BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002400
(927 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 12/195 (6%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
EW + ++ L IAEGC + MI L +++ ++ D VR + + + +
Sbjct: 410 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN-CTPDILTPYLDGIVSKL 413
+ + L+ L+ + D N RVQ A SA E CT L PYL I+ L
Sbjct: 470 VSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL 526
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQK--YYDAVMPYL--KAILVNANDKSNRML 469
+ + A+ ++ADS K Y +MP L K ++ DK L
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 586
Query: 470 RAKSMECISLVGMAV 484
+EC+S V A+
Sbjct: 587 ----LECLSSVATAL 597
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 6/149 (4%)
Query: 703 KDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCA 762
+DK E R+ + + D+ + C + ++P L N + V A + IG +
Sbjct: 677 QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS 736
Query: 763 EFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSA--LGKICQFHRDSIDAAQ 820
G +P + L +L +I PN + + + A++ LG +C + Q
Sbjct: 737 IQMGIEMQPYIPMVLHQLVEIINRPN---TPKTLLENTAITIGRLGYVCPQEVAPM-LQQ 792
Query: 821 VVPAWLSCLPLKGDLIEAKVVHAQLCSMV 849
+ W + L D E +C+M+
Sbjct: 793 FIRPWCTSLRNIRDNEEKDSAFRGICTMI 821
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 12/195 (6%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
EW + ++ L IAEGC + MI L +++ ++ D VR + + + +
Sbjct: 385 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 444
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN-CTPDILTPYLDGIVSKL 413
+ + L+ L+ + D N RVQ A SA E CT L PYL I+ L
Sbjct: 445 VSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL 501
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQK--YYDAVMPYL--KAILVNANDKSNRML 469
+ + A+ ++ADS K Y +MP L K ++ DK L
Sbjct: 502 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 561
Query: 470 RAKSMECISLVGMAV 484
+EC+S V A+
Sbjct: 562 ----LECLSSVATAL 572
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 6/149 (4%)
Query: 703 KDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCA 762
+DK E R+ + + D+ + C + ++P L N + V A + IG +
Sbjct: 652 QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS 711
Query: 763 EFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSA--LGKICQFHRDSIDAAQ 820
G +P + L +L +I PN + + + A++ LG +C + Q
Sbjct: 712 IQMGIEMQPYIPMVLHQLVEIINRPN---TPKTLLENTAITIGRLGYVCPQEVAPM-LQQ 767
Query: 821 VVPAWLSCLPLKGDLIEAKVVHAQLCSMV 849
+ W + L D E +C+M+
Sbjct: 768 FIRPWCTSLRNIRDNEEKDSAFRGICTMI 796
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 12/195 (6%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
EW + ++ L IAEGC + MI L +++ ++ D VR + + + +
Sbjct: 372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN-CTPDILTPYLDGIVSKL 413
+ + L+ L+ + D N RVQ A SA E CT L PYL I+ L
Sbjct: 432 VSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL 488
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQK--YYDAVMPYL--KAILVNANDKSNRML 469
+ + A+ ++ADS K Y +MP L K ++ DK L
Sbjct: 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 548
Query: 470 RAKSMECISLVGMAV 484
+EC+S V A+
Sbjct: 549 ----LECLSSVATAL 559
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 25/250 (10%)
Query: 603 ADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNE 662
A L+ GF P+ + V V L V+K AM L +A + Q + ++
Sbjct: 556 ATALQSGFLPYCEPVYQRCVNL--------VQKTLAQAM---LNNA----QPDQYEAPDK 600
Query: 663 SYVKQLTDYIIPALVEALHKEPEIDICAS-MLDALNESIQGKDKTAEERRIAICIFDDVM 721
++ D ++ L E L E + S +L + + +Q DK E R+ + + D+
Sbjct: 601 DFMIVALD-LLSGLAEGLGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLT 657
Query: 722 EHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLD 781
+ C + ++P L N + V A + IG + G +P + L +L
Sbjct: 658 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV 717
Query: 782 FVIRHPNALHSDNVMAYDNAVSA--LGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAK 839
+I PN + + + A++ LG +C + Q + W + L D E
Sbjct: 718 EIINRPN---TPKTLLENTAITIGRLGYVCPQEVAPM-LQQFIRPWCTSLRNIRDNEEKD 773
Query: 840 VVHAQLCSMV 849
+C+M+
