Query 002396
Match_columns 928
No_of_seqs 273 out of 546
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 00:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.4E-29 1.8E-33 235.3 14.0 112 65-176 8-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 2.8E-19 9.6E-24 172.6 11.9 99 66-174 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 5.1E-16 1.8E-20 140.7 10.5 96 67-173 7-102 (104)
4 1na6_A Ecorii, restriction end 95.4 0.027 9.3E-07 62.7 8.1 93 67-160 17-123 (404)
5 3cgm_A SLYD, peptidyl-prolyl C 80.6 3.4 0.00012 40.3 7.2 100 149-265 3-110 (158)
6 2k8i_A SLYD, peptidyl-prolyl C 77.6 5.1 0.00017 39.6 7.4 102 149-265 3-114 (171)
7 2kfw_A FKBP-type peptidyl-prol 75.0 2.3 7.9E-05 43.0 4.2 102 149-265 3-114 (196)
8 3iot_A Maltose-binding protein 74.4 0.8 2.7E-05 49.3 0.8 6 139-144 128-133 (449)
9 4dt4_A FKBP-type 16 kDa peptid 70.4 6.7 0.00023 38.9 6.2 106 148-265 24-138 (169)
10 2kr7_A FKBP-type peptidyl-prol 68.1 15 0.00051 35.3 8.0 105 146-265 4-119 (151)
11 3pr9_A FKBP-type peptidyl-prol 54.7 40 0.0014 32.8 8.4 62 193-265 56-123 (157)
12 2jng_A Cullin-7, CUL-7; P53 bi 47.4 17 0.00059 34.1 4.2 69 223-305 10-78 (105)
13 1mhn_A SurviVal motor neuron p 41.3 25 0.00086 28.8 3.9 29 234-265 2-30 (59)
14 3p8d_A Medulloblastoma antigen 40.6 33 0.0011 29.8 4.6 54 234-305 5-58 (67)
15 3qii_A PHD finger protein 20; 40.0 33 0.0011 31.1 4.7 54 234-305 20-73 (85)
16 4a4f_A SurviVal of motor neuro 39.6 27 0.00093 29.1 3.9 55 234-303 7-61 (64)
17 3s6w_A Tudor domain-containing 37.0 27 0.00093 27.9 3.4 28 235-265 1-28 (54)
18 2equ_A PHD finger protein 20-l 36.7 30 0.001 30.2 3.9 39 234-286 8-46 (74)
19 1ix5_A FKBP; ppiase, isomerase 33.1 53 0.0018 31.5 5.3 62 193-265 57-124 (151)
20 1g5v_A SurviVal motor neuron p 32.6 38 0.0013 30.5 3.9 29 234-265 9-37 (88)
21 3m7a_A Uncharacterized protein 32.4 35 0.0012 33.0 4.0 46 109-157 84-140 (140)
22 2e63_A KIAA1787 protein; struc 30.9 30 0.001 34.3 3.3 24 147-170 116-139 (170)
23 3prb_A FKBP-type peptidyl-prol 29.0 1.5E+02 0.0051 30.7 8.2 62 193-265 56-123 (231)
24 3o27_A Putative uncharacterize 26.2 50 0.0017 29.0 3.4 34 141-174 31-65 (68)
25 3pie_A 5'->3' exoribonuclease 25.8 65 0.0022 40.6 5.6 75 220-304 1050-1128(1155)
26 2k75_A Uncharacterized protein 24.4 1.2E+02 0.0041 27.4 5.8 46 108-173 39-88 (106)
27 3pnw_C Tudor domain-containing 23.4 66 0.0023 28.0 3.7 29 234-265 16-44 (77)
28 2yue_A Protein neuralized; str 23.0 58 0.002 32.2 3.7 21 150-170 107-127 (168)
29 3e0e_A Replication protein A; 22.9 2E+02 0.0069 25.4 6.9 47 108-171 39-89 (97)
30 2kbn_A Conserved protein; nucl 22.7 1.8E+02 0.0061 26.4 6.6 70 66-173 16-89 (109)
31 2cbp_A Cucumber basic protein; 22.2 40 0.0014 30.4 2.1 18 144-161 19-36 (96)
32 3pjy_A Hypothetical signal pep 21.8 1.2E+02 0.004 29.2 5.4 46 109-157 70-126 (136)
33 1o7i_A SSB, SSO2364, single st 21.2 2.1E+02 0.0072 26.0 6.8 72 67-172 14-90 (119)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=5.4e-29 Score=235.28 Aligned_cols=112 Identities=32% Similarity=0.520 Sum_probs=103.8
Q ss_pred CCcceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhh
Q 002396 65 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFV 144 (928)
Q Consensus 65 ~~~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FV 144 (928)
++..++|+|+||+|||+++++|+||+++|++|||.++.....++++|.++|.+|++|+|||+||+++++|+|++||+.||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 35778999999999999999999999999999999987666788999999999999999999999899999999999999
Q ss_pred ccCCCCCCCEEEEEEcc--CccEEEEEEeccCCC
Q 002396 145 SGKRLFAGDSVLFIRDE--KQQLLLGIRRANRQP 176 (928)
Q Consensus 145 reKkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~ 176 (928)
++|+|++||+|+|+|.+ ++.|+|+|||+.+..
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999986 467999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.79 E-value=2.8e-19 Score=172.58 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=87.9
Q ss_pred CcceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhc
