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 589999999999999999876311111122344445442 3567777763
No 223
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.35 E-value=0.55 Score=53.85 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.9
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
-++.|++=|.||||||||+.-..+++-+.+-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3678999999999999999999998877553
No 224
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.35 E-value=0.68 Score=51.29 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=48.7
Q ss_pred hhcCccccccCCeEEEecCCCCCCCCCHHHHHHhhcCC--------CCCCchhHHHHHHHHHHHHcCceeEEEEeCCCCC
Q 002395 194 YKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKS--------IESPHVYAITDTAIREMIRDEVNQSIIISGESGA 265 (928)
Q Consensus 194 y~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~--------~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGA 265 (928)
-.-|--|+..|.-=+-||-|+...-|+- .++--+ ..-|-|+ +. +....+--|+++|..||
T Consensus 69 ~E~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~-------~~-~~~~~~GLILVTGpTGS 136 (353)
T COG2805 69 GELDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIV-------RE-LAESPRGLILVTGPTGS 136 (353)
T ss_pred cceeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHH-------HH-HHhCCCceEEEeCCCCC
Confidence 3457778988888888888875432210 000000 0124443 22 22355678999999999
Q ss_pred ChhHHHHHHHHHHHh
Q 002395 266 GKTETAKIAMQYLAA 280 (928)
Q Consensus 266 GKTe~~K~il~yLa~ 280 (928)
|||+|.-.++.|+-.
T Consensus 137 GKSTTlAamId~iN~ 151 (353)
T COG2805 137 GKSTTLAAMIDYINK 151 (353)
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999999955
No 225
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.32 E-value=1.5 Score=48.35 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHH---------cCceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 236 HVYAITDTAIREMIR---------DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 236 HifaiA~~Ay~~m~~---------~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.+..+..++++.++. .++.+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 345555666665542 23468999999999999999999988887543
No 226
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=85.28 E-value=0.67 Score=48.51 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999886443
No 227
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=85.28 E-value=1.6 Score=52.73 Aligned_cols=101 Identities=31% Similarity=0.378 Sum_probs=61.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC--Cc---h-hhhh---hhhHHHHhhcC------cccCCCCCCCCcc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GI---E-YEIL---KTNPILEAFGN------AKTSRNDNSSRFG 316 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~--~i---~-~~il---~snpiLEAFGN------AkT~rN~NSSRFG 316 (928)
..||-+||-||+|||||+ .|=|||+..+-.+ .| + .+|- -|.-|=|..|+ .=|+|=++++ +
T Consensus 64 e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~t--s 138 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDST--S 138 (674)
T ss_pred HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccC--C
Confidence 458999999999999996 5789998765322 11 1 2332 25567777776 2233322222 2
Q ss_pred cEEEEEEcCCCCeeceeeeeeecCceeeee-cCCCCCcchhh
Q 002395 317 KLIEIHFSETGKISGANIQTFLLEKSRVVQ-CAEGERAYHIF 357 (928)
Q Consensus 317 K~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~-q~~gERNfHIF 357 (928)
+=++|-|=.+|-+.-=-+..=+|+|-=|+- -...||+-|.=
T Consensus 139 ~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922|consen 139 KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred CceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHH
Confidence 245555555665555455555688855554 44579988853
No 228
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=85.27 E-value=0.88 Score=43.66 Aligned_cols=26 Identities=46% Similarity=0.747 Sum_probs=23.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
|+++|.+|+|||+.+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 229
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=85.25 E-value=0.64 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999998886543
No 230
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=85.21 E-value=0.79 Score=48.43 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=35.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFG 302 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~snpiLEAFG 302 (928)
+=.|+|.|.=|+|||+.++.+-++|-+ .+..++.+-||+|+-|=
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~-----~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF-----KVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC-----ceeeecccCChHHHHHH
Confidence 457999999999999999999998853 34455666778888774
No 231
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=85.17 E-value=0.67 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (928)
.-.|+|.|+||+||||++--+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 367899999999999999888876
No 232
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=85.15 E-value=0.69 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998854
No 233
>PLN02318 phosphoribulokinase/uridine kinase
Probab=85.15 E-value=1 Score=54.53 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=34.1
Q ss_pred CchhHHHHHHHHHHHHcC-ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 235 PHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
-|=|-++-+|-+-+..+. ..--|-|.|.||||||+.++.|+..+
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 456677778877766533 34678899999999999999998765
No 234
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.99 E-value=0.7 Score=48.88 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|++|||||+..|.|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999998864
No 235
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.99 E-value=1 Score=54.34 Aligned_cols=52 Identities=25% Similarity=0.480 Sum_probs=37.3
Q ss_pred HHhhcCCC----CCCchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 225 EAYKSKSI----ESPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 225 ~~Y~~~~~----~~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++|+-+.. +.+|+-. +..++... +-.+++|++|+.|.|||+.++.+.+.|-.
T Consensus 8 ~k~rP~~f~divGq~~v~~----~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVR----ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHH----HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45554432 2567654 34444444 56788999999999999999999999854
No 236
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=84.94 E-value=0.7 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..|.|.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999998854
No 237
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=84.91 E-value=0.66 Score=49.53 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 356889999999999999999886433
No 238
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.91 E-value=0.71 Score=48.39 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|++|||||+..|.|.-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999988643
No 239
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.90 E-value=0.69 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999887665
No 240
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=84.90 E-value=0.57 Score=57.04 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=25.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++.|.+.|.|+||||||+..|.|+..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46799999999999999999999887644
No 241
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.89 E-value=0.96 Score=51.10 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=27.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
+..+.|.+.|.+|||||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999987643
No 242
>PRK10646 ADP-binding protein; Provisional
Probab=84.89 E-value=1.7 Score=43.92 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.-.|++.|+-|||||+-+|.+++.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999988873
No 243
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=84.86 E-value=0.62 Score=58.02 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
...|.|-|.|+||||||+.+|+++..+.-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34688999999999999999999876644
No 244
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=84.85 E-value=1.7 Score=51.04 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHH
Q 002395 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 237 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
++.+.-+|...++.-.+.|-+.|.|.||+|||+..+.++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 4555666777777778899999999999999999888875
No 245
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=84.84 E-value=0.7 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999988643
No 246
>PRK13768 GTPase; Provisional
Probab=84.83 E-value=0.84 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.|+|+|.+|+|||+.++.+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998754
No 247
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=84.83 E-value=0.89 Score=49.02 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 240 ITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 240 iA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+.+++|..|... ..+.+-.+.|++|+||||++|.+-+.|..
