Query 002400
Match_columns 927
No_of_seqs 415 out of 3326
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 23:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 5E-120 1E-124 995.1 91.4 890 17-927 1-1075(1075)
2 KOG2023 Nuclear transport rece 100.0 5.4E-72 1.2E-76 573.5 51.7 740 19-926 12-884 (885)
3 KOG1241 Karyopherin (importin) 100.0 3.8E-53 8.3E-58 443.1 62.7 702 21-763 2-855 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 5.4E-44 1.2E-48 361.2 62.8 688 18-815 2-814 (858)
5 KOG2171 Karyopherin (importin) 100.0 2.3E-35 5.1E-40 326.7 66.5 729 25-828 84-1021(1075)
6 KOG1991 Nuclear transport rece 100.0 1.4E-27 3.1E-32 259.7 70.4 461 17-502 1-592 (1010)
7 KOG2023 Nuclear transport rece 100.0 3.5E-29 7.5E-34 258.9 46.9 688 55-925 11-852 (885)
8 KOG1824 TATA-binding protein-i 100.0 2.3E-26 5E-31 246.9 65.1 804 19-902 46-1039(1233)
9 KOG1993 Nuclear transport rece 100.0 3.3E-26 7.1E-31 241.9 63.5 770 22-926 2-976 (978)
10 KOG1992 Nuclear export recepto 100.0 3.5E-26 7.6E-31 242.9 60.4 509 17-544 2-685 (960)
11 KOG1241 Karyopherin (importin) 100.0 4.1E-26 8.8E-31 240.8 59.3 686 66-849 12-853 (859)
12 KOG1824 TATA-binding protein-i 100.0 1.4E-26 2.9E-31 248.6 47.9 636 240-916 14-701 (1233)
13 KOG2274 Predicted importin 9 [ 100.0 5.6E-23 1.2E-27 221.2 56.4 508 18-548 2-668 (1005)
14 COG5215 KAP95 Karyopherin (imp 99.9 9.6E-22 2.1E-26 200.6 55.1 599 26-679 100-839 (858)
15 COG5656 SXM1 Importin, protein 99.9 1.2E-17 2.6E-22 176.2 70.7 402 19-437 2-528 (970)
16 KOG0213 Splicing factor 3b, su 99.9 3.6E-18 7.8E-23 179.6 59.0 689 21-898 364-1141(1172)
17 KOG0213 Splicing factor 3b, su 99.9 1.8E-18 4E-23 181.8 50.6 685 116-913 375-1122(1172)
18 PLN03200 cellulose synthase-in 99.9 4.5E-17 9.7E-22 197.2 63.5 783 19-903 12-864 (2102)
19 KOG0915 Uncharacterized conser 99.9 3.1E-18 6.6E-23 194.4 48.7 576 144-830 819-1450(1702)
20 PLN03200 cellulose synthase-in 99.9 4.1E-17 8.8E-22 197.6 58.0 685 22-811 60-812 (2102)
21 COG5181 HSH155 U2 snRNP splice 99.9 3.9E-16 8.5E-21 161.3 50.8 691 18-898 166-946 (975)
22 COG5181 HSH155 U2 snRNP splice 99.8 4.4E-17 9.4E-22 168.2 37.7 550 294-925 329-942 (975)
23 COG5101 CRM1 Importin beta-rel 99.8 3.6E-13 7.8E-18 140.1 64.3 191 16-217 10-225 (1053)
24 KOG1242 Protein containing ada 99.8 2.1E-16 4.5E-21 166.6 40.1 519 145-788 19-548 (569)
25 KOG1242 Protein containing ada 99.8 4.6E-15 9.9E-20 156.7 39.5 493 57-638 58-556 (569)
26 KOG2021 Nuclear mRNA export fa 99.8 8.2E-13 1.8E-17 140.5 54.2 541 20-623 3-783 (980)
27 KOG0915 Uncharacterized conser 99.8 6E-15 1.3E-19 168.1 39.8 507 64-647 827-1428(1702)
28 COG5657 CSE1 CAS/CSE protein i 99.8 1E-12 2.2E-17 143.6 53.5 210 21-242 5-239 (947)
29 KOG2022 Nuclear transport rece 99.7 8.6E-10 1.9E-14 120.5 78.4 770 18-918 5-889 (982)
30 PF01602 Adaptin_N: Adaptin N 99.7 3.8E-13 8.2E-18 154.8 46.7 518 101-762 2-523 (526)
31 KOG0166 Karyopherin (importin) 99.7 2.9E-14 6.2E-19 150.0 32.4 353 66-441 77-440 (514)
32 KOG1991 Nuclear transport rece 99.7 3.2E-10 6.9E-15 125.7 58.3 413 24-457 93-593 (1010)
33 KOG0212 Uncharacterized conser 99.7 2.7E-12 5.8E-17 132.6 38.2 481 289-874 50-541 (675)
34 KOG1248 Uncharacterized conser 99.6 1.7E-08 3.8E-13 114.5 70.1 749 55-924 94-920 (1176)
35 PTZ00429 beta-adaptin; Provisi 99.6 1.3E-11 2.7E-16 140.5 46.3 485 190-803 38-539 (746)
36 PF01602 Adaptin_N: Adaptin N 99.6 6.7E-12 1.5E-16 144.5 43.6 511 20-644 7-522 (526)
37 KOG0212 Uncharacterized conser 99.6 6.5E-12 1.4E-16 129.8 36.5 411 288-778 6-422 (675)
38 KOG0166 Karyopherin (importin) 99.6 3.3E-13 7.2E-18 142.1 27.4 357 105-484 68-438 (514)
39 PTZ00429 beta-adaptin; Provisi 99.6 3.5E-10 7.5E-15 128.9 50.8 505 101-759 34-542 (746)
40 KOG1248 Uncharacterized conser 99.5 7.1E-08 1.5E-12 109.7 59.4 365 363-785 516-921 (1176)
41 COG5064 SRP1 Karyopherin (impo 99.5 3.8E-12 8.2E-17 123.1 22.1 361 57-441 74-447 (526)
42 KOG0211 Protein phosphatase 2A 99.5 1.8E-10 4E-15 129.3 37.3 503 55-648 122-627 (759)
43 KOG0211 Protein phosphatase 2A 99.4 3.3E-09 7.3E-14 119.4 41.5 564 140-811 79-665 (759)
44 PRK09687 putative lyase; Provi 99.4 4.1E-11 9E-16 121.8 24.0 251 106-433 26-278 (280)
45 PRK13800 putative oxidoreducta 99.4 4.6E-11 1E-15 143.3 28.1 289 7-392 608-896 (897)
46 PRK09687 putative lyase; Provi 99.4 9E-11 2E-15 119.4 23.8 253 145-478 25-278 (280)
47 PRK13800 putative oxidoreducta 99.3 3E-10 6.4E-15 136.4 28.4 274 56-434 623-896 (897)
48 KOG0891 DNA-dependent protein 99.3 7.9E-08 1.7E-12 120.1 49.6 672 148-899 56-763 (2341)
49 KOG1943 Beta-tubulin folding c 99.3 1.8E-07 3.9E-12 105.3 45.3 472 224-811 65-612 (1133)
50 KOG1060 Vesicle coat complex A 99.3 4.2E-08 9.1E-13 106.1 37.8 298 107-451 39-364 (968)
51 PF10508 Proteasom_PSMB: Prote 99.3 4.6E-08 9.9E-13 109.3 39.4 393 108-528 43-463 (503)
52 KOG2274 Predicted importin 9 [ 99.3 7.7E-06 1.7E-10 90.7 60.9 691 66-922 15-803 (1005)
53 PF10508 Proteasom_PSMB: Prote 99.3 3.8E-08 8.3E-13 109.9 37.4 396 293-764 49-463 (503)
54 KOG2081 Nuclear transport regu 99.3 2.1E-08 4.5E-13 105.3 32.3 379 38-440 2-539 (559)
55 COG5064 SRP1 Karyopherin (impo 99.2 2.5E-10 5.4E-15 110.7 16.4 314 143-481 114-442 (526)
56 KOG1943 Beta-tubulin folding c 99.2 1E-06 2.3E-11 99.3 46.7 578 117-812 188-883 (1133)
57 KOG1992 Nuclear export recepto 99.2 1.4E-05 3E-10 87.7 58.8 558 14-633 81-780 (960)
58 KOG1240 Protein kinase contain 99.2 2.8E-09 6.1E-14 120.1 23.1 278 144-441 423-729 (1431)
59 KOG2022 Nuclear transport rece 99.2 1.7E-05 3.6E-10 87.9 50.5 159 296-460 481-643 (982)
60 KOG0414 Chromosome condensatio 99.2 3.9E-05 8.5E-10 87.9 55.5 184 614-852 917-1104(1251)
61 KOG1993 Nuclear transport rece 99.1 3E-05 6.5E-10 84.8 51.0 406 296-785 458-886 (978)
62 KOG1062 Vesicle coat complex A 99.1 1.5E-05 3.4E-10 87.3 46.9 472 289-920 77-571 (866)
63 PF12460 MMS19_C: RNAPII trans 99.1 3.2E-07 6.9E-12 100.5 35.1 387 326-783 2-414 (415)
64 KOG1062 Vesicle coat complex A 99.1 4.7E-06 1E-10 91.2 41.3 394 106-532 110-549 (866)
65 PF12348 CLASP_N: CLASP N term 99.1 1.2E-08 2.5E-13 102.8 19.9 182 292-485 17-209 (228)
66 KOG0392 SNF2 family DNA-depend 99.1 5.9E-06 1.3E-10 94.5 42.5 140 66-212 88-236 (1549)
67 KOG4224 Armadillo repeat prote 99.1 1.1E-08 2.4E-13 100.4 18.6 361 65-441 95-497 (550)
68 PF12755 Vac14_Fab1_bd: Vacuol 99.1 2.3E-09 5E-14 88.3 11.5 94 298-394 2-95 (97)
69 KOG1060 Vesicle coat complex A 99.0 1.9E-06 4.1E-11 93.7 35.7 299 114-454 153-475 (968)
70 COG5240 SEC21 Vesicle coat com 99.0 2.2E-05 4.8E-10 82.5 41.7 527 101-762 20-554 (898)
71 PF03378 CAS_CSE1: CAS/CSE pro 99.0 1.3E-06 2.8E-11 94.4 32.7 387 398-924 16-435 (435)
72 KOG1059 Vesicle coat complex A 98.9 4.5E-05 9.7E-10 82.6 39.2 225 127-376 129-382 (877)
73 KOG1020 Sister chromatid cohes 98.9 0.00039 8.4E-09 81.9 49.3 360 105-485 818-1204(1692)
74 PF12348 CLASP_N: CLASP N term 98.9 8.7E-08 1.9E-12 96.4 18.3 203 704-922 18-228 (228)
75 KOG4224 Armadillo repeat prote 98.9 3.1E-08 6.8E-13 97.4 13.0 349 108-484 90-448 (550)
76 KOG1059 Vesicle coat complex A 98.9 0.00016 3.4E-09 78.5 41.4 108 594-725 318-426 (877)
77 KOG4535 HEAT and armadillo rep 98.8 4.7E-06 1E-10 85.4 28.4 246 139-398 34-327 (728)
78 KOG2020 Nuclear transport rece 98.8 0.00075 1.6E-08 79.5 60.8 143 22-174 12-164 (1041)
79 PF03810 IBN_N: Importin-beta 98.8 2.7E-08 5.9E-13 80.1 8.2 67 40-113 1-76 (77)
80 KOG1820 Microtubule-associated 98.8 1.7E-06 3.7E-11 98.8 25.2 200 285-497 256-458 (815)
81 PF12460 MMS19_C: RNAPII trans 98.8 4.6E-05 1E-09 83.6 35.1 385 145-547 1-414 (415)
82 KOG1077 Vesicle coat complex A 98.7 0.00082 1.8E-08 72.9 42.7 494 289-915 81-602 (938)
83 PF12755 Vac14_Fab1_bd: Vacuol 98.7 1.8E-07 3.8E-12 77.3 10.6 94 709-809 2-95 (97)
84 KOG1078 Vesicle coat complex C 98.7 0.00026 5.7E-09 77.8 36.5 490 122-764 38-533 (865)
85 KOG1061 Vesicle coat complex A 98.7 7.9E-06 1.7E-10 89.7 25.2 423 22-480 51-526 (734)
86 KOG2021 Nuclear mRNA export fa 98.7 0.0014 3E-08 71.9 52.6 455 335-856 205-770 (980)
87 KOG1061 Vesicle coat complex A 98.6 2.4E-05 5.2E-10 86.1 27.4 200 186-420 15-214 (734)
88 COG5096 Vesicle coat complex, 98.6 0.0026 5.7E-08 72.0 45.5 189 186-414 20-210 (757)
89 KOG1240 Protein kinase contain 98.6 5.2E-06 1.1E-10 94.6 22.0 276 110-399 429-729 (1431)
90 PF13513 HEAT_EZ: HEAT-like re 98.5 1.7E-07 3.7E-12 69.3 5.4 55 296-350 1-55 (55)
91 KOG1967 DNA repair/transcripti 98.5 0.0042 9.2E-08 70.0 61.5 215 589-831 788-1006(1030)
92 PF05804 KAP: Kinesin-associat 98.5 0.0052 1.1E-07 70.3 43.3 370 299-766 266-652 (708)
93 KOG1020 Sister chromatid cohes 98.5 0.0078 1.7E-07 71.6 62.1 136 289-435 823-958 (1692)
94 KOG4524 Uncharacterized conser 98.5 0.0058 1.3E-07 69.5 46.7 157 702-858 812-981 (1014)
95 PF08506 Cse1: Cse1; InterPro 98.5 0.00023 5E-09 75.5 29.3 247 174-432 72-370 (370)
96 cd00020 ARM Armadillo/beta-cat 98.4 1E-06 2.2E-11 78.6 9.4 106 289-395 14-120 (120)
97 COG5240 SEC21 Vesicle coat com 98.4 0.00091 2E-08 70.8 31.7 290 181-525 261-553 (898)
98 PF05804 KAP: Kinesin-associat 98.4 0.0041 8.9E-08 71.1 39.8 290 159-481 265-563 (708)
99 KOG2259 Uncharacterized conser 98.4 0.0022 4.8E-08 69.3 34.6 274 145-441 200-515 (823)
100 KOG1058 Vesicle coat complex C 98.4 0.0011 2.3E-08 72.7 32.5 96 325-432 101-196 (948)
101 PF04510 DUF577: Family of unk 98.4 3E-05 6.5E-10 69.4 17.1 154 103-261 3-165 (174)
102 KOG0168 Putative ubiquitin fus 98.4 0.00085 1.8E-08 74.5 30.7 193 144-357 168-369 (1051)
103 KOG4535 HEAT and armadillo rep 98.4 0.0046 1E-07 64.3 34.0 149 292-440 6-182 (728)
104 KOG0168 Putative ubiquitin fus 98.4 0.00057 1.2E-08 75.7 28.9 203 321-530 209-416 (1051)
105 KOG1967 DNA repair/transcripti 98.3 0.013 2.8E-07 66.3 54.5 148 731-892 864-1017(1030)
106 KOG2956 CLIP-associating prote 98.3 0.00011 2.4E-09 76.0 20.8 212 183-417 286-499 (516)
107 KOG2956 CLIP-associating prote 98.3 0.00011 2.4E-09 75.9 20.7 193 247-457 303-498 (516)
108 PF13513 HEAT_EZ: HEAT-like re 98.3 1.1E-06 2.5E-11 64.9 4.6 55 707-761 1-55 (55)
109 KOG1077 Vesicle coat complex A 98.3 0.013 2.9E-07 63.9 40.0 373 54-456 57-452 (938)
110 PF08506 Cse1: Cse1; InterPro 98.2 0.00032 6.9E-09 74.4 23.9 215 158-390 111-370 (370)
111 KOG4524 Uncharacterized conser 98.2 0.021 4.6E-07 65.1 44.4 350 342-772 567-933 (1014)
112 KOG2062 26S proteasome regulat 98.2 0.0016 3.5E-08 71.2 27.9 156 285-462 522-678 (929)
113 KOG2032 Uncharacterized conser 98.2 0.014 2.9E-07 61.5 39.0 153 293-446 228-380 (533)
114 cd00020 ARM Armadillo/beta-cat 98.2 5.7E-06 1.2E-10 73.6 7.5 110 324-436 8-119 (120)
115 KOG2259 Uncharacterized conser 98.1 0.0071 1.5E-07 65.6 31.0 261 183-485 197-514 (823)
116 TIGR02270 conserved hypothetic 98.1 0.0017 3.6E-08 69.9 25.6 251 44-394 45-295 (410)
117 PF08389 Xpo1: Exportin 1-like 98.1 4.8E-05 1E-09 70.6 12.2 96 118-216 2-117 (148)
118 PF03378 CAS_CSE1: CAS/CSE pro 98.1 0.0026 5.6E-08 69.2 26.8 236 360-644 21-270 (435)
119 PF12717 Cnd1: non-SMC mitotic 98.1 8.6E-05 1.9E-09 70.7 13.6 131 706-851 1-140 (178)
120 KOG4653 Uncharacterized conser 98.0 0.00062 1.3E-08 75.7 21.2 234 367-648 729-966 (982)
121 PF12717 Cnd1: non-SMC mitotic 98.0 0.00015 3.3E-09 69.0 14.6 110 295-413 1-110 (178)
122 PF08167 RIX1: rRNA processing 98.0 0.00019 4.1E-09 67.0 14.6 138 319-458 21-164 (165)
123 COG5656 SXM1 Importin, protein 98.0 0.049 1.1E-06 60.2 54.4 670 102-876 3-780 (970)
124 KOG1058 Vesicle coat complex C 98.0 0.052 1.1E-06 60.1 34.4 374 24-440 24-466 (948)
125 PF14500 MMS19_N: Dos2-interac 98.0 0.0021 4.7E-08 64.7 22.1 243 147-415 3-257 (262)
126 KOG2032 Uncharacterized conser 97.9 0.037 8E-07 58.4 31.0 127 404-536 254-380 (533)
127 KOG0414 Chromosome condensatio 97.9 0.084 1.8E-06 61.8 60.7 146 731-900 916-1065(1251)
128 COG5096 Vesicle coat complex, 97.9 0.025 5.4E-07 64.4 32.0 136 22-173 57-196 (757)
129 PF13646 HEAT_2: HEAT repeats; 97.9 2.8E-05 6E-10 64.5 6.9 79 292-391 10-88 (88)
130 PF05004 IFRD: Interferon-rela 97.9 0.0099 2.1E-07 61.8 27.0 213 630-876 56-283 (309)
131 KOG1820 Microtubule-associated 97.9 0.00053 1.1E-08 79.0 18.7 205 229-451 251-458 (815)
132 KOG1822 Uncharacterized conser 97.9 0.14 3.1E-06 62.9 45.5 297 159-483 800-1128(2067)
133 KOG4653 Uncharacterized conser 97.9 0.0017 3.7E-08 72.4 21.5 235 145-398 729-967 (982)
134 PF04826 Arm_2: Armadillo-like 97.9 0.0011 2.3E-08 66.3 17.7 146 106-262 15-165 (254)
135 PF05004 IFRD: Interferon-rela 97.8 0.009 1.9E-07 62.1 25.0 208 243-460 55-284 (309)
136 PF13251 DUF4042: Domain of un 97.8 0.00026 5.7E-09 66.0 11.6 143 297-439 1-176 (182)
137 KOG1293 Proteins containing ar 97.8 0.024 5.1E-07 62.0 27.0 146 294-441 389-537 (678)
138 TIGR02270 conserved hypothetic 97.8 0.0067 1.5E-07 65.4 23.3 241 142-480 53-294 (410)
139 PLN03076 ARF guanine nucleotid 97.7 0.022 4.7E-07 72.0 30.3 305 66-376 1148-1513(1780)
140 PF13646 HEAT_2: HEAT repeats; 97.7 0.00017 3.8E-09 59.7 8.2 86 325-433 1-88 (88)
141 KOG4413 26S proteasome regulat 97.7 0.068 1.5E-06 53.1 27.2 89 124-212 63-156 (524)
142 KOG1078 Vesicle coat complex C 97.7 0.15 3.3E-06 57.0 33.4 347 95-485 56-424 (865)
143 PF10274 ParcG: Parkin co-regu 97.7 0.00072 1.6E-08 62.4 12.4 126 363-489 36-171 (183)
144 KOG2933 Uncharacterized conser 97.7 0.00072 1.6E-08 66.5 12.6 142 290-440 96-237 (334)
145 COG1413 FOG: HEAT repeat [Ener 97.7 0.045 9.8E-07 58.7 28.2 154 20-212 43-208 (335)
146 COG1413 FOG: HEAT repeat [Ener 97.7 0.0095 2.1E-07 64.0 22.8 251 104-436 44-303 (335)
147 cd00256 VATPase_H VATPase_H, r 97.6 0.041 8.9E-07 59.1 26.5 353 51-436 50-424 (429)
148 PF14500 MMS19_N: Dos2-interac 97.6 0.019 4.1E-07 57.9 22.9 242 235-501 3-256 (262)
149 KOG0891 DNA-dependent protein 97.6 0.53 1.1E-05 61.2 50.9 113 100-216 90-206 (2341)
150 COG5098 Chromosome condensatio 97.5 0.22 4.7E-06 54.8 42.0 105 106-212 302-414 (1128)
151 KOG1517 Guanine nucleotide bin 97.5 0.0065 1.4E-07 69.3 19.4 223 200-441 486-736 (1387)
152 KOG2933 Uncharacterized conser 97.5 0.005 1.1E-07 60.8 15.7 142 239-398 96-237 (334)
153 PF05918 API5: Apoptosis inhib 97.5 0.02 4.3E-07 63.1 22.0 299 116-441 34-349 (556)
154 KOG4413 26S proteasome regulat 97.5 0.079 1.7E-06 52.7 23.4 273 156-441 53-337 (524)
155 PF02985 HEAT: HEAT repeat; I 97.4 0.00018 3.8E-09 45.4 3.5 30 324-353 1-30 (31)
156 PF13001 Ecm29: Proteasome sta 97.4 0.13 2.8E-06 58.0 28.5 141 295-442 296-448 (501)
157 PF04826 Arm_2: Armadillo-like 97.4 0.0069 1.5E-07 60.6 16.3 182 293-486 24-209 (254)
158 PF08167 RIX1: rRNA processing 97.4 0.0073 1.6E-07 56.4 15.0 137 140-279 22-162 (165)
159 PLN03076 ARF guanine nucleotid 97.4 0.27 5.8E-06 62.6 32.5 348 95-457 1081-1510(1780)
160 PF02985 HEAT: HEAT repeat; I 97.4 0.0003 6.4E-09 44.3 3.8 30 735-764 1-30 (31)
161 KOG2062 26S proteasome regulat 97.4 0.39 8.5E-06 53.5 43.4 112 628-787 566-677 (929)
162 PF10274 ParcG: Parkin co-regu 97.3 0.0028 6E-08 58.6 11.3 122 669-812 36-166 (183)
163 COG5116 RPN2 26S proteasome re 97.3 0.0022 4.8E-08 67.8 11.6 155 285-461 519-674 (926)
164 PF12231 Rif1_N: Rap1-interact 97.2 0.51 1.1E-05 51.0 33.2 188 294-487 5-209 (372)
165 KOG2160 Armadillo/beta-catenin 97.1 0.028 6.1E-07 57.3 17.2 148 293-442 94-245 (342)
166 PF11865 DUF3385: Domain of un 97.1 0.0069 1.5E-07 56.0 11.8 146 270-438 8-158 (160)
167 PF12719 Cnd3: Nuclear condens 97.1 0.15 3.4E-06 53.2 23.4 169 597-814 5-185 (298)
168 KOG0567 HEAT repeat-containing 97.1 0.051 1.1E-06 52.7 17.2 264 57-394 6-279 (289)
169 KOG0413 Uncharacterized conser 97.0 0.98 2.1E-05 51.9 35.5 145 297-457 946-1091(1529)
170 KOG0889 Histone acetyltransfer 97.0 2.4 5.2E-05 56.3 43.4 166 288-454 990-1172(3550)
171 PF05918 API5: Apoptosis inhib 97.0 0.83 1.8E-05 50.8 28.1 278 66-375 33-320 (556)
172 PF08767 CRM1_C: CRM1 C termin 97.0 0.12 2.6E-06 54.3 21.0 183 199-394 42-243 (319)
173 PF11864 DUF3384: Domain of un 96.8 1.2 2.6E-05 49.9 34.6 284 121-436 7-329 (464)
174 PF08064 UME: UME (NUC010) dom 96.7 0.02 4.2E-07 48.8 10.6 97 402-504 5-105 (107)
175 KOG2759 Vacuolar H+-ATPase V1 96.7 0.95 2.1E-05 47.4 26.3 354 54-437 65-438 (442)
176 KOG0946 ER-Golgi vesicle-tethe 96.7 1.5 3.2E-05 49.6 35.3 149 54-212 22-194 (970)
177 PF12719 Cnd3: Nuclear condens 96.7 0.12 2.6E-06 54.1 18.4 151 320-483 23-182 (298)
178 smart00802 UME Domain in UVSB 96.7 0.022 4.7E-07 48.1 10.2 97 401-503 4-104 (107)
179 PF01603 B56: Protein phosphat 96.7 0.38 8.1E-06 52.6 22.6 243 17-273 130-383 (409)
180 KOG1949 Uncharacterized conser 96.7 0.9 1.9E-05 50.4 24.4 152 185-352 175-331 (1005)
181 KOG1525 Sister chromatid cohes 96.6 2.9 6.2E-05 51.5 36.5 368 323-785 48-434 (1266)
182 KOG2025 Chromosome condensatio 96.6 1.6 3.5E-05 48.7 35.0 108 319-433 81-189 (892)
183 KOG2025 Chromosome condensatio 96.6 0.37 8E-06 53.5 21.2 204 144-392 86-291 (892)
184 KOG0567 HEAT repeat-containing 96.6 0.43 9.4E-06 46.5 19.3 114 296-441 170-284 (289)
185 KOG2160 Armadillo/beta-catenin 96.6 0.16 3.6E-06 51.9 17.3 144 588-766 96-243 (342)
186 PF11864 DUF3384: Domain of un 96.5 1.9 4.2E-05 48.2 35.1 262 66-357 40-336 (464)
187 KOG2149 Uncharacterized conser 96.5 0.075 1.6E-06 55.1 14.7 133 325-459 60-192 (393)
188 KOG0392 SNF2 family DNA-depend 96.5 3.1 6.7E-05 49.8 46.3 257 139-416 71-348 (1549)
189 PF05536 Neurochondrin: Neuroc 96.4 2.4 5.2E-05 48.2 36.2 181 157-358 71-267 (543)
190 PF10521 DUF2454: Protein of u 96.4 0.062 1.3E-06 55.4 13.8 167 293-460 86-276 (282)
191 COG5101 CRM1 Importin beta-rel 96.4 2.1 4.5E-05 47.0 54.4 144 295-441 496-652 (1053)
192 KOG0946 ER-Golgi vesicle-tethe 96.3 2.7 5.9E-05 47.6 40.8 199 197-440 36-244 (970)
193 PF03224 V-ATPase_H_N: V-ATPas 96.3 0.17 3.7E-06 53.3 16.8 203 51-264 52-273 (312)
194 PF11865 DUF3385: Domain of un 96.3 0.067 1.5E-06 49.5 11.8 148 611-763 3-157 (160)
195 PF13251 DUF4042: Domain of un 96.3 0.066 1.4E-06 50.2 11.7 150 247-397 2-176 (182)
196 KOG1517 Guanine nucleotide bin 96.2 0.34 7.3E-06 56.1 18.7 158 286-443 516-677 (1387)
197 KOG1837 Uncharacterized conser 96.2 5.1 0.00011 49.4 29.2 69 704-772 1552-1620(1621)
198 PF01603 B56: Protein phosphat 96.1 0.35 7.6E-06 52.8 18.2 231 142-396 132-371 (409)
199 PF04118 Dopey_N: Dopey, N-ter 96.1 1.5 3.2E-05 45.4 21.4 238 119-394 4-253 (307)
200 COG5098 Chromosome condensatio 96.1 3.2 6.9E-05 46.2 62.7 107 287-396 304-416 (1128)
201 PF05536 Neurochondrin: Neuroc 96.1 3.6 7.9E-05 46.7 40.9 238 233-486 7-265 (543)
202 KOG2549 Transcription initiati 96.1 0.32 6.9E-06 52.5 16.8 160 178-352 205-370 (576)
203 PF08064 UME: UME (NUC010) dom 96.0 0.071 1.5E-06 45.4 9.8 98 317-418 5-106 (107)
204 smart00802 UME Domain in UVSB 96.0 0.059 1.3E-06 45.5 9.0 98 316-417 4-105 (107)
205 COG5095 TAF6 Transcription ini 95.9 0.24 5.1E-06 48.7 13.9 158 177-353 194-360 (450)
206 PF12530 DUF3730: Protein of u 95.9 2.1 4.6E-05 42.7 22.4 212 186-422 2-217 (234)
207 KOG1822 Uncharacterized conser 95.9 7.4 0.00016 49.0 60.6 147 56-212 53-205 (2067)
208 KOG1410 Nuclear transport rece 95.8 4.2 9.1E-05 45.2 59.9 260 20-294 5-319 (1082)
209 PF10521 DUF2454: Protein of u 95.8 0.38 8.1E-06 49.7 15.8 143 360-504 114-274 (282)
210 PF12726 SEN1_N: SEN1 N termin 95.7 6.5 0.00014 47.0 33.8 121 322-443 119-249 (727)
211 KOG1243 Protein kinase [Genera 95.7 0.22 4.7E-06 55.5 14.4 232 97-354 267-517 (690)
212 PF08569 Mo25: Mo25-like; Int 95.7 2.3 4.9E-05 44.7 21.2 191 143-353 76-284 (335)
213 KOG1293 Proteins containing ar 95.6 4.9 0.00011 44.8 33.2 125 630-788 390-517 (678)
214 PF12054 DUF3535: Domain of un 95.6 1.2 2.6E-05 49.1 19.8 241 295-551 100-366 (441)
215 KOG2122 Beta-catenin-binding p 95.5 1.5 3.2E-05 53.1 20.5 71 363-436 528-600 (2195)
216 cd00256 VATPase_H VATPase_H, r 95.5 4.9 0.00011 43.7 29.0 292 66-394 112-424 (429)
217 KOG1243 Protein kinase [Genera 95.4 0.43 9.3E-06 53.3 15.3 183 236-439 335-517 (690)
218 smart00638 LPD_N Lipoprotein N 95.3 2.1 4.6E-05 49.8 22.1 227 118-389 340-572 (574)
219 PF01347 Vitellogenin_N: Lipop 95.0 2.4 5.1E-05 50.0 21.5 227 118-390 378-617 (618)
220 PF14664 RICTOR_N: Rapamycin-i 95.0 3.7 8.1E-05 44.0 20.6 231 139-395 21-269 (371)
221 cd08050 TAF6 TATA Binding Prot 94.9 0.38 8.2E-06 51.1 12.7 160 177-351 175-339 (343)
222 COG5116 RPN2 26S proteasome re 94.8 1.8 3.9E-05 46.8 17.2 154 188-376 520-673 (926)
223 PF08623 TIP120: TATA-binding 94.8 0.9 1.9E-05 41.9 13.2 96 361-460 5-117 (169)
224 PF12231 Rif1_N: Rap1-interact 94.8 7.3 0.00016 42.1 33.2 313 154-481 4-351 (372)
225 KOG2081 Nuclear transport regu 94.6 8.5 0.00019 42.2 33.3 338 362-783 150-515 (559)
226 PF03224 V-ATPase_H_N: V-ATPas 94.6 4 8.7E-05 43.0 19.8 204 182-400 57-274 (312)
227 KOG1222 Kinesin associated pro 94.5 7.9 0.00017 41.3 25.7 121 297-422 278-400 (791)
228 KOG2549 Transcription initiati 94.4 4.4 9.5E-05 44.2 19.0 174 234-419 210-394 (576)
229 KOG1048 Neural adherens juncti 94.4 8.2 0.00018 44.2 22.0 98 296-396 533-642 (717)
230 PF10363 DUF2435: Protein of u 94.3 0.51 1.1E-05 38.7 9.5 84 366-459 4-87 (92)
231 PF08767 CRM1_C: CRM1 C termin 94.3 8.2 0.00018 40.7 25.0 169 705-898 132-315 (319)
232 PF13001 Ecm29: Proteasome sta 94.2 12 0.00027 42.3 24.5 138 336-485 296-446 (501)
233 KOG2137 Protein kinase [Signal 94.1 3.4 7.4E-05 46.7 18.1 174 297-485 288-461 (700)
234 cd08050 TAF6 TATA Binding Prot 94.1 0.62 1.3E-05 49.4 12.4 99 295-394 230-339 (343)
235 cd03561 VHS VHS domain family; 94.0 0.81 1.7E-05 41.0 11.2 79 321-399 35-116 (133)
236 KOG2149 Uncharacterized conser 94.0 2 4.4E-05 44.9 15.2 131 143-278 58-188 (393)
237 PF12530 DUF3730: Protein of u 94.0 3.6 7.8E-05 41.1 16.8 196 30-248 11-220 (234)
238 KOG2137 Protein kinase [Signal 93.7 5.3 0.00011 45.2 18.6 133 319-458 385-517 (700)
239 COG5657 CSE1 CAS/CSE protein i 93.5 19 0.00041 42.1 38.7 60 817-880 530-589 (947)
240 PF04118 Dopey_N: Dopey, N-ter 93.5 4.3 9.2E-05 42.0 16.5 148 293-442 22-172 (307)
241 PF14868 DUF4487: Domain of un 93.2 18 0.00039 41.0 26.5 292 121-439 245-554 (559)
242 cd03568 VHS_STAM VHS domain fa 93.2 1.5 3.2E-05 39.7 11.4 102 290-399 12-114 (144)
243 PF12054 DUF3535: Domain of un 93.0 7.3 0.00016 43.0 18.5 55 158-216 102-157 (441)
244 PF10363 DUF2435: Protein of u 92.9 0.56 1.2E-05 38.5 7.5 63 704-767 14-76 (92)
245 COG5095 TAF6 Transcription ini 92.9 3.1 6.6E-05 41.3 13.5 142 242-397 209-361 (450)
246 KOG0803 Predicted E3 ubiquitin 92.8 13 0.00028 46.3 21.6 240 144-391 42-300 (1312)
247 KOG0803 Predicted E3 ubiquitin 92.8 17 0.00036 45.3 22.4 261 182-459 39-330 (1312)
248 PF08623 TIP120: TATA-binding 92.7 0.51 1.1E-05 43.5 7.6 137 769-911 3-164 (169)
249 PF14664 RICTOR_N: Rapamycin-i 92.5 18 0.00039 38.9 21.0 213 672-900 26-270 (371)
250 cd03567 VHS_GGA VHS domain fam 92.3 2.9 6.3E-05 37.5 11.8 101 290-398 13-119 (139)
251 KOG0413 Uncharacterized conser 92.2 29 0.00062 40.8 50.3 136 706-857 944-1080(1529)
252 cd03569 VHS_Hrs_Vps27p VHS dom 92.2 2.6 5.6E-05 38.1 11.5 90 321-413 39-129 (142)
253 KOG1949 Uncharacterized conser 92.0 25 0.00055 39.7 22.8 146 288-436 180-330 (1005)
254 PF00790 VHS: VHS domain; Int 92.0 4.1 8.9E-05 36.9 12.7 94 405-498 39-134 (140)
255 PF00514 Arm: Armadillo/beta-c 91.9 0.29 6.3E-06 33.1 3.9 29 734-762 12-40 (41)
256 smart00638 LPD_N Lipoprotein N 91.8 26 0.00057 40.7 22.6 122 294-434 409-542 (574)
257 smart00288 VHS Domain present 91.6 3.4 7.4E-05 36.9 11.5 78 322-399 36-115 (133)
258 KOG1848 Uncharacterized conser 91.3 35 0.00076 42.0 21.9 228 117-352 855-1132(1610)
259 PF11698 V-ATPase_H_C: V-ATPas 91.2 0.84 1.8E-05 39.1 6.8 69 143-212 43-114 (119)
260 KOG2213 Apoptosis inhibitor 5/ 90.0 27 0.00059 36.6 24.2 247 589-878 38-295 (460)
261 PF08161 NUC173: NUC173 domain 90.0 9.1 0.0002 36.9 13.5 120 413-546 5-124 (198)
262 KOG1048 Neural adherens juncti 89.9 43 0.00093 38.7 26.5 108 285-394 569-683 (717)
263 KOG3961 Uncharacterized conser 89.9 1 2.3E-05 42.2 6.6 77 707-783 128-207 (262)
264 KOG1566 Conserved protein Mo25 89.5 26 0.00057 35.6 18.2 194 143-354 79-288 (342)
265 PF00514 Arm: Armadillo/beta-c 89.3 0.67 1.5E-05 31.3 3.9 28 324-351 13-40 (41)
266 PF12074 DUF3554: Domain of un 89.1 35 0.00076 36.5 21.3 206 143-355 22-238 (339)
267 KOG3961 Uncharacterized conser 89.1 1.8 4E-05 40.6 7.6 93 363-457 112-207 (262)
268 PF01347 Vitellogenin_N: Lipop 89.0 8.4 0.00018 45.4 15.5 141 55-211 432-587 (618)
269 PF08569 Mo25: Mo25-like; Int 88.9 34 0.00073 36.1 27.7 211 108-335 81-313 (335)
270 PF14225 MOR2-PAG1_C: Cell mor 88.7 30 0.00064 35.1 20.8 188 224-440 61-257 (262)
271 COG5369 Uncharacterized conser 88.5 17 0.00037 39.6 15.1 137 299-437 406-545 (743)
272 COG5218 YCG1 Chromosome conden 88.4 45 0.00098 37.0 47.8 245 149-434 17-263 (885)
273 PF00790 VHS: VHS domain; Int 88.2 5.6 0.00012 36.0 10.3 79 321-399 40-122 (140)
274 cd03568 VHS_STAM VHS domain fa 88.1 7.9 0.00017 35.1 11.0 95 117-218 17-114 (144)
275 KOG0889 Histone acetyltransfer 87.7 1.3E+02 0.0029 41.5 56.9 278 617-910 985-1320(3550)
276 KOG0929 Guanine nucleotide exc 87.7 31 0.00066 43.4 18.5 252 116-376 1049-1322(1514)
277 PF08389 Xpo1: Exportin 1-like 87.4 2 4.4E-05 39.3 7.2 128 337-477 2-148 (148)
278 PF12765 Cohesin_HEAT: HEAT re 86.9 0.88 1.9E-05 30.9 3.2 41 305-347 2-42 (42)
279 KOG4199 Uncharacterized conser 86.9 40 0.00087 34.7 28.8 314 139-481 104-443 (461)
280 cd03569 VHS_Hrs_Vps27p VHS dom 86.4 11 0.00023 34.2 10.9 96 116-218 20-118 (142)
281 cd03565 VHS_Tom1 VHS domain fa 86.2 12 0.00026 33.8 11.0 103 290-400 13-120 (141)
282 KOG1851 Uncharacterized conser 86.0 1.1E+02 0.0023 38.7 34.7 183 337-533 1501-1684(1710)
283 PF04388 Hamartin: Hamartin pr 85.9 21 0.00044 41.9 15.6 91 691-785 70-162 (668)
284 cd03561 VHS VHS domain family; 85.7 5.2 0.00011 35.8 8.6 77 364-441 36-116 (133)
285 cd00197 VHS_ENTH_ANTH VHS, ENT 85.4 13 0.00028 32.3 10.7 74 320-393 34-113 (115)
286 KOG1877 Putative transmembrane 85.4 85 0.0018 37.0 24.2 60 155-215 68-127 (819)
287 PF12333 Ipi1_N: Rix1 complex 85.3 7.3 0.00016 32.9 8.7 62 315-376 3-64 (102)
288 PF12333 Ipi1_N: Rix1 complex 85.3 8 0.00017 32.6 8.9 62 726-787 3-65 (102)
289 PF11919 DUF3437: Domain of un 85.3 1.5 3.3E-05 35.6 4.4 58 297-355 4-61 (90)
290 KOG4500 Rho/Rac GTPase guanine 85.3 56 0.0012 34.9 25.8 105 289-396 322-432 (604)
291 KOG1837 Uncharacterized conser 85.3 1.2E+02 0.0025 38.4 35.7 104 422-537 1518-1621(1621)
292 smart00288 VHS Domain present 85.2 27 0.00059 31.2 13.0 79 405-485 34-114 (133)
293 PF04388 Hamartin: Hamartin pr 84.9 15 0.00033 43.0 14.0 153 20-193 4-161 (668)
294 PF11698 V-ATPase_H_C: V-ATPas 84.8 3.9 8.6E-05 35.1 6.8 71 324-395 44-115 (119)
295 KOG1848 Uncharacterized conser 84.4 55 0.0012 40.4 17.8 179 293-491 853-1034(1610)
296 PF07571 DUF1546: Protein of u 84.0 3.2 7E-05 34.2 5.8 60 293-352 17-78 (92)
297 PF14631 FancD2: Fanconi anaem 83.6 1.3E+02 0.0028 39.0 21.9 149 174-343 425-574 (1426)
298 PF14631 FancD2: Fanconi anaem 83.4 1.5E+02 0.0033 38.3 26.6 143 311-460 423-565 (1426)
299 COG5218 YCG1 Chromosome conden 83.3 82 0.0018 35.1 42.1 197 117-349 60-263 (885)
300 PF11701 UNC45-central: Myosin 82.5 9.8 0.00021 35.2 9.1 133 629-807 17-156 (157)
301 KOG2973 Uncharacterized conser 82.3 5.7 0.00012 40.0 7.7 105 326-436 6-110 (353)
302 cd03572 ENTH_epsin_related ENT 82.2 29 0.00063 30.2 11.1 76 406-481 36-118 (122)
303 cd03567 VHS_GGA VHS domain fam 82.2 9.7 0.00021 34.2 8.6 100 331-440 13-119 (139)
304 cd03572 ENTH_epsin_related ENT 82.1 18 0.00039 31.5 9.8 95 714-809 19-118 (122)
305 PF08713 DNA_alkylation: DNA a 81.8 24 0.00053 34.6 12.5 60 289-354 127-186 (213)
306 KOG2199 Signal transducing ada 81.2 12 0.00025 39.0 9.6 103 290-400 20-123 (462)
307 KOG1222 Kinesin associated pro 81.1 87 0.0019 33.9 29.7 122 244-376 276-397 (791)
308 KOG2085 Serine/threonine prote 80.9 35 0.00076 36.1 12.9 102 165-271 321-425 (457)
309 KOG2973 Uncharacterized conser 80.8 13 0.00029 37.5 9.6 102 289-395 10-111 (353)
310 PF12074 DUF3554: Domain of un 79.4 93 0.002 33.2 20.0 181 707-903 37-239 (339)
311 KOG1877 Putative transmembrane 78.6 1.4E+02 0.003 35.3 18.0 54 593-647 74-127 (819)
312 PF14668 RICTOR_V: Rapamycin-i 78.1 5.8 0.00013 30.8 5.0 54 298-353 3-59 (73)
313 PF10350 DUF2428: Putative dea 78.0 83 0.0018 31.9 17.5 169 592-787 64-252 (255)
314 PF10441 Urb2: Urb2/Npa2 famil 77.8 71 0.0015 31.6 14.1 167 755-926 9-213 (223)
315 PF04078 Rcd1: Cell differenti 77.2 8.4 0.00018 38.2 7.1 99 707-811 110-219 (262)
316 KOG3036 Protein involved in ce 77.2 72 0.0016 31.4 12.9 100 705-810 137-247 (293)
317 PF04510 DUF577: Family of unk 77.2 12 0.00027 34.4 7.5 37 426-462 60-97 (174)
318 PF14225 MOR2-PAG1_C: Cell mor 77.1 89 0.0019 31.8 15.2 136 106-259 114-253 (262)
319 PF07571 DUF1546: Protein of u 76.8 9.4 0.0002 31.4 6.3 59 704-762 17-77 (92)
320 PF09324 DUF1981: Domain of un 76.2 13 0.00028 30.2 6.8 70 100-169 14-85 (86)
321 PF08161 NUC173: NUC173 domain 75.3 81 0.0018 30.4 14.2 57 159-216 16-72 (198)
322 PF07539 DRIM: Down-regulated 74.6 45 0.00098 30.1 10.5 81 322-417 16-97 (141)
323 KOG3678 SARM protein (with ste 74.3 43 0.00092 35.9 11.5 150 619-810 183-336 (832)
324 PF08713 DNA_alkylation: DNA a 74.0 92 0.002 30.5 14.8 151 33-212 32-183 (213)
325 PF11701 UNC45-central: Myosin 73.3 49 0.0011 30.6 10.9 100 290-391 51-155 (157)
326 PF05327 RRN3: RNA polymerase 73.1 99 0.0021 35.7 15.6 133 713-856 56-198 (563)
327 PF12830 Nipped-B_C: Sister ch 72.9 90 0.002 29.9 17.0 72 106-180 11-82 (187)
328 smart00185 ARM Armadillo/beta- 72.9 4.9 0.00011 26.7 3.2 28 735-762 13-40 (41)
329 PF12765 Cohesin_HEAT: HEAT re 72.1 6.5 0.00014 26.7 3.5 26 183-208 17-42 (42)
330 PF09324 DUF1981: Domain of un 71.8 29 0.00063 28.1 7.9 67 143-209 17-84 (86)
331 COG5231 VMA13 Vacuolar H+-ATPa 71.7 1.3E+02 0.0027 31.0 16.9 51 302-352 377-428 (432)
332 KOG2122 Beta-catenin-binding p 71.1 3E+02 0.0064 35.0 24.4 74 323-397 530-603 (2195)
333 smart00185 ARM Armadillo/beta- 70.8 5.7 0.00012 26.4 3.1 28 324-351 13-40 (41)
334 KOG4646 Uncharacterized conser 70.0 78 0.0017 28.0 10.5 103 106-212 19-127 (173)
335 PF12783 Sec7_N: Guanine nucle 69.9 97 0.0021 29.0 14.3 99 157-261 36-147 (168)
336 KOG2085 Serine/threonine prote 69.8 47 0.001 35.2 10.5 91 305-396 322-415 (457)
337 KOG2011 Sister chromatid cohes 69.6 1.5E+02 0.0033 36.1 15.9 58 153-212 297-354 (1048)
338 KOG4199 Uncharacterized conser 69.4 1.5E+02 0.0032 30.8 30.4 300 116-436 119-443 (461)
339 PF14222 MOR2-PAG1_N: Cell mor 68.7 2.2E+02 0.0048 32.7 20.7 107 104-212 130-248 (552)
340 PF11919 DUF3437: Domain of un 68.0 20 0.00043 29.3 6.1 60 749-815 4-63 (90)
341 KOG2759 Vacuolar H+-ATPase V1 67.8 1.8E+02 0.0039 31.3 30.3 271 95-395 148-438 (442)
342 KOG1789 Endocytosis protein RM 67.8 2.9E+02 0.0063 33.6 27.4 137 71-212 1741-1882(2235)
343 PF03130 HEAT_PBS: PBS lyase H 66.8 4.5 9.8E-05 24.3 1.7 14 339-352 1-14 (27)
344 PF08146 BP28CT: BP28CT (NUC21 66.7 1.1E+02 0.0023 28.2 11.8 100 381-480 36-145 (153)
345 COG5537 IRR1 Cohesin [Cell div 66.7 2.3E+02 0.0049 32.0 15.7 99 154-258 286-384 (740)
346 KOG2038 CAATT-binding transcri 66.5 2.6E+02 0.0056 32.6 23.0 34 181-215 301-334 (988)
347 KOG3613 Dopey and related pred 65.8 3.9E+02 0.0084 34.7 18.6 81 293-373 1498-1580(1749)
348 PF08146 BP28CT: BP28CT (NUC21 65.6 47 0.001 30.5 8.8 84 467-550 35-119 (153)
349 cd03565 VHS_Tom1 VHS domain fa 65.4 1.1E+02 0.0023 27.8 12.7 95 117-218 18-119 (141)
350 PF11841 DUF3361: Domain of un 64.9 1.2E+02 0.0025 28.0 11.1 101 667-767 32-135 (160)
351 PF07539 DRIM: Down-regulated 64.1 44 0.00095 30.2 8.2 31 182-212 15-45 (141)
352 cd06561 AlkD_like A new struct 63.8 24 0.00051 34.2 7.2 63 287-354 110-172 (197)
353 PF12783 Sec7_N: Guanine nucle 63.6 93 0.002 29.1 10.9 99 295-395 35-146 (168)
354 smart00567 EZ_HEAT E-Z type HE 63.5 9.8 0.00021 23.4 2.9 15 296-310 1-15 (30)
355 COG5234 CIN1 Beta-tubulin fold 63.3 66 0.0014 36.6 10.6 121 632-766 359-494 (993)
356 PF12397 U3snoRNP10: U3 small 63.1 1E+02 0.0023 26.8 12.5 74 319-397 2-76 (121)
357 PF14668 RICTOR_V: Rapamycin-i 62.9 20 0.00043 27.9 5.0 53 709-764 3-59 (73)
358 KOG1525 Sister chromatid cohes 62.2 4.3E+02 0.0093 33.7 54.6 136 289-425 266-441 (1266)
359 PF06685 DUF1186: Protein of u 61.3 1.8E+02 0.004 29.1 13.0 48 777-828 113-161 (249)
360 KOG3036 Protein involved in ce 60.6 1.8E+02 0.0039 28.8 15.1 196 20-231 26-261 (293)
361 PF12830 Nipped-B_C: Sister ch 60.5 1.6E+02 0.0035 28.2 17.2 85 184-278 8-92 (187)
362 KOG1087 Cytosolic sorting prot 60.3 98 0.0021 34.3 11.5 90 322-413 37-128 (470)
363 KOG2199 Signal transducing ada 60.3 65 0.0014 33.9 9.4 69 289-357 52-123 (462)
364 KOG2256 Predicted protein invo 59.7 3.2E+02 0.0069 31.3 18.7 185 362-548 279-477 (661)
365 PF11935 DUF3453: Domain of un 59.4 2E+02 0.0043 28.9 15.9 119 152-271 2-156 (239)
366 cd00197 VHS_ENTH_ANTH VHS, ENT 57.4 1.3E+02 0.0027 26.0 10.4 74 139-212 33-114 (115)
367 PF11935 DUF3453: Domain of un 55.8 2.3E+02 0.0049 28.4 18.0 123 332-459 2-163 (239)
368 PF14868 DUF4487: Domain of un 54.4 3.8E+02 0.0083 30.7 22.6 81 319-400 475-557 (559)
369 PLN03205 ATR interacting prote 54.2 1.6E+02 0.0034 31.2 10.9 136 122-260 302-446 (652)
370 PF14911 MMS22L_C: S-phase gen 53.2 3.2E+02 0.0069 29.4 27.1 116 341-460 229-348 (373)
371 PF12612 TFCD_C: Tubulin foldi 52.8 1.1E+02 0.0025 29.3 9.6 111 320-437 4-116 (193)
372 COG5231 VMA13 Vacuolar H+-ATPa 50.6 34 0.00073 34.9 5.5 70 143-212 356-427 (432)
373 PF04078 Rcd1: Cell differenti 50.0 2.9E+02 0.0062 27.9 18.8 103 157-262 110-220 (262)
374 KOG2213 Apoptosis inhibitor 5/ 48.5 3.7E+02 0.008 28.7 21.1 62 146-212 28-89 (460)
375 KOG3723 PH domain protein Melt 47.8 4.5E+02 0.0097 29.5 19.7 84 302-394 182-265 (851)
376 PF12243 CTK3: CTD kinase subu 47.4 76 0.0016 28.5 6.7 78 328-416 13-92 (139)
377 COG5369 Uncharacterized conser 47.4 4.5E+02 0.0098 29.4 21.3 114 323-437 473-594 (743)
378 KOG2011 Sister chromatid cohes 47.0 6.5E+02 0.014 31.1 24.3 62 702-765 296-357 (1048)
379 PF10350 DUF2428: Putative dea 45.9 3.4E+02 0.0073 27.5 13.9 154 295-451 60-242 (255)
380 cd00872 PI3Ka_I Phosphoinositi 45.2 1.5E+02 0.0032 27.9 8.6 79 19-115 38-117 (171)
381 PF09759 Atx10homo_assoc: Spin 42.9 65 0.0014 27.1 5.3 56 710-766 3-62 (102)
382 cd00864 PI3Ka Phosphoinositide 41.4 1.9E+02 0.004 26.6 8.6 79 19-115 38-117 (152)
383 PF03542 Tuberin: Tuberin; In 41.3 4.8E+02 0.01 28.0 15.9 154 232-393 142-301 (356)
384 PF13925 Katanin_con80: con80 41.1 2E+02 0.0044 26.8 9.0 55 123-178 45-104 (164)
385 PF12397 U3snoRNP10: U3 small 40.4 2.5E+02 0.0054 24.4 13.7 73 731-812 3-76 (121)
386 cd03562 CID CID (CTD-Interacti 40.3 2.4E+02 0.0052 24.2 9.1 82 335-427 17-98 (114)
387 KOG2005 26S proteasome regulat 40.1 6.4E+02 0.014 29.1 18.9 77 56-137 50-129 (878)
388 cd00872 PI3Ka_I Phosphoinositi 38.6 3.4E+02 0.0074 25.5 10.7 79 142-238 38-116 (171)
389 PF12243 CTK3: CTD kinase subu 38.5 3E+02 0.0065 24.8 11.0 80 368-458 11-93 (139)
390 PF14676 FANCI_S2: FANCI solen 38.3 2.7E+02 0.0058 25.8 9.0 80 164-254 76-155 (158)
391 cd00870 PI3Ka_III Phosphoinosi 38.3 2.2E+02 0.0047 26.6 8.5 79 19-115 45-124 (166)
392 PF12726 SEN1_N: SEN1 N termin 36.8 8.3E+02 0.018 29.4 37.5 144 380-534 96-250 (727)
393 smart00145 PI3Ka Phosphoinosit 36.7 2.4E+02 0.0052 26.9 8.8 56 20-79 44-100 (184)
394 PF14676 FANCI_S2: FANCI solen 36.4 3.5E+02 0.0076 25.0 10.1 119 74-209 37-157 (158)
395 smart00582 RPR domain present 36.2 2.1E+02 0.0047 24.8 8.0 60 328-398 5-64 (121)
396 cd03562 CID CID (CTD-Interacti 35.9 2.8E+02 0.0061 23.7 10.2 55 706-760 50-105 (114)
397 PF03810 IBN_N: Importin-beta 35.9 2.1E+02 0.0045 22.2 7.3 57 866-925 14-71 (77)
398 COG5110 RPN1 26S proteasome re 35.2 6.9E+02 0.015 28.1 21.3 75 56-137 49-128 (881)
399 KOG1851 Uncharacterized conser 34.2 1.2E+03 0.025 30.4 38.8 166 732-914 1524-1692(1710)
400 PF04699 P16-Arc: ARP2/3 compl 33.6 2.1E+02 0.0045 26.2 7.4 41 885-925 70-110 (152)
401 PF09759 Atx10homo_assoc: Spin 33.6 1.5E+02 0.0033 24.9 6.0 58 340-398 3-62 (102)
402 KOG2256 Predicted protein invo 33.4 8.1E+02 0.018 28.3 26.1 178 322-502 281-475 (661)
403 PF00613 PI3Ka: Phosphoinositi 32.2 1.6E+02 0.0034 28.1 6.8 57 19-79 44-101 (184)
404 cd06561 AlkD_like A new struct 31.1 4.8E+02 0.01 24.9 13.7 72 368-446 108-179 (197)
405 KOG3687 Tuberin - Rap/ran-GTPa 30.4 1.1E+03 0.023 28.8 39.8 76 468-547 445-522 (1697)
406 KOG4500 Rho/Rac GTPase guanine 30.4 7.4E+02 0.016 27.0 31.8 201 230-438 314-520 (604)
407 PF08158 NUC130_3NT: NUC130/3N 30.2 1.3E+02 0.0027 21.7 4.3 45 168-212 3-47 (52)
408 PF14911 MMS22L_C: S-phase gen 29.3 7.5E+02 0.016 26.7 23.7 43 606-649 59-101 (373)
409 PF01465 GRIP: GRIP domain; I 29.1 1.2E+02 0.0027 21.1 4.0 35 99-134 3-37 (46)
410 smart00582 RPR domain present 28.7 3.9E+02 0.0084 23.1 9.4 76 371-457 6-82 (121)
411 cd03571 ENTH_epsin ENTH domain 28.3 4.1E+02 0.0089 23.3 8.4 57 126-182 20-78 (123)
412 PF04876 Tenui_NCP: Tenuivirus 27.8 1.9E+02 0.0041 25.8 5.7 53 873-925 120-173 (175)
413 KOG3678 SARM protein (with ste 27.8 8.3E+02 0.018 26.7 17.5 144 8-172 170-336 (832)
414 cd00864 PI3Ka Phosphoinositide 27.5 2.2E+02 0.0048 26.1 6.7 79 142-238 38-116 (152)
415 PF11841 DUF3361: Domain of un 27.4 5E+02 0.011 24.0 12.2 76 140-216 51-133 (160)
416 PF06628 Catalase-rel: Catalas 27.0 1.4E+02 0.003 22.9 4.5 41 90-130 14-54 (68)
417 PF14961 BROMI: Broad-minded p 26.6 5.5E+02 0.012 32.1 11.1 131 326-460 164-316 (1296)
418 KOG0929 Guanine nucleotide exc 26.4 1.6E+03 0.034 29.4 19.1 139 405-548 1172-1320(1514)
419 PF03392 OS-D: Insect pheromon 26.4 62 0.0013 26.8 2.6 51 866-917 39-89 (95)
420 cd05136 RasGAP_DAB2IP The DAB2 26.0 7.8E+02 0.017 25.8 15.8 74 707-784 27-103 (309)
421 smart00145 PI3Ka Phosphoinosit 26.0 5.8E+02 0.013 24.3 11.1 80 141-238 42-121 (184)
422 PF00613 PI3Ka: Phosphoinositi 25.7 3.2E+02 0.0069 26.1 7.7 81 140-238 42-122 (184)
423 PF01417 ENTH: ENTH domain; I 25.7 2.2E+02 0.0048 25.0 6.3 70 125-194 21-93 (125)
424 cd00869 PI3Ka_II Phosphoinosit 25.2 3E+02 0.0065 25.8 7.1 18 98-115 100-117 (169)
425 PF14961 BROMI: Broad-minded p 25.0 1.8E+02 0.004 35.9 6.9 72 106-177 164-236 (1296)
426 cd00870 PI3Ka_III Phosphoinosi 24.6 2.5E+02 0.0054 26.2 6.5 79 142-238 45-123 (166)
427 COG5221 DOP1 Dopey and related 22.8 1.3E+03 0.028 28.5 12.8 17 160-176 80-96 (1618)
428 PF10193 Telomere_reg-2: Telom 22.6 3.9E+02 0.0084 23.1 6.9 58 747-806 18-78 (114)
429 COG5234 CIN1 Beta-tubulin fold 22.5 1.3E+03 0.028 27.1 21.2 235 181-436 243-490 (993)
430 COG5209 RCD1 Uncharacterized p 22.3 7.4E+02 0.016 24.2 10.3 74 705-780 158-233 (315)
431 PF05327 RRN3: RNA polymerase 21.5 1.3E+03 0.028 26.7 16.2 51 161-216 143-195 (563)
432 PF08620 RPAP1_C: RPAP1-like, 21.2 1.9E+02 0.0042 22.6 4.2 32 144-175 40-71 (73)
433 COG1698 Uncharacterized protei 20.8 4.6E+02 0.01 21.3 6.3 36 14-49 7-48 (93)
434 PF12612 TFCD_C: Tubulin foldi 20.7 7.5E+02 0.016 23.7 15.3 151 102-261 6-159 (193)
435 COG4912 Predicted DNA alkylati 20.6 4.9E+02 0.011 25.4 7.6 69 139-212 114-182 (222)
436 PF08324 PUL: PUL domain; Int 20.5 9E+02 0.02 24.5 11.4 101 294-394 122-230 (268)
437 cd00869 PI3Ka_II Phosphoinosit 20.4 3.4E+02 0.0074 25.4 6.5 43 185-238 74-116 (169)
438 COG3351 FlaD Putative archaeal 20.0 4.5E+02 0.0098 25.0 6.9 69 825-907 97-165 (214)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-120 Score=995.05 Aligned_cols=890 Identities=46% Similarity=0.760 Sum_probs=832.4
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
|+.+.+.++++.+.||||++|++||+.|+....+.| .+..|.+++.++.++++||+|||++|+.+.++ |+.+
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~------w~~l 72 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH------WSRL 72 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH------hhcC
Confidence 467899999999999999999999999997666434 67899999999999999999999999999998 9999
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400 97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE 176 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 176 (927)
+.+.|++||+.||..+.+|+.+.||+++|++++.||+.++|. +||+++++|+++.+|+++..|+.|+.+|..+.+.++.
T Consensus 73 ~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 73 SAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 999999999999999999999999999999999999999995 9999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC-CchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002400 177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP-SLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELL 255 (927)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l 255 (927)
.+.+|++.+.++|.++++|++..||..|+++++.++ .+.+ ++..+..|..++|.++..+...+..+|.+.+..+++.+
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~-~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFA-EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEAL 230 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHH
Confidence 999999999999999999996669999999999999 8874 56678899999999999999999999999999999999
Q ss_pred HHHHccCcHHHHHHHHHHHHHHHHHhhcc---------------------------------------------------
Q 002400 256 IELAATEPRFLRKQLVDVVGSMLQVAEAE--------------------------------------------------- 284 (927)
Q Consensus 256 ~~l~~~~~~~~~~~l~~ll~~ll~~~~~~--------------------------------------------------- 284 (927)
.++++..|+++++++..++.++++++.|+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence 99999999999999999999998877543
Q ss_pred ----------------------------------------CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHH
Q 002400 285 ----------------------------------------AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQV 324 (927)
Q Consensus 285 ----------------------------------------~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l 324 (927)
+++..++++++|+.|+||+++|+.+++||++.+.++++++
T Consensus 311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~I 390 (1075)
T KOG2171|consen 311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKI 390 (1075)
T ss_pred hccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400 325 VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP 404 (927)
Q Consensus 325 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 404 (927)
++.++++|+|++|+||++||.++|++++++.|++++.+++.+.|.|+..+++..+++|+.+|+.++.+|.+.+.++.+.|
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999999999999999999999999999999998889999999999999997789999999999999999999999999
Q ss_pred chHHHHH-HHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400 405 YLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA 483 (927)
Q Consensus 405 ~l~~l~~-~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 483 (927)
|++.+|+ .+..+++++++.+|+.++.+|++++.+++..|.||++.+||.|.+.+++..+++.+.+|++.++|++.++.+
T Consensus 471 YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A 550 (1075)
T KOG2171|consen 471 YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARA 550 (1075)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence 9999999 555566788899999999999999999999999999999999999999988889999999999999999999
Q ss_pred hCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCC
Q 002400 484 VGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDV 563 (927)
Q Consensus 484 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~ 563 (927)
+|++.|.|++.++++.+..+..+..+.+++.++|.+.+|+++|+.+|++|.||++.+||.+++....+++....|++ |+
T Consensus 551 VGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~-d~ 629 (1075)
T KOG2171|consen 551 VGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEE-DE 629 (1075)
T ss_pred hhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCch-hh
Confidence 99999999999999999988766777889999999999999999999999999999999999999999887766332 23
Q ss_pred CCCCCcchhhhhccCCc-eeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHH
Q 002400 564 DIDDEDESIQTITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP 642 (927)
Q Consensus 564 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~ 642 (927)
+...++++|++...+|+ .++++++++++|..||.+|+.++..++.+|.||++++++..++.+..++|++||++|+.+++
T Consensus 630 e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p 709 (1075)
T KOG2171|consen 630 EEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMP 709 (1075)
T ss_pred hhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33346788999888887 99999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhc---------------------
Q 002400 643 ELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQ--------------------- 701 (927)
Q Consensus 643 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~--------------------- 701 (927)
.++++...++.+| +.+...+|..+.+.++..+.+|+++++...+++++..|++
T Consensus 710 ~ll~~~~~A~~~~------p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~ 783 (1075)
T KOG2171|consen 710 QLLTCALKACQGG------PEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLA 783 (1075)
T ss_pred HHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence 9999998876433 5589999999999999999999999999999999999986
Q ss_pred ----------------------------------------------------------------------CCCCChhhHH
Q 002400 702 ----------------------------------------------------------------------GKDKTAEERR 711 (927)
Q Consensus 702 ----------------------------------------------------------------------~~~~~~~~r~ 711 (927)
..+..+. |+
T Consensus 784 ~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~ 862 (1075)
T KOG2171|consen 784 QLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQ 862 (1075)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HH
Confidence 5556666 99
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCC
Q 002400 712 IAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALH 791 (927)
Q Consensus 712 ~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~ 791 (927)
+|+++++++++++|+...+|.+.++|.++..+.|++|+||++|+|++|.+++++|+.+.|.+...++.|..++..++++.
T Consensus 863 ~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~ 942 (1075)
T KOG2171|consen 863 WAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLART 942 (1075)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHH
Q 002400 792 SDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIF 871 (927)
Q Consensus 792 ~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~ 871 (927)
+++..++|||++|++|++.+++..+++++++|.|+++||+++|.+|+...|++|+.|+++++|.+++++++++|+|+.++
T Consensus 943 Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~ 1022 (1075)
T KOG2171|consen 943 EENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVC 1022 (1075)
T ss_pred HHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhhcC
Q 002400 872 AEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS 927 (927)
Q Consensus 872 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 927 (927)
+..+...+ ...++...+++.+++++.+ |...|.+.++.||++.+.+|++.+++
T Consensus 1023 ~~~~~~~~-~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~~ 1075 (1075)
T KOG2171|consen 1023 AESLADKK-IEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLNL 1075 (1075)
T ss_pred HhhhhccC-CCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 99997653 4445555599999999987 66679999999999999999998864
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-72 Score=573.46 Aligned_cols=740 Identities=20% Similarity=0.301 Sum_probs=612.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
.+|+.++|++.+|||+++|+.+...++++.. .|+ |..+|+.++.. +.+..+|+.|+.+|||.+..+ |..+
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~------~~~~ 83 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH------YNSI 83 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc------ccCC
Confidence 4688889999999999999999999999988 698 88999999887 788999999999999999998 9999
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400 97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE 176 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 176 (927)
+++....+|+.+++.+.+. ++-||..++.+|..|+....- ..||+++|.|.+++.+++.+..++|+.+|.++|+...+
T Consensus 84 ~~~~~~yiKs~~l~~lgd~-~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDA-SPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred ChHHHHHHHHHHHhhccCc-hHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH
Confidence 9999999999999999986 889999999999999887554 68999999999999999999999999999999999887
Q ss_pred HHHH-----hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC---------------------CchhH--------
Q 002400 177 VLIA-----HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP---------------------SLGEK-------- 222 (927)
Q Consensus 177 ~l~~-----~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~-------- 222 (927)
.+.. -++.++|.|++..+++++.+|..|+.|+..++ ..-. +++-+
T Consensus 162 ~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i-~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv 240 (885)
T KOG2023|consen 162 FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI-IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALV 240 (885)
T ss_pred HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee-ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 6553 46778899999999999999999999988765 2110 11111
Q ss_pred -------HhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC--cHHHHHHHHHHHHHHHHHh----------h-
Q 002400 223 -------ERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE--PRFLRKQLVDVVGSMLQVA----------E- 282 (927)
Q Consensus 223 -------~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~l~~ll~~ll~~~----------~- 282 (927)
..+.+.++.+++.+.+..++.|+.++.+|+|+|..+++.+ +..+.+|+++++|.+++-+ +
T Consensus 241 ~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 241 FLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN 320 (885)
T ss_pred HHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC
Confidence 1122233444444444456678999999999999999874 6789999999999988432 1
Q ss_pred cc-------------------------------------------------------------------------Cchhh
Q 002400 283 AE-------------------------------------------------------------------------AVFPG 289 (927)
Q Consensus 283 ~~-------------------------------------------------------------------------~~i~~ 289 (927)
++ |++.+
T Consensus 321 ~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 321 NEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE 400 (885)
T ss_pred ccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 00 78888
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ 369 (927)
.+.+++|.+|+|++.++|+++|||.+.+.+|++.++|+++..|.|..|.||..+||+|++++.|...+...+|+..++..
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ 480 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEG 480 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998655556899999999
Q ss_pred HHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhH--HhH
Q 002400 370 LVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQ--KYY 447 (927)
Q Consensus 370 ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~--~~~ 447 (927)
+++.+-| ++.+||++||+++..+-+..+.+ +.||+..+++.|..+++.+..+-..-.+.|||+++..+|..+. .|+
T Consensus 481 ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi 558 (885)
T KOG2023|consen 481 LLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI 558 (885)
T ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH
Confidence 9999999 99999999999999999998866 5699999999999999988877667788999999999998764 599
Q ss_pred HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 002400 448 DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCK 527 (927)
Q Consensus 448 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (927)
+.++|.|.+.|..-.|+ ++.+-. .+||++.++.++| ..|.||+..+++...++... +...+++
T Consensus 559 qiLmPPLi~KW~~lsd~-DKdLfP-LLEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~~--------------t~q~~~~ 621 (885)
T KOG2023|consen 559 QILMPPLIEKWELLSDS-DKDLFP-LLECLSSIASALG-VGFLPYAQPVYQRCFRILQK--------------TLQLLAK 621 (885)
T ss_pred HHhccHHHHHHHhcCcc-cchHHH-HHHHHHHHHHHHh-ccccccCHHHHHHHHHHHHH--------------HHHHHHh
Confidence 99999999999875443 222221 3899999999999 78999999998887664321 1222221
Q ss_pred HhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhc
Q 002400 528 CLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELK 607 (927)
Q Consensus 528 ~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~ 607 (927)
. ..++.+.. . |+.+ ...++++++.+++++|
T Consensus 622 ~--------------------~~~~~~~~-------------p--------dkdf---------iI~sLDL~SGLaegLg 651 (885)
T KOG2023|consen 622 V--------------------QQDPTVEA-------------P--------DKDF---------IIVSLDLLSGLAEGLG 651 (885)
T ss_pred c--------------------cCCccccC-------------C--------Ccce---------EEEeHHHHhHHHHHhh
Confidence 1 11111100 0 0111 1347888999999988
Q ss_pred ccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHH
Q 002400 608 EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEID 687 (927)
Q Consensus 608 ~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~ 687 (927)
++..|.+.+. .++..+++++.+
T Consensus 652 ~~ie~Lva~s-----------------------------------------------------nl~~lll~C~~D----- 673 (885)
T KOG2023|consen 652 SHIEPLVAQS-----------------------------------------------------NLLDLLLQCLQD----- 673 (885)
T ss_pred hchHHHhhhc-----------------------------------------------------cHHHHHHHHhcc-----
Confidence 8754332210 022233444433
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCC
Q 002400 688 ICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGS 767 (927)
Q Consensus 688 v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~ 767 (927)
..+++|++++..+|++...|.+++.|+...++|.+...+..++-.+..||+|++|.++...|.
T Consensus 674 -----------------~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 674 -----------------EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch
Confidence 458999999999999999999999999999999999888888889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHH
Q 002400 768 VFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSCLPLKGDLIEAKVVHAQL 845 (927)
Q Consensus 768 ~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l 845 (927)
..++|+..++..|..+++.++. ...+.+|.+.++||+...+|+.+ +++.++..|+..|....|.+|+..+|+++
T Consensus 737 ~~~~~v~~vl~~L~~iin~~~~----~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~ 812 (885)
T KOG2023|consen 737 KMKQYVSPVLEDLITIINRQNT----PKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGL 812 (885)
T ss_pred hhhhHHHHHHHHHHHHhcccCc----hHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHH
Confidence 9999999999999999987753 57799999999999999999988 69999999999999999999999999999
Q ss_pred HHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhh
Q 002400 846 CSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSIL 925 (927)
Q Consensus 846 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 925 (927)
|.++..++..+... +..|+.+...+. .+.++.|..+.++|.+++.++++.+|++...++||..+..|++.|
T Consensus 813 c~mi~vNp~~vv~~--------~~f~c~aiAsw~-np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~a~y 883 (885)
T KOG2023|consen 813 CNMINVNPSGVVSS--------FIFICDAIASWS-NPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQAFY 883 (885)
T ss_pred HHheeeCchhhhhh--------hHHHHHHHhccc-ChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHHHHh
Confidence 99998776655442 334455554454 455889999999999999999999999999999999999999987
Q ss_pred c
Q 002400 926 S 926 (927)
Q Consensus 926 ~ 926 (927)
+
T Consensus 884 ~ 884 (885)
T KOG2023|consen 884 G 884 (885)
T ss_pred C
Confidence 5
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-53 Score=443.09 Aligned_cols=702 Identities=20% Similarity=0.311 Sum_probs=540.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcc-----cccccc
Q 002400 21 HFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDS-----TSFIFT 94 (927)
Q Consensus 21 ~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~-----~~~~w~ 94 (927)
++.++|..++|||...|++||.+|+++..++...|+..|.++|.+ +.++..|..|++.|||.+..+++ ..++|.
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 467888889999999999999999999999988999999999998 78899999999999999988754 678899
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCCh-HHHHHHHHHHHHhhhh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFND-KIQESALLILSRMSQF 173 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~-~~r~~al~~l~~l~~~ 173 (927)
.++.+.|++||+.++.+|++. .+..++.++++++.||..+.|.+.||++++.+.....+..+ .+|++++.+++.+|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~~-ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSP-EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCC-CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 999999999999999999975 88999999999999999999999999999999998876555 5999999999999998
Q ss_pred hH-HHHHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHH---HhhCCCchhH-------------------------
Q 002400 174 VS-EVLIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFI---MNCLPSLGEK------------------------- 222 (927)
Q Consensus 174 ~~-~~l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~---~~~~~~~~~~------------------------- 222 (927)
+. +.+..+.+.++..+.+++... +..||.+|+++|...+ ..+|+++.++
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~C 240 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQC 240 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHH
Confidence 65 456678889999999988764 7889999999999844 2355433221
Q ss_pred -----HhHHhhHHHHHH-HHH----HHHhcCChhHHHHHHHHHHHHHccC----------------c---HHHHHHHHHH
Q 002400 223 -----ERFLDLLPLMMR-TLT----EALNKGNESSAQEALELLIELAATE----------------P---RFLRKQLVDV 273 (927)
Q Consensus 223 -----~~~~~~~p~ll~-~l~----~~l~~~~~~~~~~a~~~l~~l~~~~----------------~---~~~~~~l~~l 273 (927)
..+..+++..|. .+. ..+.+++++++.+++|+|.++++.+ | .|.+..++.+
T Consensus 241 lvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v 320 (859)
T KOG1241|consen 241 LVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDV 320 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHh
Confidence 122333433332 233 3456789999999999999988542 2 3456678889
Q ss_pred HHHHHHHhhc--c---------------------------------CchhhhhCCcchhHHHHHHHHHHHHhhhch-HHH
Q 002400 274 VGSMLQVAEA--E---------------------------------AVFPGFLAAPEWQKHHAVLIALAQIAEGCS-KVM 317 (927)
Q Consensus 274 l~~ll~~~~~--~---------------------------------~~i~~~l~~~~~~~r~aal~al~~i~~~~~-~~~ 317 (927)
+|.+++.+.. + ||+++.+++++|+.|++|.+++|++.+|.. +..
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L 400 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL 400 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence 9999887632 1 889999999999999999999999999865 466
Q ss_pred HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhH-HHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhc
Q 002400 318 IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPEL-QTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 318 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~ 396 (927)
.+...+.+|.++..+.|++-.||.++.|++|++++.+.... ...+...+++.+++.+.| .|+|..++||++..+++.
T Consensus 401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEA 478 (859)
T ss_pred hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999876433 246888899999999998 899999999999999965
Q ss_pred CCC--------ccccCchHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH----HHhc-
Q 002400 397 CTP--------DILTPYLDGIVSKLLVLLQN---GKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKA----ILVN- 460 (927)
Q Consensus 397 ~~~--------~~~~~~l~~l~~~L~~~l~~---~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~----~l~~- 460 (927)
+.. +...|+++.++..|+..-+. .....|..++++++.+++.+.++..|-...+.+.+.. .++.
T Consensus 479 ~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~ 558 (859)
T KOG1241|consen 479 AYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQ 558 (859)
T ss_pred HHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 23457899999999998765 3478999999999999999998776655555544444 3331
Q ss_pred ----ccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccc
Q 002400 461 ----ANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPY 536 (927)
Q Consensus 461 ----~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (927)
........+.+-...+++.+.+.+|+ .+.++.+.+|..++++.+. .....+.+.++-+++.++..+|..|..|
T Consensus 559 ~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s--~~s~~v~e~a~laV~tl~~~Lg~~F~ky 635 (859)
T KOG1241|consen 559 ILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES--KRSAVVHEEAFLAVSTLAESLGKGFAKY 635 (859)
T ss_pred hccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC--CccccchHHHHHHHHHHHHHHhHhHHHH
Confidence 11113445666677889999999995 8999999999999997765 2234467888999999999999999999
Q ss_pred hhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHH
Q 002400 537 MSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQ 616 (927)
Q Consensus 537 l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~ 616 (927)
++.+.|.+...++...++ .-...|..+.+.++.+++..|.||.+.
T Consensus 636 m~~f~pyL~~gL~n~~e~-----------------------------------qVc~~aVglVgdl~raL~~~i~py~d~ 680 (859)
T KOG1241|consen 636 MPAFKPYLLMGLSNFQEY-----------------------------------QVCAAAVGLVGDLARALEDDILPYCDE 680 (859)
T ss_pred HHHHHHHHHHHhhcchHH-----------------------------------HHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999653211 113578899999999999999999999
Q ss_pred HHHHHhhhhccc-CcHHHHHHHHHHHHHHHHHHHHHHHhc--------------CC---CCCCHHHHHHHHHHHHHH---
Q 002400 617 VAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAVEKG--------------QS---QGRNESYVKQLTDYIIPA--- 675 (927)
Q Consensus 617 ~~~~l~~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~~il~~--- 675 (927)
++..++..++.+ .|.+|+-....+++++..+....+++- .. .....+|..++...++..
T Consensus 681 ~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~g 760 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTG 760 (859)
T ss_pred HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 999999998763 466888889999999987764432210 00 011122333333333322
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhhc----CCCCChhhHHHHHHHHHHHHHHhhhhhhhhH-H-hHHHHHH-HHccCCCh
Q 002400 676 LVEALHKEPEIDICASMLDALNESIQ----GKDKTAEERRIAICIFDDVMEHCREAALKYY-D-TYLPFLL-EACNDKHP 748 (927)
Q Consensus 676 ll~~l~~e~d~~v~~~~l~~l~~~~~----~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~-~-~ll~~l~-~~l~d~~~ 748 (927)
+++.++...+...+..++..+-..+. .++.+...-..|++.|||++...|.+..+++ . ..+..++ ++.+....
T Consensus 761 i~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~ 840 (859)
T KOG1241|consen 761 IIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQ 840 (859)
T ss_pred HHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhh
Confidence 22333333333333333333322222 4455677788899999999999998877633 2 4444444 44456677
Q ss_pred hHHhhHhHHHHHHHh
Q 002400 749 DVRQAAVYGIGVCAE 763 (927)
Q Consensus 749 ~vr~~a~~~lg~l~~ 763 (927)
..|..|-|+...+-+
T Consensus 841 ~tK~~A~wa~e~ikr 855 (859)
T KOG1241|consen 841 KTKDLARWATEEIKR 855 (859)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888888766543
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.4e-44 Score=361.21 Aligned_cols=688 Identities=17% Similarity=0.237 Sum_probs=519.9
Q ss_pred CHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcc-----cc
Q 002400 18 NPAHFETLISN-LMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDS-----TS 90 (927)
Q Consensus 18 ~~~~l~~~L~~-~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~-----~~ 90 (927)
...++..+.++ .+|||++.|..||.+|+++...+..+|+..+.+++.+ +..++.|..|++.|||.+..+++ ..
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 34566666666 5999999999999999999998999999999999998 88999999999999999988764 67
Q ss_pred ccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 002400 91 FIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFND-KIQESALLILSR 169 (927)
Q Consensus 91 ~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~-~~r~~al~~l~~ 169 (927)
..|..+++|.|+++|...+++|++. .+...+.+++.++.||+.+.|.+.||+++..+......+.+ ..+..++.++++
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s~-epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKSP-EPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 8899999999999999999999986 89999999999999999999999999999999998877655 578889999999
Q ss_pred hhhhhHH-HHHHhHHHHH-HHHHhhhCCC-CHHHHHHHHHHHHH---HHHhhCCCchhH---------------------
Q 002400 170 MSQFVSE-VLIAHGDTLH-EVFSKFLGSN-NFDLRIAALEATVN---FIMNCLPSLGEK--------------------- 222 (927)
Q Consensus 170 l~~~~~~-~l~~~~~~l~-~~l~~~l~~~-~~~vr~~a~~~l~~---l~~~~~~~~~~~--------------------- 222 (927)
.|+...+ .+....+.++ .++...+..+ +..||.+|+++|.. +++.++..+.++
T Consensus 161 ~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~a 240 (858)
T COG5215 161 HCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHA 240 (858)
T ss_pred HhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHH
Confidence 9987544 5554455444 4444445544 77899999999987 343444322211
Q ss_pred ---------HhHHhhHHHHHHHH-----HHHHhcCChhHHHHHHHHHHHHHccC----------c-------HHHHHHHH
Q 002400 223 ---------ERFLDLLPLMMRTL-----TEALNKGNESSAQEALELLIELAATE----------P-------RFLRKQLV 271 (927)
Q Consensus 223 ---------~~~~~~~p~ll~~l-----~~~l~~~~~~~~~~a~~~l~~l~~~~----------~-------~~~~~~l~ 271 (927)
..+..++|.+++.. ...+.+++++++.+++|+|.++++.+ | .|-+..+.
T Consensus 241 afgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~ 320 (858)
T COG5215 241 AFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVA 320 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHH
Confidence 13345566665532 22346788999999999999998653 1 23444566
Q ss_pred HHHHHHHHHhhcc-----------------------------------CchhhhhCCcchhHHHHHHHHHHHHhhhchH-
Q 002400 272 DVVGSMLQVAEAE-----------------------------------AVFPGFLAAPEWQKHHAVLIALAQIAEGCSK- 315 (927)
Q Consensus 272 ~ll~~ll~~~~~~-----------------------------------~~i~~~l~~~~~~~r~aal~al~~i~~~~~~- 315 (927)
.++|.++.++.+. .|+++.+++++|+.|++|++++|++.+|..+
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 7888888776421 5788889999999999999999999998654
Q ss_pred HHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHH-HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 316 VMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQ-TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 316 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
...++.++.+|.+...+.|+.-.|..+++||+|+++.+....+. ..++...+...+..+.| .|.+..+++|...+++
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D--~p~~~~ncsw~~~nlv 478 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD--CPFRSINCSWRKENLV 478 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc--cchHHhhhHHHHHhHH
Confidence 56678889999999999999999999999999999988754432 24666677777777777 7888899999999999
Q ss_pred hcCCC------ccccCchHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcch
Q 002400 395 ENCTP------DILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSN 466 (927)
Q Consensus 395 ~~~~~------~~~~~~l~~l~~~L~~~l~--~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~ 466 (927)
+...+ +.+.++.+.++..|+..-+ ......|..+++++|.++..+++...+.+-.+..+..+.+.
T Consensus 479 ~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~------- 551 (858)
T COG5215 479 DHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLD------- 551 (858)
T ss_pred HhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH-------
Confidence 87653 3456778888888887543 33467899999999999998887766666555555555442
Q ss_pred hhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHH
Q 002400 467 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQ 546 (927)
Q Consensus 467 ~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 546 (927)
+|++..+..+..+.-. .. +.+.+-.+..+..+.+..+.++.+--+++|..+++
T Consensus 552 --------~~isv~~q~l~~eD~~-----~~--------------~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r 604 (858)
T COG5215 552 --------ECISVLGQILATEDQL-----LV--------------EELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIR 604 (858)
T ss_pred --------HHHHHhhhhhhhHHHH-----HH--------------HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 2444443222211000 00 12334466678888899999999999999999999
Q ss_pred HcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhc
Q 002400 547 SAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK 626 (927)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 626 (927)
.+........ . ......++.+...+++.|..|++.++|.+.+-+.
T Consensus 605 ~les~~~t~~------------~-----------------------~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 605 ILESTKPTTA------------F-----------------------GDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHhccCCchh------------h-----------------------hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 9966411110 0 1123357788889999999999999999999885
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCC
Q 002400 627 FYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKT 706 (927)
Q Consensus 627 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~ 706 (927)
. .+..|-..|+.+++++.+.... -+..+.+.++..|++.+.++. ..
T Consensus 650 ~-~d~~v~~~avglvgdlantl~~-------------df~~y~d~~ms~LvQ~lss~~--------------------~~ 695 (858)
T COG5215 650 C-TDRFVLNSAVGLVGDLANTLGT-------------DFNIYADVLMSSLVQCLSSEA--------------------TH 695 (858)
T ss_pred c-hhHHHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcChh--------------------hc
Confidence 4 4778899999999999887631 277888888999999887753 22
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHcc-CCC------hhHHhhHhHH-------HHHHHhhcCCCcHHH
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACN-DKH------PDVRQAAVYG-------IGVCAEFGGSVFKPL 772 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-d~~------~~vr~~a~~~-------lg~l~~~~~~~~~~~ 772 (927)
-+.+-..+.++|+++...|..+.+|++.++-.+...-+ ++. .+.|.++..+ +|.-.+...+.+.||
T Consensus 696 R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Py 775 (858)
T COG5215 696 RDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPY 775 (858)
T ss_pred cccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhH
Confidence 34556789999999999999999999998877776543 221 1345544332 333333334678999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCC
Q 002400 773 VGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDS 815 (927)
Q Consensus 773 ~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~ 815 (927)
+..|.+.+..+-.||+. +...+..+.+-+|-+...+|..