Sbjct: 774 SAFRGICTMI 783
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 407 DGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDK 464
D +++ LL + Q+ G VQE AL A++++ + G+F KY +A P+L L N
Sbjct: 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN---- 660
Query: 465 SNRMLRAKSMECISLVGMAVG------KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYM 518
A+ C++ VG+ VG + +VM++L+ G++ +
Sbjct: 661 -----YAEYQVCLAAVGL-VGDLCRALQSNILPFCDEVMQLLLENLGNE-NVHRSVKPQI 713
Query: 519 LQAWARLCKCLGQEFIPYMSVVMPPLLQSAQ 549
L + + +G EF Y+ VV+ L Q++Q
Sbjct: 714 LSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L + C DD++ H LPF+ E + K+PD
Sbjct: 353 MLL-------------------STCCEDDIVPHV-----------LPFIKE--HIKNPDW 380
Query: 750 -VRQAAVYGIGVCAEF-GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E + KPLV +A+ L +++ P +V+ D +G+
Sbjct: 381 RYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDP------SVVVRDTTAWTVGR 434
Query: 808 ICQF 811
IC+
Sbjct: 435 ICEL 438
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 407 DGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDK 464
D +++ LL + Q+ G VQE AL A++++ + G+F KY +A P+L L N
Sbjct: 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN---- 660
Query: 465 SNRMLRAKSMECISLVGMAVG------KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYM 518
A+ C++ VG+ VG + +VM++L+ G++ +
Sbjct: 661 -----YAEYQVCLAAVGL-VGDLCRALQSNIIPFCDEVMQLLLENLGNE-NVHRSVKPQI 713
Query: 519 LQAWARLCKCLGQEFIPYMSVVMPPLLQSAQ 549
L + + +G EF Y+ VV+ L Q++Q
Sbjct: 714 LSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L A C DD++ H LPF+ E + K+PD
Sbjct: 353 MLL-------------------ATCCEDDIVPHV-----------LPFIKE--HIKNPDW 380
Query: 750 -VRQAAVYGIGVCAEF-GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E S KPLV +A+ L +++ P +V+ D A +G+
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP------SVVVRDTAAWTVGR 434
Query: 808 ICQF 811
IC+
Sbjct: 435 ICEL 438
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 407 DGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDK 464
D +++ LL + Q+ G VQE AL A++++ + G+F KY +A P+L L N
Sbjct: 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN---- 660
Query: 465 SNRMLRAKSMECISLVGMAVG------KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYM 518
A+ C++ VG+ VG + +VM++L+ G++ +
Sbjct: 661 -----YAEYQVCLAAVGL-VGDLCRALQSNIIPFCDEVMQLLLENLGNE-NVHRSVKPQI 713
Query: 519 LQAWARLCKCLGQEFIPYMSVVMPPLLQSAQ 549
L + + +G EF Y+ VV+ L Q++Q
Sbjct: 714 LSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L A C DD++ H LPF+ E + K+PD
Sbjct: 353 MLL-------------------ATCCEDDIVPHV-----------LPFIKE--HIKNPDW 380
Query: 750 -VRQAAVYGIGVCAEF-GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E S KPLV +A+ L +++ P +V+ D A +G+
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP------SVVVRDTAAWTVGR 434
Query: 808 ICQF 811
IC+
Sbjct: 435 ICEL 438
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 407 DGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDK 464
D +++ LL + Q+ G VQE AL A++++ + G+F KY +A P+L L N
Sbjct: 480 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN---- 535
Query: 465 SNRMLRAKSMECISLVGMAVG------KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYM 518
A+ C++ VG+ VG + +VM++L+ G++ +
Sbjct: 536 -----YAEYQVCLAAVGL-VGDLCRALQSNIIPFCDEVMQLLLENLGNE-NVHRSVKPQI 588
Query: 519 LQAWARLCKCLGQEFIPYMSVVMPPLLQSAQ 549
L + + +G EF Y+ VV+ L Q++Q
Sbjct: 589 LSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 619
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 168 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 227
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L A C DD++ H LPF+ E + K+PD
Sbjct: 228 MLL-------------------ATCCEDDIVPH-----------VLPFIKE--HIKNPDW 255
Query: 750 -VRQAAVYGIGVCAEF-GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E S KPLV +A+ L +++ P +V+ D A +G+
Sbjct: 256 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP------SVVVRDTAAWTVGR 309
Query: 808 ICQF 811
IC+
Sbjct: 310 ICEL 313
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L A C DD++ H LPF+ E + K+PD