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 567888877542 55788899999999999999998776653
No 248
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=84.82 E-value=0.69 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999998887764
No 249
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=84.82 E-value=0.71 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 250
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.81 E-value=0.96 Score=54.28 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 234 ~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
..|+.+.-..+.. ..+-.++++++|++|+|||+.++.+.+.|...
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4666443333322 34557889999999999999999999988653
No 251
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=84.80 E-value=0.79 Score=50.89 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=24.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.|++.|++|+|||+.++.+-+++...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 599999999999999999999998754
No 252
>PRK10436 hypothetical protein; Provisional
Probab=84.77 E-value=0.67 Score=54.93 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=27.5
Q ss_pred HHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++.+.. ...=-|+|+|..|||||++...+|.++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 3555543 23457999999999999999999988754
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=84.74 E-value=0.74 Score=46.69 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.|.|++|||||+..+.++-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578899999999999999999876553
No 254
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.71 E-value=0.7 Score=48.28 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999988543
No 255
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=84.67 E-value=0.72 Score=49.30 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
..+.+.|.|+||||||+..|.|+-.+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999876553
No 256
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=84.67 E-value=1.1 Score=50.08 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=25.4
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+=.|+|+|-||||||+.++.+.++|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999888
No 257
>PRK10908 cell division protein FtsE; Provisional
Probab=84.63 E-value=0.73 Score=48.78 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999999988643
No 258
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.61 E-value=0.76 Score=46.81 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999988887543
No 259
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.58 E-value=0.75 Score=48.31 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
.+.+.+.|.|+||||||+..+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999888653
No 260
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=84.52 E-value=0.73 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999999886443
No 261
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=84.50 E-value=0.66 Score=48.42 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=26.7
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+..+..++|+|.|..|+|||...+.+++.+
T Consensus 12 ~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 12 KELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344555678999999999999999999998877
No 262
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=84.50 E-value=0.74 Score=48.60 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..+.|+-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999988643
No 263
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=84.49 E-value=0.72 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988654
No 264
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=84.48 E-value=0.96 Score=46.68 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=25.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
...+.++|.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999988873
No 265
>PRK00023 cmk cytidylate kinase; Provisional
Probab=84.48 E-value=0.79 Score=49.11 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=23.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+-.|.|+|.+|||||+.++.+.+.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998884
No 266
>PRK02496 adk adenylate kinase; Provisional
Probab=84.47 E-value=0.81 Score=46.97 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|.|.+|||||+.++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998776
No 267
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=84.28 E-value=0.75 Score=48.93 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999887554
No 268
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=84.27 E-value=0.78 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999888543
No 269
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=84.24 E-value=0.66 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999998855
No 270
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=84.21 E-value=0.79 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988886443
No 271
>PLN02796 D-glycerate 3-kinase
Probab=84.17 E-value=0.78 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
=-|-|+|.||||||+.++.|...|.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3488999999999999998877764
No 272
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=84.17 E-value=0.78 Score=48.73 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999999886544
No 273
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=84.13 E-value=0.76 Score=47.01 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (928)
--.|.|+|.||+|||+..|.+-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHh
Confidence 46799999999999998877643
No 274
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=84.05 E-value=0.82 Score=47.99 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887544
No 275
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.05 E-value=1.2 Score=54.47 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=38.9
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++|+-+... .+|+-. .++++...+ -.+++|++|+.|.|||++++.+.+.|.+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~----~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKA----ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3566654432 577743 344555554 4899999999999999999999999865
No 276
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.98 E-value=0.78 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457999999999999999999886543
No 277
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.97 E-value=0.81 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAM 275 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (928)
+..+.+.|.|+||||||+..+-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 567899999999999999974333
No 278
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=83.93 E-value=0.81 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999988653
No 279
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=83.89 E-value=0.79 Score=48.92 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988886544
No 280
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=83.87 E-value=0.79 Score=49.57 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999987543
No 281
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=83.83 E-value=0.81 Score=49.81 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346889999999999999999987544
No 282
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=83.81 E-value=0.74 Score=48.61 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=29.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhh-----hHHHHhhcCc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKT-----NPILEAFGNA 304 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~s-----npiLEAFGNA 304 (928)
-|.|+|.+|||||+.++++..+=+.+=....+..+++.. ..+...||..
T Consensus 7 ~igitG~igsGKSt~~~~l~~~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~ 60 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKD 60 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHH
Confidence 467899999999999998877422211122333444321 2456667654
No 283
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.80 E-value=1.3 Score=54.26 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=37.5
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 225 EAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 225 ~~Y~~~~~~----~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
++|+-.... ..|+-..-..++ ...+..+++|++|++|.|||+.++.+.++|.+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455544332 466654333333 234567999999999999999999999999654
No 284
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.78 E-value=1.3 Score=54.62 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.5
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..+.....++.|+|.||+|+|||+.++.+......