Q 002396 66 PQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVS 145 (928)
Q Consensus 66 ~~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVr 145 (928)
...++|+|+||+||+.++++|.||+++|++|||..+ .++.++|. |+.|+|+|+|++. ++.|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 345799999999999988899999999999999764 36888888 6999999999974 7999999999999
Q ss_pred cCCCCCCCEEEEEEccCc--cEEEEEEeccC
Q 002396 146 GKRLFAGDSVLFIRDEKQ--QLLLGIRRANR 174 (928)
Q Consensus 146 eKkLvaGDsVVF~R~e~G--eL~VGIRRA~r 174 (928)
+++|++||+|+|...++. .|.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999998765 69999999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.64 E-value=5.1e-16 Score=140.75 Aligned_cols=96 Identities=25% Similarity=0.388 Sum_probs=83.8
Q ss_pred cceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 002396 67 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSG 146 (928)
Q Consensus 67 ~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVre 146 (928)
..+.|.|+|+++|. ..+|.||+++++.+.+.+. .++.++|..|++|+++|.+++ ++++|++||.+||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 34689999999994 4599999999998665443 378999999999999999874 478999999999999
Q ss_pred CCCCCCCEEEEEEccCccEEEEEEecc
Q 002396 147 KRLFAGDSVLFIRDEKQQLLLGIRRAN 173 (928)
Q Consensus 147 KkLvaGDsVVF~R~e~GeL~VGIRRA~ 173 (928)
++|++||.|+|...++..+.|.|.|.+
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECCC
Confidence 999999999999999999999999853
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.44 E-value=0.027 Score=62.66 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=68.5
Q ss_pred cceEEEEEcccccCCCCC----ceeeecchhhhcCCCCCC-CCCCCceEEEE--EecCCCeEEEEEEEeC------CCCc
Q 002396 67 QTEFFCKTLTASDTSTHG----GFSVPRRAAEKIFPPLDF-SMQPPAQELMA--RDLHDNIWTFRHIYRG------QPKR 133 (928)
Q Consensus 67 ~~~~F~KtLTaSDVs~~G----rfsVPkr~AE~~FPpLD~-s~~~psq~Lva--kDl~Gk~W~FRhiyRg------~prR 133 (928)
....|+|.|++.|++.+| +|.+|+..++.+||.|+. ....+...+.+ -|...-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 457899999999998874 799999889999998883 33345555543 4554556699999996 5556
Q ss_pred eeecccch-hhhccCCCCCCCEEEEEEc
Q 002396 134 HLLTTGWS-LFVSGKRLFAGDSVLFIRD 160 (928)
Q Consensus 134 hlLTTGWS-~FVreKkLvaGDsVVF~R~ 160 (928)
|.||. |. .+.--+...+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88863 33 3455577889999999864
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=80.58 E-value=3.4 Score=40.25 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=62.4
Q ss_pred CCCCCEEEEE-Ec-cCccEEEEEEeccCCCCCCCCCccCCCccccchHHHHHHHHhcCCcEEEEEcCCCCC------Ccc
Q 002396 149 LFAGDSVLFI-RD-EKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASP------SEF 220 (928)
Q Consensus 149 LvaGDsVVF~-R~-e~GeL~VGIRRA~r~~~~~~ssv~ssdsm~~gvLaaAa~aaat~spFtV~YyPRas~------sEF 220 (928)
.+.||.|.+. +. .+|+.+-.-+ .. -.+....+ +--+.+|......|..++|.--|.... --+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--------~~-f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--------LS-YLHGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--------EE-EETTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--------EE-EEECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888774 21 5676554332 00 01112222 223556777777888888887665432 347
Q ss_pred eeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 221 VVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 221 VVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
.||++.|.+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 8888887543 46999999985 45552 667899999985
No 6
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=77.58 E-value=5.1 Score=39.57 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=62.6
Q ss_pred CCCCCEEEEE-E--ccCccEEEEEEeccCCCCCCCCCcc-CCCccccchHHHHHHHHhcCCcEEEEEcCCCCCC------
Q 002396 149 LFAGDSVLFI-R--DEKQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRASPS------ 218 (928)
Q Consensus 149 LvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv~-ssdsm~~gvLaaAa~aaat~spFtV~YyPRas~s------ 218 (928)
