Your job contains 1 sequence.
>002397
MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA
LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNI
WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANLS
SSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGM
RFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEI
EPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQ
WMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQL
AKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTSNILQQ
QPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDPINQNLQMSDKQIQLHLL
QKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRSGTPTQMLEMHQVTPTSL
PQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPGHMGLPASHIINPVSTAG
NSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRTHRSAGIGEEVAQSASAL
LNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDTSS
STTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDGPLGSMNP
DPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDST
INDSSFLNGGPWAPPPQFPQRMRTYTKV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002397
(928 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 1554 3.1e-175 3
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 1170 2.8e-125 3
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 1140 1.2e-119 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 1127 2.8e-114 1
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 845 3.9e-87 2
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 773 9.0e-77 1
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 735 6.7e-75 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 743 1.4e-73 1
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 712 1.8e-72 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 715 1.3e-70 1
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 685 2.0e-69 2
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 622 8.8e-63 2
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 633 6.2e-62 1
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 625 4.3e-61 1
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 605 5.7e-59 1
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 591 1.7e-57 1
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 429 1.0e-55 3
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 373 1.2e-45 2
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 381 2.3e-43 3
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 415 6.5e-37 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 300 1.4e-25 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 160 1.6e-08 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 152 9.3e-08 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 148 3.9e-07 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 148 4.7e-07 2
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 147 5.5e-07 1
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 143 1.1e-06 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 133 1.1e-05 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 134 1.4e-05 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 129 1.6e-05 2
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 133 2.0e-05 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 126 5.9e-05 1
DICTYBASE|DDB_G0285837 - symbol:DDB_G0285837 "BRWD group ... 134 0.00025 3
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 1554 (552.1 bits), Expect = 3.1e-175, Sum P(3) = 3.1e-175
Identities = 310/486 (63%), Positives = 359/486 (73%)
Query: 1 MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA 60
M+K D IPNYPNLPSKL+C+L +VTLHADTETDEVYAQMTLQPV YDREALL SD+
Sbjct: 57 MQKQTDF-IPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMG 115
Query: 61 LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNI 120
LK N+ TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQE++A+DLHD
Sbjct: 116 LKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTT 175
Query: 121 WTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXX 180
WTFRHIYRGQPKRHLLTTGWS+FVS KRLFAGDSVLF+RDEK QL+LGIRRANRQ
Sbjct: 176 WTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLS 235
Query: 181 XXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGM 240
MHIGIL N+SPFT+F+NPRASPSEFVVPLAKY KA+++ Q+SLGM
Sbjct: 236 SSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYA-QVSLGM 294
Query: 241 RFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEI 300
RFRMMFETE+ G RRYMGT+TGISDLDPVRWK SQWRNLQVGWDESTAG++ +RVSIWEI
Sbjct: 295 RFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEI 354
Query: 301 EPVTAPFFICPPPFFRSKHPRQAD--DDASDLDNVFKRTMPWIGDDFGVKDSQS--LPGL 356
EPV PF+ICPPPFFR K+PRQ DD D++N FKR MPW+G+DFG+KD+QS PGL
Sbjct: 355 EPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGL 414
Query: 357 SLVQWMNMQQNPSLANAMQSSYMHSLPGSILQ-NLNGGLSQMPQQNNLQYTGQSLPQQVP 415
SLVQWM+MQQN N + S LP ++ NL + L + +L
Sbjct: 415 SLVQWMSMQQN----NPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANS 470
Query: 416 QIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQVLQPQNLVQTS 475
Q ++ P+TVN + S + QP SQQ +Q Q+ Q Q+ Q Q L +
Sbjct: 471 QFNK----PNTVNHI-SQQMQAQPAMVKSQQQQQQQQQQHQHQ---QQQLQQQQQLQMSQ 522
Query: 476 NILQQQ 481
+QQQ
Sbjct: 523 QQVQQQ 528
Score = 149 (57.5 bits), Expect = 3.1e-175, Sum P(3) = 3.1e-175
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 821 PRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENS-KDAQQELS 879
PR+N+ + N++ ++ DPL ++ KDF N ++ NY N+ +D + ELS
Sbjct: 868 PRNNLAFPGNLE----AVTSDPLYSQ------KDFQN------LVPNYGNTPRDIETELS 911
Query: 880 SSIVS-QSFGVPDMAF-----NSIDSTINDSSFLNGGP-WAPPPQFPQRMRTYTKV 928
S+ +S QSFG+P + F N + INDS +NGG W P QRMRTYTKV
Sbjct: 912 SAAISSQSFGIPSIPFKPGCSNEVGG-INDSGIMNGGGLW---PNQTQRMRTYTKV 963
Score = 81 (33.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 41/125 (32%), Positives = 54/125 (43%)
Query: 347 VKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQ-NLNGGLSQMPQQNNLQY 405
+++ Q L +Q N+ QNP Q S S P LQ L L Q QQ ++