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567899999999999999999999877543
No 285
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=83.77 E-value=1.3 Score=48.43 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=30.2
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
|++=.+-+++.+.+. .++.|++.|++|+|||+.++.+-+.+
T Consensus 5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 455555566655554 35789999999999999999886543
No 286
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=83.76 E-value=0.88 Score=48.37 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.|.|+||||||+..|.|...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 5679999999999999999998876553
No 287
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.73 E-value=0.86 Score=47.32 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+..+.+.|.|++|||||+..+.|+--+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999998886543
No 288
>PRK13695 putative NTPase; Provisional
Probab=83.70 E-value=0.94 Score=46.11 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~ 280 (928)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888764
No 289
>PRK04195 replication factor C large subunit; Provisional
Probab=83.67 E-value=1.1 Score=53.58 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 337899999999999999999998876
No 290
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=83.67 E-value=0.93 Score=47.37 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.++|.|.||||||...+.++.-|+..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 69999999999999999998888774
No 291
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.64 E-value=1.1 Score=49.96 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHHHHHc------CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 235 PHVYAITDTAIREMIRD------EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~------~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
-|++.-|..|..--... .-|--|++.|+.|.|||..||.+-|.|.-.
T Consensus 152 ~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 152 ERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 45666666654332221 247889999999999999999999999653
No 292
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=83.62 E-value=0.96 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+.|+|+|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 293
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=83.62 E-value=1.1 Score=52.95 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHc-----CceeEEEEeCCCCCChhHHHH
Q 002395 236 HVYAITDTAIREMIRD-----EVNQSIIISGESGAGKTETAK 272 (928)
Q Consensus 236 HifaiA~~Ay~~m~~~-----~~~QsIiisGESGAGKTe~~K 272 (928)
||=.-.+.-+...+.+ .+.+.|.|.|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4444445555555554 678999999999999999998
No 294
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.60 E-value=0.85 Score=47.82 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998886543
No 295
>PF13173 AAA_14: AAA domain
Probab=83.57 E-value=1 Score=43.49 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
++.++|.|..|+|||+.++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.55 E-value=0.84 Score=47.15 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.....+.|.|+||||||+..|.+.-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999998876553
No 297
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.54 E-value=1.4 Score=51.45 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=37.6
Q ss_pred CCCHHHHHHhhcCC-CC-CCchhHHHHHHHHHHHHc-----------CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 218 LYGNYYIEAYKSKS-IE-SPHVYAITDTAIREMIRD-----------EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 218 iY~~~~~~~Y~~~~-~~-~PHifaiA~~Ay~~m~~~-----------~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+.+++.+..+-+.. .+ .+-+=+++..+|.++.+- ....+|++.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 55676666665432 12 233334444444433221 124789999999999999999986654
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.52 E-value=0.89 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAM 275 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (928)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345778999999999999999874
No 299
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.52 E-value=0.85 Score=49.47 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
..+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999886544
No 300
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.52 E-value=0.79 Score=50.78 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999987654
No 301
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.48 E-value=0.86 Score=48.68 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346889999999999999999886443
No 302
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.45 E-value=1.1 Score=47.16 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
++.|++.|.+|+|||+++-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999988887777654
No 303
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=83.40 E-value=0.86 Score=48.91 Aligned_cols=26 Identities=38% Similarity=0.426 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|++|||||+..+.|+--
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999998643
No 304
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=83.38 E-value=0.91 Score=50.66 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (928)
...++|+|+||+||||++--+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999888876
No 305
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.32 E-value=0.91 Score=47.50 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.....+.|.|++|||||+..|.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788999999999999999887544
No 306
>PRK09087 hypothetical protein; Validated
Probab=83.32 E-value=1.5 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~ 276 (928)
.+..++|.|+||+|||+.+..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999988886554
No 307
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.30 E-value=0.88 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.|+||||||+..+.|.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456889999999999999998886543
No 308
>PRK06620 hypothetical protein; Validated
Probab=83.30 E-value=1.6 Score=46.46 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=18.0
Q ss_pred eEEEEeCCCCCChhHHHHHH
Q 002395 255 QSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~i 274 (928)
.+++|.|++|+|||+.++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888864
No 309
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.27 E-value=0.92 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
.+.+.+.|.|+||||||+..+.|+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999999988643
No 310
>PRK14530 adenylate kinase; Provisional
Probab=83.17 E-value=0.96 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa 279 (928)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999988773
No 311
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=83.17 E-value=1 Score=48.05 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa 279 (928)
.|.|.|.||||||+.+|.+.+.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987664
No 312
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.13 E-value=1.5 Score=53.51 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=39.5
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHH-cCceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.++|+-.... .+|+- ..++++.. .+-.++++++|+.|.|||+.++.+.+.|.+..
T Consensus 7 ~~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3556544432 46654 34444543 46689999999999999999999999986543
No 313
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.09 E-value=1.4 Score=54.11 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=37.7
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 225 EAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 225 ~~Y~~~~~~----~PHifaiA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++||-+... .+|+ -++..++...+ -.+++|++|..|.|||++++.+.+.|-+
T Consensus 7 rKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456544432 5776 34455555544 4789999999999999999999998865
No 314
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=83.06 E-value=0.9 Score=48.39 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|++|||||+..|.|.-.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999988654
No 315
>PRK13947 shikimate kinase; Provisional
Probab=83.05 E-value=1.1 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999987765
No 316
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.05 E-value=0.91 Score=49.66 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999987643
No 317
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=83.03 E-value=0.95 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999998886544
No 318
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=83.02 E-value=0.94 Score=48.20 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|.+|||||+..+.|+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999888653
No 319
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=83.02 E-value=0.9 Score=49.61 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346889999999999999999987654
No 320
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=82.99 E-value=0.9 Score=48.09 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999988886543
No 321
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.96 E-value=0.94 Score=47.00 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4568899999999999999988863
No 322
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.94 E-value=0.87 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
.=-|+|+|+.|||||++...+|+++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 45688999999999999999998874
No 323
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.92 E-value=0.93 Score=48.95 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456889999999999999999987544
No 324
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=82.92 E-value=1.5 Score=48.75 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+..+.+++.|++|+|||+.++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999887655
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.90 E-value=1.7 Score=46.77 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+...++|.|++|+|||+.+..++.-++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999997555554544
No 326
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=82.89 E-value=0.96 Score=47.23 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|+-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999998886543
No 327
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=82.89 E-value=1.3 Score=56.18 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=25.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.|-.++|.|.||||||.+++.++..+...+
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~~~g 458 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNLSRG 458 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 356799999999999999999987766544
No 328
>PF13479 AAA_24: AAA domain
Probab=82.88 E-value=0.82 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=18.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i 274 (928)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999876655
No 329
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=82.86 E-value=0.99 Score=46.27 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.|.||||||+..+.|.-.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988886544
No 330
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=82.83 E-value=1.5 Score=50.22 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.8
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
-+..-..|+|+|++|+|||+.++.+-+|+-.