.+.||.|++. . ..+|+.+-.-+. . .|..+. ....+ +--+.+|..-...|..++|..-|-....
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-~-----~P~~f~lG~g~v-ipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-S-----APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCS-S-----SCEEEETTSCSS-CSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccC-C-----cCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 5678888773 2 347765543321 1 122222 12222 2335667777778888888876654333
Q ss_pred cceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 219 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 219 EFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
-+.||++.|... ..+.+||+|.+ ++++. . +.|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 358899887542 46999999984 55553 3 6899999975
No 7
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=74.99 E-value=2.3 Score=43.03 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCCCEEEEE-E--ccCccEEEEEEeccCCCCCCCCCcc-CCCccccchHHHHHHHHhcCCcEEEEEcCCCC------CC
Q 002396 149 LFAGDSVLFI-R--DEKQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRAS------PS 218 (928)
Q Consensus 149 LvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv~-ssdsm~~gvLaaAa~aaat~spFtV~YyPRas------~s 218 (928)
.+.||.|++. + .++|+++-.-+. . .|..++ ....+ +--+.+|+.-...|..++|+.-|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~-~-----~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV-S-----APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT-T-----SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC-C-----CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688998874 2 357765543321 1 122222 12222 23355666666778888888765433 23
Q ss_pred cceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 219 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 219 EFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
=+.||++.|... ..+.+||+|. +++++. .+.|+|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~--~~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFL--AETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEE--EEETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEE--EECCCC---cEEEEEEEEcC
Confidence 478888887432 3699999996 455552 67899999875
No 8
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=74.38 E-value=0.8 Score=49.30 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.7
Q ss_pred cchhhh
Q 002396 139 GWSLFV 144 (928)
Q Consensus 139 GWS~FV 144 (928)
-|.+|+
T Consensus 128 Twdel~ 133 (449)
T 3iot_A 128 TWEEIP 133 (449)
T ss_dssp BGGGHH
T ss_pred CHHHHH
Confidence 344443
No 9
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=70.39 E-value=6.7 Score=38.86 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=66.5
Q ss_pred CCCCCCEEEEE-E--ccCccEEEEEEeccCCCCCCCCCccCCCccccchHHHHHHHHhcCCcEEEEEcCCCCCCc-----
Q 002396 148 RLFAGDSVLFI-R--DEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSE----- 219 (928)
Q Consensus 148 kLvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv~ssdsm~~gvLaaAa~aaat~spFtV~YyPRas~sE----- 219 (928)
..+.||.|.+. + .++|+++-.-+...+ |..+.-....-+--+.+|......|..++|+.-|.....+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~l 98 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDL 98 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 57889999884 3 357776543221111 2222211111223466677777888889998877654444
Q ss_pred -ceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 220 -FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 220 -FVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
+.||++.+... ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 99 v~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 99 IQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp EEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred EEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888887643 35899999875 45542 567899999985
No 10
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=68.11 E-value=15 Score=35.29 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=63.9