Sbjct: 608 LRNQQEQSSLHSLQ-QNLSQNPQQLQMQQQSSKPS-PSQQLQLQLLQKLQQQQQQQSIPP 665
Query: 406 TGQSL-PQ----QVPQIDQLAKLPSTVN--PL--GSNILP-----QQPLGDISQQSRQNM 451
SL PQ Q Q QL +L S+ N PL G+N P Q P +S Q + M
Sbjct: 666 VSSSLQPQLSALQQTQSHQLQQLLSSQNQQPLAHGNNSFPASTFMQPPQIQVSPQQQGQM 725
Query: 452 ITQNL 456
+NL
Sbjct: 726 SNKNL 730
Score = 54 (24.1 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 30/95 (31%), Positives = 42/95 (44%)
Query: 391 NGGLSQMPQ-QNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQ 449
N GLSQM +Q+ Q Q+ + + S+++ L N L Q P Q Q
Sbjct: 580 NKGLSQMTSFAQEMQFQQQLEMHNSSQLLRNQQEQSSLHSLQQN-LSQNP----QQLQMQ 634
Query: 450 NMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSI 484
++ PS +Q Q+LQ L Q QQQ SI
Sbjct: 635 QQSSKPSPSQQLQLQLLQ--KLQQQ----QQQQSI 663
Score = 37 (18.1 bits), Expect = 3.1e-175, Sum P(3) = 3.1e-175
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 588 QMLEMHQVTPTSLPQSNIMSQQIANSGSL 616
Q ++ Q + Q + Q I N+G++
Sbjct: 508 QQQQLQQQQQLQMSQQQVQQQGIYNNGTI 536
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 94 EKIFPPLDFSMQPPAQELMARDLH 117
++ PP+ S+QP L H
Sbjct: 660 QQSIPPVSSSLQPQLSALQQTQSH 683
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 1170 (416.9 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 249/487 (51%), Positives = 314/487 (64%)
Query: 3 KDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYD-REALLRSDLAL 61
K++D IPNYP+L +L+C L NVT+HAD ETDEVYAQMTLQP+ + + ++ L ++L +
Sbjct: 61 KEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV 120
Query: 62 KSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIW 121
S +P T +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLD+S QPPAQELMARDLHDN W
Sbjct: 121 PSRQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEW 179
Query: 122 TFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXX 181
FRHI+RGQPKRHLLTTGWS+FVS KRL AGDSVLFI ++K QLLLGIRRANR
Sbjct: 180 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPS 239
Query: 182 XXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMR 241
MH+G+L NS FT+FYNPRASPSEFV+PLAKY KAV+ ++S+GMR
Sbjct: 240 SVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMR 299
Query: 242 FRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIE 301
FRM+FETEES RRYMGTITGI DLDP RW NS WR+++VGWDESTAGE++ RVS+WEIE
Sbjct: 300 FRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIE 359
Query: 302 PVTAPFFICPPPF-FRSKHP----RQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGL 356
P+T F + P PF R K P + + D + P + D G++ S + G+
Sbjct: 360 PLTT-FPMYPSPFPLRLKRPWPPGLPSFHGLKEDDMGMSMSSPLMWDR-GLQ-SLNFQGM 416
Query: 357 SLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQ-SLPQQVP 415
+ WM + + S MQ+ ++ + LQ++ G + LQ+ Q P
Sbjct: 417 GVNPWMQPRLDTSGLLGMQNDVYQAMAAAALQDMRGIDPAKAAASLLQFQNSPGFSMQSP 476
Query: 416 QIDQLAKLPSTVNPLGSNILPQQPLGD-ISQQSRQNMITQNLPSGPVQAQVLQPQNLVQT 474
+ Q L ++ + QQ +SQQ +Q + Q Q Q L Q Q
Sbjct: 477 SLVQPQMLQQQLSQQQQQLSQQQQQQQQLSQQQQQQLSQQ-------QQQQLSQQQQQQL 529
Query: 475 SNILQQQ 481
S QQQ
Sbjct: 530 SQQQQQQ 536
Score = 54 (24.1 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 798 NSLSYNPQSTLRDAS--QDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDF 855
N++S P R+ S Q+G DP S++ +G NID + P+ + +G+
Sbjct: 691 NAVSLPPFPGGRECSIEQEGSAS-DPHSHLLFGVNIDSS-SLLMPNGMSNLRSIGIEGGD 748
Query: 856 SNNISSGAMLANYENSKDAQQELSSSIVSQS 886
S + + N + S + SS + +S
Sbjct: 749 STTLPFTSSNFNNDFSGNLAMTTPSSCIDES 779
Score = 42 (19.8 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 696 QPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLP 740
+P ++S S G G QS L S +P NA + P
Sbjct: 656 RPAVDSSFQHS-GAGNNNTQSVLEQLGQSHTSNVPPNAVSLPPFP 699
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 1140 (406.4 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 250/486 (51%), Positives = 309/486 (63%)
Query: 8 QIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA-LKSNKP 66
Q+PNYPNLPS+L+C + NVTLHAD ++DE+YAQM+LQPV S +R+ D L+ +K
Sbjct: 95 QVPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHS-ERDVFPVPDFGMLRGSKH 153
Query: 67 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHI 126
TEFFCKTLTASDTSTHGGFSVPRRAAEK+FPPLD+S QPP QEL+ RDLH+N WTFRHI
Sbjct: 154 PTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHI 213
Query: 127 YRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXX 186
YRGQPKRHLLTTGWSLFV KRL AGDSVLFIRDEK QL++G+RRANRQ
Sbjct: 214 YRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSA 273
Query: 187 XXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMF 246
MHIG+L N +PF +FYNPRA P+EFV+PLAKY KA+ +Q+S+GMRF MMF
Sbjct: 274 DSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMF 333
Query: 247 ETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAP 306
ETE+SG RRYMGTI GISDLDP+RW S+WRNLQV WDE +K RVS W+IE +
Sbjct: 334 ETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPES- 392
Query: 307 FFICPP---PFFRSKHPRQADDDASDLDNVFKRTMPWIGDDF-GVKDSQSLPGLSLVQWM 362
FI P R HP + ++ ++ KR + + D G+ S P ++ Q M
Sbjct: 393 LFIFPSLTSGLKRQLHPSYFAGE-TEWGSLIKRPLIRVPDSANGIMPYASFPSMASEQLM 451
Query: 363 NMQQNPSLANAMQSSYMHSLPGSILQNLNGGL-SQMPQQNNLQYTGQSLPQQVPQIDQLA 421
M P N S+M + +I+ NGGL M Q L +S Q PQ
Sbjct: 452 KMMMRPH-NNQNVPSFMSEMQQNIVMG-NGGLLGDMKMQQPLMMNQKSEMVQ-PQ----N 504
Query: 422 KLPSTVNPLGSNILPQ-QPLGD-ISQQSR-QNMITQNLPSGPVQ---AQVLQPQNLVQTS 475
KL TVNP SN Q Q L +S ++ +N SG VQ Q ++ + V TS
Sbjct: 505 KL--TVNPSASNTSGQEQNLSQSMSAPAKPENSTLSGCSSGRVQHGLEQSMEQASQVTTS 562
Query: 476 NILQQQ 481
+ ++
Sbjct: 563 TVCNEE 568
Score = 58 (25.5 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 29/89 (32%), Positives = 41/89 (46%)
Query: 854 DFSNNISSGAMLANYENS--KDAQQELSSSIV--SQSFGVPDMAFNS-----IDSTIN-D 903
DF N+ SG ++ N S +D Q +++S+ SQ+F D NS S ++ D
Sbjct: 713 DFQNH-PSGCLVGNNNTSFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFD 771
Query: 904 SSFLN----GGPWAPPPQFPQRMRTYTKV 928
L G W P R+RTYTKV
Sbjct: 772 DCSLRQNSKGSSWQKIAT-P-RVRTYTKV 798