T Consensus 776 v~sif~~i~~iaeDp~~----se~~traalGLigDla~mfpkg 814 (858)
T COG5215 776 VISIFHKIGMIAEDPNG----SEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred HHHHHHHHHHhhcCCcc----chhHHHHHHHHHHHHHHhCCCc
Confidence 99999999988888863 2334457888899988888775
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=326.74 Aligned_cols=729 Identities=17% Similarity=0.218 Sum_probs=534.6
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHHHhh-ChhHH---HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 25 LISNLMS-SSNEHRSHAEVLLSHLRQS-HPDAF---ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 25 ~L~~~~s-~d~~~r~~Ae~~l~~~~~~-~p~~~---~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
+|..+++ +...+|+.--+...++.+. -|+.| +..|.+.. +++++..|..|..+|....... ..-...
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-~S~~~~~rE~al~il~s~~~~~-------~~~~~~ 155 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-KSPNPSLRESALLILSSLPETF-------GNTLQP 155 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-cCCCcchhHHHHHHHHhhhhhh-------ccccch
Confidence 3444444 3445666655555554332 23334 33333332 3899999999999998876543 222223
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC-CCCC---ccchHHHHHH----HhcCCChHHHHHHHHHHHHhh
Q 002400 100 TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL-PDGD---WPELIPFIFQ----CLVTFNDKIQESALLILSRMS 171 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~-~~~~---w~~ll~~l~~----~l~s~~~~~r~~al~~l~~l~ 171 (927)
....++..+.+.+.+.+.+ ||..++++++.++...- .... +..++|.++. .++.++...-..++.+|..+.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 4456888899999987555 99999999999998763 1223 3455665554 445566666788999999999
Q ss_pred hhhHHHHHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHHhhCC-------------------------Cc-----
Q 002400 172 QFVSEVLIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIMNCLP-------------------------SL----- 219 (927)
Q Consensus 172 ~~~~~~l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~-------------------------~~----- 219 (927)
+..+.-+.+++..++++.++...+. +..+|..|+.++..++ ++-+ ..
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~-e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLS-EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH-HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 9999999999999999999988876 7899999999999987 5421 00
Q ss_pred ------hh---H-----Hh---------HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 002400 220 ------GE---K-----ER---------FLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGS 276 (927)
Q Consensus 220 ------~~---~-----~~---------~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ 276 (927)
++ . .. -..++|.+++.+..++++.++..+..++-.+..+++.+++.+.+.++++++.
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00 0 00 0245788999999999999999999999999999999999999999999998
Q ss_pred HHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHH-HHHHHHhccCCC-CHHHHHHHHHHHHHhHhhh
Q 002400 277 MLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQ-VVSMVLNSFQDP-HPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 277 ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~-l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~ 354 (927)
.+ ..++|+++++|.||+.++|+++......+..+..+ +.|.+...+.|+ +++|...|+.++-.+++.+
T Consensus 394 Vl----------~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 394 VL----------NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HH----------hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 87 77889999999999999999999887766666554 455777777665 7899999999999999998
Q ss_pred chhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC----hhHHHHHHH
Q 002400 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK----QMVQEGALT 430 (927)
Q Consensus 355 ~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~----~~v~~~a~~ 430 (927)
.++...+|++.++...+..+.+.+.+.||+.+..+|+.+++.... .+.||.+.+|+.|.+.+.+.+ ..+|...+.
T Consensus 464 ~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~-~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmE 542 (1075)
T KOG2171|consen 464 DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE-KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTME 542 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHH
Confidence 888778999999996666555548899999999999999999874 477999999999999998765 457888899
Q ss_pred HHHHHHHHhh-hhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhcc---
Q 002400 431 ALASVADSSQ-GQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS--- 506 (927)
Q Consensus 431 al~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~--- 506 (927)
|++.++.+.| +.|.|+...++..+...-.+.. .++..+|+..+...+.+++..| +.|.||++.+|+.++.-...
T Consensus 543 cisli~~AVGke~F~~~a~eliqll~~~~~~~~-~~dd~~~sy~~~~warmc~ilg-~~F~p~L~~Vmppl~~ta~~~p~ 620 (1075)
T KOG2171|consen 543 CLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ-DDDDPLRSYMIAFWARMCRILG-DDFAPFLPVVMPPLLKTARLDPD 620 (1075)
T ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch-hhccccHHHHHHHHHHHHHHhc-hhhHhHHHHHhHHHHHhhccCCc
Confidence 9999999999 6799999999999988843222 2456688888999999999999 68999999999988752211
Q ss_pred --CCCCC------------------C----------cchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcc-------
Q 002400 507 --QMEAD------------------D----------PTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQ------- 549 (927)
Q Consensus 507 --~~~~~------------------~----------~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~------- 549 (927)
.++.+ + .-+..+...++.++..++..|.||+.++++..+-.+.
T Consensus 621 ~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgV 700 (1075)
T KOG2171|consen 621 VALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGV 700 (1075)
T ss_pred ccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHH
Confidence 00000 0 0244566778888888999999999998882221110
Q ss_pred ------------------------------------------cCCCcc-------------------ccCCCC-------
Q 002400 550 ------------------------------------------LKPDVI-------------------ITSADS------- 561 (927)
Q Consensus 550 ------------------------------------------~~~~~~-------------------~~~~~~------- 561 (927)
.+++.. ...++.
T Consensus 701 R~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 701 RKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 001000 000000
Q ss_pred -----------------CCCCCC-CcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 002400 562 -----------------DVDIDD-EDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 623 (927)
Q Consensus 562 -----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 623 (927)
+++++| +.++-+.. .+ +...+ -..+.+.+..+++..+++|.|+++.+.|.+++
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~--~e-----~d~~l--l~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~ 851 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL--DE-----QDAYL--LDAISDILAALAKALKGSFLPFFENFLPLIVK 851 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH--hh-----hhHHH--HHHHHHHHHHHHHHccccccHHHHHHHHHHHH
Confidence 000111 11111110 00 00111 23467788899999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCC
Q 002400 624 LLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGK 703 (927)
Q Consensus 624 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~ 703 (927)
++....... |+.|..++++++..++.+ ..++.+.++|.+++.+.+
T Consensus 852 ~l~~~~~~~-r~~av~~~~d~ie~~~~a-------------~~~~~~~~~p~~~~~~~d--------------------- 896 (1075)
T KOG2171|consen 852 LLKSKKTVA-RQWAVCIFDDLIEGCGEA-------------SAKYKERFLPLVLEALQD--------------------- 896 (1075)
T ss_pred HHhcCCcHH-HHHHHHHHHHHHHhcccc-------------cchHHHHHHHHHHHHcCC---------------------
Confidence 998865556 999999999999876321 456778888888888754
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCC------hhHHhhHhHHHHHHHhhcCCCcHHHHHHHH
Q 002400 704 DKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKH------PDVRQAAVYGIGVCAEFGGSVFKPLVGEAL 777 (927)
Q Consensus 704 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~------~~vr~~a~~~lg~l~~~~~~~~~~~~~~il 777 (927)
.++++|+.|.+.+|.++++.|..+.+.....+|.|...+..++ ...+.||+.+++.++.+.+..+. +.+++
T Consensus 897 -~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl 973 (1075)
T KOG2171|consen 897 -SDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVL 973 (1075)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHH
Confidence 4699999999999999999999988888888888888776443 34778999999999998876544 78888
Q ss_pred HHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhc
Q 002400 778 SRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSC 828 (927)
Q Consensus 778 ~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~ 828 (927)
+.+...+.-.. +.....-....++.++..++..+ +.++.+|.++..
T Consensus 974 ~~~l~~LPl~~-----D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v 1021 (1075)
T KOG2171|consen 974 PAWLSWLPLKE-----DKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSV 1021 (1075)
T ss_pred HHHHHhCCCcc-----chhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHH
Confidence 88888775322 11122235778899998776655 555566655544
No 6
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-27 Score=259.71 Aligned_cols=461 Identities=16% Similarity=0.223 Sum_probs=325.5
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccc
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTR 95 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~ 95 (927)
||.+.+.+++.++.++|++.|+.||++|+++++ .|+ |+..|++++.+ +.+..+||.|+++|||.|.++ |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~------W~~ 72 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS------WSS 72 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc------CCc
Confidence 678999999999999999999999999999999 587 89999999987 677888999999999999998 874
Q ss_pred ---------cCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHH
Q 002400 96 ---------LAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLI 166 (927)
Q Consensus 96 ---------l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~ 166 (927)
+.++.|..||.+++..+.+. ++.+|.++..++..|...++| +.||.+++.+-.++++++.++..+|+.|
T Consensus 73 ~~~~g~~~~I~e~dk~~irenIl~~iv~~-p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~ 150 (1010)
T KOG1991|consen 73 HEAPGRPFGIPEEDKAVIRENILETIVQV-PELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLC 150 (1010)
T ss_pred cCCCCCcCCCChHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence 67899999999999999986 889999999999999999999 9999999999999999999999999999
Q ss_pred HHHhhhhhH-----------HHHHHhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHHHHhhCC---------------
Q 002400 167 LSRMSQFVS-----------EVLIAHGDTLHEVFSKFLGSNN---FDLRIAALEATVNFIMNCLP--------------- 217 (927)
Q Consensus 167 l~~l~~~~~-----------~~l~~~~~~l~~~l~~~l~~~~---~~vr~~a~~~l~~l~~~~~~--------------- 217 (927)
+..+++.+. ..+...++.+++.+.+.+.+++ .++....++.+..++.-.+|
T Consensus 151 l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l 230 (1010)
T KOG1991|consen 151 LYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMEL 230 (1010)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHH
Confidence 999998764 1234456777777777777663 34455555544443311111
Q ss_pred ----------------CchhH---------------------------------HhH-----HhhHHHHHHHHHHHHhc-
Q 002400 218 ----------------SLGEK---------------------------------ERF-----LDLLPLMMRTLTEALNK- 242 (927)
Q Consensus 218 ----------------~~~~~---------------------------------~~~-----~~~~p~ll~~l~~~l~~- 242 (927)
+++.| +.| ..+.+.+++.+.+.+..
T Consensus 231 ~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~ 310 (1010)
T KOG1991|consen 231 FLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQW 310 (1010)
T ss_pred HHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 011 12334444444443321
Q ss_pred -----CChhHHHHHHHHHHHHHccC--cHHHHHHHHHHHHHHH-H----------Hhhcc--CchhhhhC--CcchhHHH
Q 002400 243 -----GNESSAQEALELLIELAATE--PRFLRKQLVDVVGSML-Q----------VAEAE--AVFPGFLA--APEWQKHH 300 (927)
Q Consensus 243 -----~~~~~~~~a~~~l~~l~~~~--~~~~~~~l~~ll~~ll-~----------~~~~~--~~i~~~l~--~~~~~~r~ 300 (927)
-.+++...++.++...+... .+.++||+..++...+ - +.+++ +++...+. ++-..-+-
T Consensus 311 ~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~ 390 (1010)
T KOG1991|consen 311 RQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDT 390 (1010)
T ss_pred HhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcH
Confidence 13455666666666655432 4677888876665432 1 11121 33333322 12233455
Q ss_pred HHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC--------CCCHHHHHHHHHHHHHhHhhhchhH--HHHhHhhHHHHH
Q 002400 301 AVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ--------DPHPRVRWAAINAIGQLSTDLGPEL--QTQFHHRLLPAL 370 (927)
Q Consensus 301 aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~--------d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~il~~l 370 (927)
||...+-.++...++ ..++.+++++..-+. ..+++-...|+..+|.+++.+.... ....-.-+++.+
T Consensus 391 Aa~~~l~~~~~KR~k---e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGK---ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred HHHHHHHHHHHhcch---hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 777777777665533 445555555444333 3478889999999999997664321 122333456667
Q ss_pred HHhccCCCCchHHHHHHHHHHHhH-hcCCCccccCchHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhhh---hhHH
Q 002400 371 VGAMDDFQNPRVQAHAASAVLNFS-ENCTPDILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQG---QFQK 445 (927)
Q Consensus 371 l~~l~~~~~~~v~~~a~~al~~l~-~~~~~~~~~~~l~~l~~~L~~~l~-~~~~~v~~~a~~al~~l~~~~~~---~~~~ 445 (927)
+..+.+ +....|.+||+.++.++ ...+. ...+..+++...+++. +....||-.|..|+..+...... .+.+
T Consensus 468 fP~f~s-~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 468 FPEFQS-PYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred hHhhcC-chhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 777788 88899999999999998 44442 2356778888888887 66678999999999999987774 4778
Q ss_pred hHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH
Q 002400 446 YYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 502 (927)
Q Consensus 446 ~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 502 (927)
+++.++.-|..+.+.... ..+ -.++..+....+ +...|++.++++.+..
T Consensus 544 hvp~~mq~lL~L~ne~En---d~L----t~vme~iV~~fs-eElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVEN---DDL----TNVMEKIVCKFS-EELSPFAVELCQNLAE 592 (1010)
T ss_pred hhhHHHHHHHHHHHhcch---hHH----HHHHHHHHHHHH-HhhchhHHHHHHHHHH
Confidence 888888888887655332 223 346666776776 6688888887776554
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-29 Score=258.93 Aligned_cols=688 Identities=17% Similarity=0.198 Sum_probs=455.1
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 002400 55 FALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELA 132 (927)
Q Consensus 55 ~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia 132 (927)
.+..+++++.+ ++++.+|..+-..|.+.-...+ +.+ .+ --++-.+.++ +..+|..++-.+-.=.
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pd-----fnn-------YL-~~IL~~~~~~-d~~~Rs~aGLlLKNnv 76 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPD-----FNN-------YL-IYILIRAKSE-DVPTRSLAGLLLKNNV 76 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccc-----hhc-------ee-eEEEeccccc-chhHHHHhhhhHhccc
Confidence 45677777777 7889999888877776643211 110 00 0011122233 4455665554443322
Q ss_pred hccCCCCCccc----hHHH----HHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHH
Q 002400 133 ASVLPDGDWPE----LIPF----IFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAA 204 (927)
Q Consensus 133 ~~~~~~~~w~~----ll~~----l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a 204 (927)
+ +.|+. ...+ ++..+.+.++.+|-..-.++..++...+-+ +.+.++|.+.+.|.+++......|
T Consensus 77 r-----~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~---~wpelLp~L~~~L~s~d~n~~EgA 148 (885)
T KOG2023|consen 77 R-----GHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQ---HWPELLPQLCELLDSPDYNTCEGA 148 (885)
T ss_pred c-----ccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccc---cchhHHHHHHHHhcCCcccccchh
Confidence 2 23332 2222 334445566666665555555555443322 568899999999999888888999
Q ss_pred HHHHHHHHHh---hCCC--------------------ch--hH---------------HhHHhhHHHHHHHHHHHHhcCC
Q 002400 205 LEATVNFIMN---CLPS--------------------LG--EK---------------ERFLDLLPLMMRTLTEALNKGN 244 (927)
Q Consensus 205 ~~~l~~l~~~---~~~~--------------------~~--~~---------------~~~~~~~p~ll~~l~~~l~~~~ 244 (927)
+.+|..++.. .++. +. -+ ..+..-+..+++.+..+.++.+
T Consensus 149 ~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~ 228 (885)
T KOG2023|consen 149 FGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDED 228 (885)
T ss_pred HHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCC
Confidence 9999988721 1110 00 00 1112223445556666666778
Q ss_pred hhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc--------------------------Cchhh---------
Q 002400 245 ESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAE--------------------------AVFPG--------- 289 (927)
Q Consensus 245 ~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~--------------------------~~i~~--------- 289 (927)
+++++..+..+.-+.+..|.-+.||++.++++|++...+. |++.+
T Consensus 229 ~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 229 PEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999766432 11111
Q ss_pred --------hhC------------------------------------C----------cchhHHHHHHHHHHHHhhhchH
Q 002400 290 --------FLA------------------------------------A----------PEWQKHHAVLIALAQIAEGCSK 315 (927)
Q Consensus 290 --------~l~------------------------------------~----------~~~~~r~aal~al~~i~~~~~~ 315 (927)
++. + .+|..|..+..+|..++.-.++
T Consensus 309 ~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~ 388 (885)
T KOG2023|consen 309 VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD 388 (885)
T ss_pred ccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH
Confidence 111 0 1399999999999999988777
Q ss_pred HHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 316 VMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 316 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
+.++.++|.+...|.++.|.||+++..++|.+++.+-..+ .++++.++|.++++++| +.+-||.-.||.|.++..
T Consensus 389 ---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-~p~LpeLip~l~~~L~D-KkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 389 ---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-VPHLPELIPFLLSLLDD-KKPLVRSITCWTLSRYSK 463 (885)
T ss_pred ---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhcc-CccceeeeeeeeHhhhhh
Confidence 6788889999999999999999999999999999876555 68999999999999999 999999999999999988
Q ss_pred cCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHH
Q 002400 396 NCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSME 475 (927)
Q Consensus 396 ~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~ 475 (927)
..-.+.-..|+.+++..+++.+-+.+.+|+++|+++++.+-+.+++.+.||+..++..|...++....+...- .++
T Consensus 464 wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI----LYD 539 (885)
T KOG2023|consen 464 WVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI----LYD 539 (885)
T ss_pred hHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh----HHH
Confidence 7654433468889999999988899999999999999999999999999999999999998887754433222 478
Q ss_pred HHHHHHHhhCcchhh-hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCc
Q 002400 476 CISLVGMAVGKDKFR-DDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDV 554 (927)
Q Consensus 476 ~l~~l~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~ 554 (927)
++|.+|..+|...-. .|.+-+|+.+++-++. ++++|.-.--.+.|++.++..+|.+|.||.+.+....+..+..
T Consensus 540 AIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~-lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~---- 614 (885)
T KOG2023|consen 540 AIGTLADSVGHALNKPAYIQILMPPLIEKWEL-LSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK---- 614 (885)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh-cCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH----
Confidence 999999999843222 3677777777765543 2223333334555666666655555555555444443333310
Q ss_pred cccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHH
Q 002400 555 IITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVR 634 (927)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR 634 (927)
++..++....
T Consensus 615 -------------------------------------------t~q~~~~~~~--------------------------- 624 (885)
T KOG2023|consen 615 -------------------------------------------TLQLLAKVQQ--------------------------- 624 (885)
T ss_pred -------------------------------------------HHHHHHhccC---------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 002400 635 KAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAI 714 (927)
Q Consensus 635 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~ 714 (927)
.+.+. . .+...-..++
T Consensus 625 ---------------------~~~~~----------------------~---------------------pdkdfiI~sL 640 (885)
T KOG2023|consen 625 ---------------------DPTVE----------------------A---------------------PDKDFIIVSL 640 (885)
T ss_pred ---------------------Ccccc----------------------C---------------------CCcceEEEeH
Confidence 00000 0 0111223466
Q ss_pred HHHHHHHHHhhhhhhhhHH--hHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCc
Q 002400 715 CIFDDVMEHCREAALKYYD--TYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHS 792 (927)
Q Consensus 715 ~~l~~l~~~~~~~~~~~~~--~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~ 792 (927)
..++-+++.+|+++.+.+. .++..++.++.|+-|+||+.|...+|.+.+...+.+.|+....++.+..-++.
T Consensus 641 DL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~------ 714 (885)
T KOG2023|consen 641 DLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP------ 714 (885)
T ss_pred HHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh------
Confidence 7788888888888887543 78899999999999999999999999999999999999999999988854432
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCC-CcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHH
Q 002400 793 DNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSCLPLK-GDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVT 869 (927)
Q Consensus 793 ~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~Lp~~-~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~ 869 (927)
++..+..||+-|+|.+....+... .+..++-.+...+..+ .+..--...-=+++.|-.. .|....+ |+++..+
T Consensus 715 ~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~-~Pe~vAp---~l~~f~~ 790 (885)
T KOG2023|consen 715 ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYI-CPEEVAP---HLDSFMR 790 (885)
T ss_pred hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc-CHHhcch---hHHHHHH
Confidence 366788999999999998765543 2333333333332211 2222222333345555533 4555555 7889898
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHH---------HHhcCCHHHHHHHHHhh
Q 002400 870 IFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLAS---------TWSSLQPQQQLALQSIL 925 (927)
Q Consensus 870 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~l~~~~~~~l~~~~ 925 (927)
-.+..++.-. +.+.|....+-+=.+.+..|...... -|...+.+.|.-.+++|
T Consensus 791 pWc~sl~~i~---DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL 852 (885)
T KOG2023|consen 791 PWCTSLRNID---DNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKIL 852 (885)
T ss_pred HHHHHhcccc---cchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHH
Confidence 8888887643 23344444333334445556443332 23445566666666665
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2.3e-26 Score=246.88 Aligned_cols=804 Identities=13% Similarity=0.150 Sum_probs=526.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc---CCChhHHHHHHHHHHhhcccCccccccccc
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS---SSLPECRAMSAILLRKHLTRDDSTSFIFTR 95 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~ 95 (927)
+..+.-+|+.+.+.+.+++..|-+.+.-+..+-++.-+..+.+-+.+ +...+.|..+++.||..+..-+ +..-+.
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~--P~~~~~ 123 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLP--PSSSSF 123 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCC--Cccccc
Confidence 45677778888888999999999999876665555455666665554 6778999999999999997652 122234
Q ss_pred cCHhHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHhccCC--CCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 002400 96 LAPSTQANLKSVLLVQLQN-ETNKSIIKKICDAVSELAASVLP--DGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQ 172 (927)
Q Consensus 96 l~~~~~~~ik~~Ll~~l~~-~~~~~vr~~~~~~i~~ia~~~~~--~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~ 172 (927)
+.+.....+-..+.+++.. +....++..+++.++.+-..... .+.-..++..+...++++...+|..++.+|+.++.
T Consensus 124 la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~ 203 (1233)
T KOG1824|consen 124 LAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLAS 203 (1233)
T ss_pred cccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH
Confidence 6677777777777777765 44555777777777766554321 01223445555555678888999999999999998
Q ss_pred hhHHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHH---hcCChhHH
Q 002400 173 FVSEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEAL---NKGNESSA 248 (927)
Q Consensus 173 ~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l---~~~~~~~~ 248 (927)
..+..+ +..++..+.+.|..+ .+..-..-+++++.+. ..- ...+...++.++..+.+.. +.++++.+
T Consensus 204 ~~~~~l---y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~-r~a-----g~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 204 SCNRDL---YVELIEHLLKGLSNRTQMSATRTYIQCLAAIC-RQA-----GHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred hcCHHH---HHHHHHHHHhccCCCCchHHHHHHHHHHHHHH-HHh-----cchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 887753 566777788888765 3333334577788777 432 1234445555555554444 56678888
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc----------------------CchhhhhCCc--chhHHHHHHH
Q 002400 249 QEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAE----------------------AVFPGFLAAP--EWQKHHAVLI 304 (927)
Q Consensus 249 ~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~----------------------~~i~~~l~~~--~~~~r~aal~ 304 (927)
..+++.+..+....|.-+.++.+.++..+++....+ +.-.+|-.|+ .|++|+||..
T Consensus 275 E~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaK 354 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAK 354 (1233)
T ss_pred HHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHH
Confidence 889999999999999999999999999999876321 1112232222 4999999999
Q ss_pred HHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhch----------------hHHHHhHhhHHH
Q 002400 305 ALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGP----------------ELQTQFHHRLLP 368 (927)
Q Consensus 305 al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----------------~~~~~~~~~il~ 368 (927)
++.++.....+.+......+-|.++..+++.+..|+...+.++-.+....++ .....++.+-.|
T Consensus 355 cl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~ 434 (1233)
T KOG1824|consen 355 CLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVP 434 (1233)
T ss_pred HHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhH
Confidence 9999999888888888888889999999999999998888887766654321 100123444444
Q ss_pred HHHHh----ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC--hhHHHHHHHHHH-HHHHHhhh
Q 002400 369 ALVGA----MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALA-SVADSSQG 441 (927)
Q Consensus 369 ~ll~~----l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~--~~v~~~a~~al~-~l~~~~~~ 441 (927)
.+++. +.+ ++...+..+...|..++...+ +.+.+|++.+++.+...+++.+ ...+..++..+. .++.+.++
T Consensus 435 ~iVkai~~qlr~-ks~kt~~~cf~lL~eli~~lp-~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 435 LIVKAIQKQLRE-KSVKTRQGCFLLLTELINVLP-GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred HHHHHHHHHHhh-ccccchhhHHHHHHHHHHhCc-chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 44444 444 455577778888888888876 5578899999999999988665 344555554444 45555666
Q ss_pred hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCc------chhhhhHHHHHHHHHHHhccCCCCCCcch
Q 002400 442 QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMEADDPTT 515 (927)
Q Consensus 442 ~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 515 (927)
.|.|+.+.+.|.+.....+ ....+-..|+-....+++.+.+ -.+.||+..++...++.... .+.|..+|
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d----~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a-~d~DqeVk 587 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGD----PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA-TDSDQEVK 587 (1233)
T ss_pred hcccchhhhhhHHHHHhcC----chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc-ccccHHHH
Confidence 7999999999999888765 4556767777777777777653 23568888888877764332 24466799
Q ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHH
Q 002400 516 SYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATA 595 (927)
Q Consensus 516 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a 595 (927)
+.++.|.+.+...+|+.....++.+++.+++.+..++ .+..|
T Consensus 588 eraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi--------------------------------------TRl~A 629 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI--------------------------------------TRLTA 629 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh--------------------------------------HHHHH
Confidence 9999999999999999899999999999999996531 35678
Q ss_pred HHHHHHHHHH-hcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCC----
Q 002400 596 CNMLCCYADE-LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKG---------QSQGRN---- 661 (927)
Q Consensus 596 ~~~l~~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~---------~~~~~~---- 661 (927)
.+++..++.. +.-+..|-+.++++.+...+... +...|.....++..++........+. .+.-..
T Consensus 630 vkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlh 708 (1233)
T KOG1824|consen 630 VKALTLIAMSPLDIDLSPVLTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLH 708 (1233)
T ss_pred HHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHH
Confidence 8888888765 44566788888888888777653 56677777788877777652110000 000000
Q ss_pred -HHH---------------HHHHHHHHHHHHHHHHcc----------------------CChHH----------------
Q 002400 662 -ESY---------------VKQLTDYIIPALVEALHK----------------------EPEID---------------- 687 (927)
Q Consensus 662 -~~~---------------~~~~~~~il~~ll~~l~~----------------------e~d~~---------------- 687 (927)
.+. .....+.+++.++..+.+ .++.+
T Consensus 709 vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 709 VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQV 788 (1233)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccccc
Confidence 000 001111122222221111 00000
Q ss_pred ---HHHHHHHHHHHhhc----------------------CCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHH
Q 002400 688 ---ICASMLDALNESIQ----------------------GKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEA 742 (927)
Q Consensus 688 ---v~~~~l~~l~~~~~----------------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 742 (927)
+-..+.-+++.|.. ....+...|..|+-++|++..+-+....+ .+-..+++.
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~---e~~~~iiea 865 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQN---ELKDTIIEA 865 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcch---hhHHHHHHH
Confidence 00000111111111 44667788899999999988876654333 444477889
Q ss_pred ccCCChhHHhhHhHHHHHHHhhcC----------------------------------CCcHHHHHHHHHHHHHhhcCCC
Q 002400 743 CNDKHPDVRQAAVYGIGVCAEFGG----------------------------------SVFKPLVGEALSRLDFVIRHPN 788 (927)
Q Consensus 743 l~d~~~~vr~~a~~~lg~l~~~~~----------------------------------~~~~~~~~~il~~L~~~l~~~~ 788 (927)
++.++++|+.+|+++||.++...- +.+.|+++.|+..|.+.....
T Consensus 866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~- 944 (1233)
T KOG1824|consen 866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECA- 944 (1233)
T ss_pred cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccc-
Confidence 999999999999999998875321 123455566666666544322
Q ss_pred CCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHH
Q 002400 789 ALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIV 868 (927)
Q Consensus 789 ~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~ 868 (927)
....|.-++.|+|+++...|+. ++|.+=..+.. ++...+..+...+-..+.-. |..+.+ .+.+-+
T Consensus 945 -----eegtR~vvAECLGkL~l~epes-----LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~-p~~id~---~lk~~i 1009 (1233)
T KOG1824|consen 945 -----EEGTRNVVAECLGKLVLIEPES-----LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQ-PQPIDP---LLKQQI 1009 (1233)
T ss_pred -----hhhhHHHHHHHhhhHHhCChHH-----HHHHHHHHhcC-CCcchhhhhhheeeeeecCC-CCccCH---HHHHHH
Confidence 2345666899999999987654 56665554432 23333444444444344332 222221 122222
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCC
Q 002400 869 TIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLP 902 (927)
Q Consensus 869 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 902 (927)
.-|...++ +++.++|+.....+.....+=|
T Consensus 1010 g~fl~~~~----dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1010 GDFLKLLR----DPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred HHHHHHHh----CCchhHHHHHHHHHHHHHccCH
Confidence 23333333 5678888888888877664433
No 9
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-26 Score=241.87 Aligned_cols=770 Identities=17% Similarity=0.234 Sum_probs=451.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccc-----
Q 002400 22 FETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTR----- 95 (927)
Q Consensus 22 l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~----- 95 (927)
+.++|++..|||..++|.||++|+++++ +|+ |...|..++.+ +.+.++|.+|++.+||.|.++ |.+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPG-F~~~L~sI~l~~t~dv~vRWmAviyfKNgIdry------WR~~~~~s 73 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPG-FFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY------WRRNTKMS 73 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCc-HHHHHHHHHhccccceeeeeehhhhHhcchhHH------hhcCCccc
Confidence 5688999999999999999999999998 697 77899999888 788999999999999999999 985
Q ss_pred cCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC----ChHHHHHHHHHHHHhh
Q 002400 96 LAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF----NDKIQESALLILSRMS 171 (927)
Q Consensus 96 l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~----~~~~r~~al~~l~~l~ 171 (927)
+++|+|.+||..++..... +++.+..+.|.+++.||+.++| .+||+++|.|.+.+++. |..+.+..+.++..+.
T Consensus 74 l~~EEK~~iR~~Ll~~~~E-~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~il 151 (978)
T KOG1993|consen 74 LPPEEKDFIRCNLLLHSDE-ENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHIL 151 (978)
T ss_pred CCHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 8999999999999999995 5999999999999999999999 89999999999988775 7888899999999998
Q ss_pred hhhHH--------HHHHhHHHHHHHHHhhhCCC-------------------CHHHHHHHHHHHHHHHHhhCCCchhHHh
Q 002400 172 QFVSE--------VLIAHGDTLHEVFSKFLGSN-------------------NFDLRIAALEATVNFIMNCLPSLGEKER 224 (927)
Q Consensus 172 ~~~~~--------~l~~~~~~l~~~l~~~l~~~-------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 224 (927)
+..+. .|....+.+++++...+-++ ..++-..+++.+..++-..+.++...+
T Consensus 152 K~Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse- 230 (978)
T KOG1993|consen 152 KALATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE- 230 (978)
T ss_pred HHHHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-
Confidence 87653 12233344444332222111 123444566677766534454443222
Q ss_pred HHhhHHHHHHH----HHHHHhcCChhH--------HHHHHHHHHHHHccCc-----------------------------
Q 002400 225 FLDLLPLMMRT----LTEALNKGNESS--------AQEALELLIELAATEP----------------------------- 263 (927)
Q Consensus 225 ~~~~~p~ll~~----l~~~l~~~~~~~--------~~~a~~~l~~l~~~~~----------------------------- 263 (927)
+..=++.+++. +...+..+...+ ...-...+..+.+.+|
T Consensus 231 ~~eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~ 310 (978)
T KOG1993|consen 231 FFERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQ 310 (978)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcc
Confidence 11112222221 000010000000 0011111111111110
Q ss_pred ---------HHHHHHH---------------------------------------------HHHHHHHHH----HhhccC
Q 002400 264 ---------RFLRKQL---------------------------------------------VDVVGSMLQ----VAEAEA 285 (927)
Q Consensus 264 ---------~~~~~~l---------------------------------------------~~ll~~ll~----~~~~~~ 285 (927)
.++.+++ ..++..+.+ +.+ .
T Consensus 311 ~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~--~ 388 (978)
T KOG1993|consen 311 ISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTE--E 388 (978)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCH--H
Confidence 0000000 001111100 000 0
Q ss_pred chhhhhCC----------cch--hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc-----CCCCHHH-HHHHHHHH
Q 002400 286 VFPGFLAA----------PEW--QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-----QDPHPRV-RWAAINAI 347 (927)
Q Consensus 286 ~i~~~l~~----------~~~--~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l-----~d~~~~v-r~~a~~~l 347 (927)
-++++.+| .+| ..|-.|-..+-.+-+..+..+.+.+-+++....... +|-+..+ +.|+..+.
T Consensus 389 eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~ 468 (978)
T KOG1993|consen 389 ELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAF 468 (978)
T ss_pred HHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 11111111 235 345444444444444444444444444443333333 2223334 44555555
Q ss_pred HHhHhhhchh--HHHHhHhhHHHHHHHhccCCC-CchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC-Chh
Q 002400 348 GQLSTDLGPE--LQTQFHHRLLPALVGAMDDFQ-NPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG-KQM 423 (927)
Q Consensus 348 ~~~~~~~~~~--~~~~~~~~il~~ll~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~-~~~ 423 (927)
|.-+..+... +..=+.+.++|.+- .+.+ ...+|.+.++.++..+..--+ ...-+.+...+++++++. +..
T Consensus 469 g~~a~~l~~~~dF~~Wl~~~llpEl~---~~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~v 542 (978)
T KOG1993|consen 469 GLAAYELSNILDFDKWLQEALLPELA---NDHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLV 542 (978)
T ss_pred HHHHHHHHhcCCHHHHHHHhhCHHhh---hcccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccce
Confidence 6554444321 21112333444444 2212 345688899998888763221 223455677788888877 567
Q ss_pred HHHHHHHHHHHHHHHh---hhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHH
Q 002400 424 VQEGALTALASVADSS---QGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 500 (927)
Q Consensus 424 v~~~a~~al~~l~~~~---~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 500 (927)
||-.+..++..+++-. ++.|.||++.+...+.+++.... .-+.|...+..++.+...++ +.+.|++..+++++
T Consensus 543 V~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~---e~Dtk~~VL~~ls~lI~r~~-e~I~P~~~~ivq~l 618 (978)
T KOG1993|consen 543 VRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVE---ECDTKTSVLNLLSTLIERVS-EHIAPYASTIVQYL 618 (978)
T ss_pred eehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 7888888888887554 45799999999999999887643 33467778999999999888 77889999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccC-CCccccCCCCCCCCCCCcchhhhhccCC
Q 002400 501 MSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLK-PDVIITSADSDVDIDDEDESIQTITLGD 579 (927)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (927)
-.++... +...-++..++..+.+++..+|..-.++-+-++|.+--+...+ |+..+..
T Consensus 619 p~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~--------------------- 676 (978)
T KOG1993|consen 619 PLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLL--------------------- 676 (978)
T ss_pred HHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehh---------------------
Confidence 8888753 2334588889999999999999988777777777776666432 2211111
Q ss_pred ceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002400 580 KRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQG 659 (927)
Q Consensus 580 ~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~ 659 (927)
+.+.++++...... ..+.|-+-.++|.+.+.+.-+ ...++.++.-.+.-. .-
T Consensus 677 -------------EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~s---------te~L~t~l~Ii~sYi-----lL 728 (978)
T KOG1993|consen 677 -------------EDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQS---------TENLPTVLMIISSYI-----LL 728 (978)
T ss_pred -------------hhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHH-----hh
Confidence 22444455544433 345555566666666665542 223333332221110 01
Q ss_pred CCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhh-hHHhHHHH
Q 002400 660 RNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALK-YYDTYLPF 738 (927)
Q Consensus 660 ~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~ll~~ 738 (927)
.++.+...+...+...+...+.+=. .+.-+..+.++.-+++..+ -..+ +.+.++|.
T Consensus 729 d~~~fl~~y~~~i~k~~~~~l~dvr----------------------~egl~avLkiveili~t~~-il~~~~~~~~L~~ 785 (978)
T KOG1993|consen 729 DNTVFLNDYAFGIFKKLNDLLDDVR----------------------NEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSR 785 (978)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHH
Confidence 1345666666666665555443211 1112223333333333332 1222 55567776
Q ss_pred HHHHc--cCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC
Q 002400 739 LLEAC--NDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI 816 (927)
Q Consensus 739 l~~~l--~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~ 816 (927)
+...+ +++.|.+-..-...++++.-..++.+. .+++... ..| .
T Consensus 786 lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~m----svlqt~~---------------~~d----------------~ 830 (978)
T KOG1993|consen 786 LFLSIAENDKYPYVMGEYLLVVARISLRNPSLFM----SVLQTKN---------------TYD----------------I 830 (978)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHH----HHHHhhh---------------hHH----------------H
Confidence 66554 355665533322222222222221111 1111111 000 0
Q ss_pred CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCC-----------------
Q 002400 817 DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGK----------------- 879 (927)
Q Consensus 817 ~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~----------------- 879 (927)
.+..++..|+...+...+.+.++--.-++..++..+++.++. .++.|+++..++|+.-.
T Consensus 831 ~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila----~~~~I~nl~~e~L~eV~ed~~g~~~~~~~~d~~~ 906 (978)
T KOG1993|consen 831 LIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILA----VLDSIMNLWFEVLSEVMEDANGDATDYHLNDDLS 906 (978)
T ss_pred HHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHH----HHhHHHHHHHHHHHHHhhhccCchHHHHhhhhhh
Confidence 133455667777766666655555555666777666666655 36666666555553100
Q ss_pred ------C-----------------CCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhhc
Q 002400 880 ------D-----------------LVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILS 926 (927)
Q Consensus 880 ------~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 926 (927)
+ ..+-..|.-+...+..+....+.+-+++++.++.|+....+|.+++
T Consensus 907 e~~~~~d~tteq~~r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 907 EQGVYEDETTEQDTRHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred ccccCCchhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 0 0012357778888888888899888999999999999999998875
No 10
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.5e-26 Score=242.93 Aligned_cols=509 Identities=17% Similarity=0.249 Sum_probs=336.6
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcccccccc-
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFT- 94 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~- 94 (927)
.|.+.+.+.|.++.+||+++|+.||+.|+++..+ +. |...+++++.+ +.++.+|..|++.+||.++++ |.
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q-~~-y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~------W~~ 73 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQ-QN-YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN------WIP 73 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccC-CC-chHHHHHHHhccCcChhHHHHHHHHHHHHHHhc------cCc
Confidence 4678999999999999999999999999999884 54 88899999998 569999999999999999998 85
Q ss_pred ------ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHH
Q 002400 95 ------RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILS 168 (927)
Q Consensus 95 ------~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~ 168 (927)
++.++.++.||..++..+.+. ...++.+++++++.|+++++| +.||+|+|.|...+++.|.++-.+.+.+-+
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s-~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tah 151 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSS-PFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAH 151 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 477889999999999999975 789999999999999999999 899999999999999999988888888888
Q ss_pred HhhhhhHHH---------HHHhHH----HHHHHHHhh---hC--CCCHH---HHHHHHHHHHHHHHhhCCCchhHHhHHh
Q 002400 169 RMSQFVSEV---------LIAHGD----TLHEVFSKF---LG--SNNFD---LRIAALEATVNFIMNCLPSLGEKERFLD 227 (927)
Q Consensus 169 ~l~~~~~~~---------l~~~~~----~l~~~l~~~---l~--~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 227 (927)
.+...+... +.-.++ .+..+|.+. .+ +++.. +-...+..++.+. -.+...+-.+.|.+
T Consensus 152 siFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klf-ysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 152 SIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLF-YSLNFQDIPEFFED 230 (960)
T ss_pred HHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH-HhhhcccchHHHHh
Confidence 887664321 111111 222222222 21 11222 1112222222222 11212223356666
Q ss_pred hHHHHHHHHHHHHhcC------Ch-------hHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH---------------
Q 002400 228 LLPLMMRTLTEALNKG------NE-------SSAQEALELLIELAATEPRFLRKQLVDVVGSMLQ--------------- 279 (927)
Q Consensus 228 ~~p~ll~~l~~~l~~~------~~-------~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~--------------- 279 (927)
.+..+|..+.+.+..+ ++ +.+...||.+.-.+..-+..+.+.++.++...+.
T Consensus 231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 6666666666554311 11 1222333333222222222233333322221111
Q ss_pred ----------------------------------------------Hhhcc-----------------------------
Q 002400 280 ----------------------------------------------VAEAE----------------------------- 284 (927)
Q Consensus 280 ----------------------------------------------~~~~~----------------------------- 284 (927)
+.+|+
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~ 390 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLC 390 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHH
Confidence 11111
Q ss_pred ------------Cchhhhh----C--CcchhHHHHHHHHHHHHhhhchH---------HHHhhHHHHHHHHHhccC----
Q 002400 285 ------------AVFPGFL----A--APEWQKHHAVLIALAQIAEGCSK---------VMIKNLDQVVSMVLNSFQ---- 333 (927)
Q Consensus 285 ------------~~i~~~l----~--~~~~~~r~aal~al~~i~~~~~~---------~~~~~l~~l~~~l~~~l~---- 333 (927)
..++.++ + +.+|+.+..+++.+.+++-.... .+.+..+.+...+.+.|.
T Consensus 391 ~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v 470 (960)
T KOG1992|consen 391 KNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV 470 (960)
T ss_pred HHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence 2223333 3 46799999999988888754222 111222222333344433
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC--------CCccccCc
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC--------TPDILTPY 405 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~--------~~~~~~~~ 405 (927)
.++|.++..+.+-+-.+-..+++ .++-.++|.++..+.. ++..|-.+|+.++..+.-.. +++.+.||
T Consensus 471 n~~pilka~aIKy~~~FR~ql~~----~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~ 545 (960)
T KOG1992|consen 471 NEFPILKADAIKYIYTFRNQLGK----EHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPF 545 (960)
T ss_pred ccccchhhcccceeeeecccCCh----HHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchH
Confidence 46889999999888877776664 5677899999999998 88999999999998876432 34567889
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc-ccCcchhhHHHHHHHHHHHHHHhh
Q 002400 406 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN-ANDKSNRMLRAKSMECISLVGMAV 484 (927)
Q Consensus 406 l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~~~~lr~~a~~~l~~l~~~~ 484 (927)
...++..|+..++.+...--+..+.+|..+.....+...|+.+.+++.|.+++.. ..++.++..-...+|+++.+.+..
T Consensus 546 ~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t 625 (960)
T KOG1992|consen 546 VEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT 625 (960)
T ss_pred HHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999988776666678889999999988888889999999998888664 233445556666789999988776
Q ss_pred Ccch---hhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHH
Q 002400 485 GKDK---FRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPL 544 (927)
Q Consensus 485 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 544 (927)
++.. ...+-..+++.+..+...+. .+..+|+++.++.+....+....+....++|.+
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~l 685 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPL 685 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHh
Confidence 6332 34444455544433322211 135567777777777666554444333344433
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-26 Score=240.78 Aligned_cols=686 Identities=16% Similarity=0.207 Sum_probs=467.4
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhH-HHHHHHHHHHHHh-ccCC-----C
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSI-IKKICDAVSELAA-SVLP-----D 138 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~v-r~~~~~~i~~ia~-~~~~-----~ 138 (927)
++|+.+|..|--.|++.-..+ ..+....|-+.|.++.++.. |..++-.+-.-.. .+.. .
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~n--------------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQN--------------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred CCCcchHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 788899998888887766554 23344556666666544444 4333333321110 0100 0
Q ss_pred CCccc--------hHHHHHHHhcCCChHHHHHHHHHHHHhhhh-hHHHHHHhHHHHHHHHHhhhCCCCH-HHHHHHHHHH
Q 002400 139 GDWPE--------LIPFIFQCLVTFNDKIQESALLILSRMSQF-VSEVLIAHGDTLHEVFSKFLGSNNF-DLRIAALEAT 208 (927)
Q Consensus 139 ~~w~~--------ll~~l~~~l~s~~~~~r~~al~~l~~l~~~-~~~~l~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l 208 (927)
..|-. +=..++..+.++.+.....|..+++.++.. +|.. ..+.+++.+.....++.+ .++..++.++
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n---~wp~li~~lv~nv~~~~~~~~k~~sleal 154 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQN---QWPELIVTLVSNVGEEQASMVKESSLEAL 154 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchh---hCHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 13421 222344555667777777777787777643 2222 456777777776666633 5999999999
Q ss_pred HHHHHhhCCCchhHHhHHhhHH-----------------------------------------HHHHHHHHHHhcCChhH
Q 002400 209 VNFIMNCLPSLGEKERFLDLLP-----------------------------------------LMMRTLTEALNKGNESS 247 (927)
Q Consensus 209 ~~l~~~~~~~~~~~~~~~~~~p-----------------------------------------~ll~~l~~~l~~~~~~~ 247 (927)
+-++ +.++.+.........+- .+|+++....+++|.++
T Consensus 155 Gyic-e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i 233 (859)
T KOG1241|consen 155 GYIC-EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEI 233 (859)
T ss_pred HHHH-ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHH
Confidence 9998 66532111111111111 12222223334456677
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHH-HHHHHHHHhhcc------------------------------------------
Q 002400 248 AQEALELLIELAATEPRFLRKQLVD-VVGSMLQVAEAE------------------------------------------ 284 (927)
Q Consensus 248 ~~~a~~~l~~l~~~~~~~~~~~l~~-ll~~ll~~~~~~------------------------------------------ 284 (927)
...++.+|..|..-.-+++.+++.+ ++...+..+.++
T Consensus 234 ~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa 313 (859)
T KOG1241|consen 234 QVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFA 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH
Confidence 7778888877765544455555544 433333222110
Q ss_pred --------CchhhhhC-------CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002400 285 --------AVFPGFLA-------APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQ 349 (927)
Q Consensus 285 --------~~i~~~l~-------~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 349 (927)
|.+-+.+. +++|....||-.||.-.++.|++ ..++.++|++-..++.|+|+-|.+|..++|.
T Consensus 314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 22223332 35699999999999999999998 4456789999999999999999999999999
Q ss_pred hHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcccc-CchHHHHHHHHHHhcCCChhHHHHH
Q 002400 350 LSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILT-PYLDGIVSKLLVLLQNGKQMVQEGA 428 (927)
Q Consensus 350 ~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~l~~l~~~L~~~l~~~~~~v~~~a 428 (927)
+.+.-.+....++..+.+|.++..+.| ++-.|+..+.|+|+++++.++..... .|++.+++.++..+++ .+.+-..+
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D-~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~ 468 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSD-PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNV 468 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcC-chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHH
Confidence 998665556678899999999999999 99999999999999999998743322 3788888888888876 46788899
Q ss_pred HHHHHHHHHHhhhh---------hHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHH
Q 002400 429 LTALASVADSSQGQ---------FQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 499 (927)
Q Consensus 429 ~~al~~l~~~~~~~---------~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~ 499 (927)
++++..+++++.+. ..|||+.++..|...- +..|.....+|..|+++++.+...... ...+....+...
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~t-dr~dgnqsNLR~AAYeALmElIk~st~-~vy~~v~~~~l~ 546 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVT-DRADGNQSNLRSAAYEALMELIKNSTD-DVYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhc-cccccchhhHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHH
Confidence 99999999776542 2367777777777652 222335678999999999999988773 344443333333
Q ss_pred HHH-----HhccCCCCCC-----cchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCc
Q 002400 500 LMS-----LQGSQMEADD-----PTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDED 569 (927)
Q Consensus 500 l~~-----~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 569 (927)
++. +.....+.++ .+..-...+++.+.+.++.++.++-+.+|..+++.+.....
T Consensus 547 il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s---------------- 610 (859)
T KOG1241|consen 547 ILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRS---------------- 610 (859)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCcc----------------
Confidence 222 1111111111 24455667888889999999999999999999999965211
Q ss_pred chhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHH
Q 002400 570 ESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAK 649 (927)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~ 649 (927)
+.. -..|+-.++.++.++|..|..|++.+.|.+...+.......|-.+|+.+++++.++..
T Consensus 611 -----------------~~v--~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 611 -----------------AVV--HEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE 671 (859)
T ss_pred -----------------ccc--hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 001 1357778999999999999999999999999999776677899999999999999863
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhh
Q 002400 650 LAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAAL 729 (927)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 729 (927)
+.+..+.+.++..|++.+.++. -.-.++-..++++|||+-..|.++.
T Consensus 672 -------------~~i~py~d~~mt~Lvq~Lss~~--------------------~hR~vKP~IlS~FgDIAlaIg~~F~ 718 (859)
T KOG1241|consen 672 -------------DDILPYCDELMTVLVQCLSSPN--------------------LHRNVKPAILSVFGDIALAIGADFE 718 (859)
T ss_pred -------------hhhhhHHHHHHHHHHHHccCcc--------------------ccccccchHHHHHHHHHHHHHHhHH
Confidence 2378899999999999987753 2344566789999999999999999
Q ss_pred hhHHhHHHHHHHHcc---CC--C------hhHHhhHhHHHHHHHhhcC-----CCcHHHHHHHHHHHHHhhcCCCCCCch
Q 002400 730 KYYDTYLPFLLEACN---DK--H------PDVRQAAVYGIGVCAEFGG-----SVFKPLVGEALSRLDFVIRHPNALHSD 793 (927)
Q Consensus 730 ~~~~~ll~~l~~~l~---d~--~------~~vr~~a~~~lg~l~~~~~-----~~~~~~~~~il~~L~~~l~~~~~~~~~ 793 (927)
+|+..+++.+...-+ |+ + .++|.++..+..-+....+ ..+.||++.|++.+..+-.+++.
T Consensus 719 ~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~---- 794 (859)
T KOG1241|consen 719 PYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDV---- 794 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCccc----
Confidence 999999999887652 22 1 2588888666555554332 45789999999999988877652
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCC---CHh-hHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 002400 794 NVMAYDNAVSALGKICQFHRDSI---DAA-QVVPAWLSCLPLKGDLIEAKVVHAQLCSMV 849 (927)
Q Consensus 794 ~~~~~~na~~al~~l~~~~~~~~---~~~-~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~ 849 (927)
+..+...+++-+|-++..+|..+ ..+ .++..+|.... +......+..-+|-..-+
T Consensus 795 ~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~-k~~~~~tK~~A~wa~e~i 853 (859)
T KOG1241|consen 795 SEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGR-KSSTQKTKDLARWATEEI 853 (859)
T ss_pred chHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhh-hhhhhhhHHHHHHHHHHH
Confidence 34566678999999999888655 233 56666776654 332333333334443333
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.97 E-value=1.4e-26 Score=248.60 Aligned_cols=636 Identities=17% Similarity=0.203 Sum_probs=448.5
Q ss_pred HhcCChhHHHHHHHHH-HHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHH
Q 002400 240 LNKGNESSAQEALELL-IELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMI 318 (927)
Q Consensus 240 l~~~~~~~~~~a~~~l-~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~ 318 (927)
+++.|.+.+..|..-+ .++-+...+.-....++++..++ +.+.|.+..+..-|+.|+|-++...++
T Consensus 14 mtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lL----------klL~D~ngEVQnlAVKClg~lvsKvke--- 80 (1233)
T KOG1824|consen 14 MTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLL----------KLLEDKNGEVQNLAVKCLGPLVSKVKE--- 80 (1233)
T ss_pred ccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHH----------HHHhccCcHHHHHHHHHHHHHHhhchH---
Confidence 4466777777776433 33322211111223345566555 455577899999999999999977766
Q ss_pred hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHH----HhHhhHHHHHHHhccCC-CCchHHHHHHHHHHHh
Q 002400 319 KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQT----QFHHRLLPALVGAMDDF-QNPRVQAHAASAVLNF 393 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~~il~~ll~~l~~~-~~~~v~~~a~~al~~l 393 (927)
.++..+++.+...+-......|..+...+-.....++|.... ..+..+.|.+...+... +...++-.++..+..+
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 788899999998877778888988888888877777763322 34445555555555431 2334777777777777
Q ss_pred HhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHH
Q 002400 394 SENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKS 473 (927)
Q Consensus 394 ~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a 473 (927)
....+ +.+.++-..++..++.-+......+|..++.+||.++..++.. .+..++..|...+.+.. ....+|. .
T Consensus 161 lsr~g-~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~--q~~~~rt-~ 233 (1233)
T KOG1824|consen 161 LSRFG-TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYVELIEHLLKGLSNRT--QMSATRT-Y 233 (1233)
T ss_pred HHhhc-ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCCCC--chHHHHH-H
Confidence 77776 4566677788888888888888899999999999999888865 56667777777776642 2334554 5
Q ss_pred HHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCC
Q 002400 474 MECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPD 553 (927)
Q Consensus 474 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~ 553 (927)
+.|++.++++.| .+|..+.+.+++.+.+..+..-..+|++|++.+++++.+....+.++.||.|.++..+++.++++|+
T Consensus 234 Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 234 IQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCC
Confidence 889999999999 7899999999999888665444567789999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCC----C-CCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhccc
Q 002400 554 VIITSADSDVD----I-DDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY 628 (927)
Q Consensus 554 ~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 628 (927)
+.+.++||++. + +|++.+-+|.+.+|-.|.|| .+|.+++..++..-.+-+..+...+-|.++..+.+
T Consensus 313 y~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVR-------RaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkE- 384 (1233)
T KOG1824|consen 313 YNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVR-------RAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKE- 384 (1233)
T ss_pred CCCCCccchhhhhhhccccchhccccccccchhHHHH-------HHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHH-
Confidence 98877433221 1 11222245555556666654 45777787777665555555666677777777776
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHH---------HHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHh
Q 002400 629 FHEEVRKAAVSAMPELLRSAKLA---------VEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNES 699 (927)
Q Consensus 629 ~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~ 699 (927)
+.++||...+.+.-.+++....- .+.|+ .+.+...+.+-...++..+-+.+.+..-+ .+...+..+.+.
T Consensus 385 REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g-~~s~~~~L~~~~~~iVkai~~qlr~ks~k-t~~~cf~lL~el 462 (1233)
T KOG1824|consen 385 REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGG-TPSDLSMLSDQVPLIVKAIQKQLREKSVK-TRQGCFLLLTEL 462 (1233)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccC-CccchHHHHhhhHHHHHHHHHHHhhcccc-chhhHHHHHHHH
Confidence 47899999999888887754211 11111 01112334444444454444445433222 233333333333
Q ss_pred hc----------------------CCCCChhhHHHHHHHHH-HHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhH
Q 002400 700 IQ----------------------GKDKTAEERRIAICIFD-DVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVY 756 (927)
Q Consensus 700 ~~----------------------~~~~~~~~r~~a~~~l~-~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~ 756 (927)
+. ..+.+...+..++.++. .++.+.++.+.||.+.+.|.+..+..++.+.+-..|..
T Consensus 463 i~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~ 542 (1233)
T KOG1824|consen 463 INVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALL 542 (1233)
T ss_pred HHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHH
Confidence 32 33445666777776655 45555667788999999999999999999999888877
Q ss_pred HHHHHHhhc-------CCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHh
Q 002400 757 GIGVCAEFG-------GSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLS 827 (927)
Q Consensus 757 ~lg~l~~~~-------~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~ 827 (927)
..+.+++.. +-.+.||+..++....+.+...+ .+..||+.|++|+|.++.+.++.. .++..+|.+++
T Consensus 543 v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d----~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 543 VCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD----SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 778777652 13577888888888887776443 357899999999999999988766 58999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHH
Q 002400 828 CLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLA 907 (927)
Q Consensus 828 ~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 907 (927)
+|.. +-.+..++++++.++...-..-+.+ ++.+++..+.+++++..+....++...+-.+++.+...+|.+..+
T Consensus 619 Rl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~---~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e 692 (1233)
T KOG1824|consen 619 RLGN---EITRLTAVKALTLIAMSPLDIDLSP---VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE 692 (1233)
T ss_pred HHhc---hhHHHHHHHHHHHHHhccceeehhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 9964 3457889999998885432211233 678899999999986544444566777777888888888888888
Q ss_pred HHHhcCCHH
Q 002400 908 STWSSLQPQ 916 (927)
Q Consensus 908 ~~~~~l~~~ 916 (927)
.++..+|+=
T Consensus 693 ~vL~el~~L 701 (1233)
T KOG1824|consen 693 AVLVELPPL 701 (1233)
T ss_pred HHHHHhhhh
Confidence 888888763
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.95 E-value=5.6e-23 Score=221.21 Aligned_cols=508 Identities=18% Similarity=0.250 Sum_probs=332.7
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccc-
Q 002400 18 NPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTR- 95 (927)
Q Consensus 18 ~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~- 95 (927)
..+.+.++|.+.+|+|+++|.+||.+++++.. +++|...|.++..+ ....+.||.|.+.||+.+.+| |..
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h------W~~~ 73 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKH------WSPN 73 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh------CCCh
Confidence 46789999999999999999999999999988 44588999999988 578999999999999999999 874
Q ss_pred ---------cCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHH
Q 002400 96 ---------LAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLI 166 (927)
Q Consensus 96 ---------l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~ 166 (927)
.+.+.|..||..|++.+.. ++..+|+.++.+++.||..++| +.||+++|.+..++++.+.+..++++.+
T Consensus 74 ~E~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~v 151 (1005)
T KOG2274|consen 74 FEAFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRV 151 (1005)
T ss_pred HhhccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHH
Confidence 4678899999999999995 4999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHh-HHHHHHHHHh---hhCCCCHHHHHHHH--HHHHHHHHhhCCC------chhHHhHHhhHHHHHH
Q 002400 167 LSRMSQFVSEVLIAH-GDTLHEVFSK---FLGSNNFDLRIAAL--EATVNFIMNCLPS------LGEKERFLDLLPLMMR 234 (927)
Q Consensus 167 l~~l~~~~~~~l~~~-~~~l~~~l~~---~l~~~~~~vr~~a~--~~l~~l~~~~~~~------~~~~~~~~~~~p~ll~ 234 (927)
|..+........... .+..++.... .....+...|..++ +.+..++ ..+.+ +.....+...++.+++
T Consensus 152 L~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~-~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 152 LAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCL-TLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998775321111 1111222221 12222333343333 4444433 22211 1122345556666666
Q ss_pred HHHHHHhcCCh---hHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHh------------------------------
Q 002400 235 TLTEALNKGNE---SSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVA------------------------------ 281 (927)
Q Consensus 235 ~l~~~l~~~~~---~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~------------------------------ 281 (927)
.+...++..+. ..+...+.++..+.++-|.+..+.+...++..++..
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~ 310 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEK 310 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhh
Confidence 66655443222 222233333333333322222222222211111100
Q ss_pred ----------------------------------------------------h-------cc------------------
Q 002400 282 ----------------------------------------------------E-------AE------------------ 284 (927)
Q Consensus 282 ----------------------------------------------------~-------~~------------------ 284 (927)
. ++
T Consensus 311 ~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~ 390 (1005)
T KOG2274|consen 311 SVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVI 390 (1005)
T ss_pred ChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHH
Confidence 0 00
Q ss_pred ---------Cc-------hhh-----hhC-CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCC-CCHHHHH
Q 002400 285 ---------AV-------FPG-----FLA-APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQD-PHPRVRW 341 (927)
Q Consensus 285 ---------~~-------i~~-----~l~-~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~ 341 (927)
+. +++ .++ ...|+..++.+.+......+. .....+..++..+..++.. ..|..-.
T Consensus 391 ~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e~P~Ll~ 468 (1005)
T KOG2274|consen 391 TTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQESPFLLL 468 (1005)
T ss_pred HhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhcccccCHHHHH
Confidence 00 100 111 234777777777776665331 1224455556666666643 4676666
Q ss_pred HHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC
Q 002400 342 AAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK 421 (927)
Q Consensus 342 ~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~ 421 (927)
.++++++.+++.+... .+....++...+..+.-...+.++.+|+.++..++ +.+.+.+.++.+++.|.++....+
T Consensus 469 Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s 543 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSS 543 (1005)
T ss_pred HHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccccc
Confidence 9999999998864322 24566667777776654367788888888877666 567788999999999999999989
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHH-hHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHH
Q 002400 422 QMVQEGALTALASVADSSQGQFQK-YYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 500 (927)
Q Consensus 422 ~~v~~~a~~al~~l~~~~~~~~~~-~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 500 (927)
..+....+++++.+++.-++ |.. .-..+.|.+..++....+ ++.+-..+.+++..+.... ....|+...+++.+
T Consensus 544 ~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~--DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSE--DPQVASLAQDLFEELLQIA--ANYGPMQERLIPSL 618 (1005)
T ss_pred HHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHH
Confidence 99999999999988865443 332 334566777777665443 3466666777777777643 45777888888888
Q ss_pred HHHhccCC-CCCCcchHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHc
Q 002400 501 MSLQGSQM-EADDPTTSYMLQAWARLCKCLGQEFIP-YMSVVMPPLLQSA 548 (927)
Q Consensus 501 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~i~~~ll~~l 548 (927)
+++.+... .........++..+..+.+.-+..+.. .+..++|.+.+..
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 87544321 111235556666777777776666533 3345566666665
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=9.6e-22 Score=200.56 Aligned_cols=599 Identities=16% Similarity=0.206 Sum_probs=386.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHhc----CCChhHHHHHHHHHHhhcccCccccccccccCHhH
Q 002400 26 ISNLMSSSNEHRSHAEVLLSHLRQS-HPDAFALNLSRMLSS----SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPST 100 (927)
Q Consensus 26 L~~~~s~d~~~r~~Ae~~l~~~~~~-~p~~~~~~L~~il~~----~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~ 100 (927)
|+++.||.+..-..|-+.+..+..- -|.+.-+.|...+.. .++....+.+...+.....+. +|+.
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~----------~Pe~ 169 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE----------APED 169 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc----------CHHH
Confidence 4555566555555555555443221 122212333333321 344445555555544444332 3322
Q ss_pred HHH-----HHHHHHHHHhhcchhhHHHHHHHHHHH---HHhccCC-CCCccchHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 002400 101 QAN-----LKSVLLVQLQNETNKSIIKKICDAVSE---LAASVLP-DGDWPELIPFIFQCLVTFNDKIQESALLILSRMS 171 (927)
Q Consensus 101 ~~~-----ik~~Ll~~l~~~~~~~vr~~~~~~i~~---ia~~~~~-~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~ 171 (927)
.-+ +.......++.+++..+|-.+-.++.. ..+..+. +++-+-++....+..++++..+...++.||..+.
T Consensus 170 li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim 249 (858)
T COG5215 170 LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249 (858)
T ss_pred HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHH
Confidence 222 223333455667788888877666654 1111111 1344556777778889999999999999999999
Q ss_pred hhhHHHHHHhHHH-HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch---------------hHHhHHhhHHHHHHH
Q 002400 172 QFVSEVLIAHGDT-LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG---------------EKERFLDLLPLMMRT 235 (927)
Q Consensus 172 ~~~~~~l~~~~~~-l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~---------------~~~~~~~~~p~ll~~ 235 (927)
..+.+.+.+++++ +..+..+.+.+++.+|...|++.|..++.+.++..- .+....+.+|.+++.
T Consensus 250 ~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~L 329 (858)
T COG5215 250 MLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSL 329 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHH
Confidence 9888888888875 566667788999999999999999887733332100 123345677777777
Q ss_pred HHHHHhc---CChhH---HHHHHHHHHHHHccCcHHHHHHH----------------------------------HHHHH
Q 002400 236 LTEALNK---GNESS---AQEALELLIELAATEPRFLRKQL----------------------------------VDVVG 275 (927)
Q Consensus 236 l~~~l~~---~~~~~---~~~a~~~l~~l~~~~~~~~~~~l----------------------------------~~ll~ 275 (927)
+.+-=++ +++.. +..+++.+.+++++. +++|.+ ..++|
T Consensus 330 L~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~ 407 (858)
T COG5215 330 LEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP 407 (858)
T ss_pred HHhcCCCccccccchhhhHHHHHHHHHHHhhhH--hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH
Confidence 7642111 12322 344555555554331 222211 11111
Q ss_pred HHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHH--hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhh
Q 002400 276 SMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMI--KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 276 ~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~--~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 353 (927)
..+ |-+...++|+.-.++..+.+++|.+++.....+. .|+...+...+.++.| +|++--.++|....+..+
T Consensus 408 qal------p~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 408 QAL------PGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDH 480 (858)
T ss_pred hhh------HHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHh
Confidence 111 3333555667767888899999999999887665 4677888888889988 888888999999988888
Q ss_pred hchh------HHHHhHhhHHHHHHHhcc--CCCCchHHHHHHHHHHHhHhcCC---------------------------
Q 002400 354 LGPE------LQTQFHHRLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCT--------------------------- 398 (927)
Q Consensus 354 ~~~~------~~~~~~~~il~~ll~~l~--~~~~~~v~~~a~~al~~l~~~~~--------------------------- 398 (927)
+.+. +..+++..++..|++.-+ + ++...|.++.++|+.++..++
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~-Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q 559 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKGTELAL-NESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ 559 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7543 234566667777765432 3 456788888999988887665
Q ss_pred ----------------------------CccccCchHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhhhhhHHhHHH
Q 002400 399 ----------------------------PDILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQGQFQKYYDA 449 (927)
Q Consensus 399 ----------------------------~~~~~~~l~~l~~~L~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~ 449 (927)
...+++.-+.++..+++.+++. +..+-...+.+|+.+....++.|..|.+.
T Consensus 560 ~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~ 639 (858)
T COG5215 560 ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK 639 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1234455566888888888877 45677889999999999999999999999
Q ss_pred HHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHh
Q 002400 450 VMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCL 529 (927)
Q Consensus 450 i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (927)
++|+|...+.. .+..+...|+..+|.+++++| ..|.+|++.+|+.+.+..++. ..++.+++.++++|++|+..+
T Consensus 640 fiPyl~~aln~----~d~~v~~~avglvgdlantl~-~df~~y~d~~ms~LvQ~lss~-~~~R~lKPaiLSvFgDIAlai 713 (858)
T COG5215 640 FIPYLTRALNC----TDRFVLNSAVGLVGDLANTLG-TDFNIYADVLMSSLVQCLSSE-ATHRDLKPAILSVFGDIALAI 713 (858)
T ss_pred hhHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCh-hhccccchHHHHHHHHHHHHH
Confidence 99999999843 456677889999999999999 789999999999999865543 245679999999999999999
Q ss_pred ccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhc--
Q 002400 530 GQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELK-- 607 (927)
Q Consensus 530 ~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~-- 607 (927)
|.+|.+||+.||-.+.+.-+.+|.-. .-.-.+|+ .++ .......+..+....+
T Consensus 714 ga~F~~YL~~im~L~qqas~~~p~~~------------~~~~~dy~------~~~-------~~~v~~ayVgI~~~~~nr 768 (858)
T COG5215 714 GANFESYLDMIMMLFQQASELDPHSD------------EVYVDDYR------KNA-------VQLVNCAYVGIGDSSKNR 768 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCC------------ceeHHHHH------HHH-------HHHHHHHHHHhhhhhhhh
Confidence 99999999999988877776654210 00111111 011 1112222333333333
Q ss_pred -ccccccHHHHHHHHhhhhcccC-cHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHH
Q 002400 608 -EGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSAKLAVEKGQ-SQGRNESYVKQLTDYIIPALVEA 679 (927)
Q Consensus 608 -~~~~~~~~~~~~~l~~~l~~~~-~~~vR~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~il~~ll~~ 679 (927)
..+.||+..++..+-....|+. ++..-++|..+++++..... +|. ..+-+.+.++.++.....++...
T Consensus 769 ~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfp----kgelk~~~~~dWv~d~l~~~~~ki~sq 839 (858)
T COG5215 769 VRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFP----KGELKFGLDEDWVKDFLYGMMKKISSQ 839 (858)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCC----CcchhhccchHHHHHHHHHHHHHhhhh
Confidence 4688999988887765555532 35556788999999976542 121 01223345566665555544443
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-17 Score=176.22 Aligned_cols=402 Identities=13% Similarity=0.178 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccc--
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTR-- 95 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~-- 95 (927)
.+++.+++.++++.|..+|+.||+.|+++++ +|+ |+..+++++.. ..++.+|+.|+++|||.|.+. |+.
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs------Wss~~ 73 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS------WSSKR 73 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh------hhhcc
Confidence 4688999999999999999999999999999 597 89999999987 589999999999999999998 987
Q ss_pred ---cCHhHHHHHHHHHHHH----HhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHH
Q 002400 96 ---LAPSTQANLKSVLLVQ----LQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILS 168 (927)
Q Consensus 96 ---l~~~~~~~ik~~Ll~~----l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~ 168 (927)
++++.+..+|..|++. +... +...|...-.++..|...++|.+.|+ +.|...+++.+.+..+...|+.|+.
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~s-p~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~ 151 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLYS-PEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLE 151 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHH
Confidence 3344555555555554 4432 55667788888888899999989999 9999999999999999999999999
Q ss_pred HhhhhhHH-------HHHHhHHHHHHHHHhh---hCC-C---CHHHHHHHHHHHH-------------------------
Q 002400 169 RMSQFVSE-------VLIAHGDTLHEVFSKF---LGS-N---NFDLRIAALEATV------------------------- 209 (927)
Q Consensus 169 ~l~~~~~~-------~l~~~~~~l~~~l~~~---l~~-~---~~~vr~~a~~~l~------------------------- 209 (927)
++++...= .+.+....+.|.+.+. +.+ . +.++..-.++..-
T Consensus 152 elfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l 231 (970)
T COG5656 152 ELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSL 231 (970)
T ss_pred HHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHH
Confidence 99976431 1222233333333322 111 1 1222222222111
Q ss_pred ------------------------------------HHHHhhCCCch------hHHhHHhhHHHHHHHHHHHHhc---CC
Q 002400 210 ------------------------------------NFIMNCLPSLG------EKERFLDLLPLMMRTLTEALNK---GN 244 (927)
Q Consensus 210 ------------------------------------~l~~~~~~~~~------~~~~~~~~~p~ll~~l~~~l~~---~~ 244 (927)
.+++++..... ....|...+|.+++...+.++. +.
T Consensus 232 ~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgq 311 (970)
T COG5656 232 RILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQ 311 (970)
T ss_pred HHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 11100000000 0011223455555555444321 11
Q ss_pred ---hhHHHHHHHHHHHHHcc---CcHHHHHHHHHHHHHHH-----------HHhhcc--CchhhhhC--CcchhHHHHHH
Q 002400 245 ---ESSAQEALELLIELAAT---EPRFLRKQLVDVVGSML-----------QVAEAE--AVFPGFLA--APEWQKHHAVL 303 (927)
Q Consensus 245 ---~~~~~~a~~~l~~l~~~---~~~~~~~~l~~ll~~ll-----------~~~~~~--~~i~~~l~--~~~~~~r~aal 303 (927)
.+.....+.++.+.|-. ..++++||+.-++...+ +..+++ +++.+++. +.-..---||+
T Consensus 312 LWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal 391 (970)
T COG5656 312 LWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAAL 391 (970)
T ss_pred eecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHH
Confidence 12223333444444322 24567788776655432 122332 34544442 11122223455
Q ss_pred HHHHHHhhhchHHHHhhHHHHHHHHHhcc-----CC---CCHHHHHHHHHHHHHhHhhhch--hHHHHhHhhHHHHHHHh
Q 002400 304 IALAQIAEGCSKVMIKNLDQVVSMVLNSF-----QD---PHPRVRWAAINAIGQLSTDLGP--ELQTQFHHRLLPALVGA 373 (927)
Q Consensus 304 ~al~~i~~~~~~~~~~~l~~l~~~l~~~l-----~d---~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~il~~ll~~ 373 (927)
..+-.+....++ ..+..+++++..-| .+ .+++-.+.|+..++.+...+.. .....+-.-+++.++..
T Consensus 392 ~fl~~~~sKrke---~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 392 FFLIISKSKRKE---ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHhcccch---hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 555444444443 23444444444333 22 3567778888888888773321 12122334467778888
Q ss_pred ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 374 MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
+.+ +..-.+.+||..+..+-+..+.. ..+..+.+...+++++.+..|+-.|..|+..+..
T Consensus 469 f~s-~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 469 FRS-NYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred hcC-cccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 888 88899999999999996666532 3466777888888888777787777777766653
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=3.6e-18 Score=179.57 Aligned_cols=689 Identities=16% Similarity=0.204 Sum_probs=425.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcccccccc----
Q 002400 21 HFETLISNLMSSSNEHRSHAEVLLSHL-RQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFT---- 94 (927)
Q Consensus 21 ~l~~~L~~~~s~d~~~r~~Ae~~l~~~-~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~---- 94 (927)
.+..+|-...++.+.-|+.|-.+|..= .+.-++.....++-++.+ +-+++-|+.-.-++-+.+.+-|.....|-
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 455666677788888999999888753 222222233455555555 66777888776666666554321000010
Q ss_pred ------ccCHhHHH-----HHHHHHHH-----HHhh-------cchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHH
Q 002400 95 ------RLAPSTQA-----NLKSVLLV-----QLQN-------ETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQC 151 (927)
Q Consensus 95 ------~l~~~~~~-----~ik~~Ll~-----~l~~-------~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~ 151 (927)
.++++... +|..+|.. .+.+ ..++-||+..+.+++.+|.... .|+++|+|-..
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalg----ip~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----IPALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHH
Confidence 02222221 12222222 1111 1478899999999999998764 48999999999
Q ss_pred hcCC-ChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHH
Q 002400 152 LVTF-NDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLP 230 (927)
Q Consensus 152 l~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p 230 (927)
+.|. +...|+.++.+...++...+-...+|+..++..+.+++.|.+..||.-+..++..++ +... +-..+.|.+.+.
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsala-eaa~-Pygie~fDsVlk 597 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALA-EAAT-PYGIEQFDSVLK 597 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHH-HhcC-CcchHHHHHHHH
Confidence 9887 889999999999999999998888999999999999999999999999999999888 4331 111122222222
Q ss_pred HHH---------------HH-----------------------HHHHHhcCChhHHHHHHHHHHHHHcc---CcHHHHHH
Q 002400 231 LMM---------------RT-----------------------LTEALNKGNESSAQEALELLIELAAT---EPRFLRKQ 269 (927)
Q Consensus 231 ~ll---------------~~-----------------------l~~~l~~~~~~~~~~a~~~l~~l~~~---~~~~~~~~ 269 (927)
.+- +. +..-..++|++..+-.+.++..+|.. +|.+++
T Consensus 598 pLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r-- 675 (1172)
T KOG0213|consen 598 PLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR-- 675 (1172)
T ss_pred HHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--
Confidence 111 11 11112234444444444444444432 223322
Q ss_pred HHHHHHHHHHHhhccCchhhhhCCcchhHHHHH--------HHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHH
Q 002400 270 LVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV--------LIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRW 341 (927)
Q Consensus 270 l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa--------l~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~ 341 (927)
..++|.++ . .-|..|.|. ...-..++... --..++..++..+.|.++..|.
T Consensus 676 -~dilp~ff-------------~-~fw~rrmA~drr~ykqlv~ttv~ia~Kv------G~~~~v~R~v~~lkde~e~yrk 734 (1172)
T KOG0213|consen 676 -FDILPEFF-------------F-SFWGRRMALDRRNYKQLVDTTVEIAAKV------GSDPIVSRVVLDLKDEPEQYRK 734 (1172)
T ss_pred -hhhhHHHH-------------h-hhhhhhhhccccchhhHHHHHHHHHHHh------CchHHHHHHhhhhccccHHHHH
Confidence 12222221 1 124333332 11111222211 1235677778889999999999
Q ss_pred HHHHHHHHhHhhhch-hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC
Q 002400 342 AAINAIGQLSTDLGP-ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG 420 (927)
Q Consensus 342 ~a~~~l~~~~~~~~~-~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~ 420 (927)
....++.++...++. ++....-..++..++..++. +...+. .....++.++..++.. ++||++.|+...+..|++.
T Consensus 735 m~~etv~ri~~~lg~~diderleE~lidgil~Afqe-qtt~d~-vml~gfg~V~~~lg~r-~kpylpqi~stiL~rLnnk 811 (1172)
T KOG0213|consen 735 MVAETVSRIVGRLGAADIDERLEERLIDGILYAFQE-QTTEDS-VMLLGFGTVVNALGGR-VKPYLPQICSTILWRLNNK 811 (1172)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHh-cccchh-hhhhhHHHHHHHHhhc-cccchHHHHHHHHHHhcCC
Confidence 999999998887753 23334556677777777776 333332 3456677777777643 6899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHH
Q 002400 421 KQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 500 (927)
Q Consensus 421 ~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 500 (927)
++.+|.++...+++++...+.. .-...+..+-..|-..-+.+...+-+..+.++..|...+|-.+..|-+..+++.+
T Consensus 812 sa~vRqqaadlis~la~Vlktc---~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrl 888 (1172)
T KOG0213|consen 812 SAKVRQQAADLISSLAKVLKTC---GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRL 888 (1172)
T ss_pred ChhHHHHHHHHHHHHHHHHHhc---cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccc
Confidence 9999999999999998766542 1112222332222222233566666667777777777777555555555555555
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCc
Q 002400 501 MSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDK 580 (927)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (927)
..+..+ ..+.+.+..+..++.||.
T Consensus 889 tPILkn---rheKVqen~IdLvg~Iad----------------------------------------------------- 912 (1172)
T KOG0213|consen 889 TPILKN---RHEKVQENCIDLVGTIAD----------------------------------------------------- 912 (1172)
T ss_pred hHhhhh---hHHHHHHHHHHHHHHHHh-----------------------------------------------------
Confidence 443322 112233344444444443
Q ss_pred eeeechhhHHhHHHHHHHHHHHHHHhccc--ccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002400 581 RIGIKTSVLEEKATACNMLCCYADELKEG--FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQ 658 (927)
Q Consensus 581 ~~~~~~~~~~~k~~a~~~l~~l~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~ 658 (927)
.-+.- -..++.-++. ++.++.. -+.++|++|..+++.+.++.+
T Consensus 913 ------------------------rgpE~v~aREWMRIcfe-LlelLka-hkK~iRRaa~nTfG~IakaIG--------- 957 (1172)
T KOG0213|consen 913 ------------------------RGPEYVSAREWMRICFE-LLELLKA-HKKEIRRAAVNTFGYIAKAIG--------- 957 (1172)
T ss_pred ------------------------cCcccCCHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhhhhHHHHhcC---------
Confidence 22210 0112222222 2222332 267999999999999988752
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHH
Q 002400 659 GRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPF 738 (927)
Q Consensus 659 ~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~ 738 (927)
.+ .++..|+..++.++ -..|...--.++-+++.||+. .++|.
T Consensus 958 ------Pq----dVLatLlnnLkvqe----------------------Rq~RvcTtvaIaIVaE~c~pF------tVLPa 999 (1172)
T KOG0213|consen 958 ------PQ----DVLATLLNNLKVQE----------------------RQNRVCTTVAIAIVAETCGPF------TVLPA 999 (1172)
T ss_pred ------HH----HHHHHHHhcchHHH----------------------HHhchhhhhhhhhhhhhcCch------hhhHH
Confidence 12 34444455444321 233444444577777788763 68899
Q ss_pred HHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCC-
Q 002400 739 LLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSID- 817 (927)
Q Consensus 739 l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~- 817 (927)
+++.-+.++..|.+....++..+.+..|+.-+.|+..+.+.|...+.|.+ ..-|..|++++..|....++...
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD------~vhRqta~~~I~Hl~Lg~~g~g~e 1073 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRD------LVHRQTAMNVIKHLALGVPGTGCE 1073 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcccc------HHHHHHHHHHHHHHhcCCCCcCcH
Confidence 99999999999999999999999999999999999999999999998764 45677888999998887766543
Q ss_pred ------HhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 002400 818 ------AAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMI 891 (927)
Q Consensus 818 ------~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 891 (927)
+.-++|.+++.-| .++..+..-++.. ..++| ...+++.+.+.|-++ +..+|....
T Consensus 1074 da~iHLLN~iWpNIle~sP---------hviqa~~e~~eg~-r~~Lg-----~~~~~~Y~~QGLFHP----arkVR~~yw 1134 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSP---------HVIQAFDEAMEGL-RVALG-----PQAMLKYCLQGLFHP----ARKVRKRYW 1134 (1172)
T ss_pred HHHHHHHHHhhhhhcCCCh---------HHHHHHHHHHHHH-HHHhc-----hHHHHHHHHHhccCc----HHHHHHHHH
Confidence 3334455544444 2333332222211 22344 336677777777543 567888887
Q ss_pred HHHHHHH
Q 002400 892 NLLRQLQ 898 (927)
Q Consensus 892 ~~l~~~~ 898 (927)
.++..+.
T Consensus 1135 ~vyn~my 1141 (1172)
T KOG0213|consen 1135 TVYNSMY 1141 (1172)
T ss_pred HHHHhHh
Confidence 7776654
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.8e-18 Score=181.76 Aligned_cols=685 Identities=14% Similarity=0.164 Sum_probs=429.2
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS 195 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~ 195 (927)
..+..|...-..+..=++...+..-++.++|.+++. +-+...|+.-..++..+...+.+...+|+..++-++...+-|
T Consensus 375 G~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~--tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllid 452 (1172)
T KOG0213|consen 375 GTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSP--TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLID 452 (1172)
T ss_pred CCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCc--cccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceec
Confidence 577788888888877776554422334444444332 123456777778888887777776677888777777777888
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 002400 196 NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVG 275 (927)
Q Consensus 196 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~ 275 (927)
++...|...-+.+.+++ ... -+..++..+..-+.+.|+-++...-..+..+++. --++.++|
T Consensus 453 ed~yar~egreIisnLa-kaa-----------Gla~mistmrpDidn~deYVRnttarafavvasa------lgip~llp 514 (1172)
T KOG0213|consen 453 EDYYARVEGREIISNLA-KAA-----------GLATMISTMRPDIDNKDEYVRNTTARAFAVVASA------LGIPALLP 514 (1172)
T ss_pred chHHHhhchHHHHHHHH-HHh-----------hhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHH------hCcHHHHH
Confidence 88888888888888777 211 2233344444333344554444333333322221 01345666
Q ss_pred HHHHHhhccCchhhhhCC-cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 276 SMLQVAEAEAVFPGFLAA-PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 276 ~ll~~~~~~~~i~~~l~~-~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
++-.+ ..+ .+|+.|+.++.+..+|+.-.+-.+.+|+..++..+-.+|.|.+..||-.++.+++.+++..
T Consensus 515 fLkav----------c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 515 FLKAV----------CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred HHHHH----------hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 55433 334 5899999999999999987666678999999999999999999999999999999999988
Q ss_pred chhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 355 ~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
+|.- ...++.++..|-+.+.. .....-.+-..|++.++..+..+.-.-|-..+|-.+.+-+++++...+.-.+..+..
T Consensus 585 ~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~q 662 (1172)
T KOG0213|consen 585 TPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQ 662 (1172)
T ss_pred CCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 7654 36677888888888876 444454566678888877776554334566788888888899999999998888888
Q ss_pred HHHHhhhhhH-HhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCc
Q 002400 435 VADSSQGQFQ-KYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDP 513 (927)
Q Consensus 435 l~~~~~~~~~-~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 513 (927)
.+...|-+-. .+.+.+-.++...|.....- ++..-.+..++-..++..+|.. .+++..+.- -.++.++
T Consensus 663 cc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~-drr~ykqlv~ttv~ia~KvG~~-------~~v~R~v~~---lkde~e~ 731 (1172)
T KOG0213|consen 663 CCATDGVEPAYIRFDILPEFFFSFWGRRMAL-DRRNYKQLVDTTVEIAAKVGSD-------PIVSRVVLD---LKDEPEQ 731 (1172)
T ss_pred HhcccCCCHHHHhhhhhHHHHhhhhhhhhhc-cccchhhHHHHHHHHHHHhCch-------HHHHHHhhh---hccccHH
Confidence 8766664311 23344444445555442221 2222334577788888888842 233332221 1122345
Q ss_pred chHHHHHHHHHHHHHhcc-ccccch-hhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHh
Q 002400 514 TTSYMLQAWARLCKCLGQ-EFIPYM-SVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEE 591 (927)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~-~~~~~l-~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (927)
.|.-......++...+|. +|..-+ ..++..++.+++.+.. ++
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt---------------~d--------------------- 775 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT---------------ED--------------------- 775 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc---------------ch---------------------
Confidence 666677777777766653 343322 3344555555533210 00
Q ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 002400 592 KATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDY 671 (927)
Q Consensus 592 k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (927)
..-+..++.++..++....||++++...++..+.+. ++.||+.|+.+++.+....+..- -.++...
T Consensus 776 -~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~------------ee~~m~~ 841 (1172)
T KOG0213|consen 776 -SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCG------------EEKLMGH 841 (1172)
T ss_pred -hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhcc------------HHHHHHH
Confidence 012345888889999999999999999999999985 89999999999999877654321 1223333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhhc---------------------CCCCChhhHHHHHHHHHHHHHHhhhhhhh
Q 002400 672 IIPALVEALHKEPEIDICASMLDALNESIQ---------------------GKDKTAEERRIAICIFDDVMEHCREAALK 730 (927)
Q Consensus 672 il~~ll~~l~~e~d~~v~~~~l~~l~~~~~---------------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 730 (927)
+-..|.+.+ .+.++++...++.++..+.. +.+....+...++..+|.++...++.+..