Q ss_pred cCCCCCCCEEEEE-E--cc-CccEEEEEEeccCCCCCCCCCcc-CCCccccchHHHHHHHHhcCCcEEEEEcCCCC----
Q 002396 146 GKRLFAGDSVLFI-R--DE-KQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRAS---- 216 (928)
Q Consensus 146 eKkLvaGDsVVF~-R--~e-~GeL~VGIRRA~r~~~~~~ssv~-ssdsm~~gvLaaAa~aaat~spFtV~YyPRas---- 216 (928)
.+..+.||.|.+. . .. +|+.+-.-+. + .|..+. ....+ +--+.+|..-...|..++|.--|...
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~--~----~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS--K----EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT--T----CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC--C----cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3557789998874 2 23 6765543321 0 122222 11222 22355667667778888887755432
Q ss_pred --CCcceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 217 --PSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 217 --~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
-.-+.||++.| . ...+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 23467888888 2 257999999985 45553 567899999975
No 11
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=54.72 E-value=40 Score=32.82 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCc------ceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 193 ILAAAAHAAANNSPFTVFYNPRASPSE------FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 193 vLaaAa~aaat~spFtV~YyPRas~sE------FVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
-+.+|......|..++|+--|-....+ +.||++.+.+. . ....+||+|.+ +++ .|+|+.|.+
T Consensus 56 G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~-~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 56 GLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-G-IKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-T-CCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-c-CCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 467788888899999998765543332 67899988764 2 45888999975 332 589999985
No 12
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=47.44 E-value=17 Score=34.14 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=45.6
Q ss_pred ehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeccccccCCCCCCCccccceeee
Q 002396 223 PLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEP 302 (928)
Q Consensus 223 p~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEp 302 (928)
.++.|..-+. .++.+|||+||.=.-||-+. .=.|++. ++. +- -+ .++|.|.... +.-.|+-=.||.
T Consensus 10 s~~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~G-----l~--~vQv~W~~~G---~TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-NG-----VP--PVQVFWESTG---RTYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-TT-----SS--EEEEEETTTT---EEEEEEGGGEEE
T ss_pred cchhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-CC-----Cc--cceeeehhcC---ceEEEEeehhhh
Confidence 4567888887 88999999999733333221 2368887 442 21 22 8999999765 245666667787
Q ss_pred cCC
Q 002396 303 VTA 305 (928)
Q Consensus 303 v~~ 305 (928)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 13
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=41.30 E-value=25 Score=28.78 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.1
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
..|.+|+.+...|. +| ..||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s-~D--g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWS-ED--GCIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECT-TT--SCEEEEEEEEEET
T ss_pred CcCCcCCEEEEEEC-CC--CCEEEEEEEEEcC
Confidence 47999999999994 34 2899999999964
No 14
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.59 E-value=33 Score=29.78 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=40.5
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeccccccCCCCCCCccccceeeecCC
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA 305 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv~~ 305 (928)
..|.+|+++-.++ + | .++|-|+|++|... ....|.+++.. .+.|..=+|.|+..