T Consensus 34 ~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 34 IDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3445578999999999999999999999875
No 331
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.82 E-value=0.96 Score=53.44 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
...++.++... .==|+++|..|||||+|..-++++|-.
T Consensus 247 ~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 247 LARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 34555555332 445789999999999999999999866
No 332
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=82.76 E-value=1.5 Score=49.19 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 237 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+..+.+.-+.....-+...+|+++|-+|||||+.++.+.+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334444333333444678899999999999999999987765
No 333
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.67 E-value=1.3 Score=48.77 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 240 iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++.....+.+.+.-++++|.|.+|||||+..+.+...+..
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 34555555555555589999999999999999998776643
No 334
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=82.65 E-value=1 Score=47.59 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999998886543
No 335
>PLN02348 phosphoribulokinase
Probab=82.65 E-value=1.6 Score=50.49 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++.--|-|+|-||||||+.++.|.+.|-.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44456669999999999999999888743
No 336
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=82.62 E-value=0.94 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..|.|.-
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999888753
No 337
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=82.60 E-value=0.89 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i 274 (928)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999875544
No 338
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.59 E-value=0.98 Score=47.98 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...|.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456899999999999999999886544
No 339
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=82.59 E-value=0.95 Score=48.94 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999888876543
No 340
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.58 E-value=1.2 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
..+|+|+|+.|||||+..+.+|.++=
T Consensus 143 ~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 58899999999999999999998874
No 341
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=82.53 E-value=0.99 Score=48.38 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999987654
No 342
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.52 E-value=1 Score=46.34 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888875444
No 343
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=82.50 E-value=0.97 Score=47.58 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999986544
No 344
>PRK09099 type III secretion system ATPase; Provisional
Probab=82.49 E-value=3.4 Score=48.77 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 240 iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
..-.+...++.-.+.|.+.|.|.||+|||+..+.+...
T Consensus 149 TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 149 TGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33445666666678999999999999999998777543
No 345
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=82.45 E-value=1.3 Score=46.29 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=31.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh--ccCCCCchhhhhhh-----hHHHHhhcCc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAA--LGGGSGIEYEILKT-----NPILEAFGNA 304 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~--~~~~~~i~~~il~s-----npiLEAFGNA 304 (928)
|.|+|..|||||+.++++-+.+.. +. ...+...++.. ..+.+.||..
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~-~D~~~~~~~~~~~~~~~~l~~~fg~~ 57 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILD-ADIYAREALAPGSPILKAILQRYGNK 57 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEee-CcHHHHHHHhcCchHHHHHHHHhCHH
Confidence 889999999999999998776421 21 22344444432 3567788873
No 346
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.42 E-value=1.8 Score=50.39 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 244 AIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 244 Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..++++.. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46666665 56789999999999999999999998865
No 347
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=82.39 E-value=0.59 Score=45.81 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=20.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
..+..|+|+||.|+||+..++.|-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56788999999999999988766443
No 348
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=82.32 E-value=1 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.--+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467999999999999999988875433
No 349
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.31 E-value=1.6 Score=52.47 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=39.6
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHH-cCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++|+-+... .+||-. +.++++. .+-+++++++|+.|.|||++++.+.+.|-+
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567655432 577644 4555554 466899999999999999999999999865
No 350
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=82.30 E-value=1.2 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..|.|+|..|||||+..+.+++.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 36899999999999999999987754
No 351
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=82.30 E-value=2.4 Score=48.23 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=28.2
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+..-.|-|+|.+|||||+.+..+..+|...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6778899999999999999999999999764
No 352
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=82.29 E-value=0.86 Score=55.29 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+..+.|.|.|+||||||+..|.++..+..-
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~ 385 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPD 385 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 567999999999999999999998777543
No 353
>PRK06526 transposase; Provisional
Probab=82.29 E-value=1.2 Score=48.80 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+.+.++|.|.+|+|||+.+..|...++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45679999999999999999998887764
No 354
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.28 E-value=1 Score=47.82 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i 274 (928)
+-.-++|.|.||||||+..+.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4577899999999999877655
No 355
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=82.28 E-value=1 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998886544
No 356
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.26 E-value=1 Score=49.36 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999998886543
No 357
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.25 E-value=1 Score=48.46 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34688999999999999999888653
No 358
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=82.25 E-value=1.3 Score=45.76 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..-|+|.|-.|||||+.++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999888754
No 359
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=82.23 E-value=1.1 Score=46.61 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998876533
No 360
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=82.20 E-value=1 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999999887555
No 361
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.19 E-value=0.8 Score=50.01 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=27.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhccC
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 283 (928)
...+.+.|.|+||||||+..|.|+-.+..-+|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 56789999999999999999999888765433
No 362
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=82.13 E-value=1 Score=48.69 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988885433
No 363
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.13 E-value=1.1 Score=48.30 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..|.|.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999888854
No 364
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.11 E-value=1 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456889999999999999988886543
No 365
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.11 E-value=1.3 Score=41.50 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.++|.|+.|+|||..+-.++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 47999999999999999999988765
No 366
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=82.06 E-value=1.1 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999886544
No 367
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=82.04 E-value=1.2 Score=46.50 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=22.3
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
....+..|++.|..|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346789999999999999999988876653
No 368
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=82.04 E-value=0.93 Score=47.29 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=31.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhh-----hHHHHhhcCc
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKT-----NPILEAFGNA 304 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~s-----npiLEAFGNA 304 (928)
.-|.|+|-+|||||+.++++-++=+.+=....+-.+++.. .-|.+.||..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~ 57 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPE 57 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHH
Confidence 4699999999999999998877311111112344444431 3467788864
No 369
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=82.00 E-value=0.96 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAM 275 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (928)
...++|+|++|||||+..|.|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999994
No 370
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=81.98 E-value=0.74 Score=56.20 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
++.+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999999999887
No 371
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=81.96 E-value=1 Score=48.97 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999987544
No 372
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=81.96 E-value=1.1 Score=47.54 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887554
No 373
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.95 E-value=1.1 Score=48.64 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456899999999999999999886544
No 374
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=81.94 E-value=1.1 Score=48.38 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999886544
No 375
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=81.93 E-value=0.79 Score=55.99 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+..+.|.|.|+||||||+..|.++..+.-
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p 387 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP 387 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 56789999999999999999999877654
No 376
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=81.92 E-value=1.1 Score=46.62 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888886443
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=81.91 E-value=1.1 Score=45.52 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456889999999999999998887554
No 378
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.90 E-value=1 Score=47.16 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.|.|++|||||+..+.|.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4578999999999999999988865543
No 379
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=81.89 E-value=1.7 Score=46.48 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+...++|+|++|||||..+.+++.-.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5788999999999999999888655444
No 380
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=81.87 E-value=1.1 Score=45.27 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 381
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.82 E-value=1.1 Score=45.41 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999888886544
No 382
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.80 E-value=1.3 Score=45.11 Aligned_cols=54 Identities=30% Similarity=0.390 Sum_probs=40.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceee
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~F~~~g~i~Ga~i 334 (928)
=.|.|||..|+||||.++.+...|..-+ =+-|-|+.-.-...|+-+|-+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g------------------------------~kvgGf~t~EVR~gGkR~GF~I 55 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG------------------------------YKVGGFITPEVREGGKRIGFKI 55 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC------------------------------ceeeeEEeeeeecCCeEeeeEE
Confidence 3599999999999999999999887642 1235555555566788888877
Q ss_pred eeee
Q 002395 335 QTFL 338 (928)
Q Consensus 335 ~~yL 338 (928)
.+..
T Consensus 56 vdl~ 59 (179)
T COG1618 56 VDLA 59 (179)
T ss_pred EEcc
Confidence 7643
No 383
>PRK07429 phosphoribulokinase; Provisional
Probab=81.79 E-value=1.1 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 34567899999999999999887655
No 384
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=81.77 E-value=1.1 Score=48.68 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886544
No 385
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=81.76 E-value=1.1 Score=46.77 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999886544
No 386
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=81.70 E-value=0.81 Score=55.91 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+..|.|.|.|+||||||+..|.++..+.-
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 56799999999999999999999876643
No 387
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=81.66 E-value=1.1 Score=47.20 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999999886554
No 388
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=81.65 E-value=1 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~y 277 (928)
++|+|.+|||||+..+.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 789999999999999987765
No 389
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=81.64 E-value=1.1 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35788999999999999999998653
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=81.63 E-value=1.7 Score=47.01 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=26.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.+.+.++|.|++|+|||..+-.++...+.-+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 4678999999999999999988887776543
No 391
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=81.62 E-value=1.7 Score=45.91 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=28.0
Q ss_pred HHHHHHc--CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 245 IREMIRD--EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 245 y~~m~~~--~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
...|+.. .....++|+|++|+|||+.+.+++..++..
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4445543 345779999999999999999988777643
No 392
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=81.60 E-value=1.4 Score=46.69 Aligned_cols=50 Identities=30% Similarity=0.390 Sum_probs=31.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh-ccCCCCchhhhhhh----hHHHHhhcCc
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA-LGGGSGIEYEILKT----NPILEAFGNA 304 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~-~~~~~~i~~~il~s----npiLEAFGNA 304 (928)
=.|.|+|..|||||+.++++.+.+.. +=....+-.+++.. .-|.+.||..
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 35899999999999999988764422 11112333444432 2467788874
No 393
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=81.60 E-value=0.97 Score=54.94 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=25.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++.+.|.|.|+||||||+..|.++..+.-
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 56899999999999999999999887643
No 394
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=81.58 E-value=1.1 Score=47.81 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|++|||||+..|.|+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998888643
No 395
>PRK05439 pantothenate kinase; Provisional
Probab=81.56 E-value=2.2 Score=48.00 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+.+--|-|+|-+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556778999999999999999988876543
No 396
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.47 E-value=1.1 Score=49.14 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988886543
No 397
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=81.46 E-value=1.1 Score=49.17 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.|.|+||||||+..|.|...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4568899999999999999999987653
No 398
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=81.45 E-value=1.1 Score=48.58 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999886544
No 399
>PRK04328 hypothetical protein; Provisional
Probab=81.44 E-value=1.9 Score=46.93 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=25.3
Q ss_pred HHHHHHcC--ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 245 IREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 245 y~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...|+..+ +..+|+|+|++|||||..+-.++..-+
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34454432 679999999999999998776655433
No 400
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=81.44 E-value=1.2 Score=47.25 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|+--+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998886543
No 401
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.44 E-value=2.4 Score=46.85 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHH
Q 002395 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
|-+=.+.-...-.++-. .++.+++.|++|+|||...+.+++
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhc
Confidence 44333444444444443 378999999999999998877653
No 402
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.38 E-value=1.2 Score=47.14 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886543
No 403
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=81.35 E-value=1.1 Score=49.96 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999987544
No 404
>PRK06921 hypothetical protein; Provisional
Probab=81.32 E-value=2.4 Score=46.70 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
....+++.|++|+|||+.+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4689999999999999999999887765
No 405
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.31 E-value=1.1 Score=49.61 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.|+||||||+..|.|.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999986543
No 406
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=81.30 E-value=1.7 Score=45.36 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+.+.+.|+|++|||||..+..+....+..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~ 39 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ 39 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999987766555543
No 407
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=81.28 E-value=1.6 Score=43.63 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=23.5
Q ss_pred HHHHHHcCceeEEEEeCCCCCChhHHHHHHH
Q 002395 245 IREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (928)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (928)
.+.+....+.-.|+|.|.+|||||+..+.+.