Sbjct: 353 MLL-------------------ATCCEDDIVPH-----------VLPFIKE--HIKNPDW 380
Query: 750 -VRQAAVYGIGVCAEFG-GSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E S KPLV +A+ L +++ P +V+ D A +G+
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP------SVVVRDTAAWTVGR 434
Query: 808 ICQF 811
IC+
Sbjct: 435 ICEL 438
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L A C DD++ H LPF+ E + K+PD
Sbjct: 353 MLL-------------------ATCCEDDIVPH-----------VLPFIKE--HIKNPDW 380
Query: 750 -VRQAAVYGIGVCAEFG-GSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E S KPLV +A+ L +++ P +V+ D A +G+
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP------SVVVRDTAAWTVGR 434
Query: 808 ICQF 811
IC+
Sbjct: 435 ICEL 438
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L A C DD++ H LPF+ E + K+PD
Sbjct: 353 MLL-------------------ATCCEDDIVPH-----------VLPFIKE--HIKNPDW 380
Query: 750 -VRQAAVYGIGVCAEFG-GSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E S KPLV +A+ L +++ P +V+ D A +G+
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP------SVVVRDTAAWTVGR 434
Query: 808 ICQF 811
IC+
Sbjct: 435 ICEL 438
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
EW + ++ L IAEGC + I L +++ ++ D VR + + + +
Sbjct: 410 EWVVKESGILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN-CTPDILTPYLDGIVSKL 413
+ + L L+ + D N RVQ A SA E CT L PYL I+ L
Sbjct: 470 VSQPPDTYLKPLXTELLKRILD-SNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL 526
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQK--YYDAVMPYLKAILVNANDKSNRMLRA 471
+ + A+ ++ADS K Y + P L D+ +
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKDEDKDLFPL 586
Query: 472 KSMECISLVGMAV 484
+EC+S V A+
Sbjct: 587 --LECLSSVATAL 597
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 398 TPDILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQGQFQKYYDAVMPYLKA 456
+P + P D ++ LL+ +++ A++++A S F+KY + PYL
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL-- 644
Query: 457 ILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTS 516
+ A ++ + + ++ I+ + ++ +D FR + +M VL + S A
Sbjct: 645 --LKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMI-SNPNARRELKP 700
Query: 517 YMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKP 552
+L + + +G +FIPY++ +M + + KP
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
+W + L A+ C + L+ V+ V + + R R AA+ A G +
Sbjct: 344 DWNVSMSAGACLQLFAQNCGNHI---LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI-LTPYLDGIVSKL 413
+T + H+ LP+++ M+D Q+ +V+ A + +++ I +L G+V
Sbjct: 401 DKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKS 473
L+ LQ+ ++ + T + V ++ Y+ P L L+ A ++ + A++
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYN-FYPALVDGLIGAANRIDNEFNARA 518
Query: 474 MECISLVGMA-VGKDKFRDDAKQVMEVLMSLQGSQMEADD 512
+L M D + + + +M G M D+
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE 558
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 650 LAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPE-IDICASMLDALNESIQGKDKTAE 708
++V++ Q + +++L I+ L + K P ++ A ML L + K +A
Sbjct: 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA- 612
Query: 709 ERRIAICIFDDVMEHCREAAL-------KYYDTYLPFLLEACNDKHPDVRQAAVYGIGVC 761
I DDV A KY +T+ P+LL+A N V ++ +G
Sbjct: 613 ------FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV---SITAVGFI 663
Query: 762 AEFGGSV---FKPLVGEALSRLDFVIRHPNA 789
A+ S+ F+ ++ L +I +PNA
Sbjct: 664 ADISNSLEEDFRRYSDAMMNVLAQMISNPNA 694
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 398 TPDILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQGQFQKYYDAVMPYLKA 456
+P + P D ++ LL+ +++ A++++A S F+KY + PYL
Sbjct: 587 SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYL-- 644
Query: 457 ILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTS 516
+ A ++ + + ++ I+ + ++ +D FR + +M VL + S A
Sbjct: 645 --LKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQMI-SNPNARRELKP 700
Query: 517 YMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKP 552
+L + + +G +FIPY++ +M + + KP
Sbjct: 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
+W + L A+ C + L+ V+ V + + R R AA+ A G +