T Consensus 842 lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 842 LGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred hhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 333344444 34467888877777766554 34445556677788888888877664432
Q ss_pred --hHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCC-CcHHHH----------------------------HHHHHH
Q 002400 731 --YYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGS-VFKPLV----------------------------GEALSR 779 (927)
Q Consensus 731 --~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~-~~~~~~----------------------------~~il~~ 779 (927)
|. .+.-.|+..+...+..+|++|...+|.+++..|. ++...+ -.+|+.
T Consensus 921 REWM-RIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPa 999 (1172)
T KOG0213|consen 921 REWM-RICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPA 999 (1172)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHH
Confidence 33 3444566667777778888888888888876542 111000 123333
Q ss_pred HHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCccc
Q 002400 780 LDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEIL 857 (927)
Q Consensus 780 L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~ 857 (927)
|.+-...| +..|...+..+++-+..+-++.. .+-.+.|.+-++|-. .|..-+..+...+-.+.-. ...+
T Consensus 1000 lmneYrtP------e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD-rD~vhRqta~~~I~Hl~Lg--~~g~ 1070 (1172)
T KOG0213|consen 1000 LMNEYRTP------EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVIKHLALG--VPGT 1070 (1172)
T ss_pred HHhhccCc------hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHHHHHhcC--CCCc
Confidence 33322222 34466667777777776654432 344566766666643 4555555665555555532 2233
Q ss_pred CCCCCChhHHHHH----HHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhh-HHHHHhcC
Q 002400 858 GPNHQYLPKIVTI----FAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPST-LASTWSSL 913 (927)
Q Consensus 858 ~~~~~~~~~i~~~----~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l 913 (927)
+ ..+-++.+ +..++ ..++...+++...+.++.....+.. ++-.|+.|
T Consensus 1071 g----~eda~iHLLN~iWpNIl-----e~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1071 G----CEDALIHLLNLIWPNIL-----ETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGL 1122 (1172)
T ss_pred C----cHHHHHHHHHHhhhhhc-----CCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence 3 23333332 23333 4568889999999999988876443 44555666
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=4.5e-17 Score=197.23 Aligned_cols=783 Identities=15% Similarity=0.135 Sum_probs=478.8
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhhChh---------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCc
Q 002400 19 PAHFETLISNLMSS--SNEHRSHAEVLLSHLRQSHPD---------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDD 87 (927)
Q Consensus 19 ~~~l~~~L~~~~s~--d~~~r~~Ae~~l~~~~~~~p~---------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~ 87 (927)
...+..+++.+.++ +.+.|++|-..|..+.+.+++ +.++.|+..|. +.++.+|..|+-.|.+.-...+
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCHH
Confidence 45788888898866 778899998888887765543 14566777876 5678888888866666543210
Q ss_pred cccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCc------cchHHHHHHHhcCCC---hH
Q 002400 88 STSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDW------PELIPFIFQCLVTFN---DK 158 (927)
Q Consensus 88 ~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w------~~ll~~l~~~l~s~~---~~ 158 (927)
.-..+ .....-..|+..|.+. +...|..++.++..++.....+..| +..+|.|+.++++.+ ..
T Consensus 91 ----nk~~I---v~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 91 ----LRVKV---LLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred ----HHHHH---HHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 00000 0123345678888765 8889999999999998753211122 678899999988763 33
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHH
Q 002400 159 IQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRT 235 (927)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~ 235 (927)
+++.++.+|..++..-...-..-+ ...+|.+...+.++++.++..|+.++..++ ...++ ....+ ...+|.+++.
T Consensus 163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La-ss~ee--~~~aVIeaGaVP~LV~L 239 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM-MAFES--SISKVLDAGAVKQLLKL 239 (2102)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCChH--HHHHHHHCCCHHHHHHH
Confidence 556677888888876543322111 247888888888889999999999888877 43221 11111 2345655555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCC-cchhHHHHHHHHHHHHhhhc
Q 002400 236 LTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAA-PEWQKHHAVLIALAQIAEGC 313 (927)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~-~~~~~r~aal~al~~i~~~~ 313 (927)
+.. ..+..++..|...+..++...+..-+.... ..+|.+++++..+ -.+.+++ .+...++.|+++|+.++.+.
T Consensus 240 L~s---g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp--~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 240 LGQ---GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAP--SKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred Hcc---CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCc--chhhhccccchHHHHHHHHHHHHHhCCc
Confidence 532 234577888999999998764433222111 2344454333211 0012222 22445889999999999875
Q ss_pred hHHHHhhHHHHHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhHHH-HhH--hhHHHHHHHhccCCCCch-HHHHHHH
Q 002400 314 SKVMIKNLDQVVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPELQT-QFH--HRLLPALVGAMDDFQNPR-VQAHAAS 388 (927)
Q Consensus 314 ~~~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~-~~~--~~il~~ll~~l~~~~~~~-v~~~a~~ 388 (927)
..+++.+...+++. +..+...++|++..+...+...... ..+ ..+.+.|.+.+.+ +++. +++.+..
T Consensus 315 --------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~-k~p~~vqe~V~e 385 (2102)
T PLN03200 315 --------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKP-RDTKLVQERIIE 385 (2102)
T ss_pred --------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCC-CCCchhHHHHHH
Confidence 34677777666554 4455667788888775544322111 111 2466889999988 5554 5788888
Q ss_pred HHHHhHhcCCC-ccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHHHHHHhcccCcch
Q 002400 389 AVLNFSENCTP-DILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY-DAVMPYLKAILVNANDKSN 466 (927)
Q Consensus 389 al~~l~~~~~~-~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~ 466 (927)
+|..+..+..- ..+ +-.+..+.|+.++...+..+++.++++|..++....+...-.. ...+|.|...|.. .+
T Consensus 386 ALasl~gN~~l~~~L--~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s 459 (2102)
T PLN03200 386 ALASLYGNAYLSRKL--NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SS 459 (2102)
T ss_pred HHHHhcCChHHHHHH--HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CC
Confidence 87664433210 001 1124456688888888999999999999999865443222222 2357888888875 23
Q ss_pred hhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 002400 467 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYM--SVVMPPL 544 (927)
Q Consensus 467 ~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~i~~~l 544 (927)
...+..+..+++.++......+..-.-...++.+.++... .+..++..+..++++++.. .++....+ ..++|.+
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s---~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET---GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHH
Confidence 4677778888888864322111110112345555555443 2345777777788888863 33333334 2578888
Q ss_pred HHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhh
Q 002400 545 LQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 624 (927)
Q Consensus 545 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~ 624 (927)
++.+.... .+.+..|+.+|..+...-.. +.++.+..+
T Consensus 536 V~LL~sgd------------------------------------~~~q~~Aa~AL~nLi~~~d~-------~~I~~Lv~L 572 (2102)
T PLN03200 536 LWLLKNGG------------------------------------PKGQEIAAKTLTKLVRTADA-------ATISQLTAL 572 (2102)
T ss_pred HHHHhCCC------------------------------------HHHHHHHHHHHHHHHhccch-------hHHHHHHHH
Confidence 88885320 12356678888887654322 223445555
Q ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH--HHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhc-
Q 002400 625 LKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQ--LTDYIIPALVEALHKEPEIDICASMLDALNESIQ- 701 (927)
Q Consensus 625 l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~- 701 (927)
+... +..++..+..+++.++...... +.... ..+..++.|.+.+..++ ..+.......+..++.
T Consensus 573 Llsd-d~~~~~~aL~vLgnIlsl~~~~-----------d~~~~g~~~~ggL~~Lv~LL~sgs-~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 573 LLGD-LPESKVHVLDVLGHVLSVASLE-----------DLVREGSAANDALRTLIQLLSSSK-EETQEKAASVLADIFSS 639 (2102)
T ss_pred hcCC-ChhHHHHHHHHHHHHHhhcchh-----------HHHHHhhhccccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence 5543 6788888999998887643210 00111 12346677777776654 3344434333333322
Q ss_pred --------------------CCCCChhhHHHHHHHHHHHHHHhhhh-hhhhHH-hHHHHHHHHccCCChhHHhhHhHHHH
Q 002400 702 --------------------GKDKTAEERRIAICIFDDVMEHCREA-ALKYYD-TYLPFLLEACNDKHPDVRQAAVYGIG 759 (927)
Q Consensus 702 --------------------~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~-~ll~~l~~~l~d~~~~vr~~a~~~lg 759 (927)
..+.+...+..+..+|+.+....... ...+.. ..+|+|++.+.+++..++..|+.+|+
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44566778888999999998744322 122333 58999999999999999999999999
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC------CHhhHHHHHHhcCCCC-
Q 002400 760 VCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI------DAAQVVPAWLSCLPLK- 832 (927)
Q Consensus 760 ~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~------~~~~~l~~~l~~Lp~~- 832 (927)
.+++.+.....-.-...++.|..++... +...|++|+.++..++..++..- .-.-.+..+++.|.-.
T Consensus 720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G------~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 720 NLLSDPEVAAEALAEDIILPLTRVLREG------TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HHHcCchHHHHHHhcCcHHHHHHHHHhC------ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 9998764221112245678888888654 35589999999999999876321 1122345566666432
Q ss_pred CcHHHHHHHHHHHHHHHhccCCcccC--CCC--CChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCCh
Q 002400 833 GDLIEAKVVHAQLCSMVERSDGEILG--PNH--QYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPP 903 (927)
Q Consensus 833 ~d~~e~~~~~~~l~~l~~~~~~~~~~--~~~--~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 903 (927)
.+......++..|..+.+.....-.. +++ -..|.-+.-+.+++.. ..+....+.+++|..+++.-|.
T Consensus 794 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~----~~p~~~~kai~il~~~~~~~~~ 864 (2102)
T PLN03200 794 LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE----GHPLVQDKAIEILSRLCRDQPV 864 (2102)
T ss_pred cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc----CChHHHHHHHHHHHHHhccChh
Confidence 12223334778887777642221111 100 0122334445555543 3678999999999999987663
No 19
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=3.1e-18 Score=194.36 Aligned_cols=576 Identities=17% Similarity=0.210 Sum_probs=378.7
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVSE--VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~--~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
+...+...+.|+++..|.+++.-|-.+..+++. ....+.+.+...|...|.|.++-++..|.+.++-+. +.- ++
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVY-elg-d~-- 894 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVY-ELG-DS-- 894 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEE-ecC-Cc--
Confidence 444556677899999999999988888888774 344567888899999999998888888888877655 321 11
Q ss_pred HHhHHhhHHHHHHHHHHHHh-----cCChhHH-------------HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhc
Q 002400 222 KERFLDLLPLMMRTLTEALN-----KGNESSA-------------QEALELLIELAATEPRFLRKQLVDVVGSMLQVAEA 283 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~~l~-----~~~~~~~-------------~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~ 283 (927)
..=++++..+++.+..--. +++.+.. .....-+.+++..- .-|.++-.+++++.
T Consensus 895 -~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl------~qPdLVYKFM~LAn- 966 (1702)
T KOG0915|consen 895 -SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL------GQPDLVYKFMQLAN- 966 (1702)
T ss_pred -hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc------CChHHHHHHHHHhh-
Confidence 2223455555555432000 0010000 01111122222210 00222222222221
Q ss_pred cCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH
Q 002400 284 EAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH 363 (927)
Q Consensus 284 ~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 363 (927)
.+..|..|..|.+.+|.+++...+.+.||++.++|.+.++--||++.||.+.....+.+...-. .....|+
T Consensus 967 --------h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k-~~vd~y~ 1037 (1702)
T KOG0915|consen 967 --------HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK-KVVDEYL 1037 (1702)
T ss_pred --------hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChH-HHHHHHH
Confidence 1367999999999999999999999999999999999999999999999999998888877543 3337899
Q ss_pred hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHH---HHHHHHHHHhh
Q 002400 364 HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGAL---TALASVADSSQ 440 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~---~al~~l~~~~~ 440 (927)
.+++..|+..+.+ ..++||+++|.||..++..-+.+.+...++.++..+++.+++-...||+++- .+++.+.-.+.
T Consensus 1038 neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1038 NEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999 9999999999999999999877777788999999999999999989998764 44555443332
Q ss_pred h-----hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcch
Q 002400 441 G-----QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTT 515 (927)
Q Consensus 441 ~-----~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 515 (927)
+ .-...++.++|+|..- .--.....+|..++.++..++...| ....|+.+.++..++...+. .+ ..+.
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~---gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~-lE--~~vL 1189 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDE---GIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSE-LE--PQVL 1189 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhcc---CcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccc-cc--hHHH
Confidence 2 3356788888888653 1113567899999999999999999 46899999999888875432 11 1111
Q ss_pred HHH-HHH-------HHHH----HHHhc-----ccccc-----chhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhh
Q 002400 516 SYM-LQA-------WARL----CKCLG-----QEFIP-----YMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQ 573 (927)
Q Consensus 516 ~~~-~~~-------~~~l----~~~~~-----~~~~~-----~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (927)
.|. +++ +.+. ++..+ +...+ -+.+++|.+.+.+...-
T Consensus 1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV--------------------- 1248 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV--------------------- 1248 (1702)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC---------------------
Confidence 111 111 0000 00000 00111 13444555555553321
Q ss_pred hhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002400 574 TITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVE 653 (927)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~ 653 (927)
+ +..|..+...+..++..++....||...++..+++.+.+ .++.+|++-+.+++.+++..
T Consensus 1249 ---------g-----l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S----- 1308 (1702)
T KOG0915|consen 1249 ---------G-----LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS----- 1308 (1702)
T ss_pred ---------C-----CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC-----
Confidence 1 224677888899999999999999999999999999998 69999999999999998764
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 002400 654 KGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD 733 (927)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 733 (927)
.++..+++...++..++.. + ...++.+..++.++..+..+.+..|..
T Consensus 1309 -------s~dq~qKLie~~l~~~l~k---~-----------------------es~~siscatis~Ian~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1309 -------SPDQMQKLIETLLADLLGK---D-----------------------ESLKSISCATISNIANYSQEMLKNYAS 1355 (1702)
T ss_pred -------ChHHHHHHHHHHHHHHhcc---C-----------------------CCccchhHHHHHHHHHhhHHHHHhhHH
Confidence 2345666666655544321 1 233466777777788888888888999
Q ss_pred hHHHHHHHHccCCChhHHhhHhHHHHHHHhh--cCC-CcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHh
Q 002400 734 TYLPFLLEACNDKHPDVRQAAVYGIGVCAEF--GGS-VFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQ 810 (927)
Q Consensus 734 ~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~--~~~-~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~ 810 (927)
.++|.+.-.+++. -|++.---=-..... ++. .+.-|.++++..+....... +.-.++..++.++..+..
T Consensus 1356 aILPLiFLa~~ee---~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn-----~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1356 AILPLIFLAMHEE---EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNN-----ESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred HHHHHHHHHHhHH---HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHcc
Confidence 9999877666644 122221110111122 222 33447777777766544322 234455555555544443
Q ss_pred hcCCCCCHhh---HHHHHHhcCC
Q 002400 811 FHRDSIDAAQ---VVPAWLSCLP 830 (927)
Q Consensus 811 ~~~~~~~~~~---~l~~~l~~Lp 830 (927)
.-...++.|. +.+..+..|.
T Consensus 1428 ~~sss~~~p~ilkl~~~ll~~L~ 1450 (1702)
T KOG0915|consen 1428 GLSSSAPIPVILKLALSLLDTLN 1450 (1702)
T ss_pred cccccCChHHHHHHHHHHHHHhh
Confidence 3323334444 3444555553
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=4.1e-17 Score=197.61 Aligned_cols=685 Identities=15% Similarity=0.141 Sum_probs=421.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhhChh--------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccc
Q 002400 22 FETLISNLMSSSNEHRSHAEVLLSHLRQSHPD--------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIF 93 (927)
Q Consensus 22 l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~--------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w 93 (927)
+..++..+.+++...|..|-..|..+.. +++ +.++.|+.+|.+ .+++.|..|+-.|.+...... ....|
T Consensus 60 IP~LV~lL~sg~~~vk~nAaaaL~nLS~-~e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~-~D~~~ 136 (2102)
T PLN03200 60 MPLLVSLLRSGTLGAKVNAAAVLGVLCK-EEDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGL-SDHVG 136 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcc-hhhhh
Confidence 4445666668888888888777666554 222 256788899864 479999999999988764420 00112
Q ss_pred cccCHhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhccCCCCCcc-----chHHHHHHHhcCCChHHHHHHHHH
Q 002400 94 TRLAPSTQANLKSVLLVQLQNE--TNKSIIKKICDAVSELAASVLPDGDWP-----ELIPFIFQCLVTFNDKIQESALLI 166 (927)
Q Consensus 94 ~~l~~~~~~~ik~~Ll~~l~~~--~~~~vr~~~~~~i~~ia~~~~~~~~w~-----~ll~~l~~~l~s~~~~~r~~al~~ 166 (927)
..+- .....-..|+..+.+. .+..++..++.++..++.+. .+.|. ..+|.++.+++++++..+..|+.+
T Consensus 137 ~~I~--v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~--en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~a 212 (2102)
T PLN03200 137 SKIF--STEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST--DGFWSATLEAGGVDILVKLLSSGNSDAQANAASL 212 (2102)
T ss_pred hhhh--hhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc--cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 1110 0123445677777653 23446667778888887653 34564 478999999999999999999999
Q ss_pred HHHhhhhhHHHHHHhH-HHHHHHHHhhhCC-CCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHHHHH----
Q 002400 167 LSRMSQFVSEVLIAHG-DTLHEVFSKFLGS-NNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRTLTE---- 238 (927)
Q Consensus 167 l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~l~~---- 238 (927)
+..++...++....-+ ...+|.+.+.+.+ +++.+|..|..+|.+++ .. +++.+..+ ..-+|.+++.+..
T Consensus 213 La~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLA-s~--s~e~r~~Iv~aGgIp~LI~lL~sp~~e 289 (2102)
T PLN03200 213 LARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALS-SQ--SKEAKQAIADAGGIPALINATVAPSKE 289 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHh-cC--CHHHHHHHHHCCCHHHHHHHHhCcchh
Confidence 9888766544222111 3468888888875 46799999999999998 32 12212222 2346776666542
Q ss_pred HHhc-CChhHHHHHHHHHHHHHccCcHHHHHHHHHH----------------HHHHHHHhhcc-------------Cchh
Q 002400 239 ALNK-GNESSAQEALELLIELAATEPRFLRKQLVDV----------------VGSMLQVAEAE-------------AVFP 288 (927)
Q Consensus 239 ~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~l----------------l~~ll~~~~~~-------------~~i~ 288 (927)
.+.. ........+...+.+++...+.+ -+++..+ ++.++...++. +.+.
T Consensus 290 ~~~~~~~~~Lqe~AvwALsNIcgg~~~l-l~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV 368 (2102)
T PLN03200 290 FMQGEFAQALQENAMGALANICGGMSAL-ILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILV 368 (2102)
T ss_pred hhccccchHHHHHHHHHHHHHhCCchhh-HHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHH
Confidence 1111 12334677888888888764321 1111111 11122111110 1122
Q ss_pred hhhCCcchh-HHHHHHHHHHHHhhhchH-HHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhH
Q 002400 289 GFLAAPEWQ-KHHAVLIALAQIAEGCSK-VMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRL 366 (927)
Q Consensus 289 ~~l~~~~~~-~r~aal~al~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~i 366 (927)
+++.+++.. ..+.+..+|..+.....- ..- +-...++.++..+...+..+|..+++++..++..-......-.-...
T Consensus 369 ~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L-~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~gg 447 (2102)
T PLN03200 369 KLLKPRDTKLVQERIIEALASLYGNAYLSRKL-NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREG 447 (2102)
T ss_pred HHhCCCCCchhHHHHHHHHHHhcCChHHHHHH-HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCc
Confidence 333333322 133344444332221100 000 01234566777778788999999999999998753333322334457
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 002400 367 LPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK 445 (927)
Q Consensus 367 l~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 445 (927)
+|.|++.|.+ ++..+|..|++++.+++...... ..... ...++.|.++|.+++..+|+.|+++|++++.. .++...
T Consensus 448 Ip~LV~LL~s-~s~~iQ~~A~~~L~nLa~~nden-r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~ 524 (2102)
T PLN03200 448 VQLLISLLGL-SSEQQQEYAVALLAILTDEVDES-KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRA 524 (2102)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHH
Confidence 9999999999 88999999999999998654321 11111 25678888899999999999999999999863 333444
Q ss_pred hH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 002400 446 YY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWA 523 (927)
Q Consensus 446 ~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 523 (927)
.+ ...+|.|.+.+... +...+..|..++..+......+.. ..+..+... ++...+..++..++
T Consensus 525 iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~~d~~~I--------~~Lv~LLls---dd~~~~~~aL~vLg 589 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRTADAATI--------SQLTALLLG---DLPESKVHVLDVLG 589 (2102)
T ss_pred HHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhccchhHH--------HHHHHHhcC---CChhHHHHHHHHHH
Confidence 44 25788888888652 346777888888888764332222 222232221 22346677788887
Q ss_pred HHHHHhccc-cc-cc--hhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHH
Q 002400 524 RLCKCLGQE-FI-PY--MSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNML 599 (927)
Q Consensus 524 ~l~~~~~~~-~~-~~--l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l 599 (927)
.+......+ +. .- -...++.|.+.+.... -..|..|+.++
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs------------------------------------~~ikk~Aa~iL 633 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSK------------------------------------EETQEKAASVL 633 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHcCCC------------------------------------HHHHHHHHHHH
Confidence 776543322 11 00 1245677777664321 13366788888
Q ss_pred HHHHHHhccccc-ccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHHHHH
Q 002400 600 CCYADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQ-LTDYIIPALV 677 (927)
Q Consensus 600 ~~l~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~ll 677 (927)
..++..-++... -.....++.++.++... +.++|+.++.+|..+.... ....... .-..++|.|+
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~------------~~~q~~~~v~~GaV~pL~ 700 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSI------------KENRKVSYAAEDAIKPLI 700 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCC------------CHHHHHHHHHcCCHHHHH
Confidence 888764333111 12345677777888764 7889999999999997532 1111222 2334778888
Q ss_pred HHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHH
Q 002400 678 EALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYG 757 (927)
Q Consensus 678 ~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~ 757 (927)
+.+... +...+..|+.+|+.++........-.-...++.+++.+++.++.+|++|+++
T Consensus 701 ~LL~~~----------------------d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 701 KLAKSS----------------------SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred HHHhCC----------------------ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHH
Confidence 887653 3567777777777777765332211224678999999999999999999999
Q ss_pred HHHHHhhcC-CC-cHHHH--HHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhh
Q 002400 758 IGVCAEFGG-SV-FKPLV--GEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQF 811 (927)
Q Consensus 758 lg~l~~~~~-~~-~~~~~--~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~ 811 (927)
|..++++.+ ++ +..++ ..++..|..+|+..+.+ +. ..-.+..+++.+.+.
T Consensus 759 L~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~---~~-~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 759 LAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD---SS-ATSEALEALALLART 812 (2102)
T ss_pred HHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc---hh-hHHHHHHHHHHHHhh
Confidence 999999876 23 33333 35677778888766543 22 222366677777764
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.86 E-value=3.9e-16 Score=161.29 Aligned_cols=691 Identities=15% Similarity=0.151 Sum_probs=405.0
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcccccccc-
Q 002400 18 NPAHFETLISNLMSSSNEHRSHAEVLLSHL-RQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFT- 94 (927)
Q Consensus 18 ~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~-~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~- 94 (927)
+-..+.-+|-...++++.-|+.+-..|..= ...-|......++-++.+ +-+++-|+.-.-++-+.+..-+.....|.
T Consensus 166 ~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 166 DERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred chHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 334566677777888888999998888652 222333344555555555 66777888777666666644321000011
Q ss_pred ---------ccCHhHH-----HHHHHHHHHHH--h----------hcchhhHHHHHHHHHHHHHhccCCCCCccchHHHH
Q 002400 95 ---------RLAPSTQ-----ANLKSVLLVQL--Q----------NETNKSIIKKICDAVSELAASVLPDGDWPELIPFI 148 (927)
Q Consensus 95 ---------~l~~~~~-----~~ik~~Ll~~l--~----------~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l 148 (927)
.++++.+ .+|...|...- . ...++.||+..+.+++.+|.+.. .++++|+|
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg----v~~llpfl 321 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALG----VEELLPFL 321 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhC----cHHHHHHH
Confidence 0222221 12222332221 1 11478899999999999998764 48899999
Q ss_pred HHHhcCC-ChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHh
Q 002400 149 FQCLVTF-NDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLD 227 (927)
Q Consensus 149 ~~~l~s~-~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 227 (927)
-..+.|. +...|+.++.+...+++..+....+|+..++..+.+++.|.+..||..+..++..++ +... +-..+.|..
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~la-e~~~-Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLA-ELVG-PYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHH-HhcC-CcchHHHHH
Confidence 9988886 889999999999999999998888899999999999999999999999999999988 4431 111222332
Q ss_pred hHHHHHH--------------------------------------HHHHHHhcCChhHHHHHHHHHHHHHc---cCcHHH
Q 002400 228 LLPLMMR--------------------------------------TLTEALNKGNESSAQEALELLIELAA---TEPRFL 266 (927)
Q Consensus 228 ~~p~ll~--------------------------------------~l~~~l~~~~~~~~~~a~~~l~~l~~---~~~~~~ 266 (927)
.+..+-+ ++...+++++++.....+.+...... ..|+++
T Consensus 400 vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~l 479 (975)
T COG5181 400 VLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKL 479 (975)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHH
Confidence 2222221 22222222222222221111111110 012222
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHH--------HHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHH
Q 002400 267 RKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV--------LIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPR 338 (927)
Q Consensus 267 ~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa--------l~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~ 338 (927)
+. ++.|.+ -++-|+.|-|. ..+-..++...+ -+.+...++..++|+...
T Consensus 480 r~---~v~pef--------------F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g------~~~v~~kil~~~~De~ep 536 (975)
T COG5181 480 RD---QVSPEF--------------FSPFWRRRSAGDRRSYKQVVLTTVILAKMGG------DPRVSRKILEYYSDEPEP 536 (975)
T ss_pred HH---hhcHHh--------------hchHHHhhhcccccccceeehhHHHHHHHcC------ChHHHHHHHhhccCCcch
Confidence 11 111111 14567776664 122222333222 245778888999999888
Q ss_pred HHHHHHHHHHHhHhhhch-hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHh
Q 002400 339 VRWAAINAIGQLSTDLGP-ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLL 417 (927)
Q Consensus 339 vr~~a~~~l~~~~~~~~~-~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l 417 (927)
.|..++.+..++...++. ++.......++..++.+++. ++..+. -...+++.+....+ -..+||++.+++..+..|
T Consensus 537 ~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqe-q~~t~~-~il~~f~tv~vsl~-~r~kp~l~~ivStiL~~L 613 (975)
T COG5181 537 YRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQE-QDTTVG-LILPCFSTVLVSLE-FRGKPHLSMIVSTILKLL 613 (975)
T ss_pred hhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh-cccccc-EEEecccceeeehh-hccCcchHHHHHHHHHHh
Confidence 888888888877776643 22233445566667777765 332221 11233333333322 224699999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHH
Q 002400 418 QNGKQMVQEGALTALASVADSSQGQ-FQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 496 (927)
Q Consensus 418 ~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 496 (927)
++.++.+|..+....++++...+.- -...+..+-..|...+. .+.+.+-+..+.++..|....+-..++|-+..+
T Consensus 614 ~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg----e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~i 689 (975)
T COG5181 614 RSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG----EDYPEVLGSILKAICSIYSVHRFRSMQPPISGI 689 (975)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC----cccHHHHHHHHHHHHHHhhhhcccccCCchhhc
Confidence 9999999999999999988666521 01112222222333322 244455555555555555555544444444444
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhc
Q 002400 497 MEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTIT 576 (927)
Q Consensus 497 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (927)
++.+..+..+. ...+...
T Consensus 690 lP~ltPILrnk---h~Kv~~n----------------------------------------------------------- 707 (975)
T COG5181 690 LPSLTPILRNK---HQKVVAN----------------------------------------------------------- 707 (975)
T ss_pred cccccHhhhhh---hHHHhhh-----------------------------------------------------------
Confidence 44443322210 0111112
Q ss_pred cCCceeeechhhHHhHHHHHHHHHHHHHHhcccc--cccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 002400 577 LGDKRIGIKTSVLEEKATACNMLCCYADELKEGF--FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEK 654 (927)
Q Consensus 577 ~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~ 654 (927)
.+.+++.++...+.-. ..++.-++.. +..+.. -+.++|+.|..+++.+.++.+
T Consensus 708 ------------------ti~lvg~I~~~~peyi~~rEWMRIcfeL-vd~Lks-~nKeiRR~A~~tfG~Is~aiG----- 762 (975)
T COG5181 708 ------------------TIALVGTICMNSPEYIGVREWMRICFEL-VDSLKS-WNKEIRRNATETFGCISRAIG----- 762 (975)
T ss_pred ------------------HHHHHHHHHhcCcccCCHHHHHHHHHHH-HHHHHH-hhHHHHHhhhhhhhhHHhhcC-----
Confidence 2333444443333211 1122222222 222322 278999999999999988752
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHh
Q 002400 655 GQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDT 734 (927)
Q Consensus 655 ~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ 734 (927)
.+ .++..|+..++.++ -..|...--.++-++++||+. .
T Consensus 763 ----------Pq----dvL~~LlnnLkvqe----------------------Rq~RvctsvaI~iVae~cgpf------s 800 (975)
T COG5181 763 ----------PQ----DVLDILLNNLKVQE----------------------RQQRVCTSVAISIVAEYCGPF------S 800 (975)
T ss_pred ----------HH----HHHHHHHhcchHHH----------------------HHhhhhhhhhhhhhHhhcCch------h
Confidence 12 24444455444321 334444455677788888764 5
Q ss_pred HHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCC
Q 002400 735 YLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRD 814 (927)
Q Consensus 735 ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~ 814 (927)
++|.++..-..++..|.+....++..+.+..|+.-..|+..|.+.|...+.|.+ ..-|..|..-+-.+..++++
T Consensus 801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD------~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD------PVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc------hHHHHHHHHHHHHHhcCCCC
Confidence 889998888889999999999999999999999999999999999999998764 34566677777778887777
Q ss_pred CCCH-------hhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHH
Q 002400 815 SIDA-------AQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTA 887 (927)
Q Consensus 815 ~~~~-------~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 887 (927)
..+. .-++|.+++.-|. .-....+++-.+. .++| ..-+.+.+.+.|-+ ++..+|
T Consensus 875 tg~eda~IHLlNllwpNIle~sPh-----vi~~~~Eg~e~~~-----~~lg-----~g~~m~Yv~qGLFH----Ps~~VR 935 (975)
T COG5181 875 TGDEDAAIHLLNLLWPNILEPSPH-----VIQSFDEGMESFA-----TVLG-----SGAMMKYVQQGLFH----PSSTVR 935 (975)
T ss_pred cccHHHHHHHHHHhhhhccCCCcH-----HHHHHHHHHHHHH-----HHhc-----cHHHHHHHHHhccC----chHHHH
Confidence 6533 3344444444432 1122223332222 2233 22345555666543 356788
Q ss_pred HHHHHHHHHHH
Q 002400 888 SRMINLLRQLQ 898 (927)
Q Consensus 888 ~~~~~~l~~~~ 898 (927)
.+.........
T Consensus 936 k~ywtvyn~my 946 (975)
T COG5181 936 KRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHhhhh
Confidence 88777766554
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=4.4e-17 Score=168.22 Aligned_cols=550 Identities=13% Similarity=0.106 Sum_probs=331.6
Q ss_pred cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHh
Q 002400 294 PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGA 373 (927)
Q Consensus 294 ~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~ 373 (927)
.+|+.|+.++.+..+|++-.+-...+|+..++..+..++.|.+..||-.++.+++.+++..+|.- ...++.++..|-+.
T Consensus 329 kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g 407 (975)
T COG5181 329 KSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEG 407 (975)
T ss_pred cchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHH
Confidence 58999999999999999977777789999999999999999999999999999999999887754 46677888888887
Q ss_pred ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHH
Q 002400 374 MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPY 453 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~ 453 (927)
... ....+-.+-..|.+.++.-+.++....|-...+..+++.+++++.+.+...+.........-+..-..|.+++.|.
T Consensus 408 ~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pe 486 (975)
T COG5181 408 ASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPE 486 (975)
T ss_pred HHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHH
Confidence 776 3333444555666666666666655556778999999999999887776665555544433333334567888888
Q ss_pred HHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcc-c
Q 002400 454 LKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQ-E 532 (927)
Q Consensus 454 L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 532 (927)
+++.........++..-.+...+-..++...|.. .+...++.... +..+|.|.-...+..++...+|. +
T Consensus 487 fF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~-------~v~~kil~~~~---De~ep~r~m~a~~vsri~~~lg~~~ 556 (975)
T COG5181 487 FFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP-------RVSRKILEYYS---DEPEPYRKMNAGLVSRIFSRLGRLG 556 (975)
T ss_pred hhchHHHhhhcccccccceeehhHHHHHHHcCCh-------HHHHHHHhhcc---CCcchhhhhhhHHHHHHHHhccccc
Confidence 7765433211112222233445666667666632 23333333211 23456676666666777666653 3
Q ss_pred cccch-hhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccccc
Q 002400 533 FIPYM-SVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF 611 (927)
Q Consensus 533 ~~~~l-~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~ 611 (927)
|..-+ ..++..++.+++.+.. .+.. -+.+++....+++....
T Consensus 557 ~dErleerl~d~il~Afqeq~~---------------t~~~----------------------il~~f~tv~vsl~~r~k 599 (975)
T COG5181 557 FDERLEERLYDSILNAFQEQDT---------------TVGL----------------------ILPCFSTVLVSLEFRGK 599 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhccc---------------cccE----------------------EEecccceeeehhhccC
Confidence 43332 2334455555543210 0000 01123333344555677
Q ss_pred ccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHH
Q 002400 612 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICAS 691 (927)
Q Consensus 612 ~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~ 691 (927)
||+..++..++.++.+. .+++|..|+.+++.+....+.+- -.+....+-..|.+.+ ++.++++...
T Consensus 600 p~l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~------------e~~~l~klg~iLyE~l-ge~ypEvLgs 665 (975)
T COG5181 600 PHLSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACG------------ETKELAKLGNILYENL-GEDYPEVLGS 665 (975)
T ss_pred cchHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcc------------hHHHHHHHhHHHHHhc-CcccHHHHHH
Confidence 99999999999999985 79999999999998876654220 1122222323334444 3346777777
Q ss_pred HHHHHHHhhc---------------------CCCCChhhHHHHHHHHHHHHHHhhhhhhh--hHHhHHHHHHHHccCCCh
Q 002400 692 MLDALNESIQ---------------------GKDKTAEERRIAICIFDDVMEHCREAALK--YYDTYLPFLLEACNDKHP 748 (927)
Q Consensus 692 ~l~~l~~~~~---------------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~~~~ll~~l~~~l~d~~~ 748 (927)
++.++..+.. +.+....+....+..+|.++...++.+.+ |. .+.-.|+..+...+.
T Consensus 666 il~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd~Lks~nK 744 (975)
T COG5181 666 ILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVDSLKSWNK 744 (975)
T ss_pred HHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHhhH
Confidence 7776655543 22223333444566666666655553332 22 233345555666666
Q ss_pred hHHhhHhHHHHHHHhhcCC-CcHH--------------------------H--HHHHHHHHHHhhcCCCCCCchhhhHHH
Q 002400 749 DVRQAAVYGIGVCAEFGGS-VFKP--------------------------L--VGEALSRLDFVIRHPNALHSDNVMAYD 799 (927)
Q Consensus 749 ~vr~~a~~~lg~l~~~~~~-~~~~--------------------------~--~~~il~~L~~~l~~~~~~~~~~~~~~~ 799 (927)
++|++|...+|.+++..|. ++.. | --.+++.|..-...| +..|..
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP------e~nVQn 818 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP------EANVQN 818 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc------hhHHHH
Confidence 6777776666666655331 1100 0 012344443322222 345666
Q ss_pred HHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHH---H-HHHH
Q 002400 800 NAVSALGKICQFHRDSI--DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIV---T-IFAE 873 (927)
Q Consensus 800 na~~al~~l~~~~~~~~--~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~---~-~~~~ 873 (927)
.+..|++-+..+-++.. .+-.+.|.+-++|.. .|..-+..+...+..|+-. +...+ +.+-.+ . ++..
T Consensus 819 GvLkam~fmFeyig~~s~dYvy~itPlleDAltD-rD~vhRqta~nvI~Hl~Ln--c~gtg----~eda~IHLlNllwpN 891 (975)
T COG5181 819 GVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD-RDPVHRQTAMNVIRHLVLN--CPGTG----DEDAAIHLLNLLWPN 891 (975)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc-cchHHHHHHHHHHHHHhcC--CCCcc----cHHHHHHHHHHhhhh
Confidence 67788888877765543 344566766677754 4656666777777777643 22333 233222 2 2333
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHHhhCC-hhhHHHHHhcC---CHHHHHHHHHhh
Q 002400 874 VLCGGKDLVTEQTASRMINLLRQLQQSLP-PSTLASTWSSL---QPQQQLALQSIL 925 (927)
Q Consensus 874 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l---~~~~~~~l~~~~ 925 (927)
+| +.++...+++.+.+..+.+... +..+.-+|+.| +...|++-=+.|
T Consensus 892 Il-----e~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 892 IL-----EPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred cc-----CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 33 4578889999999999998876 55455666776 344455444443
No 23
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.83 E-value=3.6e-13 Score=140.09 Aligned_cols=191 Identities=17% Similarity=0.349 Sum_probs=155.6
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccc
Q 002400 16 GPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTR 95 (927)
Q Consensus 16 ~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~ 95 (927)
+.|.+-+.++.+....|++..++||++.|.+++. +|++| ..--.++.++..|+....|..+|.+.|.++ |.-
T Consensus 10 dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk------Wkl 81 (1053)
T COG5101 10 DLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK------WKL 81 (1053)
T ss_pred ccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh------hhh
Confidence 3566788899999999999999999999999999 79987 677788888999999999999999999998 999
Q ss_pred cCHhHHHHHHHHHHHHHhhc-chhhHH-------HHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHH
Q 002400 96 LAPSTQANLKSVLLVQLQNE-TNKSII-------KKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLIL 167 (927)
Q Consensus 96 l~~~~~~~ik~~Ll~~l~~~-~~~~vr-------~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l 167 (927)
++.+.+..||.-+++.+.+- ++..+| +.+--.+-.|++.+|| ..||+++|.+++.-+ .+.++.+..+.+|
T Consensus 82 lp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivL 159 (1053)
T COG5101 82 LPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVL 159 (1053)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHH
Confidence 99999999999999987642 233443 4455667788999999 899999999998654 6778888899999
Q ss_pred HHhhhhhHH----------------HHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCC
Q 002400 168 SRMSQFVSE----------------VLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLP 217 (927)
Q Consensus 168 ~~l~~~~~~----------------~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~ 217 (927)
..+.+..-+ ++.-.+++++.++.+.+.-+ ++..-.+.+..+..++ ..++
T Consensus 160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl-~wiP 225 (1053)
T COG5101 160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFL-EWIP 225 (1053)
T ss_pred HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hhCc
Confidence 888776432 12224678888888888754 7778888888888887 6654
No 24
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.1e-16 Score=166.64 Aligned_cols=519 Identities=17% Similarity=0.192 Sum_probs=360.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHH
Q 002400 145 IPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKE 223 (927)
Q Consensus 145 l~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 223 (927)
++++...-.+..+.+|..-+.+........+.+ ....+.|.+.+.+++. +..+|...+-..+.+. .+...
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~---~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a-~~~~~----- 89 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGDQ---NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLA-FHLQI----- 89 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhhhHH---HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHH-Hhccc-----
Confidence 444444335566677777777777666665554 5677888888888876 5556766666666655 44422
Q ss_pred hHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHH
Q 002400 224 RFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVL 303 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal 303 (927)
.....-.++..+...+..+.+.+......++..+.-... ...-..+.+.+ .+.++..+...|..+.
T Consensus 90 -~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~---~~~~~~~l~~l----------~~ll~~~~~~~~~~aa 155 (569)
T KOG1242|consen 90 -VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK---GLSGEYVLELL----------LELLTSTKIAERAGAA 155 (569)
T ss_pred -cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh---ccCHHHHHHHH----------HHHhccccHHHHhhhh
Confidence 122223344444444444455555444444443321100 00111222222 2455567788888888
Q ss_pred HHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchH
Q 002400 304 IALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHP-RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRV 382 (927)
Q Consensus 304 ~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v 382 (927)
..+..+..|.+..- ..-..++..+....+|.+. ..|+++..+....+..+++.+ .+|+-.++|.++.++.| ..+.|
T Consensus 156 ~~~ag~v~g~~i~~-~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-EPyiv~~lp~il~~~~d-~~~~V 232 (569)
T KOG1242|consen 156 YGLAGLVNGLGIES-LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-EPYIVPILPSILTNFGD-KINKV 232 (569)
T ss_pred HHHHHHHcCcHHhh-hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-CchHHhhHHHHHHHhhc-cchhh
Confidence 88888888765411 1112477888888888765 456688889999999998777 78999999999999999 99999
Q ss_pred HHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc
Q 002400 383 QAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNAN 462 (927)
Q Consensus 383 ~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~ 462 (927)
|.+|..+...+....+...++..++.++..+ ....|..+..+++.+|.++.+.+..+.-+++.++|.+.+.+.+
T Consensus 233 r~Aa~~a~kai~~~~~~~aVK~llpsll~~l----~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D-- 306 (569)
T KOG1242|consen 233 REAAVEAAKAIMRCLSAYAVKLLLPSLLGSL----LEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD-- 306 (569)
T ss_pred hHHHHHHHHHHHHhcCcchhhHhhhhhHHHH----HHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc--
Confidence 9999999999988877655544555544444 4448899999999999999999999999999999999999866
Q ss_pred CcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcccc-----ccch
Q 002400 463 DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEF-----IPYM 537 (927)
Q Consensus 463 ~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l 537 (927)
....+|.++++|+-.++..+....+.++.+.+++.+-. |. .+...|+..+.. ..| .|-+
T Consensus 307 --T~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~d----------p~-~~~~e~~~~L~~---ttFV~~V~~psL 370 (569)
T KOG1242|consen 307 --TKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALAD----------PS-CYTPECLDSLGA---TTFVAEVDAPSL 370 (569)
T ss_pred --CCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcC----------cc-cchHHHHHhhcc---eeeeeeecchhH
Confidence 56789999999999999988766666666666554321 11 122223333322 223 2556
Q ss_pred hhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHh--cccccccHH
Q 002400 538 SVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADEL--KEGFFPWID 615 (927)
Q Consensus 538 ~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~--~~~~~~~~~ 615 (927)
.-++|.+-+.+... +. ..|..++..++.++.-. +..+.||++
T Consensus 371 almvpiL~R~l~eR----------------------------------st--~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 371 ALMVPILKRGLAER----------------------------------ST--SIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHHHHHHHHHhhc----------------------------------cc--hhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 66777777777431 11 12355667788888777 567999999
Q ss_pred HHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 002400 616 QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDA 695 (927)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~ 695 (927)
.++|.+-..+.+. .+++|..+..+++.+++... ...++...|.+.+.+..+
T Consensus 415 ~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g----------------~~~f~d~~p~l~e~~~~~------------ 465 (569)
T KOG1242|consen 415 SLLPGLKENLDDA-VPEVRAVAARALGALLERLG----------------EVSFDDLIPELSETLTSE------------ 465 (569)
T ss_pred HHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH----------------hhcccccccHHHHhhccc------------
Confidence 9999999988886 89999999999999998753 122366677777766554
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccC--CChhHHhhHhHHHHHHHhhcCCCcHHHH
Q 002400 696 LNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACND--KHPDVRQAAVYGIGVCAEFGGSVFKPLV 773 (927)
Q Consensus 696 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d--~~~~vr~~a~~~lg~l~~~~~~~~~~~~ 773 (927)
.....|..+...+++++..+|.. ++.+++|.++..... .++.+|..-.|.++.+-...+..+++|+
T Consensus 466 ---------k~~~~~~g~aq~l~evl~~~~v~---~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi 533 (569)
T KOG1242|consen 466 ---------KSLVDRSGAAQDLSEVLAGLGVE---KVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYI 533 (569)
T ss_pred ---------hhhhhhHHHhhhHHHHHhcccch---HHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHH
Confidence 23556777777888877777654 778888888877653 5667999999999988888888999999
Q ss_pred HHHHHHHHHhhcCCC
Q 002400 774 GEALSRLDFVIRHPN 788 (927)
Q Consensus 774 ~~il~~L~~~l~~~~ 788 (927)
.++++.+.+.+.+.+
T Consensus 534 ~~i~~~~~k~~ad~d 548 (569)
T KOG1242|consen 534 HEILDEFLKGLADND 548 (569)
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999998887543
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.6e-15 Score=156.66 Aligned_cols=493 Identities=16% Similarity=0.162 Sum_probs=325.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC
Q 002400 57 LNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 57 ~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
+..-+-+.+..+...|+-- +.+-..+.+| .|.. ++- -..+-..+++.+..+ .+.+|++.+.++.......-
T Consensus 58 ~~~~~~l~~~~~~~~~~~~-~v~~~~~a~~-----~~~~-d~~-~~~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~ 128 (569)
T KOG1242|consen 58 PCFEQRLNSLHNDNLRNNV-VVLEGTLAFH-----LQIV-DPR-PISIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSK 128 (569)
T ss_pred HHHHHHhccchhHHHhhhh-HHHHHHHHHh-----cccc-Ccc-hhHHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhh
Confidence 3333444334455555543 3344444444 1322 221 223557788888875 89999999999987654332
Q ss_pred CCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhh
Q 002400 137 PDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNC 215 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~ 215 (927)
...-..+++.+.+++.+.....|.++...+..+....+-.-. .-..++..+...+.|. +...|..++-+..... .+
T Consensus 129 -~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~-~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~-~~ 205 (569)
T KOG1242|consen 129 -GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESL-KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ-GN 205 (569)
T ss_pred -ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhh-hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH-Hh
Confidence 134456788888888888888888888888887766543211 1234566667777776 4444545555555555 44
Q ss_pred CCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC-cHHHHHHHHHHHHHHHHHhhccCchhhhhCCc
Q 002400 216 LPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE-PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAP 294 (927)
Q Consensus 216 ~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~ 294 (927)
+. ..+.+++..++..+.....+..+.++..+.+....+...- +.-++..++.+++.+. +.
T Consensus 206 Lg-----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~--------------~~ 266 (569)
T KOG1242|consen 206 LG-----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL--------------EA 266 (569)
T ss_pred cC-----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH--------------HH
Confidence 42 2344555555555555555666777777777776666542 2233333444444332 34
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhc
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAM 374 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l 374 (927)
.|+.+.+++..+|.++...++.+...++.++|.+...|.|.++.||.++..|+-++++.... .-+..++|.++.++
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l 342 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDAL 342 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999886542 34778999999999
Q ss_pred cCCCCchHHHHHHHHHH--HhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh--hhhhHHhHHHH
Q 002400 375 DDFQNPRVQAHAASAVL--NFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS--QGQFQKYYDAV 450 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~--~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~~~i 450 (927)
.| ++..+.+..- .|. .|+... -.|-+..+++.|.+.+...+...+..+...+++++... +..+.||++.+
T Consensus 343 ~d-p~~~~~e~~~-~L~~ttFV~~V----~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~L 416 (569)
T KOG1242|consen 343 AD-PSCYTPECLD-SLGATTFVAEV----DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSL 416 (569)
T ss_pred cC-cccchHHHHH-hhcceeeeeee----cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHH
Confidence 99 6655543322 221 122222 24778889999999999999999999999999999999 45788999999
Q ss_pred HHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhc
Q 002400 451 MPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLG 530 (927)
Q Consensus 451 ~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (927)
+|.+...+.+. .+.+|..+..+++.+.+.+|...|....+++++....-. . . .....+...++..++
T Consensus 417 lp~lk~~~~d~----~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k---~---~---~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 417 LPGLKENLDDA----VPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEK---S---L---VDRSGAAQDLSEVLA 483 (569)
T ss_pred hhHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccch---h---h---hhhHHHhhhHHHHHh
Confidence 99999987653 567898899999999999997777434444444332100 0 0 111223455666666
Q ss_pred cccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccc
Q 002400 531 QEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF 610 (927)
Q Consensus 531 ~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~ 610 (927)
..-..++..+++.++......-. ++ .++.+. +.++..+-...+..|
T Consensus 484 ~~~v~~~~~~~~~~~a~~~~~~~-----------------~~----------~~~dg~-------~~~~~~lp~~~~~~~ 529 (569)
T KOG1242|consen 484 GLGVEKVEDILPEILANASSVLI-----------------DE----------RIRDGV-------IWLFYLLPYIFGFQF 529 (569)
T ss_pred cccchHHHHHHHHHHHHHhhccc-----------------hh----------hhccCe-------eehhhccchhhhHHh
Confidence 66667788888888877754210 00 001110 012333333456778
Q ss_pred cccHHHHHHHHhhhhcccCcHHHHHHHH
Q 002400 611 FPWIDQVAPTLVPLLKFYFHEEVRKAAV 638 (927)
Q Consensus 611 ~~~~~~~~~~l~~~l~~~~~~~vR~~a~ 638 (927)
.||+.++++.+.+.+.+. ++.+|..+.
T Consensus 530 ~~yi~~i~~~~~k~~ad~-de~~~~~~~ 556 (569)
T KOG1242|consen 530 QPYIHEILDEFLKGLADN-DEKGRDTAL 556 (569)
T ss_pred HHHHHHHHHHHHHHhhhc-CCccccchh
Confidence 899999999888877753 455554443
No 26
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=8.2e-13 Score=140.47 Aligned_cols=541 Identities=15% Similarity=0.182 Sum_probs=308.6
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 20 AHFETLISNLMSS--SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 20 ~~l~~~L~~~~s~--d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
+.+++++.+...| |...|+||.+++++++. .|++| ..+.+++.+ +.++.+|.++-..|-..+... +...
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek------yne~ 74 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK------YNEA 74 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh------hccC
Confidence 4677788888776 88999999999999999 58865 788888877 589999999999999888775 6679
Q ss_pred CHhHHHHHHHHHHHHHhhc--------chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHH
Q 002400 97 APSTQANLKSVLLVQLQNE--------TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILS 168 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~--------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~ 168 (927)
+...++.||..+...+.-+ ..+.++++++++++.+...+|| ..|+.++..++..++-++. ..++..+.
T Consensus 75 nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~---~~~~dffl 150 (980)
T KOG2021|consen 75 NLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSA---ISGLDFFL 150 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccc---hhhHHHHH
Confidence 9999999999998877632 2567999999999999999999 7899999999887643221 11222222
Q ss_pred HhhhhhHHHH----------------------H-HhHHHHHHHHHhhhC---CC-CHHHHHHHHHHHHHHHHhhCC----
Q 002400 169 RMSQFVSEVL----------------------I-AHGDTLHEVFSKFLG---SN-NFDLRIAALEATVNFIMNCLP---- 217 (927)
Q Consensus 169 ~l~~~~~~~l----------------------~-~~~~~l~~~l~~~l~---~~-~~~vr~~a~~~l~~l~~~~~~---- 217 (927)
.++-.+.+.+ . ..++.+.....+++. .. ++++-...+.|.+.++ ..++
T Consensus 151 kvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fV-SWIdInLI 229 (980)
T KOG2021|consen 151 KVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFV-SWIDINLI 229 (980)
T ss_pred HHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHh-hhhhhhhh
Confidence 2221111110 0 123344433333332 11 4444444445544444 3322
Q ss_pred ----------------------------------CchhHHhHHhhHHHHHHHHHH--HHhcCChhHHHHH----------
Q 002400 218 ----------------------------------SLGEKERFLDLLPLMMRTLTE--ALNKGNESSAQEA---------- 251 (927)
Q Consensus 218 ----------------------------------~~~~~~~~~~~~p~ll~~l~~--~l~~~~~~~~~~a---------- 251 (927)
++-+.-.+-..+...++.... ..+..|.+.-...
T Consensus 230 aNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gve 309 (980)
T KOG2021|consen 230 ANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVE 309 (980)
T ss_pred hchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhccee
Confidence 000000000000000000000 0000111110000
Q ss_pred -HHHHHHHH-ccCcHH---HHHHHHHHHHHHHHHhhcc------------------------------------------
Q 002400 252 -LELLIELA-ATEPRF---LRKQLVDVVGSMLQVAEAE------------------------------------------ 284 (927)
Q Consensus 252 -~~~l~~l~-~~~~~~---~~~~l~~ll~~ll~~~~~~------------------------------------------ 284 (927)
..+|..+- +.++.+ ....+-.++|.+++.+.++
T Consensus 310 l~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~k 389 (980)
T KOG2021|consen 310 LTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFK 389 (980)
T ss_pred eehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHH
Confidence 01111110 000000 0001111222222221110
Q ss_pred ----------------------------------------------Cchhh----hh---CCcchhHHHHHHHHHHHHhh
Q 002400 285 ----------------------------------------------AVFPG----FL---AAPEWQKHHAVLIALAQIAE 311 (927)
Q Consensus 285 ----------------------------------------------~~i~~----~l---~~~~~~~r~aal~al~~i~~ 311 (927)
..+.+ .+ +..+|..-+.|++.+..++|
T Consensus 390 qicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE 469 (980)
T KOG2021|consen 390 QICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGE 469 (980)
T ss_pred HHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 11111 11 13579999999999999999
Q ss_pred hchHHH----------HhhHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHH--hccCC
Q 002400 312 GCSKVM----------IKNLDQVVSMVLN--SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVG--AMDDF 377 (927)
Q Consensus 312 ~~~~~~----------~~~l~~l~~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~--~l~~~ 377 (927)
+.+... ...+..+++.+.. ...++|+.|+---...+.++...+..+. .+++.++...+. .+.+
T Consensus 470 ~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~rglhn- 546 (980)
T KOG2021|consen 470 CLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDSRGLHN- 546 (980)
T ss_pred ccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccchhccc-
Confidence 765411 1233345555544 3577899999888888888777665443 344444444332 2334
Q ss_pred CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC------------hhHHHHHHHHHHHHHHHhh---hh
Q 002400 378 QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK------------QMVQEGALTALASVADSSQ---GQ 442 (927)
Q Consensus 378 ~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~------------~~v~~~a~~al~~l~~~~~---~~ 442 (927)
++..||.+|.+.+.+|++...+ .+.||.+.++..+..+|.... ..-+...++++|.+..... +.
T Consensus 547 ~ne~Vr~RawYLF~RfVKlLkk-qlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~ 625 (980)
T KOG2021|consen 547 KNENVRLRAWYLFTRFVKLLKK-QLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAEL 625 (980)
T ss_pred cccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHH
Confidence 6789999999999999999874 467999999999999883221 1223445566665542211 11
Q ss_pred hHHhHHHHHHH---------HHHHHhcccCcchhhHHH---HHHHHHHHHHHhhCc-----------chhhhhHHHHHHH
Q 002400 443 FQKYYDAVMPY---------LKAILVNANDKSNRMLRA---KSMECISLVGMAVGK-----------DKFRDDAKQVMEV 499 (927)
Q Consensus 443 ~~~~~~~i~~~---------L~~~l~~~~~~~~~~lr~---~a~~~l~~l~~~~~~-----------~~~~~~~~~i~~~ 499 (927)
-..|.+.++.+ +...+. .+.+...... .++-++|.+++.... ..|...++.++..
T Consensus 626 qaay~~~litpl~~~~~igl~~a~la--sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ 703 (980)
T KOG2021|consen 626 QAAYANTLITPLILDQIIGLLFAQLA--SDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVT 703 (980)
T ss_pred HHHHHhcccChHHHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHH
Confidence 12344433332 222222 2211111111 223345555543321 1233333333333
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCC
Q 002400 500 LMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGD 579 (927)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (927)
+.. +...+++|..+...++++...+|++.-||+|+.++.+++....
T Consensus 704 ls~-----f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~----------------------------- 749 (980)
T KOG2021|consen 704 LSF-----FNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDL----------------------------- 749 (980)
T ss_pred Hhh-----ccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCH-----------------------------
Confidence 322 2234679999999999999999999999999999999977732
Q ss_pred ceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 002400 580 KRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 623 (927)
Q Consensus 580 ~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 623 (927)
.+...-+..++.+....+....+.+++.+|.++-
T Consensus 750 ----------kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~ 783 (980)
T KOG2021|consen 750 ----------KEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLN 783 (980)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455667777777777888888887776543
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=6e-15 Score=168.10 Aligned_cols=507 Identities=12% Similarity=0.132 Sum_probs=339.6
Q ss_pred hcCCChhHHHHHHHHHHhhcccCccccccccccCHh--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCc
Q 002400 64 SSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS--TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDW 141 (927)
Q Consensus 64 ~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~--~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w 141 (927)
..+++|..|+.+.+-|-..+... .+.++- ....|...+...|.+. +..++..++.-++.+...- ..+--
T Consensus 827 ~~s~nph~R~A~~VWLLs~vq~l-------~~~~~v~l~~~eI~~aF~~~Lsd~-dEf~QDvAsrGlglVYelg-d~~~k 897 (1702)
T KOG0915|consen 827 LTSPNPHERQAGCVWLLSLVQYL-------GQQPEVVLMLKEIQEAFSHLLSDN-DEFSQDVASRGLGLVYELG-DSSLK 897 (1702)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh-------ccCchhhhccHHHHHHHHHHhccc-HHHHHHHHhcCceEEEecC-CchhH
Confidence 34889999999999887777653 222221 2344556666666654 7778887777776543321 11233
Q ss_pred cchHHHHHHHhcCC---------ChHHH----------HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-CHHHH
Q 002400 142 PELIPFIFQCLVTF---------NDKIQ----------ESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-NFDLR 201 (927)
Q Consensus 142 ~~ll~~l~~~l~s~---------~~~~r----------~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr 201 (927)
.+++..|+..+..+ +..+- -+.+.+...+|....+. .-+.++=-|++..++. ...-|
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl---~qPdLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL---GQPDLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc---CChHHHHHHHHHhhhhchhhcc
Confidence 56777766655321 11110 11344555555444332 2245555566666655 66788
Q ss_pred HHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHh
Q 002400 202 IAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVA 281 (927)
Q Consensus 202 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~ 281 (927)
..|...++.++ .. ......++++.+++.+...=-+++..+......+|..+..+..+.+..|+.+|+.-++
T Consensus 975 ~GaAfGf~~i~-~~-----a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL--- 1045 (1702)
T KOG0915|consen 975 KGAAFGFGAIA-KQ-----AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELL--- 1045 (1702)
T ss_pred cchhhchHHHH-HH-----HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---
Confidence 88888889888 32 1356677788888887776567788888888899999998878888888888888777
Q ss_pred hccCchhhhhCCcchhHHHHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHh---hhch-
Q 002400 282 EAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLST---DLGP- 356 (927)
Q Consensus 282 ~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~---~~~~- 356 (927)
..+.+..||+|+|++.||..+..|.+ +.+.++++++...+++.+.|-+..||.+|-.+...++. ....
T Consensus 1046 -------~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1046 -------VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred -------HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44557789999999999999999976 46778899999999999999999999987555444443 2211
Q ss_pred ---hHHHHhHhhHHHHHHH-hccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC------------
Q 002400 357 ---ELQTQFHHRLLPALVG-AMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG------------ 420 (927)
Q Consensus 357 ---~~~~~~~~~il~~ll~-~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~------------ 420 (927)
.-....+..++|.|+. .+.+ ..+.||..+...+..+++..++ .+.||++.+++.|+...+.-
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gims-~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIMS-KVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCccc-chHHHHHHHHHHHHHHHHhchh-hhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 1114678888898885 3345 7889999999999999999885 57899999999988776432
Q ss_pred ----------------------------------------------------ChhHHHHHHHHHHHHHHHhhhhhHHhHH
Q 002400 421 ----------------------------------------------------KQMVQEGALTALASVADSSQGQFQKYYD 448 (927)
Q Consensus 421 ----------------------------------------------------~~~v~~~a~~al~~l~~~~~~~~~~~~~ 448 (927)
.-..|..+...|..++...+.+++||..
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh
Confidence 1123445566777777888888889999
Q ss_pred HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 002400 449 AVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKC 528 (927)
Q Consensus 449 ~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (927)
.++..++..+++ .+..+|...-.++|.++..-.++.+..+...++..++. .+++.+.........|++.
T Consensus 1277 Kll~al~~g~~d----RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~-------k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1277 KLLRALFPGAKD----RNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG-------KDESLKSISCATISNIANY 1345 (1702)
T ss_pred HHHHHHhhcccc----ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc-------cCCCccchhHHHHHHHHHh
Confidence 888888888765 34456766677889998887767777777666655442 2223334444444558888
Q ss_pred hccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcc
Q 002400 529 LGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKE 608 (927)
Q Consensus 529 ~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~ 608 (927)
..+.+..|...++|.++=.+.... .+..+-|+.+ +..+...-.+
T Consensus 1346 s~e~Lkn~asaILPLiFLa~~ee~-------------Ka~q~Lw~dv-----------------------W~e~vsggag 1389 (1702)
T KOG0915|consen 1346 SQEMLKNYASAILPLIFLAMHEEE-------------KANQELWNDV-----------------------WAELVSGGAG 1389 (1702)
T ss_pred hHHHHHhhHHHHHHHHHHHHhHHH-------------HHHHHHHHHH-----------------------HHHhCCCCcc
Confidence 888899999999999987775320 0011112211 1111111111
Q ss_pred cccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHH
Q 002400 609 GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 647 (927)
Q Consensus 609 ~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~ 647 (927)
...=|..+++-.+.........|.+|..++..+..+...
T Consensus 1390 tvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1390 TVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 122256666665555555555799999999998877654
No 28
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.75 E-value=1e-12 Score=143.64 Aligned_cols=210 Identities=18% Similarity=0.228 Sum_probs=157.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccc----
Q 002400 21 HFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTR---- 95 (927)
Q Consensus 21 ~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~---- 95 (927)
.+...+...+|+|+..++.||+.|+++++ +++ |...|..+..+ +.+..+|+.|.+.|||.|.++ |..
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~------W~~~~~~ 76 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH------WREENGN 76 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH------hhhhccc
Confidence 34455677899999999999999999999 466 88899999887 689999999999999999999 975
Q ss_pred -cCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh
Q 002400 96 -LAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV 174 (927)
Q Consensus 96 -l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~ 174 (927)
+.++++..||..++..+.+. ++....+.+.+++.||+.++| ++||+++|.+...+++.|...-++.+.+++.+.+..
T Consensus 77 ~i~p~e~v~IR~~l~~lii~s-~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 77 SILPDENVLIRDELFSLIISS-SNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred CCCCccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 66777779999999999986 777777999999999999999 999999999999999988888889999999998876
Q ss_pred HHH------HHHhHHHHHHHHHhhhCCC--CHHH-H----------HHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHH
Q 002400 175 SEV------LIAHGDTLHEVFSKFLGSN--NFDL-R----------IAALEATVNFIMNCLPSLGEKERFLDLLPLMMRT 235 (927)
Q Consensus 175 ~~~------l~~~~~~l~~~l~~~l~~~--~~~v-r----------~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~ 235 (927)
.+. |..-.+.+.+++.+.+... .... + ..+++.+..+....+++ .++.+...++..+..
T Consensus 155 r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qd--i~eFfEd~l~~~m~~ 232 (947)
T COG5657 155 RRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQD--IPEFFEDNLDKFMEH 232 (947)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHH
Confidence 642 2222333443333333221 1111 1 11333333333122322 346778888888888
Q ss_pred HHHHHhc
Q 002400 236 LTEALNK 242 (927)
Q Consensus 236 l~~~l~~ 242 (927)
....+..
T Consensus 233 F~klls~ 239 (947)
T COG5657 233 FCKLLSY 239 (947)
T ss_pred HHHHHhh
Confidence 8877753
No 29
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=8.6e-10 Score=120.50 Aligned_cols=770 Identities=14% Similarity=0.136 Sum_probs=391.6
Q ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 18 NPAHFETLISNLMSS-SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 18 ~~~~l~~~L~~~~s~-d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
+...+.+++..++++ +.+....++++|.+.+.. |.+| ..-.++++.+..+++|+++|+.|.-.+.++ |+.+
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S-~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~------~e~~ 76 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCS-QQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR------WEEC 76 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-HHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh------hccC
Confidence 357788889999877 777888999999999884 6655 455566666888899999999999999999 9999
Q ss_pred CHhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC-Ch--HHHHHHHHHHHHhh
Q 002400 97 APSTQANLKSVLLVQLQNE--TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF-ND--KIQESALLILSRMS 171 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~--~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~-~~--~~r~~al~~l~~l~ 171 (927)
+++...+++..++..+... ...-|-+.++-.++.++-+..| +.||+-+..++.+++.+ ++ ..-..+..+|..+.
T Consensus 77 ~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999987643 3456777788888888888777 79999999999988653 22 12222333333332
Q ss_pred hhhHH-----------------HHHHhHHHHHHHHHhhhCCC---CH-----HHHHHHHHHHHHHHHhhCCCchhHHhHH
Q 002400 172 QFVSE-----------------VLIAHGDTLHEVFSKFLGSN---NF-----DLRIAALEATVNFIMNCLPSLGEKERFL 226 (927)
Q Consensus 172 ~~~~~-----------------~l~~~~~~l~~~l~~~l~~~---~~-----~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 226 (927)
..+. .+........+++...++.. .. -.+.+|++|...++ .++.-+ +....
T Consensus 156 -~~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi-~~i~~~--~~~c~ 231 (982)
T KOG2022|consen 156 -FMPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWI-RYISLT--GMDCD 231 (982)
T ss_pred -cCcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHH-HHhccc--cccHH
Confidence 2221 11222233334333333322 12 46889999999998 655322 11122
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-cc------------CcHHHHHHHHHHHHHHHHHhhcc-CchhhhhC
Q 002400 227 DLLPLMMRTLTEALNKGNESSAQEALELLIELA-AT------------EPRFLRKQLVDVVGSMLQVAEAE-AVFPGFLA 292 (927)
Q Consensus 227 ~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~-~~------------~~~~~~~~l~~ll~~ll~~~~~~-~~i~~~l~ 292 (927)
.....++..+.+..... -+.+..++....+.. ++ +..+...-+..+++.++..+..- ..+ +...
T Consensus 232 ~i~~~ll~~l~~s~~~~-~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~-~~~e 309 (982)
T KOG2022|consen 232 QITQVLLDVLGQSTEGS-YEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI-QEEE 309 (982)
T ss_pred HHHHHHHHHHhhhcccc-ccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 23333333333221110 001111111111100 00 00111111222333222111000 000 0111
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVG 372 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~ 372 (927)
+++ .-+-....+-.+.-+.. ..+++.+++.+-++ . . .++...++..++.
T Consensus 310 ~~d--~~~e~i~~~~~i~v~~~---En~l~~lid~~~~g-~--~-----------------------~e~v~rlv~vll~ 358 (982)
T KOG2022|consen 310 NAD--ASEEEIVTFLAITVSSV---ENHLPTLIDCAAQG-E--Q-----------------------SELVIRLVQVLLV 358 (982)
T ss_pred CCC--chhHHHHHHHHHHHHHH---hcccHHHHHHHhhc-c--h-----------------------HHHHHHHHHHHHH
Confidence 111 00001111111111111 13344444444333 1 1 1222222333333
Q ss_pred hccCCCCchHHHHH----HHHHHHhHhc--------C--CCcccc-CchHHHHHHHHHHhcCCC---------------h
Q 002400 373 AMDDFQNPRVQAHA----ASAVLNFSEN--------C--TPDILT-PYLDGIVSKLLVLLQNGK---------------Q 422 (927)
Q Consensus 373 ~l~~~~~~~v~~~a----~~al~~l~~~--------~--~~~~~~-~~l~~l~~~L~~~l~~~~---------------~ 422 (927)
+.+-+..+.|.+.. ......+.+. . ....+. |....+++.++.-+.-++ .
T Consensus 359 ~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~ 438 (982)
T KOG2022|consen 359 LTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFE 438 (982)
T ss_pred HhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHH
Confidence 32221111111111 1111111110 0 000011 222233333333222111 1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc-CcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHH
Q 002400 423 MVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNAN-DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 501 (927)
Q Consensus 423 ~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~-~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 501 (927)
..|...-.++...-...|+. .++.++..|.+.+.... +++.+..-..++-++..++...| +...+..+.+++...
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~---ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~a 514 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDG---LLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSA 514 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhcc
Confidence 12333223333333333332 33445555556655544 33444444556777888898888 566777777777665
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCce
Q 002400 502 SLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKR 581 (927)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (927)
.+.-+.++ -.........++.++.-+++. ..|++..+|.+++.+....
T Consensus 515 sik~S~~n--~ql~~Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~Lh~sk----------------------------- 562 (982)
T KOG2022|consen 515 SIKLSAPN--PQLLSTSSDLIGSLSNWLGEH-PMYLNPSLPLLFQGLHNSK----------------------------- 562 (982)
T ss_pred ccccccCC--hhHHHHHHHHHHHHHHHHhcC-CcccCchHHHHHHHhcCch-----------------------------
Confidence 54333221 113445556677777666654 4578888899999885321
Q ss_pred eeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcc-cCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002400 582 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF-YFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGR 660 (927)
Q Consensus 582 ~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~ 660 (927)
+-..++..+..+++.++.++.||..+++..+-..+.. ...+..|...+.++|.++...+
T Consensus 563 ---------~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~----------- 622 (982)
T KOG2022|consen 563 ---------ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK----------- 622 (982)
T ss_pred ---------HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc-----------
Confidence 1244666799999999999999999999887776644 2356789999999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHH---HHHHHHHHHHhh----------h-
Q 002400 661 NESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIA---ICIFDDVMEHCR----------E- 726 (927)
Q Consensus 661 ~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a---~~~l~~l~~~~~----------~- 726 (927)
++...++...++..++..+..- +..+-.+++.+... +.++..++...- +
T Consensus 623 -pEe~~kyl~~lin~il~qle~~----------------l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~ 685 (982)
T KOG2022|consen 623 -PEEIPKYLMKLINPILSQLEIN----------------LAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPE 685 (982)
T ss_pred -HHhHHHHHHHHHHHHHHHHHHh----------------hcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchh
Confidence 3334555555555555443321 00001111111111 222222222210 0
Q ss_pred ---------hhhhhHHhHHHHHHHHcc--CCChhHHhhHhHHHHHHHhhcCCCc-HHHHHHHHHHHHHhhcCCCCCCchh
Q 002400 727 ---------AALKYYDTYLPFLLEACN--DKHPDVRQAAVYGIGVCAEFGGSVF-KPLVGEALSRLDFVIRHPNALHSDN 794 (927)
Q Consensus 727 ---------~~~~~~~~ll~~l~~~l~--d~~~~vr~~a~~~lg~l~~~~~~~~-~~~~~~il~~L~~~l~~~~~~~~~~ 794 (927)
.+.....+++|.+-+.+. -++.++-..+|...+.-....++.| .|+++++...+......+
T Consensus 686 ~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~------- 758 (982)
T KOG2022|consen 686 QREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC------- 758 (982)
T ss_pred hhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch-------
Confidence 122244455565555443 3556677777776666555555567 888888888888755443
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCC-----HhhHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhH
Q 002400 795 VMAYDNAVSALGKICQFHRDSID-----AAQVVPAWLSCL---PLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPK 866 (927)
Q Consensus 795 ~~~~~na~~al~~l~~~~~~~~~-----~~~~l~~~l~~L---p~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 866 (927)
..++-....+...+-...++..+ ....+..|+-.. |..++.+.-...+.++.+.+++ .|.++.+.+.+..+
T Consensus 759 ~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk-~P~~~~~~~~~~ts 837 (982)
T KOG2022|consen 759 LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKK-IPKFLEPSMLAFTS 837 (982)
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHh-CcCccccchHHHHH
Confidence 22322222222111111222222 233444444322 5556667777888888888865 45565554556667
Q ss_pred HHHH-HHHHhcCCCCCCcHHHHHHHHHHHHHHHhhC-C--hhhHHHHHhcCCHHHH
Q 002400 867 IVTI-FAEVLCGGKDLVTEQTASRMINLLRQLQQSL-P--PSTLASTWSSLQPQQQ 918 (927)
Q Consensus 867 i~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~l~~~~~ 918 (927)
++.+ ....|... -.-+-....+++.++...- . ...+.++.+..++..-
T Consensus 838 ~i~~~a~~ll~~p----E~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li 889 (982)
T KOG2022|consen 838 LILICAFILLNSP----EPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILI 889 (982)
T ss_pred HHHHHHHHhcCCC----ccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHH
Confidence 7663 34444322 1223344445555554332 2 3345555555544433
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.71 E-value=3.8e-13 Score=154.83 Aligned_cols=518 Identities=15% Similarity=0.176 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHH
Q 002400 101 QANLKSVLLVQLQNE--TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVL 178 (927)
Q Consensus 101 ~~~ik~~Ll~~l~~~--~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l 178 (927)
+..+.+.+-+.+.+- ....-+..+..++...... ..-..+++.+++++.+++...|+.++..+..+...-++.
T Consensus 2 ~~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G----~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~- 76 (526)
T PF01602_consen 2 RKRISQELAKILNSFKIDISKKKEALKKLIYLMMLG----YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL- 76 (526)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH-
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH-
Confidence 344556666666654 3334445555555544332 244578999999999999999999999999998887773
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 002400 179 IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIEL 258 (927)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l 258 (927)
.--+.+.+.+-+.++++.+|..|+++++.+. . .++.+.+.+.+.+++.++++.+++.|+.++..+
T Consensus 77 ---~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~-----------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i 141 (526)
T PF01602_consen 77 ---LILIINSLQKDLNSPNPYIRGLALRTLSNIR-T-----------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKI 141 (526)
T ss_dssp ---HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--S-----------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-c-----------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3346777888899999999999999999988 2 235666777777777889999999999999999
Q ss_pred HccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHH
Q 002400 259 AATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPR 338 (927)
Q Consensus 259 ~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~ 338 (927)
....|..+... +++.+. +.+.|+++.++.+|+.++..+ +..++.....++.++..+.+.+.+++|.
T Consensus 142 ~~~~p~~~~~~---~~~~l~----------~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 207 (526)
T PF01602_consen 142 YRKDPDLVEDE---LIPKLK----------QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPW 207 (526)
T ss_dssp HHHCHCCHHGG---HHHHHH----------HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHH
T ss_pred hccCHHHHHHH---HHHHHh----------hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchH
Confidence 88777666543 333333 455678899999999999998 3333333355677777777777999999
Q ss_pred HHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhc
Q 002400 339 VRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQ 418 (927)
Q Consensus 339 vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~ 418 (927)
++...+.++..++....... .-..+++.+...+.+ .++.|.-.++.++..+... .+.+..+++.|..++.
T Consensus 208 ~q~~il~~l~~~~~~~~~~~---~~~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~------~~~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 208 LQIKILRLLRRYAPMEPEDA---DKNRIIEPLLNLLQS-SSPSVVYEAIRLIIKLSPS------PELLQKAINPLIKLLS 277 (526)
T ss_dssp HHHHHHHHHTTSTSSSHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCChhhh---hHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhhcc------hHHHHhhHHHHHHHhh
Confidence 99999999998775432211 115678888888877 7888888888887755322 1267888999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHH
Q 002400 419 NGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 498 (927)
Q Consensus 419 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~ 498 (927)
+.++.+|-.++.++..++...++. +......+. .+.. +++..+|..+++.+..++.. ..+...+++++.
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~~~~----v~~~~~~~~-~l~~---~~d~~Ir~~~l~lL~~l~~~---~n~~~Il~eL~~ 346 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSNPPA----VFNQSLILF-FLLY---DDDPSIRKKALDLLYKLANE---SNVKEILDELLK 346 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHCHHH----HGTHHHHHH-HHHC---SSSHHHHHHHHHHHHHH--H---HHHHHHHHHHHH
T ss_pred cccchhehhHHHHHHHhhcccchh----hhhhhhhhh-eecC---CCChhHHHHHHHHHhhcccc---cchhhHHHHHHH
Confidence 999999999999999988665332 221111122 2221 14567899999998888764 334445555555
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccC
Q 002400 499 VLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLG 578 (927)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (927)
.+... .+...+..+...++.++.....+...|++.++. .+....+.
T Consensus 347 ~l~~~------~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~----ll~~~~~~------------------------ 392 (526)
T PF01602_consen 347 YLSEL------SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLK----LLEISGDY------------------------ 392 (526)
T ss_dssp HHHHC--------HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHH----HHHCTGGG------------------------
T ss_pred HHHhc------cchhhhhhHHHHHHHHHhccCchHHHHHHHHHH----hhhhcccc------------------------
Confidence 54221 123478888999999999887776666655544 44321110
Q ss_pred CceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002400 579 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQ 658 (927)
Q Consensus 579 ~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~ 658 (927)
+ ...++..+..+....++. -..++..+...+.+..++.++..++-.+|.......
T Consensus 393 -----~-------~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~--------- 447 (526)
T PF01602_consen 393 -----V-------SNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIE--------- 447 (526)
T ss_dssp -----C-------HCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT---------
T ss_pred -----c-------cchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc---------
Confidence 0 112333455555443332 234455566666665577889999888888865531
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHH
Q 002400 659 GRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPF 738 (927)
Q Consensus 659 ~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~ 738 (927)
. .. ....++..+.+.+..+ +..+|...+.++..+....+..- ..+.+++.
T Consensus 448 -~----~~-~~~~~~~~l~~~~~~~----------------------~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~ 497 (526)
T PF01602_consen 448 -N----TE-SAPDILRSLIENFIEE----------------------SPEVKLQILTALAKLFKRNPENE--VQNEILQF 497 (526)
T ss_dssp -T----TT-HHHHHHHHHHHHHTTS----------------------HHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHH
T ss_pred -c----cc-cHHHHHHHHHHhhccc----------------------cHHHHHHHHHHHHHHHhhCCchh--hHHHHHHH
Confidence 0 01 3344555555555443 36788888888888888776421 23367777
Q ss_pred HHHHcc--CCChhHHhhHhHHHHHHH
Q 002400 739 LLEACN--DKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 739 l~~~l~--d~~~~vr~~a~~~lg~l~ 762 (927)
+..... +.+++||+-|.+.++.+-
T Consensus 498 ~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 498 LLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 777777 789999999988776553
No 31
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.9e-14 Score=150.02 Aligned_cols=353 Identities=16% Similarity=0.190 Sum_probs=267.0
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC---Ccc
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG---DWP 142 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~ 142 (927)
+.+++.+..|...+|+.+++.. -..+..-.+..+...+++.|....++.++-.++.++..||....... .-.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~-----~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKER-----NPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCC-----CCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 6677778888899999988751 24566666778888889999866689999999999999999754422 224
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhCCCC-HHHHHHHHHHHHHHHHhhCCCc
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLGSNN-FDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
..+|.+++++.+++..+++.|.++|+.++.+.+. +..++ ..+++-++..+..+. ......+..++.+++ ..-...
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc-rgk~P~ 229 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC-RGKNPS 229 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH-cCCCCC
Confidence 6889999999999999999999999999987654 22221 234555566666554 367778899999999 654222
Q ss_pred hhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhH
Q 002400 220 GEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQK 298 (927)
Q Consensus 220 ~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~ 298 (927)
..... +..+++.+..++.+.|+++...++..+..+....+..+...+. .++|.+. .++.+.+.++
T Consensus 230 P~~~~----v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV----------~lL~~~~~~v 295 (514)
T KOG0166|consen 230 PPFDV----VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLV----------DLLGHSSPKV 295 (514)
T ss_pred CcHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHH----------HHHcCCCccc
Confidence 12223 3445556666677899999999999999888776655544333 4455554 5556778889
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 299 HHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 299 r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
+-.|+.++|.|+.|........+. ..+|.+...+. .+...+|..|||+++.+.......++.-.-..++|.|+..+..
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 999999999999988775444443 46788888877 6677799999999999998666666556677899999999999
Q ss_pred CCCchHHHHHHHHHHHhHhcCCCccccCchH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 377 FQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 377 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~--~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
.+.++|..|+|++.+++....++.+ .|+- .+++.+..+|.-.+.++...++.++..+-...+.
T Consensus 376 -~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 376 -AEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred -cchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988776654 4442 5788888888777888888899999998766554
No 32
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.2e-10 Score=125.72 Aligned_cols=413 Identities=15% Similarity=0.155 Sum_probs=248.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-HhhChhHHHHHHHHHHhc---CCChhHHHHHHHHHHhhcccCccccccccccC--
Q 002400 24 TLISNLMSSSNEHRSHAEVLLSHL-RQSHPDAFALNLSRMLSS---SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA-- 97 (927)
Q Consensus 24 ~~L~~~~s~d~~~r~~Ae~~l~~~-~~~~p~~~~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~-- 97 (927)
+++..+...++-+|.+=.+-++.+ +...|+.| +.++..+.+ +++...-..|-++|+..++++ .|..-.
T Consensus 93 nIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~W-p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y-----e~k~~eeR 166 (1010)
T KOG1991|consen 93 NILETIVQVPELIRVQLTACLNTIIKADYPEQW-PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY-----EWKKDEER 166 (1010)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHhcCCcccc-hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH-----hhcccccc
Confidence 455555566677888888888764 44456433 344443332 556666667778888888765 265421
Q ss_pred -------HhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhccCCCC--------CccchHHHHHHHhc-----CC
Q 002400 98 -------PSTQANLKSVLLVQLQNE--TNKSIIKKICDAVSELAASVLPDG--------DWPELIPFIFQCLV-----TF 155 (927)
Q Consensus 98 -------~~~~~~ik~~Ll~~l~~~--~~~~vr~~~~~~i~~ia~~~~~~~--------~w~~ll~~l~~~l~-----s~ 155 (927)
.+.-..|.+..-+.+..+ ....+.+.++.+.-....+..|.. .|-+++-.+++.-- +-
T Consensus 167 ~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~ 246 (1010)
T KOG1991|consen 167 QPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSL 246 (1010)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccC
Confidence 222333333333333333 233455556665555666666632 45444444433211 11
Q ss_pred Ch---------HHHHHHHHHHHHhhhhhHHH---------HH-----HhHHHHHHHHHhhhCC---C---CHHHHHHHHH
Q 002400 156 ND---------KIQESALLILSRMSQFVSEV---------LI-----AHGDTLHEVFSKFLGS---N---NFDLRIAALE 206 (927)
Q Consensus 156 ~~---------~~r~~al~~l~~l~~~~~~~---------l~-----~~~~~l~~~l~~~l~~---~---~~~vr~~a~~ 206 (927)
++ ..++-|+..+.++++.+++. |. .+...++..+++.+.. . +++|-..++.
T Consensus 247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~ 326 (1010)
T KOG1991|consen 247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLN 326 (1010)
T ss_pred ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 22 36788999999999887641 21 2345555555555432 1 5566666666
Q ss_pred HHHHHHHhhCCCchhHHhHHhhHHHHHHH-HHHHH--hcC-------Ch-hHH--------------HHHHHHHHHHHcc
Q 002400 207 ATVNFIMNCLPSLGEKERFLDLLPLMMRT-LTEAL--NKG-------NE-SSA--------------QEALELLIELAAT 261 (927)
Q Consensus 207 ~l~~l~~~~~~~~~~~~~~~~~~p~ll~~-l~~~l--~~~-------~~-~~~--------------~~a~~~l~~l~~~ 261 (927)
.+..++ . ....++.+.+.+..+++. +..++ ++. |+ +-. ..+..++..++..
T Consensus 327 fl~~~V-s---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K 402 (1010)
T KOG1991|consen 327 FLEQCV-S---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK 402 (1010)
T ss_pred HHHHhc-c---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence 555555 1 111223333333322221 11111 111 11 111 2333444444432
Q ss_pred CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH--HHHhhHHH-HHHHHHhccCCCCHH
Q 002400 262 EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK--VMIKNLDQ-VVSMVLNSFQDPHPR 338 (927)
Q Consensus 262 ~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~--~~~~~l~~-l~~~l~~~l~d~~~~ 338 (927)
. =+..++.+++++.+++.. +-.......+.+.+++|+..+|++++...+ .++..+.. +++++++.++++-..
T Consensus 403 R---~ke~l~k~l~F~~~Il~~--~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 403 R---GKETLPKILSFIVDILTR--YKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred c---chhhhhhHHHHHHHHHHh--hcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 2 123456677776655420 000112346799999999999999975432 23344443 568899999999999
Q ss_pred HHHHHHHHHHHhH-hhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC--ccccCchHHHHHHHHH
Q 002400 339 VRWAAINAIGQLS-TDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP--DILTPYLDGIVSKLLV 415 (927)
Q Consensus 339 vr~~a~~~l~~~~-~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~~~~~l~~l~~~L~~ 415 (927)
.|..|||.+++++ ..+.. ...+.+++....+++.+.++-.||..|+.||..|+.+... +.++++++++|+.|++
T Consensus 478 Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred HHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH
Confidence 9999999999999 44543 3467788899999998327889999999999999988753 3478999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Q 002400 416 LLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAI 457 (927)
Q Consensus 416 ~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~ 457 (927)
+.+...... ...++..++...++++.||...+...|...