T Consensus 5 ~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 5 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCCc
Confidence 5799999999999 3 3 38999999999752 34789999833 46666666666553
No 15
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=39.98 E-value=33 Score=31.15 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=40.5
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeccccccCCCCCCCccccceeeecCC
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA 305 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv~~ 305 (928)
..|.+|+++-..+ ++ .+||-++|++|... ....|.++++. .+.|..=+|.|+..
T Consensus 20 ~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 5799999999999 43 38999999999752 35899999843 36666667766654
No 16
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=39.62 E-value=27 Score=29.12 Aligned_cols=55 Identities=11% Similarity=0.267 Sum_probs=35.9
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeccccccCCCCCCCccccceeeec
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPV 303 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv 303 (928)
..|.+|+.+...|.. | ..||.++|.+|.... ....|.+.+-. +.+.|..=+|.|+
T Consensus 7 ~~~~vGd~c~A~~s~-D--g~wYrA~I~~v~~~~---------~~~~V~fvdYG---n~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-D--GQCYEAEIEEIDEEN---------GTAAITFAGYG---NAEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTT-T--SSEEEEEEEEEETTT---------TEEEEEETTTT---EEEEEEGGGEECC
T ss_pred CCCCCCCEEEEEECC-C--CCEEEEEEEEEcCCC---------CEEEEEEEecC---CEEEEeHHHcEeC
Confidence 679999999999943 3 289999999997421 13466666543 2344444444443
No 17
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=37.04 E-value=27 Score=27.95 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 235 QISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 235 ~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
.|.+|+..-..|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4999999999994333 899999999963
No 18
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.65 E-value=30 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceecccccc
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDES 286 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd~DP~rWp~S~WR~LqV~WDE~ 286 (928)
..|.+|+++...|. | ..||-++|++|.+. ....|..++-
T Consensus 8 ~~~kvGd~clA~ws--D--g~~Y~A~I~~v~~~----------~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT--D--CRYYPAKIEAINKE----------GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS--S--SSEEEEEEEEESTT----------SSEEEEETTS
T ss_pred CCCCCCCEEEEECC--C--CCEEEEEEEEECCC----------CEEEEEEecC
Confidence 57999999999996 3 38999999999631 2467888765
No 19
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=33.07 E-value=53 Score=31.45 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=43.9
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCC------CCCcceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 193 ILAAAAHAAANNSPFTVFYNPRA------SPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 193 vLaaAa~aaat~spFtV~YyPRa------s~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
-+.+|......|..++|.--|-. .-.-|.|++..+... . ..+.+||+|.+ ++ ..|+|+.|.+
T Consensus 57 G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~~v~~v~~~~f~~~-~-~~~~~G~~~~~--~~-------~~~~V~~v~~ 124 (151)
T 1ix5_A 57 GFEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEA-D-FEPEEGMVILA--EG-------IPATITEVTD 124 (151)
T ss_dssp HHHHHHHTCCTTCCCEEEECTTTSSCSCCSTTBCCEETHHHHTS-T-TCCCTTEEEES--SS-------CEEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHHCCCCCccEEEEEEHHHcCcc-C-CcccccCEEEE--CC-------eEEEEEEEcC
Confidence 35667777778888888765543 335688999998641 1 35899998763 32 5899999975
No 20
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=32.57 E-value=38 Score=30.50 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.6
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
..|.+|+.+...|. +| ..||.++|.+|..