Sbjct: 344 DWNVSMSAGACLQLFAQNCGNHI---LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI-LTPYLDGIVSKL 413
+T + H+ LP+++ M+D Q+ +V+ A + +++ I +L G+V
Sbjct: 401 DKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKS 473
L+ LQ+ ++ + T + V ++ Y+ P L L+ A ++ + A++
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYN-FYPALVDGLIGAANRIDNEFNARA 518
Query: 474 MECISLVGMA-VGKDKFRDDAKQVMEVLMSLQGSQMEADD 512
+L M D + + + +M G M D+
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE 558
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 650 LAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPE-IDICASMLDALNESIQGKDKTAE 708
++V++ Q + +++L I+ L + K P ++ A ML L + K +A
Sbjct: 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA- 612
Query: 709 ERRIAICIFDDVMEHCREAAL-------KYYDTYLPFLLEACNDKHPDVRQAAVYGIGVC 761
I DDV A KY +T+ P+LL+A N V ++ +G
Sbjct: 613 ------FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV---SITAVGFI 663
Query: 762 AEFGGSV---FKPLVGEALSRLDFVIRHPNA 789
A+ S+ F+ ++ L +I +PNA
Sbjct: 664 ADISNSLEEDFRRYSDAMMNVLAQMISNPNA 694
>pdb|2ZBK|A Chain A, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|C Chain C, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|E Chain E, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|G Chain G, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 389
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 270 LVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVL 329
+DV + V E +AVF A W+++ ++LI A + ++ ++ L++ + + +
Sbjct: 197 FIDVDAEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPV 256
Query: 330 NSFQDPHPRVRWA--AINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAA 387
D P W ++ IG +S E + L +G D F N R + + +
Sbjct: 257 YILTDADP-YGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMG--DIFGNSRKKPYLS 313
Query: 388 SA 389
A
Sbjct: 314 EA 315
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 60/184 (32%)
Query: 650 LAVEKGQS--QGR-----NESYVKQLTDYIIPALVEALHKEPE------------IDICA 690
LA+E ++ QGR ++ Y K Y++P L + L K+ E +C
Sbjct: 299 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 358
Query: 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPD- 749
+L + C DD++ H LPF+ E + K+PD
Sbjct: 359 XLL-------------------STCCEDDIVPHV-----------LPFIKE--HIKNPDW 386
Query: 750 -VRQAAVYGIGVCAEFG-GSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
R AAV G E + KPLV +A L + + P +V+ D +G+
Sbjct: 387 RYRDAAVXAFGSILEGPEPNQLKPLVIQAXPTLIELXKDP------SVVVRDTTAWTVGR 440
Query: 808 ICQF 811
IC+
Sbjct: 441 ICEL 444
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue
From Pseudomonas Aeruginosa
pdb|3TTN|B Chain B, Crystal Structures Of Polyamine Receptors Spud And Spue
From Pseudomonas Aeruginosa
Length = 340
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 664 YVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGK 703
++ TDYI P ++ KE ID+ + D+ NE+++GK
Sbjct: 8 HIYNWTDYIAPTTLKDFTKESGIDVSYDVFDS-NETLEGK 46
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue
pdb|3TTL|B Chain B, Crystal Structure Of Apo-Spue
Length = 340
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 664 YVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGK 703
++ TDYI P ++ KE ID+ + D+ NE+++GK
Sbjct: 8 HIYNWTDYIAPTTLKDFTKESGIDVSYDVFDS-NETLEGK 46
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 245 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 304
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 305 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 360
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 361 SAKDTKIIQVILDAISNIFQAAEKLGETEK 390
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIG 348
L A E L A+ I G + K +D V S +P ++ A +
Sbjct: 258 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 317
Query: 349 QLSTDLGPELQTQFHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYL 406
++ ++Q +H L+P LVG + DF + Q AA A+ N++ T + + YL
Sbjct: 318 NITAGRQDQIQQVVNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YL 373
Query: 407 D--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--GQFQK 445