Score = 39 (18.8 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 595 VTPTSLPQSNIMSQQIANSGSLNNVQFS 622
++PT + Q + ++ NS +N+++ S
Sbjct: 873 LSPTEVQQMSEEGMKLLNSAGINDLKTS 900
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 250/487 (51%), Positives = 311/487 (63%)
Query: 3 KDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPV-PSYDREALLRSDLAL 61
K++DG IPNYP+LP +L+C L NVT+HAD ETDEVYAQMTLQP+ P +E + +L +
Sbjct: 58 KEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGI 117
Query: 62 KSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIW 121
S +P + +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLD+++QPPAQEL+ARDLHD W
Sbjct: 118 PSKQP-SNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEW 176
Query: 122 TFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXX 181
FRHI+RGQPKRHLLTTGWS+FVS KRL AGDSV+FIR+EK QL LGIR A R
Sbjct: 177 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPS 236
Query: 182 XXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMR 241
MHIG+L NS FTVF++PRAS SEFV+ L+KY KAV +IS+GMR
Sbjct: 237 SVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMR 296
Query: 242 FRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIE 301
FRM+FETEES RRYMGTITGISDLD VRW NS WR+++VGWDESTAGE++ RVS+WEIE
Sbjct: 297 FRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIE 356
Query: 302 PVTAPFFICPPPF-FRSKHPRQADDDA-SDLDNVFKRTMPWIGDDFGVKDSQ---SLPGL 356
P+T F + P F R K P A + D + W+ G + + P +
Sbjct: 357 PLTT-FPMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSV 415
Query: 357 SLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGG--LSQM---PQQNNLQYTGQS-- 409
L WM + + S + ++ + LQN+ GG L Q Q+ + QY QS
Sbjct: 416 GLFPWMQQRLDLSQMGTDNNQQYQAMLAAGLQNIGGGDPLRQQFVQLQEPHHQYLQQSAS 475
Query: 410 ----LPQQVPQIDQLAK-LPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQAQ 464
L Q Q Q ++ L + S LPQQ + RQ + N P+G Q Q
Sbjct: 476 HNSDLMLQQQQQQQASRHLMHAQTQIMSENLPQQNM-------RQEV--SNQPAGQ-QQQ 525
Query: 465 VLQP-QN 470
+ QP QN
Sbjct: 526 LQQPDQN 532
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 845 (302.5 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 162/314 (51%), Positives = 213/314 (67%)
Query: 8 QIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQ 67
Q+P Y +LPSKLLC ++NV L A+ +TDEVYAQ+TL P + D A+ + + Q
Sbjct: 102 QMPLY-DLPSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQ 160
Query: 68 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIY 127
FCKTLTASDTSTHGGFSV RR A++ PPLD S QPP QEL+A+DLH N W FRHI+
Sbjct: 161 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIF 220
Query: 128 RGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXX 187
RGQP+RHLL +GWS+FVS KRL AGD+ +F+R E +L +G+RRA RQ N
Sbjct: 221 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSH 280
Query: 188 XMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFE 247
MH+G+L + FTV+Y PR SPSEF+VP +Y ++V +N S+GMRF+M FE
Sbjct: 281 SMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNY-SIGMRFKMRFE 339
Query: 248 TEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPF 307
EE+ +R+ GTI GI + DP RW S+WR+L+V WDE+++ + +RVS W++EP AP
Sbjct: 340 GEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPP 399
Query: 308 FICPPPFFRSKHPR 321
+ P P R K PR
Sbjct: 400 ALSPVPMPRPKRPR 413
Score = 45 (20.9 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 386 ILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLA 421
+ N+NG S M Q+NNL P++ L+
Sbjct: 661 LTNNMNGTDSTMSQRNNLNDAAGLTQIASPKVQDLS 696
Score = 45 (20.9 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 710 GEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGA 769
G + S LN +A T ++ V+DL +S S N + Q + F T + A
Sbjct: 667 GTDSTMSQRNNLNDAAGLTQIASPK-VQDLSDQSKGSKSTNDHREQGRPFQTNNPHPKDA 725
Query: 770 ATQTD 774
T+T+
Sbjct: 726 QTKTN 730
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 154/324 (47%), Positives = 212/324 (65%)
Query: 1 MKKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLA 60
M + ++ Q+P++ NLPSK+LC ++N+ A+ ETDEVYAQ+TL +P D+ D
Sbjct: 56 MHQGLEQQMPSF-NLPSKILCKVINIQRRAEPETDEVYAQITL--LPELDQSEPTSPDAP 112
Query: 61 LKS-NKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDN 119
++ K FCKTLTASDTSTHGGFSV RR A+ PPLD S QPP QEL+A DLH++
Sbjct: 113 VQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNS 172
Query: 120 IWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANX 179
W FRHI+RGQP+RHLLTTGWS+FVS K+L AGD+ +F+R E ++L +G+RR RQ N
Sbjct: 173 EWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNI 232
Query: 180 XXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLG 239
MHIG+L + F+VFY PR S SEF+V + +Y +A + ++S+G
Sbjct: 233 PSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEA-KTQKLSVG 291
Query: 240 MRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWE 299
MRF+M FE EE+ +R+ GTI G+ + W +S+WR+L+V WDE ++ + RVS WE
Sbjct: 292 MRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWE 351
Query: 300 IEPVTAPFFIC--PPPFFRSKHPR 321
+EP+ A P P R+K PR
Sbjct: 352 LEPLVANSTPSSQPQPPQRNKRPR 375
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 735 (263.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 166/360 (46%), Positives = 214/360 (59%)
Query: 8 QIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDR---EALLRSDLA---- 60
+IP + +L +++C ++NV L A+ +TDEVY Q+TL P+ + E +L
Sbjct: 105 EIPKF-DLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEE 163
Query: 61 ---LKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLH 117
S K FCKTLTASDTSTHGGFSVPRRAAE F PLD+ Q P+QEL+A+DLH
Sbjct: 164 RNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLH 223
Query: 118 DNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPA 177
W FRHIYRGQP+RHLLTTGWS+FVS K L +GD+VLF+RDE +L LGIRRA R P
Sbjct: 224 GVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAAR-PR 282
Query: 178 NXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQIS 237
N IL S F VFY+PRA+ +EFV+P KY ++ S +
Sbjct: 283 NGLPDSIIEKNSCSNILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRS-PVC 341
Query: 238 LGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSI 297