T Consensus 555 L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~ 593 (1010)
T KOG1991|consen 555 LSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAET 593 (1010)
T ss_pred HHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 988766543 345677788888888999887776665543
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.7e-12 Score=132.56 Aligned_cols=481 Identities=17% Similarity=0.161 Sum_probs=311.9
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
++..+++-..|.+++..+.+++-+.+....+|+..+++.++.+++|++.+||.-||..+-.++.-...++ -.|++.++.
T Consensus 50 d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFd 128 (675)
T KOG0212|consen 50 DYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFD 128 (675)
T ss_pred HhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHH
Confidence 5566777777889999999988877665556999999999999999999999999999999988776555 578999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc-cCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
.+.+...| .+..||..| ..+.++++....+.- .=.++.+++.|-.-+...++..|...+..|..+-..-+-+|..|+
T Consensus 129 vL~klsaD-sd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl 206 (675)
T KOG0212|consen 129 VLCKLSAD-SDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL 206 (675)
T ss_pred HHHHHhcC-CccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc
Confidence 99999999 888887654 566666655432211 336889999998888888999999999999998877777889999
Q ss_pred HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 002400 448 DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCK 527 (927)
Q Consensus 448 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (927)
+.+++.|++.+.+ +...+|..+=.+++.+-..+..+--.-..+++++.+..-.. +.+..++..++..+..+.+
T Consensus 207 ~~~ldGLf~~LsD----~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~---ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 207 PSLLDGLFNMLSD----SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ---SSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred hHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc---CCcHHHHHHHHHHHHHHhc
Confidence 9999999999876 44567766666777776655422111122344454443111 1223466777888899999
Q ss_pred HhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHH---HHHHHH
Q 002400 528 CLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNM---LCCYAD 604 (927)
Q Consensus 528 ~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~---l~~l~~ 604 (927)
..|.++.+|++.++..++.++...+.. .. |..|... +..+..
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~----------------~i-------------------~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEM----------------SI-------------------KEYAQMVNGLLLKLVS 324 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccc----------------cH-------------------HHHHHHHHHHHHHHHh
Confidence 999999999999999999998653221 00 1111111 111111
Q ss_pred H--hcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcc
Q 002400 605 E--LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHK 682 (927)
Q Consensus 605 ~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 682 (927)
. .+.. --+..+++.+.+.+.+. ..+-|.++..-+..+.+.. +..+-...+.+.+.|++.+.+
T Consensus 325 ~~~~~~~--id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~-------------p~ql~~h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 325 SERLKEE--IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKA-------------PGQLLVHNDSIFLTLLKTLSD 388 (675)
T ss_pred hhhhccc--cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhC-------------cchhhhhccHHHHHHHHhhcC
Confidence 1 1112 12457788888888875 6778888888888887653 223555667778888888755
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHH
Q 002400 683 EPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 683 e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~ 762 (927)
. +..+-..++..++.++..-.+ +++.+++..+++....+..-++..+..-+..++
T Consensus 389 ~----------------------sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 389 R----------------------SDEVVLLALSLLASICSSSNS---PNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred c----------------------hhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 3 345555566666666654322 244556666666666555555555566666666
Q ss_pred hhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHH
Q 002400 763 EFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVH 842 (927)
Q Consensus 763 ~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~ 842 (927)
.... ...+...+..++... ++-......+.++..++...|+...+- .-|..+ ..+|....|
T Consensus 444 ~lL~------aE~IYr~~a~ILe~e-----~nl~FAstMV~~Ln~iLlTStELf~LR----~~Lk~l----sn~es~~lF 504 (675)
T KOG0212|consen 444 LLLN------AERIYRSIADILERE-----ENLKFASTMVQALNTILLTSTELFQLR----NKLKDL----SNEESQNLF 504 (675)
T ss_pred HHhC------HHHHHHHHHHHHhcc-----ccchHHHHHHHHHHhhhcccHHHHHHH----HHHHhc----cChhhhHHH
Confidence 5432 122344444444432 233455556666666666554432111 112222 124445555
Q ss_pred HHHHHHHhccCCcc-----cCCCCCChhHHHHHHHHH
Q 002400 843 AQLCSMVERSDGEI-----LGPNHQYLPKIVTIFAEV 874 (927)
Q Consensus 843 ~~l~~l~~~~~~~~-----~~~~~~~~~~i~~~~~~~ 874 (927)
.||..---.+|-.+ +..+|+|...+++.|++.
T Consensus 505 ~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~ 541 (675)
T KOG0212|consen 505 CCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADV 541 (675)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 65554442332222 234566777777776664
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.7e-08 Score=114.55 Aligned_cols=749 Identities=14% Similarity=0.120 Sum_probs=401.6
Q ss_pred HHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 002400 55 FALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAA 133 (927)
Q Consensus 55 ~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~ 133 (927)
++..|...+.. +.+..++..+.-.|...+... ...-|. ....++.+...+.-++. +.|.+|..+.+++..+..
T Consensus 94 ~~~~l~~~~~~~stn~svlr~~iscL~~lLraQ--d~~aW~--~~~t~~~~~~il~~~~h--~~pkvRk~a~~~i~~VL~ 167 (1176)
T KOG1248|consen 94 TLNILAPFLTAESTNGSVLRLAISCLEDLLRAQ--DASAWS--YSSTKTELFGILAFAAH--KKPKVRKAAQRGIAAVLK 167 (1176)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHc--chhhhc--cccHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHc
Confidence 34555555554 677888888888888888765 345598 45566666555544444 478999999999998865
Q ss_pred cc--CCCCCccchHHHHHHHh---cC----CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHH
Q 002400 134 SV--LPDGDWPELIPFIFQCL---VT----FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAA 204 (927)
Q Consensus 134 ~~--~~~~~w~~ll~~l~~~l---~s----~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a 204 (927)
.- .|...-|..+.....|+ .+ .........+.+|..++...|.. .++.+...++..+...+..++..+
T Consensus 168 ~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~---li~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 168 GPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP---LIKSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHhhcccchHHHHHHH
Confidence 21 12223444433333232 21 11112223444444444443333 467788888888888889999999
Q ss_pred HHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHH-H---HHH-HHHHHHHccCcHHHHHHHHHHHHHHHH
Q 002400 205 LEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSA-Q---EAL-ELLIELAATEPRFLRKQLVDVVGSMLQ 279 (927)
Q Consensus 205 ~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~-~---~a~-~~l~~l~~~~~~~~~~~l~~ll~~ll~ 279 (927)
+.|+..++ ..-+. ..-..+.-.++..+..+--+.++... . .++ +.-..++...+......++.+++.+..
T Consensus 245 ~q~l~~lf-~~~~~----~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t 319 (1176)
T KOG1248|consen 245 LQCLHSLF-KKHPT----ALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFT 319 (1176)
T ss_pred HHHHHHHH-hcCCC----cchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHH
Confidence 99999998 43322 11122333344444433212111111 0 111 122233334445555666777776663
Q ss_pred HhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHH-HHhccCCCCHHHHHHHHHHHHHhHhhhchhH
Q 002400 280 VAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSM-VLNSFQDPHPRVRWAAINAIGQLSTDLGPEL 358 (927)
Q Consensus 280 ~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 358 (927)
++.+.....-.++-.++..+.+.+.. +.+.+-.. +-..|.-+...+-..++..+..+.+.+|+..
T Consensus 320 ----------~~~s~~~e~~q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s 385 (1176)
T KOG1248|consen 320 ----------ILESLIEELVQAASQSLKEILKESVT----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELS 385 (1176)
T ss_pred ----------HHhcccHHHHHHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33344555666677777777766554 12222222 3334444555566667777777777777633
Q ss_pred HHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc-------------cCchHHHHHHHHHHhcCCCh---
Q 002400 359 QTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL-------------TPYLDGIVSKLLVLLQNGKQ--- 422 (927)
Q Consensus 359 ~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-------------~~~l~~l~~~L~~~l~~~~~--- 422 (927)
.+++-..+..+...=.+ ++..-+...-.+++..+..++++.+ ..--..+++.|-......+-
T Consensus 386 -~~~l~~~L~~l~~lr~~-~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F 463 (1176)
T KOG1248|consen 386 -GPELTKTLEGLCDLRAS-PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFF 463 (1176)
T ss_pred -CHHHHHHHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHH
Confidence 34444555555442222 2222222233344444433332211 00001122222111111110
Q ss_pred ---------------------hHHHHHHHHHHHHH-----HH--hhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHH
Q 002400 423 ---------------------MVQEGALTALASVA-----DS--SQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSM 474 (927)
Q Consensus 423 ---------------------~v~~~a~~al~~l~-----~~--~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~ 474 (927)
......+.++..-. .- .+-+...-+..+.|.|...+.. ...+|....
T Consensus 464 ~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-----~~elr~~Ic 538 (1176)
T KOG1248|consen 464 TEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-----RPELRETIC 538 (1176)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-----chHhHHHHH
Confidence 00000111111100 00 0112222344555555555543 235666666
Q ss_pred HHHHHHHHhh--------CcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhc-cccccchhhhHHHHH
Q 002400 475 ECISLVGMAV--------GKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLG-QEFIPYMSVVMPPLL 545 (927)
Q Consensus 475 ~~l~~l~~~~--------~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll 545 (927)
..+..+.... +.+....++...|+.+.++......... +++.+......... ..|..--.++...+.
T Consensus 539 ~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~----~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~ 614 (1176)
T KOG1248|consen 539 NSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR----KILASRSTVLEIIRVDYFTVTPTDVVGSLK 614 (1176)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc----ccHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 6666666442 1234556677777777775544222111 11111111111111 112222222333333
Q ss_pred HHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhh
Q 002400 546 QSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL 625 (927)
Q Consensus 546 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 625 (927)
+.+...... .++.. .. .....-++.+..++..... .++..++ .+.+..
T Consensus 615 ~s~~e~as~-------------~~~s~------------~~---~~~~slLdl~~~~a~~~~e---~~vs~l~-~v~~~~ 662 (1176)
T KOG1248|consen 615 DSAGELASD-------------LDESV------------AS---FKTLSLLDLLIALAPVQTE---SQVSKLF-TVDPEF 662 (1176)
T ss_pred HHHHhHhcc-------------chhhh------------hh---HHHHHHHHHHHhhhccccc---hhHHHHH-HhhHHh
Confidence 333211000 00100 00 0011122333333333222 2333333 444555
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCC
Q 002400 626 KFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDK 705 (927)
Q Consensus 626 ~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~ 705 (927)
..+.+..+++.+..+|..++.. +....+..+..+.+.+.+...+.. .
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-----------~s~~~~~~q~i~~I~n~L~ds~qs----------------------~ 709 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-----------PSGEGLVEQRIDDIFNSLLDSFQS----------------------S 709 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-----------CchhhHHHHHHHHHHHHHHHHHhc----------------------c
Confidence 5555789999999999999765 111234566666777777776654 3
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHH--hhcC----CCcHHHHHHHHHH
Q 002400 706 TAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCA--EFGG----SVFKPLVGEALSR 779 (927)
Q Consensus 706 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~--~~~~----~~~~~~~~~il~~ 779 (927)
+...|...+.++..+.+.++.....+++..+|.++=.+++.|...|++|..+|-.+. ...- +.....+.+.+..
T Consensus 710 ~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 710 SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 467788899999999999997777788888888777778889999999988877777 3321 2223344444454
Q ss_pred HHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcc
Q 002400 780 LDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI---DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEI 856 (927)
Q Consensus 780 L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~---~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~ 856 (927)
+...+... ...++-.-+.+++.++......+ .+++++..+..+|.- +..+-+..++.++-.++...+..+
T Consensus 790 Isagl~gd------~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 790 ISAGLVGD------STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHhhhccc------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHH
Confidence 44443322 12222122778888888776655 377788888888765 455778899999999998887777
Q ss_pred cCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHh
Q 002400 857 LGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSI 924 (927)
Q Consensus 857 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 924 (927)
+.+ |.+.++.-+...++ +.+...|.++..++..+...|..+.++.++ |.+.+.-|.++
T Consensus 863 l~~---~~~~LL~sll~ls~----d~k~~~r~Kvr~LlekLirkfg~~eLe~~~---pee~~klL~nI 920 (1176)
T KOG1248|consen 863 LSP---HLEELLPSLLALSH----DHKIKVRKKVRLLLEKLIRKFGAEELESFL---PEEDMKLLTNI 920 (1176)
T ss_pred Hhh---hHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhCHHHHHhhC---HHHHHHHHHHH
Confidence 665 88999988888665 346789999999999999999855455543 46666555543
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.64 E-value=1.3e-11 Score=140.50 Aligned_cols=485 Identities=13% Similarity=0.108 Sum_probs=287.8
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHH
Q 002400 190 SKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQ 269 (927)
Q Consensus 190 ~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 269 (927)
.+.|++.+..-|..|++.+...+... .....+++.+++ ++.+.+.+.++.+.-+|...++..|...--.
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt~G-------~DvS~LF~dVvk----~~~S~d~elKKLvYLYL~~ya~~~pelalLa 106 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMTMG-------RDVSYLFVDVVK----LAPSTDLELKKLVYLYVLSTARLQPEKALLA 106 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCC-------CCchHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccChHHHHHH
Confidence 34455667777778887766655121 123455665555 4456788888888888888887665543222
Q ss_pred HHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002400 270 LVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQ 349 (927)
Q Consensus 270 l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 349 (927)
++.+ .+-++|+++.+|..|+.+++.+.. ...++.+++.+.+++.|++|.||.+|+.|+.+
T Consensus 107 INtl--------------~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~K 166 (746)
T PTZ00429 107 VNTF--------------LQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGK 166 (746)
T ss_pred HHHH--------------HHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222 244568899999999999988754 24566788889999999999999999999999
Q ss_pred hHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHH
Q 002400 350 LSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGAL 429 (927)
Q Consensus 350 ~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~ 429 (927)
+....+ +. -....+++.+.+.+.| +++.|..+|..+|..+.+..+. .+ ......+..++..+.+.+...+..++
T Consensus 167 ly~~~p-el--v~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~-~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL 240 (746)
T PTZ00429 167 LFHDDM-QL--FYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSE-KI-ESSNEWVNRLVYHLPECNEWGQLYIL 240 (746)
T ss_pred HHhhCc-cc--ccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCch-hh-HHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 876433 22 1123456777778888 9999999999999999876542 22 23445566667777666666676666
Q ss_pred HHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCC
Q 002400 430 TALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQME 509 (927)
Q Consensus 430 ~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 509 (927)
..+.... +.+ ......++..+...++.. +..+.-.|+.++-.+.....++........+-..++.+.+
T Consensus 241 ~lL~~y~---P~~-~~e~~~il~~l~~~Lq~~----N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s---- 308 (746)
T PTZ00429 241 ELLAAQR---PSD-KESAETLLTRVLPRMSHQ----NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR---- 308 (746)
T ss_pred HHHHhcC---CCC-cHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC----
Confidence 6664421 111 222345566666655542 2345434444443333222222222222233333444422
Q ss_pred CCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhH
Q 002400 510 ADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVL 589 (927)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (927)
.+..++-.+++.+..+....+.-|.+++..+ +-.. .++ .
T Consensus 309 s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F----f~~~-~Dp------------------------------------~ 347 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIFPNLLRTNLDSF----YVRY-SDP------------------------------------P 347 (746)
T ss_pred CCccHHHHHHHHHHHHHHHCHHHHHHHHHhh----hccc-CCc------------------------------------H
Confidence 2234555666666666655443333322111 0000 000 0
Q ss_pred HhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002400 590 EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLT 669 (927)
Q Consensus 590 ~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (927)
.-|...+++|..++.. .. +..++..+..+..+ .+.++++.++.+++.+.... ....
T Consensus 348 yIK~~KLeIL~~Lane--~N----v~~IL~EL~eYa~d-~D~ef~r~aIrAIg~lA~k~-----------------~~~a 403 (746)
T PTZ00429 348 FVKLEKLRLLLKLVTP--SV----APEILKELAEYASG-VDMVFVVEVVRAIASLAIKV-----------------DSVA 403 (746)
T ss_pred HHHHHHHHHHHHHcCc--cc----HHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHhC-----------------hHHH
Confidence 1256677777766532 22 45666777777765 47789999999999886542 2334
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHhhc-----------------CCCCChhhHHHHHHHHHHHHHHhhhhhhhhH
Q 002400 670 DYIIPALVEALHKEPEIDICASMLDALNESIQ-----------------GKDKTAEERRIAICIFDDVMEHCREAALKYY 732 (927)
Q Consensus 670 ~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~-----------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 732 (927)
+.++..|++.+....+ +...++..+..+++ ..-..+..|...++++|++++..+. .
T Consensus 404 ~~cV~~Ll~ll~~~~~--~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a 476 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE--LLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----G 476 (746)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----H
Confidence 4455555555543222 22333444444433 0113456777889999998876543 3
Q ss_pred HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHH
Q 002400 733 DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVS 803 (927)
Q Consensus 733 ~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~ 803 (927)
+.++..++..+.++++.||.....+...+.-..+....+.+..++..+. .+. ++..+||.|.-
T Consensus 477 ~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t---~~~-----~d~DVRDRA~~ 539 (746)
T PTZ00429 477 KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVT---THS-----DDPDVRDRAFA 539 (746)
T ss_pred HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH---hcC-----CChhHHHHHHH
Confidence 4566666677778889999998888888887766544444433333322 222 25668888763
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.63 E-value=6.7e-12 Score=144.51 Aligned_cols=511 Identities=15% Similarity=0.168 Sum_probs=327.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCccccccccccC
Q 002400 20 AHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA 97 (927)
Q Consensus 20 ~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~ 97 (927)
+++.++++... .+...++.+-..+-.+...-.+ +-..+.+++.. +.+...|+++-+++.......
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~-~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----------- 73 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYD-ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED----------- 73 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-----------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-----------
Confidence 45555555544 4666777777666554332111 11233444432 889999999999988776554
Q ss_pred HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH
Q 002400 98 PSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV 177 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 177 (927)
++..-.+-+.+.+-|.++ ++.+|..+-.+++.+... .-.+.+++.+.+++.++++.+|..|+.++..+....++.
T Consensus 74 ~~~~~l~~n~l~kdl~~~-n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 74 PELLILIINSLQKDLNSP-NPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp HHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred hhHHHHHHHHHHHhhcCC-CHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence 334444566666777764 889999988999888743 345788999999999999999999999999999987775
Q ss_pred HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002400 178 LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIE 257 (927)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~ 257 (927)
+... +++.+.+.+.|+++.|+.+|+.++..+- . + ...+..+++.+.+.+.+.+...++-.....+.++..
T Consensus 149 ~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i~-~---~---~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 149 VEDE---LIPKLKQLLSDKDPSVVSAALSLLSEIK-C---N---DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp HHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHHH-C---T---HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTT
T ss_pred HHHH---HHHHHhhhccCCcchhHHHHHHHHHHHc-c---C---cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHh
Confidence 4332 6888888889999999999999988881 1 1 123337888888888888777788777788888877
Q ss_pred HHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCH
Q 002400 258 LAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHP 337 (927)
Q Consensus 258 l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 337 (927)
++...+..... ..+++.+. ..+++.++.++..++.++..+..... .+..+++.+...+.++++
T Consensus 219 ~~~~~~~~~~~--~~~i~~l~----------~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~ 281 (526)
T PF01602_consen 219 YAPMEPEDADK--NRIIEPLL----------NLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDP 281 (526)
T ss_dssp STSSSHHHHHH--HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSH
T ss_pred cccCChhhhhH--HHHHHHHH----------HHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccc
Confidence 76655444411 23333333 23335678888888888876655322 466788889999999999
Q ss_pred HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc-CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHH
Q 002400 338 RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD-DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVL 416 (927)
Q Consensus 338 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~-~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 416 (927)
.+|..++.++..++....+.+ ......+ ..+. + ++..+|..+...+..++... ....+++.|...
T Consensus 282 nvr~~~L~~L~~l~~~~~~~v-----~~~~~~~-~~l~~~-~d~~Ir~~~l~lL~~l~~~~-------n~~~Il~eL~~~ 347 (526)
T PF01602_consen 282 NVRYIALDSLSQLAQSNPPAV-----FNQSLIL-FFLLYD-DDPSIRKKALDLLYKLANES-------NVKEILDELLKY 347 (526)
T ss_dssp HHHHHHHHHHHHHCCHCHHHH-----GTHHHHH-HHHHCS-SSHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHH
T ss_pred hhehhHHHHHHHhhcccchhh-----hhhhhhh-heecCC-CChhHHHHHHHHHhhccccc-------chhhHHHHHHHH
Confidence 999999999999987653322 1222222 2333 5 67899999999998887542 345678888888
Q ss_pred h-cCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHH
Q 002400 417 L-QNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 495 (927)
Q Consensus 417 l-~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~ 495 (927)
+ +..+..++..++.+|+.++.........|++.++.. +... ...+...++..+..+..... +.....
T Consensus 348 l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~l----l~~~----~~~~~~~~~~~i~~ll~~~~-~~~~~~--- 415 (526)
T PF01602_consen 348 LSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKL----LEIS----GDYVSNEIINVIRDLLSNNP-ELREKI--- 415 (526)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHH----HHCT----GGGCHCHHHHHHHHHHHHST-TTHHHH---
T ss_pred HHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHh----hhhc----cccccchHHHHHHHHhhcCh-hhhHHH---
Confidence 8 444788999999999999988866655555555444 4431 12345555666666665433 322223
Q ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhh
Q 002400 496 VMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTI 575 (927)
Q Consensus 496 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (927)
+..+...... . .+...+..++-++|..+...++ .. ..+.++..+.+..... .
T Consensus 416 -l~~L~~~l~~-~-~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~-----------------~------ 467 (526)
T PF01602_consen 416 -LKKLIELLED-I-SSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEE-----------------S------ 467 (526)
T ss_dssp -HHHHHHHHTS-S-SSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTS-----------------H------
T ss_pred -HHHHHHHHHH-h-hHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccc-----------------c------
Confidence 3333332222 1 1223445555556666555444 11 4455556555555321 0
Q ss_pred ccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhc-ccCcHHHHHHHHHHHHHH
Q 002400 576 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK-FYFHEEVRKAAVSAMPEL 644 (927)
Q Consensus 576 ~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vR~~a~~~l~~l 644 (927)
.+.|...+.++..+....+.. ...+.+.+.+.++.. ++.+.+||..|...+.-+
T Consensus 468 -------------~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 468 -------------PEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp -------------HHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 122455555566555544321 112466667777766 245899999998876544
No 37
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=6.5e-12 Score=129.79 Aligned_cols=411 Identities=14% Similarity=0.155 Sum_probs=280.4
Q ss_pred hhhhCCcchhHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 288 PGFLAAPEWQKHHAVLIALAQIAEGCSK-VMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 288 ~~~l~~~~~~~r~aal~al~~i~~~~~~-~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
...+.|.-+..|.||..-+..+..++-. .-...+.++++.+... ...++..-|..++..+...+-.++.+. ..|...
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~-~~Y~~~ 84 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD-AGYLEK 84 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc-HHHHHH
Confidence 3556677899999999999998886543 1224566777755543 455666667788888888887788776 459999
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh-hhh-
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-GQF- 443 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~- 443 (927)
++|.++.++.| ++..||-.||.++.++++.++.+ +.+|.+.+...+.++..+.+..||..+ +.+-.+.+..- +.-
T Consensus 85 iv~Pv~~cf~D-~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 85 IVPPVLNCFSD-QDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESAS 161 (675)
T ss_pred hhHHHHHhccC-ccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccc
Confidence 99999999999 99999999999999999999866 458999999999999999888888765 44444433222 111
Q ss_pred HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 002400 444 QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWA 523 (927)
Q Consensus 444 ~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 523 (927)
.=.++.++|.|...+-.. +...|...+..+..+-..-+ -.|-.|.+.+++-+.++.+. ..+.++.-.-.+++
T Consensus 162 tFsL~~~ipLL~eriy~~----n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD---~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVI----NPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSD---SSDEVRTLTDTLLS 233 (675)
T ss_pred ccCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcC---CcHHHHHHHHHHHH
Confidence 225678899998887653 44566666777766655444 56888999999988886653 22334433333333
Q ss_pred HHHHHhcccccc-chhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHH
Q 002400 524 RLCKCLGQEFIP-YMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCY 602 (927)
Q Consensus 524 ~l~~~~~~~~~~-~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l 602 (927)
++......+=.. -.+..++.+...+ .++....+..|+..+..+
T Consensus 234 ~fL~eI~s~P~s~d~~~~i~vlv~~l------------------------------------~ss~~~iq~~al~Wi~ef 277 (675)
T KOG0212|consen 234 EFLAEIRSSPSSMDYDDMINVLVPHL------------------------------------QSSEPEIQLKALTWIQEF 277 (675)
T ss_pred HHHHHHhcCccccCcccchhhccccc------------------------------------cCCcHHHHHHHHHHHHHH
Confidence 333222111000 0111111111111 111122345678888889
Q ss_pred HHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcc
Q 002400 603 ADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHK 682 (927)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 682 (927)
+...|..+.+|...++..++|++.+....+++..+...-+.+.+.+..... +.+ --+..++..+.+.+..
T Consensus 278 V~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~-----~~~-----id~~~ii~vl~~~l~~ 347 (675)
T KOG0212|consen 278 VKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL-----KEE-----IDYGSIIEVLTKYLSD 347 (675)
T ss_pred hcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh-----ccc-----cchHHHHHHHHHHhhc
Confidence 998999999999999999999999864446777777766666554422111 000 0122455555555554
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHH
Q 002400 683 EPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 683 e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~ 762 (927)
+ ..+.|..++.-+--+....|.....+...+.+.+++.+.|++..|-.-+...+..++
T Consensus 348 ~----------------------~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 348 D----------------------REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred c----------------------hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 4 477888899888899999999999999999999999999999999888888888888
Q ss_pred hhcCC-CcHHHHHHHHH
Q 002400 763 EFGGS-VFKPLVGEALS 778 (927)
Q Consensus 763 ~~~~~-~~~~~~~~il~ 778 (927)
..... .+.+|..++++
T Consensus 406 ~s~~~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 406 SSSNSPNLRKFLLSLLE 422 (675)
T ss_pred cCcccccHHHHHHHHHH
Confidence 76543 33444433333
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.3e-13 Score=142.10 Aligned_cols=357 Identities=18% Similarity=0.198 Sum_probs=253.5
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhccC-CC---CCccchHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHH
Q 002400 105 KSVLLVQLQNETNKSIIKKICDAVSELAASVL-PD---GDWPELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLI 179 (927)
Q Consensus 105 k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~-~~---~~w~~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~ 179 (927)
-...++.+.++ ++..+......+-.+...+- |. ..|..++|.+++++. +.++..+..|.++|..++..-.++-.
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 45555666655 55556666666666555432 10 144578999999986 56689999999999999987665433
Q ss_pred HhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhH--HHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 002400 180 AHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLL--PLMMRTLTEALNKGNE-SSAQEALELL 255 (927)
Q Consensus 180 ~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--p~ll~~l~~~l~~~~~-~~~~~a~~~l 255 (927)
..+ ...+|.|.+++.+++..|+..|+.+|++++ -. ...+..++ ...+..+..++...+. .....+...+
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIa-gd------s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIA-GD------SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccc-cC------ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 333 356888999999999999999999999998 21 12232222 1223333333333333 4567788889
Q ss_pred HHHHccC-cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccC
Q 002400 256 IELAATE-PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQ 333 (927)
Q Consensus 256 ~~l~~~~-~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~ 333 (927)
..++... |.---..+..++|.+. .++.+.|..+..-|+++++.++++..+.+.-.++ .++|.++..|.
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~----------~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~ 289 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALL----------RLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG 289 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc
Confidence 9999764 3222233455666555 5556788999999999999999998886665554 57899999999
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchH-HHHHH
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD-GIVSK 412 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~l~~~ 412 (927)
.+++.|+..|+.++|.++.......+.-.-...+|.+...+...+...++..|||++.+++.... +.++..++ .+++.
T Consensus 290 ~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-~qiqaVida~l~p~ 368 (514)
T KOG0166|consen 290 HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-EQIQAVIDANLIPV 368 (514)
T ss_pred CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH-HHHHHHHHcccHHH
Confidence 99999999999999998774333222234567899999998853667799999999999988654 33444333 78899
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHH--HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhh
Q 002400 413 LLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYD--AVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAV 484 (927)
Q Consensus 413 L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~--~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~ 484 (927)
|+.++++...++|..|.++|+++......+-.+|+- .+++.+..++.- .| ..+-..+++++..+-...
T Consensus 369 Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D---~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 369 LINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD---VKIILVALDGLENILKVG 438 (514)
T ss_pred HHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC---hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998777766666663 578888888833 22 234556777777766544
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.59 E-value=3.5e-10 Score=128.91 Aligned_cols=505 Identities=13% Similarity=0.105 Sum_probs=313.8
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH
Q 002400 101 QANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA 180 (927)
Q Consensus 101 ~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (927)
..+||..| .+......+..+..+|+.+... ..-..+++.++.++++++...|+.++..+....+.-++.
T Consensus 34 ~~ELr~~L----~s~~~~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--- 102 (746)
T PTZ00429 34 GAELQNDL----NGTDSYRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--- 102 (746)
T ss_pred HHHHHHHH----HCCCHHHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH---
Confidence 34555554 3332334456666666666543 345679999999999999999999999888887766553
Q ss_pred hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 002400 181 HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAA 260 (927)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (927)
.--.++.|.+-+.|+++.+|..|+++++.+- ...+++.++..+.+++.+.++-+++.|.-++..+..
T Consensus 103 -alLaINtl~KDl~d~Np~IRaLALRtLs~Ir------------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 103 -ALLAVNTFLQDTTNSSPVVRALAVRTMMCIR------------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 2235778888899999999999999988876 234667777778888888899999999888888776
Q ss_pred cCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHH
Q 002400 261 TEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVR 340 (927)
Q Consensus 261 ~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr 340 (927)
..|..+.. ..+++.+. +++.|.+..+...|+.+|..+.+..++.+ ......+..++..+.+-++.-+
T Consensus 170 ~~pelv~~--~~~~~~L~----------~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Q 236 (746)
T PTZ00429 170 DDMQLFYQ--QDFKKDLV----------ELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQ 236 (746)
T ss_pred hCcccccc--cchHHHHH----------HHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHH
Confidence 65544321 12223222 45568899999999999999987765433 2233445556666666566555
Q ss_pred HHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC
Q 002400 341 WAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG 420 (927)
Q Consensus 341 ~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~ 420 (927)
-..+.++..+ . |.- ......++..+...+.+ .++.|.-.|+.++-.+...+.++.+...+..+-..++.+ .+.
T Consensus 237 i~IL~lL~~y---~-P~~-~~e~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss 309 (746)
T PTZ00429 237 LYILELLAAQ---R-PSD-KESAETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRR 309 (746)
T ss_pred HHHHHHHHhc---C-CCC-cHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCC
Confidence 5555555432 2 221 23345788888888998 889999999998887765543232222233333444544 456
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHH
Q 002400 421 KQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 500 (927)
Q Consensus 421 ~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 500 (927)
++.+|-.++..|..++...+.-|.++++.+ ....+|+. .+|...++.+..++.. +.+...+.++..+.
T Consensus 310 ~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F-------f~~~~Dp~--yIK~~KLeIL~~Lane---~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 310 DAETQYIVCKNIHALLVIFPNLLRTNLDSF-------YVRYSDPP--FVKLEKLRLLLKLVTP---SVAPEILKELAEYA 377 (746)
T ss_pred CccHHHHHHHHHHHHHHHCHHHHHHHHHhh-------hcccCCcH--HHHHHHHHHHHHHcCc---ccHHHHHHHHHHHh
Confidence 678998999899888877665555543332 22223332 3787788888877643 33444444444433
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCc
Q 002400 501 MSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDK 580 (927)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (927)
. +.+..++..++.+++.++..++. ....++..|++.+....+ +
T Consensus 378 ~-------d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~--------------------~------ 420 (746)
T PTZ00429 378 S-------GVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPE--------------------L------ 420 (746)
T ss_pred h-------cCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCch--------------------h------
Confidence 2 23445778888899999876543 455666667666643211 0
Q ss_pred eeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhh--cccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002400 581 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL--KFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQ 658 (927)
Q Consensus 581 ~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~ 658 (927)
...++..+..+....+..+ +++.+...+ ..-.++..|.+.+=.+|......
T Consensus 421 -----------v~e~i~vik~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I---------- 473 (746)
T PTZ00429 421 -----------LPQVVTAAKDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI---------- 473 (746)
T ss_pred -----------HHHHHHHHHHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH----------
Confidence 1234555666666555432 223333221 11224566666666777664432
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHH
Q 002400 659 GRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPF 738 (927)
Q Consensus 659 ~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~ 738 (927)
.. ...++..+++.+..| +..+|...+.+...+.-..++... ..+..
T Consensus 474 -------~~-a~~~L~~~i~~f~~E----------------------~~~VqlqlLta~vKlfl~~p~~~~----~~l~~ 519 (746)
T PTZ00429 474 -------EN-GKDIIQRFIDTIMEH----------------------EQRVQLAILSAAVKMFLRDPQGME----PQLNR 519 (746)
T ss_pred -------hh-HHHHHHHHHhhhccC----------------------CHHHHHHHHHHHHHHHhcCcHHHH----HHHHH
Confidence 11 223444444444443 366777777777777777765433 34444
Q ss_pred HHHH-cc-CCChhHHhhHhHHHH
Q 002400 739 LLEA-CN-DKHPDVRQAAVYGIG 759 (927)
Q Consensus 739 l~~~-l~-d~~~~vr~~a~~~lg 759 (927)
++.. .. +.|+++|+.|..-..
T Consensus 520 vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 520 VLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHHHhcCCChhHHHHHHHHHH
Confidence 4433 33 578899999865443
No 40
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=7.1e-08 Score=109.74 Aligned_cols=365 Identities=13% Similarity=0.122 Sum_probs=207.2
Q ss_pred HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC--------CccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 363 HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT--------PDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 363 ~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~--------~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
+..+.|.+...+.. .+..|...|.+|..+++... .+.+..|....++.+++.-......-+ ..+.+...
T Consensus 516 F~~la~~l~~al~~--~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~ 592 (1176)
T KOG1248|consen 516 FTDLAPILGAALLK--RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRST 592 (1176)
T ss_pred HHHHHHHHHHHHhc--chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHH
Confidence 44455555555554 45888888888888887752 133455777788888887665544332 22333333
Q ss_pred HHHHhh-hhhHHhHHHHHHHHHHHHhcccCcchhhH----HHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCC
Q 002400 435 VADSSQ-GQFQKYYDAVMPYLKAILVNANDKSNRML----RAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQME 509 (927)
Q Consensus 435 l~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~~l----r~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 509 (927)
...... ..|..-...+...|...+.......+..+ +...+.-+..++.....+.+..+. .+++...+ .
T Consensus 593 ~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~------~ 665 (1176)
T KOG1248|consen 593 VLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFEN------S 665 (1176)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhc------c
Confidence 222222 12222222333333333322111111111 122233333333332222222221 22222111 0
Q ss_pred CCCcchHHHHHHHHHHHHHhcccc----ccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeec
Q 002400 510 ADDPTTSYMLQAWARLCKCLGQEF----IPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIK 585 (927)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~~----~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (927)
.+..++.-.+..+..++.. ... ...+..|.+.+.+.++...
T Consensus 666 ~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs~~--------------------------------- 710 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQSSS--------------------------------- 710 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhccc---------------------------------
Confidence 1122445556666666655 222 2333444444444443211
Q ss_pred hhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 002400 586 TSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYV 665 (927)
Q Consensus 586 ~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 665 (927)
--.+..++.+|..+.+.++..+..++...++.++-...+ .+..-|+.|..+|-.+... ....+ .|.++ .
T Consensus 711 ---~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke-~n~~aR~~Af~lL~~i~~i-~~~~d----~g~e~--~ 779 (1176)
T KOG1248|consen 711 ---SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE-VNVKARRNAFALLVFIGAI-QSSLD----DGNEP--A 779 (1176)
T ss_pred ---hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc-ccHHHHhhHHHHHHHHHHH-Hhhhc----ccccc--h
Confidence 123567889999999999877888888888887766654 5888999999999998851 11111 12222 2
Q ss_pred HHHHHHHHHHHHHHHccCC----------------------hHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 002400 666 KQLTDYIIPALVEALHKEP----------------------EIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEH 723 (927)
Q Consensus 666 ~~~~~~il~~ll~~l~~e~----------------------d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~ 723 (927)
...++.+++.+...+.++. +.+....+++-+.-+ ..+.+.+++..|++++..++..
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~--L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLY--LASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHc
Confidence 3334444444444443332 222233333333333 4578899999999999999999
Q ss_pred hhhhhh-hhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcC-CCcHHHHHHHHHHHHHhhc
Q 002400 724 CREAAL-KYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGG-SVFKPLVGEALSRLDFVIR 785 (927)
Q Consensus 724 ~~~~~~-~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~~il~~L~~~l~ 785 (927)
++.... +|.+.++|.++..+++....+|...-..+-.+++..| +.+.+|++.-...+...+.
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIR 921 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHH
Confidence 987655 6999999999998888888999999899999998766 5777888766666665554
No 41
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.51 E-value=3.8e-12 Score=123.06 Aligned_cols=361 Identities=16% Similarity=0.180 Sum_probs=247.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC
Q 002400 57 LNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 57 ~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
+.|.+.+- +.+.+....|..-+|+.+++.+ -..+.+-....+...+++.|......-.+..++.++..|+....
T Consensus 74 p~lt~~l~-SdDie~q~qav~kFR~~LS~E~-----~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 74 PQLTQQLF-SDDIEQQLQAVYKFRKLLSKET-----SPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHhcccc-----CCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 33444332 5677777788889999998762 34566666677788888888655466778889999999998654
Q ss_pred CCC---CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhCCC--CHHHHHHHHHHHH
Q 002400 137 PDG---DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLGSN--NFDLRIAALEATV 209 (927)
Q Consensus 137 ~~~---~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~~--~~~vr~~a~~~l~ 209 (927)
... .=...+|.+++++.+++..+|+.++++|+.++...+.- .+|+ ...+.-++..+.++ +..+-..+...|.
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 321 12467999999999999999999999999998765431 1111 12233333444443 3456667888888
Q ss_pred HHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHH-HHHHHHHHhhccCchh
Q 002400 210 NFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVD-VVGSMLQVAEAEAVFP 288 (927)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~-ll~~ll~~~~~~~~i~ 288 (927)
++. +.-..+.++..+..-+| .+.+++.+.|+++...|+..+.-+...+..-+...+.. +.+.++
T Consensus 227 Nlc-RGknP~P~w~~isqalp----iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv---------- 291 (526)
T COG5064 227 NLC-RGKNPPPDWSNISQALP----ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV---------- 291 (526)
T ss_pred Hhh-CCCCCCCchHHHHHHHH----HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH----------
Confidence 888 54333334444455444 55555667899999999988887776544333333321 112233
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLL 367 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il 367 (927)
+++.+++-++.--|+..+|.+..|....-...+. -.++++...|.++...+|..|||+++.+...-...++.-.-..++
T Consensus 292 ElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nli 371 (526)
T COG5064 292 ELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLI 371 (526)
T ss_pred HHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccc
Confidence 5566777778888999999999886653222221 245566666888888999999999999877555555455566899
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCC--CccccCch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCT--PDILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~l--~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
|.|+..+.. -+..++..|||++.+....+- ++.+ .|+ +..+..|..+|.-.+.++-+.++.++..+....+.
T Consensus 372 PpLi~lls~-ae~k~kKEACWAisNatsgg~~~PD~i-ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 372 PPLIHLLSS-AEYKIKKEACWAISNATSGGLNRPDII-RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCchHH-HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 999999998 788999999999999876643 2322 233 24666777788877777888888998888765443
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.49 E-value=1.8e-10 Score=129.35 Aligned_cols=503 Identities=15% Similarity=0.144 Sum_probs=330.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 002400 55 FALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAAS 134 (927)
Q Consensus 55 ~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~ 134 (927)
.++.+.+.+ ....+++..++..+.++.... |.. ...++--..++.+.......+|.+....+..++..
T Consensus 122 lipf~~e~~--~~~dev~~~~a~~~~~~~~~v------~~~----~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 122 LIPFLTEAE--DDEDEVLLDLAEQLGTFLPDV------GGP----EYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhHHHHhc--cchhHHHHHHHHHhcccchhc------cch----hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555 567788888888888777554 322 22223333333333333667899999999888876
Q ss_pred cCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHh
Q 002400 135 VLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMN 214 (927)
Q Consensus 135 ~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 214 (927)
....+....+++.+..+..+..-..|..++.+++......++. .--..+.+.+.+..+|..+.||.++.+-++.+. .
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~--~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a-~ 266 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDD--AVKRELRPIVQSLCQDDTPMVRRAVASNLGNIA-K 266 (759)
T ss_pred cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChH--HHHHHHHHHHHhhccccchhhHHHHHhhhHHHH-H
Confidence 6554444445555555444433345667777777776665532 123467788888888999999999999999998 6
Q ss_pred hCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCc
Q 002400 215 CLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAP 294 (927)
Q Consensus 215 ~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~ 294 (927)
.+++ ......++..+.++..++.+.++..|++.+..+.+.-..-. .....+.+.++ +..++.
T Consensus 267 ~~~~-------~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~----------~~~~d~ 328 (759)
T KOG0211|consen 267 VLES-------EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLV----------QAVEDG 328 (759)
T ss_pred HHHH-------HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHH----------HHhcCh
Confidence 5532 11222233344444455566777888888877765421111 33344444444 455678
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHH-HHhHhhHHHHHHHh
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQ-TQFHHRLLPALVGA 373 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~il~~ll~~ 373 (927)
+|++|+........+....+. ...-...++.....++|..+.+|.++..-...++..+..... ....+.++|.+...
T Consensus 329 ~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 329 SWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred hHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 999999988877777665443 223345677888889999999999999999988887652211 22445568888888
Q ss_pred ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh-hhHHhHHHHHH
Q 002400 374 MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG-QFQKYYDAVMP 452 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~-~~~~~~~~i~~ 452 (927)
..| .+..||.+.+.....+....+.+ .-+..+.+.+...+++..+.|+...+..+..+-...+. ...-+-+..+|
T Consensus 407 v~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp 482 (759)
T KOG0211|consen 407 VLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLP 482 (759)
T ss_pred Hhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhh
Confidence 888 89999998888777776666533 23444556666677888889998888766444333322 23446667777
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHH-HHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcc
Q 002400 453 YLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM-EVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQ 531 (927)
Q Consensus 453 ~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (927)
.+...-.+ ..+.+|.+.++.+..++...|.+.|.+....++ ..+. +....++..+...+..++..+|.
T Consensus 483 ~i~el~~d----~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~-------d~v~~Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 483 AIVELAED----LLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLP-------DHVYSIREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhccc----hhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhh-------hhHHHHHHHHHHHhHHHHHHhCc
Confidence 77776332 368899999999999998888554544322222 1111 12346888899999999999994
Q ss_pred ccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccccc
Q 002400 532 EFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF 611 (927)
Q Consensus 532 ~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~ 611 (927)
.. +...++|.++.....+ . +.. |.+.+..+..++..+|..+.
T Consensus 552 ~w--~~~~~i~k~L~~~~q~-------------------~----------y~~-------R~t~l~si~~la~v~g~ei~ 593 (759)
T KOG0211|consen 552 EW--ARLEEIPKLLAMDLQD-------------------N----------YLV-------RMTTLFSIHELAEVLGQEIT 593 (759)
T ss_pred ch--hHHHhhHHHHHHhcCc-------------------c----------cch-------hhHHHHHHHHHHHHhccHHH
Confidence 43 3455666666555221 1 122 34455567788888887653
Q ss_pred ccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 002400 612 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648 (927)
Q Consensus 612 ~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~ 648 (927)
.+.++|.+..+..|. .++||-.+++.+..+.+..
T Consensus 594 --~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 594 --CEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLL 627 (759)
T ss_pred --HHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhc
Confidence 678888888887774 8899999999999998765
No 43
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=3.3e-09 Score=119.37 Aligned_cols=564 Identities=14% Similarity=0.150 Sum_probs=322.0
Q ss_pred CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 140 DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 140 ~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
.|...+..+.....+.+...|..+..-+..+.-..++... ...++|.+.+.. +...+|...+..-++.+. .....
T Consensus 79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~dev~~~~a~~~~~~~-~~v~~- 153 (759)
T KOG0211|consen 79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDEDEVLLDLAEQLGTFL-PDVGG- 153 (759)
T ss_pred cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchhHHHHHHHHHhcccc-hhccc-
Confidence 3666677777767777777777777777777666555433 567899999988 667889999888888887 54311
Q ss_pred hhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH-HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhH
Q 002400 220 GEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR-FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQK 298 (927)
Q Consensus 220 ~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~ 298 (927)
+.+... ++..+..+....+..++..+++.+...+...++ -.+.++..++..+ ...+|..
T Consensus 154 ---~~~~~~---ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l--------------~~~d~~~ 213 (759)
T KOG0211|consen 154 ---PEYAHM---LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRL--------------ATGDWFQ 213 (759)
T ss_pred ---hhHHHH---hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHc--------------cchhhhh
Confidence 222222 222333333333455677788888777654332 2233333333222 1236765
Q ss_pred HHH-HHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCC
Q 002400 299 HHA-VLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDF 377 (927)
Q Consensus 299 r~a-al~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 377 (927)
++. +.-.++...-..++ ...-.++.+.....-+|..|.||.+++.-+|.++..+.. ......++|.+.+...|
T Consensus 214 sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~D- 287 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRD- 287 (759)
T ss_pred cchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhc-
Confidence 443 44555555555442 122234555566666899999999999999999987765 34566788888888888
Q ss_pred CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Q 002400 378 QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAI 457 (927)
Q Consensus 378 ~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~ 457 (927)
....||..|..++..+.+....+. +....+.+.+++..+++++.++.........+....++. ..-....+.....
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l 363 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNL 363 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHH
Confidence 788999999999999998877542 556678888999999999999988888888887777762 1222334444444
Q ss_pred HhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHH-HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccc
Q 002400 458 LVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK-QVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPY 536 (927)
Q Consensus 458 l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (927)
++. +....|..+..-...+......+.+..... .+++.+..+... ....++.........+.-.+| ...-
T Consensus 364 ~~~----~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d---~~~~vr~a~a~~~~~~~p~~~--k~~t 434 (759)
T KOG0211|consen 364 LKD----EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD---NALHVRSALASVITGLSPILP--KERT 434 (759)
T ss_pred hcc----hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc---ccchHHHHHhccccccCccCC--cCcC
Confidence 332 445555544444444444433211111111 122222221111 111123322222211111111 1111
Q ss_pred hhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhc-ccccccHH
Q 002400 537 MSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELK-EGFFPWID 615 (927)
Q Consensus 537 l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~-~~~~~~~~ 615 (927)
++.+.|..+..++. +.. .++.. -.+.+..+-...+ .+..-+.+
T Consensus 435 i~~llp~~~~~l~d-------------------e~~----------~V~ln-------li~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 435 ISELLPLLIGNLKD-------------------EDP----------IVRLN-------LIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred ccccChhhhhhcch-------------------hhH----------HHHHh-------hHHHHHHHHhccCcccchhhhh
Confidence 12222322222211 000 01111 1111111111111 12333455
Q ss_pred HHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 002400 616 QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDA 695 (927)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~ 695 (927)
..++.+..+..+. +|.+|.+....++.++..... .+++..+..++..+..+..-+++.++...
T Consensus 479 slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~~----------------~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 479 SLLPAIVELAEDL-LWRVRLAILEYIPQLALQLGV----------------EFFDEKLAELLRTWLPDHVYSIREAAARN 541 (759)
T ss_pred hhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhhh----------------HHhhHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 6666666666654 788888888888887765421 12222222333333333233333333333
Q ss_pred HHHhhc------------------CCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHH
Q 002400 696 LNESIQ------------------GKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYG 757 (927)
Q Consensus 696 l~~~~~------------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~ 757 (927)
+...+. ..+.++-.|...+.++..+++.+|..+ +.+.++|.+.....|+.++||-++++.
T Consensus 542 l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 542 LPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKH 619 (759)
T ss_pred hHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHH
Confidence 332222 223368899999999999999999876 667899999999999999999999999
Q ss_pred HHHHHhhcCC-CcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhh
Q 002400 758 IGVCAEFGGS-VFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQF 811 (927)
Q Consensus 758 lg~l~~~~~~-~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~ 811 (927)
+..+...... ....++.+++..|. .+++ ..+|-.|..|.+-+...
T Consensus 620 L~~i~~~L~~~~~~~~v~pll~~L~---~d~~------~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 620 LPKILKLLDESVRDEEVLPLLETLS---SDQE------LDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhc---cCcc------cchhHHHHHHHHHHHHH
Confidence 9988877542 33444444444444 4553 33555566666655543
No 44
>PRK09687 putative lyase; Provisional
Probab=99.42 E-value=4.1e-11 Score=121.83 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=184.3
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTL 185 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (927)
..|+..|.++ +..||..++..+..+. -++.++.+..+++++++.+|..+..+|+.+-..-.. ....
T Consensus 26 ~~L~~~L~d~-d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDH-NSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 4466777765 8999999998887652 156888888889999999999999999998642210 2345
Q ss_pred HHHHHhh-hCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 186 HEVFSKF-LGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 186 ~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
++.+... ++|+++.||..|+.+|+.+. ..-. ...+..++.+...+.++++.++..+...+..+..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~---------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRC-KKNP---------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccc-cccc---------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 5666655 67889999999999999986 2110 1133455556566667788899888888755432
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHH
Q 002400 265 FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAI 344 (927)
Q Consensus 265 ~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 344 (927)
+..++.++ ..++|++|.+|..|..+||.+..+ -+..++.+...+.|+++.||..|.
T Consensus 158 ------~~ai~~L~----------~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~ 213 (280)
T PRK09687 158 ------EAAIPLLI----------NLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAI 213 (280)
T ss_pred ------HHHHHHHH----------HHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHH
Confidence 23444444 455678999999999999988322 235778888889999999999999
Q ss_pred HHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhc-CCChh
Q 002400 345 NAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQ-NGKQM 423 (927)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~-~~~~~ 423 (927)
++||.+.. ...+|.|++.+++ ++ ++..++.+|+.+.. +..++.|..+++ +.+..
T Consensus 214 ~aLg~~~~-----------~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 214 IGLALRKD-----------KRVLSVLIKELKK-GT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNE 268 (280)
T ss_pred HHHHccCC-----------hhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChh
Confidence 99998643 2688999999998 44 67788888887743 234566666665 67888
Q ss_pred HHHHHHHHHH
Q 002400 424 VQEGALTALA 433 (927)
Q Consensus 424 v~~~a~~al~ 433 (927)
++..+.+++.
T Consensus 269 v~~~a~~a~~ 278 (280)
T PRK09687 269 IITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.42 E-value=4.6e-11 Score=143.27 Aligned_cols=289 Identities=21% Similarity=0.218 Sum_probs=213.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccC
Q 002400 7 TQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRD 86 (927)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~ 86 (927)
...-+.+++..+...+..+++.+.++|+.+|+.|-+.|..+.. +. .+..|...+ ++.++.+|..|+-.|......
T Consensus 608 ~~~~~~~~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~-~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~- 682 (897)
T PRK13800 608 PSPRILAVLALDAPSVAELAPYLADPDPGVRRTAVAVLTETTP--PG-FGPALVAAL-GDGAAAVRRAAAEGLRELVEV- 682 (897)
T ss_pred chHHHHHHHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hh-HHHHHHHHH-cCCCHHHHHHHHHHHHHHHhc-
Confidence 3344667777788888899999999999999999999988754 44 567888777 578999999999988766432
Q ss_pred ccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHH
Q 002400 87 DSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLI 166 (927)
Q Consensus 87 ~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~ 166 (927)
+.. ...|...|.+ +++.||..++++++.+.. + -...++..+.++++.+|..++..
T Consensus 683 ------~~~---------~~~L~~~L~~-~d~~VR~~A~~aL~~~~~-----~----~~~~l~~~L~D~d~~VR~~Av~a 737 (897)
T PRK13800 683 ------LPP---------APALRDHLGS-PDPVVRAAALDVLRALRA-----G----DAALFAAALGDPDHRVRIEAVRA 737 (897)
T ss_pred ------cCc---------hHHHHHHhcC-CCHHHHHHHHHHHHhhcc-----C----CHHHHHHHhcCCCHHHHHHHHHH
Confidence 111 1345666776 489999999999987632 1 12456778899999999999999
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChh
Q 002400 167 LSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNES 246 (927)
Q Consensus 167 l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~ 246 (927)
|+.+-. .+.+...+.|+++.||..+..+|..+- ..- ..- ++.+..++.++++.
T Consensus 738 L~~~~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~-~~~---------~~~----~~~L~~ll~D~d~~ 790 (897)
T PRK13800 738 LVSVDD-------------VESVAGAATDENREVRIAVAKGLATLG-AGG---------APA----GDAVRALTGDPDPL 790 (897)
T ss_pred HhcccC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhc-ccc---------chh----HHHHHHHhcCCCHH
Confidence 997622 123456789999999999999998876 210 001 33444556678888
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 002400 247 SAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVS 326 (927)
Q Consensus 247 ~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~ 326 (927)
++..++..|..+.... .+.+.+. ..++|++|.+|.+|+.+|+.+.. ++.++
T Consensus 791 VR~aA~~aLg~~g~~~---------~~~~~l~----------~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~ 841 (897)
T PRK13800 791 VRAAALAALAELGCPP---------DDVAAAT----------AALRASAWQVRQGAARALAGAAA----------DVAVP 841 (897)
T ss_pred HHHHHHHHHHhcCCcc---------hhHHHHH----------HHhcCCChHHHHHHHHHHHhccc----------cchHH
Confidence 9999998887664321 1112222 45568899999999999987642 23557
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHH
Q 002400 327 MVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392 (927)
Q Consensus 327 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~ 392 (927)
.+...|+|+++.||.+|+++|+.+.. . +...+.|...++| .++.||..|..+|..
T Consensus 842 ~L~~~L~D~~~~VR~~A~~aL~~~~~--~--------~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 842 ALVEALTDPHLDVRKAAVLALTRWPG--D--------PAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhccCC--C--------HHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 88888999999999999999999621 1 2456777788888 899999999999863
No 46
>PRK09687 putative lyase; Provisional
Probab=99.39 E-value=9e-11 Score=119.37 Aligned_cols=253 Identities=17% Similarity=0.184 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHh
Q 002400 145 IPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKER 224 (927)
Q Consensus 145 l~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 224 (927)
++.|...+.+.+..+|..+...|..+-+ +.+++.+...+.++++.+|..|+.+|+.+- . +.. .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg-~----~~~--~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLG-M----AKR--C 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C----Ccc--c
Confidence 5667777889999999999999987753 346666777788999999999999999976 2 110 0
Q ss_pred HHhhHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHH
Q 002400 225 FLDLLPLMMRTLTEA-LNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVL 303 (927)
Q Consensus 225 ~~~~~p~ll~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal 303 (927)
.+..+..+..+ .+++++.++..++..+..+....+... +..++.+. ..+.|++|.+|.+++
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~----~~a~~~l~----------~~~~D~~~~VR~~a~ 149 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS----PKIVEQSQ----------ITAFDKSTNVRFAVA 149 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc----hHHHHHHH----------HHhhCCCHHHHHHHH
Confidence 12233333333 356788899999999888754332111 12222222 344578999999999
Q ss_pred HHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHH
Q 002400 304 IALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQ 383 (927)
Q Consensus 304 ~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~ 383 (927)
.+||.+.. +..++.++..+.|+++.||..|+.+||.+... .+.+.+.|+..+.| .++.||
T Consensus 150 ~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D-~~~~VR 209 (280)
T PRK09687 150 FALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQD-KNEEIR 209 (280)
T ss_pred HHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcC-CChHHH
Confidence 99986542 35778899999999999999999999998221 23577888999999 999999
Q ss_pred HHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccC
Q 002400 384 AHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNAND 463 (927)
Q Consensus 384 ~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 463 (927)
..|..+|+.+-. +..++.|++.++++. ++..++.++|.+.. +..+|.|.+.+...
T Consensus 210 ~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~-- 264 (280)
T PRK09687 210 IEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKF-- 264 (280)
T ss_pred HHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhC--
Confidence 999999987521 245677777777765 56677777777753 25677788777532
Q ss_pred cchhhHHHHHHHHHH
Q 002400 464 KSNRMLRAKSMECIS 478 (927)
Q Consensus 464 ~~~~~lr~~a~~~l~ 478 (927)
.+..++..+++.+.
T Consensus 265 -~d~~v~~~a~~a~~ 278 (280)
T PRK09687 265 -DDNEIITKAIDKLK 278 (280)
T ss_pred -CChhHHHHHHHHHh
Confidence 24567777777764
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=3e-10 Score=136.38 Aligned_cols=274 Identities=20% Similarity=0.214 Sum_probs=200.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASV 135 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~ 135 (927)
+..|...|. ++++.+|+.|+..|...-. ......|...|.++ +..||..++..+..+...
T Consensus 623 ~~~L~~~L~-D~d~~VR~~Av~~L~~~~~-----------------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~- 682 (897)
T PRK13800 623 VAELAPYLA-DPDPGVRRTAVAVLTETTP-----------------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEV- 682 (897)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHhhhcc-----------------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc-
Confidence 467777774 8899999999998875421 12556677777654 999999999999887532
Q ss_pred CCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh
Q 002400 136 LPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNC 215 (927)
Q Consensus 136 ~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 215 (927)
++ -.+.+...++++++.+|..++..|..+-... ...+...+.|+++.||..|+.+|..+-
T Consensus 683 -----~~-~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~--- 742 (897)
T PRK13800 683 -----LP-PAPALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVD--- 742 (897)
T ss_pred -----cC-chHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhccc---
Confidence 11 2356667788899999999999998764211 123456788999999999999988743
Q ss_pred CCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcc
Q 002400 216 LPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPE 295 (927)
Q Consensus 216 ~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~ 295 (927)
.. + .+...+.+++..++..+...|..+....+.. ++.+. .+++|++
T Consensus 743 --~~----------~----~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~--------~~~L~----------~ll~D~d 788 (897)
T PRK13800 743 --DV----------E----SVAGAATDENREVRIAVAKGLATLGAGGAPA--------GDAVR----------ALTGDPD 788 (897)
T ss_pred --Cc----------H----HHHHHhcCCCHHHHHHHHHHHHHhccccchh--------HHHHH----------HHhcCCC
Confidence 11 1 1234566788899998988888775432211 23332 4556788
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD 375 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~ 375 (927)
|.+|.+|+.+|+.+... +.+.+.+...|.|++|.||.+|+++|+.+.. +..++.|+..+.
T Consensus 789 ~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~ 848 (897)
T PRK13800 789 PLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALT 848 (897)
T ss_pred HHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhc
Confidence 99999999999987542 1233557778899999999999999997642 245688889999
Q ss_pred CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 376 DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 376 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
| +++.||..|..+|..+ . --+...+.|...+++.+..||..+..+|..
T Consensus 849 D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 849 D-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred C-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9 9999999999999885 1 013456677788899999999999888764
No 48
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.34 E-value=7.9e-08 Score=120.07 Aligned_cols=672 Identities=14% Similarity=0.164 Sum_probs=387.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhhh-HHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHH
Q 002400 148 IFQCLVTFNDKIQESALLILSRMSQFV-SEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFL 226 (927)
Q Consensus 148 l~~~l~s~~~~~r~~al~~l~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 226 (927)
++.+..+...+.+.++......+.... ..........+-..+...+...+..+...+.+.++.++ -.. +....+.+.
T Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~-~~~-~~~~~~~v~ 133 (2341)
T KOG0891|consen 56 IFELVHCLDSNERIGGILAIALLISFEGTEHDRKNISRLANYLRYLLPSNDVEVMELAAKSLGLLA-APG-KTKTAELVD 133 (2341)
T ss_pred hhhhhhhhhcccchhhHHHHHHHHHhhhcccccchhHhHHHHHHHhhccCChHHHHHHHHHHHHHh-ccc-cccchHHHH
Confidence 444434444444444444444333332 11111123344445555555557777777888888776 221 111122333
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHH
Q 002400 227 DLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIAL 306 (927)
Q Consensus 227 ~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al 306 (927)
..+..+++.+ .+..+-....+.-....++...|.++-+++..++..++ ....+++...|..+..++
T Consensus 134 ~~~k~~~ew~----~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~----------~~~~~~~~~i~~~a~~al 199 (2341)
T KOG0891|consen 134 FEVKRLIEWL----GERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIF----------AALRDPKPAIRLQACSAL 199 (2341)
T ss_pred HHHHHHHHHh----hhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHH----------HhccCCChhhhHHHHHHH
Confidence 3444444444 33334445666777777888889999999999998877 444567889999999999
Q ss_pred HHHhhhchHHH----HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHH-HhccCCCCch
Q 002400 307 AQIAEGCSKVM----IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALV-GAMDDFQNPR 381 (927)
Q Consensus 307 ~~i~~~~~~~~----~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll-~~l~~~~~~~ 381 (927)
..+....++.. .+.+...++..-..+..+... -.++...+..+.....+.+ ..+...-..... ..+.+ ..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~-~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~lk~---~~ 274 (2341)
T KOG0891|consen 200 HAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVK-IHASLLVYNELLRISDPFL-EKYDSTCVRQAKGKLLKS---IV 274 (2341)
T ss_pred HHHHhhhhhccchhhhHHHHHHHHhccccccchHHH-hhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcc---cc
Confidence 88776554422 122333444433344332211 1222223333222211111 111111111111 11111 22
Q ss_pred HHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc
Q 002400 382 VQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNA 461 (927)
Q Consensus 382 v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~ 461 (927)
++.....-+..++...+...-..|+...+..++..+.. ++..++..|+.++.+.+..+.+|...+...+.+.+...
T Consensus 275 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~ 350 (2341)
T KOG0891|consen 275 IRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRK----EKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTK 350 (2341)
T ss_pred HHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhh
Confidence 22222211122222222111125777777777776662 23778899999999999999999888666665554331
Q ss_pred cCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhH
Q 002400 462 NDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVM 541 (927)
Q Consensus 462 ~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~ 541 (927)
.- .....-...+.|++.++.+.++..|......++..+.. . ........++..+++.+++ ..+.+.
T Consensus 351 ~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~---~------~~~~~l~e~l~~l~~rl~~----l~~~i~ 416 (2341)
T KOG0891|consen 351 DL-ARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFK---C------TLSDSLLERLFILSQRIPK----LGQSIQ 416 (2341)
T ss_pred hH-HHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhc---C------CchHHHHHHHHHHHHhccc----hhhHHH
Confidence 10 00011223578899999999876555544666655432 1 2235566667777766543 334444
Q ss_pred HHHHHHcc----cC----CCc-ccc---CCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccc
Q 002400 542 PPLLQSAQ----LK----PDV-IIT---SADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG 609 (927)
Q Consensus 542 ~~ll~~l~----~~----~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~ 609 (927)
+.+++..+ .. +.. .+. ....- ...+-+ ... ++-..|.++++.+..... .
T Consensus 417 ~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~-~~~~~~-------------~~~----~~~~~a~~~l~~~~~~~~-~ 477 (2341)
T KOG0891|consen 417 DRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKA-ILQKTG-------------DST----DDIQLAFKTLGGFKFSGY-S 477 (2341)
T ss_pred HHHHHHHHHHHhCccccCccccCccchhcccch-hhhhcc-------------ccc----HHHHHHHHHHhhhhhhhh-h
Confidence 44443332 11 100 000 00000 000000 000 112446677776654322 2
Q ss_pred ccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHH
Q 002400 610 FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDIC 689 (927)
Q Consensus 610 ~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~ 689 (927)
...++.++++... ...++++|+.+...+..++.....+.++ .....+++..++..++.....++++.++
T Consensus 478 ~~~~~~~~~~~~~----~~~~~e~r~~~~l~~~~ll~~~~~~~~~-------~~~~~~~v~~vl~~ll~~aia~~~~~i~ 546 (2341)
T KOG0891|consen 478 LTLFVQQCVDSYL----EADDSEIRKNAALTCCELLKYDIICSQT-------SPHALQVVKEVLSALLTVAIADTDPDIR 546 (2341)
T ss_pred HHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHhhhhhhhcc-------cchHHHHHHHHHHHHHHHhccCCCcchh
Confidence 2233444433332 2347899999999998888765432111 1112356888888888888899999999
Q ss_pred HHHHHHHHHhhc---------------CCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHcc-CCChhHHhh
Q 002400 690 ASMLDALNESIQ---------------GKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACN-DKHPDVRQA 753 (927)
Q Consensus 690 ~~~l~~l~~~~~---------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~vr~~ 753 (927)
..++..+.+.+. ..+..-..+..+...+|.++...+..+.|++..........+. +....+...
T Consensus 547 ~~v~~~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~ 626 (2341)
T KOG0891|consen 547 IRVLSSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEE 626 (2341)
T ss_pred hhHHhhhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHH
Confidence 999998884333 5566666777788888888888887777877766666655554 444455555
Q ss_pred HhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCC
Q 002400 754 AVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSCLPL 831 (927)
Q Consensus 754 a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~Lp~ 831 (927)
++.-+..++.....-+.+|..+++..+.+.+.++.+ .+-.++..+++.++...+..+ +.+..++.+.+.++.
T Consensus 627 ~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s------~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~ 700 (2341)
T KOG0891|consen 627 SAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS------GVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQD 700 (2341)
T ss_pred HHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch------hhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHH
Confidence 666666666666667789999999999999888753 355678889999999887554 567888888888887
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHh
Q 002400 832 KGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQ 899 (927)
Q Consensus 832 ~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 899 (927)
.....++..+.+.+.++.+.. ..+..| +.+.|.++.++...+... -..-+|..+++.++....
T Consensus 701 ~s~~~rr~aslk~l~~l~s~~-~~~v~p-~~~~P~ll~~l~~~~~te---~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 701 QSSLGKRLAALKALGQLESST-GYVVDP-YLDYPELLDILINILKTE---QSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred hhhhhchhHHHHHhhhhhccc-ceEecc-cccChHHHHHHHHHHhHh---hhhHHHHHHHHHhhhhcc
Confidence 777788899999999999764 334444 678999999999988643 235577777777775443
No 49
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.8e-07 Score=105.29 Aligned_cols=472 Identities=15% Similarity=0.143 Sum_probs=278.5
Q ss_pred hHHhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHccC-cHHHHHHHH---HHHHHHHHHhhccCchhhhhCCcchh
Q 002400 224 RFLDLLPLMMRTLTEALNKG--NESSAQEALELLIELAATE-PRFLRKQLV---DVVGSMLQVAEAEAVFPGFLAAPEWQ 297 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~-~~~~~~~l~---~ll~~ll~~~~~~~~i~~~l~~~~~~ 297 (927)
...+++|.++..+...+... +......+++.+..++... -+.+...+| .-+..++..++.. .--+..+|.
T Consensus 65 LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~----npss~~~~~ 140 (1133)
T KOG1943|consen 65 LLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQ----NPSSFSDWE 140 (1133)
T ss_pred hccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhcc----CcchHHHHH
Confidence 34455555555554443322 3334567778888887654 122222221 2222223222100 000135799
Q ss_pred HHHHHHHHHHHHhhhchHH--------HHhh--HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHH
Q 002400 298 KHHAVLIALAQIAEGCSKV--------MIKN--LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLL 367 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~~~--------~~~~--l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il 367 (927)
.|+..++.|+.+.....+. ..+. +.+++.....++.. ++..|.+|+.+++++... ++. .+.+..++
T Consensus 141 ~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~-~~~~r~~aalllsk~~sR--~D~-~~~~~~Fl 216 (1133)
T KOG1943|consen 141 TRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLIS-SGILRRSAALLLSKLFSR--TDV-KDLLLSFL 216 (1133)
T ss_pred HHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHccc--ccH-HHHHHHHH
Confidence 9999999999988754331 1122 55666666666654 348899999999988753 333 34466667
Q ss_pred HHHHHhccCCCCch--HHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHH------
Q 002400 368 PALVGAMDDFQNPR--VQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVAD------ 437 (927)
Q Consensus 368 ~~ll~~l~~~~~~~--v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~--~~v~~~a~~al~~l~~------ 437 (927)
..++.+-.. ..++ +......++..+.+.++.+.+.||....+..+-.+-...+ .-+|...+..+..+.-
T Consensus 217 ~~~l~~~s~-~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~pr 295 (1133)
T KOG1943|consen 217 DWLLDCPST-ETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPR 295 (1133)
T ss_pred HHhhcccch-hhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCC
Confidence 777666665 4444 4556667788888877766677777766666654433222 2334444444442220
Q ss_pred ----------------------------------HhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400 438 ----------------------------------SSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA 483 (927)
Q Consensus 438 ----------------------------------~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 483 (927)
.-+++...+++.++..|...+.+ .+..+|-.|...++.+...
T Consensus 296 s~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d----~dt~VrWSaAKg~grvt~r 371 (1133)
T KOG1943|consen 296 SPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSD----TDTVVRWSAAKGLGRVTSR 371 (1133)
T ss_pred CcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccC----CcchhhHHHHHHHHHHHcc
Confidence 01112234556666666666544 4567888888889888877
Q ss_pred hCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCC
Q 002400 484 VGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDV 563 (927)
Q Consensus 484 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~ 563 (927)
.+.+ .+++++...+.+.+. .+++......++ +++.++.. |-.....++.++|.+++.+.++...
T Consensus 372 lp~~----Lad~vi~svid~~~p-~e~~~aWHgacL-aLAELA~r-GlLlps~l~dVvplI~kaL~Yd~~~--------- 435 (1133)
T KOG1943|consen 372 LPPE----LADQVIGSVIDLFNP-AEDDSAWHGACL-ALAELALR-GLLLPSLLEDVVPLILKALHYDVRR--------- 435 (1133)
T ss_pred CcHH----HHHHHHHHHHHhcCc-CCchhHHHHHHH-HHHHHHhc-CCcchHHHHHHHHHHHHHhhhhhhh---------
Confidence 7633 445555555543332 222333333322 44444432 2223345678888888887652100
Q ss_pred CCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHH
Q 002400 564 DIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPE 643 (927)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~ 643 (927)
| .......||.+|+-.++.
T Consensus 436 -------------------------------------------G------------------~~s~G~~VRDaAcY~~WA 454 (1133)
T KOG1943|consen 436 -------------------------------------------G------------------QHSVGQHVRDAACYVCWA 454 (1133)
T ss_pred -------------------------------------------c------------------ccccccchHHHHHHHHHH
Confidence 0 012356799999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhc--------------CCCCChhh
Q 002400 644 LLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQ--------------GKDKTAEE 709 (927)
Q Consensus 644 l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~--------------~~~~~~~~ 709 (927)
+.++. .+..++++...+.+.|+...--|++..++.+...++.+.+. .+.-+...
T Consensus 455 f~Ray------------s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 455 FARAY------------SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred HHhcC------------ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 98875 23346777888888888888888899999999999999987 22334556
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHH-ccCCChhHHhhHhHHHHHHHhhcCCCcHH-HHHHHHHHHHHhhcCC
Q 002400 710 RRIAICIFDDVMEHCREAALKYYDTYLPFLLEA-CNDKHPDVRQAAVYGIGVCAEFGGSVFKP-LVGEALSRLDFVIRHP 787 (927)
Q Consensus 710 r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~-l~d~~~~vr~~a~~~lg~l~~~~~~~~~~-~~~~il~~L~~~l~~~ 787 (927)
|+.+..-++..+...+. |...++..++.. +...|..+|+-++|+|..+....++.+.. ++++++.... .+
T Consensus 523 rsNcy~~l~~~ia~~~~----y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l----s~ 594 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSG----YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL----SK 594 (1133)
T ss_pred hhhHHHHHhHHHHhhhh----HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc----CC
Confidence 67766666666665544 555555555544 77889999999999999999887766553 3334443322 22
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhh
Q 002400 788 NALHSDNVMAYDNAVSALGKICQF 811 (927)
Q Consensus 788 ~~~~~~~~~~~~na~~al~~l~~~ 811 (927)
+...|..+.-+.|.++..
T Consensus 595 ------~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 595 ------DASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred ------ChHHhhhhHHHHHHHHHH
Confidence 233555555556655543
No 50
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.2e-08 Score=106.10 Aligned_cols=298 Identities=16% Similarity=0.184 Sum_probs=203.2
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 002400 107 VLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLH 186 (927)
Q Consensus 107 ~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~ 186 (927)
.|.+.|.+-.+...+.+.-.+|+.||+. ..-.+++|..+....+.+.++|+....-|...++.-++.- ---+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA----LLSI 110 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA----LLSI 110 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----eeeH
Confidence 3555667666777788888899999874 3467899999999999999999877776666666544321 0126
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHH
Q 002400 187 EVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFL 266 (927)
Q Consensus 187 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 266 (927)
..|.+.|.|+++.+|..|++.+..+= +..+.|.++-.+.+++.+..+-++..|...+..+-.-.+..-
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIR------------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIR------------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcc------------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 67889999999999999999988764 344778888899999888888888888888777765544432
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002400 267 RKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINA 346 (927)
Q Consensus 267 ~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~ 346 (927)
. .+..++. .++.|..+.+--+|++|+..++...-+.+.+++.. +++.|.|-+.-=+--.+..
T Consensus 179 ~-qL~e~I~-------------~LLaD~splVvgsAv~AF~evCPerldLIHknyrk----lC~ll~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 179 D-QLEEVIK-------------KLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRK----LCRLLPDVDEWGQVVLINM 240 (968)
T ss_pred H-HHHHHHH-------------HHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHH----HHhhccchhhhhHHHHHHH
Confidence 2 3333333 55577888999999999987765444444444444 4445555443334445556
Q ss_pred HHHhHhhhchhH----------------------------HHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 347 IGQLSTDLGPEL----------------------------QTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 347 l~~~~~~~~~~~----------------------------~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
|.+++...-++. ..+-+.-++...-.++.+ .++.|..+++.++..++...
T Consensus 241 L~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S-~n~sVVmA~aql~y~lAP~~- 318 (968)
T KOG1060|consen 241 LTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS-RNPSVVMAVAQLFYHLAPKN- 318 (968)
T ss_pred HHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc-CCcHHHHHHHhHHHhhCCHH-
Confidence 666654321100 011233344444455666 78888888888877665332
Q ss_pred CccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHH
Q 002400 399 PDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVM 451 (927)
Q Consensus 399 ~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~ 451 (927)
-...+...|+.+|.+ ++.+|...+..|..++..-+.-|.||+..+.
T Consensus 319 ------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf 364 (968)
T KOG1060|consen 319 ------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFF 364 (968)
T ss_pred ------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceE
Confidence 244567777776654 5678888999999999888888888877653
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.28 E-value=4.6e-08 Score=109.32 Aligned_cols=393 Identities=18% Similarity=0.272 Sum_probs=253.0
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHH
Q 002400 108 LLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA-HGDTLH 186 (927)
Q Consensus 108 Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~ 186 (927)
++..|.+. +...-..++.++..+.....+...-+.+.+.+...+.++++.+|..++..++.+.......... .-..++
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 67777765 5555577888898888876664556888889999999999999999999999988765443222 225689
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHH
Q 002400 187 EVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLL-PLMMRTLTEALNKGNESSAQEALELLIELAATEPRF 265 (927)
Q Consensus 187 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 265 (927)
+.+..++.+++..|...|++++..+. .+- ..+..++ +..+..+..++...++.++..+++++..++...+..
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~-~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLA-SHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHh-CCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999998 431 1122221 222566666666657788889999999998877665
Q ss_pred HHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH--HHH--hhHHHHHHHHHhccCCC-CHH-
Q 002400 266 LRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK--VMI--KNLDQVVSMVLNSFQDP-HPR- 338 (927)
Q Consensus 266 ~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~--~~~--~~l~~l~~~l~~~l~d~-~~~- 338 (927)
+..... .+++.++ ..+.++|.-+|..++..++.+++.... .+. ..++.+...+...-.|+ ...
T Consensus 195 ~~~~~~sgll~~ll----------~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 195 AEAVVNSGLLDLLL----------KELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred HHHHHhccHHHHHH----------HHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 544332 3666555 445567889999999999999983222 011 12333444444433444 111
Q ss_pred HHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC-ccc----cCchHHHHHHH
Q 002400 339 VRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP-DIL----TPYLDGIVSKL 413 (927)
Q Consensus 339 vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~~----~~~l~~l~~~L 413 (927)
.--......|.++..-+..+ ...++.++..+...+.+ .++..+..|..+++.++..... ..+ .+-+..++..+
T Consensus 265 ~l~g~~~f~g~la~~~~~~v-~~~~p~~~~~l~~~~~s-~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~ 342 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEV-LELYPAFLERLFSMLES-QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAI 342 (503)
T ss_pred hhhhHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHH
Confidence 22333455666666422333 45567777777777777 8899999999999999855322 112 23456777888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHhhh----hhH----HhHHHH----HH-HHHHHHhcccCcchhhHHHHHHHHHHHH
Q 002400 414 LVLLQNGKQMVQEGALTALASVADSSQG----QFQ----KYYDAV----MP-YLKAILVNANDKSNRMLRAKSMECISLV 480 (927)
Q Consensus 414 ~~~l~~~~~~v~~~a~~al~~l~~~~~~----~~~----~~~~~i----~~-~L~~~l~~~~~~~~~~lr~~a~~~l~~l 480 (927)
.....+.+..+|..++.+++.+.....+ ++. ..++.+ .. .+...++. ...++|..++..+..+
T Consensus 343 ~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q----PF~elr~a~~~~l~~l 418 (503)
T PF10508_consen 343 GDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ----PFPELRCAAYRLLQAL 418 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchHHHHHHHHHHHHH
Confidence 8888888889999999999999654443 111 122211 11 33444332 4577999999988888
Q ss_pred HHh-hCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 002400 481 GMA-VGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKC 528 (927)
Q Consensus 481 ~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (927)
+.. -|-..+ --.+.++++++.. ..+.+...++.=+.++..|++.
T Consensus 419 ~~~~Wg~~~i-~~~~gfie~lldr---~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 419 AAQPWGQREI-CSSPGFIEYLLDR---STETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hcCHHHHHHH-HhCccHHhhhcCC---CCCCCHHHHHHHHHHHHHHHhc
Confidence 743 221111 1123456665542 2222333444444455555544
No 52
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.28 E-value=7.7e-06 Score=90.66 Aligned_cols=691 Identities=14% Similarity=0.155 Sum_probs=333.6
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhccCCCC----C
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNE-TNKSIIKKICDAVSELAASVLPDG----D 140 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~-~~~~vr~~~~~~i~~ia~~~~~~~----~ 140 (927)
+.++.+|..|...||..-... . +...|.+...+. ..-..|..+.-.+-......+..+ .
T Consensus 15 s~d~~vr~~AE~~l~qle~~~------------~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr 78 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLELTE------------G----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFR 78 (1005)
T ss_pred CCChhHHHHHHHHHhccccch------------H----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhcc
Confidence 789999999999887553322 2 444455544432 344555555444444433322111 0
Q ss_pred ccc---------hHHHHHHHhcCCChHHHHHHHHHHHHhhhh-hHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 002400 141 WPE---------LIPFIFQCLVTFNDKIQESALLILSRMSQF-VSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVN 210 (927)
Q Consensus 141 w~~---------ll~~l~~~l~s~~~~~r~~al~~l~~l~~~-~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~ 210 (927)
-|. +-..+...+.+++...|.+...++..++.. +|+ ..+++++.+.+++++.+..--..|+++|..
T Consensus 79 ~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~~n~n~i~~am~vL~e 154 (1005)
T KOG2274|consen 79 YPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSSGNENSIHGAMRVLAE 154 (1005)
T ss_pred CCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 111 222333444445555666666676666543 333 578999999999999888888899999999
Q ss_pred HHHhhCCCchhHHhHHhhHHHHHHHHHHH---HhcCChhHHHHH--HHHHHHH---Hcc----CcHHHHHHHHHHHHHHH
Q 002400 211 FIMNCLPSLGEKERFLDLLPLMMRTLTEA---LNKGNESSAQEA--LELLIEL---AAT----EPRFLRKQLVDVVGSML 278 (927)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~p~ll~~l~~~---l~~~~~~~~~~a--~~~l~~l---~~~----~~~~~~~~l~~ll~~ll 278 (927)
+. ..... .......|..+..+... ........+..+ ...+.++ .+. .....+..+..+++..+
T Consensus 155 l~-~ev~~----ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~ 229 (1005)
T KOG2274|consen 155 LS-DEVDV----EEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFM 229 (1005)
T ss_pred HH-HHHHH----HHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 32210 11111111112221111 111111111111 1222211 111 11222333344444444
Q ss_pred HHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc----------------------CCCC
Q 002400 279 QVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF----------------------QDPH 336 (927)
Q Consensus 279 ~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l----------------------~d~~ 336 (927)
.+++.. + +.-...+|..|..-+.++..+.+..+..+.++...+++.+...+ .|..
T Consensus 230 ~~l~h~--l-~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd 306 (1005)
T KOG2274|consen 230 DILEHP--L-QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSD 306 (1005)
T ss_pred HHHhhh--h-cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCc
Confidence 333211 0 00012569999999999999999888866666555544333211 1111
Q ss_pred HHH---HHHHHH---HHHHhHhhh--chhHHHHhHhhHHHHHHHhcc------------------CC-CCchHHHHHHHH
Q 002400 337 PRV---RWAAIN---AIGQLSTDL--GPELQTQFHHRLLPALVGAMD------------------DF-QNPRVQAHAASA 389 (927)
Q Consensus 337 ~~v---r~~a~~---~l~~~~~~~--~~~~~~~~~~~il~~ll~~l~------------------~~-~~~~v~~~a~~a 389 (927)
|.+ ...... .+..+.+.. ...+ ...+..+++.++..++ +. +...+|..+...
T Consensus 307 ~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti-~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~ 385 (1005)
T KOG2274|consen 307 PEEKSVETLVIQIVEFLSTIVTNRFLSKTI-KKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDL 385 (1005)
T ss_pred hhhhChHHhhhhHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHH
Confidence 211 111111 111111110 0111 0111122222221111 10 112455555566
Q ss_pred HHHhHhcCCCccccCchHHHHHHHHHH-----hcCC-ChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccC
Q 002400 390 VLNFSENCTPDILTPYLDGIVSKLLVL-----LQNG-KQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNAND 463 (927)
Q Consensus 390 l~~l~~~~~~~~~~~~l~~l~~~L~~~-----l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 463 (927)
+..+....+...+.|..+..=..+... ++.. .++.++..+.+...+. .++....++..+...+...+...
T Consensus 386 ~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~~-- 461 (1005)
T KOG2274|consen 386 LLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVYQ-- 461 (1005)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhcccc--
Confidence 666666555444433332221222211 1111 2456666666655554 22223344555555555554332
Q ss_pred cchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHH
Q 002400 464 KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPP 543 (927)
Q Consensus 464 ~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ 543 (927)
+.+.+-.+++-+++.++.+.. .-.+....+++..++.. ..+...+++..+.++|...|+ ..-+.+++|.++..
T Consensus 462 -e~P~Ll~Ra~~~i~~fs~~~~--~~~~~~~~fl~~~v~~l--~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 462 -ESPFLLLRAFLTISKFSSSTV--INPQLLQHFLNATVNAL--TMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDG 534 (1005)
T ss_pred -cCHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhh--ccCCCCchhHHHHHHHHhccC--ceeccccchHHHHH
Confidence 334455567777776665521 11222233333333321 122334466666665555541 12344555555555
Q ss_pred HHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhh
Q 002400 544 LLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 623 (927)
Q Consensus 544 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 623 (927)
+++....
T Consensus 535 L~qlas~------------------------------------------------------------------------- 541 (1005)
T KOG2274|consen 535 LLQLASK------------------------------------------------------------------------- 541 (1005)
T ss_pred HHHHccc-------------------------------------------------------------------------
Confidence 5544422
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHhhcC
Q 002400 624 LLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALH-KEPEIDICASMLDALNESIQG 702 (927)
Q Consensus 624 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~-~e~d~~v~~~~l~~l~~~~~~ 702 (927)
+++++-..-+++|+.+++. ++++....-+.+.|.++..+. ..+|+.+.