GI+ L+ LL + + L A++++ +++ G+ +K
Sbjct: 374 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 416
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 240 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 299
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 300 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 355
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 356 SAKDTKIIQVILDAISNIFQAAEKLGETEK 385
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIG 348
L A E L A+ I G + K +D V S +P ++ A +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 349 QLSTDLGPELQTQFHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYL 406
++ ++Q +H L+P LVG + DF + Q AA A+ N++ T + + YL
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YL 397
Query: 407 D--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--GQFQK 445
GI+ L+ LL + + L A++++ +++ G+ +K
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 440
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 240 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 299
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 300 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 355
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 356 SAKDTKIIQVILDAISNIFQAAEKLGETEK 385
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 311 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 366
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 367 SAKDTKIIQVILDAISNIFQAAEKLGETEK 396
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 244 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 303
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 304 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 359
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 360 SAKDTKIIQVILDAISNIFQAAEKLGETEK 389
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 244 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 303
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 304 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 359
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 360 SAKDTKIIQVILDAISNIFQAAEKLGETEK 389
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIG 348
L A E L A+ I G + K +D V S +P ++ A +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 349 QLSTDLGPELQTQFHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYL 406
++ ++Q +H L+P LVG + DF + Q AA A+ N++ T + + YL
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YL 397
Query: 407 D--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--GQFQK 445
GI+ L+ LL + + L A++++ +++ G+ +K
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 440
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 279 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 338
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 339 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 394
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 395 SAKDTKIIQVILDAISNIFQAAEKLGETEK 424
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 245 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 304
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 305 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 360
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 361 SAKDTKIIQVILDAISNIFQAAEKLGETEK 390
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 281 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 340
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 341 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 396
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 397 SAKDTKIIQVILDAISNIFQAAEKLGETEK 426
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 245 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 304
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 305 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 360
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 361 SAKDTKIIQVILDAISNIFQAAEKLGETEK 390
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 355 VNHGLVPFLVGVLSKADF---KTQKEAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 410