+G RFRM FE ++S RR G +TG+ DLDP RW NS+WR L V WDES + + RVS
Sbjct: 342 IGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSP 401
Query: 298 WEIEP-VTAPFF-ICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPG 355
WEI+P V+ P I P R K P D + N + ++ + V+ S+ L G
Sbjct: 402 WEIDPSVSLPHLSIQSSP--RPKRPWAGLLDTTPPGNPITKRGGFLDFEESVRPSKVLQG 459
Score = 39 (18.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 6/37 (16%), Positives = 22/37 (59%)
Query: 797 NNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDG 833
+ ++++ ++ DA +G +P + +++P+ ++ G
Sbjct: 592 SRAINFGEETRKFDAQNEGGLPNNVTADLPFKIDMMG 628
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 156/369 (42%), Positives = 219/369 (59%)
Query: 15 LPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCKT 74
LP K+LC ++NV+L A+ +TDEVYAQ+TL PV + E + + +P+ F K
Sbjct: 60 LPPKILCNVMNVSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKV 119
Query: 75 LTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKRH 134
LTASDTSTHGGFSV R+ A + PPLD + Q P QEL+A D+H W F+HI+RGQP+RH
Sbjct: 120 LTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRH 179
Query: 135 LLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGIL 194
LLTTGWS FV+ KRL AGD+ +F+R E +L +G+RRAN Q ++ MH+G+L
Sbjct: 180 LLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVL 239
Query: 195 XXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTR 254
+ F V+Y PR S +F++ L KY +A+ SN+ S+GMRF+M FE E+S R
Sbjct: 240 ATARHATQTKTMFIVYYKPRTS--QFIISLNKYLEAM-SNKFSVGMRFKMRFEGEDSPER 296
Query: 255 RYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPF 314
RY GT+ G+ D P WK+S+WR L+V WDE + + N+VS WEIEP +
Sbjct: 297 RYSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFVNSENVPKSVM 355
Query: 315 FRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLAN-- 372
++K PRQ + S LD + W + + QW + QQ AN
Sbjct: 356 LKNKRPRQVSE-VSALDVGITASNLW--SSVLTQPHEFAQSCITSQWSSPQQCHRDANED 412
Query: 373 AMQSSYMHS 381
A +S ++++
Sbjct: 413 AKKSDWLNN 421
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 712 (255.7 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 147/309 (47%), Positives = 194/309 (62%)
Query: 5 IDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSN 64
+D +IP + NLP K+LC +L+VTL A+ ETDEVYAQ+TLQP L L ++
Sbjct: 81 VDQEIPVF-NLPPKILCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPL-VEPA 138
Query: 65 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFR 124
KP + F K LTASDTSTHGGFSV R+ A + P LD + P QEL+ARDLH W F+
Sbjct: 139 KPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFK 198
Query: 125 HIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXX 184
HI+RGQP+RHLLTTGWS FV+ KRL AGD+ +F+R E L +G+RR +Q +
Sbjct: 199 HIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVI 258
Query: 185 XXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRM 244
M +G+L + F VFY PR S +F++ + KY A+ N SLGMR+RM
Sbjct: 259 SSQSMRLGVLATASHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAM-KNGFSLGMRYRM 315
Query: 245 MFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVT 304
FE EES R + GTI G DL +W S+WR+LQ+ WDE ++ ++ N+VS WEIEP +
Sbjct: 316 RFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFS 374
Query: 305 APFFICPPP 313
P + P P
Sbjct: 375 -PSALTPTP 382
Score = 39 (18.8 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 877 ELSSSIVSQSFGVP-DMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTK 927
+L+S S + +P D S+DS I+DS+ P + Q+ +T T+
Sbjct: 462 DLTSKPASAT--IPHDKQLISVDSNISDSTTKCQDPNSSNSPKEQKQQTSTR 511
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 149/300 (49%), Positives = 191/300 (63%)
Query: 15 LPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYD-----REALLRSD-------LALK 62
LP + C +L+V LHA+T TDEVYAQ++L P S D RE ++ D + +
Sbjct: 94 LPPHVFCRILDVKLHAETTTDEVYAQVSLLP-ESEDIERKVREGIIDVDGGEEDYEVLKR 152
Query: 63 SNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWT 122
SN P FCKTLTASDTSTHGGFSVPRRAAE FPPLD+S P+QEL+ARDLH W
Sbjct: 153 SNTPH--MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWR 210
Query: 123 FRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXX 182
FRHIYRGQP+RHLLTTGWS FV+ K+L +GD+VLF+R + +L LG+RRA++
Sbjct: 211 FRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALS 270
Query: 183 XXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRF 242
M+ +S F++ YNP+AS S F++P K+ K V +GMRF
Sbjct: 271 AQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIPAPKFLKVV-DYPFCIGMRF 329
Query: 243 RMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEP 302
+ E+E++ RR G I+GISDLDP+RW S+WR L V WD+ A + RVS WEIEP
Sbjct: 330 KARVESEDASERRSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEP 389
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 685 (246.2 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 145/305 (47%), Positives = 186/305 (60%)
Query: 8 QIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQ 67
+IP + +LP K+LC +L+VTL A+ ETDEVYAQ+TLQP L + + K +
Sbjct: 67 EIPVF-DLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPI-VGPTKQE 124
Query: 68 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIY 127
F K LTASDTSTHGGFSV R+ A + P LD + P QEL+ RDLH W F+HI+
Sbjct: 125 FHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIF 184
Query: 128 RGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXX 187
RGQP+RHLLTTGWS FVS KRL AGD+ +F+R E L +G+RR R +
Sbjct: 185 RGQPRRHLLTTGWSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQ 244
Query: 188 XMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFE 247
MH+G+L + F VFY PR S +F+V + KY +A+ + SLG RFRM FE
Sbjct: 245 SMHLGVLATASHAVRTTTIFVVFYKPRIS--QFIVGVNKYMEAI-KHGFSLGTRFRMRFE 301
Query: 248 TEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPF 307
EES R + GTI G DL +W S+WR+LQV WDE T ++ ++VS WEIEP A
Sbjct: 302 GEESPERIFTGTIVGSGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATS 360
Query: 308 FICPP 312
I P
Sbjct: 361 PISTP 365
Score = 37 (18.1 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 368 PSLANAMQSSYMHSLPGSILQNLNGGL 394