T Consensus 5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 5 LRKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 3444445556779999999999999877663
No 408
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=81.28 E-value=1.2 Score=44.21 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356888999999999999988875443
No 409
>PRK07952 DNA replication protein DnaC; Validated
Probab=81.27 E-value=1.8 Score=47.05 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=26.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.+.++++|.+|+|||+.+..|..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998743
No 410
>PRK13946 shikimate kinase; Provisional
Probab=81.23 E-value=1.2 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
....|++.|-+|||||+..+.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 411
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.22 E-value=1.2 Score=48.07 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34688999999999999998888643
No 412
>PRK05642 DNA replication initiation factor; Validated
Probab=81.22 E-value=2.5 Score=45.52 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
-.++|.|++|+|||+.+..+..++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999888777754
No 413
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.17 E-value=1.2 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..|.|.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999988854
No 414
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.16 E-value=1.8 Score=52.04 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=27.3
Q ss_pred HHHHHHHHcC-ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 243 TAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 243 ~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.... ..+-+|++|.+|+|||++.|.+.+-|.
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444333 356778899999999999999988773
No 415
>PRK01184 hypothetical protein; Provisional
Probab=81.14 E-value=1.1 Score=45.79 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=16.1
Q ss_pred EEEEeCCCCCChhHHHHH
Q 002395 256 SIIISGESGAGKTETAKI 273 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~ 273 (928)
-|+|+|.+|||||+.+++
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999999884
No 416
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.14 E-value=1.1 Score=49.11 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998887543
No 417
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.14 E-value=1.2 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999887654
No 418
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=81.09 E-value=1.2 Score=47.77 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|+-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457899999999999999999987654
No 419
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.08 E-value=1.2 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 356899999999999999999885443
No 420
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=81.07 E-value=2.1 Score=46.10 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+..+++|+|++|||||..+-.++..-+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 579999999999999997766554433
No 421
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=81.06 E-value=1.2 Score=46.45 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
+..+.+.|.|+||||||+..|.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999998887543
No 422
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=81.05 E-value=0.72 Score=47.25 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=21.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
-+-.=|.||||||||+..+.|-..|+-
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccCC
Confidence 356778999999999988777655544
No 423
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=81.04 E-value=1.2 Score=48.37 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887544
No 424
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=81.03 E-value=1.1 Score=48.98 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999999886543
No 425
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.99 E-value=2.4 Score=53.40 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=28.8
Q ss_pred HHHHHHH-cCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 244 AIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 244 Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+++..+. ...+.++.|+|..|.|||.+++.+++-|...
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 3445667899999999999999999988653
No 426
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.95 E-value=1.2 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIA 274 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i 274 (928)
.--|+++.|.||||||+..|.+
T Consensus 36 aGECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHH
Confidence 3579999999999999988776
No 427
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=80.94 E-value=1.2 Score=46.48 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
...+.+.|.|++|||||+..|.|.-.+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4578999999999999999999876543
No 428
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=80.90 E-value=2 Score=53.00 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=39.6
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.++|+-+... .+|+.. +.++++.. +-.+++|++|+.|.|||+.++.+.+.|-+.
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3556544432 577764 45555554 567889999999999999999999988663
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=80.89 E-value=2.1 Score=45.46 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+...++|.|++|+|||+.+..++...+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~ 46 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR 46 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5789999999999999999887765544
No 430
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=80.83 E-value=1.2 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
..+.+.|.|++|||||+..|.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999987544
No 431
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=80.78 E-value=1.2 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..+.|..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3468899999999999999988864
No 432
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=80.78 E-value=1.3 Score=47.61 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886544
No 433
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=80.74 E-value=2.3 Score=43.40 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHH
Q 002395 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (928)
Q Consensus 236 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (928)
|+|.--..++..|--..+.--|+|.|.+|||||+..+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 1 FIFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred ChHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHh
Confidence 3343344566666556667779999999999999877653
No 434
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=80.73 E-value=1.2 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999987554
No 435
>PRK00625 shikimate kinase; Provisional
Probab=80.73 E-value=1.4 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa 279 (928)
-|++.|-.|||||+.+|.+-+.|-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999977763
No 436
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=80.69 E-value=1.3 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457999999999999999998886543
No 437
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=80.68 E-value=1.2 Score=48.50 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886543
No 438
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=80.66 E-value=1.2 Score=48.36 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999998886543
No 439
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=80.66 E-value=1.3 Score=47.04 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999999886544
No 440
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.64 E-value=1.7 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhce
Q 002395 883 IRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYS 919 (928)
Q Consensus 883 aRk~~~~~~~~~~AAi~IQs~~Rg~~~Rr~y~~~r~a 919 (928)
.|++-.+.+++.++|+++|++|||+++|++.+..-++
T Consensus 18 er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 18 ERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444344455566777777777777777766655443
No 441
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.64 E-value=1.3 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..+.|.-.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34688999999999999999988643
No 442
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.63 E-value=1.3 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=20.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|++|||||+..+.|.-
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999998888743
No 443
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=80.63 E-value=1.2 Score=50.96 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (928)
...+.+.|.|+||||||+..|.|.-
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999988854
No 444
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=80.60 E-value=1.2 Score=48.72 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34688999999999999988887643
No 445
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=80.60 E-value=1.3 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|.|-+|||||+.++.|-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987765
No 446
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.49 E-value=2.5 Score=49.26 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
..++|.|.+|+|||+.++.+.+++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 579999999999999999999988764
No 447
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=80.48 E-value=1.3 Score=48.76 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346889999999999999999886543
No 448
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.45 E-value=1.3 Score=47.88 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999987543
No 449
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=80.44 E-value=1.5 Score=48.46 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
.|.|+|.||||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 488999999999999999999998865
No 450
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=80.41 E-value=1.7 Score=47.49 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
+...++|+|++|+|||..+-+++...+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 57889999999999999887776665543
No 451
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.36 E-value=1.2 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (928)
.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999886543
No 452
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=80.34 E-value=1.4 Score=53.73 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=32.8
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 235 PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
|-|.++=.++|.. +.++.-.|+|+|.||||||+.++.+.+.|-.