T Consensus 542 -----~s~evl~llmE~Ls~vv~~-------------dpef~as~~skI~P~~i~lF~k~s~DP~V~------------- 590 (1005)
T KOG2274|consen 542 -----SSDEVLVLLMEALSSVVKL-------------DPEFAASMESKICPLTINLFLKYSEDPQVA------------- 590 (1005)
T ss_pred -----ccHHHHHHHHHHHHHHhcc-------------ChhhhhhhhcchhHHHHHHHHHhcCCchHH-------------
Confidence 1233333333333333322 233334444455555444432 22232222
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCC----hhHHhhHhHHHHHHHhhcCCCc-HHHHHHHH
Q 002400 703 KDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKH----PDVRQAAVYGIGVCAEFGGSVF-KPLVGEAL 777 (927)
Q Consensus 703 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~----~~vr~~a~~~lg~l~~~~~~~~-~~~~~~il 777 (927)
..+--++-+++. ......|+...++|.+++-+..++ +.....++..|..+.++++.++ ...+..++
T Consensus 591 --------~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~F 661 (1005)
T KOG2274|consen 591 --------SLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAF 661 (1005)
T ss_pred --------HHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHh
Confidence 223333333333 122334566778888888776544 5677778888888888887654 34556677
Q ss_pred HHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC---------CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 002400 778 SRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI---------DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSM 848 (927)
Q Consensus 778 ~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~---------~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l 848 (927)
+.+.++.-..+ +.+...|+-.|+.-++...++++ ++--++...=.-|....++..+..+-+.+..|
T Consensus 662 paVak~tlHsd-----D~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tL 736 (1005)
T KOG2274|consen 662 PAVAKITLHSD-----DHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTL 736 (1005)
T ss_pred HHhHhheeecC-----ChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHH
Confidence 77777664332 34567788889888887633322 23334443333343334444555777888889
Q ss_pred HhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCC-HHHHHHHH
Q 002400 849 VERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQ-PQQQLALQ 922 (927)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~l~ 922 (927)
+.+.+..+ ++ ++++|+..+.+-|... .+..+-+.++-++.++.-..++ .+..++.++| +....++.
T Consensus 737 it~a~~el-~~---n~d~IL~Avisrmq~a---e~lsviQsLi~VfahL~~t~~~-~~l~FL~Slp~~~g~~Ale 803 (1005)
T KOG2274|consen 737 ITHASSEL-GP---NLDQILRAVISRLQQA---ETLSVIQSLIMVFAHLVHTDLD-QLLNFLSSLPGPTGEPALE 803 (1005)
T ss_pred HHHHHHHh-ch---hHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhhCCHH-HHHHHHHhCCCCCCCcHHH
Confidence 98775554 43 6889988777766431 1223344444455555433344 3778888864 34444443
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.26 E-value=3.8e-08 Score=109.93 Aligned_cols=396 Identities=16% Similarity=0.198 Sum_probs=250.7
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVG 372 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~ 372 (927)
+.+...-..++..|..+.....- ....+.+.+.+..+|.++++.||.-+++.++++...-......-.-..+++.++.
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~ 126 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQ 126 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHH
Confidence 33444445556666666554321 2337788899999999999999999999999988754322211233679999999
Q ss_pred hccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHH-----HHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 373 AMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGI-----VSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 373 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l-----~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
++.+ ++..|...|..+|..++..- +.+..+ +..|..++...+..+|-.+++++..++....+.+....
T Consensus 127 ~L~~-~d~~Va~~A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 127 CLRD-PDLSVAKAAIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHcC-CcHHHHHHHHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999 99999999999999998643 223333 77788888887888999999999999887776553322
Q ss_pred -HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHH--HHHHHHHHHhccCCCC---CCcchHHHHHH
Q 002400 448 -DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK--QVMEVLMSLQGSQMEA---DDPTTSYMLQA 521 (927)
Q Consensus 448 -~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~---~~~~~~~~~~~ 521 (927)
..+++.+...+.+ ++..++..++++++.++.. ..-..|+. .+++.+.++.....++ ..-.....+.+
T Consensus 200 ~sgll~~ll~eL~~----dDiLvqlnalell~~La~~---~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 200 NSGLLDLLLKELDS----DDILVQLNALELLSELAET---PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred hccHHHHHHHHhcC----ccHHHHHHHHHHHHHHHcC---hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 2377777776654 5677899999999999972 22233332 3555555543332111 11144556678
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHH
Q 002400 522 WARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCC 601 (927)
Q Consensus 522 ~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~ 601 (927)
++.++..-+..+..-.|.++..+++.+... | ...+..|+++++.
T Consensus 273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~-------------------d-----------------~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFLERLFSMLESQ-------------------D-----------------PTIREVAFDTLGQ 316 (503)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhCCC-------------------C-----------------hhHHHHHHHHHHH
Confidence 888887655555555677777777555321 0 1235678889998
Q ss_pred HHHHhcc------cccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 002400 602 YADELKE------GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPA 675 (927)
Q Consensus 602 l~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 675 (927)
++....+ ...+-++.++..+...... ...++|..+..+++.++.... ....+.+. .+...
T Consensus 317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~---------~~~~~~i~----~~~~~ 382 (503)
T PF10508_consen 317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGT---------DRQDNDIL----SITES 382 (503)
T ss_pred HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCC---------CCchHHHH----HHHHH
Confidence 8765433 2234455666666665554 356899999999999975420 11111111 23333
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHHHHHHh-hhhhhhhHHhHHHHHHHHccCCChhHHhh
Q 002400 676 LVEALHKEPEIDICASMLDALNESIQGKDKT-AEERRIAICIFDDVMEHC-REAALKYYDTYLPFLLEACNDKHPDVRQA 753 (927)
Q Consensus 676 ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~-~~~r~~a~~~l~~l~~~~-~~~~~~~~~~ll~~l~~~l~d~~~~vr~~ 753 (927)
..+.+..++...+. +..+ ..+ ++.|..++..+..++.+- |.....-.+.++..++.+-.+.+...++.
T Consensus 383 w~~~~~~~~~~~~l---~~~~-------~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~ 452 (503)
T PF10508_consen 383 WYESLSGSPLSNLL---MSLL-------KQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEA 452 (503)
T ss_pred HHHHhcCCchHHHH---HHHh-------cCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence 34444444322211 1111 123 788888888888888764 33333345567777777766677666665
Q ss_pred HhHHHHHHHhh
Q 002400 754 AVYGIGVCAEF 764 (927)
Q Consensus 754 a~~~lg~l~~~ 764 (927)
=...+..++..
T Consensus 453 K~~ii~~l~~~ 463 (503)
T PF10508_consen 453 KYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 54
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-08 Score=105.34 Aligned_cols=379 Identities=17% Similarity=0.242 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhc--
Q 002400 38 SHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNE-- 115 (927)
Q Consensus 38 ~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~-- 115 (927)
.+|-.+|+++++. ++.| ..+.+++....+.....+|+..+|+.+... +..+++......|+.++..+..-
T Consensus 2 ~~A~~~L~~FQ~S-~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~------F~~Lp~~~~~slrdsl~thl~~l~~ 73 (559)
T KOG2081|consen 2 EKANNWLGNFQKS-NDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD------FSELPPLTHASLRDSLITHLKELHD 73 (559)
T ss_pred chHhHHHHHhCCC-hHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh------HHhcCcchhHHHHHHHHHHHHHHHh
Confidence 4688999999996 4445 567777766778899999999999999998 99999988888999877776542
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH---------------HHHH
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE---------------VLIA 180 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~---------------~l~~ 180 (927)
..+.+|.+++-+++.++-+.. .|.+-++.+++.+.+..+. ...-+.+|..+.+...+ .+..
T Consensus 74 ~~~~i~tQL~vavA~Lal~~~---~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~ 149 (559)
T KOG2081|consen 74 HPDVIRTQLAVAVAALALHMP---EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAA 149 (559)
T ss_pred CCchHHHHHHHHHHHHHHHhH---hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHH
Confidence 244899999999999998753 6998888888877766554 23344455555443221 2223
Q ss_pred hHHHHHHHHHhhhCCC---CHHHHHHHHHHHHHHHHh--hCCCc------------------h-----------------
Q 002400 181 HGDTLHEVFSKFLGSN---NFDLRIAALEATVNFIMN--CLPSL------------------G----------------- 220 (927)
Q Consensus 181 ~~~~l~~~l~~~l~~~---~~~vr~~a~~~l~~l~~~--~~~~~------------------~----------------- 220 (927)
....++..+..+++.+ +..+-..++++++++. . .++.+ +
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl-~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~ 228 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWL-RLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCS 228 (559)
T ss_pred hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhh-hhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHh
Confidence 4455666666666654 2455566666666654 2 11100 0
Q ss_pred -hHH---hHH------------------------------hhHHHHHHHHH------------------HHHhcCChhHH
Q 002400 221 -EKE---RFL------------------------------DLLPLMMRTLT------------------EALNKGNESSA 248 (927)
Q Consensus 221 -~~~---~~~------------------------------~~~p~ll~~l~------------------~~l~~~~~~~~ 248 (927)
.++ .+. .++-.+-+... -.....+.++.
T Consensus 229 ~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 229 LDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhh
Confidence 000 000 00000000000 00112344566
Q ss_pred HHHHHHHHHHHccC--------cHHHHHHHHHHHHHHHHHhhcc----------------------------------Cc
Q 002400 249 QEALELLIELAATE--------PRFLRKQLVDVVGSMLQVAEAE----------------------------------AV 286 (927)
Q Consensus 249 ~~a~~~l~~l~~~~--------~~~~~~~l~~ll~~ll~~~~~~----------------------------------~~ 286 (927)
...+.+|..+.+.. -..++++...++..+.+-..-+ ..
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 66777787776431 2457788888887776543100 11
Q ss_pred hh----hhh-CCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH
Q 002400 287 FP----GFL-AAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ 361 (927)
Q Consensus 287 i~----~~l-~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 361 (927)
+. ... ..+.|+.-+|++..+..++...+..-.+.+++++..+.+ +....+ +|++++..+|.+++|+.... .
T Consensus 389 lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~n-lp~Q~~-~~~ts~ll~g~~~ew~~~~p--~ 464 (559)
T KOG2081|consen 389 LKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICN-LPEQAP-LRYTSILLLGEYSEWVEQHP--E 464 (559)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhC-Cccchh-HHHHHHHHHHHHHHHHHhCc--H
Confidence 11 111 246799999999999999998775555666666666654 333333 99999999999999986443 5
Q ss_pred hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHH---HHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 002400 362 FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGI---VSKLLVLLQNGKQMVQEGALTALASVADS 438 (927)
Q Consensus 362 ~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l---~~~L~~~l~~~~~~v~~~a~~al~~l~~~ 438 (927)
.+..++..+...+.. . +....+..++..++..|... +.++++.+ +..+.....+ ....- .+..++.++..
T Consensus 465 ~le~v~~~~~~~~~~-~--~~as~~a~~~~~i~~~c~~~-~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~~~s~i~~~ 537 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQL-K--RLASAAALAFHRICSACRVQ-MTCLIPSLLELIRSLDSTQIN--EEAAC-LLQGISLIISN 537 (559)
T ss_pred HHHHHHHHHHHHhhh-c--chhHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhc
Confidence 666677777777776 2 27777888888888777532 33444443 3333333322 22222 45555555544
Q ss_pred hh
Q 002400 439 SQ 440 (927)
Q Consensus 439 ~~ 440 (927)
.+
T Consensus 538 lp 539 (559)
T KOG2081|consen 538 LP 539 (559)
T ss_pred CC
Confidence 44
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.25 E-value=2.5e-10 Score=110.72 Aligned_cols=314 Identities=15% Similarity=0.183 Sum_probs=204.4
Q ss_pred chHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch
Q 002400 143 ELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG 220 (927)
Q Consensus 143 ~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~ 220 (927)
..+|.+++.+. +........|.++|..++.--..+-.-.+ ..-+|+|.+.|.+++.+||..++.+|++++ -. ++.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA-GD--S~~ 190 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA-GD--SEG 190 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc-CC--chh
Confidence 45666777663 44445566788888888765443211111 246889999999999999999999999988 21 111
Q ss_pred hHHhH--HhhHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHccC-cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcc
Q 002400 221 EKERF--LDLLPLMMRTLTEALNKGN--ESSAQEALELLIELAATE-PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPE 295 (927)
Q Consensus 221 ~~~~~--~~~~p~ll~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~-~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~ 295 (927)
-+..+ ...+.+++..+. +.. -.....+-..+..++... |.--...+...+|.+. +++.+.+
T Consensus 191 ~RD~vL~~galeplL~ll~----ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~----------KLiys~D 256 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLL----SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILA----------KLIYSRD 256 (526)
T ss_pred HHHHHHhcCchHHHHHHHH----hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHH----------HHHhhcC
Confidence 11111 112333444333 332 345566777788888542 2211223344444444 4455677
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH--hHhhHHHHHHH
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ--FHHRLLPALVG 372 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~il~~ll~ 372 (927)
..+-.-|+++++.++++..+.+...++ .+.+.++..|.+++..|+.-|+..+|.+.+. .+.+.+ .-..+++.+..
T Consensus 257 ~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG--~D~QTqviI~~G~L~a~~~ 334 (526)
T COG5064 257 PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG--SDDQTQVIINCGALKAFRS 334 (526)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec--CccceehheecccHHHHHH
Confidence 888889999999999998876665555 3456788889999999999999999998763 332222 23356777777
Q ss_pred hccCCCCchHHHHHHHHHHHhHhcCCCccccCchH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh--hhhHHhH--
Q 002400 373 AMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD-GIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--GQFQKYY-- 447 (927)
Q Consensus 373 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~-- 447 (927)
.|.+ +...+|..|||.+.++..... +.++..++ .+++.|+++++....++|..|+++|+......- ++...|+
T Consensus 335 lLs~-~ke~irKEaCWTiSNITAGnt-eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~ 412 (526)
T COG5064 335 LLSS-PKENIRKEACWTISNITAGNT-EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS 412 (526)
T ss_pred HhcC-hhhhhhhhhheeecccccCCH-HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH
Confidence 7888 778999999999999876543 22333232 567788888899999999999999999865442 2444554
Q ss_pred HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHH
Q 002400 448 DAVMPYLKAILVNANDKSNRMLRAKSMECISLVG 481 (927)
Q Consensus 448 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~ 481 (927)
+.++..|...+.-..+ .+-..+++|+..+.
T Consensus 413 qG~IkpLc~~L~~~dN----kiiev~LD~~eniL 442 (526)
T COG5064 413 QGFIKPLCDLLDVVDN----KIIEVALDAIENIL 442 (526)
T ss_pred ccchhHHHHHHhccCc----cchhhhHHHHHHHH
Confidence 3466777777654221 23334566665554
No 56
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-06 Score=99.34 Aligned_cols=578 Identities=18% Similarity=0.152 Sum_probs=309.4
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHh---cCCChH--HHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHHH
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCL---VTFNDK--IQESALLILSRMSQFVSE-VLIAHGDTLHEVFS 190 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l---~s~~~~--~r~~al~~l~~l~~~~~~-~l~~~~~~l~~~l~ 190 (927)
+...|+.++-+++..... + +..+-++.++--.+ +...++ .+.+.+..+..+...... ...++....+..+.
T Consensus 188 ~~~~r~~aalllsk~~sR--~-D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~ 264 (1133)
T KOG1943|consen 188 SGILRRSAALLLSKLFSR--T-DVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLS 264 (1133)
T ss_pred cchhHHHHHHHHHHHccc--c-cHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhc
Confidence 447788888888766532 1 11122333332222 222233 345566777777766554 34456666666665
Q ss_pred hhhCCCCH--HHHHHHHHHHHHHHHhhCC-Cc---------------------------------hhHHhHHhhHHHHHH
Q 002400 191 KFLGSNNF--DLRIAALEATVNFIMNCLP-SL---------------------------------GEKERFLDLLPLMMR 234 (927)
Q Consensus 191 ~~l~~~~~--~vr~~a~~~l~~l~~~~~~-~~---------------------------------~~~~~~~~~~p~ll~ 234 (927)
.+-.+.+. -+|+.-+++...+-.-.++ +. ++.+....++..+++
T Consensus 265 ~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie 344 (1133)
T KOG1943|consen 265 VCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIE 344 (1133)
T ss_pred ccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHH
Confidence 55444332 3444545554432100111 00 111223455666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHccCcH-HHHHHHHHHHHHHHHHhhccCchhhhh-CCcchhHHHHHHHHHHHHhhh
Q 002400 235 TLTEALNKGNESSAQEALELLIELAATEPR-FLRKQLVDVVGSMLQVAEAEAVFPGFL-AAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 235 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~l~~ll~~ll~~~~~~~~i~~~l-~~~~~~~r~aal~al~~i~~~ 312 (927)
.+.+.+.+.|..++-.+...+..+....|. .....++.++..+ ... .+..|. .|+.+|+.++..
T Consensus 345 ~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~-----------~p~e~~~aWH---gacLaLAELA~r 410 (1133)
T KOG1943|consen 345 HLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLF-----------NPAEDDSAWH---GACLALAELALR 410 (1133)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhc-----------CcCCchhHHH---HHHHHHHHHHhc
Confidence 666677777888888888888888876653 3344455555511 111 245686 889999888863
Q ss_pred chHHHHhhHHHHHHHHHhccCCC--------CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHH-HhccCCCCchHH
Q 002400 313 CSKVMIKNLDQVVSMVLNSFQDP--------HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALV-GAMDDFQNPRVQ 383 (927)
Q Consensus 313 ~~~~~~~~l~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll-~~l~~~~~~~v~ 383 (927)
-- .....++.++|.+.+++.-. ...||.+||..+=.++....+...++++..+.+.|+ ..+-| ++-.+|
T Consensus 411 Gl-Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD-revncR 488 (1133)
T KOG1943|consen 411 GL-LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD-REVNCR 488 (1133)
T ss_pred CC-cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC-chhhHh
Confidence 21 11234667888888877543 346999999988888887777665778887877766 45667 888999
Q ss_pred HHHHHHHHHhHhcCCC------------------------------ccccCchHHHHHHHHHH-hcCCChhHHHHHHHHH
Q 002400 384 AHAASAVLNFSENCTP------------------------------DILTPYLDGIVSKLLVL-LQNGKQMVQEGALTAL 432 (927)
Q Consensus 384 ~~a~~al~~l~~~~~~------------------------------~~~~~~l~~l~~~L~~~-l~~~~~~v~~~a~~al 432 (927)
.+|..||...+-..+. ..+..|...+++.++.. +.+.+..+|+.+..++
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 9998887766533210 12334566777777665 6777889999999999
Q ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcch--hhhhHHHHHHHHHHHhccCCCC
Q 002400 433 ASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDK--FRDDAKQVMEVLMSLQGSQMEA 510 (927)
Q Consensus 433 ~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~ 510 (927)
..+...-++.+.. ..+|.+..... ..+...|..++-+.+.+..+...-. +....+.-+.-+.++... +
T Consensus 569 ~~Ls~~~pk~~a~---~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~-~-- 638 (1133)
T KOG1943|consen 569 HKLSLTEPKYLAD---YVLPPLLDSTL----SKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP-I-- 638 (1133)
T ss_pred HHHHHhhHHhhcc---cchhhhhhhhc----CCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH-H--
Confidence 9988766654332 23333333321 1344566666666666665443111 111111111111100000 0
Q ss_pred CCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHH
Q 002400 511 DDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLE 590 (927)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (927)
+...+-+..| ..+...+-..++.++..
T Consensus 639 ----------~~~~~~rg~~----~lmr~~~~~~Ie~~s~s--------------------------------------- 665 (1133)
T KOG1943|consen 639 ----------CDRYFYRGQG----TLMRQATLKFIEQLSLS--------------------------------------- 665 (1133)
T ss_pred ----------HHHHhccchH----HHHHHHHHHHHHHhhhc---------------------------------------
Confidence 0000000000 00000011111111110
Q ss_pred hHHHHHHHHHHHHHHhcccccccH-HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002400 591 EKATACNMLCCYADELKEGFFPWI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLT 669 (927)
Q Consensus 591 ~k~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (927)
-..-+..++ +.....+.+.+++ ...+|..|..++++++....+..+ + ...
T Consensus 666 ---------------~~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~-----~----~~~--- 716 (1133)
T KOG1943|consen 666 ---------------KDRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADE-----G----EEA--- 716 (1133)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCc-----h----hhh---
Confidence 000000111 1122222333333 238999999999999887654211 0 011
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHhh-----------------c--CCCCChhhHHHHHHHHHHHHHHhhhhhh-
Q 002400 670 DYIIPALVEALHKEPEIDICASMLDALNESI-----------------Q--GKDKTAEERRIAICIFDDVMEHCREAAL- 729 (927)
Q Consensus 670 ~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~-----------------~--~~~~~~~~r~~a~~~l~~l~~~~~~~~~- 729 (927)
.++...+..+.+..+..++..+.-++...- . ..+..++.|+..+..+..+++..+....
T Consensus 717 -~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~ 795 (1133)
T KOG1943|consen 717 -PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFS 795 (1133)
T ss_pred -HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355555666666655444444433321111 1 2334778899999999999998874332
Q ss_pred hhHHhHHHHHHHHccC----C--C--hhHHhhHhHHHHHHHhhc--CCCcHHHH-HHHHHHHHHhhcCCCCCCchhhhHH
Q 002400 730 KYYDTYLPFLLEACND----K--H--PDVRQAAVYGIGVCAEFG--GSVFKPLV-GEALSRLDFVIRHPNALHSDNVMAY 798 (927)
Q Consensus 730 ~~~~~ll~~l~~~l~d----~--~--~~vr~~a~~~lg~l~~~~--~~~~~~~~-~~il~~L~~~l~~~~~~~~~~~~~~ 798 (927)
...+++...+++++.| . | .-||.+|..++-.+.... |+.+.+.. ..++.. +++.+- +.....|
T Consensus 796 ~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~---~vqQ~v---eKIdrlr 869 (1133)
T KOG1943|consen 796 ESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRY---FVQQAV---EKIDRLR 869 (1133)
T ss_pred ccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHH---HHHHhH---HHHHHHH
Confidence 3566777777777764 1 1 349999988887776543 33333322 222222 222221 1234468
Q ss_pred HHHHHHHHHHHhhc
Q 002400 799 DNAVSALGKICQFH 812 (927)
Q Consensus 799 ~na~~al~~l~~~~ 812 (927)
+-|++|+.+++.+.
T Consensus 870 e~a~~~~~qi~~~~ 883 (1133)
T KOG1943|consen 870 ELAASALNQIVVHS 883 (1133)
T ss_pred HHHHHHHhceeecC
Confidence 88999999888763
No 57
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-05 Score=87.75 Aligned_cols=558 Identities=13% Similarity=0.127 Sum_probs=298.4
Q ss_pred hcCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhh-ChhHH---HHHHHHHHhc---CCChhHHHHHHHHHHhhccc
Q 002400 14 LLGPNPAHFETLISNL-MSSSNEHRSHAEVLLSHLRQS-HPDAF---ALNLSRMLSS---SSLPECRAMSAILLRKHLTR 85 (927)
Q Consensus 14 ~~~~~~~~l~~~L~~~-~s~d~~~r~~Ae~~l~~~~~~-~p~~~---~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~ 85 (927)
|-+.|.+++..++-.+ .+.-+..++|=.+.+--+.+. -|+.| ++.|+.-+.+ +....++..|-.++|+.---
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e 160 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE 160 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc
Confidence 3344566776665554 555566777776666655432 34445 3333333332 12456666666666654311
Q ss_pred CccccccccccCHhHHHHHHHHHH-------HHHh--------hcchhhHHHHH-------HHHHHHHHhccCCC---CC
Q 002400 86 DDSTSFIFTRLAPSTQANLKSVLL-------VQLQ--------NETNKSIIKKI-------CDAVSELAASVLPD---GD 140 (927)
Q Consensus 86 ~~~~~~~w~~l~~~~~~~ik~~Ll-------~~l~--------~~~~~~vr~~~-------~~~i~~ia~~~~~~---~~ 140 (927)
. -+.+...+||-.|- ..+. .+.+...-+.+ |.+.-.+...+.|+ +.
T Consensus 161 f---------rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdn 231 (960)
T KOG1992|consen 161 F---------RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDN 231 (960)
T ss_pred c---------ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhh
Confidence 1 12222333332221 1111 11222222222 22333333345551 22
Q ss_pred ccchHHHHHHHhcCCCh-------------HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCH-----HHHH
Q 002400 141 WPELIPFIFQCLVTFND-------------KIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNF-----DLRI 202 (927)
Q Consensus 141 w~~ll~~l~~~l~s~~~-------------~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~-----~vr~ 202 (927)
..+.++....+++.++| .+|...|..+..-...+++.+.+++++++......+.+.++ ....
T Consensus 232 m~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs 311 (960)
T KOG1992|consen 232 MKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVS 311 (960)
T ss_pred HHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 23345555555542211 35667777787778888899999999998888877765433 2455
Q ss_pred HHHHHHHHHHH-hh----CCCchhHHhHHh--hHHH--------------HHHHHHHHHhcCChh-HHHHHHHHHHHHHc
Q 002400 203 AALEATVNFIM-NC----LPSLGEKERFLD--LLPL--------------MMRTLTEALNKGNES-SAQEALELLIELAA 260 (927)
Q Consensus 203 ~a~~~l~~l~~-~~----~~~~~~~~~~~~--~~p~--------------ll~~l~~~l~~~~~~-~~~~a~~~l~~l~~ 260 (927)
.|+..|..++. .+ +.+++-...+.+ .+|. -++-+..-++..|-+ .+..|++.+..+++
T Consensus 312 ~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~ 391 (960)
T KOG1992|consen 312 KALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCK 391 (960)
T ss_pred HHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHH
Confidence 67777777661 11 111110000000 0111 111222222222322 35678888888887
Q ss_pred cCcHHHHHHHHHHHHHHHH-Hhhcc--------------------------------------Cc-----hhhhhC---C
Q 002400 261 TEPRFLRKQLVDVVGSMLQ-VAEAE--------------------------------------AV-----FPGFLA---A 293 (927)
Q Consensus 261 ~~~~~~~~~l~~ll~~ll~-~~~~~--------------------------------------~~-----i~~~l~---~ 293 (927)
.-...+...+...+..+++ ...|+ .| +..+.+ .
T Consensus 392 ~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn 471 (960)
T KOG1992|consen 392 NFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVN 471 (960)
T ss_pred HhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccc
Confidence 6432223333333333332 22221 11 111122 1
Q ss_pred cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc--------hhHHHHhHhh
Q 002400 294 PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG--------PELQTQFHHR 365 (927)
Q Consensus 294 ~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--------~~~~~~~~~~ 365 (927)
+.+-.|.+++.-+-..-...+ ++++-.++|.+...|..++..|..-|+.++.++..... +....++...
T Consensus 472 ~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ 548 (960)
T KOG1992|consen 472 EFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEI 548 (960)
T ss_pred cccchhhcccceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHH
Confidence 223344444333322222222 26777889999999999999998888888887764332 2222455666
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhc----CC-ChhHHHHHHHHHHHHHHHhh
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQ----NG-KQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~----~~-~~~v~~~a~~al~~l~~~~~ 440 (927)
++..+.+.++- +...=-+...+++-+++.... +.+.|+.+.++..|.+.+. ++ ++.--...++++|.+.....
T Consensus 549 ll~nLf~a~s~-p~~~EneylmKaImRii~i~~-~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 549 LLTNLFKALSL-PGKAENEYLMKAIMRIISILQ-SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC 626 (960)
T ss_pred HHHHHHHhccC-CcccccHHHHHHHHHHHHhCH-HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 77777777665 433333556677777776655 3355888888877776653 33 35556677788888776555
Q ss_pred h----hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH--HhccCCCCCCcc
Q 002400 441 G----QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQMEADDPT 514 (927)
Q Consensus 441 ~----~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~ 514 (927)
. ....+...++|.+...+.+ +-..+-..++..++.+....+. ...+....+++.+++ +|... .-
T Consensus 627 ~~~~~~vs~~e~aL~p~fq~Il~e----DI~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r~-----gN 696 (960)
T KOG1992|consen 627 KANPSAVSSLEEALFPVFQTILSE----DIQEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKRS-----GN 696 (960)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhhc-----CC
Confidence 4 2456777888888888765 4555667778888888876653 233333334444442 33321 11
Q ss_pred hHHHHHHHHHHHHHhccccc--cchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhH
Q 002400 515 TSYMLQAWARLCKCLGQEFI--PYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEK 592 (927)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~~~--~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 592 (927)
...+.+.+..+.+.-...+. ..++.|+..+-+.+..+.. |
T Consensus 697 ipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~--------------D------------------------ 738 (960)
T KOG1992|consen 697 IPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAN--------------D------------------------ 738 (960)
T ss_pred cHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCccc--------------c------------------------
Confidence 23444555555554444444 4556666665555543321 0
Q ss_pred HHHHHHHHHHHHHhcc-cccccHHHHHHHHhhhhcccCcHHH
Q 002400 593 ATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEV 633 (927)
Q Consensus 593 ~~a~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~v 633 (927)
..+..+|..+....+. ...||+.+++..++..+..+..+.-
T Consensus 739 h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf 780 (960)
T KOG1992|consen 739 HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKF 780 (960)
T ss_pred hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHH
Confidence 2355567777777664 4789999999999999987544443
No 58
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.19 E-value=2.8e-09 Score=120.09 Aligned_cols=278 Identities=19% Similarity=0.233 Sum_probs=192.3
Q ss_pred hHHHHHHHhcC-CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCC--ch
Q 002400 144 LIPFIFQCLVT-FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPS--LG 220 (927)
Q Consensus 144 ll~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--~~ 220 (927)
+++.+..++++ ...+.|..|+.+|..+.....+. ..++.++|+++.++.|+..+||..|+.++..++ ....+ ..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L-~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELL-ALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHH-hhccCCCcc
Confidence 56677777765 34566788999998888877654 257899999999999999999999999999988 54421 22
Q ss_pred hHHhHHhhHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHccCcH-------------------------HHHHHHHHHH
Q 002400 221 EKERFLDLLPLMMRTLTEALNKGN-ESSAQEALELLIELAATEPR-------------------------FLRKQLVDVV 274 (927)
Q Consensus 221 ~~~~~~~~~p~ll~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~-------------------------~~~~~l~~ll 274 (927)
+...|.+++ ++.+..++.+.+ ..++..-...+..++...-. .....+..+.
T Consensus 500 daniF~eYl---fP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 500 DANIFPEYL---FPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred cchhhHhhh---hhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 334454443 333333333322 22221111222222211100 0111122222
Q ss_pred HHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 275 GSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 275 ~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
...- ..+..++.++..-+|++-+..|+-++.-+++. ..=+-+++++...|+|.+|.+|.+-+..+.-++-..
T Consensus 577 ~~V~------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 577 HTVE------QMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHHH------HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 2221 33456777888899999999987777655441 223457899999999999999999999888777666
Q ss_pred chhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 355 ~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
|... .-+-++|.+.+.|.| +.+.|-..|..+|..+++..- .-++++-++++....+|-.++.-+|..++..|..
T Consensus 649 G~rs---~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~l--l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 649 GWRS---VSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGL--LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred eeee---HHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhcc--cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHH
Confidence 6532 334578999999999 999999999999999998743 2257888999999999999999999999999999
Q ss_pred HHHHhhh
Q 002400 435 VADSSQG 441 (927)
Q Consensus 435 l~~~~~~ 441 (927)
++...+.
T Consensus 723 ~~~~ls~ 729 (1431)
T KOG1240|consen 723 IARQLSA 729 (1431)
T ss_pred HHhhhhh
Confidence 9887765
No 59
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.7e-05 Score=87.94 Aligned_cols=159 Identities=18% Similarity=0.276 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhc
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAM 374 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l 374 (927)
|..-++.+..+..+++..+....+.++.++.....- +.-.++..-.++...+|.++.|++... .+++..+|.|++.+
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~~~L 558 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLFQGL 558 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHHHHh
Confidence 999999999999999988876667777777655432 344589999999999999999998664 68899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHhhh-hhHHhHHHHH
Q 002400 375 DDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQG-QFQKYYDAVM 451 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~--~~~v~~~a~~al~~l~~~~~~-~~~~~~~~i~ 451 (927)
.. +..-..+...+..+|+.|+ +.+.||...++..+-..+... ....+..++.+||.+...... ...+|+..++
T Consensus 559 h~---sk~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 559 HN---SKESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred cC---chHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 76 3344556667999999998 458899999999988887654 367889999999999888774 4567888887
Q ss_pred HHHHHHHhc
Q 002400 452 PYLKAILVN 460 (927)
Q Consensus 452 ~~L~~~l~~ 460 (927)
..+..-++.
T Consensus 635 n~il~qle~ 643 (982)
T KOG2022|consen 635 NPILSQLEI 643 (982)
T ss_pred HHHHHHHHH
Confidence 776666554
No 60
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=3.9e-05 Score=87.86 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=129.1
Q ss_pred HHHHHHHHhhhhcc---cCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHH
Q 002400 614 IDQVAPTLVPLLKF---YFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICA 690 (927)
Q Consensus 614 ~~~~~~~l~~~l~~---~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~ 690 (927)
+..+.|.+.+.+.. +.+++++.+|.-+++.+.-. ..+++..-+|.++..+...
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-----------------Sa~fces~l~llftimeks------- 972 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-----------------SAEFCESHLPLLFTIMEKS------- 972 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHhcC-------
Confidence 44455555555532 34689999999999999643 3456677788888887654
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcH
Q 002400 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFK 770 (927)
Q Consensus 691 ~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~ 770 (927)
.++.+|..++-.+||++-..+.-+.| .-+.|.+.++|+++.||.+|.-.+..++.+.--.++
T Consensus 973 --------------p~p~IRsN~VvalgDlav~fpnlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK 1034 (1251)
T KOG0414|consen 973 --------------PSPRIRSNLVVALGDLAVRFPNLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK 1034 (1251)
T ss_pred --------------CCceeeecchheccchhhhcccccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc
Confidence 46889999999999999988775544 556788899999999999999999999877544444
Q ss_pred HHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCC-CcHHHHHHHHHHHHHHH
Q 002400 771 PLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLK-GDLIEAKVVHAQLCSMV 849 (927)
Q Consensus 771 ~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~-~d~~e~~~~~~~l~~l~ 849 (927)
-+ +..+..++.||+ ..+++-|-.-+..+-. .+. ++-+++|-++.+|... -+++-...++++|..++
T Consensus 1035 Gq----l~eMA~cl~D~~------~~IsdlAk~FF~Els~-k~n--~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~i 1101 (1251)
T KOG0414|consen 1035 GQ----LSEMALCLEDPN------AEISDLAKSFFKELSS-KGN--TIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLI 1101 (1251)
T ss_pred cc----HHHHHHHhcCCc------HHHHHHHHHHHHHhhh-ccc--chhhhchHHHHhhccCcccchhhHHHHHHHHHHh
Confidence 44 444556666774 3344433332222322 222 3667889999998654 34555688999999999
Q ss_pred hcc
Q 002400 850 ERS 852 (927)
Q Consensus 850 ~~~ 852 (927)
++.
T Consensus 1102 kkd 1104 (1251)
T KOG0414|consen 1102 KKD 1104 (1251)
T ss_pred ccc
Confidence 765
No 61
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3e-05 Score=84.79 Aligned_cols=406 Identities=14% Similarity=0.164 Sum_probs=248.0
Q ss_pred hhHHHHHHHHHHHHhhhchHH--HHhhHHHHHHHHHhccCC--C-CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHH
Q 002400 296 WQKHHAVLIALAQIAEGCSKV--MIKNLDQVVSMVLNSFQD--P-HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPAL 370 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~--~~~~l~~l~~~l~~~l~d--~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~l 370 (927)
.-.+.|...+.|..+-...+. +...+ ...+++.+.. + ...+|+..+|.+|++.+. ....+...-+...+
T Consensus 458 ~L~KDAiYaa~g~~a~~l~~~~dF~~Wl---~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~ 531 (978)
T KOG1993|consen 458 LLLKDAIYAAFGLAAYELSNILDFDKWL---QEALLPELANDHGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAF 531 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHH---HHhhCHHhhhcccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHH
Confidence 345666677777665544331 11222 2233333322 2 335699999999998762 33245566678888
Q ss_pred HHhccCCCCchHHHHHHHHHHHhHhcC--CCccccCchHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 371 VGAMDDFQNPRVQAHAASAVLNFSENC--TPDILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 371 l~~l~~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~l~~l~~~L~~~l~~~~-~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
++.++|.++..||-+++.++..+++.. .++.+.||++.+...++++++... ...|...+..++.++...++.+.||.
T Consensus 532 lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~ 611 (978)
T KOG1993|consen 532 LNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA 611 (978)
T ss_pred HHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 899998457889999999999999763 456688999999999999987654 56788999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcc--hhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 002400 448 DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKD--KFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARL 525 (927)
Q Consensus 448 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 525 (927)
..++.++..+|.... ++..+|.+.+.++..++.++|.. .+.|++-.+++......+.. .--+.+-.+..|...
T Consensus 612 ~~ivq~lp~LWe~s~--~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~---hv~L~EDgmeLW~~~ 686 (978)
T KOG1993|consen 612 STIVQYLPLLWEESE--EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPE---HVYLLEDGMELWLTT 686 (978)
T ss_pred HHHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCc---eeehhhhHHHHHHHH
Confidence 999999999998644 56789999999999999999953 34566666666544322110 011334455566655
Q ss_pred HHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHH
Q 002400 526 CKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADE 605 (927)
Q Consensus 526 ~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~ 605 (927)
.... ..+.|-+-.++|.++-.+....+ .--.++..+..++--
T Consensus 687 L~n~-~~l~p~ll~L~p~l~~~iE~ste-------------------------------------~L~t~l~Ii~sYilL 728 (978)
T KOG1993|consen 687 LMNS-QKLTPELLLLFPHLLYIIEQSTE-------------------------------------NLPTVLMIISSYILL 728 (978)
T ss_pred Hhcc-cccCHHHHHHHHHHHHHHHhhhh-------------------------------------hHHHHHHHHHHHHhh
Confidence 5433 44555555566666666543211 012233333333322
Q ss_pred hcccc-cccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcc-C
Q 002400 606 LKEGF-FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHK-E 683 (927)
Q Consensus 606 ~~~~~-~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~-e 683 (927)
.+..| ..|...+...+.+++ .+||.....++-.++..+-+. ++-....+...++|.++..+.. +
T Consensus 729 d~~~fl~~y~~~i~k~~~~~l-----~dvr~egl~avLkiveili~t---------~~il~~~~~~~~L~~lf~~I~~~~ 794 (978)
T KOG1993|consen 729 DNTVFLNDYAFGIFKKLNDLL-----DDVRNEGLQAVLKIVEILIKT---------NPILGSLLFSPLLSRLFLSIAEND 794 (978)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHhh---------hHHHHhhhcchhhHHHHHHHHhCC
Confidence 22222 234445555544443 456766666666665544221 2222344666777877776633 3
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhh----------HHhHHHHHHHHccC-CChhHHh
Q 002400 684 PEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKY----------YDTYLPFLLEACND-KHPDVRQ 752 (927)
Q Consensus 684 ~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~----------~~~ll~~l~~~l~d-~~~~vr~ 752 (927)
+-+-+... -+.+++++.-..++.+... +..++..-+.++.+ .+|.-|.
T Consensus 795 ~yP~~~~~---------------------yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rK 853 (978)
T KOG1993|consen 795 KYPYVMGE---------------------YLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRK 853 (978)
T ss_pred CCchhHHH---------------------HHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhh
Confidence 33333333 3444444443333333322 12233333333443 5778888
Q ss_pred hHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhc
Q 002400 753 AAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIR 785 (927)
Q Consensus 753 ~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 785 (927)
--+-|+..+...+...+...++.|++.....+.
T Consensus 854 l~~LalsSll~t~~~~ila~~~~I~nl~~e~L~ 886 (978)
T KOG1993|consen 854 LNTLALSSLLRTNNPDILAVLDSIMNLWFEVLS 886 (978)
T ss_pred HHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHH
Confidence 777787777777666777777777777766664
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.5e-05 Score=87.34 Aligned_cols=472 Identities=16% Similarity=0.186 Sum_probs=269.5
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+++.+++.-.++.+..+..-+.+-..+ .+--+...+.+.|++++..|...|+.++|.++. .+....+.|
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~qd----vllLltNslknDL~s~nq~vVglAL~alg~i~s-------~Emardlap 145 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDERQD----LLLLLTNSLKNDLNSSNQYVVGLALCALGNICS-------PEMARDLAP 145 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccchH----HHHHHHHHHHhhccCCCeeehHHHHHHhhccCC-------HHHhHHhhH
Confidence 455677877777777766665554332 233456778888999999999999999999875 355678888
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYD 448 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 448 (927)
.+-+.++. +++.||..|.-|...++...+ + ..+.++....+.|.+.+..|-...+..+..++....+. ..|+.
T Consensus 146 eVe~Ll~~-~~~~irKKA~Lca~r~irK~P-~----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~-l~~fr 218 (866)
T KOG1062|consen 146 EVERLLQH-RDPYIRKKAALCAVRFIRKVP-D----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA-LSYFR 218 (866)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHHcCc-h----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH-HHHHH
Confidence 88899998 999999999999999998875 3 24455566667777777777777777777777665433 34555
Q ss_pred HHHHHHHHHHhcccC----c-------chhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHH
Q 002400 449 AVMPYLKAILVNAND----K-------SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSY 517 (927)
Q Consensus 449 ~i~~~L~~~l~~~~~----~-------~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 517 (927)
.+++-+...+++-.. + .++-++.+.+..++.++
T Consensus 219 ~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG------------------------------------ 262 (866)
T KOG1062|consen 219 DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG------------------------------------ 262 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc------------------------------------
Confidence 566666666554211 1 11112222222222211
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHH
Q 002400 518 MLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACN 597 (927)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~ 597 (927)
.+= +-....|..++..+..+.+. ..++-..++-| +.+
T Consensus 263 -------------q~d-~daSd~M~DiLaqvatntds--------------------------skN~GnAILYE---~V~ 299 (866)
T KOG1062|consen 263 -------------QND-ADASDLMNDILAQVATNTDS--------------------------SKNAGNAILYE---CVR 299 (866)
T ss_pred -------------CCC-ccHHHHHHHHHHHHHhcccc--------------------------cccchhHHHHH---HHH
Confidence 110 01112222222222111100 00000111100 000
Q ss_pred HHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 002400 598 MLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALV 677 (927)
Q Consensus 598 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 677 (927)
.+. +-..+...|..|+.+|++++..- ..+ .+| --+..|+
T Consensus 300 ----------------------TI~---~I~~~~~LrvlainiLgkFL~n~----------d~N----irY--vaLn~L~ 338 (866)
T KOG1062|consen 300 ----------------------TIM---DIRSNSGLRVLAINILGKFLLNR----------DNN----IRY--VALNMLL 338 (866)
T ss_pred ----------------------HHH---hccCCchHHHHHHHHHHHHhcCC----------ccc----eee--eehhhHH
Confidence 011 11225667777777777776431 001 011 1233344
Q ss_pred HHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHH
Q 002400 678 EALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYG 757 (927)
Q Consensus 678 ~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~ 757 (927)
..+..|++. +..=-..+-+|++ |.+...|+-|+...-.++... + +..+...++..|...+++.|...+..
T Consensus 339 r~V~~d~~a--vqrHr~tIleCL~--DpD~SIkrralELs~~lvn~~--N----v~~mv~eLl~fL~~~d~~~k~~~as~ 408 (866)
T KOG1062|consen 339 RVVQQDPTA--VQRHRSTILECLK--DPDVSIKRRALELSYALVNES--N----VRVMVKELLEFLESSDEDFKADIASK 408 (866)
T ss_pred hhhcCCcHH--HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhccc--c----HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 444444331 1111122233332 567888999988887777643 2 34455566666666688999999999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHH
Q 002400 758 IGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIE 837 (927)
Q Consensus 758 lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e 837 (927)
+..+++.-...=.-|+..++..+.. . -..|++.+...+-+++...++..+-..+...|....-...-..+
T Consensus 409 I~~laEkfaP~k~W~idtml~Vl~~----a------G~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is 478 (866)
T KOG1062|consen 409 IAELAEKFAPDKRWHIDTMLKVLKT----A------GDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS 478 (866)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHh----c------ccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh
Confidence 9999987544444555555554442 1 12377888899999998876666666666666554432100111
Q ss_pred HHHHHHHHHHHHhccCCcccC------CCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCCh--hhHHHH
Q 002400 838 AKVVHAQLCSMVERSDGEILG------PNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPP--STLAST 909 (927)
Q Consensus 838 ~~~~~~~l~~l~~~~~~~~~~------~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ 909 (927)
.....+...|-+-.|....+. +-...-..++.++..++... .++..++.-.+..+-.+-+.++. +.++++
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~--~s~~~tk~yal~Al~KLSsr~~s~~~ri~~l 556 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH--SSDSTTKGYALTALLKLSSRFHSSSERIKQL 556 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 223344455555555433222 11123467788888877643 45688899888888888888774 345555
Q ss_pred H----hcCCHHHHHH
Q 002400 910 W----SSLQPQQQLA 920 (927)
Q Consensus 910 ~----~~l~~~~~~~ 920 (927)
. .++.-+.|++
T Consensus 557 I~~~~~s~~~elQQR 571 (866)
T KOG1062|consen 557 ISSYKSSLDTELQQR 571 (866)
T ss_pred HHHhcccccHHHHHH
Confidence 4 3455555554
No 63
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.11 E-value=3.2e-07 Score=100.52 Aligned_cols=387 Identities=18% Similarity=0.175 Sum_probs=244.0
Q ss_pred HHHHhccCCCCH---HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC----CCCchHHHHHHHHHHHhHhcCC
Q 002400 326 SMVLNSFQDPHP---RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD----FQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 326 ~~l~~~l~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~----~~~~~v~~~a~~al~~l~~~~~ 398 (927)
|.++..|.|.++ .-....+.+++.++.. ...+..+++.++..+.. ..+......++.++..+.+...
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~------~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~ 75 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS------PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQ 75 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC------hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 566777776654 4567778888888763 23455566666655542 1244555667777777776654
Q ss_pred Ccc----ccCchHH-HHHHHHHHhcCCC-------hhHHHHHHHHHHHHHHHhhhhh-HHhHHHHHHHHHH-----HHhc
Q 002400 399 PDI----LTPYLDG-IVSKLLVLLQNGK-------QMVQEGALTALASVADSSQGQF-QKYYDAVMPYLKA-----ILVN 460 (927)
Q Consensus 399 ~~~----~~~~l~~-l~~~L~~~l~~~~-------~~v~~~a~~al~~l~~~~~~~~-~~~~~~i~~~L~~-----~l~~ 460 (927)
.+. ..-|... +++.++...-... ..+-+.+...++.++...+.+- ...++.+...+.. -+..
T Consensus 76 ~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 76 EDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred cccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCc
Confidence 332 2234443 7777776543221 2333333344444444443321 1233344433330 0000
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhh
Q 002400 461 ANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVV 540 (927)
Q Consensus 461 ~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i 540 (927)
... .........+-....+..++.++.-.|...++++.++.+.... .+...+..+.++++.++..++.+= .+..+
T Consensus 156 ~~~-~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~~la~LvNK~~~~~--~l~~~ 230 (415)
T PF12460_consen 156 SSS-TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS--EDEFSRLAALQLLASLVNKWPDDD--DLDEF 230 (415)
T ss_pred ccc-ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCChh--hHHHH
Confidence 000 0001122234445566666776666567777777777643321 235678888888888887753321 34444
Q ss_pred HHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 002400 541 MPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPT 620 (927)
Q Consensus 541 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 620 (927)
+..+........ + ...+..+++.+.++.+++=-...|...+++..
T Consensus 231 l~~~~~~~~~~~----------------~-------------------~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~ 275 (415)
T PF12460_consen 231 LDSLLQSISSSE----------------D-------------------SELRPQALEILIWITKALVMRGHPLATELLDK 275 (415)
T ss_pred HHHHHhhhcccC----------------C-------------------cchhHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 444444441000 0 01245677888888888766667888888888
Q ss_pred HhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhh
Q 002400 621 LVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESI 700 (927)
Q Consensus 621 l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~ 700 (927)
++.++++ +++...++++++-++........+..+.....-|-++++..++|.+++.+.+.+
T Consensus 276 L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~---------------- 336 (415)
T PF12460_consen 276 LLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD---------------- 336 (415)
T ss_pred HHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC----------------
Confidence 8888875 789999999999887653222111111112234678899999999999887643
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHhhhhhh-hhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHH
Q 002400 701 QGKDKTAEERRIAICIFDDVMEHCREAAL-KYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSR 779 (927)
Q Consensus 701 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~ 779 (927)
...|...+.+++.++++.|..+. ++++.++|.+++.+.-+|++++.++..++..+....++.+.+|+..+++.
T Consensus 337 ------~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 337 ------DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPR 410 (415)
T ss_pred ------hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 34778889999999999987765 69999999999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 002400 780 LDFV 783 (927)
Q Consensus 780 L~~~ 783 (927)
|.++
T Consensus 411 LL~l 414 (415)
T PF12460_consen 411 LLKL 414 (415)
T ss_pred HHhc
Confidence 8753
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.7e-06 Score=91.25 Aligned_cols=394 Identities=18% Similarity=0.247 Sum_probs=232.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTL 185 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (927)
+.|-+-|.+. +..+...+--+++.|+. | .--+++.|.+..++++.++.+|+-|..|...+....|+. +..+
T Consensus 110 NslknDL~s~-nq~vVglAL~alg~i~s---~-EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSS-NQYVVGLALCALGNICS---P-EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VEHF 180 (866)
T ss_pred HHHHhhccCC-CeeehHHHHHHhhccCC---H-HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HHHh
Confidence 3333334433 44444433345554443 3 445899999999999999999999999999999988885 4557
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC-----------ChhHHHHHHHH
Q 002400 186 HEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG-----------NESSAQEALEL 254 (927)
Q Consensus 186 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~-----------~~~~~~~a~~~ 254 (927)
++.+.+.|.+.+..|..+++..+..++ .. +++....|.+++|.++..+.++..++ |+=.....+.+
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c-~~--~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELC-KI--SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHH-hc--CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 777888888888899999999988888 43 33446788899999999999887643 22223344444
Q ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHh----------------------hcc-------CchhhhhCCcchhHHHHHHHH
Q 002400 255 LIELAATEPRFLRKQLVDVVGSMLQVA----------------------EAE-------AVFPGFLAAPEWQKHHAVLIA 305 (927)
Q Consensus 255 l~~l~~~~~~~~~~~l~~ll~~ll~~~----------------------~~~-------~~i~~~l~~~~~~~r~aal~a 305 (927)
+.-+-.+++.. ...+..++......+ .+. ..+.+++.+.+-..|+-|+..
T Consensus 258 LriLGq~d~da-Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 258 LRILGQNDADA-SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHhcCCCccH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 43333332211 111111211111111 110 233344445555555555555
Q ss_pred HHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHH
Q 002400 306 LAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAH 385 (927)
Q Consensus 306 l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~ 385 (927)
|..+...-+.....|- ..++.+|+|+++.+|+.|+...-.+... ..+..++..++..|.. .++..+..
T Consensus 337 L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~-------~Nv~~mv~eLl~fL~~-~d~~~k~~ 404 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNE-------SNVRVMVKELLEFLES-SDEDFKAD 404 (866)
T ss_pred HHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHh-ccHHHHHH
Confidence 5555554444333333 3567789999999999999998887762 4455677778888887 67888888
Q ss_pred HHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHHHHHHhcccCc
Q 002400 386 AASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY-DAVMPYLKAILVNANDK 464 (927)
Q Consensus 386 a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~ 464 (927)
..+-+..+++...++. ..-++.+++.+...-..|+..+...+-.++.....+...|. ..+...+...-. .+.
T Consensus 405 ~as~I~~laEkfaP~k-----~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~--~~i 477 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDK-----RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTL--LDI 477 (866)
T ss_pred HHHHHHHHHHhcCCcc-----hhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh--hhh
Confidence 8888888888876542 22334444555555556666666655555544422222221 111111111100 011
Q ss_pred chhhHHHHHHHHHHHHHHhh--C--cch-hhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccc
Q 002400 465 SNRMLRAKSMECISLVGMAV--G--KDK-FRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQE 532 (927)
Q Consensus 465 ~~~~lr~~a~~~l~~l~~~~--~--~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (927)
+...+-..+..|+|..+.-+ | .+. ...--..++..+....... ..+...+.|++.++..+...+...
T Consensus 478 s~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 478 SQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred hhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 23344566888999888321 1 111 1112234555554433322 233568889998888887766554
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.07 E-value=1.2e-08 Score=102.76 Aligned_cols=182 Identities=20% Similarity=0.344 Sum_probs=135.7
Q ss_pred CCcchhHHHHHHHHHHHHhhhc-----hHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhH
Q 002400 292 AAPEWQKHHAVLIALAQIAEGC-----SKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRL 366 (927)
Q Consensus 292 ~~~~~~~r~aal~al~~i~~~~-----~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~i 366 (927)
.+.+|..|..|+..|..+..+. ...+...+..++..+...+.|....|...|+.+++.++..++..+ .++...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~-~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF-EPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-HHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHH
Confidence 5689999999999999998876 223445566667888899999999999999999999999999887 7889999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHH-HHHHHHHhcCCChhHHHHHHHHHHHHHHHhh---hh
Q 002400 367 LPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVADSSQ---GQ 442 (927)
Q Consensus 367 l~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l-~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~---~~ 442 (927)
+|.|++.+.+ ++..++..|..+|..+++.++ +.+.+ ...+....++.++.+|..++..+..+....+ ..
T Consensus 96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 9999999999 889999999999999998875 22334 6777778899999999999999999998888 44
Q ss_pred hHH--hHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 443 FQK--YYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 443 ~~~--~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
+.. .++.+.+.+...+.+ .+..+|..|-+++..+....|
T Consensus 169 l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred hcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 443 457888888888765 567899999999999987777
No 66
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.07 E-value=5.9e-06 Score=94.48 Aligned_cols=140 Identities=19% Similarity=0.100 Sum_probs=110.6
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHh--h-------cchhhHHHHHHHHHHHHHhccC
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQ--N-------ETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~--~-------~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
++..++|+.|++.++..+..+ ...++-+..+.+...++..+. . .....||.+.+++++...++..
T Consensus 88 ~~~we~rhg~~i~lrei~~~h------~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~ 161 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTH------GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMD 161 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHh------cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhh
Confidence 788999999999999999887 555555555544444444332 1 1234789999999999998876
Q ss_pred CCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 137 PDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+ ....+.+..+.+++..++.+.|++++..+.+......+.+....+.+++.+..++.|++.+||..|...+....
T Consensus 162 ~-s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~ 236 (1549)
T KOG0392|consen 162 E-SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP 236 (1549)
T ss_pred h-HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence 6 55667888888888888999999999999887776556555667788999999999999999999998888766
No 67
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-08 Score=100.43 Aligned_cols=361 Identities=13% Similarity=0.132 Sum_probs=228.4
Q ss_pred cCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC--Ccc
Q 002400 65 SSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG--DWP 142 (927)
Q Consensus 65 ~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~--~w~ 142 (927)
.+.++.+.-.|+..+.|+..... ....--.+. .+-..+++ +..+ ...+|.....||..++..+..+. .-.
T Consensus 95 qs~d~~Iq~aa~~alGnlAVn~e-nk~liv~l~-----Gl~~Li~q-mmtd-~vevqcnaVgCitnLaT~d~nk~kiA~s 166 (550)
T KOG4224|consen 95 QSCDKCIQCAAGEALGNLAVNME-NKGLIVSLL-----GLDLLILQ-MMTD-GVEVQCNAVGCITNLATFDSNKVKIARS 166 (550)
T ss_pred hCcchhhhhhhhhhhccceeccC-CceEEEecc-----ChHHHHHH-hcCC-CcEEEeeehhhhhhhhccccchhhhhhc
Confidence 47788888889999887764430 000000111 11122333 3333 66788888889999887754322 123
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK 222 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 222 (927)
.-+..+..+.++.+..++..+..+|..+.......-.-.-..-+|++...+.+.+..+|+.++.+++.+. - +.-.+
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa-V---d~~~R 242 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA-V---DRRAR 242 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh-h---hHHHH
Confidence 4455666677888999999999988887655443211112234788899999999999999999999987 2 11124
Q ss_pred HhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhcc-----------------
Q 002400 223 ERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAE----------------- 284 (927)
Q Consensus 223 ~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~----------------- 284 (927)
+.+..-=|.++..+.+++.++++.+..+|-..+..++... .+..+.+. .-+|.++++++++
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI 321 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence 4555555777888888888889999888888887776542 22222111 1122222221111
Q ss_pred -----------Cchh---hhhC-CcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHH
Q 002400 285 -----------AVFP---GFLA-APEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIG 348 (927)
Q Consensus 285 -----------~~i~---~~l~-~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~ 348 (927)
.|+. ..+. .++-..+..|...|..++............ ..+|.+...+.|....||....-|++
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 1221 2232 345567788888888877644332222222 34677777888888889888888888
Q ss_pred HhHhhhchhHHHH-hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC-----ccccCchHHHHHHHHHHhcCCCh
Q 002400 349 QLSTDLGPELQTQ-FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP-----DILTPYLDGIVSKLLVLLQNGKQ 422 (927)
Q Consensus 349 ~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~-----~~~~~~l~~l~~~L~~~l~~~~~ 422 (927)
+++-.- ..... .-..++|.|+....+ .+.+||..|+.+|.++++.... +....-.+.+-..|.+.+.+...
T Consensus 402 ~Lal~d--~~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~ 478 (550)
T KOG4224|consen 402 QLALND--NDKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHEL 478 (550)
T ss_pred HHHhcc--ccHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHH
Confidence 776532 22112 234689999999999 8999999999999999876431 00111125666777777777777
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 002400 423 MVQEGALTALASVADSSQG 441 (927)
Q Consensus 423 ~v~~~a~~al~~l~~~~~~ 441 (927)
.++..+.++|..+......
T Consensus 479 tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 479 TFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 7888888888887765443
No 68
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.05 E-value=2.3e-09 Score=88.34 Aligned_cols=94 Identities=27% Similarity=0.346 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCC
Q 002400 298 KHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDF 377 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 377 (927)
.|.+++.+|++++.+.+..+.++++.+++.++..+.|++++||+.||.++..++......+ -.+++++++.|.+.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 6899999999999999999999999999999999999999999999999999999888777 56999999999999999
Q ss_pred CCchHHHHHHHHHHHhH
Q 002400 378 QNPRVQAHAASAVLNFS 394 (927)
Q Consensus 378 ~~~~v~~~a~~al~~l~ 394 (927)
+++.||.+| ..|.++.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998877 4555544
No 69
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.9e-06 Score=93.73 Aligned_cols=299 Identities=14% Similarity=0.140 Sum_probs=195.9
Q ss_pred hcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhh
Q 002400 114 NETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFL 193 (927)
Q Consensus 114 ~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l 193 (927)
.++.+.||+.+|.+|-++.+.+. .+-++++..+-.++.+.++-+.-.|+.++..+|...-+-+-.++..+..++.
T Consensus 153 ~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~--- 227 (968)
T KOG1060|consen 153 TDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLP--- 227 (968)
T ss_pred cCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhcc---
Confidence 35688999999999999877653 3556888888888999999999999999999987665555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCchh----------------------HH-hHHhhHHHHHHHHHHHHhcCChhHHHH
Q 002400 194 GSNNFDLRIAALEATVNFIMNCLPSLGE----------------------KE-RFLDLLPLMMRTLTEALNKGNESSAQE 250 (927)
Q Consensus 194 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~----------------------~~-~~~~~~p~ll~~l~~~l~~~~~~~~~~ 250 (927)
|-+.==+...+..|..+++..+.++.. .+ ...+=+..+++....++.+.+..+...
T Consensus 228 -dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA 306 (968)
T KOG1060|consen 228 -DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMA 306 (968)
T ss_pred -chhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHH
Confidence 322223445666677776444443200 00 011224456677777788888888888
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHh
Q 002400 251 ALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLN 330 (927)
Q Consensus 251 a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~ 330 (927)
+...+..++... -.......++..| -.+..+++..+..+..++...+..+.+|+..++
T Consensus 307 ~aql~y~lAP~~--~~~~i~kaLvrLL---------------rs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----- 364 (968)
T KOG1060|consen 307 VAQLFYHLAPKN--QVTKIAKALVRLL---------------RSNREVQYVVLQNIATISIKRPTLFEPHLKSFF----- 364 (968)
T ss_pred HHhHHHhhCCHH--HHHHHHHHHHHHH---------------hcCCcchhhhHHHHHHHHhcchhhhhhhhhceE-----
Confidence 888888776431 2222233333322 145667888888888888887776666665432
Q ss_pred ccCCCCH-HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHH
Q 002400 331 SFQDPHP-RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGI 409 (927)
Q Consensus 331 ~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l 409 (927)
+...+| .+.---+..|..++. ......+++.+...+.+ .+.++...+..+++.++.... ..-+..
T Consensus 365 -v~ssDp~~vk~lKleiLs~La~-------esni~~ILrE~q~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tC 430 (968)
T KOG1060|consen 365 -VRSSDPTQVKILKLEILSNLAN-------ESNISEILRELQTYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTC 430 (968)
T ss_pred -eecCCHHHHHHHHHHHHHHHhh-------hccHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHH
Confidence 122223 233333445555544 24556788888888888 555788888888888877654 334677
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHH
Q 002400 410 VSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYL 454 (927)
Q Consensus 410 ~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L 454 (927)
+..|+.++++.+..|..++...|..+...-+..-.+++..+...+
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll 475 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 888888888888888888888888888776654444444444333
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.03 E-value=2.2e-05 Score=82.46 Aligned_cols=527 Identities=15% Similarity=0.148 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhc-cCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH
Q 002400 101 QANLKSVLLVQLQNET--NKSIIKKICDAVSELAAS-VLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV 177 (927)
Q Consensus 101 ~~~ik~~Ll~~l~~~~--~~~vr~~~~~~i~~ia~~-~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 177 (927)
+-++-+-..+.+.+.+ ...-|+.+......++.. .+|..+-.+++-.+..+.++.++..|...+.++..+.....+.
T Consensus 20 ~~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv 99 (898)
T COG5240 20 ERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV 99 (898)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh
Confidence 4445555666666432 223344333333333322 2233344567778888999999999998888888877655443
Q ss_pred HHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002400 178 LIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLI 256 (927)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~ 256 (927)
+ -....+++-++.. +..+|-.|++.|..++ . .+ .++.+-..+.+.+-+.....+..++-.-.
T Consensus 100 l-----m~tssiMkD~~~g~~~~~kp~AiRsL~~Vi-d----~~-------tv~~~er~l~~a~Vs~~~a~~saalv~aY 162 (898)
T COG5240 100 L-----MGTSSIMKDLNGGVPDDVKPMAIRSLFSVI-D----GE-------TVYDFERYLNQAFVSTSMARRSAALVVAY 162 (898)
T ss_pred h-----HHHHHHHHhhccCCccccccHHHHHHHHhc-C----cc-------hhhhHHHHhhhhccccchhhhhhHHHHhh
Confidence 2 1234455555555 3478989999888887 2 21 22333333333333333333333332222
Q ss_pred HHHccCcHHHHHHHHHHHHHHHHHhhccCchhh---hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC
Q 002400 257 ELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPG---FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ 333 (927)
Q Consensus 257 ~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~---~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~ 333 (927)
.+........+......-...+.+.+.+ +... +--+.++-..+ .++|-+...-.. -+-.+..++..+.....
T Consensus 163 hLlp~~~~~~~rw~ne~qeav~~l~q~p-~~~~n~gy~Pn~~~isqY---HalGlLyq~kr~-dkma~lklv~hf~~n~s 237 (898)
T COG5240 163 HLLPNNFNQTKRWLNETQEAVLDLKQFP-NQHGNEGYEPNGNPISQY---HALGLLYQSKRT-DKMAQLKLVEHFRGNAS 237 (898)
T ss_pred hhccccHHHHHHHHHHHHHHHhhHhhCc-CccCCcccCCCCChHHHH---HHHHHHHHHhcc-cHHHHHHHHHHhhcccc
Confidence 2222222222223322222222222111 1100 00012232222 334333322110 00011223333322221
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC-CCccccCchHHHHHH
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC-TPDILTPYLDGIVSK 412 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~l~~l~~~ 412 (927)
..-+.+....+....+.+..+ .+++.++.|.|-..+.+ +-..|.-.++.++..+.... ++ .++++.++.
T Consensus 238 ---mknq~a~V~lvr~~~~ll~~n--~q~~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~nv~~----~~~~~~vs~ 307 (898)
T COG5240 238 ---MKNQLAGVLLVRATVELLKEN--SQALLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEENVGS----QFVDQTVSS 307 (898)
T ss_pred ---cccchhheehHHHHHHHHHhC--hHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 111222222222222222222 36778888888888888 77888888888888877554 32 367888899
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhh
Q 002400 413 LLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDD 492 (927)
Q Consensus 413 L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~ 492 (927)
|...|++.....|-.|+..+..++...+.... ..-+-+..++.+ +++.+-.. ++..+...-..+...
T Consensus 308 L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd----~Nr~Isty---AITtLLKTGt~e~id-- 374 (898)
T COG5240 308 LRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS----VCNKEVESLISD----ENRTISTY---AITTLLKTGTEETID-- 374 (898)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHhhCCceee----ecChhHHHHhhc----ccccchHH---HHHHHHHcCchhhHH--
Confidence 99999998888999999999999877665321 112233333332 33334333 344444333323333
Q ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchh
Q 002400 493 AKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESI 572 (927)
Q Consensus 493 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 572 (927)
.+++.+.+.... ..|..+..++.++..++..++.....|+.-+...+++ + .+.
T Consensus 375 --rLv~~I~sfvhD---~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~----e------------------Gg~ 427 (898)
T COG5240 375 --RLVNLIPSFVHD---MSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ----E------------------GGL 427 (898)
T ss_pred --HHHHHHHHHHHh---hccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh----c------------------ccc
Confidence 333333332211 2234566677788888877777666665554444432 1 111
Q ss_pred hhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHH
Q 002400 573 QTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAV 652 (927)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~ 652 (927)
+=|..+.++++.+.+..+.. -+..+..+...+.++....| +...|+-|-+
T Consensus 428 -----------------eFK~~~Vdaisd~~~~~p~s----kEraLe~LC~fIEDcey~~I---~vrIL~iLG~------ 477 (898)
T COG5240 428 -----------------EFKKYMVDAISDAMENDPDS----KERALEVLCTFIEDCEYHQI---TVRILGILGR------ 477 (898)
T ss_pred -----------------hHHHHHHHHHHHHHhhCchH----HHHHHHHHHHHHhhcchhHH---HHHHHHHhcc------
Confidence 12444555555544432221 12333334444443322221 2222222211
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhH
Q 002400 653 EKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYY 732 (927)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 732 (927)
.|+.......|++.+++.++ + ++..+|..|+.+|..++-...+.+ ..
T Consensus 478 -EgP~a~~P~~yvrhIyNR~i------L------------------------EN~ivRsaAv~aLskf~ln~~d~~--~~ 524 (898)
T COG5240 478 -EGPRAKTPGKYVRHIYNRLI------L------------------------ENNIVRSAAVQALSKFALNISDVV--SP 524 (898)
T ss_pred -cCCCCCCcchHHHHHHHHHH------H------------------------hhhHHHHHHHHHHHHhccCccccc--cH
Confidence 11111222233444444332 1 246789999999988766544432 22
Q ss_pred HhHHHHHHHHccCCChhHHhhHhHHHHHHH
Q 002400 733 DTYLPFLLEACNDKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 733 ~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~ 762 (927)
+.+...+.++++|.|.+||..|++++..+-
T Consensus 525 ~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 525 QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 355567778899999999999999988765
No 71
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.99 E-value=1.3e-06 Score=94.37 Aligned_cols=387 Identities=13% Similarity=0.135 Sum_probs=210.4
Q ss_pred CCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc-ccCcchhhHHHHHHHH
Q 002400 398 TPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN-ANDKSNRMLRAKSMEC 476 (927)
Q Consensus 398 ~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~~~~lr~~a~~~ 476 (927)
+++.+.|+...++..|+..+......--+..+.|+..+....++...|+...+++.|...+.. ..++.++..-...+|+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 456789999999999999998765555677889999999999999999999999998888765 3345567777788999
Q ss_pred HHHHHHhhCcch---hhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhc-cccccchhhhHHHHHHHcccCC
Q 002400 477 ISLVGMAVGKDK---FRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLG-QEFIPYMSVVMPPLLQSAQLKP 552 (927)
Q Consensus 477 l~~l~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~l~~~~ 552 (927)
++.+.+.+.... ...+-..+++.+..+..... .+..+|+++.++.+.+..+ ..+.+....++|.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 999998765321 22334445555544433322 3467888888888877765 556666666666665221
Q ss_pred CccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccccc--ccHHHHHHHHhhhhcccCc
Q 002400 553 DVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYFH 630 (927)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~~~ 630 (927)
-|+.. +.+ -...++|..+....+..+. +++..++...
T Consensus 169 ------------------lWe~~-----------gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvF--------- 207 (435)
T PF03378_consen 169 ------------------LWERR-----------GNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVF--------- 207 (435)
T ss_dssp ------------------GGGST-----------TTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHH---------
T ss_pred ------------------hhccC-----------CCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHH---------
Confidence 12210 000 1122334433333222211 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhH
Q 002400 631 EEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEER 710 (927)
Q Consensus 631 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r 710 (927)
.+|+. . ...-
T Consensus 208 -------------------------------------------QkLi~---s------------------------k~~D 217 (435)
T PF03378_consen 208 -------------------------------------------QKLIA---S------------------------KAND 217 (435)
T ss_dssp -------------------------------------------HHHHT----------------------------TTCH
T ss_pred -------------------------------------------HHHHC---C------------------------CCcc
Confidence 11111 1 1122
Q ss_pred HHHHHHHHHHHHHhhhh-hhhhHHhHHHHHHHHcc-CCChhHHhhHhHHHHHHHhhcC-CCcHHHHH--------HHHHH
Q 002400 711 RIAICIFDDVMEHCREA-ALKYYDTYLPFLLEACN-DKHPDVRQAAVYGIGVCAEFGG-SVFKPLVG--------EALSR 779 (927)
Q Consensus 711 ~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~-d~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~--------~il~~ 779 (927)
..++..|..++.+++.. +.+|++.++..++.++. .+.+..++..+..++.++...| +.+...+. .++..
T Consensus 218 ~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~ 297 (435)
T PF03378_consen 218 HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEK 297 (435)
T ss_dssp HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHH
Confidence 44788899999999774 67899999999999987 4445555555555555554433 22222222 22221
Q ss_pred H-HHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccC
Q 002400 780 L-DFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILG 858 (927)
Q Consensus 780 L-~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~ 858 (927)
+ .+-+.. -....-|.-++.++.+++-..+.. ..+.- ......+.++..+++........
T Consensus 298 v~lp~~~k-----~~~~~erKi~~vGltkLL~es~~~--~~~~~-------------~~w~~ll~~Ll~ll~~p~~~~~~ 357 (435)
T PF03378_consen 298 VWLPDLQK-----VSGPIERKICAVGLTKLLCESPAF--LSEYS-------------QLWPPLLEALLKLLERPPEASAA 357 (435)
T ss_dssp THHHHGGG-------SHHHHHHHHHHHHHHHHSSTTH--HHH-C-------------HHHHHHHHHHHHHHHTTSTT-S-
T ss_pred HhcCchhh-----cCCcchhhHHHHHHHHHHhccHhh--hhHHH-------------HHHHHHHHHHHHHHcCCcccccc
Confidence 1 111111 012334666778888887543221 11111 33456777888888653322221
Q ss_pred CCCCChhHHHH----HHHHHhcCC----C--CCC---cHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CCHHHHHHHHHh
Q 002400 859 PNHQYLPKIVT----IFAEVLCGG----K--DLV---TEQTASRMINLLRQLQQSLPPSTLASTWSS-LQPQQQLALQSI 924 (927)
Q Consensus 859 ~~~~~~~~i~~----~~~~~l~~~----~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~l~~~ 924 (927)
..++...... -+.....+. + .++ -.+.|.-+.+.|+.+.+..|+. +..++++ |+++.|.+|+++
T Consensus 358 -~~e~~~~~~d~~~~gy~~~fs~L~~a~~~~~Dp~~~i~d~~~~~~~~L~~~~~~~~G~-~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 358 -DEEDFIDEEDVEDIGYQVSFSKLAFAGKKPRDPLPEIPDPKQYLAQSLSKLSQAHPGK-IPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp ----S-----------TT-GGG--GGG------S-TTTTCHHHHHHHHHHHHHHHTTSS-HHHHHGGGS-HHHHHHHHH-
T ss_pred -ccccccccccchhcccchhhHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCc-hHHHHHhhCCHHHHHHhccC
Confidence 1111111111 111111110 0 011 2357889999999999999977 7777766 999999999875
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.5e-05 Score=82.60 Aligned_cols=225 Identities=18% Similarity=0.241 Sum_probs=152.6
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHH
Q 002400 127 AVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALE 206 (927)
Q Consensus 127 ~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~ 206 (927)
+++-+.....| +--.++-+.++.++++..+-+|..|+.++..++-.+|+.+.+.++ -|..-|.|+++.|..+|+.
T Consensus 129 AL~GLS~fvTp-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~ 203 (877)
T KOG1059|consen 129 ALSGLSCIVTP-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFP----RLVEKLEDPDPSVVSAAVS 203 (877)
T ss_pred eecccccccCc-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHH----HHHHhccCCCchHHHHHHH
Confidence 34444444344 445788999999999999999999999999999999998766555 4566788999999999999
Q ss_pred HHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH--------
Q 002400 207 ATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSML-------- 278 (927)
Q Consensus 207 ~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll-------- 278 (927)
.++.++ +.-+ +.|-++-|.+...+.. +.+.-+....+..|..+...+|+.-++.++.+...+-
T Consensus 204 VICELA-rKnP-----knyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLl 274 (877)
T KOG1059|consen 204 VICELA-RKNP-----QNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLL 274 (877)
T ss_pred HHHHHH-hhCC-----cccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHH
Confidence 999999 4321 2344555655555542 3333344556666666665555554444433332211
Q ss_pred -HH------------hhcc--------CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCH
Q 002400 279 -QV------------AEAE--------AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHP 337 (927)
Q Consensus 279 -~~------------~~~~--------~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 337 (927)
+. +.|. +-+..++.+.+...|+-++.+++.++...+..+..|. +.++++|.|.++
T Consensus 275 YECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~ 350 (877)
T KOG1059|consen 275 YECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDE 350 (877)
T ss_pred HHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCc
Confidence 10 0011 2334567788999999999999999998877555444 467788999999
Q ss_pred HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 338 RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 338 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
.+|-.|+..+.-+.. ...+..++..|+..+..
T Consensus 351 SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 351 SIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVEK 382 (877)
T ss_pred hhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHh
Confidence 999999998876654 23444555555555544
No 73
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=0.00039 Score=81.94 Aligned_cols=360 Identities=14% Similarity=0.150 Sum_probs=190.0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 002400 105 KSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDT 184 (927)
Q Consensus 105 k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~ 184 (927)
-..++..+. ++...+|..+-.|++.|+..+..--.-|++...+-..+.+....+|++|+.+++..+-..++. ..+
T Consensus 818 Lk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~----~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL----IFQ 892 (1692)
T ss_pred HHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH----HHH
Confidence 345556666 558899999999999999876543456778888888888899999999999999988777774 455
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC-c
Q 002400 185 LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE-P 263 (927)
Q Consensus 185 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~ 263 (927)
.+..+...+.|++..||..+++.+..++ ...+ .|......+.+.+.. +++++..+...+++.+..+==.+ +
T Consensus 893 yY~~i~erIlDtgvsVRKRvIKIlrdic-~e~p------df~~i~~~cakmlrR-v~DEEg~I~kLv~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 893 YYDQIIERILDTGVSVRKRVIKILRDIC-EETP------DFSKIVDMCAKMLRR-VNDEEGNIKKLVRETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCC------ChhhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHhccCCC
Confidence 6667777888999999999999999998 5442 233333333333332 22222336666776665542111 1
Q ss_pred H-HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHH-HHH---HHHHhhhchHHHHh---hHHHHHHH-HH-----
Q 002400 264 R-FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV-LIA---LAQIAEGCSKVMIK---NLDQVVSM-VL----- 329 (927)
Q Consensus 264 ~-~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa-l~a---l~~i~~~~~~~~~~---~l~~l~~~-l~----- 329 (927)
. .-.+....-++........ ...-..+|...--- +.- ++....+..+.... +.-.++.. +.
T Consensus 965 ~~~d~~~~~~kI~~~~~vv~~-----~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~e 1039 (1692)
T KOG1020|consen 965 EVNDQPAKARKISLEVDVVMS-----QVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISE 1039 (1692)
T ss_pred cccccHHHHHhhHHHHHHHHH-----HHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHh
Confidence 1 0111111111111110000 00001112111000 000 00111111111111 11111111 11
Q ss_pred ---hccCCCCHHHHH-HHHHHHHHhHhhhchhHHH-HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400 330 ---NSFQDPHPRVRW-AAINAIGQLSTDLGPELQT-QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP 404 (927)
Q Consensus 330 ---~~l~d~~~~vr~-~a~~~l~~~~~~~~~~~~~-~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 404 (927)
....+.+..+|. +.+.+|..|+... |.... .|.-.+.|-|...........+-.+.+..|..++.... ..-..
T Consensus 1040 v~~~~~~~~~~~~~~~~~lstL~~Fskir-P~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~-~~ses 1117 (1692)
T KOG1020|consen 1040 VESDDMNEEESEVRLLAYLSTLFVFSKIR-PQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVA-NPSES 1117 (1692)
T ss_pred hhhHhhhcccchhHHHHHHHHHHHHHhcC-chhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhc-cchHH
Confidence 122344555654 4455666666543 33333 56666666666553331234455555555555554443 11124
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH---hcccCcc----hhhHHHHHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAIL---VNANDKS----NRMLRAKSMECI 477 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l---~~~~~~~----~~~lr~~a~~~l 477 (927)
++..+=+.|+..+-.....+...|+.|+++++.....++. ....++......+ +...+.+ ....-.+.+-|+
T Consensus 1118 fL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~-~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsiftl 1196 (1692)
T KOG1020|consen 1118 FLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK-VVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTL 1196 (1692)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHH
Confidence 6777777777777666767777889999999987554432 1122222222222 2211112 222334567788
Q ss_pred HHHHHhhC
Q 002400 478 SLVGMAVG 485 (927)
Q Consensus 478 ~~l~~~~~ 485 (927)
|.+++...
T Consensus 1197 G~l~Ryfd 1204 (1692)
T KOG1020|consen 1197 GLLSRYFD 1204 (1692)
T ss_pred HHHHHhcc
Confidence 88887543
No 74
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.89 E-value=8.7e-08 Score=96.43 Aligned_cols=203 Identities=18% Similarity=0.170 Sum_probs=131.5
Q ss_pred CCChhhHHHHHHHHHHHHHHh-----hhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHH
Q 002400 704 DKTAEERRIAICIFDDVMEHC-----REAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALS 778 (927)
Q Consensus 704 ~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~ 778 (927)
+.+|..|..|+..|..++... .+.+.+.+..++..+...+.|....+-.+|+.+++.++...+..+.||+..+++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 467999999999999999887 233344555666788888898888999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhH-HHHHHhcCCCCCcHHHHHHHHHHHHHHHhccC--Cc
Q 002400 779 RLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQV-VPAWLSCLPLKGDLIEAKVVHAQLCSMVERSD--GE 855 (927)
Q Consensus 779 ~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~-l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~--~~ 855 (927)
.|...+.++ +..+++.|..|+..++.+.+ ..+.+ ++.+...+..+ ...-+..+.+++..++...+ ..
T Consensus 98 ~Ll~~~~~~------~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 98 PLLKKLGDS------KKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHGGG---------HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHccc------cHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHh
Confidence 999998875 46688999999999988764 13455 44444455444 45678889999999998776 23
Q ss_pred ccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHH
Q 002400 856 ILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQ 922 (927)
Q Consensus 856 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 922 (927)
.+.. ...++.+.+.+...+. +.++++|....+++..+.+.+|.. -..+++.|++..|+.|.
T Consensus 168 ~l~~-~~~~~~l~~~l~~~l~----D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 168 VLQK-SAFLKQLVKALVKLLS----DADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYLE 228 (228)
T ss_dssp GG---HHHHHHHHHHHHHHHT----SS-HHHHHHHHHHHHHHHHHH-HH-H----------------
T ss_pred hhcc-cchHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccCC
Confidence 3331 0124678888888885 678999999999999999999976 68888999999988763
No 75
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.1e-08 Score=97.37 Aligned_cols=349 Identities=18% Similarity=0.209 Sum_probs=225.7
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhccCCCCC---ccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHH-HHhHH
Q 002400 108 LLVQLQNETNKSIIKKICDAVSELAASVLPDGD---WPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVL-IAHGD 183 (927)
Q Consensus 108 Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~---w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l-~~~~~ 183 (927)
++-.+.+. ++.|+...+.+++.+|......+- ...+=+.+.++. ++...++..+..|+..++..-.... ..+..
T Consensus 90 vl~llqs~-d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmm-td~vevqcnaVgCitnLaT~d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQSC-DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMM-TDGVEVQCNAVGCITNLATFDSNKVKIARSG 167 (550)
T ss_pred HHHHHhCc-chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhc-CCCcEEEeeehhhhhhhhccccchhhhhhcc
Confidence 34455554 999999999999998876544332 233333555544 4555677788888888776522211 11233
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH-HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc-
Q 002400 184 TLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF-LDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT- 261 (927)
Q Consensus 184 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~- 261 (927)
.+.|+. +.-++.+..+|..+..+|.++. ...++ .+..+ ..-+|. +.+++.++|.++.+.+...+..++-.
T Consensus 168 aL~plt-rLakskdirvqrnatgaLlnmT-hs~En--Rr~LV~aG~lpv----LVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 168 ALEPLT-RLAKSKDIRVQRNATGALLNMT-HSREN--RRVLVHAGGLPV----LVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred chhhhH-hhcccchhhHHHHHHHHHHHhh-hhhhh--hhhhhccCCchh----hhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 444443 3445568899999999999987 43321 11111 223454 44455678999999999888877633
Q ss_pred -CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHH
Q 002400 262 -EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVR 340 (927)
Q Consensus 262 -~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr 340 (927)
..+.+.+.-+.++|.+. .++.+++.+++.-|-.+|+.++........-.-..-+|.+++.++++....-
T Consensus 240 ~~Rk~Laqaep~lv~~Lv----------~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pli 309 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALV----------DLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLI 309 (550)
T ss_pred HHHHHHHhcccchHHHHH----------HHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHH
Confidence 23555555667788777 4455678999999999999998754321111111235788888899887777
Q ss_pred HHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCc-hHHHHHHHHHHhcC
Q 002400 341 WAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPY-LDGIVSKLLVLLQN 419 (927)
Q Consensus 341 ~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-l~~l~~~L~~~l~~ 419 (927)
-+...|+..++-+-..+. .-.-..++.+|+..|.-..+.+++-+|.+.|.+++...... ...+ -...++.+..++-+
T Consensus 310 lasVaCIrnisihplNe~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEV-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-VSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHHHHHHhhcccccCccc-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-hHHHhhcCchHHHHHHHhc
Confidence 788888877776533322 11223467777787776346679999999999998655422 1111 23456777888888
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhh
Q 002400 420 GKQMVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAV 484 (927)
Q Consensus 420 ~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~ 484 (927)
.+..+|+..-.|++.++.. +.+..++ ..++|.|.... +++...+|+.+.++++.+...+
T Consensus 388 ~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t----~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 388 GPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWT----GSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred CChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeeccc----CccchhhcccHHHHHHhhhhhh
Confidence 9999999988888887743 2333333 24566666553 3366779998988888877554
No 76
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=0.00016 Score=78.52 Aligned_cols=108 Identities=7% Similarity=0.044 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 002400 594 TACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYII 673 (927)
Q Consensus 594 ~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il 673 (927)
.++-+++.++...+.. +...-+.++++++|. +++||-.|..++-.++.. +-+..|+
T Consensus 318 lgLlam~KI~ktHp~~----Vqa~kdlIlrcL~Dk-D~SIRlrALdLl~gmVsk-------------------kNl~eIV 373 (877)
T KOG1059|consen 318 LGLLAMSKILKTHPKA----VQAHKDLILRCLDDK-DESIRLRALDLLYGMVSK-------------------KNLMEIV 373 (877)
T ss_pred HHHHHHHHHhhhCHHH----HHHhHHHHHHHhccC-CchhHHHHHHHHHHHhhh-------------------hhHHHHH
Confidence 3555566665544333 444555678888875 899999999998888643 2233344
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHHHHHHhh
Q 002400 674 PALVEALHKEPEIDICASMLDALNESIQG-KDKTAEERRIAICIFDDVMEHCR 725 (927)
Q Consensus 674 ~~ll~~l~~e~d~~v~~~~l~~l~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~ 725 (927)
..|+..+...+....+...+..+-.++.. +-.....=.+-+..+++++.-.|
T Consensus 374 k~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~ 426 (877)
T KOG1059|consen 374 KTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG 426 (877)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc
Confidence 45555554444455666666555554431 11222333455666777776544
No 77
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.85 E-value=4.7e-06 Score=85.45 Aligned_cols=246 Identities=17% Similarity=0.219 Sum_probs=140.5
Q ss_pred CCccchHHHH--------H-HHhcCCChHHHHHHHHHHHHhhhhhHHH-----------HHH-------hHHHHHHHHHh
Q 002400 139 GDWPELIPFI--------F-QCLVTFNDKIQESALLILSRMSQFVSEV-----------LIA-------HGDTLHEVFSK 191 (927)
Q Consensus 139 ~~w~~ll~~l--------~-~~l~s~~~~~r~~al~~l~~l~~~~~~~-----------l~~-------~~~~l~~~l~~ 191 (927)
|.|.-++|.- + -.++++++..|-.|+..+..+.+..... |.| .+..+...++-
T Consensus 34 gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~ 113 (728)
T KOG4535|consen 34 GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLL 113 (728)
T ss_pred ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 5777776652 1 2346788889999999998887543221 111 23344445555
Q ss_pred hhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH
Q 002400 192 FLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL 270 (927)
Q Consensus 192 ~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l 270 (927)
.+.-+ ++.+....++|+..++ .+-+- ...-..++-.+...+...+.+.|..++..++..+..++..... +
T Consensus 114 ~l~~e~~~~~~tq~~kcla~lv-~~~p~---~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~-----~ 184 (728)
T KOG4535|consen 114 ALVAESSSQTVTQIIKCLANLV-SNAPY---DRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAP-----L 184 (728)
T ss_pred HHHHhcCchhHHHHHHHHHHHH-hcCch---HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCC-----C
Confidence 55433 6778888999999999 54321 1111245666677777888888999999998888877765311 1
Q ss_pred HHHHHHHHHHh-hccCchhhhhCCcchhHHHHHHHHHHHHhhhchHH-------HH------------hhHHHHHHHHHh
Q 002400 271 VDVVGSMLQVA-EAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKV-------MI------------KNLDQVVSMVLN 330 (927)
Q Consensus 271 ~~ll~~ll~~~-~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~-------~~------------~~l~~l~~~l~~ 330 (927)
+++-. .++.. +....-.+.++.++|-.+-.+--++....++.+.. +. .....=+-....