PS+ S+++SLP S ++N L
Sbjct: 381 PSVKTPAPPSFLYSLPQS-QDSINASL 406
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 622 (224.0 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 135/345 (39%), Positives = 189/345 (54%)
Query: 14 NLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCK 73
+LPSKL C ++ + L + +DE YA++TL P D ++ +P F K
Sbjct: 73 DLPSKLQCRVIAIQLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTK 128
Query: 74 TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKR 133
LTASDTS GGF VP++ A + PPLD S P QEL+A DLH N W F H YRG P+R
Sbjct: 129 VLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQR 186
Query: 134 HLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGI 193
HLLTTGW+ F + K+L AGD ++F+R E +L +GIRRA Q N M G+
Sbjct: 187 HLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGV 246
Query: 194 LXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGT 253
+ N F V Y PR+S +F+V K+ AV+ N+ ++G RF M FE ++
Sbjct: 247 IASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDAVN-NKFNVGSRFTMRFEGDDFSE 303
Query: 254 RRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPP 313
RRY GTI G+SD P WK S+WRNL+V WDE + + N+VS WEIE + + P
Sbjct: 304 RRYFGTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIEHLMPALNVPRPS 362
Query: 314 FFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSL 358
++K R+ ++ S ++ + G + G S +SL
Sbjct: 363 LLKNKRLREVNEIGSSSSHLLPPILTQ-GQEIGQLSVASPMNISL 406
Score = 37 (18.1 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 645 MGLPASHIINPVSTAG 660
+G +SH++ P+ T G
Sbjct: 375 IGSSSSHLLPPILTQG 390
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 147/423 (34%), Positives = 219/423 (51%)
Query: 14 NLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCK 73
+LPSKL C ++ + L + +DE+YA++TL P D ++ + +P F K
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDEIYAEITLMP----DTTQVVIPTQSENRFRPLVNSFTK 128
Query: 74 TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKR 133
LTASDTS +GGFSVP++ A + PPLD S PAQE++A DLHDN W FRH YRG P+R
Sbjct: 129 VLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQR 188
Query: 134 HLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGI 193
H LTTGW+ F++ K+L GD ++F+R E +L +GIRRA Q N M G+
Sbjct: 189 HSLTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGV 248
Query: 194 LXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGT 253
+ N F V Y PR+S +F+V K+ AV+ N+ ++G RF M FE ++
Sbjct: 249 IASAKHAFDNQCIFIVVYKPRSS--QFIVSYDKFLDAVN-NKFNVGSRFTMRFEGDDFSE 305
Query: 254 RRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPP 313
RRY GTI G+SD P WK S+WR+L+V WDE + + N+VS WEIE + +
Sbjct: 306 RRYFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLVPALNVPRSS 364
Query: 314 FFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLV--QWMNMQQNPSLA 371
++K R+ ++ S ++ + G + G S +SL NPS
Sbjct: 365 LLKNKRLREVNEFGSSSSHLLPPILTQ-GQEIGQLSVASPMNISLRYRDTTEAAMNPS-- 421
Query: 372 NAMQSSYMHSLPGSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLG 431
+ S + +P N N + ++N G + +D + + +G
Sbjct: 422 RLLMSYPVQPMPKL---NYNNQMVTQIEENITTKAGTNFRLFGVTLDTPPMIKDPIKQIG 478
Query: 432 SNI 434
S+I
Sbjct: 479 SDI 481
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 136/366 (37%), Positives = 202/366 (55%)
Query: 14 NLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCK 73
+ PSKL C ++ + L + +DE YA++TL P D ++ +P F K
Sbjct: 73 DFPSKLQCRVIAIQLKVENNSDETYAEITLMP----DTTQVVIPTQNQNQFRPLVNSFTK 128
Query: 74 TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKR 133
LTASDTS HGGFSVP++ A + PPLD S P QE++A DLH N W FRHIYRG +R
Sbjct: 129 VLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQR 188
Query: 134 HLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGI 193
HLLT GW+ F + K+L GD ++F+R E +L +GIRRA Q N M GI
Sbjct: 189 HLLTIGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGI 248
Query: 194 LXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGT 253
+ N F V Y PR+S +F+V K+ V+ N+ ++G RF M FE ++
Sbjct: 249 IASAKHAFDNQCMFIVVYKPRSS--QFIVSYDKFLDVVN-NKFNVGSRFTMRFEGDDFSE 305
Query: 254 RRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPP 313
RR GTI G+SD P WK S+WR+L+V WDE + + N+VS W+IE +T +
Sbjct: 306 RRSFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHLTPWSNVSRSS 364
Query: 314 FFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLP-GLSLVQWMNMQQNPSLAN 372
F ++K R+ ++ S ++ T+ G + G + S + P +SL ++ ++ ++ +
Sbjct: 365 FLKNKRSREVNEIGSSSSHLLPPTLTQ-GQEIG-QQSMATPMNISL-RYRDITEDAMTPS 421
Query: 373 AMQSSY 378
+ SY
Sbjct: 422 RLLMSY 427
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 160/451 (35%), Positives = 231/451 (51%)
Query: 14 NLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCK 73
+LPSKL C ++ + L + +DE YA++TL P D ++ +P F K
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTK 128
Query: 74 TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKR 133
LTASDTS HGGF VP++ A + P LD S PAQEL+A DLH N W F H YRG P+R
Sbjct: 129 VLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQR 188
Query: 134 HLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGI 193
HLLTTGW+ F + K+L AGD ++F+R E +L +GIRRA Q N M G+
Sbjct: 189 HLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGV 248
Query: 194 LXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGT 253
+ N FTV Y PR+S +F+V K+ AV+ N+ ++G RF M E ++
Sbjct: 249 VASAKHAFDNQCMFTVVYKPRSS--KFIVSYDKFLDAVN-NKFNVGSRFTMRLEGDDFSE 305
Query: 254 RRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPP 313
RR GTI G+SD P WK S+WR+L+V WDE T+ +VS W+IE + P P
Sbjct: 306 RRCFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHLM-PAINVPRS 363
Query: 314 FF-RSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWMN--MQQNPSL 370
F ++K R+ ++ S ++ +P I G ++ Q LS+ MN ++ +
Sbjct: 364 FLLKNKRLREVNEIGSSSSHL----LPPILTQ-GQENEQ----LSVASPMNISLRYRDAT 414
Query: 371 ANAMQ-SSYMHSLPGSILQNLNGGLSQMP---QQNNLQYTGQSLPQQVPQIDQLAKLPST 426
+AM S + S P + LN +QM ++N TG + +D +
Sbjct: 415 EDAMNPSKLLMSYPVQPMPKLNYN-NQMVTEMEENITTKTGTNFRLFGVTLDTPPVIKDP 473