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 5555555555533 3445669999999999999999999888864
No 453
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.32 E-value=2 Score=54.32 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=38.3
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 225 EAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 225 ~~Y~~~~~~----~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++||-.... ..||-.. +++++.. +-.+++||+|+.|.|||++++.+.+.|-+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~----LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHA----LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHH----HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 556544432 5776643 5555544 56788899999999999999999999865
No 454
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.31 E-value=1.3 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|++|||||+..|.|.-.
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34688999999999999999888644
No 455
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.29 E-value=2.3 Score=48.28 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHHHHH--HcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 243 TAIREMI--RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 243 ~Ay~~m~--~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+|+++. ..+-+++++++|++|.|||+.++.+-+.|.+-
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4566665 45778999999999999999999999988653
No 456
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=80.28 E-value=1 Score=56.40 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
..|.|.|.|+||||||+..|.++..+.-
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4688999999999999999999886643
No 457
>PRK00279 adk adenylate kinase; Reviewed
Probab=80.24 E-value=1.4 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa 279 (928)
-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999987764
No 458
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=80.19 E-value=2.1 Score=52.14 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 234 ~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+|+-..=.+++. ..+-.+++|++|+.|.|||+++|.+.+.|.+.
T Consensus 21 q~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5776654444433 24568899999999999999999999988654
No 459
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.18 E-value=1.4 Score=53.32 Aligned_cols=120 Identities=27% Similarity=0.338 Sum_probs=68.1
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHhccCCC----Cc-h-hhh---hhhhHHHHhhcCcccCCCCCCCCc----cc
Q 002395 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GI-E-YEI---LKTNPILEAFGNAKTSRNDNSSRF----GK 317 (928)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~~~----~i-~-~~i---l~snpiLEAFGNAkT~rN~NSSRF----GK 317 (928)
-++||.|||.||.|||||+ .+-|||..-|-+. ++ + .++ --|-.|-|-.|----..=--|=|| +.
T Consensus 368 ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred HhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 4789999999999999997 4678887654221 11 1 111 113333343321100000122233 22
Q ss_pred EEEEEEcCCCCeeceeeeeeecCceeeeec-CCCCCc--chhhhHhhcCCChhhHhhccC
Q 002395 318 LIEIHFSETGKISGANIQTFLLEKSRVVQC-AEGERA--YHIFYQLCVGAPPALREKLNL 374 (928)
Q Consensus 318 ~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q-~~gERN--fHIFYqll~G~~~~~~~~l~L 374 (928)
-..|-|=.+|.+.--.+..-+|+|-.|+-- ...||. -.|..-||.-+ -..|..|+|
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~-larRrdlKl 503 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKV-LARRRDLKL 503 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHH-HHhhccceE
Confidence 345666677888888888889999777754 446774 45666555422 123455555
No 460
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.14 E-value=1.3 Score=50.07 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.+.+.+.|.|+||||||+..|.|.-.+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467999999999999999999986654
No 461
>PRK13949 shikimate kinase; Provisional
Probab=80.13 E-value=1.5 Score=44.88 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 002395 256 SIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yLa 279 (928)
.|+|.|..|||||+.+|.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999877763
No 462
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=80.10 E-value=1.3 Score=48.01 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 346889999999999999999986644
No 463
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=80.09 E-value=2.9 Score=42.43 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.5
Q ss_pred HcCceeEEEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
..+-+|++|+.|++|+||++.++.+.+.|..-.
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 356799999999999999999999999887644
No 464
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=80.08 E-value=2 Score=53.76 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 234 ~PHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
..|+-.- ....+.+...++..+++|.|++|+|||+.++.+-+.+.