T Consensus 185 pei~~-~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~ 263 (728)
T KOG4535|consen 185 PEVQL-LLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAG 263 (728)
T ss_pred HHHHH-HhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhc
Confidence 11111 11110 00000011122233333333223333333322210 00 000000111222
Q ss_pred ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 331 SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 331 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
+...|+ .+|-.++..+..++.+++- ..-++-++...+..++.+ ..+.++.++..++..+.....
T Consensus 264 ~~~~ps-~~rle~~qvl~~~a~~~~~--~~~~~~~l~RvI~~~~~~-~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 264 STYEPS-PMRLEALQVLTLLARYFSM--TQAYLMELGRVICKCMGE-ADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred CccCCc-hhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHccCCC-CChHHHHHHHHHHHHHHHHHh
Confidence 333333 4788899999999988753 246777888889999999 999999999999988876554
No 78
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=0.00075 Score=79.47 Aligned_cols=143 Identities=23% Similarity=0.375 Sum_probs=115.9
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 22 FETLISNLMS--SSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 22 l~~~L~~~~s--~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
+...+....+ ++++.|.+|.+.+.+++. .|+.+ .....++..+..+.+|++|-.+|-+.++.+ |..++.+
T Consensus 12 lldavv~~~~~~~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~------W~~~~~~ 83 (1041)
T KOG2020|consen 12 LLDAVVVTLNPEGSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR------WNSLPVE 83 (1041)
T ss_pred HHHhHHHHhCcccchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh------cccCCcc
Confidence 3333444444 588899999999999999 57755 455566666889999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHhhc--------chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 002400 100 TQANLKSVLLVQLQNE--------TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMS 171 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~--------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~ 171 (927)
.+..+|...+...... +...++.+++..+-.|++.++| +.||+++|.+.+... .++..++.++.++..|.
T Consensus 84 ~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lLs 161 (1041)
T KOG2020|consen 84 ERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSK-TSETVCELSMIILLLLS 161 (1041)
T ss_pred ccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhh-cCcccchHHHHHHHHHH
Confidence 9999999999876532 2456889999999999999999 899999999998775 44566777787777777
Q ss_pred hhh
Q 002400 172 QFV 174 (927)
Q Consensus 172 ~~~ 174 (927)
+.+
T Consensus 162 Edv 164 (1041)
T KOG2020|consen 162 EEV 164 (1041)
T ss_pred HHH
Confidence 664
No 79
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.78 E-value=2.7e-08 Score=80.08 Aligned_cols=67 Identities=34% Similarity=0.526 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcccccccc--------ccCHhHHHHHHHHHHH
Q 002400 40 AEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFT--------RLAPSTQANLKSVLLV 110 (927)
Q Consensus 40 Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~--------~l~~~~~~~ik~~Ll~ 110 (927)
||++|+++++++|+ |...|++++.+ +.++.+|++|+++|||.|.++ |. .++++.|..||+.+++
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~------W~~~~~~~~~~~~~~~k~~Ik~~ll~ 73 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN------WSPSKQKGWSQLPEEEKEQIKSQLLQ 73 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS------GGHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc------CchhhccCCCCCCHHHHHHHHHHHHH
Confidence 79999999994476 77999999966 669999999999999999999 99 9999999999999999
Q ss_pred HHh
Q 002400 111 QLQ 113 (927)
Q Consensus 111 ~l~ 113 (927)
.|.
T Consensus 74 ~l~ 76 (77)
T PF03810_consen 74 LLL 76 (77)
T ss_dssp HHH
T ss_pred HHc
Confidence 886
No 80
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.77 E-value=1.7e-06 Score=98.76 Aligned_cols=200 Identities=13% Similarity=0.214 Sum_probs=164.5
Q ss_pred CchhhhhCCcchhHHHHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH
Q 002400 285 AVFPGFLAAPEWQKHHAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH 363 (927)
Q Consensus 285 ~~i~~~l~~~~~~~r~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 363 (927)
+.++..+.+++|+.|..|+..+..+.+... +....+...+...+-..+.|.|..|-..|+.++..++..++..+ ..|.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHH
Confidence 455666778999999999999998888766 33334455555556667899999999999999999999998876 7899
Q ss_pred hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh--
Q 002400 364 HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG-- 441 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~-- 441 (927)
..++|.++..+.+ ..+.++..+..++..++... .+..+.+.+..++.+.++..+..+...+.......++
T Consensus 335 ~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 335 KNVFPSLLDRLKE-KKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 9999999999999 89999999999999998743 3667778888889999999999999999998888774
Q ss_pred hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHH
Q 002400 442 QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 497 (927)
Q Consensus 442 ~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~ 497 (927)
.+.+-...++|.+.....+ .+..+|..|.++++.+.+..|.+.+..++..+-
T Consensus 407 ~~~~t~~~l~p~~~~~~~D----~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHIND----TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred cchhhHHHHhHHHhhhccC----CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 2456678888888887644 467799999999999999999777776666554
No 81
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.75 E-value=4.6e-05 Score=83.63 Aligned_cols=385 Identities=16% Similarity=0.202 Sum_probs=227.6
Q ss_pred HHHHHHHhcCCCh---HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCc-
Q 002400 145 IPFIFQCLVTFND---KIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSL- 219 (927)
Q Consensus 145 l~~l~~~l~s~~~---~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~- 219 (927)
+|.++..+.+.+. ...+..+.+|..++.... .+......++..+....... +.+....++.++..++...-...
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3566666655443 556777888888775432 23333445666665555433 66777788888888873222222
Q ss_pred -hhHHhHHh--hHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHHHHhhccCchhhhhC
Q 002400 220 -GEKERFLD--LLPLMMRTLTEALNKGN---ESSAQEALELLIELAATEP-RFLRKQLVDVVGSMLQVAEAEAVFPGFLA 292 (927)
Q Consensus 220 -~~~~~~~~--~~p~ll~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~-~~~~~~l~~ll~~ll~~~~~~~~i~~~l~ 292 (927)
.....+.. ++|.+++...+...... +.....+...+..++..-+ .--...+..+....+ ..+ -....-.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~---~~~-~~~~~~~ 155 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFL---SPK-SFSPFQP 155 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc---ccc-ccCCCCc
Confidence 12233333 78888877766543322 2333333333333333321 111222333333222 000 0000000
Q ss_pred Ccc---hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 293 APE---WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 293 ~~~---~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+.. |..+......-+.++.-.++...+...+++..+... .+..++..|.+++.+++.+...+..+ ..+..++.
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~---~~l~~~l~ 232 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD---DDLDEFLD 232 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh---hhHHHHHH
Confidence 111 233333333333343333332224555677766665 34456899999999999999875432 34556666
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh-------
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG------- 441 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~------- 441 (927)
.+...+.....+..+..+...+.-+.+..--. -.|....+++.|+.++.+ +.+...+..+++.+..-.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R-~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~ 309 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMR-GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENH 309 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcccc
Confidence 66655522134555555555554444432100 125567778888888877 55667777888877755222
Q ss_pred -hh-----HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcch
Q 002400 442 -QF-----QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTT 515 (927)
Q Consensus 442 -~~-----~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 515 (927)
.. ..++..++|.|.+......+. .|...+.+++.+...++++.+.++++.+++.+++-.+. .+..++
T Consensus 310 a~vklLykQR~F~~~~p~L~~~~~~~~~~----~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~ 382 (415)
T PF12460_consen 310 ANVKLLYKQRFFTQVLPKLLEGFKEADDE----IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVL 382 (415)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHhhcChh----hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHH
Confidence 11 257788899998887764432 67777899999999999999999999999999874332 233488
Q ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHH
Q 002400 516 SYMLQAWARLCKCLGQEFIPYMSVVMPPLLQS 547 (927)
Q Consensus 516 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~ 547 (927)
...+.++..+...-++-+.+|+..++|.+++.
T Consensus 383 ~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 383 LSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 88999999998888888999999999999864
No 82
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00082 Score=72.94 Aligned_cols=494 Identities=16% Similarity=0.212 Sum_probs=266.7
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+++++..+..+..+...++.+.+...+ .+..++..+.+.|...++.-..-|+.|++.+.. .++...+..++-.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~srn~~fv~LAL~~I~niG~---re~~ea~~~DI~K 153 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSRNPTFVCLALHCIANIGS---REMAEAFADDIPK 153 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc---HhHHHHhhhhhHH
Confidence 466778888999999999998887654 445566777888888899999999999998875 2332334444433
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYD 448 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 448 (927)
.|+.. + ....||..|+-||-.+.+..+ +.+.+ +.-.++++.+|++.+-.|-.++...|..++...++.+.
T Consensus 154 lLvS~--~-~~~~vkqkaALclL~L~r~sp-Dl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk---- 223 (938)
T KOG1077|consen 154 LLVSG--S-SMDYVKQKAALCLLRLFRKSP-DLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK---- 223 (938)
T ss_pred HHhCC--c-chHHHHHHHHHHHHHHHhcCc-cccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh----
Confidence 33221 1 357899999999999988865 44433 34556777888888877777777777777765554322
Q ss_pred HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhh------HHHHHHHHHHHh-ccCCCCCCcchHHHHHH
Q 002400 449 AVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDD------AKQVMEVLMSLQ-GSQMEADDPTTSYMLQA 521 (927)
Q Consensus 449 ~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~------~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~ 521 (927)
..+|. |+.-+..++...|.+ ...| ++++.-.++++. .....+|...+....++
T Consensus 224 ~~~~~-------------------avs~L~riv~~~~t~-~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~ev 283 (938)
T KOG1077|consen 224 TCLPL-------------------AVSRLSRIVVVVGTS-LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEV 283 (938)
T ss_pred hhHHH-------------------HHHHHHHHHhhcccc-hhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 22211 122233333344422 1111 233333333321 11222333455555555
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHH
Q 002400 522 WARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCC 601 (927)
Q Consensus 522 ~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~ 601 (927)
+.++.. ..+..+.. .++. ....+..++ ++ ...
T Consensus 284 l~~iLn-------------------k~~~~~~~---------------k~vq-------~~na~naVL------Fe-aI~ 315 (938)
T KOG1077|consen 284 LERILN-------------------KAQEPPKS---------------KKVQ-------HSNAKNAVL------FE-AIS 315 (938)
T ss_pred HHHHHh-------------------ccccCccc---------------cchH-------hhhhHHHHH------HH-HHH
Confidence 444433 33211110 0000 000111111 01 111
Q ss_pred HHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 002400 602 YADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALH 681 (927)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~ 681 (927)
++.++... ...+......+.+++++ ...++|--|.+.++.++.+- +..+.+..-...++..++
T Consensus 316 l~~h~D~e-~~ll~~~~~~Lg~fls~-rE~NiRYLaLEsm~~L~ss~---------------~s~davK~h~d~Ii~sLk 378 (938)
T KOG1077|consen 316 LAIHLDSE-PELLSRAVNQLGQFLSH-RETNIRYLALESMCKLASSE---------------FSIDAVKKHQDTIINSLK 378 (938)
T ss_pred HHHHcCCc-HHHHHHHHHHHHHHhhc-ccccchhhhHHHHHHHHhcc---------------chHHHHHHHHHHHHHHhc
Confidence 22222221 12244555566666666 47899999999999997652 123333333556677888
Q ss_pred cCChHHHHHHHHHHHHHhhc--------------CCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccC-C
Q 002400 682 KEPEIDICASMLDALNESIQ--------------GKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACND-K 746 (927)
Q Consensus 682 ~e~d~~v~~~~l~~l~~~~~--------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d-~ 746 (927)
.|.|..++..+++-+..+++ ....+...|.-.+.-++-+++....++.=|+.-++. |++.-+| .
T Consensus 379 terDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLq-Liriagd~v 457 (938)
T KOG1077|consen 379 TERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQ-LIRIAGDYV 457 (938)
T ss_pred cccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHhcccc
Confidence 89999999999988877765 223344444444444444444444443333333333 2222222 1
Q ss_pred ChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC------CHhh
Q 002400 747 HPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI------DAAQ 820 (927)
Q Consensus 747 ~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~------~~~~ 820 (927)
+.+|-. -+-.++ ...+++++|.. ..+...++.+ +..+|.+.+=|-++..++..+ ....
T Consensus 458 sdeVW~----RvvQiV-vNnedlq~yaa---k~~fe~Lq~~--------a~hE~mVKvggyiLGEfg~LIa~~prss~~~ 521 (938)
T KOG1077|consen 458 SDEVWY----RVVQIV-VNNEDLQGYAA---KRLFEYLQKP--------ACHENMVKVGGYILGEFGNLIADDPRSSPAV 521 (938)
T ss_pred cHHHHH----HhheeE-ecchhhhHHHH---HHHHHHHhhh--------HHHHHHHHhhhhhhhhhhhhhcCCCCCChHH
Confidence 222211 111111 12345666642 3333444332 234444444333333332222 2345
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhh
Q 002400 821 VVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQS 900 (927)
Q Consensus 821 ~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 900 (927)
.+..+-+.++..+. ..+.-.+.+...++... |.+ -+.+.++|..... ..+.|+.++.++-+.-.+-.
T Consensus 522 qFsllh~K~~~~s~-~tr~lLLtTyiKl~nl~-PEi-------~~~v~~vFq~~~n----~~D~ElQqRa~EYLql~k~a 588 (938)
T KOG1077|consen 522 QFSLLHEKLHLCSP-VTRALLLTTYIKLINLF-PEI-------KSNVQKVFQLYSN----LIDVELQQRAVEYLQLSKLA 588 (938)
T ss_pred HHHHHHHHhccCCh-hHHHHHHHHHHHHHhhC-hhh-------hHHHHHHHHhhcc----cCCHHHHHHHHHHHHHHHhc
Confidence 67777788877554 34566778888888554 433 2355555555443 45789999999998865532
Q ss_pred CChhhHHHHHhcCCH
Q 002400 901 LPPSTLASTWSSLQP 915 (927)
Q Consensus 901 ~~~~~~~~~~~~l~~ 915 (927)
..+.++.++..+||
T Consensus 589 -s~dvL~~vleeMPp 602 (938)
T KOG1077|consen 589 -STDVLQTVLEEMPP 602 (938)
T ss_pred -cchHHHHHHhhCCC
Confidence 23447888887764
No 83
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.70 E-value=1.8e-07 Score=77.26 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCC
Q 002400 709 ERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPN 788 (927)
Q Consensus 709 ~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~ 788 (927)
.|..++-+|+.++..+|..+.+|++.++|+++.++.|+++.||..||.++..+++..+..+.+|+.+++..|..++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCchhhhHHHHHHHHHHHHH
Q 002400 789 ALHSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 789 ~~~~~~~~~~~na~~al~~l~ 809 (927)
..|+ +++.-+-|++
T Consensus 82 ------~~Vr-~~a~~Ld~ll 95 (97)
T PF12755_consen 82 ------ENVR-SAAELLDRLL 95 (97)
T ss_pred ------hhHH-HHHHHHHHHh
Confidence 3365 4555555554
No 84
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00026 Score=77.80 Aligned_cols=490 Identities=18% Similarity=0.173 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhccCC-----CCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC
Q 002400 122 KKICDAVSELAASVLP-----DGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN 196 (927)
Q Consensus 122 ~~~~~~i~~ia~~~~~-----~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~ 196 (927)
+..+.++++|...... ..+-.+++-.+..+.++.+...|.....++..+.....+.+ .+...+.+-++..
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi-----ivtsslmkD~t~~ 112 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI-----IVTSSLMKDMTGK 112 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh-----hhhHHHHhhccCC
Confidence 3455566665543322 23445677788888999999999999999888876554432 2334444444444
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 002400 197 NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGS 276 (927)
Q Consensus 197 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ 276 (927)
+...|..|+++|..++ +.+ .+..+=..+.+.+-+....+...++-.=..+........+.-...+.
T Consensus 113 ~d~yr~~AiR~L~~I~-----d~~-------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiq-- 178 (865)
T KOG1078|consen 113 EDLYRAAAIRALCSII-----DGT-------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQ-- 178 (865)
T ss_pred CcchhHHHHHHHHhhc-----Ccc-------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhh--
Confidence 7789999999999988 222 22222223333332333322222221111112121112222111111
Q ss_pred HHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHhHhhhc
Q 002400 277 MLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLN-SFQDPHPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 277 ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~ 355 (927)
+...+.+--+.+-|+..|.++-....- .+..++..+.. .+.++.. .|.+-++...+-
T Consensus 179 ------------ea~~s~~~m~QyHalglLyqirk~drl----a~sklv~~~~~~~~~~~~A------~~~lir~~~~~l 236 (865)
T KOG1078|consen 179 ------------EAVNSDNIMVQYHALGLLYQIRKNDRL----AVSKLVQKFTRGSLKSPLA------VCMLIRIASELL 236 (865)
T ss_pred ------------hccCcHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHccccccchhH------HHHHHHHHHHHh
Confidence 222222332333334444333322111 12223332222 2333321 112222222221
Q ss_pred hhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002400 356 PELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 435 (927)
Q Consensus 356 ~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l 435 (927)
.+. ......+++.+-.++.+ +...|.-.|+.++..+-...+ ..+.| .+..|..+++++...+|-.|+..|..+
T Consensus 237 ~~~-~~~~s~~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~-r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkv 309 (865)
T KOG1078|consen 237 KEN-QQADSPLFPFLESCLRH-KSEMVIYEAARAIVSLPNTNS-RELAP----AVSVLQLFLSSPKVALRFAAVRTLNKV 309 (865)
T ss_pred hhc-ccchhhHHHHHHHHHhc-hhHHHHHHHHHHHhhccccCH-hhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 122 34455677888888887 778888888888877755444 33444 667777788888899999999999999
Q ss_pred HHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcch
Q 002400 436 ADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTT 515 (927)
Q Consensus 436 ~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 515 (927)
+...+....- .-.-|..++.+ .++.+ |.-++..+-.............++-..+-. .++..+
T Consensus 310 Am~~P~~v~~----cN~elE~lItd----~NrsI---at~AITtLLKTG~e~sv~rLm~qI~~fv~d-------isDeFK 371 (865)
T KOG1078|consen 310 AMKHPQAVTV----CNLDLESLITD----SNRSI---ATLAITTLLKTGTESSVDRLMKQISSFVSD-------ISDEFK 371 (865)
T ss_pred HHhCCccccc----cchhHHhhhcc----cccch---hHHHHHHHHHhcchhHHHHHHHHHHHHHHh-------ccccce
Confidence 9777653221 11222333322 22222 223344444333323233333333333222 123445
Q ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHH
Q 002400 516 SYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATA 595 (927)
Q Consensus 516 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a 595 (927)
.-+..++..+|..++..- ...++.+.+.+..+. ..+.|...
T Consensus 372 ivvvdai~sLc~~fp~k~----~~~m~FL~~~Lr~eG-----------------------------------g~e~K~ai 412 (865)
T KOG1078|consen 372 IVVVDAIRSLCLKFPRKH----TVMMNFLSNMLREEG-----------------------------------GFEFKRAI 412 (865)
T ss_pred EEeHHHHHHHHhhccHHH----HHHHHHHHHHHHhcc-----------------------------------CchHHHHH
Confidence 556666667776544332 223344444443211 11224445
Q ss_pred HHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 002400 596 CNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPA 675 (927)
Q Consensus 596 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 675 (927)
.+++..++...+..=.+ .+..+...+.++. -+.-+...++-+.+- |......+.+.+..++.++
T Consensus 413 vd~Ii~iie~~pdsKe~----~L~~LCefIEDce---~~~i~~rILhlLG~E-------gP~a~~Pskyir~iyNRvi-- 476 (865)
T KOG1078|consen 413 VDAIIDIIEENPDSKER----GLEHLCEFIEDCE---FTQIAVRILHLLGKE-------GPKAPNPSKYIRFIYNRVI-- 476 (865)
T ss_pred HHHHHHHHHhCcchhhH----HHHHHHHHHHhcc---chHHHHHHHHHHhcc-------CCCCCCcchhhHHHhhhhh--
Confidence 55555555433322111 1122222222221 122222333322211 1111222334444444332
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHh
Q 002400 676 LVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAV 755 (927)
Q Consensus 676 ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~ 755 (927)
| ++..+|..|+.++..+.... ....+.+...+.+++.|.|..+|..|.
T Consensus 477 ----L------------------------En~ivRaaAv~alaKfg~~~----~~l~~sI~vllkRc~~D~DdevRdrAt 524 (865)
T KOG1078|consen 477 ----L------------------------ENAIVRAAAVSALAKFGAQD----VVLLPSILVLLKRCLNDSDDEVRDRAT 524 (865)
T ss_pred ----h------------------------hhhhhHHHHHHHHHHHhcCC----CCccccHHHHHHHHhcCchHHHHHHHH
Confidence 1 34778999999998887222 124456777778889999999999999
Q ss_pred HHHHHHHhh
Q 002400 756 YGIGVCAEF 764 (927)
Q Consensus 756 ~~lg~l~~~ 764 (927)
+.+..+-..
T Consensus 525 f~l~~l~~~ 533 (865)
T KOG1078|consen 525 FYLKNLEEK 533 (865)
T ss_pred HHHHHhhhh
Confidence 998877633
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.9e-06 Score=89.75 Aligned_cols=423 Identities=16% Similarity=0.162 Sum_probs=221.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 22 FETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 22 l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
+-.++.++...|-+..+-...++..+.+.+|+.-+.+.-.++.+ +.++.+|.+|...+-..= -+.
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-------------v~~ 117 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-------------VDK 117 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-------------ehH
Confidence 44556666677788888888888888888888655555555555 678888888865442211 123
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH-H
Q 002400 100 TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV-L 178 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~-l 178 (927)
..+.+...+...+.++ ++.+|+.++.+++++.........-..+++.|..++.+.++.+...|+.+|..+.+.-++. .
T Consensus 118 i~ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 4456777888888876 9999999999999887655433344678889999898999999999999999998876531 1
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHH--------------hhCCCch------hHHhHHhhHHHHHH---H
Q 002400 179 IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIM--------------NCLPSLG------EKERFLDLLPLMMR---T 235 (927)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~--------------~~~~~~~------~~~~~~~~~p~ll~---~ 235 (927)
......++..++..++.-++--+...+.++....- ..+.... ..+.+..+++.+-+ .
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence 11122333444444433332333333333332220 1111000 00111111111111 1
Q ss_pred HHHHHh-------cCChhHHHHHHHHHHHHHccCcHHHHHHHH------------HH--HHHHHHHhhcc---Cc---hh
Q 002400 236 LTEALN-------KGNESSAQEALELLIELAATEPRFLRKQLV------------DV--VGSMLQVAEAE---AV---FP 288 (927)
Q Consensus 236 l~~~l~-------~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~------------~l--l~~ll~~~~~~---~~---i~ 288 (927)
+..-+. +..++....++.=+.-+....|++++..+. +. +..+...+.+. +. +.
T Consensus 277 ~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~ 356 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELK 356 (734)
T ss_pred HHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 111010 112222222222111122222222211110 00 00111111100 11 11
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
++-.+-+...-+.++.++|.++-...+. ...++.++..+.-....|-..++..+..+...++ ...+.+++
T Consensus 357 eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-----~~~~~vv~ 426 (734)
T KOG1061|consen 357 EYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-----NKYESVVA 426 (734)
T ss_pred HhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC-----Cchhhhhh
Confidence 2223344555566788888777655442 4455555555543333333334444444443332 22355677
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYD 448 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 448 (927)
.+...+..-++|..|.+..|.++...+..+ -.+.+++.+++.+.+....|+-..+.+.-.+--..+..- +
T Consensus 427 ~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t----q 496 (734)
T KOG1061|consen 427 ILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTET----Q 496 (734)
T ss_pred hhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH----H
Confidence 777777665678889899999998887764 245566777777777777777666655544433322221 2
Q ss_pred HHHHHHHHHHhcccCcchhhHHHHHHHHHHHH
Q 002400 449 AVMPYLKAILVNANDKSNRMLRAKSMECISLV 480 (927)
Q Consensus 449 ~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l 480 (927)
..+..+...-. .+.++..+|.+++.--..+
T Consensus 497 ~~l~~vL~~~~--~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 497 ELLQGVLPLAT--ADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred HHHHHHHhhhh--ccccChhhhhhHHHHHHHh
Confidence 22222222211 2234567887776544433
No 86
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=0.0014 Score=71.86 Aligned_cols=455 Identities=12% Similarity=0.068 Sum_probs=223.6
Q ss_pred CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhc-CCCccccCchHHHHH--
Q 002400 335 PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN-CTPDILTPYLDGIVS-- 411 (927)
Q Consensus 335 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~-~~~~~~~~~l~~l~~-- 411 (927)
.+|.+-..++.|+|++..|+.-.. -.-+..++.+.+.+.- ..+|.+||.|+..++.. +++-.--+.+..+-.
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInL--IaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l 279 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINL--IANDYFLNLLYKFLNI---EELRIAACNCILAIVSKKMKPMDKLALLNMLNQTL 279 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhh--hhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 388999999999999999986443 2234567777777775 78999999998888744 332111122322211
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhh
Q 002400 412 KLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRD 491 (927)
Q Consensus 412 ~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~ 491 (927)
.++-. .+.+...-....+-++.+....|-++......+. ...+..++ .+|+..
T Consensus 280 ~lfg~-~s~dq~~d~df~e~vskLitg~gvel~~i~s~ln-----------seld~~~k---qn~l~~------------ 332 (980)
T KOG2021|consen 280 ELFGY-HSADQMDDLDFWESVSKLITGFGVELTIIISQLN-----------SELDTLYK---QNVLSI------------ 332 (980)
T ss_pred HHHhh-hccccccCchHHHHHHHHHhhcceeeehhHhhhh-----------hccCHHHH---HHHHHH------------
Confidence 11111 1111111111222333333333322211111110 00111121 122221
Q ss_pred hHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhc------cccccchhhhHHHHHHHcccCCCccccCCCCCCCC
Q 002400 492 DAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLG------QEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDI 565 (927)
Q Consensus 492 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~ 565 (927)
+..++.++++.... .++.....++.++.+....++ +.-..++..++..+++.+.+++.....++ ..+
T Consensus 333 -ll~~vpyllq~l~~---e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn---~tg 405 (980)
T KOG2021|consen 333 -LLEIVPYLLQFLNN---EFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDN---VTG 405 (980)
T ss_pred -HHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccC---CCC
Confidence 12234444443332 223344555555555544432 33445678888888888887754322111 111
Q ss_pred CCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHH
Q 002400 566 DDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 645 (927)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~ 645 (927)
+|+++..+.+ |..---.+..+...-++-+...+.+.+...+..... .+|..-..|+..+-.+.
T Consensus 406 ~EeEa~f~e~----------------RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e-~swqevE~Aiylly~lg 468 (980)
T KOG2021|consen 406 DEEEAFFEEV----------------RKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKE-ESWQEVELAIYLLYNLG 468 (980)
T ss_pred chHHHHHHHH----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHh
Confidence 1112211111 000111122222222333444455555544443333 36667777777776665
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH-HccCChHHHHHHHHH---------------------HHHHhhcCC
Q 002400 646 RSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEA-LHKEPEIDICASMLD---------------------ALNESIQGK 703 (927)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~-l~~e~d~~v~~~~l~---------------------~l~~~~~~~ 703 (927)
.+.+...- |-..|... -.......++.++.. +..-+.+.|..-+++ ++-.-....
T Consensus 469 E~l~~~~~-~~nsgd~s--~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglh 545 (980)
T KOG2021|consen 469 ECLKNNYF-GLNSGDIS--TSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLH 545 (980)
T ss_pred hccccccc-cccCcccc--HHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhcc
Confidence 55421100 00001110 011222222222221 111122222222222 222222266
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCC--------------------------------hhH-
Q 002400 704 DKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKH--------------------------------PDV- 750 (927)
Q Consensus 704 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~--------------------------------~~v- 750 (927)
+.+..+|.-|-+.+.++++.......||.++++..+-..++.+. |.-
T Consensus 546 n~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~ 625 (980)
T KOG2021|consen 546 NKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAEL 625 (980)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHH
Confidence 77888999999999999999888888888877766655542100 000
Q ss_pred -------------------------------------HhhHhHHHHHHHhhcCC--------CcHHHHHHHHHHHHHhhc
Q 002400 751 -------------------------------------RQAAVYGIGVCAEFGGS--------VFKPLVGEALSRLDFVIR 785 (927)
Q Consensus 751 -------------------------------------r~~a~~~lg~l~~~~~~--------~~~~~~~~il~~L~~~l~ 785 (927)
..+++-++|.+++.... -....+..+++.+...+.
T Consensus 626 qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls 705 (980)
T KOG2021|consen 626 QAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLS 705 (980)
T ss_pred HHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHh
Confidence 11233455555554221 112345566666666665
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhhcCCCC-C-HhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcc
Q 002400 786 HPNALHSDNVMAYDNAVSALGKICQFHRDSI-D-AAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEI 856 (927)
Q Consensus 786 ~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~ 856 (927)
.... ....|..+-..++||+..-+..+ | +++.+..+|+. .|..|-...+.++.+|+.+.+..+
T Consensus 706 ~f~k----~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s----~d~kEmvdfl~flsQLihkfk~~~ 770 (980)
T KOG2021|consen 706 FFNK----FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSS----TDLKEMVDFLGFLSQLIHKFKTDC 770 (980)
T ss_pred hccc----cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 34578888899999998876665 3 66666666665 345566777788888887776554
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.4e-05 Score=86.10 Aligned_cols=200 Identities=19% Similarity=0.197 Sum_probs=125.3
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHH
Q 002400 186 HEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRF 265 (927)
Q Consensus 186 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 265 (927)
++-+...+.+....-|..|++-+..-+ .. + ..+..+.|.+++... ..|-+..+.+-..+...+...|..
T Consensus 15 i~elks~l~s~~~~kr~~a~kkvIa~M-t~---G---~DvSslF~dvvk~~~----T~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKVIAYM-TV---G---KDVSSLFPDVVKCMQ----TRDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHHHhcC-cc---C---cchHhhhHHHHhhcc----cCCchHHHHHHHHHHHhhccCchH
Confidence 344444445444466666665444433 11 1 335566666655443 345455555666666666665544
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHH
Q 002400 266 LRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAIN 345 (927)
Q Consensus 266 ~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~ 345 (927)
-.-.++.++ .-..+++|..|.-|+..++.+-- ......++..+.++++|.++.||.++..
T Consensus 84 a~~avnt~~--------------kD~~d~np~iR~lAlrtm~~l~v------~~i~ey~~~Pl~~~l~d~~~yvRktaa~ 143 (734)
T KOG1061|consen 84 AILAVNTFL--------------KDCEDPNPLIRALALRTMGCLRV------DKITEYLCDPLLKCLKDDDPYVRKTAAV 143 (734)
T ss_pred HHhhhhhhh--------------ccCCCCCHHHHHHHhhceeeEee------hHHHHHHHHHHHHhccCCChhHHHHHHH
Confidence 332222222 33357899999998888876532 2445667888999999999999999999
Q ss_pred HHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC
Q 002400 346 AIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG 420 (927)
Q Consensus 346 ~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~ 420 (927)
++..+... .++. -.-..+++.|-..+.| ++|.|...|..+|..+.+..+..........++..++..++.-
T Consensus 144 ~vakl~~~-~~~~--~~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 144 CVAKLFDI-DPDL--VEDSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred HHHHhhcC-Chhh--ccccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 99987653 2322 3445677788888888 8999999999999999887653222233345555555554443
No 88
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.61 E-value=0.0026 Score=72.04 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=132.6
Q ss_pred HHHHHhh-hCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 186 HEVFSKF-LGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 186 ~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
+..+..+ +.+.+...|..|++-+..-+ .+ + +.+..++|.+++.+. +.|.+..+..-..|...++..|.
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M-~~---G---~dmssLf~dViK~~~----trd~ElKrL~ylYl~~yak~~P~ 88 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQM-SL---G---EDMSSLFPDVIKNVA----TRDVELKRLLYLYLERYAKLKPE 88 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHH-hc---C---CChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhccCHH
Confidence 3444445 77778889999998776655 21 1 225666666555443 56788888888888888888774
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHH
Q 002400 265 FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAI 344 (927)
Q Consensus 265 ~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 344 (927)
...-.++. ++.-++|+|...|..|+..++.+-.. ..++.+++.+.+.+.|+++.||..|+
T Consensus 89 ~~lLavNt--------------i~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aa 148 (757)
T COG5096 89 LALLAVNT--------------IQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAA 148 (757)
T ss_pred HHHHHHHH--------------HHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 43333322 23456789999999999999987553 66788999999999999999999999
Q ss_pred HHHHHhHhhhchhHHHHhHhh-HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHH
Q 002400 345 NAIGQLSTDLGPELQTQFHHR-LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLL 414 (927)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~-il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 414 (927)
.|+..+... +++ -+.+. ....+...+.| .+|.|...|..+|..+... ...+|...+...+-
T Consensus 149 lav~kly~l-d~~---l~~~~g~~~~l~~l~~D-~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~ 210 (757)
T COG5096 149 LAVAKLYRL-DKD---LYHELGLIDILKELVAD-SDPIVIANALASLAEIDPE----LAHGYSLEVILRIP 210 (757)
T ss_pred HHHHHHHhc-CHh---hhhcccHHHHHHHHhhC-CCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhh
Confidence 999998753 222 23333 44455556667 8999999999998888655 23456555544443
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.60 E-value=5.2e-06 Score=94.61 Aligned_cols=276 Identities=12% Similarity=0.177 Sum_probs=177.6
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH----HHHHhHHHH
Q 002400 110 VQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE----VLIAHGDTL 185 (927)
Q Consensus 110 ~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~----~l~~~~~~l 185 (927)
..+..-....-+..+-..+..++.+.-.+.....++|+++.++.++...+|-.|+.+|..+...+.+ .-.-+.+-+
T Consensus 429 s~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYl 508 (1431)
T KOG1240|consen 429 SCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYL 508 (1431)
T ss_pred HHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhh
Confidence 3333333445667777888888887666567889999999999999999999999999988765432 111145678
Q ss_pred HHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCCh---------h----HHHHH
Q 002400 186 HEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNE---------S----SAQEA 251 (927)
Q Consensus 186 ~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~---------~----~~~~a 251 (927)
+|.+...+.|+ ...||.+-..++..++ ... ..|..+--.+-+. .+.++.+. . .....
T Consensus 509 fP~L~~l~~d~~~~~vRiayAsnla~LA-~tA------~rFle~~q~~~~~--g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 509 FPHLNHLLNDSSAQIVRIAYASNLAQLA-KTA------YRFLELTQELRQA--GMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred hhhhHhhhccCccceehhhHHhhHHHHH-HHH------HHHHHHHHHHHhc--ccccCcccccccccccchHHHHHHHHH
Confidence 89999988884 5678888888888877 211 1111111000000 00000000 0 00111
Q ss_pred HHHHHHHHccCcHHHHHH-HHHHHHHHHHHh---hcc---CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHH
Q 002400 252 LELLIELAATEPRFLRKQ-LVDVVGSMLQVA---EAE---AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQV 324 (927)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~-l~~ll~~ll~~~---~~~---~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l 324 (927)
-+...+++..++.+++.. ++.+.+.|.-.- .|+ .++..+++|.+|+.|.|-...+..++-..+.. ..-+-+
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyl 657 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYL 657 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHH
Confidence 122334444444444443 334444333111 122 45568889999999999888887666544431 012347
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 325 VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 325 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
+|.+.++|.|+.+.|-..|+.++..+++.- -+.+.+.-+++..+...|-. ++.-+|..++..+....+..+.
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999998742 23345667777777778888 9999999999999988877653
No 90
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.52 E-value=1.7e-07 Score=69.31 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
|++|.+|+.+||.+++.+++.+.++.+.+++.+...|+|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999864
No 91
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.52 E-value=0.0042 Score=69.99 Aligned_cols=215 Identities=15% Similarity=0.162 Sum_probs=162.1
Q ss_pred HHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002400 589 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQL 668 (927)
Q Consensus 589 ~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 668 (927)
.+....|++.+.++.+++--.-+|-...+...++.++.+ +++-..|++++.-++.-+.......++.....-|-+++
T Consensus 788 ~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf 864 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF 864 (1030)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH
Confidence 345667888888888776555566666777777777764 57777788887776654332221112222234677889
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhh-hhhHHhHHHHHHHHccCCC
Q 002400 669 TDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAA-LKYYDTYLPFLLEACNDKH 747 (927)
Q Consensus 669 ~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~~~ll~~l~~~l~d~~ 747 (927)
+..+.|.+++.+...+ ...|..-+.+|..++.+.|... .|.++.++|.++++++-+|
T Consensus 865 F~~ivP~l~~~~~t~~----------------------~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D 922 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAP----------------------GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD 922 (1030)
T ss_pred HHhhHHHHHHHhccCC----------------------ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc
Confidence 9999999999987543 5677777888888888887654 4799999999999999999
Q ss_pred hhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC---CHhhHHHH
Q 002400 748 PDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI---DAAQVVPA 824 (927)
Q Consensus 748 ~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~---~~~~~l~~ 824 (927)
..+|-.+..++..+....+.....|+..+++.+..+=.+++. ....||..|..|++-+.+..|... .-++++..
T Consensus 923 ~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n---~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~a 999 (1030)
T KOG1967|consen 923 VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDN---NMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRA 999 (1030)
T ss_pred cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCc---chhHHHHHHHHHHHHHhccCCCcccccccHHHHHH
Confidence 999999999999999988888999999999999977555431 127899999999999999766653 46778888
Q ss_pred HHhcCCC
Q 002400 825 WLSCLPL 831 (927)
Q Consensus 825 ~l~~Lp~ 831 (927)
+...|..
T Consensus 1000 l~k~LdD 1006 (1030)
T KOG1967|consen 1000 LIKILDD 1006 (1030)
T ss_pred hhhccCc
Confidence 8777743
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.51 E-value=0.0052 Score=70.29 Aligned_cols=370 Identities=16% Similarity=0.221 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC
Q 002400 299 HHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ 378 (927)
Q Consensus 299 r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 378 (927)
-+.++..|..+++......+-.-..+++.+++.|...+..+.-.+..+|..++-.-.. -..-.-..+++.|.+.+.. +
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN-K~~m~~~giV~kL~kLl~s-~ 343 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN-KDEMAESGIVEKLLKLLPS-E 343 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHcCCHHHHHHHhcC-C
Confidence 3467788999998776544444456788888889888999999999999998854321 1122455799999999998 8
Q ss_pred CchHHHHHHHHHHHhHhcCCCccccCchH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q 002400 379 NPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKA 456 (927)
Q Consensus 379 ~~~v~~~a~~al~~l~~~~~~~~~~~~l~--~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~ 456 (927)
+..++..+..+|.++...-. +++.+- ++++.|..++.+++ .+..++..+..++..-+..-.--+...+|.+.+
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence 88999999999999864422 222222 35667777777643 455666677666542221111112246788777
Q ss_pred HHhcccCcchhhHHHHHHHHHHHHHHhhCc-chhh--hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccc-
Q 002400 457 ILVNANDKSNRMLRAKSMECISLVGMAVGK-DKFR--DDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQE- 532 (927)
Q Consensus 457 ~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~-~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 532 (927)
.+....+.+ +...++..+-.++..-.. +.+. ..++.++....+ ..+ .-++..+.+++..-|..
T Consensus 419 ~Ll~~~~~~---v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~-------~~D---~lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 419 MLLENSEEE---VQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK-------TRD---PLLLKLIRNISQHDGPLK 485 (708)
T ss_pred HHHhCCCcc---ccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh-------ccc---HHHHHHHHHHHhcCchHH
Confidence 765533221 211112222122111000 0000 112223333222 112 33556777777765432
Q ss_pred --cccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHh--cc
Q 002400 533 --FIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADEL--KE 608 (927)
Q Consensus 533 --~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~--~~ 608 (927)
|.+|+. .+.+.+... +++ ...++++|.++.-. +.
T Consensus 486 ~~f~~~i~----~L~~~v~~~----------------~~e----------------------e~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 486 ELFVDFIG----DLAKIVSSG----------------DSE----------------------EFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHH----HHHHHhhcC----------------CcH----------------------HHHHHHHHHHHhcccCCc
Confidence 334433 333444321 111 12344555555432 11
Q ss_pred cccccHH--HHHHHHhhhhccc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHHHHHHHHccC
Q 002400 609 GFFPWID--QVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQL--TDYIIPALVEALHKE 683 (927)
Q Consensus 609 ~~~~~~~--~~~~~l~~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~~ll~~l~~e 683 (927)
++..++. .++|.+...+... ..+++.-.++-.++.+...- . ...+ -..+++.+++.+..-
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~--------------~-~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP--------------E-CAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH--------------H-HHHHHHhCChHHHHHHHHHhh
Confidence 3333332 3445555544432 24567777777777665321 1 1111 134566666666443
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhh--HHhHHHHHHHHccCCChhHHhhHhHHHHHH
Q 002400 684 PEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKY--YDTYLPFLLEACNDKHPDVRQAAVYGIGVC 761 (927)
Q Consensus 684 ~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~--~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l 761 (927)
. .+.+.-.-.++++..+..|-.. .... -.++...++..++|.|+.+|+.|-.+|..+
T Consensus 589 q--------------------eDdE~VlQil~~f~~ll~h~~t-r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 589 Q--------------------EDDEIVLQILYVFYQLLFHEET-REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred C--------------------chHHHHHHHHHHHHHHHcChHH-HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2 1223333345555555555221 1111 135667888999999999999999999999
Q ss_pred HhhcC
Q 002400 762 AEFGG 766 (927)
Q Consensus 762 ~~~~~ 766 (927)
+++..
T Consensus 648 ~e~d~ 652 (708)
T PF05804_consen 648 AEYDE 652 (708)
T ss_pred HHhCH
Confidence 98754
No 93
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.49 E-value=0.0078 Score=71.56 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=99.3
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
..+..+....|--|+.||+.+++.-+..+. .+.+-..+-..+.|.+..||++|+..+|++.-..+ ++..+++.
T Consensus 823 ~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~-----e~~~qyY~ 895 (1692)
T KOG1020|consen 823 SVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP-----ELIFQYYD 895 (1692)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-----HHHHHHHH
Confidence 344567789999999999999997665322 34566778889999999999999999999876542 45566677
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 435 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l 435 (927)
.+.+.+.| ....||.++...+..+|+..+. + +-.+.+...++.-.++....+++.+..++..+
T Consensus 896 ~i~erIlD-tgvsVRKRvIKIlrdic~e~pd--f-~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 896 QIIERILD-TGVSVRKRVIKILRDICEETPD--F-SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHhhcCC-CchhHHHHHHHHHHHHHHhCCC--h-hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 77888899 8999999999999999988652 2 22334444444444555455666666665554
No 94
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.0058 Score=69.45 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=91.5
Q ss_pred CCCCChhhHHHHHHHHHHHHH---HhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCc-HHHHHHHH
Q 002400 702 GKDKTAEERRIAICIFDDVME---HCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVF-KPLVGEAL 777 (927)
Q Consensus 702 ~~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~-~~~~~~il 777 (927)
..+.+-..|..|+.++..... .....+.|.+....|.++.++.++||-+-+-|+.++-.++.++|+.+ +.+...++
T Consensus 812 LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvl 891 (1014)
T KOG4524|consen 812 LSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVL 891 (1014)
T ss_pred hcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444555556555554333 23556667778889999999999999999999999999999999755 45667778
Q ss_pred HHHHHhhcCCCCC--Cchhh---hHH---HHHHHHHHHHHhhcCC-CCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 002400 778 SRLDFVIRHPNAL--HSDNV---MAY---DNAVSALGKICQFHRD-SIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSM 848 (927)
Q Consensus 778 ~~L~~~l~~~~~~--~~~~~---~~~---~na~~al~~l~~~~~~-~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l 848 (927)
|.+...+.+...+ .++.. ++. -.++.+++.++.+-.- ..++..+.....=++-...+..--..++.++.++
T Consensus 892 P~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~F~~~ 971 (1014)
T KOG4524|consen 892 PWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIARSCFLDL 971 (1014)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHHHHHHHH
Confidence 8777666553211 11111 111 1122222222222110 1134444444444444445544455677777778
Q ss_pred HhccCCcccC
Q 002400 849 VERSDGEILG 858 (927)
Q Consensus 849 ~~~~~~~~~~ 858 (927)
+...+|....
T Consensus 972 V~~ekp~~i~ 981 (1014)
T KOG4524|consen 972 VPVEKPQRIS 981 (1014)
T ss_pred hccCCCcccc
Confidence 8766655443
No 95
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.47 E-value=0.00023 Score=75.51 Aligned_cols=247 Identities=19% Similarity=0.225 Sum_probs=154.0
Q ss_pred hHHHHHHhHHHHHHHHHhhhCCC----------C----HHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHH
Q 002400 174 VSEVLIAHGDTLHEVFSKFLGSN----------N----FDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEA 239 (927)
Q Consensus 174 ~~~~l~~~~~~l~~~l~~~l~~~----------~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~ 239 (927)
+|+.|..++...+..+...+.-+ . ..++..+++.+..++ ..+ .+.|.+++|.+++.++++
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~-~kY-----~e~f~~~l~~fv~~vw~l 145 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYA-EKY-----EEEFEPFLPTFVQAVWNL 145 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHH
Confidence 55666777776666665544311 1 346777777777777 443 256788999999999988
Q ss_pred HhcC-----ChhHHHHHHHHHHHHHccCc--HHH--HHHHHHHHHH-----HH------HHhhcc--CchhhhhCCcc-h
Q 002400 240 LNKG-----NESSAQEALELLIELAATEP--RFL--RKQLVDVVGS-----ML------QVAEAE--AVFPGFLAAPE-W 296 (927)
Q Consensus 240 l~~~-----~~~~~~~a~~~l~~l~~~~~--~~~--~~~l~~ll~~-----ll------~~~~~~--~~i~~~l~~~~-~ 296 (927)
+..- .+.....++.++..+++... ..+ ++++..++.. |. +..+++ +++..-+...+ -
T Consensus 146 L~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~ 225 (370)
T PF08506_consen 146 LTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSD 225 (370)
T ss_dssp HTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccC
Confidence 7432 34556788999988776431 122 3455555443 22 222333 56666665433 5
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhHhhhch------------hHHHH
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS---FQDPHPRVRWAAINAIGQLSTDLGP------------ELQTQ 361 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~---l~d~~~~vr~~a~~~l~~~~~~~~~------------~~~~~ 361 (927)
..|.||...+..+++..++...+.+...+..++.. -...+|+-+.+|+..++.++..... ++..=
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 67888999999998876665544444444444331 1245789999999999999875421 12112
Q ss_pred hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHH
Q 002400 362 FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 432 (927)
Q Consensus 362 ~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al 432 (927)
+...++|.|. .-.+ ..|-+|..|++.+..|-...++ +.+..+++.+..+|.+++..|+..|..||
T Consensus 306 f~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3444566666 2223 5788999999999999887763 46788999999999999988888776554
No 96
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.44 E-value=1e-06 Score=78.58 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=86.0
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLL 367 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il 367 (927)
+++.+.+|..|+.++.+++.++.+.++.....+. .+++.+.+.++|+++.+|..++++++.++...+.......-..++
T Consensus 14 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 14 SLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 4556778999999999999999886554444444 788899999999999999999999999998654333122334589
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
+.+++.+++ .+..++..++++|.++++
T Consensus 94 ~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 999999999 889999999999998864
No 97
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.44 E-value=0.00091 Score=70.76 Aligned_cols=290 Identities=12% Similarity=0.135 Sum_probs=169.1
Q ss_pred hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 002400 181 HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAA 260 (927)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (927)
.+.++.|++..-+.+.-..|...+.++++.+..++. -..++...++.+...+.+..-..+..|+..+.+++-
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--------~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--------GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--------CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 356778888888888778899999999999883332 234566677788888887777778889999999886
Q ss_pred cCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHH
Q 002400 261 TEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVR 340 (927)
Q Consensus 261 ~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr 340 (927)
..|..+.-+-+ -++.+++|.+ |-.+.+|+..+.....+ +.++.++..+...+.|-+...+
T Consensus 333 ~~P~kv~vcN~--------------evEsLIsd~N---r~IstyAITtLLKTGt~---e~idrLv~~I~sfvhD~SD~FK 392 (898)
T COG5240 333 KYPQKVSVCNK--------------EVESLISDEN---RTISTYAITTLLKTGTE---ETIDRLVNLIPSFVHDMSDGFK 392 (898)
T ss_pred hCCceeeecCh--------------hHHHHhhccc---ccchHHHHHHHHHcCch---hhHHHHHHHHHHHHHhhccCce
Confidence 65543322211 1223333443 45566777777665544 4556666555555555444444
Q ss_pred HHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC
Q 002400 341 WAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG 420 (927)
Q Consensus 341 ~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~ 420 (927)
-.+..++..++-.++... ..+ +..|...|.+.+.-.-+.++..++..+++..+.. -+..+..|...+++.
T Consensus 393 iI~ida~rsLsl~Fp~k~-~s~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s-----kEraLe~LC~fIEDc 462 (898)
T COG5240 393 IIAIDALRSLSLLFPSKK-LSY----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS-----KERALEVLCTFIEDC 462 (898)
T ss_pred EEeHHHHHHHHhhCcHHH-HHH----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH-----HHHHHHHHHHHHhhc
Confidence 455666666666665433 223 3333333333245667777777777777665422 234455555555544
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh--HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhh-hHHHHH
Q 002400 421 KQMVQEGALTALASVADSSQGQF--QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRD-DAKQVM 497 (927)
Q Consensus 421 ~~~v~~~a~~al~~l~~~~~~~~--~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~-~~~~i~ 497 (927)
.. -+-++..++-+.+..+..- ..|...+...+. - ++..+|+.|+.|++.++.... +.+.+ -...++
T Consensus 463 ey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----L----EN~ivRsaAv~aLskf~ln~~-d~~~~~sv~~~l 531 (898)
T COG5240 463 EY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLI----L----ENNIVRSAAVQALSKFALNIS-DVVSPQSVENAL 531 (898)
T ss_pred ch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----H----hhhHHHHHHHHHHHHhccCcc-ccccHHHHHHHH
Confidence 31 2233444555554444322 224433333322 1 456799999999999998776 44443 234444
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHH
Q 002400 498 EVLMSLQGSQMEADDPTTSYMLQAWARL 525 (927)
Q Consensus 498 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l 525 (927)
..+++ +.|+.+|..+.-++..+
T Consensus 532 kRcln------D~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 532 KRCLN------DQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHhh------cccHHHHHHHHHHHHhh
Confidence 44443 23566777665555444
No 98
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.44 E-value=0.0041 Score=71.09 Aligned_cols=290 Identities=17% Similarity=0.210 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHH
Q 002400 159 IQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTE 238 (927)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~ 238 (927)
.-..++.+|..+++.......-.-..+++.|.++|..++.++...++.++..+. -.-++... -.-...+|. +.+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~-m~~~giV~k----L~k 338 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDE-MAESGIVEK----LLK 338 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHH-HHHcCCHHH----HHH
Confidence 334678888888887765544445678899999999889999999999998876 32222111 111234444 444
Q ss_pred HHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH--HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc--h
Q 002400 239 ALNKGNESSAQEALELLIELAATEPRFLRKQLV--DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC--S 314 (927)
Q Consensus 239 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~--~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~--~ 314 (927)
++.+++++....++..+.+++-+. . .+..+- .++|.+. .++.+++ .|..++..|..++..- .
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~-~-~R~~mV~~GlIPkLv----------~LL~d~~--~~~val~iLy~LS~dd~~r 404 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDP-E-LRSQMVSLGLIPKLV----------ELLKDPN--FREVALKILYNLSMDDEAR 404 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCH-H-HHHHHHHCCCcHHHH----------HHhCCCc--hHHHHHHHHHHhccCHhhH
Confidence 455677888888999998887542 1 122221 3455444 3334443 4556777777776532 1
Q ss_pred HHHHhhHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHh
Q 002400 315 KVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNF 393 (927)
Q Consensus 315 ~~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l 393 (927)
..+. + ...+|.++..+ ..+++.+...+...+-.++..- ...+.-.-...++.|++......++- ....+.++
T Consensus 405 ~~f~-~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNi 477 (708)
T PF05804_consen 405 SMFA-Y-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNI 477 (708)
T ss_pred HHHh-h-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHH
Confidence 1111 1 12344444432 3355666555555555454421 11111112245666665544313322 23566667
Q ss_pred HhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh--hhhHHhHH--HHHHHHHHHHhcccCcchhhH
Q 002400 394 SENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--GQFQKYYD--AVMPYLKAILVNANDKSNRML 469 (927)
Q Consensus 394 ~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~~--~i~~~L~~~l~~~~~~~~~~l 469 (927)
...-++ .+..+.+.+..|...+...+. -+..+.++|.++...- .+...++. .++|.|.+.+......+ .+
T Consensus 478 S~h~~~--~k~~f~~~i~~L~~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~d--Dl 551 (708)
T PF05804_consen 478 SQHDGP--LKELFVDFIGDLAKIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASED--DL 551 (708)
T ss_pred HhcCch--HHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCCh--HH
Confidence 655432 222233344444455554432 2456666777665542 24556664 68999999997654432 24
Q ss_pred HHHHHHHHHHHH
Q 002400 470 RAKSMECISLVG 481 (927)
Q Consensus 470 r~~a~~~l~~l~ 481 (927)
.-.++-.+|.++
T Consensus 552 ~LE~Vi~~gtla 563 (708)
T PF05804_consen 552 LLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.0022 Score=69.29 Aligned_cols=274 Identities=16% Similarity=0.144 Sum_probs=181.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh-HH
Q 002400 145 IPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE-KE 223 (927)
Q Consensus 145 l~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~ 223 (927)
..-+..+..+.+..+|..|+..+..+.+.+ . .-...++...+.+.|....||.+|++.+.-+. +..+.+.+ ..
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g-n~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF--K---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG-NRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccc--c---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hcCCCcccchh
Confidence 333666777888888888888888777622 2 12346777788899999999999999998888 55431111 11
Q ss_pred hHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHh-----------h---------
Q 002400 224 RFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVA-----------E--------- 282 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~-----------~--------- 282 (927)
.-..+....+..+...+.+....++.+|.+.+..+-.....++.+.+. +++..+-+.- +
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 112344455555666666677777777877776665444445544443 2232111100 0
Q ss_pred -cc-----------Cc--------hhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHH
Q 002400 283 -AE-----------AV--------FPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWA 342 (927)
Q Consensus 283 -~~-----------~~--------i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 342 (927)
++ .. +.-.+.|+-..+|.||+..++.++...+. .-..-++++...++|+-..||--
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHH
Confidence 00 11 11233455689999999999999987664 33456777888889999999999
Q ss_pred HHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCCh
Q 002400 343 AINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQ 422 (927)
Q Consensus 343 a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~ 422 (927)
|..++..++.++. .-++.++.++..|.| .++.||++....|.+. .-.. ...+...+..+++.|...+
T Consensus 430 ai~aL~~Is~~l~------i~eeql~~il~~L~D-~s~dvRe~l~elL~~~----~~~d-~~~i~m~v~~lL~~L~kyP- 496 (823)
T KOG2259|consen 430 AIFALTMISVHLA------IREEQLRQILESLED-RSVDVREALRELLKNA----RVSD-LECIDMCVAHLLKNLGKYP- 496 (823)
T ss_pred HHHHHHHHHHHhe------ecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhc----CCCc-HHHHHHHHHHHHHHhhhCC-
Confidence 9999999998742 344667888899999 8999998877665532 2121 2356677788888777653
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 002400 423 MVQEGALTALASVADSSQG 441 (927)
Q Consensus 423 ~v~~~a~~al~~l~~~~~~ 441 (927)
.-|...+.|++.+++..+.
T Consensus 497 qDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 497 QDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred CCcHHHHHHHHHHhccChh
Confidence 3467788899988876654
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0011 Score=72.69 Aligned_cols=96 Identities=16% Similarity=0.318 Sum_probs=75.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400 325 VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP 404 (927)
Q Consensus 325 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 404 (927)
.+.+-+.|++||..+|...+..+.++-+ .+.+++++|.+..+++. ++..||.+|..|+..+.... +.+-|
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckLkE-------~ELlepl~p~IracleH-rhsYVRrNAilaifsIyk~~--~~L~p 170 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKLKE-------PELLEPLMPSIRACLEH-RHSYVRRNAILAIFSIYKNF--EHLIP 170 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhcCc-------HHHhhhhHHHHHHHHhC-cchhhhhhhheeehhHHhhh--hhhcC
Confidence 3566778999999999999999988755 46789999999999999 99999999999998888774 34567
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTAL 432 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al 432 (927)
-.+.++..++.. ..++..+..|+-.+
T Consensus 171 DapeLi~~fL~~--e~DpsCkRNAFi~L 196 (948)
T KOG1058|consen 171 DAPELIESFLLT--EQDPSCKRNAFLML 196 (948)
T ss_pred ChHHHHHHHHHh--ccCchhHHHHHHHH
Confidence 788888776643 44455566555443
No 101
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=98.40 E-value=3e-05 Score=69.36 Aligned_cols=154 Identities=25% Similarity=0.295 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhcch-hhHHHHHHHHHHHHHhcc--CCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhh-hhhHHHH
Q 002400 103 NLKSVLLVQLQNETN-KSIIKKICDAVSELAASV--LPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMS-QFVSEVL 178 (927)
Q Consensus 103 ~ik~~Ll~~l~~~~~-~~vr~~~~~~i~~ia~~~--~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~-~~~~~~l 178 (927)
.||..|+..|..+.. ...-+.++++++.+|... ++++.|++|...+.... .+++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 478889999987633 234555666666666543 46789999998887754 2223 56899999998 6677778
Q ss_pred HHhHHHHHHHHHhhhCCC---CHHHHHHHHH-HHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 002400 179 IAHGDTLHEVFSKFLGSN---NFDLRIAALE-ATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNE-SSAQEALE 253 (927)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~---~~~vr~~a~~-~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~-~~~~~a~~ 253 (927)
.+.++.+++.+.+.|.++ +.+....|+. ++...+ +.++.+...+.++.++|.+++.+..+++.+.+ .....|++
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~I-ql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~ 157 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAI-QLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLR 157 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 889999999999999987 3333445553 444455 66666666789999999999999999998877 77788888
Q ss_pred HHHHHHcc
Q 002400 254 LLIELAAT 261 (927)
Q Consensus 254 ~l~~l~~~ 261 (927)
-+..+...
T Consensus 158 ~~e~~v~~ 165 (174)
T PF04510_consen 158 DFESFVSR 165 (174)
T ss_pred HHHHHHHH
Confidence 77766543
No 102
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00085 Score=74.46 Aligned_cols=193 Identities=15% Similarity=0.194 Sum_probs=124.4
Q ss_pred hHHHHHHHhcCC-ChHHHHHHHHHHHHhhhhhH----HHHHH-hHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhC
Q 002400 144 LIPFIFQCLVTF-NDKIQESALLILSRMSQFVS----EVLIA-HGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 144 ll~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~----~~l~~-~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~ 216 (927)
=+..|++.+++. ++. ..+..+.++|+.+. +.+.- -++.++|.+...++++ +.++...|++|+..++ +.+
T Consensus 168 k~kkLL~gL~~~~Des---~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~-evl 243 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDES---QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLC-EVL 243 (1051)
T ss_pred HHHHHHHhccccCChH---HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-hhc
Confidence 355666666654 553 35666666666542 22221 3678999999999988 8999999999999999 888
Q ss_pred CCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHH--HHHHHHHHHHHHhhccCchhhhhCCc
Q 002400 217 PSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRK--QLVDVVGSMLQVAEAEAVFPGFLAAP 294 (927)
Q Consensus 217 ~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~l~~ll~~ll~~~~~~~~i~~~l~~~ 294 (927)
+.+...-.-...+|.+++.|..+ ..-+++.++++.+..|....|+.+-+ .+-.++.++ .++
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-----------DFF--- 306 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-----------DFF--- 306 (1051)
T ss_pred cchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-----------HHH---
Confidence 75432212233677777766532 34568888998888888776654322 223333332 111
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchh
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPE 357 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 357 (927)
.....+.|+..-..++......-..++-+.+|.+.+.|+..+.++-..++.|+.++++.+.+.
T Consensus 307 Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 307 SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 122334444444444444333223455677899999999999999999999999999987543
No 103
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.0046 Score=64.27 Aligned_cols=149 Identities=14% Similarity=0.184 Sum_probs=100.7
Q ss_pred CCcchhHHHHHHHHHHHHhhhchH-HHHhhHHHHH--------HHH-HhccCCCCHHHHHHHHHHHHHhHhhhc------
Q 002400 292 AAPEWQKHHAVLIALAQIAEGCSK-VMIKNLDQVV--------SMV-LNSFQDPHPRVRWAAINAIGQLSTDLG------ 355 (927)
Q Consensus 292 ~~~~~~~r~aal~al~~i~~~~~~-~~~~~l~~l~--------~~l-~~~l~d~~~~vr~~a~~~l~~~~~~~~------ 355 (927)
.+..-++|..|+.++.......+. .+..|...++ |.+ .-+|+|++++.|.-|+..++++.+.-.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345678999999999988876654 2223333333 223 346899999999999999988765321
Q ss_pred ----hhHHHH-------hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC-chHHHHHHHHHHhcCCChh
Q 002400 356 ----PELQTQ-------FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP-YLDGIVSKLLVLLQNGKQM 423 (927)
Q Consensus 356 ----~~~~~~-------~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~-~l~~l~~~L~~~l~~~~~~ 423 (927)
+....+ -..+....++..+.....+.+-..+.++|.+++...+.+.++- ++-.++..+-+.+++.++.
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 110011 1223333444445443567788889999999998877554432 5667788888888999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002400 424 VQEGALTALASVADSSQ 440 (927)
Q Consensus 424 v~~~a~~al~~l~~~~~ 440 (927)
|+-.++..++.++....
T Consensus 166 v~vs~l~~~~~~v~t~~ 182 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHA 182 (728)
T ss_pred hhhHHHHHHHHHHhcCC
Confidence 99999999999886543
No 104
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00057 Score=75.74 Aligned_cols=203 Identities=15% Similarity=0.163 Sum_probs=132.4
Q ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 321 LDQVVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 321 l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
.+.++|.++..|+++ ++.+..-||.|+..+++.+++....-.....+|.+++.|.--.-..|.+.+..+|..+.+..+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 467899999999886 6889999999999999998876633344468999999887645678999999999999887765
Q ss_pred ccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHH
Q 002400 400 DILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISL 479 (927)
Q Consensus 400 ~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~ 479 (927)
..++. .-+...+..++--+..++..|+....+.+..+..+-..|+-..+|.|..+++..++ ..-..+.-|+..
T Consensus 289 AiL~A---G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~----k~ies~~ic~~r 361 (1051)
T KOG0168|consen 289 AILQA---GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK----KPIESVCICLTR 361 (1051)
T ss_pred HHHhc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc----hhHHHHHHHHHH
Confidence 54432 12233344444445678888998888888888877667788889999999987432 233334457777
Q ss_pred HHHhh--CcchhhhhH-HHHHHHHHHHhcc-CCCCCCcchHHHHHHHHHHHHHhc
Q 002400 480 VGMAV--GKDKFRDDA-KQVMEVLMSLQGS-QMEADDPTTSYMLQAWARLCKCLG 530 (927)
Q Consensus 480 l~~~~--~~~~~~~~~-~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 530 (927)
++... +++++.+.+ ..++..+.++..- ...........++..+..++...+
T Consensus 362 i~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~p 416 (1051)
T KOG0168|consen 362 IADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSP 416 (1051)
T ss_pred HHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCCh
Confidence 77543 233444332 2344433332221 001112344445555555554433
No 105
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.32 E-value=0.013 Score=66.33 Aligned_cols=148 Identities=12% Similarity=0.141 Sum_probs=111.9
Q ss_pred hHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcC-CCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHH
Q 002400 731 YYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGG-SVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 731 ~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 809 (927)
++.++.|.+++.+....-..|.+-..+|..+..+.| +.+.|..+.+++.|.+.+.-++ ..+|-....++.-++
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD------VIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc------cchhhhHhhhhhHHH
Confidence 566888999999887677889999999999998877 5778999999999999998775 335555667777777
Q ss_pred hhcCCCC--CHhhHHHHHHhcCCCCCc---HHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcH
Q 002400 810 QFHRDSI--DAAQVVPAWLSCLPLKGD---LIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTE 884 (927)
Q Consensus 810 ~~~~~~~--~~~~~l~~~l~~Lp~~~d---~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 884 (927)
...+... +++.++|.+|+-= ...| ...+..+++||..|-+..|...+.+ .-|+++..+...|. ++..
T Consensus 938 ~~~~tL~t~~~~Tlvp~lLsls-~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~---fr~~Vl~al~k~Ld----DkKR 1009 (1030)
T KOG1967|consen 938 TESETLQTEHLSTLVPYLLSLS-SDNDNNMMVVREDALQCLNALTRRLPTKSLLS---FRPLVLRALIKILD----DKKR 1009 (1030)
T ss_pred HhccccchHHHhHHHHHHHhcC-CCCCcchhHHHHHHHHHHHHHhccCCCccccc---ccHHHHHHhhhccC----cHHH
Confidence 7777766 7999999988742 2233 5678899999999998555544333 68899999999885 3344
Q ss_pred HHHHHHHH
Q 002400 885 QTASRMIN 892 (927)
Q Consensus 885 ~~~~~~~~ 892 (927)
-+|.+.++
T Consensus 1010 lVR~eAv~ 1017 (1030)
T KOG1967|consen 1010 LVRKEAVD 1017 (1030)
T ss_pred HHHHHHHH
Confidence 55555543
No 106
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.30 E-value=0.00011 Score=76.03 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=141.7
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH-HhHHhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHc
Q 002400 183 DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK-ERFLDLLPLMMRTLTEALNK-GNESSAQEALELLIELAA 260 (927)
Q Consensus 183 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~~~p~ll~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 260 (927)
+.+...+.+.-+++..+-+..|+.-+..+. .. ..-.-| +.|..++-.++++ +.+ .++.....|+.++..+++
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~-~e-~sfsvWeq~f~~iL~~l~Ev----L~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKML-CE-GSFSVWEQHFAEILLLLLEV----LSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHH-Hc-cchhHHHHHHHHHHHHHHHH----HccchhhHHHHHHHHHHHHHHH
Confidence 333444433333335566777777666655 11 011111 2344444444444 434 567778899999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHH
Q 002400 261 TEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVR 340 (927)
Q Consensus 261 ~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr 340 (927)
+.|..+..+....+...++...| ..+-..|.|+--++..++...+. ..+..+.+.++. .+...-
T Consensus 360 ~Q~~~l~DstE~ai~K~Leaa~d---------s~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt----~D~~~~ 423 (516)
T KOG2956|consen 360 NQPARLFDSTEIAICKVLEAAKD---------SQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT----ADEPRA 423 (516)
T ss_pred hchHhhhchHHHHHHHHHHHHhC---------CchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc----CcchHH
Confidence 99888888877777666644433 23445666666666666665554 334444555544 333344
Q ss_pred HHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHh
Q 002400 341 WAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLL 417 (927)
Q Consensus 341 ~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l 417 (927)
.++++++.++.+.+..+.....++.+.|.+++..++ .+..||..|..||..+....+.+.++||+.++-..=++++
T Consensus 424 ~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S-~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS-TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC-chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 577789999999888777678999999999999999 8999999999999999999997778999988655544443
No 107
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.29 E-value=0.00011 Score=75.94 Aligned_cols=193 Identities=13% Similarity=0.162 Sum_probs=142.3
Q ss_pred HHHHHHH-HHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 002400 247 SAQEALE-LLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVV 325 (927)
Q Consensus 247 ~~~~a~~-~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~ 325 (927)
....|+. +..-+++..-....+|...++..+++++++ +.+...|.-|+..|+.+.+.-+..+..+-.-.+
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d---------~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai 373 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD---------SEDEIIKKLALRVLREMLTNQPARLFDSTEIAI 373 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc---------chhhHHHHHHHHHHHHHHHhchHhhhchHHHHH
Confidence 3455554 333445666677888889988888865543 256778899999999999988887777777777
Q ss_pred HHHHhccCCCCHHHHHHHHH-HHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400 326 SMVLNSFQDPHPRVRWAAIN-AIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP 404 (927)
Q Consensus 326 ~~l~~~l~d~~~~vr~~a~~-~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 404 (927)
..++..-.|.++.|-..|.. |+..++.+.+- .-+..+.|.++. .| ...-..+...+..+++..+.+.+-+
T Consensus 374 ~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----~~I~~i~~~Ilt--~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ 444 (516)
T KOG2956|consen 374 CKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----QCIVNISPLILT--AD---EPRAVAVIKMLTKLFERLSAEELLN 444 (516)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHhhCch----hHHHHHhhHHhc--Cc---chHHHHHHHHHHHHHhhcCHHHHHH
Confidence 77777788888766555544 45555554432 334455555555 22 3333466678999999999888888
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh-hhhHHhHHHHHHHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-GQFQKYYDAVMPYLKAI 457 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~L~~~ 457 (927)
.++.+.+.+++..++.+..||..++.|+-.++..+| +.+.||+..+-..-.++
T Consensus 445 ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 445 LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNL 498 (516)
T ss_pred hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHH
Confidence 999999999999999999999999999999999999 78999988765443333
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.28 E-value=1.1e-06 Score=64.89 Aligned_cols=55 Identities=29% Similarity=0.431 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHH
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVC 761 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l 761 (927)
|.+|..|+.+||.+++..+....++.+.++|.|...+.|+++.||.+|+++||.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999964
No 109
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.013 Score=63.95 Aligned_cols=373 Identities=15% Similarity=0.198 Sum_probs=214.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHH-HhhcccCcccccccc----ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 002400 54 AFALNLSRMLSSSSLPECRAMSAILL-RKHLTRDDSTSFIFT----RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAV 128 (927)
Q Consensus 54 ~~~~~L~~il~~~~~~~~R~~a~v~L-k~~i~~~~~~~~~w~----~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i 128 (927)
.|+..|+.|...+.+...-++-|+-| +........-+-.+- .-+.+.-..+-+.+..-|.+. ++....-+-++|
T Consensus 57 KYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~sr-n~~fv~LAL~~I 135 (938)
T KOG1077|consen 57 KYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSR-NPTFVCLALHCI 135 (938)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcC-CcHHHHHHHHHH
Confidence 47888888877666666666655543 222111100000000 011222223333444444443 666666667788
Q ss_pred HHHHhccCCCCCccchHHHHHHHhcC--CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHH
Q 002400 129 SELAASVLPDGDWPELIPFIFQCLVT--FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALE 206 (927)
Q Consensus 129 ~~ia~~~~~~~~w~~ll~~l~~~l~s--~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~ 206 (927)
+.|...+.- ..+-+.+-.++-| ..+-+|..+..||..+....++.+. .......+...|.|.+..|..++..
T Consensus 136 ~niG~re~~----ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~--~~~W~~riv~LL~D~~~gv~ta~~s 209 (938)
T KOG1077|consen 136 ANIGSREMA----EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN--PGEWAQRIVHLLDDQHMGVVTAATS 209 (938)
T ss_pred HhhccHhHH----HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC--hhhHHHHHHHHhCccccceeeehHH
Confidence 887665443 1223333344433 3456889999999999988776432 3345666778888888888888888
Q ss_pred HHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChh-------------HHHHHHHHHHHHHccCcHHHHHHHHHH
Q 002400 207 ATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNES-------------SAQEALELLIELAATEPRFLRKQLVDV 273 (927)
Q Consensus 207 ~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~-------------~~~~a~~~l~~l~~~~~~~~~~~l~~l 273 (927)
.+..++ ...+ +.+..-+|.-+..+.........+ .....+..+...-.-+..-.+..+..+
T Consensus 210 Li~~lv-k~~p-----~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~ev 283 (938)
T KOG1077|consen 210 LIEALV-KKNP-----ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEV 283 (938)
T ss_pred HHHHHH-HcCC-----HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 777777 4432 446666666666666554322111 112222222222111111223334444
Q ss_pred HHHHHHHhhccCchhhhhCCcchhHH---HHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 274 VGSMLQVAEAEAVFPGFLAAPEWQKH---HAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 274 l~~ll~~~~~~~~i~~~l~~~~~~~r---~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
+..++..+.+. -++.+...+ .|.++-.-.++-.... -...+.+-+..+-..+.+.++.+|+-|+..+..+
T Consensus 284 l~~iLnk~~~~------~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L 356 (938)
T KOG1077|consen 284 LERILNKAQEP------PKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIRYLALESMCKL 356 (938)
T ss_pred HHHHHhccccC------ccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 44444222211 122333333 3333322222222111 1133556667778888999999999999999888
Q ss_pred HhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHH
Q 002400 351 STDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALT 430 (927)
Q Consensus 351 ~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~ 430 (927)
+..- ... .-...-...++..|+-.++..+|..|...|..+|+... ...|+..+++.+.+.+..+|+....
T Consensus 357 ~ss~-~s~--davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------ak~IV~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 357 ASSE-FSI--DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------AKQIVAELLQYLETADYSIREEIVL 426 (938)
T ss_pred Hhcc-chH--HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHhhcchHHHHHHHH
Confidence 8742 111 11222245556667722788999999999999997654 4567888888888999999999999
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHH
Q 002400 431 ALASVADSSQGQFQKYYDAVMPYLKA 456 (927)
Q Consensus 431 al~~l~~~~~~~~~~~~~~i~~~L~~ 456 (927)
-++-+++....+..=|.+.++..+.-
T Consensus 427 KvAILaEKyAtDy~WyVdviLqLiri 452 (938)
T KOG1077|consen 427 KVAILAEKYATDYSWYVDVILQLIRI 452 (938)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 99999988887777777766665543
No 110
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.24 E-value=0.00032 Score=74.43 Aligned_cols=215 Identities=16% Similarity=0.177 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-----CHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHH
Q 002400 158 KIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-----NFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLP 230 (927)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p 230 (927)
.++...+..+....+.+.+.+.++++.++..+.+.+..- ...+-..|++.|..++ .. ......| .+.+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~-~~---~~~~~lf~~~~~L~ 186 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVA-ES---PHHKNLFENKPHLQ 186 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHH-TS---HHHHTTT-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-cc---hhHHHHhCCHHHHH
Confidence 467778888888888888888888888888777776542 3345666777777766 21 1111111 12222
Q ss_pred HHHHHH-HH----------HHhc-------------CChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH-HhhccC
Q 002400 231 LMMRTL-TE----------ALNK-------------GNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQ-VAEAEA 285 (927)
Q Consensus 231 ~ll~~l-~~----------~l~~-------------~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~-~~~~~~ 285 (927)
.+++.+ .. +.++ +....+..|++++..+++..++-+.+.+...+..+++ ..+++
T Consensus 187 ~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~- 265 (370)
T PF08506_consen 187 QIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP- 265 (370)
T ss_dssp HHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC-
Confidence 222211 11 0110 1123456788888888865333333333333333321 11121
Q ss_pred chhhhhCCcchhHHHHHHHHHHHHhhhchH------------HHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHh
Q 002400 286 VFPGFLAAPEWQKHHAVLIALAQIAEGCSK------------VMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLST 352 (927)
Q Consensus 286 ~i~~~l~~~~~~~r~aal~al~~i~~~~~~------------~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 352 (927)
+.+|+.+.+|+..+++++..... .+...+. .++|.+. .-.+.+|.+|..|++.+..+..
T Consensus 266 -------~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~ 337 (370)
T PF08506_consen 266 -------SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRN 337 (370)
T ss_dssp -------TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGG
T ss_pred -------cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHh
Confidence 46899999999999999975422 0111111 1223333 2225689999999999999988
Q ss_pred hhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHH
Q 002400 353 DLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAV 390 (927)
Q Consensus 353 ~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al 390 (927)
.+++ +.+..++|.++.+|.+ ++..|+.+|+.++
T Consensus 338 ~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 338 QLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp GS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred hCCH----HHHHHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 7754 5678899999999999 8899999998774
No 111
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.021 Score=65.12 Aligned_cols=350 Identities=14% Similarity=0.118 Sum_probs=175.7
Q ss_pred HHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcccc----CchHHHHHHHHHHh
Q 002400 342 AAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILT----PYLDGIVSKLLVLL 417 (927)
Q Consensus 342 ~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~----~~l~~l~~~L~~~l 417 (927)
.++..+|.++...+.++......-+.|.+ ..+.+ +++.++..|-.|+-.++..+...... ...+-++..+-..+
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl-~k~a~-~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L 644 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVL-EKLAS-PSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRL 644 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHH-HHhcC-chHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHh
Confidence 45677888888888888555555555554 45555 68899999999999999888754322 22334445544444
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCc----chhh-hh
Q 002400 418 QNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGK----DKFR-DD 492 (927)
Q Consensus 418 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~----~~~~-~~ 492 (927)
+... +-.++-..+..+....+....|+++.++..+...+....+.... .-+..+..+....+. +.+. ..
T Consensus 645 ~~~~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~----~~~~ll~s~ik~~~~~~~~~~il~~~ 718 (1014)
T KOG4524|consen 645 NTSG--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCL----QFFQLLHSIIKEMKKKYINDEILGHI 718 (1014)
T ss_pred ccCC--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHHHHhhccccchhhHHH
Confidence 4222 11233345555566666667788888888888877554332100 111122222222220 0011 11
Q ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCC-cch
Q 002400 493 AKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDE-DES 571 (927)
Q Consensus 493 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~-~~~ 571 (927)
.++....--...+ .++.......+..+ .|...+.+........+.+....+.++.++.+.+ +++
T Consensus 719 ~d~~~~~~~k~l~--------e~p~~~~e~~n~~~-------d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~ede 783 (1014)
T KOG4524|consen 719 ADQHISQSTKVLN--------ELPTQVKELINDEN-------DLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDE 783 (1014)
T ss_pred HHHHHHHHHHHhh--------cchhhHHHhhhhHH-------HHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCcccc
Confidence 1111110000000 01112222222221 2333333333333222111111111111111111 111
Q ss_pred hhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHH
Q 002400 572 IQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA 651 (927)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~ 651 (927)
-+.... .+.. .+.-...+.+++.....++++. +-.+|-.+..++...+.....
T Consensus 784 ns~~~d-~ep~------------------------~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~- 836 (1014)
T KOG4524|consen 784 NSEYTD-TEPI------------------------LPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLAT- 836 (1014)
T ss_pred ccCCCC-CCCC------------------------CChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhc-
Confidence 110000 0000 0111122556666677777764 677899998888766544321
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhh-
Q 002400 652 VEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALK- 730 (927)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~- 730 (927)
-.+.+-+++....|.+++.+..++ +-.-..|+.++-.+++++|+-+..
T Consensus 837 ---------~~n~LlPlvhq~W~~vie~~~~k~----------------------~L~v~~a~~~i~~m~~~sgDFv~sR 885 (1014)
T KOG4524|consen 837 ---------YHNLLLPLVHQTWPSVIECLLCKD----------------------PLIVQRAFSCIEQMGKYSGDFVASR 885 (1014)
T ss_pred ---------cchhHhHHHHhhhhHHHHHHhcCc----------------------hHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 123366677777788787776653 566677888999999999987765
Q ss_pred hHHhHHHHHHHHccCCC------hhHHhhHhHHHHHHHhhcCCCcHHH
Q 002400 731 YYDTYLPFLLEACNDKH------PDVRQAAVYGIGVCAEFGGSVFKPL 772 (927)
Q Consensus 731 ~~~~ll~~l~~~l~d~~------~~vr~~a~~~lg~l~~~~~~~~~~~ 772 (927)
+++.++|.+-..+.+.. +.--+.+.|-++.-+..+...+.+|
T Consensus 886 ~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~ 933 (1014)
T KOG4524|consen 886 FLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPY 933 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCccee
Confidence 77888887775554322 2233455666665444433333333
No 112
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0016 Score=71.18 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=117.9
Q ss_pred CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH
Q 002400 285 AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLN-SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH 363 (927)
Q Consensus 285 ~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 363 (927)
++|.+++.|.++-.|.+++++++.--.|.++ ...+..++. ..+|.|..||++|..+||-++-.-
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------- 586 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------- 586 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC---------
Confidence 7888999999999999999988754433332 123333333 378999999999999999876421
Q ss_pred hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh
Q 002400 364 HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF 443 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 443 (927)
+..+|..++.|.++-++.||-.++.+|+-.|...+. ...+..|-.+.+++...||..|+.+++.+.-...+..
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 144666777777656899999999999999887662 3344555556678888999999999999988877777
Q ss_pred HHhHHHHHHHHHHHHhccc
Q 002400 444 QKYYDAVMPYLKAILVNAN 462 (927)
Q Consensus 444 ~~~~~~i~~~L~~~l~~~~ 462 (927)
.|-+..+...+.+.+.+..
T Consensus 660 ~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 660 CPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred CchHHHHHHHHHHHhhhhh
Confidence 8888888888888876643
No 113
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.014 Score=61.54 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=126.3
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVG 372 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~ 372 (927)
+..|+.|......++.+....--.-.+.+..++..+.....||+..+|..|+.+|+..++..+... ..+...++..++.
T Consensus 228 s~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~ 306 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIR 306 (533)
T ss_pred hhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHH
Confidence 456888887777776665431111124577888888899999999999999999999999765555 6788899999999
Q ss_pred hccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHh
Q 002400 373 AMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446 (927)
Q Consensus 373 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 446 (927)
.|.|..+..|.-.+..+|..+.+......+.+|+-.+.-.+..++++.++++|..++..+|.++...|..-..+
T Consensus 307 gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 307 GLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 98885678999999999999999888888999999999999999999999999999999999998888765443
No 114
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.16 E-value=5.7e-06 Score=73.65 Aligned_cols=110 Identities=24% Similarity=0.255 Sum_probs=87.8
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHh-hHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc
Q 002400 324 VVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHH-RLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL 402 (927)
Q Consensus 324 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 402 (927)
+++.+.+.+.+.++.+|..++++++.++....... ..+.. .++|.+++.+.+ +++.++..++++|.+++...+.. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~-~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDN-K 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHH-H
Confidence 56777788888899999999999999998643333 34444 899999999999 89999999999999998765321 1
Q ss_pred cCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 403 TPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 403 ~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
..+. ..+++.+...+++.+..+++.++.++..++
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122 347888899999999999999999998875
No 115
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0071 Score=65.58 Aligned_cols=261 Identities=18% Similarity=0.192 Sum_probs=162.2
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC
Q 002400 183 DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE 262 (927)
Q Consensus 183 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (927)
..+..-+.....+.+..||..|++.+..+- +.+. +-..+-+...+.+.+.+++++..|+..+.-.....
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~-eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALS-EGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhc-cccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 344554666777889999999999999887 4331 11223334445556677888877765443333222
Q ss_pred c------HHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHH----------
Q 002400 263 P------RFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVV---------- 325 (927)
Q Consensus 263 ~------~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~---------- 325 (927)
| .-=..+....+..+. ..+.|-+|.+|.-|..+||.+-.-..+.+...++ +++
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC----------~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah 335 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVC----------RAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH 335 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHH----------HHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 1 011223333343333 3445667777777777777655443333322222 122
Q ss_pred ----------------------------------------HHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 326 ----------------------------------------SMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 326 ----------------------------------------~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
..++-+|.|+-..||.+|...++.++..- | .+-..
T Consensus 336 krpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P----~FA~~ 410 (823)
T KOG2259|consen 336 KRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-P----GFAVR 410 (823)
T ss_pred cchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-C----CcHHH
Confidence 12344556666789999999999998743 2 35567
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK 445 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 445 (927)
.+..|+..++| ....||..|..+|..+..... + -+.-++.++..|.+.+..+|+.+-..++..-.. =..
T Consensus 411 aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~---i---~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~----d~~ 479 (823)
T KOG2259|consen 411 ALDFLVDMFND-EIEVVRLKAIFALTMISVHLA---I---REEQLRQILESLEDRSVDVREALRELLKNARVS----DLE 479 (823)
T ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhe---e---cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----cHH
Confidence 78888999999 888999999999999987743 1 244556667777888999998876666543211 123
Q ss_pred hHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 446 YYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 446 ~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
-++..+..|...+.....+ |...+.|++.|+..-+
T Consensus 480 ~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 480 CIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred HHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 4555666666666553222 2335779999887655
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.09 E-value=0.0017 Score=69.95 Aligned_cols=251 Identities=18% Similarity=0.086 Sum_probs=166.5
Q ss_pred HHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHH
Q 002400 44 LSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKK 123 (927)
Q Consensus 44 l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~ 123 (927)
|..+...-|. -+..|+..+....+.+++..++..|.. |.. ......|+..|.+. ++.||..