Query: 427 VNPLGSNI--LPQQPLGDISQQSRQNMITQN 455
+ +GS I L + +SQ R QN
Sbjct: 474 IEEIGSEISKLTEGKKFGLSQTLRSPTEIQN 504
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 122/317 (38%), Positives = 178/317 (56%)
Query: 14 NLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTEFFCK 73
+LPSKL C ++ + L + +DE YA++TL P D ++ + +P F K
Sbjct: 73 DLPSKLQCRVIAIHLKVENNSDETYAEITLMP----DTTQVVIPTQSENQFRPLVNSFTK 128
Query: 74 TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQPKR 133
LTASDTS +GGF VP++ A + PPL PAQEL+A+DLH N W FRH YRG P+R
Sbjct: 129 VLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQR 184
Query: 134 HLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGI 193
H LTTGW+ F + K+L GD ++F+R E +L +GIRRA Q N M G+
Sbjct: 185 HSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGV 244
Query: 194 LXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGT 253
+ N F V Y P S+F+V K+ A++ N+ +G RF M FE ++
Sbjct: 245 IASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMN-NKFIVGSRFTMRFEGDDFSE 303
Query: 254 RRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPP 313
RRY GTI G++D P WK S+WR+L+V WDE + + N+VS WEIE + + +
Sbjct: 304 RRYFGTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMSALNVPRSS 362
Query: 314 FFRSKHPRQADDDASDL 330
++K R+ ++ ++
Sbjct: 363 LLKNKRLREVNEFGQEI 379
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 429 (156.1 bits), Expect = 1.0e-55, Sum P(3) = 1.0e-55
Identities = 86/172 (50%), Positives = 113/172 (65%)
Query: 13 PNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLALKSNKPQTE--- 69
P +P +LC +++V AD ETDEV+A++TL P+P D + L +D L P ++
Sbjct: 49 PRVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLD--LENDAVLGLTPPSSDGNG 106
Query: 70 -------FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWT 122
F KTLT SD + GGFSVPR AE IFP LD+S +PP Q ++A+D+H W
Sbjct: 107 NGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWK 166
Query: 123 FRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANR 174
FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++F+R E L +GIRRA R
Sbjct: 167 FRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR 218
Score = 218 (81.8 bits), Expect = 1.0e-55, Sum P(3) = 1.0e-55
Identities = 75/252 (29%), Positives = 103/252 (40%)
Query: 157 FIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRAS 216
F+RD++ ++ N + + + F V Y PRAS
Sbjct: 237 FLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRAS 296
Query: 217 PSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRR-YMGTITGISDLDPVRWKNSQ 275
EF V A A+ S GMRF+M FETE+S +MGT++ + DP+RW NS
Sbjct: 297 TPEFCVKAADVRSAMRIRWCS-GMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSP 355
Query: 276 WRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFK 335
WR LQV WDE + RVS W +E V+ I PF PR+ + F
Sbjct: 356 WRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPF----SPRKKIRIPQPFEFPFH 411
Query: 336 RT-MPWIGDDFGVKDSQSLPGLSLVQWMNMQQN-PS-LANAMQSSYMHSLPG-SILQNLN 391
T P F G S+ N N P+ + A Q+ + P S+L +LN
Sbjct: 412 GTKFPIFSPGFANNGG----GESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSDLN 467
Query: 392 GGLSQMPQQNNL 403
LS N L
Sbjct: 468 --LSSYTGNNKL 477
Score = 37 (18.1 bits), Expect = 1.0e-55, Sum P(3) = 1.0e-55
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 856 SNNISSGAMLANYENSKDAQQELSSSIVSQS--FGVP 890
SNNIS + N +D ++ + S Q FG P
Sbjct: 502 SNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQP 538
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 373 (136.4 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 78/215 (36%), Positives = 116/215 (53%)
Query: 2 KKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLAL 61
+ ++D P + +LPSKL C ++ + D TDEVYAQ++L P D ++ + +
Sbjct: 60 RDELDHIRPIF-DLPSKLRCRVVAIDRKVDKNTDEVYAQISLMP----DTTEVMTHNTTM 114
Query: 62 KSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIW 121
+ +P FF K LTASD S GG +P++ A + FPPLD S Q L+A+DL+ W
Sbjct: 115 DTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEW 174
Query: 122 TFRHIYRGQPKRHLLTTG--WSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANX 179
+F+H++RG P+RH+ T+G WS+F + KRL GD + +R E +L GIRRA Q +
Sbjct: 175 SFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHI 234
Query: 180 XXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPR 214
M G++ F V Y PR
Sbjct: 235 PSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPR 269
Score = 171 (65.3 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 44/161 (27%), Positives = 78/161 (48%)
Query: 243 RMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEP 302
RM FE ++ +RY GTI G++D+ P WK+S+WR+L+V WDE + + N+VS W+IE
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 303 VTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWM 362
+ I + KH Q ++ + L N+ W + G + S + +
Sbjct: 328 LIPSSDISQSSLKKKKHWLQLNEIGATLSNL------WTCQEIGQRSMNSPISVPEFSYP 381
Query: 363 NMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNL 403
N ++ + + + HSL +N N P++ ++
Sbjct: 382 NAIEDSKFLSGLLLN--HSLLAIPNENYNSDQMIQPRKEDI 420
Score = 46 (21.3 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 862 GAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNG 909
GA L+N ++ Q +S +S VP+ ++ + I DS FL+G
Sbjct: 352 GATLSNLWTCQEIGQRSMNSPIS----VPEFSY---PNAIEDSKFLSG 392
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 381 (139.2 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 78/166 (46%), Positives = 106/166 (63%)
Query: 13 PNLPSKLLCILLNVTLHADTETDEVYAQMTLQPV------PS-YDREALLRSDLALKSNK 65
P+ S + CI+ ++ L AD TDEV+A + LQP+ P+ Y R D+ +NK
Sbjct: 57 PSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVD-DNNK 115
Query: 66 PQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRH 125
T F K LT SD + GGFSVPR A+ +FP L+F + PP Q+L D+H +W FRH
Sbjct: 116 VTT--FAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRH 173
Query: 126 IYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRR 171
IYRG P+RHLLTTGWS FV+ K+L AGDSV+F+R ++ +G+RR
Sbjct: 174 IYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219