T Consensus 9 ~~~kvGd~C~A~ys-~D--g~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWS-ED--GCIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECT-TT--CCEEEEEEEEEET
T ss_pred CCCCCCCEEEEEEC-CC--CCEEEEEEEEecC
Confidence 67999999999994 34 2899999999974
No 21
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=32.37 E-value=35 Score=33.03 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=32.0
Q ss_pred eEEEEEecCCCeEEEEEEEe---------CCCCceee--cccchhhhccCCCCCCCEEEE
Q 002396 109 QELMARDLHDNIWTFRHIYR---------GQPKRHLL--TTGWSLFVSGKRLFAGDSVLF 157 (928)
Q Consensus 109 q~LvakDl~Gk~W~FRhiyR---------g~prRhlL--TTGWS~FVreKkLvaGDsVVF 157 (928)
.++++.|..|++=.....-+ ..+-+|+| ..||.+ ++++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~---~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAA---RLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHH---HHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHH---HcCCCCCCEEeC
Confidence 46788888887776654211 12346888 688764 889999999975
No 22
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.86 E-value=30 Score=34.33 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCCCCCEEEEEEccCccEEEEEE
Q 002396 147 KRLFAGDSVLFIRDEKQQLLLGIR 170 (928)
Q Consensus 147 KkLvaGDsVVF~R~e~GeL~VGIR 170 (928)
..|.+||.|-|+++.+|+|.+.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 467899999999999999999975
No 23
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=29.00 E-value=1.5e+02 Score=30.74 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=44.7
Q ss_pred hHHHHHHHHhcCCcEEEEEcCCCCCCc------ceeehHHHHHHHhcCCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 193 ILAAAAHAAANNSPFTVFYNPRASPSE------FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 193 vLaaAa~aaat~spFtV~YyPRas~sE------FVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
-+.+|......|..++|+--|-....+ +.||++.+... . ....+||+|.+ +++ .|+|+.|.+
T Consensus 56 G~eeaL~Gm~vGek~~v~Ippe~AYGe~~~~lv~~vp~~~f~~~-~-~~~~vG~~~~~--~~~-------~g~V~~v~~ 123 (231)
T 3prb_A 56 GLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-G-IKPIKGLTITI--DGI-------PGKIVSINS 123 (231)
T ss_dssp HHHHHHHTCCTTCEEEEEECGGGTTCCCCGGGEEEEETHHHHTT-T-CCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEeCcHHhcCCCChHHEEecCHHHCCcc-c-CCCCCCcEEEe--cCC-------CEEEEEEcC
Confidence 466788888889989988766544333 67898887653 2 45888999964 332 599999985
No 24
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=26.23 E-value=50 Score=28.95 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=29.3
Q ss_pred hhhhccCCCCCCCEEEEEEc-cCccEEEEEEeccC
Q 002396 141 SLFVSGKRLFAGDSVLFIRD-EKQQLLLGIRRANR 174 (928)
Q Consensus 141 S~FVreKkLvaGDsVVF~R~-e~GeL~VGIRRA~r 174 (928)
.++++.-+++.||.+...-+ .+|++.+..+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 48999999999999999876 48889999998654
No 25
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=25.82 E-value=65 Score=40.61 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=45.7
Q ss_pred ceeehHHHHHHHhcCCCccCCeeeEeeeccCCCc-c-eeeEEEEEeecCCCCCCCCCCccceeccccccCCCCC--CCcc
Q 002396 220 FVVPLAKYYKAVHSNQISLGMRFRMMFETEESGT-R-RYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEK--RNRV 295 (928)
Q Consensus 220 FVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~-r-ry~GTI~gVsd~DP~rWp~S~WR~LqV~WDE~~~~~r--~~RV 295 (928)
.|+..+.-..-+..-.+.+|+||.|.= |++. . -..|||+||.... .=.+|+|=||++=.+.. ..|-
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~Vq---dsG~VPl~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQ---DSGKVPLHSKGTVVGYTSIG-------KNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEec---CCCCCccccceEEEEEecCC-------CceEEEEEeccCccCCCcccccc
Confidence 344444333334445699999999974 4442 2 3579999998532 24678999998865432 2345
Q ss_pred ccceeeecC
Q 002396 296 SIWEIEPVT 304 (928)
Q Consensus 296 SPWEIEpv~ 304 (928)
|+----.|.