T Consensus 45 LdgL~~~G~~-a~~~L~~aL~~d~~~ev~~~aa~al~~-----------~~~------~~~~~~L~~~L~d~-~~~vr~a 105 (410)
T TIGR02270 45 VDGLVLAGKA-ATELLVSALAEADEPGRVACAALALLA-----------QED------ALDLRSVLAVLQAG-PEGLCAG 105 (410)
T ss_pred HHHHHHhhHh-HHHHHHHHHhhCCChhHHHHHHHHHhc-----------cCC------hHHHHHHHHHhcCC-CHHHHHH
Confidence 4444443343 356777777667778888877766531 111 11357788888865 8889999
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHH
Q 002400 124 ICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIA 203 (927)
Q Consensus 124 ~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~ 203 (927)
++.+++.| ..+...+.|...+.+.++.+|..++.+++..-.. -.+.+...++|+++.||..
T Consensus 106 aa~ALg~i--------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 106 IQAALGWL--------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHhcC--------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHH
Confidence 99999753 4577889999999999999999888777752211 2345666677999999999
Q ss_pred HHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhc
Q 002400 204 ALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEA 283 (927)
Q Consensus 204 a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~ 283 (927)
|+.+++.+- . ...+|. +...+.+.++.++..++..+..+-. +. -++.+.
T Consensus 167 A~raLG~l~-~-----------~~a~~~----L~~al~d~~~~VR~aA~~al~~lG~--~~--------A~~~l~----- 215 (410)
T TIGR02270 167 ALRALGELP-R-----------RLSEST----LRLYLRDSDPEVRFAALEAGLLAGS--RL--------AWGVCR----- 215 (410)
T ss_pred HHHHHHhhc-c-----------ccchHH----HHHHHcCCCHHHHHHHHHHHHHcCC--Hh--------HHHHHH-----
Confidence 999999876 2 123333 3344567889999988888755532 11 112222
Q ss_pred cCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH
Q 002400 284 EAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH 363 (927)
Q Consensus 284 ~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 363 (927)
.+...+.+..+..+...++.. + -+..++.+...++|+. ||..+++++|.+..
T Consensus 216 -----~~~~~~g~~~~~~l~~~lal~--~--------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------- 267 (410)
T TIGR02270 216 -----RFQVLEGGPHRQRLLVLLAVA--G--------GPDAQAWLRELLQAAA--TRREALRAVGLVGD----------- 267 (410)
T ss_pred -----HHHhccCccHHHHHHHHHHhC--C--------chhHHHHHHHHhcChh--hHHHHHHHHHHcCC-----------
Confidence 111234444444444444332 1 1257777777888755 99999999998754
Q ss_pred hhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 364 HRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
...++.|+..+.+ +.++..|..++..+.
T Consensus 268 p~av~~L~~~l~d---~~~aR~A~eA~~~It 295 (410)
T TIGR02270 268 VEAAPWCLEAMRE---PPWARLAGEAFSLIT 295 (410)
T ss_pred cchHHHHHHHhcC---cHHHHHHHHHHHHhh
Confidence 2567888888887 348888888888775
No 117
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.07 E-value=4.8e-05 Score=70.60 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH----------------HHHHh
Q 002400 118 KSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE----------------VLIAH 181 (927)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~----------------~l~~~ 181 (927)
+.||+++|.+++.|+.+++| ..||++++.+++.+++ ++.....++.+|..+.+.+.+ .+..+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999 8899999999999887 577888899999999887753 12335
Q ss_pred HHHHHHHHHhhhCCCC----HHHHHHHHHHHHHHHHhhC
Q 002400 182 GDTLHEVFSKFLGSNN----FDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~----~~vr~~a~~~l~~l~~~~~ 216 (927)
.+.+++.+.+.++... .++...+++++.+++ ..+
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i-~~~ 117 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWI-SWI 117 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHT-TTS
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-HhC
Confidence 6778888888877642 789999999999999 655
No 118
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.07 E-value=0.0026 Score=69.20 Aligned_cols=236 Identities=13% Similarity=0.154 Sum_probs=141.9
Q ss_pred HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhc----C-CChhHHHHHHHHHHH
Q 002400 360 TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQ----N-GKQMVQEGALTALAS 434 (927)
Q Consensus 360 ~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~----~-~~~~v~~~a~~al~~ 434 (927)
.++...++..|+..+.. +...=-+...+|+-+++-..+ +.+.|+...+++.|...+. + .++.--...+++|+.
T Consensus 21 ~p~~~~ll~~Lf~~i~~-~~s~ENeylMk~iMRvl~~~~-e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEK-PGSAENEYLMKCIMRVLSVLQ-EDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp TCCHHHHHHHHHHHHHT-T-STC-HHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 45677788888888765 222222445566666665555 3456888888888877653 3 356777889999999
Q ss_pred HHHHhhh----hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH--HhccCC
Q 002400 435 VADSSQG----QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQM 508 (927)
Q Consensus 435 l~~~~~~----~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~--~~~~~~ 508 (927)
+++...+ ....+-+.++|.+..+|++ +..+.-..++..++.+...-......+.-..+++.++. +|..
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~----dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~-- 172 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQ----DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER-- 172 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHT----T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS--
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc--
Confidence 9877553 2346778889999999887 33345555677777776554322232222333443332 2221
Q ss_pred CCCCcchHHHHHHHHHHHHHhccccc--cchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeech
Q 002400 509 EADDPTTSYMLQAWARLCKCLGQEFI--PYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKT 586 (927)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (927)
..--..+.+.+..+.+.-+..+. .++..++...-+.+..+..
T Consensus 173 ---~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--------------------------------- 216 (435)
T PF03378_consen 173 ---RGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--------------------------------- 216 (435)
T ss_dssp ---TTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC---------------------------------
T ss_pred ---CCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc---------------------------------
Confidence 11235555666666666666553 6777788777777755421
Q ss_pred hhHHhHHHHHHHHHHHHHHhcc-cccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHH
Q 002400 587 SVLEEKATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 644 (927)
Q Consensus 587 ~~~~~k~~a~~~l~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l 644 (927)
-..++++|..+...++. .+.||++.++..++..+..+..+..++.-+..++.+
T Consensus 217 -----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 217 -----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp -----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 03477889999999987 589999999999999998765555555444444433
No 119
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.05 E-value=8.6e-05 Score=70.69 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=96.9
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhc
Q 002400 706 TAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIR 785 (927)
Q Consensus 706 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 785 (927)
++.+|..++.++|+++...+.-+ +..+|.+..+++|+++.||.+|..++..++...--.+.+ .++..+...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~---~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG---QLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh---hhhHHHHHHHc
Confidence 36789999999999999988754 455667788999999999999999999999875444443 34455555666
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhh-cCCCCCHhhHHHHHHhcCCC--------CCcHHHHHHHHHHHHHHHhc
Q 002400 786 HPNALHSDNVMAYDNAVSALGKICQF-HRDSIDAAQVVPAWLSCLPL--------KGDLIEAKVVHAQLCSMVER 851 (927)
Q Consensus 786 ~~~~~~~~~~~~~~na~~al~~l~~~-~~~~~~~~~~l~~~l~~Lp~--------~~d~~e~~~~~~~l~~l~~~ 851 (927)
|+ +..+++.|..++..+... .|.. +...+|..+..|.. ..+.+++...++++...+.+
T Consensus 74 D~------~~~Ir~~A~~~~~e~~~~~~~~~--i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 74 DE------NPEIRSLARSFFSELLKKRNPNI--IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred CC------CHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 66 467999999999999987 5444 45556666665543 24556677777887777753
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00062 Score=75.74 Aligned_cols=234 Identities=15% Similarity=0.204 Sum_probs=170.3
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHh
Q 002400 367 LPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446 (927)
Q Consensus 367 l~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 446 (927)
+...+..+.| +.+.+|.++..-+..+++.-.+.. .-....++...+..+++.++.|--.|+..+.++++. |
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 5556667777 788899999999999998654332 235678899999999999999988888888888876 4
Q ss_pred HHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 002400 447 YDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLC 526 (927)
Q Consensus 447 ~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 526 (927)
-+.++|.+.....+..+......|-+.=|++..++.+.| +.+..|...+++.++.... +.+...|.+.+..++.+|
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 456777777654443333322334444589999999999 7888888899998887443 235568999999999999
Q ss_pred HHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHh
Q 002400 527 KCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADEL 606 (927)
Q Consensus 527 ~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~ 606 (927)
+...-....++..+...++.....+.. .--|.+|.+++..+..++
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s-----------------------------------~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGS-----------------------------------VLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCc-----------------------------------hhhHHHHHHHHHHHHhcc
Confidence 988766666777777777776654211 123678999999999999
Q ss_pred cccccccH----HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 002400 607 KEGFFPWI----DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648 (927)
Q Consensus 607 ~~~~~~~~----~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~ 648 (927)
|....|+. -+....+.+++....++.+|.-|..++..+-...
T Consensus 921 g~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 921 GEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 99888854 3444555666666556677877777777765543
No 121
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.02 E-value=0.00015 Score=69.00 Aligned_cols=110 Identities=17% Similarity=0.328 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhc
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAM 374 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l 374 (927)
++.+|..++.++|.++...+. .++..++.+...|+|++|.||..|+.++..+... ++ -..-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DM-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cc-eeehhhhhHHHHHHH
Confidence 467899999999999887765 4556677888899999999999999999998763 22 234456667788888
Q ss_pred cCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHH
Q 002400 375 DDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKL 413 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L 413 (927)
.| +++.||..|..++..+.....++.+..+++.++..+
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99 999999999999999988755554544444444444
No 122
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=98.00 E-value=0.00019 Score=67.00 Aligned_cols=138 Identities=22% Similarity=0.304 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 319 KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
..++.++..+...++++++.-|+.++..++..++..+.+....+....+..+++.++....+.+.+.++.++..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45777888899999999999999999999999998877776678888999999999885567889999999999987653
Q ss_pred C------ccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH
Q 002400 399 P------DILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAIL 458 (927)
Q Consensus 399 ~------~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l 458 (927)
. +...|.++.+++.++.++++ ....+.++.++..+....+..|.||...+-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 45678999999999999886 5677889999999999999999999988877776654
No 123
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.049 Score=60.24 Aligned_cols=670 Identities=13% Similarity=0.138 Sum_probs=312.0
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC--ChHHHHHHHHHHH-HhhhhhHHHH
Q 002400 102 ANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF--NDKIQESALLILS-RMSQFVSEVL 178 (927)
Q Consensus 102 ~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~--~~~~r~~al~~l~-~l~~~~~~~l 178 (927)
+.+++.+.+.|.. ++.+|+.+-..+-.+ .+-|.++..+.+.+.++ +.++|..|..-+. .+...-....
T Consensus 3 ~ellqcf~qTlda--da~~rt~AE~~Lk~l-------eKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~ 73 (970)
T COG5656 3 EELLQCFLQTLDA--DAGKRTIAEAMLKDL-------EKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKR 73 (970)
T ss_pred HHHHHHHHHHhcc--CcchhhHHHHHHHHh-------hcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcc
Confidence 4566777777774 677777665555433 35688999998877654 5667766665554 3433221100
Q ss_pred H--------H-hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHH
Q 002400 179 I--------A-HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQ 249 (927)
Q Consensus 179 ~--------~-~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~ 249 (927)
. + .-..+++-++..+..++...| .++.+....+ - ++ +...++.+ +.+....++.+++.....
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~sp~~tr-~~l~ail~~I-~---se---D~ps~~wg-l~p~~~nll~s~ea~~vy 144 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLYSPEVTR-TALNAILVNI-F---SE---DKPSDLWG-LFPKAANLLRSSEANHVY 144 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHh-c---cc---cCchhhcc-cchHHHHhhcccchhHHH
Confidence 0 0 112233333333333233334 3444444443 1 11 11122333 444445555567777778
Q ss_pred HHHHHHHHHHccC-------cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH-------
Q 002400 250 EALELLIELAATE-------PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK------- 315 (927)
Q Consensus 250 ~a~~~l~~l~~~~-------~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~------- 315 (927)
.++.++.++++.. ...+.+....++|.+.++..+ ..+..|.+.-+.....|...-..|-.
T Consensus 145 ~gLlcl~elfkayRwk~ndeq~di~~li~alfpile~~g~n------l~s~~ny~s~e~l~LILk~fKsvcy~~LP~~ls 218 (970)
T COG5656 145 TGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGN------LESQGNYGSVETLMLILKSFKSVCYYSLPDFLS 218 (970)
T ss_pred HHHHHHHHHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhc------cccCCchhHHHHHHHHHHHHHHHHHhhCCHHHc
Confidence 8888888887643 234455556666766654432 11124454444444444422222211
Q ss_pred ---HHHhhHHHHHHHHHhccC----CCCHHHHHH---------HHHHHHHhHhhhchhH-------HHHhHhhHHHHHHH
Q 002400 316 ---VMIKNLDQVVSMVLNSFQ----DPHPRVRWA---------AINAIGQLSTDLGPEL-------QTQFHHRLLPALVG 372 (927)
Q Consensus 316 ---~~~~~l~~l~~~l~~~l~----d~~~~vr~~---------a~~~l~~~~~~~~~~~-------~~~~~~~il~~ll~ 372 (927)
.+...+.-.+..+.+-+. .-+|.||.. |+.-+.++.....+.. ....+.+++|.+++
T Consensus 219 a~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~ 298 (970)
T COG5656 219 AIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILA 298 (970)
T ss_pred cchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 111222211222211111 113333332 2233333332221110 01112224444443
Q ss_pred ----hccCC--CCchHHHHHHHHHHHhHhcCCC-----ccccCchHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 373 ----AMDDF--QNPRVQAHAASAVLNFSENCTP-----DILTPYLDGIVSKLLV-LLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 373 ----~l~~~--~~~~v~~~a~~al~~l~~~~~~-----~~~~~~l~~l~~~L~~-~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
.+... +.--......+.+..|.+.|-. ..++||++-+++.++- ++.-.... -+...
T Consensus 299 tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~------------eElfE 366 (970)
T COG5656 299 TFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEE------------EELFE 366 (970)
T ss_pred HHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhh------------HHHHh
Confidence 33221 1222456677888888877643 2467788777765533 33222111 01112
Q ss_pred hhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCc-chHHHH
Q 002400 441 GQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDP-TTSYML 519 (927)
Q Consensus 441 ~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~ 519 (927)
.+=.+|...-+.+- .+...+ ++ +|..++-.++..-+++.|.+.+.-+.+.+-+-..+..+.+.+ ..+.++
T Consensus 367 nDp~eyirry~df~----d~g~sp---dl--aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egal 437 (970)
T COG5656 367 NDPDEYIRRYYDFF----DNGLSP---DL--AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGAL 437 (970)
T ss_pred cCHHHHHHHhcchh----cCCCCh---hH--HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHH
Confidence 22223443333322 221111 12 345566555555554445554443333332211111111222 455677
Q ss_pred HHHHHHHHHhc--cccccchh-hhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHH
Q 002400 520 QAWARLCKCLG--QEFIPYMS-VVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATAC 596 (927)
Q Consensus 520 ~~~~~l~~~~~--~~~~~~l~-~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~ 596 (927)
+.++.+..-+. ..+..-+. -+++.++..++.+- +. -|..||
T Consensus 438 r~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~y----------------------------------gf--L~Srac 481 (970)
T COG5656 438 RLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNY----------------------------------GF--LKSRAC 481 (970)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcc----------------------------------cc--hHHHHH
Confidence 77777665221 11221111 12333333332211 11 246788
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 002400 597 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPAL 676 (927)
Q Consensus 597 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 676 (927)
++++.+....+.. ...-+..+....++.+ .+-.|+-.|+.++..++..-.. .+.+...+...+..+
T Consensus 482 e~is~~eeDfkd~--~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~-----------h~k~sahVp~tmekL 547 (970)
T COG5656 482 EFISTIEEDFKDN--GILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQS-----------HEKFSAHVPETMEKL 547 (970)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhh-----------hHHHHhhhhHHHHHH
Confidence 8888874443331 1244556666677766 3778899999999888765321 112333333344443
Q ss_pred HHHHccCChHHHHHHHHHHHHHhhc---------------------------C---CCCChhhHHHH-HHHHHHHHHH--
Q 002400 677 VEALHKEPEIDICASMLDALNESIQ---------------------------G---KDKTAEERRIA-ICIFDDVMEH-- 723 (927)
Q Consensus 677 l~~l~~e~d~~v~~~~l~~l~~~~~---------------------------~---~~~~~~~r~~a-~~~l~~l~~~-- 723 (927)
+. +.++-+.++...+++.+-+-+. . .+....+++.| .++|..+...
T Consensus 548 Ls-LSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 548 LS-LSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HH-hcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 32 3344444444444433322221 1 12233345543 4444433332
Q ss_pred -h--hhhhhhhHH-hHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHH
Q 002400 724 -C--REAALKYYD-TYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYD 799 (927)
Q Consensus 724 -~--~~~~~~~~~-~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~ 799 (927)
+ .+.+..++. .+.|.+--.+.+.-.+.-+.|+..+.-..-... .+.|...++++.+.+++.++.. ...-+
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk-eI~pimwgi~Ell~~~l~~~~t-----~~y~e 700 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK-EIEPIMWGIFELLLNLLIDEIT-----AVYSE 700 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-HhhhhhhHHHHHHHhcccccch-----hhhHH
Confidence 2 223334433 455555445555555666666655544333222 3457788889988888877642 13445
Q ss_pred HHHHHHHHHHhhcCCCCC----HhhHHHHHH-hcCCCCCcH-HHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHH
Q 002400 800 NAVSALGKICQFHRDSID----AAQVVPAWL-SCLPLKGDL-IEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAE 873 (927)
Q Consensus 800 na~~al~~l~~~~~~~~~----~~~~l~~~l-~~Lp~~~d~-~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 873 (927)
.+.-++..++.+....+. ...++-.+. ..+....+. +....+.+.+..++-+.++..+. +++|-...+..+
T Consensus 701 e~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~---qy~plfi~vags 777 (970)
T COG5656 701 EVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLS---QYLPLFISVAGS 777 (970)
T ss_pred HHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHH---hhhHHHHHHHhh
Confidence 677888889988766552 222222222 233332221 23455666666666566554444 256655555555
Q ss_pred Hhc
Q 002400 874 VLC 876 (927)
Q Consensus 874 ~l~ 876 (927)
.+.
T Consensus 778 ~l~ 780 (970)
T COG5656 778 GLK 780 (970)
T ss_pred hhh
Confidence 554
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.052 Score=60.10 Aligned_cols=374 Identities=17% Similarity=0.210 Sum_probs=198.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHhc---CCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 24 TLISNLMSSSNEHRSHAEVLLSH-LRQSHPDAFALNLSRMLSS---SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 24 ~~L~~~~s~d~~~r~~Ae~~l~~-~~~~~p~~~~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
++-+.+.++|.+.+-.|-+.+-. +-+ -+.+-..+..|+.- +.+-+ ||+.+-.+ |+-++.-
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mln--Ge~~p~Llm~IiRfvlps~~~e--------lKKLly~y------wE~vPKt 87 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLN--GEDLPSLLMTIIRFVLPSRNHE--------LKKLLYYY------WELVPKT 87 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHc--CCCchHHHHHHhheeeccCchH--------HHHHHHHH------HHHcccc
Confidence 44456667777777777765433 333 23344455556553 44444 44444444 6543321
Q ss_pred H-----HH-H--HHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 002400 100 T-----QA-N--LKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMS 171 (927)
Q Consensus 100 ~-----~~-~--ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~ 171 (927)
. ++ . +-+.+=.-|.+ +|..||-..-..+.++-.. .-...++|.+.+|+.+...-+|+.|+.++..+.
T Consensus 88 ~~dgkl~~EMILvcna~RkDLQH-PNEyiRG~TLRFLckLkE~----ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 88 DSDGKLLHEMILVCNAYRKDLQH-PNEYIRGSTLRFLCKLKEP----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred CCCcccHHHHHHHHHHHhhhccC-chHhhcchhhhhhhhcCcH----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 1 11 1 11222223343 5888998877777665322 234568888889999999999999999999888
Q ss_pred hhhHHHHHHhHHHHHHHHHhhhCCCCHHHHH------------HHHHHHHHHHHhhCCCchhH--HhHHhhH--------
Q 002400 172 QFVSEVLIAHGDTLHEVFSKFLGSNNFDLRI------------AALEATVNFIMNCLPSLGEK--ERFLDLL-------- 229 (927)
Q Consensus 172 ~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~------------~a~~~l~~l~~~~~~~~~~~--~~~~~~~-------- 229 (927)
... +++.+..+.++.-++..=+|+ .-+. .|++.+...+ ..+++-++. -.+-+++
T Consensus 163 k~~-~~L~pDapeLi~~fL~~e~Dp--sCkRNAFi~L~~~D~ErAl~Yl~~~i-dqi~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 163 KNF-EHLIPDAPELIESFLLTEQDP--SCKRNAFLMLFTTDPERALNYLLSNI-DQIPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred hhh-hhhcCChHHHHHHHHHhccCc--hhHHHHHHHHHhcCHHHHHHHHHhhH-hhccCccHHHHHHHHHHHHHHHhcCH
Confidence 763 455556666666655443333 3332 3444444443 322211100 0000000
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc---------------------C
Q 002400 230 ---PLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAE---------------------A 285 (927)
Q Consensus 230 ---p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~---------------------~ 285 (927)
..+++.+..++.+.+..++.++...+..+. ..|..++.....++..+....++. .
T Consensus 239 ~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~ 317 (948)
T KOG1058|consen 239 AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQG 317 (948)
T ss_pred HHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHH
Confidence 111222223333333333222222221111 123333433333333332211110 1
Q ss_pred c---hhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc-------CCCCHHHHHHHHHHHHHhHhhhc
Q 002400 286 V---FPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-------QDPHPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 286 ~---i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l-------~d~~~~vr~~a~~~l~~~~~~~~ 355 (927)
+ +-..+++++..+|.-++...-.++.. ..+.+++.++.+.+ +|.+...|..-..++..++..++
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvss------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSS------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhh------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 1 11345677888887766654444443 33455666555444 34566789999999988887663
Q ss_pred hhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcC-CChhHHHHHHHHHHH
Q 002400 356 PELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQN-GKQMVQEGALTALAS 434 (927)
Q Consensus 356 ~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~-~~~~v~~~a~~al~~ 434 (927)
.+...++|.+++.+.| .++.........+...++..+. .-..++..++..+.. .+.++-..+++.+|.
T Consensus 392 -----~~aatvV~~ll~fisD-~N~~aas~vl~FvrE~iek~p~-----Lr~~ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 392 -----EVAATVVSLLLDFISD-SNEAAASDVLMFVREAIEKFPN-----LRASIIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred -----HHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHhhhhhcccccchhHHHHHHH
Confidence 5678999999999999 7776655555666666665541 123455555554432 234566778888888
Q ss_pred HHHHhh
Q 002400 435 VADSSQ 440 (927)
Q Consensus 435 l~~~~~ 440 (927)
.+....
T Consensus 461 Yce~~~ 466 (948)
T KOG1058|consen 461 YCEGLS 466 (948)
T ss_pred HHhhhH
Confidence 776554
No 125
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.96 E-value=0.0021 Score=64.66 Aligned_cols=243 Identities=18% Similarity=0.169 Sum_probs=158.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhhhhHHH-HH-HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHh
Q 002400 147 FIFQCLVTFNDKIQESALLILSRMSQFVSEV-LI-AHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKER 224 (927)
Q Consensus 147 ~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~-l~-~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 224 (927)
.|-..+.++++..|..|+.+|+.+.+.++.. +. ..+..++.++...+.| ...-..+++++..++ ..- . .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~-~~~-~-----~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALV-KMK-N-----F 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHH-hCc-C-----C
Confidence 3456778899999999999999999988754 32 3567788888888854 333444477777777 321 1 0
Q ss_pred HHhhHHHHHHHHHHHH--hcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHH
Q 002400 225 FLDLLPLMMRTLTEAL--NKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV 302 (927)
Q Consensus 225 ~~~~~p~ll~~l~~~l--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa 302 (927)
-......+++.+.+-. ++-....+..+++++..+.++....+...-..++..+++.++.+ .|++--.-+
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE---------kDPRnLl~~ 144 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE---------KDPRNLLLS 144 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC---------CCHHHHHHH
Confidence 0112333444443321 12234567788888888887755555555556666666555443 567666666
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhc
Q 002400 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSF--------QDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAM 374 (927)
Q Consensus 303 l~al~~i~~~~~~~~~~~l~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l 374 (927)
...+..+....+ +.++.+++++.+..++ +|+...-|..-...|...... . ..+.+..+|.+++.|
T Consensus 145 F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~----~~fa~~~~p~LleKL 217 (262)
T PF14500_consen 145 FKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-T----PLFAPFAFPLLLEKL 217 (262)
T ss_pred HHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-c----HhhHHHHHHHHHHHH
Confidence 666666666554 2456667777666543 244333343333333322221 1 246678999999999
Q ss_pred cCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHH
Q 002400 375 DDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLV 415 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~ 415 (927)
.+ ..+.++..+..+|...++..+.+.+.+|...+++.+-.
T Consensus 218 ~s-~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 218 DS-TSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred cC-CCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 99 89999999999999999999888888999998887743
No 126
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.037 Score=58.42 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=94.1
Q ss_pred CchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400 404 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA 483 (927)
Q Consensus 404 ~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 483 (927)
+.+..++..+..-..+++..+|..|+..|+.++..+++....|...++..+...+-+.. +.++.-.++.|+..+...
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~---~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL---NEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHh
Confidence 56777777777777888889999999999999999888888999999988888875533 356766777777776654
Q ss_pred hCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccc
Q 002400 484 VGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPY 536 (927)
Q Consensus 484 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 536 (927)
.......+|...+--.+.+++.. .++..|...+..|+.++...|.+...+
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~s---e~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDS---EDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHh---cChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 44355666665555555554442 456688888889999988877765543
No 127
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.084 Score=61.81 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=103.9
Q ss_pred hHHhHHHHHHHHccC----CChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHH
Q 002400 731 YYDTYLPFLLEACND----KHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALG 806 (927)
Q Consensus 731 ~~~~ll~~l~~~l~d----~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~ 806 (927)
.+..+.|.+...++. .+|+++.+|.-++|.+.--+. .|...-++.|..++.... +..+|-|++.++|
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp-----~p~IRsN~Vvalg 986 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSP-----SPRIRSNLVVALG 986 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCC-----Cceeeecchhecc
Confidence 677888888888853 579999999999998876533 567777888888887432 5679999999999
Q ss_pred HHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHH
Q 002400 807 KICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQT 886 (927)
Q Consensus 807 ~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 886 (927)
-+...+|..+ +.+-+.+...|.. ++...++.++..|..|+-+.--.+-| ++ .-.+.++. ++++++
T Consensus 987 Dlav~fpnli--e~~T~~Ly~rL~D-~~~~vRkta~lvlshLILndmiKVKG----ql----~eMA~cl~----D~~~~I 1051 (1251)
T KOG0414|consen 987 DLAVRFPNLI--EPWTEHLYRRLRD-ESPSVRKTALLVLSHLILNDMIKVKG----QL----SEMALCLE----DPNAEI 1051 (1251)
T ss_pred chhhhccccc--chhhHHHHHHhcC-ccHHHHHHHHHHHHHHHHhhhhHhcc----cH----HHHHHHhc----CCcHHH
Confidence 9999888764 5556667777754 56677899999999998553222222 22 33344453 456777
Q ss_pred HHHHHHHHHHHHhh
Q 002400 887 ASRMINLLRQLQQS 900 (927)
Q Consensus 887 ~~~~~~~l~~~~~~ 900 (927)
+.....+++.+.+.
T Consensus 1052 sdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSK 1065 (1251)
T ss_pred HHHHHHHHHHhhhc
Confidence 77777666666543
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.025 Score=64.38 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=100.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 22 FETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 22 l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
+-.++..+.+.|.+.++--.-+|..+.+.+|+..+..+-.+..+ ++++.+|.+|.-.+-..=. ++
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-------------~e 123 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-------------KE 123 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-------------HH
Confidence 45667777888999999999999999888998665555555555 7899999998776643221 22
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccc--hHHHHHHHhcCCChHHHHHHHHHHHHhhhh
Q 002400 100 TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPE--LIPFIFQCLVTFNDKIQESALLILSRMSQF 173 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~--ll~~l~~~l~s~~~~~r~~al~~l~~l~~~ 173 (927)
....+-..+.+.+.+. ++.||+.++.++.++.+.+- .-.++ +...+..++.+.+|.+...|+..|..+.+.
T Consensus 124 l~~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLGNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 3344555666666664 89999999999999987542 23333 344555667799999999999999998877
No 129
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.93 E-value=2.8e-05 Score=64.53 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=63.9
Q ss_pred CCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHH
Q 002400 292 AAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALV 371 (927)
Q Consensus 292 ~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll 371 (927)
++++|.+|..++.+|+.+. -+..++.+...++|+++.||.+|++++|.+.. +..++.+.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-----------~~~~~~L~ 68 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-----------PEAIPALI 68 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------HHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHH
Confidence 6889999999999999432 23678888888899999999999999998742 35778888
Q ss_pred HhccCCCCchHHHHHHHHHH
Q 002400 372 GAMDDFQNPRVQAHAASAVL 391 (927)
Q Consensus 372 ~~l~~~~~~~v~~~a~~al~ 391 (927)
+.+.+.++..||..|..+|+
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 88877456678999998874
No 130
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.93 E-value=0.0099 Score=61.83 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=144.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhh
Q 002400 630 HEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEE 709 (927)
Q Consensus 630 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~ 709 (927)
....|..+...+..++..- ..++++......++..+++.++... .+.
T Consensus 56 ~~~~Re~aL~~l~~~l~~~-----------~~~d~v~~~~~tL~~~~~k~lkkg~----------------------~~E 102 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSR-----------YLPDFVEDRRETLLDALLKSLKKGK----------------------SEE 102 (309)
T ss_pred CHHHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHhccCC----------------------HHH
Confidence 5788999999888887542 1245566667777777777776542 367
Q ss_pred HHHHHHHHHHHHHHhh--hhhhhhHHhHHHHHHHHccCC--ChhHHhhHhHHHHHHHhhcCCCcHHHH--HHHHHHHHHh
Q 002400 710 RRIAICIFDDVMEHCR--EAALKYYDTYLPFLLEACNDK--HPDVRQAAVYGIGVCAEFGGSVFKPLV--GEALSRLDFV 783 (927)
Q Consensus 710 r~~a~~~l~~l~~~~~--~~~~~~~~~ll~~l~~~l~d~--~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~il~~L~~~ 783 (927)
+..|..+++-++-.+| ......+..+.|.|.+.+.|. .+.+|..++.+||.++-.++.....+. ...++.+...
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~ 182 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLL 182 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Confidence 7888888998888866 666778899999999998875 457888999999999887665443332 2445533222
Q ss_pred --hc-CCC---CCCchhhhHHHHHHHHHHHHHhhcCCC-C--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCC
Q 002400 784 --IR-HPN---ALHSDNVMAYDNAVSALGKICQFHRDS-I--DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDG 854 (927)
Q Consensus 784 --l~-~~~---~~~~~~~~~~~na~~al~~l~~~~~~~-~--~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~ 854 (927)
.. +.+ ....++..+.-+|+.+.|-++...|.. + .+...+|.+..-|. ..|.+.+.++-+++.-+++....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~-s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 183 SILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD-SDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhc
Confidence 11 111 112234678888999999999776652 2 35667787777665 35888888999999888876653
Q ss_pred cccCCCCCChhHHHHHHHHHhc
Q 002400 855 EILGPNHQYLPKIVTIFAEVLC 876 (927)
Q Consensus 855 ~~~~~~~~~~~~i~~~~~~~l~ 876 (927)
.--...+.+.++++..+...-.
T Consensus 262 ~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 262 HEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred ccccccccCHHHHHHHHHHHHH
Confidence 2111123467778777777654
No 131
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.90 E-value=0.00053 Score=78.96 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHH
Q 002400 229 LPLMMRTLTEALNKGNESSAQEALELLIELAATEP-RFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALA 307 (927)
Q Consensus 229 ~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~ 307 (927)
++.+-..+..-+.+.+|..+.++++-+...++... .....+...+.. ++ .-...|.|..+-.-++.+|.
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~-~~---------ki~~kDaN~~v~~~aa~~l~ 320 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGI-LL---------KIRLKDANINVVMLAAQILE 320 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHH-HH---------HHhccCcchhHHHHHHHHHH
Confidence 34444455555667899999999998888887654 222223322222 22 12334678888888999999
Q ss_pred HHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHH
Q 002400 308 QIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAA 387 (927)
Q Consensus 308 ~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~ 387 (927)
.++.+......++...+.|.++..+.+..+.+|.++..++..++.. ..+..+.+.++..+.+ .+|..+..+.
T Consensus 321 ~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~-knp~~k~~~~ 392 (815)
T KOG1820|consen 321 LIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALKG-KNPQIKGECL 392 (815)
T ss_pred HHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcC-CChhhHHHHH
Confidence 9999998888889999999999999999999999999999998872 3456788899999999 9999999999
Q ss_pred HHHHHhHhcCCCc-cccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh-hHHhHHHHH
Q 002400 388 SAVLNFSENCTPD-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ-FQKYYDAVM 451 (927)
Q Consensus 388 ~al~~l~~~~~~~-~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~ 451 (927)
..+.......++. ...+-...+++.+....++.+..||.+++.+++.+..+.|+. +..|+..+-
T Consensus 393 ~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 393 LLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 9999999888732 233457789999999999999999999999999999999975 444444443
No 132
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.14 Score=62.88 Aligned_cols=297 Identities=16% Similarity=0.197 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC----CCHHHHHHHHH--HHHHHHHhhCCCchhHHhHHhhHHHH
Q 002400 159 IQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS----NNFDLRIAALE--ATVNFIMNCLPSLGEKERFLDLLPLM 232 (927)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~----~~~~vr~~a~~--~l~~l~~~~~~~~~~~~~~~~~~p~l 232 (927)
+-..++..++.++...+..... .++..+..++.. .-..|+..|.. ++..+. .++..... . ..+.|..
T Consensus 800 ~Idta~~lfg~vfp~v~~k~~~---~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~l-k~l~e~~~-~--~~lg~e~ 872 (2067)
T KOG1822|consen 800 LIDTAVSLFGSVFPHVNNKIRL---SILEHFPESIKQSKSARQQSVQVNAVTWQALLSAL-KYLAEFKG-A--TSLGPEE 872 (2067)
T ss_pred HHHHHHHHHHHhccCccHHHHH---HHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH-HHHHhccc-c--cccCHHH
Confidence 4455777777777766654322 222222222222 23346666555 555554 33321100 0 0122222
Q ss_pred HH-----HHHHHHhcCChhHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHH
Q 002400 233 MR-----TLTEALNKGNESSAQEALELLIELAAT--EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIA 305 (927)
Q Consensus 233 l~-----~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~a 305 (927)
+. .+...+...++..+..+-++|..++.. .+.++..+....+..+ -+..+.-.|-.-..+
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdkl-------------as~~d~i~R~ghsla 939 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKL-------------ASARDPITRTGHSLA 939 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH-------------HhcCCcHHHHHHHHH
Confidence 22 222333445666666667777666543 3445555555444433 123567777777888
Q ss_pred HHHHhhhchHHH-HhhHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc--h
Q 002400 306 LAQIAEGCSKVM-IKNLDQVVSMVLNSFQDPHP-RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP--R 381 (927)
Q Consensus 306 l~~i~~~~~~~~-~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~--~ 381 (927)
+|.+-+..+... ..++..-+..++..-+|+++ .|+.-++.++..+....+|-+ ..+....+..+...+-..+.. .
T Consensus 940 lg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~e 1018 (2067)
T KOG1822|consen 940 LGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVE 1018 (2067)
T ss_pred HHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhh
Confidence 998887655422 25666667777777788765 999999999999988777655 566677777777766542322 2
Q ss_pred HHHHHHHHHH------HhHhcCCCccccCch---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHh
Q 002400 382 VQAHAASAVL------NFSENCTPDILTPYL---------DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446 (927)
Q Consensus 382 v~~~a~~al~------~l~~~~~~~~~~~~l---------~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 446 (927)
|...--.++. .++...+++ +.|-. ...+-...-.+.+.++.++.+++.++..+.-..+. .-.
T Consensus 1019 v~q~~~R~~~~~~~~~alittlgpe-L~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n 1095 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPE-LGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVN 1095 (2067)
T ss_pred hhhhhccccccchhHHHHHHhcccc-cCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hcc
Confidence 3322223433 555555543 22221 12222222234566788999999999888755544 224
Q ss_pred HHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400 447 YDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA 483 (927)
Q Consensus 447 ~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 483 (927)
++.+++.+...+.. ....+|...+.|+..++..
T Consensus 1096 ~~~lV~~L~~~l~s----~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSS----SYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHHHHHHhcc----hhhhhhhhHHhhhhHHhHH
Confidence 56778888877654 3455777778887777643
No 133
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0017 Score=72.39 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=158.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHh
Q 002400 145 IPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKER 224 (927)
Q Consensus 145 l~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 224 (927)
+..-+..+.++....|-.|+..+..+++.-...-...-..++.++...+.|.++-|=..|++.+..++ +.+++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc-evy~e------ 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC-EVYPE------ 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH-Hhcch------
Confidence 44444555667778899999999999984422212234678999999999999999999999888888 65532
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHH
Q 002400 225 FLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLI 304 (927)
Q Consensus 225 ~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~ 304 (927)
.++|.+.+...+.-.....+.+..+-+++..++......+..+...++..++ ..+.+++-..|.+++.
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl----------~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFL----------SGVREPDHEFRASSLA 869 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHH----------HhcCCchHHHHHhHHH
Confidence 3555554433322111223334444477777777777788888888888777 4455677777889999
Q ss_pred HHHHHhhhchHHHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchhHHH---HhHhhHHHHHHHhccCCCCc
Q 002400 305 ALAQIAEGCSKVMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPELQT---QFHHRLLPALVGAMDDFQNP 380 (927)
Q Consensus 305 al~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~~~~il~~ll~~l~~~~~~ 380 (927)
.+|.++....-.....+.+++..++.. -.|.++.||++|...+..+....+.+... .+.-+....+.....+.++.
T Consensus 870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd 949 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD 949 (982)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999888755444445566666555543 35889999999999999888877654421 23334445555555543566
Q ss_pred hHHHHHHHHHHHhHhcCC
Q 002400 381 RVQAHAASAVLNFSENCT 398 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~ 398 (927)
.++..|+.++..+-..+.
T Consensus 950 ~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 950 GLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888877654443
No 134
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.85 E-value=0.0011 Score=66.26 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=105.1
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCc--cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH--HHHHh
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDW--PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE--VLIAH 181 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w--~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~--~l~~~ 181 (927)
+.|+..|....++.++..+..+++..+.+....+.+ -..++.+..++.++++.+|..|+.++..+...... .+..|
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 668888887679999999999999987755443333 34788889999999999999999999998876554 33445
Q ss_pred HHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc
Q 002400 182 GDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAA 260 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (927)
++.+..... .++ +..++.++++.|.++. .. ......+...+|.+ ..++.+++......++.++..+++
T Consensus 95 i~~Vc~~~~---s~~lns~~Q~agLrlL~nLt-v~---~~~~~~l~~~i~~l----l~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 95 IPQVCEETV---SSPLNSEVQLAGLRLLTNLT-VT---NDYHHMLANYIPDL----LSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHh---cCCCCCHHHHHHHHHHHccC-CC---cchhhhHHhhHHHH----HHHHHcCChHHHHHHHHHHHHhcc
Confidence 555444333 333 6789999999999986 21 11123344445544 455667888899999999999987
Q ss_pred cC
Q 002400 261 TE 262 (927)
Q Consensus 261 ~~ 262 (927)
++
T Consensus 164 np 165 (254)
T PF04826_consen 164 NP 165 (254)
T ss_pred CH
Confidence 63
No 135
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.84 E-value=0.009 Score=62.13 Aligned_cols=208 Identities=18% Similarity=0.179 Sum_probs=136.4
Q ss_pred CChhHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc--hHHHH
Q 002400 243 GNESSAQEALELLIELAAT--EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC--SKVMI 318 (927)
Q Consensus 243 ~~~~~~~~a~~~l~~l~~~--~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~--~~~~~ 318 (927)
.....+..+++.+..+... .+.++......++..+. ..++...-+.+..|+.+++-++-.. +....
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~----------k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALL----------KSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----------HHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 4466778888888777654 35667777777777776 4444444466667777777665543 24445
Q ss_pred hhHHHHHHHHHhccCCC--CHHHHHHHHHHHHHhHhhhchhHHH-HhHhhHHH----HHHHhccC-------CCCchHHH
Q 002400 319 KNLDQVVSMVLNSFQDP--HPRVRWAAINAIGQLSTDLGPELQT-QFHHRLLP----ALVGAMDD-------FQNPRVQA 384 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~il~----~ll~~l~~-------~~~~~v~~ 384 (927)
..+..+.|.+.+.+.|. ++.+|.+++.||+.++-..+.+... ...-..+. ......+. .+++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 66777888888888775 4678889998998776543332210 10113333 22211111 12357889
Q ss_pred HHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh---hh-HHhHHHHHHHHHHHHhc
Q 002400 385 HAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG---QF-QKYYDAVMPYLKAILVN 460 (927)
Q Consensus 385 ~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~---~~-~~~~~~i~~~L~~~l~~ 460 (927)
+|+.+++-+...++...+..++...++.|..+|++.+..||..|-.+|+-+.+.... +| .+..+.+...+..+-..
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 999999988888876556667788899999999999999999999999988776664 33 23445555555555443
No 136
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.80 E-value=0.00026 Score=66.00 Aligned_cols=143 Identities=21% Similarity=0.272 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHhhh-chHHHHhhHHHHHHHH------------HhccCCCCHHHHHHHHHHHHHhHhhhchhHH----
Q 002400 297 QKHHAVLIALAQIAEG-CSKVMIKNLDQVVSMV------------LNSFQDPHPRVRWAAINAIGQLSTDLGPELQ---- 359 (927)
Q Consensus 297 ~~r~aal~al~~i~~~-~~~~~~~~l~~l~~~l------------~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---- 359 (927)
++|.+|+.+|+.+++. .+..+..|...++|.- .-.+.|++++||.+|+.++..+.+...+.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 5799999999999998 4445556666555433 2346899999999999999998875432210
Q ss_pred ---------------HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC-chHHHHHHHHHHhcCCChh
Q 002400 360 ---------------TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP-YLDGIVSKLLVLLQNGKQM 423 (927)
Q Consensus 360 ---------------~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~-~l~~l~~~L~~~l~~~~~~ 423 (927)
...+.++=..|+..+....+..+....++++..++...+.+.+++ +++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 112333444456666664677888899999999999988766654 7788888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 002400 424 VQEGALTALASVADSS 439 (927)
Q Consensus 424 v~~~a~~al~~l~~~~ 439 (927)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988654
No 137
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.77 E-value=0.024 Score=61.95 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred cchhHHHHHHHHHHHHhhhchHHHHh-hHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHH
Q 002400 294 PEWQKHHAVLIALAQIAEGCSKVMIK-NLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALV 371 (927)
Q Consensus 294 ~~~~~r~aal~al~~i~~~~~~~~~~-~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll 371 (927)
.+...+.||+.++-.++......-.. .-..++..+++.+.||+..|..++.-++..+.-.+++.- ..+ -...+..+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHHH
Confidence 45678889999988887765442222 123567777888899999999999999999888877544 333 446888899
Q ss_pred HhccCCCCchHHHHHHHHHHHhHhcCCCccc-cCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 372 GAMDDFQNPRVQAHAASAVLNFSENCTPDIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 372 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
+.+.+ +.+.+|..+.|+|..+.-.+..... .++-.--.+.+..+.+++++.|+++++..+.++.....+
T Consensus 468 s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 468 SMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 99999 8999999999999999877764322 233333455666677899999999999999999755443
No 138
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.77 E-value=0.0067 Score=65.35 Aligned_cols=241 Identities=15% Similarity=0.011 Sum_probs=142.7
Q ss_pred cchHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch
Q 002400 142 PELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG 220 (927)
Q Consensus 142 ~~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~ 220 (927)
+..++.++..+. +.+..++..+...+...-. ...+..+...+.++++.||..+.++|+.+- .
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-~------ 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG-G------ 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-c------
Confidence 345666666663 5556666555544432211 113677778888888889999999887654 1
Q ss_pred hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHH
Q 002400 221 EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHH 300 (927)
Q Consensus 221 ~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~ 300 (927)
|.....+...+.+.++.++..+++.+...... ..+.+. ..+++++..+|.
T Consensus 116 ---------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L~--------------~~L~d~d~~Vra 165 (410)
T TIGR02270 116 ---------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPALE--------------AALTHEDALVRA 165 (410)
T ss_pred ---------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHHH--------------HHhcCCCHHHHH
Confidence 11223344444566776766666544331111 011222 445578899999
Q ss_pred HHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc
Q 002400 301 AVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP 380 (927)
Q Consensus 301 aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~ 380 (927)
+|+.++|.+... ..++.+...+.|.++.||.+|..+++.+.. + ..++.+.....+ +..
T Consensus 166 ~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~---~--------~A~~~l~~~~~~-~g~ 223 (410)
T TIGR02270 166 AALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS---R--------LAWGVCRRFQVL-EGG 223 (410)
T ss_pred HHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC---H--------hHHHHHHHHHhc-cCc
Confidence 999999987653 233445566899999999999999988754 1 223344443344 444
Q ss_pred hHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc
Q 002400 381 RVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 460 (927)
.++..+..++... +. +..+..|..++++.. ++..++.++|.+.. ...++.|...+.+
T Consensus 224 ~~~~~l~~~lal~----~~-------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d 280 (410)
T TIGR02270 224 PHRQRLLVLLAVA----GG-------PDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMRE 280 (410)
T ss_pred cHHHHHHHHHHhC----Cc-------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcC
Confidence 4544444444332 21 256677777777654 88888888887642 1345566665532
Q ss_pred ccCcchhhHHHHHHHHHHHH
Q 002400 461 ANDKSNRMLRAKSMECISLV 480 (927)
Q Consensus 461 ~~~~~~~~lr~~a~~~l~~l 480 (927)
..++..|-++++.|
T Consensus 281 ------~~~aR~A~eA~~~I 294 (410)
T TIGR02270 281 ------PPWARLAGEAFSLI 294 (410)
T ss_pred ------cHHHHHHHHHHHHh
Confidence 12666566665554
No 139
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.74 E-value=0.022 Score=71.96 Aligned_cols=305 Identities=15% Similarity=0.140 Sum_probs=195.6
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccC-HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCC--CCCcc
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA-PSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLP--DGDWP 142 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~-~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~--~~~w~ 142 (927)
+.+..++.+|.-.||+.-.+.-+ +..++ -..+..+-..+...+.+..+..||..+.+++..+...... +.-|.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle----~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLE----REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcc----hhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcH
Confidence 44677888898888887655400 11111 1234445566666677667889999999999977664332 35899
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHH----HhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCC
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLI----AHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLP 217 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~----~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~ 217 (927)
.++..+.....+.++.....|+.++..++...-..+. ..+..++..+.+..... +.++-..|+..+..+. ..+-
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~-~~La 1302 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA-TKLA 1302 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH-HHHH
Confidence 9999998888888888889999999988876433221 34555666665554433 5677778888877654 2220
Q ss_pred Cc-------------------------h------hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC----
Q 002400 218 SL-------------------------G------EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE---- 262 (927)
Q Consensus 218 ~~-------------------------~------~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---- 262 (927)
+. . .......+.=.++..+..+..+.+.+++..|++.+.++....
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 00 0 001111233334555555566778899999999888877542
Q ss_pred -cHHHHHHHHHHHHHHHHHhhcc----Cc-------hh---hhhCCcchhHHHHHHHHHHHHhhhchH---HHHhhHHHH
Q 002400 263 -PRFLRKQLVDVVGSMLQVAEAE----AV-------FP---GFLAAPEWQKHHAVLIALAQIAEGCSK---VMIKNLDQV 324 (927)
Q Consensus 263 -~~~~~~~l~~ll~~ll~~~~~~----~~-------i~---~~l~~~~~~~r~aal~al~~i~~~~~~---~~~~~l~~l 324 (927)
+.+....+..++-.++..+... .. +. +......|- .++...+|..+++-... .+...++.+
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~ 1461 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKV 1461 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444333210 00 00 000112364 67777777777765443 344567777
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 325 VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 325 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
+..+..++..+|..+-..+..|+.++....+..+....+..++..+.+.+..
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 7777788888899999999999999999888888777888888888777765
No 140
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.71 E-value=0.00017 Score=59.69 Aligned_cols=86 Identities=33% Similarity=0.524 Sum_probs=67.4
Q ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcccc
Q 002400 325 VSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILT 403 (927)
Q Consensus 325 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~ 403 (927)
+|.+++.+ +|+++.||..++++++++.. ..++|.++..++| +++.||..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 46677777 89999999999999995532 2568888899988 99999999999999773
Q ss_pred CchHHHHHHHHHHhcCC-ChhHHHHHHHHHH
Q 002400 404 PYLDGIVSKLLVLLQNG-KQMVQEGALTALA 433 (927)
Q Consensus 404 ~~l~~l~~~L~~~l~~~-~~~v~~~a~~al~ 433 (927)
-+..++.|...+.+. +..+|..+..+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 244566777777665 4567999988875
No 141
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.068 Score=53.10 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH----HHH-hHHHHHHHHHhhhCCCCH
Q 002400 124 ICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV----LIA-HGDTLHEVFSKFLGSNNF 198 (927)
Q Consensus 124 ~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~----l~~-~~~~l~~~l~~~l~~~~~ 198 (927)
...++..+.+..++..--|++.|.|...+..++..++..++..++.+.+..... +.. .-..+++.++.++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 445566666665665567899999998888899999999999999999876521 111 225689999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002400 199 DLRIAALEATVNFI 212 (927)
Q Consensus 199 ~vr~~a~~~l~~l~ 212 (927)
+|-.+|.+.+..+.
T Consensus 143 eVAkAAiesikria 156 (524)
T KOG4413|consen 143 EVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.15 Score=57.00 Aligned_cols=347 Identities=13% Similarity=0.133 Sum_probs=154.5
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV 174 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~ 174 (927)
+++..+-..+-=.+...+.+ .+...|+..-.+|..+....- .---....+..-.++.++..|-.|+..|-.+.+.-
T Consensus 56 ~~~~~eate~ff~~tKlfQs-kd~~LRr~vYl~Ikels~ise---dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~ 131 (865)
T KOG1078|consen 56 HFGETEATELFFAITKLFQS-KDVSLRRMVYLAIKELSKISE---DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT 131 (865)
T ss_pred ccchhhHHHHHHHHHHHHhh-cCHHHHHHHHHHHhhccccch---hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc
Confidence 45555555555555566665 488888877766765543321 11112333333344566778888888888777542
Q ss_pred HHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002400 175 SEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALEL 254 (927)
Q Consensus 175 ~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~ 254 (927)
. ...+=.++.+++-|.++-++.+|+-.-..++ ..- ...+..+.+.++....+.+.-+.+.++.+
T Consensus 132 m------~~~iery~kqaivd~~~avSsaalvss~hll-~~~---------~~~vkrw~neiqea~~s~~~m~QyHalgl 195 (865)
T KOG1078|consen 132 M------LQAIERYMKQAIVDKNPAVSSAALVSSYHLL-PIS---------FDVVKRWANEVQEAVNSDNIMVQYHALGL 195 (865)
T ss_pred h------hHHHHHHHHhHeeccccccchHHHHHHhhhh-ccc---------HHHHHHHHHhhhhccCcHHHHHHHHHHHH
Confidence 1 1223344555666766667666654444444 110 01122222222222222222223444444
Q ss_pred HHHHHccCcHHHHHHHHHHHH--------HHH------HHhhcc--------CchhhhhCCcchhHHHHHHHHHHHHhhh
Q 002400 255 LIELAATEPRFLRKQLVDVVG--------SML------QVAEAE--------AVFPGFLAAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 255 l~~l~~~~~~~~~~~l~~ll~--------~ll------~~~~~~--------~~i~~~l~~~~~~~r~aal~al~~i~~~ 312 (927)
+..+-+++.-.+.+.+..+.+ .++ ..+.++ +++..++.+..-.+-.-|..++..+...
T Consensus 196 Lyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~ 275 (865)
T KOG1078|consen 196 LYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT 275 (865)
T ss_pred HHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc
Confidence 444433221111111111110 000 000000 3344444444433333444444444333
Q ss_pred chHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHH
Q 002400 313 CSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392 (927)
Q Consensus 313 ~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~ 392 (927)
.+.. +...+..+...+..+.+.+|.+|..+|.+++...+... ...=..+-..+.| .+..+.. .++..
T Consensus 276 ~~r~----l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-----~~cN~elE~lItd-~NrsIat---~AITt 342 (865)
T KOG1078|consen 276 NSRE----LAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-----TVCNLDLESLITD-SNRSIAT---LAITT 342 (865)
T ss_pred CHhh----cchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-----cccchhHHhhhcc-cccchhH---HHHHH
Confidence 3322 22244555556667777777777777777765432211 0111112223333 3333322 33333
Q ss_pred hHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHH
Q 002400 393 FSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAK 472 (927)
Q Consensus 393 l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~ 472 (927)
+.+.... .....++..+.....+-+..-+--+..++.++....+. --..++++|...+.+. .....+..
T Consensus 343 LLKTG~e----~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~----k~~~~m~FL~~~Lr~e---Gg~e~K~a 411 (865)
T KOG1078|consen 343 LLKTGTE----SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR----KHTVMMNFLSNMLREE---GGFEFKRA 411 (865)
T ss_pred HHHhcch----hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH----HHHHHHHHHHHHHHhc---cCchHHHH
Confidence 3333221 12334444444444433333334445555555543332 2234455666665541 23456666
Q ss_pred HHHHHHHHHHhhC
Q 002400 473 SMECISLVGMAVG 485 (927)
Q Consensus 473 a~~~l~~l~~~~~ 485 (927)
.++++..++....
T Consensus 412 ivd~Ii~iie~~p 424 (865)
T KOG1078|consen 412 IVDAIIDIIEENP 424 (865)
T ss_pred HHHHHHHHHHhCc
Confidence 7777777766544
No 143
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.69 E-value=0.00072 Score=62.37 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=98.1
Q ss_pred HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHH---HHHh
Q 002400 363 HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADSS 439 (927)
Q Consensus 363 ~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l---~~~~ 439 (927)
+..++|.+.+.+.. ....-+--|...+..+++..+.+.+.|.+++++..+..+|++.++.+...++.+|..+ ...+
T Consensus 36 y~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45789999999988 6666677777788888877445667899999999999999999999999999999999 7888
Q ss_pred hhhhHHhHHHHHHHHHHHHhccc---C----cchhhHHHHHHHHHHHHHHhhCcchh
Q 002400 440 QGQFQKYYDAVMPYLKAILVNAN---D----KSNRMLRAKSMECISLVGMAVGKDKF 489 (927)
Q Consensus 440 ~~~~~~~~~~i~~~L~~~l~~~~---~----~~~~~lr~~a~~~l~~l~~~~~~~~~ 489 (927)
|+.+.||+.+++|.+.-...... | .....++...-+++..+-+..|++.|
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 99999999999999886544321 0 12344555566677777777675433
No 144
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00072 Score=66.48 Aligned_cols=142 Identities=19% Similarity=0.275 Sum_probs=116.5
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ 369 (927)
.+.+.+|.....++..+..+++..++.+.+.+..++-.+++.++++...|-.+||.+++.+.+.+...+ ...++..+..
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELDDLVTQ 174 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445789999999999999999999998999999999999999999999999999999999999887766 3456666666
Q ss_pred HHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 370 LVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 370 ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
|+..-.. .+..||+.|-.+|..++....+ ..+++.|...+.+.++.++..+..+....+...|
T Consensus 175 Ll~ka~~-dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 175 LLHKASQ-DNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHhhhcc-cchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 6665555 6789999999999999887764 3456677777788888888877766666555444
No 145
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.66 E-value=0.045 Score=58.73 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 20 AHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 20 ~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
..+..+++.+.+++..+|..|...+..+.. .. .+..+...+. +.++.+|..|+..|.+.-...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--~~-av~~l~~~l~-d~~~~vr~~a~~aLg~~~~~~------------- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--EE-AVPLLRELLS-DEDPRVRDAAADALGELGDPE------------- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--HH-HHHHHHHHhc-CCCHHHHHHHHHHHHccCChh-------------
Confidence 345556666666666677777766665544 22 4455555554 455567777766554332221
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCCh------------HHHHHHHHHH
Q 002400 100 TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFND------------KIQESALLIL 167 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~------------~~r~~al~~l 167 (927)
-...++..+..+.+..+|..++.+++.+. ++..+..++..+++... .+|..+...+
T Consensus 106 ----a~~~li~~l~~d~~~~vR~~aa~aL~~~~--------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 106 ----AVPPLVELLENDENEGVRAAAARALGKLG--------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred ----HHHHHHHHHHcCCcHhHHHHHHHHHHhcC--------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 22334455553346677777666666542 23334455555544331 2233333333
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 168 SRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 168 ~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+.+.+ +...+.+...+.++...||..|..+++.+.
T Consensus 174 ~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 174 GELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred HHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 32222 234445555566666666766666666665
No 146
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.65 E-value=0.0095 Score=63.96 Aligned_cols=251 Identities=21% Similarity=0.234 Sum_probs=155.8
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHH
Q 002400 104 LKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGD 183 (927)
Q Consensus 104 ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~ 183 (927)
.-..+++.+.++ +..+|..++..++.+.. .+.++.+...+.+.++.+|..+..+|+.+-..
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---------- 104 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGDP---------- 104 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh----------
Confidence 335567777776 88999999888765432 56899999999999999999999988876532
Q ss_pred HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHh--------cCChhHHHHHHHH
Q 002400 184 TLHEVFSKFLG-SNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALN--------KGNESSAQEALEL 254 (927)
Q Consensus 184 ~l~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~--------~~~~~~~~~a~~~ 254 (927)
..++.+...+. |++..||..+..+++.+- . . .. ++.+++.+..-.. .....++..+.+.
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~-~----~---~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLG-D----E---RA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-c----h---hh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 23444445555 789999999999999876 2 1 11 2333333321000 0000122222222
Q ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCC
Q 002400 255 LIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQD 334 (927)
Q Consensus 255 l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d 334 (927)
+..+.. +... +.+.+.+.+.+..+|.++..+|+.+.... ..+.+.+...+.|
T Consensus 173 l~~~~~----------~~~~----------~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~ 224 (335)
T COG1413 173 LGELGD----------PEAI----------PLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD 224 (335)
T ss_pred HHHcCC----------hhhh----------HHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC
Confidence 222111 1111 22335566777899999999999887643 4566778888999
Q ss_pred CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHH
Q 002400 335 PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLL 414 (927)
Q Consensus 335 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 414 (927)
+++.||.+++..+|.+.. ....+.+...+.+ .++.++..+..++. .. ........+.
T Consensus 225 ~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~-------~~~~~~~~l~ 281 (335)
T COG1413 225 ESLEVRKAALLALGEIGD-----------EEAVDALAKALED-EDVILALLAAAALG----AL-------DLAEAALPLL 281 (335)
T ss_pred CCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------CchhhHHHHH
Confidence 999999999999987643 2445666677777 67777666665544 11 1112223344
Q ss_pred HHhcCCChhHHHHHHHHHHHHH
Q 002400 415 VLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 415 ~~l~~~~~~v~~~a~~al~~l~ 436 (927)
..+.+....++..+..+++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 282 LLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred HHhhcchhhHHHHHHHHHHhhc
Confidence 4445666666666655555554
No 147
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.64 E-value=0.041 Score=59.10 Aligned_cols=353 Identities=14% Similarity=0.141 Sum_probs=192.7
Q ss_pred ChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 002400 51 HPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSE 130 (927)
Q Consensus 51 ~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ 130 (927)
+.+.++..++.++.....+++.+..-+++-..+...+.....+..... .....-..++..|..+ +..+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~-~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDAL-LKKKTWEPFFNLLNRQ-DQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhh-ccccchHHHHHHHcCC-chhHHHHHHHHHHH
Confidence 334688889999888888999999888888887654211111111100 0112234455666665 88899999999999
Q ss_pred HHhccCCCCCccchH----HHHHHHhcCC-ChHHHHHHHHHHHHhhhhh--HHHHHHhHHHHHHHHHhhhCCC--CHHHH
Q 002400 131 LAASVLPDGDWPELI----PFIFQCLVTF-NDKIQESALLILSRMSQFV--SEVLIAHGDTLHEVFSKFLGSN--NFDLR 201 (927)
Q Consensus 131 ia~~~~~~~~w~~ll----~~l~~~l~s~-~~~~r~~al~~l~~l~~~~--~~~l~~~~~~l~~~l~~~l~~~--~~~vr 201 (927)
++..... ..-...+ +.+...+.++ +...+..|+.++..+...- ...|.. ...++.+...++.. +.+..
T Consensus 128 l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 9875432 2222233 3444444443 4566778888888876442 222221 11344455544432 56788
Q ss_pred HHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc------HHHHHHHH-H
Q 002400 202 IAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEP------RFLRKQLV-D 272 (927)
Q Consensus 202 ~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~------~~~~~~l~-~ 272 (927)
+.++-|+..+. |+.. ....+ ..++|.+++.+... ..|.+.+-++.++.++.+... .+....+. .
T Consensus 205 Y~~ll~lWlLS---F~~~-~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~ 277 (429)
T cd00256 205 YQSIFCIWLLT---FNPH-AAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK 277 (429)
T ss_pred HHHHHHHHHHh---ccHH-HHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence 88887766654 3211 11112 35677777776653 357788888989988886421 11111111 1
Q ss_pred HHHHHHHHhhccCchhhhhCCcchhHH--HHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 273 VVGSMLQVAEAEAVFPGFLAAPEWQKH--HAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 273 ll~~ll~~~~~~~~i~~~l~~~~~~~r--~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
+. .++ +.++...|..- ...+..|....+..-+. ...+++...-+..+.-+-+|.-+...+|.=..
T Consensus 278 l~-~~l----------~~L~~rk~~DedL~edl~~L~e~L~~~~k~-ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~- 344 (429)
T cd00256 278 VL-KTL----------QSLEQRKYDDEDLTDDLKFLTEELKNSVQD-LSSFDEYKSELRSGRLHWSPVHKSEKFWRENA- 344 (429)
T ss_pred hH-HHH----------HHHhcCCCCcHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHhcCCccCCCCCCCchHHHHHH-
Confidence 11 122 22223333211 12233333222221111 11234444444444323344444444443221
Q ss_pred HhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchH--HHHHHHHHHhcCCChhHHHHH
Q 002400 351 STDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLLQNGKQMVQEGA 428 (927)
Q Consensus 351 ~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~--~l~~~L~~~l~~~~~~v~~~a 428 (927)
. .+ .+.--.++..|.+.+..+.++.+..-||.=++.|++..+... ..+. +.=..++.++++.++.||.+|
T Consensus 345 -~----kf-~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr--~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 345 -D----RL-NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGK--DVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred -H----HH-HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHH--HHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 0 11 111135677777777543578888889999999998875321 1111 134567888899999999999
Q ss_pred HHHHHHHH
Q 002400 429 LTALASVA 436 (927)
Q Consensus 429 ~~al~~l~ 436 (927)
+.|++.+.
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 99998874
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.63 E-value=0.019 Score=57.91 Aligned_cols=242 Identities=14% Similarity=0.189 Sum_probs=157.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHccCc-HHH-HHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhh
Q 002400 235 TLTEALNKGNESSAQEALELLIELAATEP-RFL-RKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 235 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~-~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~ 312 (927)
.+...+.++|+..+..++.++.++.+.-| ..+ +..+..++.+.. ..+ .+|..-..++.++.++...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~----------~rl--~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFC----------SRL--DDHACVQPALKGLLALVKM 70 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHH----------HHh--ccHhhHHHHHHHHHHHHhC
Confidence 45566778889999999999999887654 323 334455555544 333 3455555567777777732
Q ss_pred chHHHHhhHHHHHHHHHhccCC--CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHH
Q 002400 313 CSKVMIKNLDQVVSMVLNSFQD--PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAV 390 (927)
Q Consensus 313 ~~~~~~~~l~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al 390 (927)
...-......++..+.....- -....|..+...+..+.+...... ...-..++..+++.++..++|+--..++..+
T Consensus 71 -~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~ 148 (262)
T PF14500_consen 71 -KNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLL 148 (262)
T ss_pred -cCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 221223355566666654433 345679999999999888765544 4556678888888888767899888888888
Q ss_pred HHhHhcCCCccccCchHHHHHHHHHHh----cCC--C--hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc
Q 002400 391 LNFSENCTPDILTPYLDGIVSKLLVLL----QNG--K--QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNAN 462 (927)
Q Consensus 391 ~~l~~~~~~~~~~~~l~~l~~~L~~~l----~~~--~--~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~ 462 (927)
..+....+ +.++.+.+.+.+.-.+ ..+ + .-.++..-.++.....+ .+ .|.+..+|.|.+.+..
T Consensus 149 ~~i~~~~~---~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~---~fa~~~~p~LleKL~s-- 219 (262)
T PF14500_consen 149 KVILQEFD---ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TP---LFAPFAFPLLLEKLDS-- 219 (262)
T ss_pred HHHHHhcc---cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cH---hhHHHHHHHHHHHHcC--
Confidence 88887775 3567777776665543 111 1 11233333333332221 12 2455678888888765
Q ss_pred CcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHH
Q 002400 463 DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 501 (927)
Q Consensus 463 ~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 501 (927)
.....|..+++++...+...|...+.+|...+-+.+.
T Consensus 220 --~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 220 --TSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred --CCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3445888899999999988887778888777766554
No 149
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.62 E-value=0.53 Score=61.25 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHH----HHHHhcCCChHHHHHHHHHHHHhhhhhH
Q 002400 100 TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPF----IFQCLVTFNDKIQESALLILSRMSQFVS 175 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~----l~~~l~s~~~~~r~~al~~l~~l~~~~~ 175 (927)
.-....+.|...+.+- +..+-...+..++.++... ...-++++.+ +++.+++.....|..|...+..+....|
T Consensus 90 ~~s~~~n~l~~l~~~~-~~~~~~~a~~~~~l~~~~~--~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P 166 (2341)
T KOG0891|consen 90 NISRLANYLRYLLPSN-DVEVMELAAKSLGLLAAPG--KTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVP 166 (2341)
T ss_pred hhHhHHHHHHHhhccC-ChHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCc
Confidence 3344556666666654 5556666666666665432 1233455554 4444444455668889999999999999
Q ss_pred HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 002400 176 EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 216 (927)
..+.++++.++..+.....++++.+|..|+.++.... ...
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~-~~~ 206 (2341)
T KOG0891|consen 167 TFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVL-SSL 206 (2341)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHH-hhh
Confidence 9999999999999999999999999999999998876 443
No 150
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.54 E-value=0.22 Score=54.84 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=81.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC--------CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDG--------DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV 177 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~--------~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 177 (927)
..+...|.++ ....|..+.++.+.+..+...++ +...++..+.+.+++..|-.|..|+..+..+++....
T Consensus 302 ~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk- 379 (1128)
T COG5098 302 EHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK- 379 (1128)
T ss_pred HHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-
Confidence 5566777777 88899999999998877654333 3455777777888899999999999999999875422
Q ss_pred HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 178 LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+...-..+......+++|.+..||..|++.+..++
T Consensus 380 ~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 22233567888889999999999999999998876
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.0065 Score=69.31 Aligned_cols=223 Identities=18% Similarity=0.249 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHhhCCCchhHHh----HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 002400 200 LRIAALEATVNFIMNCLPSLGEKER----FLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVG 275 (927)
Q Consensus 200 vr~~a~~~l~~l~~~~~~~~~~~~~----~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~ 275 (927)
-|..|+..|+.|+ . -+.+.. --.++|.+++.|+ +.-.+.+-.-.=+|..|...++.-- ..++.
T Consensus 486 HRlRAL~LL~RFL-D----lGpWAV~LaLsVGIFPYVLKLLQ----S~a~ELrpiLVFIWAKILAvD~SCQ----~dLvK 552 (1387)
T KOG1517|consen 486 HRLRALVLLARFL-D----LGPWAVDLALSVGIFPYVLKLLQ----SSARELRPILVFIWAKILAVDPSCQ----ADLVK 552 (1387)
T ss_pred HHHHHHHHHHHHh-c----cchhhhhhhhccchHHHHHHHhc----cchHhhhhhHHHHHHHHHhcCchhH----HHHHh
Confidence 4778888888887 2 222222 2245566666554 3333333333334555554332211 11111
Q ss_pred HHHHHhhccCchhhhhCC-c--chhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCC-CHHHHHHHHHHHHHh
Q 002400 276 SMLQVAEAEAVFPGFLAA-P--EWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDP-HPRVRWAAINAIGQL 350 (927)
Q Consensus 276 ~ll~~~~~~~~i~~~l~~-~--~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~-~~~vr~~a~~~l~~~ 350 (927)
- ... .++.+.+.+ + +.+.|-.|.+.|+.+..+.+-.-+..+. .++..++..|+|+ +|..|.=.|.|||++
T Consensus 553 e----~g~-~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 553 E----NGY-KYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred c----cCc-eeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 0 000 222233333 2 2578888999999999987654444443 6788889999994 799999999999999
Q ss_pred HhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc----------ccc-----CchHHHH----H
Q 002400 351 STDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD----------ILT-----PYLDGIV----S 411 (927)
Q Consensus 351 ~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~----------~~~-----~~l~~l~----~ 411 (927)
=+++...--.-.-...-..|+..+.| +.++||.+|..||+.|+.+...+ .+. --.+.++ .
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 87664321112233455667788888 99999999999999999864211 000 1122222 2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 412 KLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 412 ~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
.++..+++.++-+|.+...+++.++.....
T Consensus 707 ~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 707 SLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 567777888888988888888777654443
No 152
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.005 Score=60.77 Aligned_cols=142 Identities=22% Similarity=0.261 Sum_probs=113.5
Q ss_pred HHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHH
Q 002400 239 ALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMI 318 (927)
Q Consensus 239 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~ 318 (927)
.+.+.||.....++..+..+.+..+..+.+.+..++..+. +.+++..-.+-.+|+.+++.+.....+.+.
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vv----------kslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVV----------KSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999888888888887777666 444556677888999999999988777666
Q ss_pred hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 319 KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
..++.++-.++..-.+.+..||..|-.+|..+..+..|. .+++.|+.++.. .++++|..++.++.+....++
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQH-SNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhh-hchhhhhhhhccccccceecc
Confidence 666766666666666778999999999999999877663 366777777777 889999999999888776664
No 153
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.47 E-value=0.02 Score=63.08 Aligned_cols=299 Identities=14% Similarity=0.155 Sum_probs=144.6
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS 195 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~ 195 (927)
.+...++-+++.|....++ +| .--.+.+..++.++.+.+..+|..|+.-|..+|...++ ++..+..+|.+.|+.
T Consensus 34 g~~k~K~Laaq~I~kffk~-FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH-FP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQT 107 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC--G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh-Ch-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhc
Confidence 4678889999999988764 34 34456788888899999999999999999999987655 577888899999998
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc-CcHHHH--HHHH-
Q 002400 196 NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT-EPRFLR--KQLV- 271 (927)
Q Consensus 196 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~--~~l~- 271 (927)
.++.....+-++|..++ .. +....+..++..+... .++++.++..++.++..-... .+.++. .-+.
T Consensus 108 dd~~E~~~v~~sL~~ll-~~----d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~ 177 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLL-KQ----DPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEE 177 (556)
T ss_dssp --HHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred ccHHHHHHHHHHHHHHH-hc----CcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence 88777777778888887 32 1122233333222211 246777888899888665432 122222 1111
Q ss_pred HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc--cC----CCCHHHHHHHHH
Q 002400 272 DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS--FQ----DPHPRVRWAAIN 345 (927)
Q Consensus 272 ~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~--l~----d~~~~vr~~a~~ 345 (927)
-++..+. ..+.|-.-..-...+..|+.+--.....-.....++++.+... |. -.++..-.....
T Consensus 178 ~i~~~ik----------kvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~ 247 (556)
T PF05918_consen 178 FIVDEIK----------KVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLIS 247 (556)
T ss_dssp HHHHHHH----------HHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHH
T ss_pred HHHHHHH----------HHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHH
Confidence 1222222 2222211111122222222222100000012233455544422 21 123333333344
Q ss_pred HHHHhHhhhchhH-HHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC--Ch
Q 002400 346 AIGQLSTDLGPEL-QTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG--KQ 422 (927)
Q Consensus 346 ~l~~~~~~~~~~~-~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~--~~ 422 (927)
|+..-.-.+.... ...++.-++..++..+++ =....+.....++..++..++.......++.+++.|...+-.. .+
T Consensus 248 C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~-l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~ 326 (556)
T PF05918_consen 248 CLRQALPFFSRGVSSSKFVNYMCEKVLPKLSD-LPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEP 326 (556)
T ss_dssp HHHHHGGG-BTTB--HHHHHHHHHHTCCCTT------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-------
T ss_pred HHHHhhHHhcCCCChHHHHHHHHHHhcCChhh-CChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCC
Confidence 4443222222211 134555555566666666 3456677788888888888775443445555555554443222 12
Q ss_pred ----hHHHHHHHHHHHHHHHhhh
Q 002400 423 ----MVQEGALTALASVADSSQG 441 (927)
Q Consensus 423 ----~v~~~a~~al~~l~~~~~~ 441 (927)
...+..+.++..++...++
T Consensus 327 ~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 327 KLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp ---HHHHHHHHHHHHHHHTT-TH
T ss_pred cccchHhhHHHHHHHHHhhhCcc
Confidence 3445555666666655443
No 154
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.079 Score=52.66 Aligned_cols=273 Identities=13% Similarity=0.127 Sum_probs=146.6
Q ss_pred ChHHHHH---HHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHH
Q 002400 156 NDKIQES---ALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLM 232 (927)
Q Consensus 156 ~~~~r~~---al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~l 232 (927)
+.++|+. +..||..+....... ...+++.+.+..++..++..|+.-+++.++.++ +..+.........-.-..+
T Consensus 53 NenhrekttlcVscLERLfkakega--hlapnlmpdLQrGLiaddasVKiLackqigcil-EdcDtnaVseillvvNaei 129 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGA--HLAPNLMPDLQRGLIADDASVKILACKQIGCIL-EDCDTNAVSEILLVVNAEI 129 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccch--hhchhhhHHHHhcccCCcchhhhhhHhhhhHHH-hcCchhhHHHHHHHhhhhH
Confidence 4566776 556666655543221 235678889999999889999999999999999 6553221111111122346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhh
Q 002400 233 MRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~ 312 (927)
++.+..++...|.+++..+++.+..++.. ...+..+++.=+ .|+-.+..+-...+--.|.-.+..+-.+..-
T Consensus 130 lklildcIggeddeVAkAAiesikrialf-----paaleaiFeSel---lDdlhlrnlaakcndiaRvRVleLIieifSi 201 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIALF-----PAALEAIFESEL---LDDLHLRNLAAKCNDIARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----HHHHHHhccccc---CChHHHhHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 66667777778899999999999888743 222233332100 0000000000011112222222222222222
Q ss_pred chHHHHhh-HHHHHHHHHhccCC-CCHHHHHHHHHHHHHhHhhh-chhHHHHhHhhHHHHHHHhccCC-CCchHHHHHHH
Q 002400 313 CSKVMIKN-LDQVVSMVLNSFQD-PHPRVRWAAINAIGQLSTDL-GPELQTQFHHRLLPALVGAMDDF-QNPRVQAHAAS 388 (927)
Q Consensus 313 ~~~~~~~~-l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~il~~ll~~l~~~-~~~~v~~~a~~ 388 (927)
.+...... -.-++..+...++- .+..|+..++.....+++.- +.++.. ...++..+...+... .+|.-+-++.-
T Consensus 202 SpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla--QeglIdlicnIIsGadsdPfekfralm 279 (524)
T KOG4413|consen 202 SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA--QEGLIDLICNIISGADSDPFEKFRALM 279 (524)
T ss_pred CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc--hhhHHHHHHHHhhCCCCCcHHHHHHHH
Confidence 22221111 12456666666655 56788888888887777632 222210 112334444433211 34555555555
Q ss_pred HHHHhHhcCC-----CccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 389 AVLNFSENCT-----PDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 389 al~~l~~~~~-----~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
.++.|..+.. ++.+-.-+...++..+..++..++...+.++.++|.+....+.
T Consensus 280 gfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 280 GFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG 337 (524)
T ss_pred HHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch
Confidence 5555543211 1112223445566667777888899999999999999866543
No 155
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.44 E-value=0.00018 Score=45.37 Aligned_cols=30 Identities=30% Similarity=0.644 Sum_probs=26.8
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhHhh
Q 002400 324 VVSMVLNSFQDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 324 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 353 (927)
++|.+++.++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
No 156
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.43 E-value=0.13 Score=57.96 Aligned_cols=141 Identities=11% Similarity=0.140 Sum_probs=100.2
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCC--CHHHHHHHHHHH---HHhHhhhchhHHHHhHhhHHHH
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDP--HPRVRWAAINAI---GQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~~~~~~~il~~ 369 (927)
++..|.-.+..|..-.. -....+.++..+..++.++ +.++|..++..+ ......+++.......+.++..
T Consensus 296 ~~~lq~kIL~~L~kS~~-----Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~ 370 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVI-----AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQ 370 (501)
T ss_pred CHHHHHHHHHHHHHhHH-----HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhc
Confidence 45555554444433111 1134567888888888887 789999999999 8888887776655555666666
Q ss_pred HHHhcc-------CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 370 LVGAMD-------DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 370 ll~~l~-------~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
+...++ +..+...|..++.+|+.++...+.- +..- -.++..|+..+....+.++..+-+|+++++.+....
T Consensus 371 g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l-~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~ 448 (501)
T PF13001_consen 371 GWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL-FSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDL 448 (501)
T ss_pred CccccccccccCCCcccHHHHHHHHHHHHHHHccCccc-cccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcc
Confidence 666663 1135678999999999999887642 2111 457788888888888999999999999999777653
No 157
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.41 E-value=0.0069 Score=60.59 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=115.8
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHH--HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLD--QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPAL 370 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~l 370 (927)
+.++..++.++.+++..+..... ...+. ..++.+...+.++++.+|..|++++..++...... ...+..++.+
T Consensus 24 t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~---~~Ik~~i~~V 98 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ---EQIKMYIPQV 98 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH---HHHHHHHHHH
Confidence 46788999999999987654322 12222 24678889999999999999999999988754221 2233344444
Q ss_pred HHhccC-CCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH-H
Q 002400 371 VGAMDD-FQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY-D 448 (927)
Q Consensus 371 l~~l~~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~ 448 (927)
++.+.+ .-+..++.++..+|.++.-.-. ....+...++.++.++..++..+|..++.++..++..-.- ....+ .
T Consensus 99 c~~~~s~~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~-~~~Ll~~ 174 (254)
T PF04826_consen 99 CEETVSSPLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM-TRELLSA 174 (254)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH-HHHHHhc
Confidence 443332 1357899999999999853321 1233455566778888999999999999999999853221 11111 2
Q ss_pred HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCc
Q 002400 449 AVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGK 486 (927)
Q Consensus 449 ~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~ 486 (927)
+..+.+..++... +...+...++..+..+...+++
T Consensus 175 q~~~~~~~Lf~~~---~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 175 QVLSSFLSLFNSS---ESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cchhHHHHHHccC---CccHHHHHHHHHHHHHHHhhCc
Confidence 3455555555442 2233444456666666555553
No 158
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.37 E-value=0.0073 Score=56.42 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=109.2
Q ss_pred CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh-HHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCC
Q 002400 140 DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV-SEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLP 217 (927)
Q Consensus 140 ~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~ 217 (927)
.+..+...+.++++|+++..|-.|+.++..+++.. .+.|..+....+..+.+.++.+ +..++..++.++..++ ....
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~-~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF-DLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHhc
Confidence 45567777888889999999999999999999997 6777788888899999988876 6678999999999988 5553
Q ss_pred Cch--hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Q 002400 218 SLG--EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQ 279 (927)
Q Consensus 218 ~~~--~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~ 279 (927)
+.. .++...+.+|.+++.+.+++++ ......+++.+..+....|..++++..++-..+..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 322 3555677788888888877653 45667889999999998899999988887766653
No 159
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.36 E-value=0.27 Score=62.64 Aligned_cols=348 Identities=12% Similarity=0.108 Sum_probs=186.8
Q ss_pred ccCHhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHhccCCC--CCccchHHHHHH----HhcCCChHHHHHHHHH
Q 002400 95 RLAPSTQANLKSVLLVQLQNE--TNKSIIKKICDAVSELAASVLPD--GDWPELIPFIFQ----CLVTFNDKIQESALLI 166 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~--~~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~----~l~s~~~~~r~~al~~ 166 (927)
.++.+....+-..|.+.=..| ....-|.-.-+-+..|+.+...+ -.|+.+...+.. ...+.+..++.-|+..
T Consensus 1081 ~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAids 1160 (1780)
T PLN03076 1081 KLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDS 1160 (1780)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 466666555555555532212 00112344445555565554331 267765554444 3334566777778888
Q ss_pred HHHhhhhhHH--HHHH--hHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHh
Q 002400 167 LSRMSQFVSE--VLIA--HGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALN 241 (927)
Q Consensus 167 l~~l~~~~~~--~l~~--~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~ 241 (927)
|..++..+-+ .+.. +-+.++.-|...+... +.+||...++|+..++ ... ...+..-.+.++.++.....
T Consensus 1161 LrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI-~s~-----~~nIkSGWktIF~VLs~aa~ 1234 (1780)
T PLN03076 1161 LRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMV-LSR-----VNNVKSGWKSMFMVFTTAAY 1234 (1780)
T ss_pred HHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHH-----HhhhhcCcHHHHHHHHHHHh
Confidence 8787765432 1111 2245666666666544 7899999999999998 321 23455667777888777666
Q ss_pred cCChhHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHH----hhhc
Q 002400 242 KGNESSAQEALELLIELAATEPRFL----RKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQI----AEGC 313 (927)
Q Consensus 242 ~~~~~~~~~a~~~l~~l~~~~~~~~----~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i----~~~~ 313 (927)
+..+.....+++.+..+....-..+ ...+..++..+.+.+.+. .+.+.--.|+..|..+ +++.
T Consensus 1235 d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~---------~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1235 DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR---------FNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc---------CcccccHHHHHHHHHHHHHHHhcc
Confidence 6777788888888777665421111 134445555444333221 0011111111111111 0000
Q ss_pred --------------------------------hHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH
Q 002400 314 --------------------------------SKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ 361 (927)
Q Consensus 314 --------------------------------~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 361 (927)
.+......=.++..+.....|+.+.||..|+.+|=++....|..+...
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000001111233334444568999999999998877666555544333
Q ss_pred h----HhhHHHHHHHhccCC------------------C----CchHHHHHHHHHHHhHhcCCC--ccccCchHHHHHHH
Q 002400 362 F----HHRLLPALVGAMDDF------------------Q----NPRVQAHAASAVLNFSENCTP--DILTPYLDGIVSKL 413 (927)
Q Consensus 362 ~----~~~il~~ll~~l~~~------------------~----~~~v~~~a~~al~~l~~~~~~--~~~~~~l~~l~~~L 413 (927)
+ +..++..++..+... + +.-+...+..+|..+++-... +.+.+.++.++..|
T Consensus 1386 ~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444444444433210 0 001334444555555543321 33456777888888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH-hHHHHHHHHHHH
Q 002400 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQK-YYDAVMPYLKAI 457 (927)
Q Consensus 414 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~~~i~~~L~~~ 457 (927)
..++...+..+-.....|+..++...|..|.+ .-+.++..+.++
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888877653 233333333333
No 160
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.36 E-value=0.0003 Score=44.33 Aligned_cols=30 Identities=50% Similarity=0.699 Sum_probs=27.0
Q ss_pred HHHHHHHHccCCChhHHhhHhHHHHHHHhh
Q 002400 735 YLPFLLEACNDKHPDVRQAAVYGIGVCAEF 764 (927)
Q Consensus 735 ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~ 764 (927)
++|.+++.++|+++.||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 161
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.39 Score=53.47 Aligned_cols=112 Identities=21% Similarity=0.158 Sum_probs=80.2
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCCh
Q 002400 628 YFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTA 707 (927)
Q Consensus 628 ~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~ 707 (927)
..+++||++|..+|+-++-. +++. +|..++.+.+ +.++
T Consensus 566 D~nDDVrRaAVialGFVl~~-------------dp~~--------~~s~V~lLse---------------------s~N~ 603 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFR-------------DPEQ--------LPSTVSLLSE---------------------SYNP 603 (929)
T ss_pred ccchHHHHHHHHHheeeEec-------------Chhh--------chHHHHHHhh---------------------hcCh
Confidence 35899999999999988643 2221 2222333332 3678
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCC
Q 002400 708 EERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHP 787 (927)
Q Consensus 708 ~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~ 787 (927)
.+|-.+...||-.|...|... .+..|-..+.|+..-|||.|+-+++.+..-..+..-|-+..+-+.+..++.+.