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEK 440
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQ 361
L A+ I G + K +D V S +P ++ A + ++ ++Q
Sbjct: 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 373
Query: 362 FHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLL 417
+H L+P LVG + DF + Q AA A+ N++ T + + YL GI+ L+ LL
Sbjct: 374 VNHGLVPFLVGVLSKADF---KTQKAAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMNLL 429
Query: 418 QNGKQMVQEGALTALASVADSSQ--GQFQK 445
+ + L A++++ +++ G+ +K
Sbjct: 430 SAKDTKIIQVILDAISNIFQAAEKLGETEK 459
>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
Length = 323
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 720 VMEHCREAALKYYD-TYLPFLLEACNDKHPDV 750
V+ C ALKY D YL L EA +KHPD+
Sbjct: 45 VILQCSRGALKYSDMIYLKKLCEAALEKHPDI 76
>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
Length = 323
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 720 VMEHCREAALKYYD-TYLPFLLEACNDKHPDV 750
V+ C ALKY D YL L EA +KHPD+
Sbjct: 45 VILQCSRGALKYSDMIYLKKLCEAALEKHPDI 76
>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
Length = 323
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 720 VMEHCREAALKYYD-TYLPFLLEACNDKHPDV 750
V+ C ALKY D YL L EA +KHPD+
Sbjct: 45 VILQCSRGALKYSDMIYLKKLCEAALEKHPDI 76
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 335 PHPRVRWAAINAIGQLSTDLGPELQTQ--FHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392
P P V A+ +G + T G + QTQ H+ LP L+ + ++ A + N
Sbjct: 260 PSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 317
Query: 393 FSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446
+ I GI+ L+ LLQ + +++ A A+++ KY
Sbjct: 318 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 371
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 335 PHPRVRWAAINAIGQLSTDLGPELQTQ--FHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392
P P V A+ +G + T G + QTQ H+ LP L+ + ++ A + N
Sbjct: 298 PSPSVLIPALRTVGNIVT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355
Query: 393 FSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446
+ I GI+ L+ LLQ + +++ A A+++ KY
Sbjct: 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 409
>pdb|1KR0|A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 765 GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
G S +PL L +DF I H + L+ D++ Y +A S GK
Sbjct: 107 GKSSSRPLGDAVLDGIDFAIEHGSTLYWDDLARYLSAYSKQGK 149
>pdb|3EZI|A Chain A, Crystal Structure Of The E. Coli Histidine Kinase Narx
Sensor Domain Without Ligand
pdb|3EZI|B Chain B, Crystal Structure Of The E. Coli Histidine Kinase Narx
Sensor Domain Without Ligand
pdb|3EZI|C Chain C, Crystal Structure Of The E. Coli Histidine Kinase Narx
Sensor Domain Without Ligand
pdb|3EZI|D Chain D, Crystal Structure Of The E. Coli Histidine Kinase Narx
Sensor Domain Without Ligand
Length = 107
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 623 PLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHK 682
PL+K E+ + A SA EL R+A+ + Q QG + + +L IPAL+ A ++
Sbjct: 31 PLIK-----EMEQTAFSA--ELTRAAERDGQLAQLQGLQDYWRNEL----IPALMRAQNR 79
Query: 683 EPEIDICASMLDALNESIQGKDKTAEER 710
E + + L++ + G D+T E R
Sbjct: 80 ETVSADVSQFVAGLDQLVSGFDRTTEMR 107
>pdb|1KQY|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH PENTA-Nag
pdb|1KQZ|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 765 GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
G S +PL L +DF I H + L+ D++ Y +A S GK
Sbjct: 107 GKSSSRPLGDAVLDGIDFAIAHGSTLYWDDLARYLSAYSKQGK 149
>pdb|1KR1|A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 765 GGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGK 807
G S +PL L +DF I H + L+ D++ Y +A S GK
Sbjct: 107 GKSSSRPLGDAVLDGIDFAIAHGSTLYWDDLARYLSAYSKQGK 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,884,427
Number of Sequences: 62578
Number of extensions: 845033
Number of successful extensions: 2458
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2374
Number of HSP's gapped (non-prelim): 124
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)