Score = 142 (55.0 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 39/118 (33%), Positives = 58/118 (49%)
Query: 206 PFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 265
PF V + P A SEFVV A+ ++ S + G R +M ETE+S + I +
Sbjct: 283 PFEVVFYPAAGWSEFVVR-AEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTY 341
Query: 266 LDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVT-APFFICP-PPFFRSKHPR 321
+ W+ S W+ LQ+ WDE + RV+ W++E A P PP R K+P+
Sbjct: 342 QETGPWRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAKRLKYPQ 399
Score = 40 (19.1 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 838 MNPDPLLTK---GMMGLGKDFSNNISSGAMLANYENSKDA---QQELSSSIVS-QSFG 888
++P P L K MM G S+N+S + N + D + LS + S Q FG
Sbjct: 471 LSPLPDLGKVSTEMMNFGSPPSDNLSPNSNTTNLSSGNDLVGNRGPLSKKVNSIQLFG 528
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 415 (151.1 bits), Expect = 6.5e-37, Sum P(2) = 6.5e-37
Identities = 85/168 (50%), Positives = 113/168 (67%)
Query: 11 NYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPS--Y-DREALLRSDL-ALKSNKP 66
N P +P +LC +L + AD E+DEV+A++ L P+ Y D E D +SN
Sbjct: 57 NLP-IPPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSE 115
Query: 67 QTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHI 126
+T F KTLT SD + GGFSVPR AE IFP LD++ +PP Q ++A+D+H ++W FRHI
Sbjct: 116 KTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHI 175
Query: 127 YRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANR 174
YRG P+RHLLTTGWS FV+ K+L AGDS++F+R E L +GIRRA R
Sbjct: 176 YRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKR 223
Score = 215 (80.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 65/193 (33%), Positives = 88/193 (45%)
Query: 137 TTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGILXX 196
+ GW+ + G G S L DE L RR+N A+ + L
Sbjct: 233 SAGWNP-IGGS---CGYSSLLREDESNSL----RRSNCSLADRKGKVTAESVIEAATLAI 284
Query: 197 XXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRR- 255
+ PF V Y PRAS SEF V A+ S GMRF+M FETE+S
Sbjct: 285 ------SGRPFEVVYYPRASTSEFCVKALDARAAMRIPWCS-GMRFKMAFETEDSSRISW 337
Query: 256 YMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVT----APFFICP 311
+MGT++ ++ DP+RW NS WR LQV WDE + RV+ W +E V+ P
Sbjct: 338 FMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFS 397
Query: 312 PPFFRSKHPRQAD 324
PP + + P+ D
Sbjct: 398 PPRKKMRLPQHPD 410
Score = 52 (23.4 bits), Expect = 6.5e-37, Sum P(2) = 6.5e-37
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 325 DDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLV---QWMNMQQNPSLANAMQSSYMHS 381
D+ L NV KR PW+ + V + +P S + M + Q+P N + S + S
Sbjct: 366 DEPDLLQNV-KRVNPWLVEL--VSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPS 422
Query: 382 LPG----------SILQNLNGGLSQMPQQNNLQYTGQS 409
P S+L N+ GL Q + N QY G S
Sbjct: 423 FPSNPLIRSSPLSSVLDNVPVGL-QGARHNAHQYYGLS 459
Score = 37 (18.1 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 419 QLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSG 459
+L + P N + S +P P + + S + + N+P G
Sbjct: 404 RLPQHPDYNNLINSIPVPSFPSNPLIRSSPLSSVLDNVPVG 444
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 300 (110.7 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 68/169 (40%), Positives = 100/169 (59%)
Query: 2 KKDIDGQIPNYPNLPSKLLCILLNVTLHADTETDEVYAQMTLQPVPSYDREALLRSDLAL 61
+++++ PN +LPSKL C ++ + L + +DE Y ++TL P + + ++ ++
Sbjct: 62 REELNELQPNC-DLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTT---QVVIPTENE- 116
Query: 62 KSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIW 121
+P F K LTASDTS G FSVP + A + PPLD S PAQEL+A DLH N W
Sbjct: 117 NQFRPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQW 176
Query: 122 TFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIR 170
F+H YR P+ TTGW+ F + K+L GD ++F R E +L +GIR
Sbjct: 177 RFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 160 (61.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 55 LRSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFP-PL-DFSMQPPAQELM 112
L S + + K F KT+T SD +P+ AEK FP PL + ++ L
Sbjct: 167 LASMVVMTGFKTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLN 226
Query: 113 ARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR--DEKQQLLLG 168
D++ +W FR+ Y + ++LT GWS FV KRL AGD + F R D+ Q+ +G
Sbjct: 227 FEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIG 284
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 152 (58.6 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 40/119 (33%), Positives = 60/119 (50%)
Query: 63 SNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHD---N 119
S+ + F K +T SD +P++ AE+ FP LD S + + + + D N
Sbjct: 15 SSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTNDSNKGLLLNFEDRSGN 73
Query: 120 IWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDE--KQQLLLGIRRANRQP 176
W FR+ Y + +++T GWS FV K+L AGD V F RD K +L + RR + P
Sbjct: 74 SWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRRPKIP 132
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 148 (57.2 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 36/100 (36%), Positives = 50/100 (50%)
Query: 71 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQ 130
F K +T SD +P+ AEK FP ++ L D++ +W FR+ Y
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 247
Query: 131 PKRHLLTTGWSLFVSGKRLFAGDSVLFIRD--EKQQLLLG 168
+ ++LT GWS FV K L AGD V F R + QQL +G
Sbjct: 248 SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 148 (57.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 63 SNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWT 122
S++ + F K LT SD +P++ AE FP L+ + + +D + +W
Sbjct: 28 SSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFP-LEDNQNGTVLDF--QDKNGKMWR 84
Query: 123 FRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR 159
FR+ Y + +++T GWS FV K+LFAGD+V F R
Sbjct: 85 FRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYR 121
Score = 42 (19.8 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 817 VPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSG 862