T Consensus 1120 s~~RG~~v~ 1128 (1155)
T 3pie_A 1120 QTRRGLGLD 1128 (1155)
T ss_pred ccccccccc
Confidence 554444333
No 26
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=24.42 E-value=1.2e+02 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.056 Sum_probs=34.1
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhccCCCCCCCEEEEEEc----cCccEEEEEEecc
Q 002396 108 AQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD----EKQQLLLGIRRAN 173 (928)
Q Consensus 108 sq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVreKkLvaGDsVVF~R~----e~GeL~VGIRRA~ 173 (928)
...+.+.|..| ..++.+|+.. |.+||+|.+... =+|.+.+.|-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 45688999999 5778888631 889999998743 2777777776543
No 27
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=23.44 E-value=66 Score=27.97 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCccCCeeeEeeeccCCCcceeeEEEEEeec
Q 002396 234 NQISLGMRFRMMFETEESGTRRYMGTITGISD 265 (928)
Q Consensus 234 ~~ws~GMRFRM~FEtEDss~rry~GTI~gVsd 265 (928)
..|.+|+.+-..|..|. .||.++|.+|..
T Consensus 16 ~~~kvGd~C~A~ys~Dg---~wYRA~I~~i~~ 44 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDN---KFYRAEVEALHS 44 (77)
T ss_dssp TTCCTTCEEEEEETTTT---EEEEEEEEEECT
T ss_pred CCCCcCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 47999999999994333 899999999963
No 28
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=23.03 E-value=58 Score=32.24 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCCCEEEEEEccCccEEEEEE
Q 002396 150 FAGDSVLFIRDEKQQLLLGIR 170 (928)
Q Consensus 150 vaGDsVVF~R~e~GeL~VGIR 170 (928)
..||.+.|+++++|++.+.|-
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEES
T ss_pred cCCCEEEEEEcCCCEEEEEEC
Confidence 679999999999999999984
No 29
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=22.88 E-value=2e+02 Score=25.42 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=29.4
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhccCCCCCCCEEEEEEc----cCccEEEEEEe
Q 002396 108 AQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD----EKQQLLLGIRR 171 (928)
Q Consensus 108 sq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVreKkLvaGDsVVF~R~----e~GeL~VGIRR 171 (928)
...+.+.|..| ..+.+.| ...+.. .|++||+|.| +. ..|.+.+.+-|
T Consensus 39 v~~~~l~DeTG---~I~~tlW------------~~~~~~-~i~~Gdvv~i-~g~v~~~~~~~el~~g~ 89 (97)
T 3e0e_A 39 LKSLFLKDDTG---SIRGTLW------------NELADF-EVKKGDIAEV-SGYVKQGYSGLEISVDN 89 (97)
T ss_dssp EEEEEEEETTE---EEEEEEE------------GGGGGC-CCCTTCEEEE-EEEEEEC--CEEEEEEE
T ss_pred EEEEEEECCCC---cEEEEEE------------CCcccc-ccCCCCEEEE-EEEEEEcCCeEEEEECC
Confidence 34678889888 5555555 454444 8999999999 53 24455554443
No 30
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=22.70 E-value=1.8e+02 Score=26.38 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=47.5
Q ss_pred CcceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhc
Q 002396 66 PQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVS 145 (928)
Q Consensus 66 ~~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVr 145 (928)
..+..+.|+++..+..+ +...+.+.+-|..| +.++++|+.. .
T Consensus 16 ~~v~v~~~V~~~~~~~~----------------------~~~~~~~~l~DeTG---~I~~t~W~~~-------------~ 57 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTH----------------------ESISQVGLLGDETG---IIKFTIWKNA-------------E 57 (109)
T ss_dssp CEEEEEEEEEEEEECCC----------------------SSEEEEEEEECTTC---CEEEEEEGGG-------------C
T ss_pred CcEEEEEEEEEeEcCCC----------------------CeEEEEEEEECCCC---eEEEEEECcc-------------c
Confidence 35678888888876322 11245688999999 4777777521 2
Q ss_pred cCCCCCCCEEEEEEc----cCccEEEEEEecc
Q 002396 146 GKRLFAGDSVLFIRD----EKQQLLLGIRRAN 173 (928)
Q Consensus 146 eKkLvaGDsVVF~R~----e~GeL~VGIRRA~ 173 (928)
...|.+||+|.+.-. =+|.+.|.|-|..