T Consensus 33 Qe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 33 QDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred cHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3555321 35677777888888999999999999999999987653
No 465
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.08 E-value=1.3 Score=48.50 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..+.|.-.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999999988654
No 466
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=80.04 E-value=1.3 Score=48.15 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999998886543
No 467
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.03 E-value=2.1 Score=52.47 Aligned_cols=52 Identities=19% Similarity=0.459 Sum_probs=38.0
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHH-cCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 225 EAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 225 ~~Y~~~~~~----~PHifaiA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
++|+-+... ..|+-. ..++++. .+-.+++|++|+.|.|||++++.+.+.|-+
T Consensus 8 rKYRPqtFddVIGQe~vv~----~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVR----ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHH----HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 556544432 577664 3444444 455788999999999999999999999976
No 468
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=80.02 E-value=1.4 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 002395 257 IIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (928)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999997765
No 469
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.00 E-value=1.3 Score=47.68 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..+.|...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356889999999999999999887543
No 470
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=79.99 E-value=2 Score=44.84 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=24.2
Q ss_pred HHHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.|.+.++.... ..+|.|..|+|||++...++.++
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34444443332 68999999999999999998888
No 471
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=79.96 E-value=1.7 Score=54.98 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhccC
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 283 (928)
.+-.++|.|.||||||+.++.++..+...++
T Consensus 433 ~~~n~~I~G~tGsGKS~~~~~l~~~~~~~~~ 463 (785)
T TIGR00929 433 VLGHTLIFGPTGSGKTTLLNFLLAQMQKYGG 463 (785)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhccCC
Confidence 3788999999999999999999877766543
No 472
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=79.94 E-value=1.4 Score=48.29 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999987544
No 473
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=79.93 E-value=1.4 Score=47.28 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..+.|.-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888643
No 474
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.92 E-value=1.4 Score=47.60 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999999886544
No 475
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.90 E-value=1.4 Score=47.65 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999887554
No 476
>PRK09183 transposase/IS protein; Provisional
Probab=79.90 E-value=1.6 Score=47.77 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+.+.++|.|++|+|||+.+..+...++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999998666554
No 477
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=79.84 E-value=1.3 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34689999999999999998888643
No 478
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=79.81 E-value=2.2 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (928)
.-+|++.|++|+|||+.+|.+-+.|
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3689999999999999999886544
No 479
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=79.77 E-value=1.7 Score=46.17 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+...++|+|++|+|||..+..++..-+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~ 45 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK 45 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh
Confidence 5789999999999999887766543333
No 480
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.75 E-value=1.4 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (928)
..+.+.|.|+||||||+..|.|.-.
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4688999999999999999988643
No 481
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.75 E-value=2.1 Score=49.33 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=33.1
Q ss_pred HHHHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHHhccC
Q 002395 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (928)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa~~~~ 283 (928)
++...++...+-.|+|.|.+|+|||.++|++++-|-..+.
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 3666667777777999999999999999999999877543
No 482
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=79.74 E-value=1.4 Score=48.67 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886433
No 483
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=79.74 E-value=1.6 Score=51.14 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=27.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHhccCC
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAALGGG 284 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~~~~~ 284 (928)
.-|.|-+.|+||||||+.++++.+|+-.-+|+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 45899999999999999999999999765553
No 484
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=79.72 E-value=1.7 Score=44.28 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+.-.||+|++|||||+....|+--|..
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 467899999999999999777555533
No 485
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.71 E-value=1.4 Score=48.63 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988886443
No 486
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=79.66 E-value=2.3 Score=51.34 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=38.1
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHH-HcCceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 224 IEAYKSKSIE----SPHVYAITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 224 ~~~Y~~~~~~----~PHifaiA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
.++|+-.... .+|+-+. .+.++ ..+-.++++++|+.|.|||++++.+.+.|..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~----L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKT----LSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHH----HHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3566655433 5776433 33333 4556889999999999999999999999864
No 487
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=79.62 E-value=1.3 Score=47.95 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|++|||||+..+.|.-.
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999999887643
No 488
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=79.62 E-value=2.3 Score=44.73 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+..+..+.-=.|.++|-.|||||+..+.+++.+.
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455556677899999999999999999998864
No 489
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=79.59 E-value=2.5 Score=47.93 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 243 TAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 243 ~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
.+|+.|... +-+++++++|+.|.|||+.+..+-+.|...
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 456777654 458999999999999999999999998764
No 490
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=79.56 E-value=1.4 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (928)
...+.+.|.|+||||||+..|.|.-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998888543
No 491
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.53 E-value=1.7 Score=50.13 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+...|++.|.+|+|||+++..+...++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877653
No 492
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=79.47 E-value=1.9 Score=43.11 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhcc
Q 002395 257 IIISGESGAGKTETAKIAMQYLAALG 282 (928)
Q Consensus 257 IiisGESGAGKTe~~K~il~yLa~~~ 282 (928)
|.++|.+|||||+.++.+..++...+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g 27 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 78999999999999999998886654
No 493
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=79.44 E-value=1.4 Score=48.19 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888886443
No 494
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=79.42 E-value=1.1 Score=54.44 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+..+.+-|.|+||||||+..+.+++|+-.
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45788889999999999999999999855
No 495
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.39 E-value=1.5 Score=47.51 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457889999999999999988886543
No 496
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=79.37 E-value=1.5 Score=48.00 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 457899999999999999999887543
No 497
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.29 E-value=2.2 Score=52.04 Aligned_cols=44 Identities=27% Similarity=0.460 Sum_probs=33.9
Q ss_pred CCchhHHHHHHHHHHHHc-CceeEEEEeCCCCCChhHHHHHHHHHHHhc
Q 002395 234 SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (928)
Q Consensus 234 ~PHifaiA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yLa~~ 281 (928)
..||-.. .++++.. +-++++|++|+.|.|||++++.+.+.|-+.
T Consensus 18 q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5676654 4444444 567889999999999999999999888653
No 498
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.25 E-value=1.5 Score=47.27 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (928)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456899999999999999999886543
No 499
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=79.24 E-value=1.1 Score=55.98 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=24.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHh
Q 002395 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (928)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yLa~ 280 (928)
+..+.|.|.|+||||||+..|.++..+.-
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35688999999999999999999887654
No 500
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=79.23 E-value=2 Score=48.99 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=25.6
Q ss_pred HHHHHcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 002395 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (928)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yLa 279 (928)
+.+...+ ..|+|+|.+|||||+..+.++.++-
T Consensus 172 ~~~v~~~--~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 172 RAIVAAR--LAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred HHHHhCC--CeEEEECCCCCCHHHHHHHHHccCC
Confidence 3444443 6999999999999999999888764
Done!