VPV P +P A P P P TK + G D + SSG
Sbjct: 239 VPVFPAGRVPPSA----P-----PQPSTTKKLRLFGVDVEESSSSG 275
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 147 (56.8 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 39/108 (36%), Positives = 56/108 (51%)
Query: 66 PQTE-FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFR 124
P+ E F K +T SD +P++ AE+ FP LD S L +D + +W FR
Sbjct: 50 PEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFR 108
Query: 125 HIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR---DEKQQLLLGI 169
+ Y + +++T GWS FV K+L AGD V F R DE ++ L I
Sbjct: 109 YSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYI 156
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 34/89 (38%), Positives = 45/89 (50%)
Query: 71 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDNIWTFRHIYRGQ 130
F K +T SD +P++ AE+ FP LD S L DL W FR+ Y
Sbjct: 35 FDKVVTPSDVGKLNRLVIPKQHAERFFP-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNS 93
Query: 131 PKRHLLTTGWSLFVSGKRLFAGDSVLFIR 159
+ +++T GWS FV K+L AGD V F R
Sbjct: 94 SQSYVMTKGWSRFVKDKKLDAGDIVSFQR 122
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/112 (33%), Positives = 51/112 (45%)
Query: 71 FCKTLTASDTSTHGGFSVPRRAAEKIFP---------PLDFSMQPPAQELMARDLHDNIW 121
F K+LT SD +P++ AEK FP D S L D W
Sbjct: 46 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSW 105
Query: 122 TFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR--DEKQQLLLGIRR 171
FR+ Y + ++LT GWS FV K+L GD V F R + ++L +G RR
Sbjct: 106 RFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 33/96 (34%), Positives = 46/96 (47%)
Query: 65 KPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFP-PLDFSMQPPAQELMARDLHDNIWTF 123
K + F K +T SD +P++ AEK FP P + D++ +W F
Sbjct: 182 KTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRF 241
Query: 124 RHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR 159
R+ Y + ++LT GWS FV K L AGD V F R
Sbjct: 242 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFER 277
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 129 (50.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 35/105 (33%), Positives = 49/105 (46%)
Query: 71 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMA--RDLHDNIWTFRHIYR 128
F K LT SD +P++ AE+ FP + + L+ D W FR+ Y
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 97
Query: 129 GQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ--QLLLGIRR 171
+ ++LT GWS +V K L AGD VLF R + +G RR
Sbjct: 98 NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 793 HLQQNNSLSYNPQSTLRDA-SQDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKG 847
H+Q N SL Y P + + SQ G + ++ +G N++ L S +P G
Sbjct: 155 HVQSNASLQYYPHAGAQAVESQRG----NSKTLRLFGVNMECQLDSDWSEPSTPDG 206
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 36/96 (37%), Positives = 48/96 (50%)
Query: 71 FCKTLTASDTSTHGGFSVPRRAAEKIFP-PL---DFSMQPPAQELMARDLHDN---IWTF 123
F KT+T SD +P++ AEK FP P M P + + +L D +W F
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 124 RHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR 159
R+ Y + ++LT GWS FV K L AGD V F R
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFER 290
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 126 (49.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 42/137 (30%), Positives = 61/137 (44%)
Query: 56 RSDLALKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL----------DFSMQ 105
++D+A+ + F K+LT SD +P++ AEK FP D +
Sbjct: 17 QNDVAIAQRE---SLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATT 73
Query: 106 PPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRD--EKQ 163
L D W FR+ Y + ++LT GWS +V K L AGD V F R +
Sbjct: 74 EKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLH 133
Query: 164 QLLLGIRR---ANRQPA 177
+L +G RR A+ PA
Sbjct: 134 RLFIGWRRRGEASSSPA 150
>DICTYBASE|DDB_G0285837 [details] [associations]
symbol:DDB_G0285837 "BRWD group protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001487 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00297
SMART:SM00320 dictyBase:DDB_G0285837 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
EMBL:AAFI02000080 HSSP:Q03330 RefSeq:XP_638029.1
ProteinModelPortal:Q54MP8 EnsemblProtists:DDB0220685 GeneID:8625294
KEGG:ddi:DDB_G0285837 InParanoid:Q54MP8 OMA:DEITDIY Uniprot:Q54MP8
Length = 2200
Score = 134 (52.2 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 207 FTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDL 266
+TV Y+ P +++V +K K++ ++ RFRM + SG Y GTI ISD
Sbjct: 1350 YTVIYHVSDIP-DYLVLASKVRKSMLTDWTVPNKRFRMFYPA--SGW--YNGTIIEISDS 1404
Query: 267 DPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIE 301
DP+ + NS W N++V WD++ E+ +RV+ WEI+
Sbjct: 1405 DPL-FPNSPWENIKVLWDDT---EEEDRVNYWEID 1435
Score = 61 (26.5 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 363 NMQQNPSLANAMQSS-YMHSLP-GSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQL 420
N N S + S+ YM + P S +QN Q PQ NN+ Y Q P +
Sbjct: 1586 NNTSNYSYLDPNNSNMYMQTYPQNSTMQN-----QQQPQLNNIYYNSQLQPTNYNYTNNF 1640
Query: 421 AKLPSTVNPLGSNIL 435
S N SNI+
Sbjct: 1641 NTNYSNFNNSSSNIM 1655
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 26/118 (22%), Positives = 42/118 (35%)
Query: 698 TINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQ 757
+I+ H ++ G+ + +S LL+PS E N N + + + T
Sbjct: 1899 SISDSEHDNSKTGKNITRS---LLSPSEDEG-GINVNRTPSKRGRKKANATTTTTTTTTT 1954
Query: 758 GFFTPQTYL-NGAATQTDYLDXXXXXXXVCLSQNDVHLQQNNSLSYNPQSTLRDASQD 814
TP L G T++ S +D + NNS N L D+ D
Sbjct: 1955 TSSTPSKRLITGRLTRSRSNQSNEE------SDDDGFIDDNNSSHQNGGKILDDSDND 2006
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 928 791 0.00096 121 3 11 23 0.44 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 620 (66 KB)
Total size of DFA: 383 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 69.51u 0.18s 69.69t Elapsed: 00:00:04
Total cpu time: 69.51u 0.18s 69.69t Elapsed: 00:00:04
Start: Mon May 20 19:56:02 2013 End: Mon May 20 19:56:06 2013