T Consensus 58 ~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~ 89 (109)
T 2kbn_A 58 LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNS 89 (109)
T ss_dssp CCCCCTTCEEEEEEEEEEEETTEEEEEECSSS
T ss_pred ccccCCCCEEEEEEEEEEEECCEEEEEECCce
Confidence 358899999998632 2788888777654
No 31
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=22.24 E-value=40 Score=30.39 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=15.1
Q ss_pred hccCCCCCCCEEEEEEcc
Q 002396 144 VSGKRLFAGDSVLFIRDE 161 (928)
Q Consensus 144 VreKkLvaGDsVVF~R~e 161 (928)
+..|+..+||+|+|.-..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 568999999999997653
No 32
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=21.77 E-value=1.2e+02 Score=29.16 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=31.8
Q ss_pred eEEEEEecCCCeEEEEEEE---------eCCCCceee--cccchhhhccCCCCCCCEEEE
Q 002396 109 QELMARDLHDNIWTFRHIY---------RGQPKRHLL--TTGWSLFVSGKRLFAGDSVLF 157 (928)
Q Consensus 109 q~LvakDl~Gk~W~FRhiy---------Rg~prRhlL--TTGWS~FVreKkLvaGDsVVF 157 (928)
.++.+.|.+|++=.....- .+.+-+|+| ..||.+ ++++++||.|.+
T Consensus 70 LDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~~~---~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 70 LDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGTVK---RLGVSPGDRLEG 126 (136)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTHHH---HHTCCTTCEEEE
T ss_pred eEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcChHH---hcCCCCCCEEEE
Confidence 4577888888766653221 123456888 688764 889999999985
No 33
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=21.19 E-value=2.1e+02 Score=26.01 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=45.4
Q ss_pred cceEEEEEcccccCCCCCceeeecchhhhcCCCCCCCCCC-CceEEEEEecCCCeEEEEEEEeCCCCceeecccchhhhc
Q 002396 67 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVS 145 (928)
Q Consensus 67 ~~~~F~KtLTaSDVs~~GrfsVPkr~AE~~FPpLD~s~~~-psq~LvakDl~Gk~W~FRhiyRg~prRhlLTTGWS~FVr 145 (928)
.+..+.++++.+++.. +-+ ..+. +...+.+.|..|. .++.+|+ ..+
T Consensus 14 ~v~~~~~V~~~~~~~~-----~~~------------k~G~~~~~~~~l~D~TG~---I~~tlW~------------~~~- 60 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQ-----IQT------------KNGVRTISEAIVGDETGR---VKLTLWG------------KHA- 60 (119)
T ss_dssp SEEEEEEEEEECCCEE-----ECC------------TTCCEEEEEEEEEETTEE---EEEEEEG------------GGT-
T ss_pred cEEEEEEEEECCCCee-----EEe------------cCCCEEEEEEEEEeCCCE---EEEEEEC------------Chh-
Confidence 4567778888776432 000 0121 4567899999984 6666665 222
Q ss_pred cCCCCCCCEEEEEEc----cCccEEEEEEec
Q 002396 146 GKRLFAGDSVLFIRD----EKQQLLLGIRRA 172 (928)
Q Consensus 146 eKkLvaGDsVVF~R~----e~GeL~VGIRRA 172 (928)
..+.+||+|.+... -+|.+.+.|.|.
T Consensus 61 -~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~ 90 (119)
T 1o7i_A 61 -GSIKEGQVVKIENAWTTAFKGQVQLNAGSK 90 (119)
T ss_dssp -TCCCTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred -hcCCCCCEEEEEeEEEEEeCCEEEEEECCC
Confidence 24889999988743 277777777654
Done!