T Consensus 604 HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 999999999998888777532 22222233468888999999999998877777778888888889888888764
No 162
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.33 E-value=0.0028 Score=58.60 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH-hhhhhhhhHHhHHHHHHHHccCCC
Q 002400 669 TDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEH-CREAALKYYDTYLPFLLEACNDKH 747 (927)
Q Consensus 669 ~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~~~~ll~~l~~~l~d~~ 747 (927)
++..+|.+++.+.+.. ..-|-.|...+.+++++ .++.+.|.++++++++.+.++..+
T Consensus 36 y~~~Lpif~dGL~Et~----------------------~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~ 93 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE----------------------HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRD 93 (183)
T ss_pred hhhHHHHHHhhhhccC----------------------ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4567888888887643 56788899999999999 888899999999999999999999
Q ss_pred hhHHhhHhHHHHHHH---hhcCCCcHHHHHHHHHHHHHhhcCCCCCC-----chhhhHHHHHHHHHHHHHhhc
Q 002400 748 PDVRQAAVYGIGVCA---EFGGSVFKPLVGEALSRLDFVIRHPNALH-----SDNVMAYDNAVSALGKICQFH 812 (927)
Q Consensus 748 ~~vr~~a~~~lg~l~---~~~~~~~~~~~~~il~~L~~~l~~~~~~~-----~~~~~~~~na~~al~~l~~~~ 812 (927)
++|..++..+|..++ ...|+.+.||+.++++.+.-..++..... .......|-+-.++..+-++.
T Consensus 94 ~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~G 166 (183)
T PF10274_consen 94 PEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNG 166 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhc
Confidence 999999999999994 44578999999999999885444321000 112345555555555555544
No 163
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0022 Score=67.85 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=120.0
Q ss_pred CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH
Q 002400 285 AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPELQTQFH 363 (927)
Q Consensus 285 ~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 363 (927)
.++.+++.|.+.-.|.+++.+++..--|.+. ..++..++.. .+|.+..||++|..++|-++-. +
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D------ 583 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D------ 583 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEec---C------
Confidence 5778888899999999999888765444433 2345555554 7899999999999999987642 1
Q ss_pred hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh
Q 002400 364 HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF 443 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 443 (927)
...++..++.|.+..++.||...+.+|+-.|...+.. ..++.|-.+..+.+..||+.|+.+++.+.....+.+
T Consensus 584 ~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 584 RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 1456677777777578999999999999999877632 233444455678889999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcc
Q 002400 444 QKYYDAVMPYLKAILVNA 461 (927)
Q Consensus 444 ~~~~~~i~~~L~~~l~~~ 461 (927)
.|-+..+...+.+.+.+.
T Consensus 657 np~v~~I~k~f~~vI~~K 674 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred ChhHHHHHHHHHHHHhhh
Confidence 999999999888887663
No 164
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=97.16 E-value=0.51 Score=50.97 Aligned_cols=188 Identities=12% Similarity=0.193 Sum_probs=114.2
Q ss_pred cchhHHHHHHHHHHHHhhhc---hH--HHHhhHHHHHHHHHhccCC------C-CHHHHHHHHHHHHHhHhhhc--hhHH
Q 002400 294 PEWQKHHAVLIALAQIAEGC---SK--VMIKNLDQVVSMVLNSFQD------P-HPRVRWAAINAIGQLSTDLG--PELQ 359 (927)
Q Consensus 294 ~~~~~r~aal~al~~i~~~~---~~--~~~~~l~~l~~~l~~~l~d------~-~~~vr~~a~~~l~~~~~~~~--~~~~ 359 (927)
.+-..|.-|...|....... ++ .+.++++.++..+.+.+.. + +.++-..|+.++|.+..+.. ..+.
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 34445555666655544332 22 3456666666666655543 2 66788899999998875321 1111
Q ss_pred HHhHhhHHHHHHHhccCCC-CchHHHHHHHHHHHhHhcCCCccccCchHH-HHHHHHHHhc-CCChhHHHHHHHHHHHHH
Q 002400 360 TQFHHRLLPALVGAMDDFQ-NPRVQAHAASAVLNFSENCTPDILTPYLDG-IVSKLLVLLQ-NGKQMVQEGALTALASVA 436 (927)
Q Consensus 360 ~~~~~~il~~ll~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~l~~-l~~~L~~~l~-~~~~~v~~~a~~al~~l~ 436 (927)
.++...++...+..+.+.. +..+...+.++|.. +.+++..+...... ++..+...-+ -.+..+-.+.+.++..+.
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 2334456777777776622 33555555555542 34554444443333 3333333332 345667788889999999
Q ss_pred HHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcc
Q 002400 437 DSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKD 487 (927)
Q Consensus 437 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~ 487 (927)
...+..+....+.-+|.+...+-. ....+|.+|+.+...+...+|++
T Consensus 163 ~q~p~~M~~~~~~W~~~l~~~l~~----~~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 163 SQFPQQMIKHADIWFPILFPDLLS----SAKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHHHHHhChh
Confidence 999988888888778877777654 34568888888877777777743
No 165
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.028 Score=57.30 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=103.3
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALV 371 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll 371 (927)
+.+...|+.|+.-|..+++.......-+--..+..++.++++.+..+|+.|++.+|..+.+-++ .+.. .-...++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~-~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPK-SQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcccHHHHH
Confidence 4568899999999998888765422211112234445589999999999999999999987543 3232 2334788888
Q ss_pred HhccCCCCchHHHHHHHHHHHhHhcCCCccccCchH-HHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhhhh
Q 002400 372 GAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 372 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~l~~~L~~~l~~--~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
..+...++..+|..|..|+..++.+..+.. ..++. .=...|..++++ .+...+..++..++.+......+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 888864567888999999999998876432 12211 115667777777 55677888888888888665543
No 166
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.12 E-value=0.0069 Score=56.02 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC-----CCCHHHHHHHH
Q 002400 270 LVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ-----DPHPRVRWAAI 344 (927)
Q Consensus 270 l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~ 344 (927)
.+++++.+++++.++ .+|..|+.++..+|.+..--+...+ .+..... +.+........
T Consensus 8 yP~LL~~L~~iLk~e---------~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l 70 (160)
T PF11865_consen 8 YPELLDILLNILKTE---------QSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL 70 (160)
T ss_pred hHHHHHHHHHHHHhC---------CCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH
Confidence 467777777555432 5699999999999998765443211 1111111 12222222222
Q ss_pred HHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhH
Q 002400 345 NAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMV 424 (927)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v 424 (927)
. .....+...+-|...++..|+..+.|..-..-...+..++..+++..+... .||++.+++.++..+.+.+...
T Consensus 71 ~-----~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~ 144 (160)
T PF11865_consen 71 P-----MMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSL 144 (160)
T ss_pred h-----hccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHH
Confidence 1 111112221235556788899999983334445567788888887777665 6999999999999999888899
Q ss_pred HHHHHHHHHHHHHH
Q 002400 425 QEGALTALASVADS 438 (927)
Q Consensus 425 ~~~a~~al~~l~~~ 438 (927)
++..+.-++.++..
T Consensus 145 ~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 145 REFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888887754
No 167
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.11 E-value=0.15 Score=53.22 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=110.6
Q ss_pred HHHHHHHHHhcccccc--cHHHHHHHH-hhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 002400 597 NMLCCYADELKEGFFP--WIDQVAPTL-VPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYII 673 (927)
Q Consensus 597 ~~l~~l~~~~~~~~~~--~~~~~~~~l-~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il 673 (927)
.....+.+.....+.| .+..+++.+ .|.+.+. +..||..|.+++|-++-.- ++.....+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld-----------------~~~a~~~l 66 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSS-DPAVRELALKCLGLCCLLD-----------------KELAKEHL 66 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhC-----------------hHHHHHHH
Confidence 3444555555555555 344777654 4777764 7899999999999886441 23444455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhH---------HhHHHHHHHHcc
Q 002400 674 PALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYY---------DTYLPFLLEACN 744 (927)
Q Consensus 674 ~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~---------~~ll~~l~~~l~ 744 (927)
+.+...+..+ +..+|..|+.++.|++-..|....... ..++..+.+.+.
T Consensus 67 ~l~~~~~~~~----------------------~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 124 (298)
T PF12719_consen 67 PLFLQALQKD----------------------DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD 124 (298)
T ss_pred HHHHHHHHhC----------------------CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh
Confidence 5666666443 377888899999999888776554422 357888888888
Q ss_pred CCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCC
Q 002400 745 DKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRD 814 (927)
Q Consensus 745 d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~ 814 (927)
+.+++++..|+.|+..+.-++.-.- .+.++..|.-..=+|.. .++...| .|++-+...++.
T Consensus 125 ~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t--~~~~~Lr----Q~L~~Ffp~y~~ 185 (298)
T PF12719_consen 125 SENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST--EDNQRLR----QCLSVFFPVYAS 185 (298)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc--CCcHHHH----HHHHHHHHHHHc
Confidence 8899999999999999987765322 34556666544445532 2234344 455555555443
No 168
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.051 Score=52.65 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=142.4
Q ss_pred HHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc
Q 002400 57 LNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASV 135 (927)
Q Consensus 57 ~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~ 135 (927)
..+.+++.+ +....-|.-|-..||+..... ....+-+.+.++ +....+..+.+++..
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~-----------------~i~~i~ka~~d~-s~llkhe~ay~LgQ~---- 63 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA-----------------AIKAITKAFIDD-SALLKHELAYVLGQM---- 63 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH-----------------HHHHHHHhcccc-hhhhccchhhhhhhh----
Confidence 455566665 555666777777787776554 134444555544 556666677777532
Q ss_pred CCCCCccchHHHHHHHhc--CCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 002400 136 LPDGDWPELIPFIFQCLV--TFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIM 213 (927)
Q Consensus 136 ~~~~~w~~ll~~l~~~l~--s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 213 (927)
...+-+|.+...+. +..+.+|+.|..+|+.+.. +.+.+++.+..+|+-..|+-....++..+=-
T Consensus 64 ----~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 64 ----QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred ----ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 22457888877665 4568899999999998762 2356667777777766677664444443210
Q ss_pred -hhCCCchhHHhHHhhHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc---Cchh
Q 002400 214 -NCLPSLGEKERFLDLLPLMMRTLTEALNKGNES-SAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAE---AVFP 288 (927)
Q Consensus 214 -~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~-~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~---~~i~ 288 (927)
..+........+.+.- +.+. .....-+.-..+.+.....+..+.. .+-++....+ .-+.
T Consensus 130 ~~~~~~~~~~~p~~Svd-------------Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~a---mF~LRn~g~EeaI~al~ 193 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVD-------------PAPPANLSSVHELRAELLDETKPLFERYRA---MFYLRNIGTEEAINALI 193 (289)
T ss_pred hhccccccccCccccCC-------------CCCccccccHHHHHHHHHhcchhHHHHHhh---hhHhhccCcHHHHHHHH
Confidence 1111100000000000 0000 0000000000111111111111100 0000000000 0011
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCC--CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQD--PHPRVRWAAINAIGQLSTDLGPELQTQFHHRL 366 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~i 366 (927)
+.+.+++.-.|..+.++||++-.- .-+|.+.+.|.| .+|.||.-|+.+||.++. +..
T Consensus 194 ~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~ 252 (289)
T KOG0567|consen 194 DGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDC 252 (289)
T ss_pred HhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHH
Confidence 333455677788888888887552 234555555544 589999999999999875 245
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 367 LPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 367 l~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
++.|.+.++| +.+.|++.+..+|...-
T Consensus 253 ~~vL~e~~~D-~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 253 VEVLKEYLGD-EERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHHH
Confidence 7778888899 88899999888887654
No 169
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.03 E-value=0.98 Score=51.95 Aligned_cols=145 Identities=12% Similarity=0.254 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCC-CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQD-PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD 375 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~ 375 (927)
.+|--+..+|+.++-...+ .....+|.+.+.|.- ....+|.....+++-+|.... ...+..+|.+..+|.
T Consensus 946 ~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhc
Confidence 4455566666666544333 234577777777643 345678777777887776542 345677899999999
Q ss_pred CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHH
Q 002400 376 DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLK 455 (927)
Q Consensus 376 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~ 455 (927)
| +++.||..+...|.++...- +..+-..++=+++..+-+.++++|..+=.+++.+...-.+.| |+..++..+.
T Consensus 1017 D-p~~iVRrqt~ilL~rLLq~~----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1017 D-PSVIVRRQTIILLARLLQFG----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYII 1089 (1529)
T ss_pred C-chHHHHHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 9 99999999999999987542 234555565556666667789999999999999887666554 3445555554
Q ss_pred HH
Q 002400 456 AI 457 (927)
Q Consensus 456 ~~ 457 (927)
.+
T Consensus 1090 ~l 1091 (1529)
T KOG0413|consen 1090 AL 1091 (1529)
T ss_pred HH
Confidence 43
No 170
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=2.4 Score=56.34 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=105.1
Q ss_pred hhhhCCcchhHHHHHHHHHHHHhhhchHH--------HHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHH
Q 002400 288 PGFLAAPEWQKHHAVLIALAQIAEGCSKV--------MIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQ 359 (927)
Q Consensus 288 ~~~l~~~~~~~r~aal~al~~i~~~~~~~--------~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 359 (927)
.+.+...+...+.++..++..+-+..... ..+.+..+++.+...-.++.|.-|...+..|+.+.+.+.....
T Consensus 990 ~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l 1069 (3550)
T KOG0889|consen 990 VESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWL 1069 (3550)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHH
Confidence 34445667777888888877766543321 2245566777777777788899999999999888888775444
Q ss_pred HHhHhhHHHHHHHhccCCCCchHH----HHHHHHHHHhHhcC----CCcccc-CchHHHHHHHHHHhcCCChhHHHHHHH
Q 002400 360 TQFHHRLLPALVGAMDDFQNPRVQ----AHAASAVLNFSENC----TPDILT-PYLDGIVSKLLVLLQNGKQMVQEGALT 430 (927)
Q Consensus 360 ~~~~~~il~~ll~~l~~~~~~~v~----~~a~~al~~l~~~~----~~~~~~-~~l~~l~~~L~~~l~~~~~~v~~~a~~ 430 (927)
..+...++..++..+.+ ...++. ..+...+..+...+ ..+..+ .....++..+..-+.+++..||+.+..
T Consensus 1070 ~d~~~d~~~~l~fvl~d-~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~ 1148 (3550)
T KOG0889|consen 1070 LDFQVDILKALFFVLKD-TESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQK 1148 (3550)
T ss_pred HHHHHHHhhhHHHhhcC-CccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 56666777777777766 222221 12333333332221 111111 245567777777788889999999999
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHH
Q 002400 431 ALASVADSSQGQFQKYYDAVMPYL 454 (927)
Q Consensus 431 al~~l~~~~~~~~~~~~~~i~~~L 454 (927)
++..+....+....+.+..+-..+
T Consensus 1149 ~L~~i~~~s~~~v~~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1149 LLRLISELSGKSVVKLLEPFKDVL 1172 (3550)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999888765544444443333
No 171
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.00 E-value=0.83 Score=50.79 Aligned_cols=278 Identities=16% Similarity=0.142 Sum_probs=132.1
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchH
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELI 145 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll 145 (927)
..+...+++|+.++-++++.. ..+ .+.-...++....++ +..||.++...+-.+.+.. | ..-+.+.
T Consensus 33 kg~~k~K~Laaq~I~kffk~F-------P~l----~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~-~-~~v~kva 98 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHF-------PDL----QEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN-P-EHVSKVA 98 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC--------GGG----HHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T----T-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhC-------hhh----HHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH-H-HHHhHHH
Confidence 457999999999999887663 333 344456677776766 8899999888888777642 1 2336788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhh--CCCCHHHHHHHHHHHHHHHHhhCCCchhHH
Q 002400 146 PFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFL--GSNNFDLRIAALEATVNFIMNCLPSLGEKE 223 (927)
Q Consensus 146 ~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 223 (927)
..|.++++++++..+...=.+|..+...-+.. .+-.+|.+.. ..++..+|..+++++..-+ ..+.... ..
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl-~~l~~~~-~~ 170 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG------TLTGLFSQIESSKSGDEQVRERALKFLREKL-KPLKPEL-LT 170 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHH---HS-HHHHHHHHHHHHHHG-GGS-TTT-S-
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcccCchHHHHHHHHHHHHHH-hhCcHHH-hh
Confidence 88999999988776666666666555443332 1222333333 1347789999999987765 4332110 00
Q ss_pred hHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHHHHhhccCchhhhhCCcchh--
Q 002400 224 RFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFL----RKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQ-- 297 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~----~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~-- 297 (927)
.-.+.-..++..+.+.+.+-..+. ++.+.++....+.+- ......+++.+.+.++=+ .-+...+..
T Consensus 171 p~~E~e~~i~~~ikkvL~DVTaeE----F~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld----~~f~~sD~e~I 242 (556)
T PF05918_consen 171 PQKEMEEFIVDEIKKVLQDVTAEE----FELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLD----QPFDPSDPESI 242 (556)
T ss_dssp --HHHHHHHHHHHHHHCTT--HHH----HHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTT----S---SSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccC----CCCCCcCHHHH
Confidence 001222334444444443322222 333333333322110 112233444443322100 111111111
Q ss_pred --HHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc
Q 002400 298 --KHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD 375 (927)
Q Consensus 298 --~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~ 375 (927)
.......|+-..+.+... ...+.-+...+++.+.+-....+-.-+.+++.++.+.+..-....++.++..|...+-
T Consensus 243 drli~C~~~Alp~fs~~v~S--skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 243 DRLISCLRQALPFFSRGVSS--SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhHHhcCCCCh--HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 112222233333333322 2445555566666677666666777888888888877643323455555555554443
No 172
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.99 E-value=0.12 Score=54.29 Aligned_cols=183 Identities=13% Similarity=0.197 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHccC----cHHHHHHHHHH
Q 002400 199 DLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESS-AQEALELLIELAATE----PRFLRKQLVDV 273 (927)
Q Consensus 199 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~-~~~a~~~l~~l~~~~----~~~~~~~l~~l 273 (927)
.+|...++.+..++ ...++. ......++|++++.+..--....++. -.+++.++..++..- ...+...+..+
T Consensus 42 ~iKkeIL~Li~t~i-~~~~~~--~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFI-SKAEDP--EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHH-HT-S-H--HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccCCH--HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 36777888888888 554332 23456788888875433222222222 124455555555432 22333333444
Q ss_pred HHHHHHHhhccCchhhhhCC---cchhHHHHHHHHHHHHhhhchHHHH----hhHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002400 274 VGSMLQVAEAEAVFPGFLAA---PEWQKHHAVLIALAQIAEGCSKVMI----KNLDQVVSMVLNSFQDPHPRVRWAAINA 346 (927)
Q Consensus 274 l~~ll~~~~~~~~i~~~l~~---~~~~~r~aal~al~~i~~~~~~~~~----~~l~~l~~~l~~~l~d~~~~vr~~a~~~ 346 (927)
+...+ .++++ +-+..|..-...|.++.+.|...+. +.+..+++.+.-++++++..|...++.+
T Consensus 119 f~~Tl----------~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 119 FECTL----------PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp HHHHH----------HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHH----------HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44333 22322 3478999999999999998876442 4577889999999999999999999999
Q ss_pred HHHhHhhhch-------hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 347 IGQLSTDLGP-------ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 347 l~~~~~~~~~-------~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
+..+.+.+.. .+...|+-.++..++..+.|..+...-..-+..|..+.
T Consensus 189 l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 189 LLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 9999887755 23345566667777777777344444444445555554
No 173
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.84 E-value=1.2 Score=49.88 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHhccCCCCCccchHHHHHHHhc----C-CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC
Q 002400 121 IKKICDAVSELAASVLPDGDWPELIPFIFQCLV----T-FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS 195 (927)
Q Consensus 121 r~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~----s-~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~ 195 (927)
|..++.-+...... ++- +-++.++.+.+ . ...+.|+.++..+..+++.-.......-..++..+...-.+
T Consensus 7 R~~a~~~l~~~i~~-~~~----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 7 RIKAAEELCESIQK-YPL----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHh-CCc----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 44444444444332 231 34555554443 2 34578999999999998765442111112223333222222
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHH----------h-------------cCChhHHHHHH
Q 002400 196 NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEAL----------N-------------KGNESSAQEAL 252 (927)
Q Consensus 196 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l----------~-------------~~~~~~~~~a~ 252 (927)
++...|..|+.+|..=- +.+. ....++.|.+...+..+. . +.++......+
T Consensus 82 ~d~~~~l~aL~~LT~~G-rdi~-----~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNG-RDID-----FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred hhHHHHHHHHHHHHcCC-cCch-----hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 24456767666665422 1110 112234444444443332 0 01333445667
Q ss_pred HHHHHHHccCcHHHH-HHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhh--chHHHHhhHHHHHHHHH
Q 002400 253 ELLIELAATEPRFLR-KQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEG--CSKVMIKNLDQVVSMVL 329 (927)
Q Consensus 253 ~~l~~l~~~~~~~~~-~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~--~~~~~~~~l~~l~~~l~ 329 (927)
.++.++.+.....+. ..+..++..++.++.. ..+...-++++..+.++... .|. ..+..++..+.
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~---------Ts~~~di~~~L~vldaii~y~~iP~---~sl~~~i~vLC 223 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKS---------TSSEDDIEACLSVLDAIITYGDIPS---ESLSPCIEVLC 223 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc---------cCcHHHHHHHHHHHHHHHHcCcCCh---HHHHHHHHHHh
Confidence 777777765443332 4455555555544321 23334457788888887763 333 56677777776
Q ss_pred hccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhc--cC---CCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400 330 NSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAM--DD---FQNPRVQAHAASAVLNFSENCTPDILTP 404 (927)
Q Consensus 330 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l--~~---~~~~~v~~~a~~al~~l~~~~~~~~~~~ 404 (927)
...+-. .....+..++..++.. ......+..++..| .+ .++..+-..|...+..+.-..+.+.+..
T Consensus 224 si~~~~--~l~~~~w~~m~nL~~S-------~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~ 294 (464)
T PF11864_consen 224 SIVNSV--SLCKPSWRTMRNLLKS-------HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS 294 (464)
T ss_pred hHhccc--ccchhHHHHHHHHHcC-------ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce
Confidence 653332 5566677777777642 22234455555555 22 1345666788888888876664333321
Q ss_pred -chH--HHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 405 -YLD--GIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 405 -~l~--~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
... .+++.+...++..+..+--.++..+..+.
T Consensus 295 l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 295 LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 133 48999999999887777667777777776
No 174
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.75 E-value=0.02 Score=48.82 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=78.0
Q ss_pred ccCchHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHH
Q 002400 402 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECI 477 (927)
Q Consensus 402 ~~~~l~~l~~~L~~~l~~----~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 477 (927)
+++++-.++..+-..+.+ .+...|..++.+++.+.+..++.+..+.++++-.|...+.. ..+|..+++|.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHHH
Confidence 456666777777777766 45678899999999999988877777877877777777643 36899999999
Q ss_pred HHHHHhhCcchhhhhHHHHHHHHHHHh
Q 002400 478 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 504 (927)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~i~~~l~~~~ 504 (927)
..+...++.+.+.|.++.++-.+++.+
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999999998889999888888777654
No 175
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.74 E-value=0.95 Score=47.35 Aligned_cols=354 Identities=14% Similarity=0.114 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 002400 54 AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAA 133 (927)
Q Consensus 54 ~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~ 133 (927)
.++..++.++.....++.-+..-+++-..+.........+.......+...-...+..|... +..+....+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~-d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ-DTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Confidence 46677778877655556666666666666655422222222222223333345567777765 88888888899998887
Q ss_pred ccCC---CCCccchHHHHHHHhcC-CChHHHHHHHHHHHHhhhhhHHHHH----HhHHHHHHHHHhhhCCCCHHHHHHHH
Q 002400 134 SVLP---DGDWPELIPFIFQCLVT-FNDKIQESALLILSRMSQFVSEVLI----AHGDTLHEVFSKFLGSNNFDLRIAAL 205 (927)
Q Consensus 134 ~~~~---~~~w~~ll~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~l~----~~~~~l~~~l~~~l~~~~~~vr~~a~ 205 (927)
...- .+...-....+-..+++ .++..+..+..||..+...-.-... .-...+++.+. -+..+.++++..+
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~--s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA--STKCGFQLQYQSI 221 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh--ccCcchhHHHHHH
Confidence 5322 11333344555555554 6667777788888777643221111 11233344443 1223778888888
Q ss_pred HHHHHHHHhhCCCchhHH--hHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc--HHHHHHHHHH----HHHH
Q 002400 206 EATVNFIMNCLPSLGEKE--RFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEP--RFLRKQLVDV----VGSM 277 (927)
Q Consensus 206 ~~l~~l~~~~~~~~~~~~--~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~l~~l----l~~l 277 (927)
.|+..+. | ++.-.+ ....+++.+.+++... ..+.+.+-++..+.++++..+ ...+.+...+ ++..
T Consensus 222 fciWlLt---F-n~~~ae~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~ 294 (442)
T KOG2759|consen 222 FCIWLLT---F-NPHAAEKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT 294 (442)
T ss_pred HHHHHhh---c-CHHHHHHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH
Confidence 7776654 2 111111 2224555555555543 346777888888888887643 1111111111 1112
Q ss_pred HHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHH--hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc
Q 002400 278 LQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMI--KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 278 l~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~--~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 355 (927)
++.++.. ..+| ...+ ..+..+-+...+..+ ..+++...-+..+.-+-+|.-+..-+|-=.. ..+
T Consensus 295 l~~L~~r-----kysD--EDL~----~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa--~rl- 360 (442)
T KOG2759|consen 295 LQSLEER-----KYSD--EDLV----DDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENA--DRL- 360 (442)
T ss_pred HHHHHhc-----CCCc--HHHH----HHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhH--HHH-
Confidence 2222110 0111 1111 112222222222111 1244445555555555566555554443211 111
Q ss_pred hhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc--cccCchHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002400 356 PELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD--ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 433 (927)
Q Consensus 356 ~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~--~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~ 433 (927)
.+---+++..|+..|+...+|.+-.-||.=++.+++..+.. .+..|- -=+.+++++++.++.||-+|+.|+.
T Consensus 361 ----nennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g--gKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 361 ----NENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG--GKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred ----hhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc--hHHHHHHHhcCCCchHHHHHHHHHH
Confidence 12223688888888887456888889999999999887632 122222 2356788899999999999999988
Q ss_pred HHHH
Q 002400 434 SVAD 437 (927)
Q Consensus 434 ~l~~ 437 (927)
.+..
T Consensus 435 ~lm~ 438 (442)
T KOG2759|consen 435 KLMV 438 (442)
T ss_pred HHHh
Confidence 7753
No 176
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=1.5 Score=49.57 Aligned_cols=149 Identities=19% Similarity=0.151 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHH
Q 002400 54 AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNE-TNKSIIKKICDAVSELA 132 (927)
Q Consensus 54 ~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~-~~~~vr~~~~~~i~~ia 132 (927)
..++.|++-+.++.-.+-|.-|+..||.+-.++ . .+.-.+=...|++.|..+ .++.+-..+-+.+..+.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkY-------R---~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY-------R---EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH-------H---HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 467778887777777888888888888665443 1 111111123344444433 23444444444444444
Q ss_pred hccC-C------C-----C--------CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH---hHHHHHHHH
Q 002400 133 ASVL-P------D-----G--------DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA---HGDTLHEVF 189 (927)
Q Consensus 133 ~~~~-~------~-----~--------~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~---~~~~l~~~l 189 (927)
.++- | . | +-++.+..+++.+...+..+|..++.+|..+....|..+.. ..|.-+..+
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 4331 0 0 1 23678888888888889999999999999999988876554 245567778
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHH
Q 002400 190 SKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 190 ~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+..+.|..+.+|..|+-.|..++
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHH
Confidence 88899988899999999999988
No 177
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.70 E-value=0.12 Score=54.05 Aligned_cols=151 Identities=20% Similarity=0.270 Sum_probs=102.1
Q ss_pred hHHHHHHHH-HhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 320 NLDQVVSMV-LNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 320 ~l~~l~~~l-~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
.+..+++.+ .++++++++.||..|..|+|-++-. .. ....+.++.+...+.. .+..|+..|+.++..+.-..+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DK----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-Ch----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 345677544 5889999999999999999998763 22 3445566677777765 688999999999988887666
Q ss_pred CccccCc--------hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHH
Q 002400 399 PDILTPY--------LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLR 470 (927)
Q Consensus 399 ~~~~~~~--------l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr 470 (927)
.+.+... ...+++.+.+.+.+.++.++..+++.+..+.-...-.- .+.++..|.-.+-+....++..+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence 4443332 34788889999999999999999999998764433211 234444444443333333344454
Q ss_pred HHHHHHHHHHHHh
Q 002400 471 AKSMECISLVGMA 483 (927)
Q Consensus 471 ~~a~~~l~~l~~~ 483 (927)
.|++.+...
T Consensus 174 ----Q~L~~Ffp~ 182 (298)
T PF12719_consen 174 ----QCLSVFFPV 182 (298)
T ss_pred ----HHHHHHHHH
Confidence 366665543
No 178
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.70 E-value=0.022 Score=48.08 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=77.5
Q ss_pred cccCchHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHH
Q 002400 401 ILTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMEC 476 (927)
Q Consensus 401 ~~~~~l~~l~~~L~~~l~~~~----~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 476 (927)
.+++++-.++..+-..+.+.+ ..-|..++.+|+.+.+..|..+..+.++++-.|...+. ...+|..+++|
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~------~~eL~~~al~~ 77 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE------IPELRSLALRC 77 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------chhHHHHHHHH
Confidence 355677778888888777654 24589999999999999888888888888888887764 34599999999
Q ss_pred HHHHHHhhCcchhhhhHHHHHHHHHHH
Q 002400 477 ISLVGMAVGKDKFRDDAKQVMEVLMSL 503 (927)
Q Consensus 477 l~~l~~~~~~~~~~~~~~~i~~~l~~~ 503 (927)
...+...+..+...+.+..++-.+.+.
T Consensus 78 W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 78 WHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999887888877777776654
No 179
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.67 E-value=0.38 Score=52.60 Aligned_cols=243 Identities=15% Similarity=0.133 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChh---HHHHHHHHHHh----cCCChhHHHHHHHHHHhhcccCccc
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPD---AFALNLSRMLS----SSSLPECRAMSAILLRKHLTRDDST 89 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~---~~~~~L~~il~----~~~~~~~R~~a~v~Lk~~i~~~~~~ 89 (927)
.|..=+..++..+.|+|+..|......|..+....++ .....+..++. ......--.-.--+|...++..
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf--- 206 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF--- 206 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT----
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc---
Confidence 4556678888888999999999998888775543332 11122222222 1222222222223444444442
Q ss_pred cccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHH
Q 002400 90 SFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSR 169 (927)
Q Consensus 90 ~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~ 169 (927)
=..+.++++..++..|+.............++..++..+...+.. --..++..++...--.+......-+.-+..
T Consensus 207 ---~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 207 ---AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPVIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp ----SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHHHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred ---CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 225788899999999998888776677788999999988876521 223344444444444555555566777788
Q ss_pred hhhhhH-HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH--HHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC-Ch
Q 002400 170 MSQFVS-EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVN--FIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG-NE 245 (927)
Q Consensus 170 l~~~~~-~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~-~~ 245 (927)
+++..+ ..+......+...+..++++++..|-..|+..|.+ ++ ..+. .....++|.+.+.+.+..+.. +.
T Consensus 282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~-----~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLIS-----QNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHH-----CTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHH-----hChHHHHHHHHHHHHHHHHHHhhH
Confidence 887765 45667788899999999999999999999987765 22 2110 112335555555555433222 56
Q ss_pred hHHHHHHHHHHHHHccCcHHHHHHHHHH
Q 002400 246 SSAQEALELLIELAATEPRFLRKQLVDV 273 (927)
Q Consensus 246 ~~~~~a~~~l~~l~~~~~~~~~~~l~~l 273 (927)
.+...+..++..+.+.++..+..+....
T Consensus 356 ~Vr~~a~~vl~~l~~~d~~lf~~~~~~~ 383 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEMDPKLFDKCAQKY 383 (409)
T ss_dssp THHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 6788888888888888888877655543
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.9 Score=50.42 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc---
Q 002400 185 LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT--- 261 (927)
Q Consensus 185 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~--- 261 (927)
.-|.+.++|+-++..||..|+..+..+. ...+..........++..=...+.+++.++-+.++..|++.+..+...
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~f-P~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAF-PIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhc-cCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999988887 654332223445555655566677778888888887777655444322
Q ss_pred --CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHH
Q 002400 262 --EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRV 339 (927)
Q Consensus 262 --~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~v 339 (927)
++..+...+..++..+ -.+..-.+|.+....|..++..... .+.+..++|.+-..|.|.+.+|
T Consensus 254 ~iP~~i~~~ll~kI~d~~-------------a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~V 318 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDEL-------------AFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKV 318 (1005)
T ss_pred HcCHHHHHHHHHHHHHHh-------------hhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhH
Confidence 2334444444444432 2345568999999999888775322 2567788888888899999999
Q ss_pred HHHHHHHHHHhHh
Q 002400 340 RWAAINAIGQLST 352 (927)
Q Consensus 340 r~~a~~~l~~~~~ 352 (927)
|-|+...+..+-.
T Consensus 319 RvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 319 RVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 181
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=2.9 Score=51.54 Aligned_cols=368 Identities=14% Similarity=0.134 Sum_probs=177.0
Q ss_pred HHHHHHHh--ccCCCCHHHHHHHHHHHHHhHhhhchhH--HHHhHhhHHHHHHH---hccCCCCchHHHHHHHHHHHhHh
Q 002400 323 QVVSMVLN--SFQDPHPRVRWAAINAIGQLSTDLGPEL--QTQFHHRLLPALVG---AMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 323 ~l~~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~il~~ll~---~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
.+..++++ .|++++.-||--.+.|++.+..-+.|+. ...++.+++..+++ .|.|..+|.-..+ ...|.++..
T Consensus 48 pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~-~~lletl~~ 126 (1266)
T KOG1525|consen 48 PLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRY-FYLLETLAK 126 (1266)
T ss_pred HHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhH-HHHHHHHHH
Confidence 34444443 4788899999999999999998776653 13466666666655 4556344433222 222233222
Q ss_pred c-----CCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHH
Q 002400 396 N-----CTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLR 470 (927)
Q Consensus 396 ~-----~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr 470 (927)
. +....-...+..+...++..+..+.+.--...+..++.+...... --..++..++.-+-.... ..+
T Consensus 127 ~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~----v~~e~L~~ll~~lv~~~~----~~~ 198 (1266)
T KOG1525|consen 127 VKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT----VQSELLDVLLENLVKPGR----DTI 198 (1266)
T ss_pred hHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHhccCCC----Ccc
Confidence 1 111111234566666666666555433222222333333322221 112233333333322221 222
Q ss_pred HHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHccc
Q 002400 471 AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQL 550 (927)
Q Consensus 471 ~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~ 550 (927)
..|...-..++..++ +...+.....+...+..... .-...+......+-.+-... ..-+-.++|.|..-+..
T Consensus 199 ~~a~~la~~li~~~a-~~~~~~i~~f~~~~~~~~~s---~~~~~~~~~he~i~~L~~~~----p~ll~~vip~l~~eL~s 270 (1266)
T KOG1525|consen 199 KEADKLASDLIERCA-DNLEDTIANFLNSCLTEYKS---RQSSLKIKYHELILELWRIA----PQLLLAVIPQLEFELLS 270 (1266)
T ss_pred HHHHHHHHHHHHHhh-hhhchhHHHHHHHHHhhccc---cccchhhHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhc
Confidence 333333333444443 23333333333322221110 01112233333333332221 12234455555555533
Q ss_pred CCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCc
Q 002400 551 KPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFH 630 (927)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 630 (927)
+ + .+.|..|..++|.+...-+..+..-.+.++...+..+.| .+
T Consensus 271 e-----------------~-------------------~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D-~~ 313 (1266)
T KOG1525|consen 271 E-----------------Q-------------------EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFND-IS 313 (1266)
T ss_pred c-----------------h-------------------HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhcc-CC
Confidence 1 1 133567888888887665555444445555555555666 38
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhH
Q 002400 631 EEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEER 710 (927)
Q Consensus 631 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r 710 (927)
.+||..+......++.+- +...+.. .++-. +... +. |....+|
T Consensus 314 ~~vR~~~v~~~~~~l~~~-------------~~~~~~~--~~~~~-l~~~--~~-------------------D~~~rir 356 (1266)
T KOG1525|consen 314 VEVRMECVESIKQCLLNN-------------PSIAKAS--TILLA-LRER--DL-------------------DEDVRVR 356 (1266)
T ss_pred hhhhhhHHHHhHHHHhcC-------------chhhhHH--HHHHH-HHhh--cC-------------------Chhhhhe
Confidence 899999999988887541 1101110 01111 1111 11 1123333
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhh-------cCCCcHHHHHHHHHHHHHh
Q 002400 711 RIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEF-------GGSVFKPLVGEALSRLDFV 783 (927)
Q Consensus 711 ~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~-------~~~~~~~~~~~il~~L~~~ 783 (927)
..++-...++.... ..+.+.++..+..++.|..+.||..|..++..+.++ ++....+-+..|-..|+.+
T Consensus 357 ~~v~i~~~~v~~~~----l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~ 432 (1266)
T KOG1525|consen 357 TQVVIVACDVMKFK----LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHL 432 (1266)
T ss_pred eeEEEEEeehhHhh----hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhh
Confidence 33322222222221 234555888888899999999999999999988875 2333344444444555555
Q ss_pred hc
Q 002400 784 IR 785 (927)
Q Consensus 784 l~ 785 (927)
+-
T Consensus 433 ~y 434 (1266)
T KOG1525|consen 433 YY 434 (1266)
T ss_pred Hh
Confidence 43
No 182
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=1.6 Score=48.68 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 319 KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
+.+..++.+++++...++..||...|..+..++...+ ++....++.+...+...+.| ..|.||..|..+|..+-+.-.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcCCC
Confidence 3566788899999999999999999999999987443 33356788899999999999 999999999999999864322
Q ss_pred CccccCchHHHHHHHHHHh-cCCChhHHHHHHHHHH
Q 002400 399 PDILTPYLDGIVSKLLVLL-QNGKQMVQEGALTALA 433 (927)
Q Consensus 399 ~~~~~~~l~~l~~~L~~~l-~~~~~~v~~~a~~al~ 433 (927)
.+.. ++...+...+ +++++.||..++..|.
T Consensus 159 dee~-----~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 159 DEEC-----PVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CCcc-----cHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2211 2334444444 4677899999987765
No 183
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.37 Score=53.46 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=123.9
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHH
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKE 223 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 223 (927)
++..++....+++..+|...+.++..+.+...+--...++.+...+...+.|..+.||..|+.+|..+= . .++.++.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ-~-d~~dee~- 162 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ-G-DPKDEEC- 162 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh-c-CCCCCcc-
Confidence 444455555678899999999999999986554434457788888888899999999999999999875 2 2211111
Q ss_pred hHHhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHH
Q 002400 224 RFLDLLPLMMRTLTEALN-KGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV 302 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa 302 (927)
+ +.+.+..+++ ++.++++..++..+.- + + ...|.++ +.-.|-+-..|+-+
T Consensus 163 ---~----v~n~l~~liqnDpS~EVRRaaLsnI~v---d-n--------sTlp~Iv----------eRarDV~~anRrlv 213 (892)
T KOG2025|consen 163 ---P----VVNLLKDLIQNDPSDEVRRAALSNISV---D-N--------STLPCIV----------ERARDVSGANRRLV 213 (892)
T ss_pred ---c----HHHHHHHHHhcCCcHHHHHHHHHhhcc---C-c--------ccchhHH----------HHhhhhhHHHHHHH
Confidence 1 2233333333 5567777777644321 1 1 1122222 22223333344433
Q ss_pred HH-HHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCch
Q 002400 303 LI-ALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 303 l~-al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
.. ++-.+ ..+. -.+..-+..+-.+|+|.+..|+.++...+.. .|+ .+...=++.+++.++-..+.+
T Consensus 214 Y~r~lpki-d~r~----lsi~krv~LlewgLnDRe~sVk~A~~d~il~--~Wl------~~~dgni~ElL~~ldvsnss~ 280 (892)
T KOG2025|consen 214 YERCLPKI-DLRS----LSIDKRVLLLEWGLNDREFSVKGALVDAILS--GWL------RFSDGNILELLERLDVSNSSE 280 (892)
T ss_pred HHHhhhhh-hhhh----hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH--HHh------hhccccHHHHHHHhccccchH
Confidence 32 22222 2211 2234556677789999999999999888754 232 233444566777787634558
Q ss_pred HHHHHHHHHHH
Q 002400 382 VQAHAASAVLN 392 (927)
Q Consensus 382 v~~~a~~al~~ 392 (927)
|+..+..+|-.
T Consensus 281 vavk~lealf~ 291 (892)
T KOG2025|consen 281 VAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHHH
Confidence 88777777655
No 184
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.60 E-value=0.43 Score=46.49 Aligned_cols=114 Identities=19% Similarity=0.296 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD 375 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~ 375 (927)
--.|+.|++.|..+.. ..-+..+..++.+++...|..+..++|++-. +..+|.|.+.|.
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLL 228 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHH
Confidence 3467788888865532 3456778889999999999999999999854 234566666665
Q ss_pred CC-CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 376 DF-QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 376 ~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
+. .++-||..|+.+|+.+.. +..++.|...+++..+-|++.|..++...-..-+.
T Consensus 229 d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~ 284 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSK 284 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccc
Confidence 52 368999999999998853 23456677778888899999888887776544433
No 185
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.16 Score=51.91 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=97.2
Q ss_pred hHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH-HH
Q 002400 588 VLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESY-VK 666 (927)
Q Consensus 588 ~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~ 666 (927)
.+++|..|++-|..++..+.....=.--..+..++.++.+. +..+|..|+.+++.++++- +.. ..
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNN-------------P~~Qe~ 161 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNN-------------PKSQEQ 161 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcC-------------HHHHHH
Confidence 35678889888888888776532111112334445577764 8999999999999998762 111 11
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH-hHHHHHHHHccC
Q 002400 667 QLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD-TYLPFLLEACND 745 (927)
Q Consensus 667 ~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~d 745 (927)
-+-...++.|+..+..+ .+...|..|+++++.++....+....+++ .=+..|...+.+
T Consensus 162 v~E~~~L~~Ll~~ls~~---------------------~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSD---------------------DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHcccHHHHHHHHccC---------------------CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc
Confidence 11223566777777654 45778899999999999998877666544 224556666766
Q ss_pred --CChhHHhhHhHHHHHHHhhcC
Q 002400 746 --KHPDVRQAAVYGIGVCAEFGG 766 (927)
Q Consensus 746 --~~~~vr~~a~~~lg~l~~~~~ 766 (927)
.+...+.-+++.++.+.+...
T Consensus 221 ~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 221 NNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred CCcchHHHHHHHHHHHHHHHhhh
Confidence 566777888888888887644
No 186
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.53 E-value=1.9 Score=48.23 Aligned_cols=262 Identities=15% Similarity=0.122 Sum_probs=134.6
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCC-CCCccch
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLP-DGDWPEL 144 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~-~~~w~~l 144 (927)
+.+.++|+.+.-+|...+... .... ...|..++..+.....+..-....+++..+.+..-. .+--.++
T Consensus 40 ~~p~e~R~~~~~ll~~~i~~~------~~~~-----~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i 108 (464)
T PF11864_consen 40 NQPSEARRAALELLIACIKRQ------DSSS-----GLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEI 108 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHcc------cccc-----HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccch
Confidence 667899999999999999876 2211 235666677776554443333444455555443211 1223456
Q ss_pred HHHHHHHhcCC---------------------------ChHHHHHHHHHHHHhhhhhHHHHH-HhHHHHHHHHHhhhC-C
Q 002400 145 IPFIFQCLVTF---------------------------NDKIQESALLILSRMSQFVSEVLI-AHGDTLHEVFSKFLG-S 195 (927)
Q Consensus 145 l~~l~~~l~s~---------------------------~~~~r~~al~~l~~l~~~~~~~l~-~~~~~l~~~l~~~l~-~ 195 (927)
.|.+...+..- +...-...+..+..+++.-...+. ..+..++..+..... .
T Consensus 109 ~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~T 188 (464)
T PF11864_consen 109 GPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKST 188 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 66666554210 000011111122222221111111 234445554444432 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 002400 196 NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVG 275 (927)
Q Consensus 196 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~ 275 (927)
.++..-..++..+..++ .+-. .-.+-++.++..|....... +....+-+.+..+++..- -...+.
T Consensus 189 s~~~di~~~L~vldaii-~y~~------iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~------g~~~i~ 253 (464)
T PF11864_consen 189 SSEDDIEACLSVLDAII-TYGD------IPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL------GHSAIR 253 (464)
T ss_pred CcHHHHHHHHHHHHHHH-HcCc------CChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc------HHHHHH
Confidence 34444456677777766 4211 11234555666666654332 333444455555554321 123445
Q ss_pred HHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHh--hHH--HHHHHHHhccCCCCHHHHHHHHHHHHHhH
Q 002400 276 SMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIK--NLD--QVVSMVLNSFQDPHPRVRWAAINAIGQLS 351 (927)
Q Consensus 276 ~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~--~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 351 (927)
.|+.++.++ ..-...+.+.-++|+..++.+.-+.++.-.+ .+. .+++.+...++..++.|-...+..+..+.
T Consensus 254 ~L~~iL~~~----~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 254 TLCDILRSP----DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHccc----CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 555444211 0111356777789999999888776331111 122 48899999998888888777777777776
Q ss_pred -hhhchh
Q 002400 352 -TDLGPE 357 (927)
Q Consensus 352 -~~~~~~ 357 (927)
..++..
T Consensus 330 ~~~~~~~ 336 (464)
T PF11864_consen 330 DGKYGRE 336 (464)
T ss_pred hHhhhhh
Confidence 444443
No 187
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.075 Score=55.11 Aligned_cols=133 Identities=15% Similarity=0.213 Sum_probs=112.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400 325 VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP 404 (927)
Q Consensus 325 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 404 (927)
+..++..+++.+..||..|...+..+... .+.....+...+++.+...+.| .+..||.....++..++....++.+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 44566778899999999999999988876 3443355677889999999999 899999999999999887776677899
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILV 459 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~ 459 (927)
+...++..+..++.+..+.+|..++..+..++...++.|..+...+++.+...+.
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887777666666665544
No 188
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.46 E-value=3.1 Score=49.80 Aligned_cols=257 Identities=16% Similarity=0.150 Sum_probs=131.4
Q ss_pred CCcc--chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHH---------HHhhhCCC-CHHHHHHHH
Q 002400 139 GDWP--ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA-HGDTLHEV---------FSKFLGSN-NFDLRIAAL 205 (927)
Q Consensus 139 ~~w~--~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~---------l~~~l~~~-~~~vr~~a~ 205 (927)
++|| .++..|...+-+++...|+++...+..+.+..+..+.. .++.++-. +-....++ -..||.+..
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4786 46667777777899999999999999998776543221 12222211 22222322 346899999
Q ss_pred HHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccC
Q 002400 206 EATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEA 285 (927)
Q Consensus 206 ~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~ 285 (927)
++|..++ .++. ...+...++.+.+++..+.++.+...+..+..........+...++.+++.+
T Consensus 151 q~L~~~l-~~~~--------~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~-------- 213 (1549)
T KOG0392|consen 151 QALGAYL-KHMD--------ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFV-------- 213 (1549)
T ss_pred HHHHHHH-Hhhh--------hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 9999988 6552 2233334445555554455665544443332222111122223333444433
Q ss_pred chhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhHhhhc-hhH--H
Q 002400 286 VFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF---QDPHPRVRWAAINAIGQLSTDLG-PEL--Q 359 (927)
Q Consensus 286 ~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~-~~~--~ 359 (927)
.++++|.+-.+|..|...+-.++....+.....+..++..+...+ .|-.+..- .....+..++.... -++ +
T Consensus 214 --i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~-si~~ll~~l~~~~evl~l~~~ 290 (1549)
T KOG0392|consen 214 --IEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTA-SIMHLLDELCIENEVLDLFEQ 290 (1549)
T ss_pred --HhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhH-HHHHHHHHHhhhHHHHHHHHH
Confidence 366777676777776666665555444444444555554444332 22222110 01111122221110 000 0
Q ss_pred HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc--ccCchHHHHHHHHHH
Q 002400 360 TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI--LTPYLDGIVSKLLVL 416 (927)
Q Consensus 360 ~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~--~~~~l~~l~~~L~~~ 416 (927)
......+.|.+...+.+ .-..++.+++..+..+.+.-+... -.+.+..++..+.+.
T Consensus 291 ~n~~~~Lvp~~~p~l~~-~i~sv~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ 348 (1549)
T KOG0392|consen 291 QNLEVGLVPRLWPFLRH-TISSVRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQI 348 (1549)
T ss_pred hhhhhccchhhHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHH
Confidence 11223455555555555 445688888888888876543322 123344555555443
No 189
>PF05536 Neurochondrin: Neurochondrin
Probab=96.43 E-value=2.4 Score=48.20 Aligned_cols=181 Identities=17% Similarity=0.159 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHHHhhhCCCCH-HHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHH
Q 002400 157 DKIQESALLILSRMSQFVSEVL--IAHGDTLHEVFSKFLGSNNF-DLRIAALEATVNFIMNCLPSLGEKERF--LDLLPL 231 (927)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l--~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ 231 (927)
...+..|+.+|+.++. ++.+ .+.+-.-+|.+.+.+...+. .+...++.+|..++ .+ ..+ ...+ ..-+|.
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~--~~G-~~aLl~~g~v~~ 144 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SS--PEG-AKALLESGAVPA 144 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cC--cHh-HHHHHhcCCHHH
Confidence 4667889999999987 3333 24566678889988887755 89999999999998 42 111 2222 234666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHccCc-HHH---HHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHH
Q 002400 232 MMRTLTEALNKGNESSAQEALELLIELAATEP-RFL---RKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALA 307 (927)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~---~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~ 307 (927)
+.+.+.+ .+.....++..|..++.... +.. ...+..+++.+. ..++...-..|...+..|+
T Consensus 145 L~ei~~~-----~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La----------~~fs~~~~~~kfell~~L~ 209 (543)
T PF05536_consen 145 LCEIIPN-----QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLA----------RDFSSFHGEDKFELLEFLS 209 (543)
T ss_pred HHHHHHh-----CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH----------HHHHhhccchHHHHHHHHH
Confidence 6665553 34455677777877764422 111 122334444443 2222223334555566777
Q ss_pred HHhhhchH------HHHhhHHHHHHHHHhccCC-CCHHHHHHHHHHHHHhHhhhchhH
Q 002400 308 QIAEGCSK------VMIKNLDQVVSMVLNSFQD-PHPRVRWAAINAIGQLSTDLGPEL 358 (927)
Q Consensus 308 ~i~~~~~~------~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 358 (927)
.+...++. .-...+..+...+...+++ ..+.-|..++...+.+.+.+|++.
T Consensus 210 ~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 210 AFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred HhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 76665531 1123455666666666655 467789999999999998877654
No 190
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.41 E-value=0.062 Score=55.45 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=114.3
Q ss_pred CcchhHHHHHH-HHHHHHhh-hc-hHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhH---HH--HhHh
Q 002400 293 APEWQKHHAVL-IALAQIAE-GC-SKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPEL---QT--QFHH 364 (927)
Q Consensus 293 ~~~~~~r~aal-~al~~i~~-~~-~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~--~~~~ 364 (927)
.+.|+...+.. ..+..+.. .. ...+..+++-++|.++..+.|.++.+|..++.++..+.+.+.... .. ...+
T Consensus 86 ~~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~ 165 (282)
T PF10521_consen 86 RQPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFS 165 (282)
T ss_pred cCCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHH
Confidence 34687665322 34443333 32 235668899999999999999999999999999999998775443 11 2344
Q ss_pred hHHHHHHHhcc--------CCCCchHHHHHHHHHHHhHhcCCCcc---ccCchHHHH-HHHHHHhcCC----ChhHHHHH
Q 002400 365 RLLPALVGAMD--------DFQNPRVQAHAASAVLNFSENCTPDI---LTPYLDGIV-SKLLVLLQNG----KQMVQEGA 428 (927)
Q Consensus 365 ~il~~ll~~l~--------~~~~~~v~~~a~~al~~l~~~~~~~~---~~~~l~~l~-~~L~~~l~~~----~~~v~~~a 428 (927)
.+.+.+..++. + ++..+-..+..++..++....... -...+..++ +.++..+... ...++...
T Consensus 166 v~~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 166 VFEDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred HHHHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 45555555555 3 566777888888888865431111 112233333 3244443322 36788899
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc
Q 002400 429 LTALASVADSSQGQFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 429 ~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 460 (927)
+..+..++...|.....|++.++|.+.+.+++
T Consensus 245 l~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998765
No 191
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=96.38 E-value=2.1 Score=47.02 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=103.4
Q ss_pred chhHHHHHHHHHHHHhhhchHHHH-hhHHHHHHHHH-----hccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMI-KNLDQVVSMVL-----NSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~-~~l~~l~~~l~-----~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+|..-..-++|+|+++....+... ..+-.++..++ +..+|....|.......+|++-..+.... .++..++.
T Consensus 496 sw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw--~FLkTVv~ 573 (1053)
T COG5101 496 SWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHW--SFLKTVVK 573 (1053)
T ss_pred chhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHH--HHHHHHHH
Confidence 578888899999999877665332 33334444332 45567677777777888888766654443 68888999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc-------ccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
.|.+.+.. .+..|+..||..+-.+++.|+.+. -+|++..++..+-+.-.+-.+.-+..-+.|.|.+....+.
T Consensus 574 KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 574 KLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred HHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccch
Confidence 99998888 889999999999999999986422 3577888887777666555565556667777777765553
No 192
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=2.7 Score=47.59 Aligned_cols=199 Identities=16% Similarity=0.199 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC--cHHHHHHHHHHH
Q 002400 197 NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE--PRFLRKQLVDVV 274 (927)
Q Consensus 197 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~l~~ll 274 (927)
-.+=|..|++.|-.|. +.+ ....-..-++++++.+.. ...|++....+++.+..+..++ |....
T Consensus 36 L~eDRR~A~rgLKa~s-rkY----R~~Vga~Gmk~li~vL~~--D~~D~E~ik~~LdTl~il~~~dd~~~v~d------- 101 (970)
T KOG0946|consen 36 LLEDRRDAVRGLKAFS-RKY----REEVGAQGMKPLIQVLQR--DYMDPEIIKYALDTLLILTSHDDSPEVMD------- 101 (970)
T ss_pred chhhHHHHHHHHHHHH-HHH----HHHHHHcccHHHHHHHhh--ccCCHHHHHHHHHHHHHHHhcCcchhhcc-------
Confidence 4456888888888888 332 112233456777777764 2236777777777766655432 11110
Q ss_pred HHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 275 GSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 275 ~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
++. ..-.-+.+.-..+.. -+..+..++..+..-+-.||+.+...+..+...-
T Consensus 102 ------------------ds~-qsdd~g~~iae~fik---------~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 102 ------------------DST-QSDDLGLWIAEQFIK---------NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR 153 (970)
T ss_pred ------------------cch-hhhHHHHHHHHHHHc---------CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC
Confidence 100 010111111001110 1235566666777778899999999999998887
Q ss_pred chhHHH--HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC--chHHHHHHHHHHhcCCC----hhHHH
Q 002400 355 GPELQT--QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP--YLDGIVSKLLVLLQNGK----QMVQE 426 (927)
Q Consensus 355 ~~~~~~--~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~l~~l~~~L~~~l~~~~----~~v~~ 426 (927)
+.+.+. ..++.-+..++..+.| ....+|..+...|..+.+.++. ++. -++.++..|+..+.... .-|.+
T Consensus 154 ~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~--IQKlVAFENaFerLfsIIeeEGg~dGgIVve 230 (970)
T KOG0946|consen 154 PTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSS--IQKLVAFENAFERLFSIIEEEGGLDGGIVVE 230 (970)
T ss_pred CHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCch--HHHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 776643 3466778888899999 8888999999999999988763 333 35678888888886542 35777
Q ss_pred HHHHHHHHHHHHhh
Q 002400 427 GALTALASVADSSQ 440 (927)
Q Consensus 427 ~a~~al~~l~~~~~ 440 (927)
.|+..+..+.+.-.
T Consensus 231 DCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 231 DCLILLNNLLKNNI 244 (970)
T ss_pred HHHHHHHHHHhhCc
Confidence 88888888775443
No 193
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.31 E-value=0.17 Score=53.34 Aligned_cols=203 Identities=21% Similarity=0.213 Sum_probs=113.7
Q ss_pred ChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 002400 51 HPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVS 129 (927)
Q Consensus 51 ~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~ 129 (927)
+.+.+...++.++.+ +.++++.+....++-..+...+........+........-..++..+.+. +..++..++.+++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt 130 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILT 130 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 344466667777766 48999999999999998876522111111222212222556777766665 9999999999999
Q ss_pred HHHhccCCCCCcc---chHHHHHHHhcC----CChHHHHHHHHHHHHhhhhhH--HHHHHhHHHHHHHHHhhh-----CC
Q 002400 130 ELAASVLPDGDWP---ELIPFIFQCLVT----FNDKIQESALLILSRMSQFVS--EVLIAHGDTLHEVFSKFL-----GS 195 (927)
Q Consensus 130 ~ia~~~~~~~~w~---~ll~~l~~~l~s----~~~~~r~~al~~l~~l~~~~~--~~l~~~~~~l~~~l~~~l-----~~ 195 (927)
.++..... ..-. +.++.+++.+.+ ++.+.+..++.+|..+...-. ..+.. ...++.+...+ .+
T Consensus 131 ~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~ 207 (312)
T PF03224_consen 131 SLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNS 207 (312)
T ss_dssp HHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH------
T ss_pred HHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccC
Confidence 99987654 2223 678888877764 344566888999998875422 22222 44555555555 22
Q ss_pred C--CHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 196 N--NFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 196 ~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
. +.++.+.++-|+..+. |+. .....+ ..++|.+++.+.. ...|.+.+-++.++.++++..++
T Consensus 208 ~~~~~Ql~Y~~ll~lWlLS---F~~-~~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 208 NSSGIQLQYQALLCLWLLS---FEP-EIAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ---HHHHHHHHHHHHHHHT---TSH-HHHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred CCCchhHHHHHHHHHHHHh---cCH-HHHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHH
Confidence 2 5677788877766544 321 111222 2366777777665 34688889999999999987654
No 194
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.28 E-value=0.067 Score=49.52 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=86.4
Q ss_pred cccH--HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHHHHHH--HHccC
Q 002400 611 FPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAV---EKGQSQGRNESYVKQLTDYIIPALVE--ALHKE 683 (927)
Q Consensus 611 ~~~~--~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~il~~ll~--~l~~e 683 (927)
.||. +++++.++..+....++++|..+++++|.+-.--.... ..+..... .....+...+..+- .....
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ 78 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS----SENSNDESTDISLPMMGISPS 78 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc----cccccccchhhHHhhccCCCc
Confidence 3553 67888888888877789999999999998732110000 00000000 00000000000010 01001
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHh
Q 002400 684 PEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAE 763 (927)
Q Consensus 684 ~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~ 763 (927)
.|.-.-.-++.++-.+++ +......+..++.++..+++..|..+.+|+++++|.+++.++..++..|+...+-|+.++.
T Consensus 79 ~ee~y~~vvi~~L~~iL~-D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILR-DPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 111122223333333332 1233455667888889999999999999999999999999997777888888888887764
No 195
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.26 E-value=0.066 Score=50.21 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHH-HHhh-ccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHH------
Q 002400 247 SAQEALELLIELAAT-EPRFLRKQLVDVVGSML-QVAE-AEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVM------ 317 (927)
Q Consensus 247 ~~~~a~~~l~~l~~~-~~~~~~~~l~~ll~~ll-~~~~-~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~------ 317 (927)
++..|+.++..+++. +++.+..+-..++|.-. +-.. ...++.-.+.|++.+.|.+|+.++..+.+|....+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456788888888887 77777777777777540 0000 01344556778999999999999999999875521
Q ss_pred ----------HhhHH----HHHHHHHhccCC-CCHHHHHHHHHHHHHhHhhhchh-HHHHhHhhHHHHHHHhccCCCCch
Q 002400 318 ----------IKNLD----QVVSMVLNSFQD-PHPRVRWAAINAIGQLSTDLGPE-LQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 318 ----------~~~l~----~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
...+. ++-..+...++. .++.+-...++|++.+....+.. +...++..++..+...+.+ .++.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~-~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH-RDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc-CCCc
Confidence 11222 233444555544 47778889999999998876432 2245777778888888888 8899
Q ss_pred HHHHHHHHHHHhHhcC
Q 002400 382 VQAHAASAVLNFSENC 397 (927)
Q Consensus 382 v~~~a~~al~~l~~~~ 397 (927)
|+..+..+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887543
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=0.34 Score=56.13 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=104.4
Q ss_pred chhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHH-HHHHHHhccCC-C--CHHHHHHHHHHHHHhHhhhchhHHHH
Q 002400 286 VFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQ-VVSMVLNSFQD-P--HPRVRWAAINAIGQLSTDLGPELQTQ 361 (927)
Q Consensus 286 ~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~-l~~~l~~~l~d-~--~~~vr~~a~~~l~~~~~~~~~~~~~~ 361 (927)
++-++++++....|-.-++....|..--+..-.+.+.+ .-...++.|.+ + ++.-|..|+..|+.+...+.-.-..-
T Consensus 516 YVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ac 595 (1387)
T KOG1517|consen 516 YVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKAC 595 (1387)
T ss_pred HHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHh
Confidence 33466677667777666666555544222100011111 11122333333 1 45789999999999999875433234
Q ss_pred hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 362 FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 362 ~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
+-.+++...+..++|.+.+-.|.=+|.+|+.+-++.......-.-....+.|...+.++.+.||.+|+.|+|++.....+
T Consensus 596 l~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 596 LNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred ccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc
Confidence 55678888889999833688999999999999988764333233345667888888999999999999999999986544
Q ss_pred hh
Q 002400 442 QF 443 (927)
Q Consensus 442 ~~ 443 (927)
.|
T Consensus 676 ~f 677 (1387)
T KOG1517|consen 676 NF 677 (1387)
T ss_pred cc
Confidence 43
No 197
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=5.1 Score=49.37 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=60.9
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHH
Q 002400 704 DKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPL 772 (927)
Q Consensus 704 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~ 772 (927)
+++...|-.|+..+.-+....|+...+.+++.+|.+-+.+.|.+..|...+...+..+-...|+.+..|
T Consensus 1552 ss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1552 SSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred cccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 356789999999999999999999999999999999999999999998888887777777778766655
No 198
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.09 E-value=0.35 Score=52.82 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=128.5
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCch
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLG 220 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~ 220 (927)
..++..|+.++.|+|+..|.....++..+...+......-...+...|.+.+... ...--...++.+++++ ..+..+-
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii-~gf~~pl 210 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSII-NGFAVPL 210 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHH-TT--SS-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH-hccCCCC
Confidence 4788899999999999999999999998887665432222334444555554433 3334456778888888 5543211
Q ss_pred hHHhHHhhHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHH
Q 002400 221 EKERFLDLLPLMMRTLTEALNKGN-ESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKH 299 (927)
Q Consensus 221 ~~~~~~~~~p~ll~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r 299 (927)
. ......+.+.+..+...+. ..-..+-..++..+++.+|......+..++... --.+....
T Consensus 211 k----~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W--------------P~t~s~Ke 272 (409)
T PF01603_consen 211 K----EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW--------------PKTNSQKE 272 (409)
T ss_dssp -----HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS---------------SS-HHHH
T ss_pred c----HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC--------------CCCCchhH
Confidence 1 1111112222222222211 111223334444555555555544444443321 01222333
Q ss_pred HHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHH--hHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 300 HAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQ--LSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 300 ~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
..-+.-+..+.+.++ ..+......++..+..+++++|..|-..|+..+.. +...+ ..+...++|.+...+..
T Consensus 273 v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li-----~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 273 VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI-----SQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH-----HCTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH-----HhChHHHHHHHHHHHHH
Confidence 344556677777655 34556677888888899999999999888876542 22221 34445566666666543
Q ss_pred ----CCCchHHHHHHHHHHHhHhc
Q 002400 377 ----FQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 377 ----~~~~~v~~~a~~al~~l~~~ 396 (927)
+=+..||..|+.++..+.+.
T Consensus 348 ~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 348 NSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp TTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Confidence 12567999999998888653
No 199
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.09 E-value=1.5 Score=45.35 Aligned_cols=238 Identities=17% Similarity=0.115 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC-C
Q 002400 119 SIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN-N 197 (927)
Q Consensus 119 ~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~-~ 197 (927)
.-|+-.+++-..+...+.. .+|.+++..|..+.+ ++. -........|+-..+...+.+|++-. .
T Consensus 4 k~kky~~~v~k~L~~Fe~~-~EWAD~is~L~kL~k---------~lq-----~~~~~~~~IP~k~~v~krLaqCL~P~LP 68 (307)
T PF04118_consen 4 KYKKYNAEVEKALKSFESS-SEWADYISFLGKLLK---------ALQ-----NSNNQFPYIPHKLQVSKRLAQCLNPALP 68 (307)
T ss_pred HHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHH---------HHh-----ccCCCCceeCcHHHHHHHHHHhcCCCCC
Confidence 3344444444445555553 799999888776532 111 00001122334456778888888866 6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Q 002400 198 FDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSM 277 (927)
Q Consensus 198 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~l 277 (927)
..|-..|++....++ +.+....-...+.-+.|.+++.+... .-.++...++++....-.-+..+++.++.++..+
T Consensus 69 sGVH~KaLevY~~IF-~~ig~~~L~~dl~i~~~GLfpl~~~a----si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~sl 143 (307)
T PF04118_consen 69 SGVHQKALEVYEYIF-ERIGPDGLAQDLPIYSPGLFPLFSYA----SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSL 143 (307)
T ss_pred hHHHHHHHHHHHHHH-HhcCHHHHHhhcHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 789999999999888 76643221222333445555555432 2334445555554443333346777777777766
Q ss_pred HHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc--
Q 002400 278 LQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG-- 355 (927)
Q Consensus 278 l~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-- 355 (927)
+ ..+.+++-..-+.++..+..+...+++. .+...++..+- .+|.+|..|+..+.+-.....
T Consensus 144 L----------pGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~ 206 (307)
T PF04118_consen 144 L----------PGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQND 206 (307)
T ss_pred c----------cccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCccccc
Confidence 6 3333444455555666676666655541 23333333332 478888888877765433322
Q ss_pred -----hh----HHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 356 -----PE----LQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 356 -----~~----~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
.+ +...--.-++..+..+++| ++.-|++.+...|....
T Consensus 207 ~~~~~~~~~~~~~~~~~~Llv~al~~~L~D-~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 207 ELSLSSEEQEYCLGPDPGLLVRALCACLED-ENILVQRGFLDLLLSHF 253 (307)
T ss_pred ccccchHHHHHhcCCCccHHHHHHHHHhCC-chHHHHHHHHHHHHHhC
Confidence 00 1012234477888888999 78888888877765554
No 200
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.08 E-value=3.2 Score=46.24 Aligned_cols=107 Identities=16% Similarity=0.232 Sum_probs=84.2
Q ss_pred hhhhhCCcchhHHHHHHHHHHHHhhhchH--HH----HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHH
Q 002400 287 FPGFLAAPEWQKHHAVLIALAQIAEGCSK--VM----IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQT 360 (927)
Q Consensus 287 i~~~l~~~~~~~r~aal~al~~i~~~~~~--~~----~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 360 (927)
+.+++.++....|.+.+.+++.+.+.... .+ +..+..++..+...+.|.+|.+|.-|+..+..++..-... .
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~--~ 381 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT--V 381 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc--c
Confidence 33667788999999999999998876432 23 3456678889999999999999999999999988643221 2
Q ss_pred HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhc
Q 002400 361 QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 361 ~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~ 396 (927)
.-...+...+..+++| .+..||..|.+.+..+.-.
T Consensus 382 ~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 382 GRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred chHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhc
Confidence 3445788888999999 9999999999988877643
No 201
>PF05536 Neurochondrin: Neurochondrin
Probab=96.07 E-value=3.6 Score=46.74 Aligned_cols=238 Identities=12% Similarity=0.095 Sum_probs=147.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHccCcH--HH-HHHHHHHHHHHHHHhhccCchhhhhCC-------cchhHHHHH
Q 002400 233 MRTLTEALNKGNESSAQEALELLIELAATEPR--FL-RKQLVDVVGSMLQVAEAEAVFPGFLAA-------PEWQKHHAV 302 (927)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~--~~-~~~l~~ll~~ll~~~~~~~~i~~~l~~-------~~~~~r~aa 302 (927)
++.+..++.+.++..+..++-.+..++...+. .. +...+.+=+ +|+..++.. +.-..+.-|
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~---------~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGF---------KFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCh---------hHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 34444455555655666677777766654321 11 111121111 233344432 223455566
Q ss_pred HHHHHHHhhhchH-HHHhhHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc
Q 002400 303 LIALAQIAEGCSK-VMIKNLDQVVSMVLNSFQDPHP-RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP 380 (927)
Q Consensus 303 l~al~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~ 380 (927)
+..|++.+. .++ .-.+.+-.-+|.++..+..... .+..-|..||..++. .+.....-.-...++.+.+.+.+ .+
T Consensus 78 vsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~--~~ 153 (543)
T PF05536_consen 78 VSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN--QS 153 (543)
T ss_pred HHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh--Cc
Confidence 666666665 222 1124566678888888866665 888888999998884 33333223445688888888876 67
Q ss_pred hHHHHHHHHHHHhHhcCCCcccc---CchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh------hhHHhHHHHH
Q 002400 381 RVQAHAASAVLNFSENCTPDILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG------QFQKYYDAVM 451 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~~~~~~---~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~------~~~~~~~~i~ 451 (927)
...+.|...+..++...+.+... ..+..++..+-..+.......+-.++..++.+....+. .-......+.
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 77889999998888776543322 23445666666666666666677778888888766631 1234677888
Q ss_pred HHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCc
Q 002400 452 PYLKAILVNANDKSNRMLRAKSMECISLVGMAVGK 486 (927)
Q Consensus 452 ~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~ 486 (927)
..+..+++... ...-|..++...+.+....|.
T Consensus 234 ~gl~~iL~sr~---~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 234 KGLRDILQSRL---TPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhCh
Confidence 88888887643 355688888888888888874
No 202
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.07 E-value=0.32 Score=52.49 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=112.2
Q ss_pred HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhc----CChhHHHHHHH
Q 002400 178 LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNK----GNESSAQEALE 253 (927)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~----~~~~~~~~a~~ 253 (927)
+.-|++.+...+.. .++..|..|+.+|.. + ..++.++|.+...+.+-+.. .+-......+.
T Consensus 205 lQlYy~~It~a~~g----~~~~~r~eAL~sL~T-------D----sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~ 269 (576)
T KOG2549|consen 205 LQLYYKEITEACTG----SDEPLRQEALQSLET-------D----SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMR 269 (576)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHhhcc-------C----ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHH
Confidence 33456666665554 678899998866543 1 23667888888777664432 24445556677
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC
Q 002400 254 LLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ 333 (927)
Q Consensus 254 ~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~ 333 (927)
....+..++.-++.+|+..++|.++.++-.+.....-..|.+|..|.-|...+..+....++.....-+.+...+.+.+.
T Consensus 270 m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 270 MVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALL 349 (576)
T ss_pred HHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 77788888777889999999998886542211111112356799999999999999998888766666788888888888
Q ss_pred CC--CHHHHHHHHHHHHHhHh
Q 002400 334 DP--HPRVRWAAINAIGQLST 352 (927)
Q Consensus 334 d~--~~~vr~~a~~~l~~~~~ 352 (927)
|+ .+.-++.++..|..+..
T Consensus 350 D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 350 DNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CCCCCchhhhhHHHHHHHhhh
Confidence 76 45678888888888765
No 203
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.02 E-value=0.071 Score=45.43 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=73.2
Q ss_pred HHhhHHHHHHHHHhccCC----CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHH
Q 002400 317 MIKNLDQVVSMVLNSFQD----PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392 (927)
Q Consensus 317 ~~~~l~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~ 392 (927)
+.+++-.++..+-..+.| ....-|..++.+++.+.+..++.+ ..+.++++-.|...+.. +.++..++.+...
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-~~~~pQI~a~L~sal~~---~~l~~~al~~W~~ 80 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-SSARPQIMACLQSALEI---PELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhCC---hhhHHHHHHHHHH
Confidence 345555556655555555 344568999999999999554444 56667777777666666 5899999999999
Q ss_pred hHhcCCCccccCchHHHHHHHHHHhc
Q 002400 393 FSENCTPDILTPYLDGIVSKLLVLLQ 418 (927)
Q Consensus 393 l~~~~~~~~~~~~l~~l~~~L~~~l~ 418 (927)
|+..++.+.+.|+++.++..+++.++
T Consensus 81 fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888888888888777654
No 204
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.99 E-value=0.059 Score=45.49 Aligned_cols=98 Identities=19% Similarity=0.316 Sum_probs=73.9
Q ss_pred HHHhhHHHHHHHHHhccCCCC---H-HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHH
Q 002400 316 VMIKNLDQVVSMVLNSFQDPH---P-RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVL 391 (927)
Q Consensus 316 ~~~~~l~~l~~~l~~~l~d~~---~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~ 391 (927)
.+.+++-.++..+...+.|.+ | .-|..++.+++.+.+..++.+ ..+.++++-.|...+.. +..|..|+.+..
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence 345666667777777777766 2 338999999999999776655 66777777777777776 679999999999
Q ss_pred HhHhcCCCccccCchHHHHHHHHHHh
Q 002400 392 NFSENCTPDILTPYLDGIVSKLLVLL 417 (927)
Q Consensus 392 ~l~~~~~~~~~~~~l~~l~~~L~~~l 417 (927)
.|+...+.+.+.|.++.++..+++.+
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99999987777677776666665543
No 205
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.93 E-value=0.24 Score=48.75 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=103.1
Q ss_pred HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhc--CChhHHHHHHHH
Q 002400 177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNK--GNESSAQEALEL 254 (927)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~--~~~~~~~~a~~~ 254 (927)
.+.-|++.++..+ +...+.+.|.+|+.++..= ..++.++|.++..+..-+.. ++-......+..
T Consensus 194 ELq~YF~kvisal---~dEs~~~~r~aAl~sLr~d-----------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m 259 (450)
T COG5095 194 ELQMYFDKVISAL---LDESDEQTRDAALESLRND-----------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMM 259 (450)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC-----------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444556655554 2334778999998765431 23566777777766654432 234445556667
Q ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhC-----CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHH
Q 002400 255 LIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLA-----APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVL 329 (927)
Q Consensus 255 l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~-----~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~ 329 (927)
...+.++..-|+.|++.+++|.++.++-. .-+. ++....|.-|...++.+...++......-+++...++
T Consensus 260 ~~sLL~N~~iFvdPY~hqlmPSilTclia-----kklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 260 YSSLLKNKYIFVDPYLHQLMPSILTCLIA-----KKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHhcCCceeecHHHHHHHHHHHHHHHH-----HHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 77777777677788888888887754311 1111 2346788889999999988888766666677777777
Q ss_pred hccCCCC--HHHHHHHHHHHHHhHhh
Q 002400 330 NSFQDPH--PRVRWAAINAIGQLSTD 353 (927)
Q Consensus 330 ~~l~d~~--~~vr~~a~~~l~~~~~~ 353 (927)
+.+-|.+ ....+.|+.+++.+...
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhchh
Confidence 7665532 34578888888887754
No 206
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.91 E-value=2.1 Score=42.75 Aligned_cols=212 Identities=13% Similarity=0.088 Sum_probs=129.0
Q ss_pred HHHHHh-hhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 186 HEVFSK-FLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 186 ~~~l~~-~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
++.++. .-+..++.+....+++|..++ .+- . ...|.+++.+..+.+.+..+....+...+..+-+..+.
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~-~~~--------~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r 71 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLA-CHK--------N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR 71 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHh-ccC--------c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch
Confidence 344444 334458999999999999998 321 2 57888889988888766665545566666666666555
Q ss_pred HHHHHHHHHHHHH-HHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc-CCCCHHHHHH
Q 002400 265 FLRKQLVDVVGSM-LQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWA 342 (927)
Q Consensus 265 ~~~~~l~~ll~~l-l~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~vr~~ 342 (927)
.+ +.+..++... ++.... ..-.+..|....+...++..++...++ +-.++++.+...+ ++.++.++..
T Consensus 72 ~f-~~L~~~L~~~~~r~~~~-----~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~al 141 (234)
T PF12530_consen 72 HF-PFLQPLLLLLILRIPSS-----FSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQAL 141 (234)
T ss_pred HH-HHHHHHHHHHHhhcccc-----cCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHH
Confidence 44 3444333321 111000 001245688888877888888877665 5556777777777 7888899999
Q ss_pred HHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC-CCccccCchHHHHHHHHHHhcCCC
Q 002400 343 AINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC-TPDILTPYLDGIVSKLLVLLQNGK 421 (927)
Q Consensus 343 a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~l~~l~~~L~~~l~~~~ 421 (927)
++.++..+++.--.++ ......+.+.++....|.|....|..+..+.... ..+....+...++..+-+.....+
T Consensus 142 ale~l~~Lc~~~vvd~-----~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 142 ALEALAPLCEAEVVDF-----YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHHHHhhccH-----HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 9999999986433333 2334444555554356777666665555443221 122223345566666666666555
Q ss_pred h
Q 002400 422 Q 422 (927)
Q Consensus 422 ~ 422 (927)
.
T Consensus 217 ~ 217 (234)
T PF12530_consen 217 V 217 (234)
T ss_pred c
Confidence 3
No 207
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=7.4 Score=48.98 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHh
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNE--TNKSIIKKICDAVSELAA 133 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~--~~~~vr~~~~~~i~~ia~ 133 (927)
...|...+.+...+++|++.++.+.+.++. |..++....-. .+-..+.+. +++.-...+..+++....
T Consensus 53 ~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-------gd~f~~~~~l~---~c~d~l~d~~~~~~q~k~~a~~~l~~~y~ 122 (2067)
T KOG1822|consen 53 EQQLISRLTNGAGPPTRKLISVAIARLISN-------GDSFSLYSRLN---SCNDFLSDGSPSDPQRKLAALSCLGSLYE 122 (2067)
T ss_pred HHHHHHHHccCCCchhHHHHHHHHHHHHhc-------cchhhHHHHHH---HhhhhhhcCCCccHHHHHhhccchHHHHH
Confidence 367888888889999999999999998865 55554433322 222223322 344444455566776665
Q ss_pred ccCCC-C-CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 002400 134 SVLPD-G-DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE--VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATV 209 (927)
Q Consensus 134 ~~~~~-~-~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~--~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~ 209 (927)
+..+. + ...+.+..+..+.+..+.-.|...+.++...+...+. ........+.-.....+.+.+..||.+|.+|+.
T Consensus 123 ~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~ 202 (2067)
T KOG1822|consen 123 HYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLK 202 (2067)
T ss_pred HhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHH
Confidence 54431 1 2456666666666666667777788888887776652 222234555666666777777779999999988
Q ss_pred HHH
Q 002400 210 NFI 212 (927)
Q Consensus 210 ~l~ 212 (927)
.+.
T Consensus 203 a~s 205 (2067)
T KOG1822|consen 203 AFS 205 (2067)
T ss_pred HHH
Confidence 876
No 208
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=4.2 Score=45.17 Aligned_cols=260 Identities=18% Similarity=0.213 Sum_probs=173.5
Q ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCH
Q 002400 20 AHFETLISNL-MSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAP 98 (927)
Q Consensus 20 ~~l~~~L~~~-~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~ 98 (927)
.+++.+=..+ .+.|+..|.+||..|.++.. .|+ ++..+.-++..+..+-....|+..|-+.++++ ..++.
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-------t~lpl 75 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-------TPLPL 75 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-------CCCcH
Confidence 3444444455 57799999999999999998 687 77777778887888888999999999999886 47999
Q ss_pred hHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHhccCCCC-----CccchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 002400 99 STQANLKSVLLVQLQNE---TNKSIIKKICDAVSELAASVLPDG-----DWPELIPFIFQCLVTFNDKIQESALLILSRM 170 (927)
Q Consensus 99 ~~~~~ik~~Ll~~l~~~---~~~~vr~~~~~~i~~ia~~~~~~~-----~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l 170 (927)
+.+-.||+-+++.+.+- -.+.|-.++++.++.|.+..|-.. .+.+.+..+...++..+.++...|+.+|..+
T Consensus 76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 99999999999999873 145677889999999988766432 4678888888999988888899999999999
Q ss_pred hhhhHH---------------HHHH-hHHHHHHHHHhhhCCC---------CHHHHHHHHHHHHHHHH-hhCC----Cc-
Q 002400 171 SQFVSE---------------VLIA-HGDTLHEVFSKFLGSN---------NFDLRIAALEATVNFIM-NCLP----SL- 219 (927)
Q Consensus 171 ~~~~~~---------------~l~~-~~~~l~~~l~~~l~~~---------~~~vr~~a~~~l~~l~~-~~~~----~~- 219 (927)
...... .|.+ .+-+++.+-...+++. .......+++.-.+++. ..+. ++
T Consensus 156 vqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 156 VQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred HHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccc
Confidence 876542 1111 1223333333333321 11233333333333220 1111 00
Q ss_pred h----------hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHH-----HHHHHHHHHHHHHHhhcc
Q 002400 220 G----------EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFL-----RKQLVDVVGSMLQVAEAE 284 (927)
Q Consensus 220 ~----------~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-----~~~l~~ll~~ll~~~~~~ 284 (927)
+ .+..| .=+..++.+..+..+-.+.....+++++..++......| ..++.+++...-++++++
T Consensus 236 ed~ctVQIPTsWRs~f--~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np 313 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSF--LDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENP 313 (1082)
T ss_pred ccccceecCcHHHHHh--cCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 0 01111 124566677776666666677788888888886533332 356777787777777766
Q ss_pred CchhhhhCCc
Q 002400 285 AVFPGFLAAP 294 (927)
Q Consensus 285 ~~i~~~l~~~ 294 (927)
+.++|+
T Consensus 314 ----~~LsD~ 319 (1082)
T KOG1410|consen 314 ----QGLSDP 319 (1082)
T ss_pred ----cCCCCc
Confidence 455553
No 209
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.75 E-value=0.38 Score=49.71 Aligned_cols=143 Identities=13% Similarity=0.168 Sum_probs=101.3
Q ss_pred HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc---ccC--chHHHHHHHHHHhc--------CCChhHHH
Q 002400 360 TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI---LTP--YLDGIVSKLLVLLQ--------NGKQMVQE 426 (927)
Q Consensus 360 ~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~---~~~--~l~~l~~~L~~~l~--------~~~~~v~~ 426 (927)
..++.-++|.++..++| .++.+|..++.+|..+.+.++... +.. +.+.+-+.+..++. +.+..+-.
T Consensus 114 ~~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 68899999999999999 899999999999999999887665 433 35556666676665 44566778
Q ss_pred HHHHHHHHHHHHhhh-----hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHH
Q 002400 427 GALTALASVADSSQG-----QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 501 (927)
Q Consensus 427 ~a~~al~~l~~~~~~-----~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 501 (927)
.++.|+-.++..... ....+.+.+-..+...+....+-....++...++.+..+...+| -....++..++..+.
T Consensus 193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG-i~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG-ISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 888999998776421 11122233334344444332222246788888888999999998 567778888887776
Q ss_pred HHh
Q 002400 502 SLQ 504 (927)
Q Consensus 502 ~~~ 504 (927)
+..
T Consensus 272 ~~l 274 (282)
T PF10521_consen 272 QIL 274 (282)
T ss_pred HHh
Confidence 643
No 210
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=95.74 E-value=6.5 Score=47.04 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=76.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhh---h-chhHHHHhHhhHHHHHHHhccC-CCCchHHHHHHHHHHHhHhc
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTD---L-GPELQTQFHHRLLPALVGAMDD-FQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~-~~~~~~~~~~~il~~ll~~l~~-~~~~~v~~~a~~al~~l~~~ 396 (927)
+.++|.+...+-|+++.+|.=|...+.++... + ..++...+.+.+...+... +. ..++.....--..+..+.+.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 56778888888899999999899999887653 2 2222112333333333333 22 12333333344566666766
Q ss_pred CCCccccCchHH-----HHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh
Q 002400 397 CTPDILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF 443 (927)
Q Consensus 397 ~~~~~~~~~l~~-----l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 443 (927)
++.+.+..++.. ++..++..+...........+.++..+.+..+.+|
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~F 249 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDF 249 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHH
Confidence 666655554443 66677777777645556778899999999999876
No 211
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.73 E-value=0.22 Score=55.50 Aligned_cols=232 Identities=18% Similarity=0.181 Sum_probs=136.9
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HHHhcc---------------CCC-CCccchHHHHHHHhcCCChHH
Q 002400 97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVS-ELAASV---------------LPD-GDWPELIPFIFQCLVTFNDKI 159 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~-~ia~~~---------------~~~-~~w~~ll~~l~~~l~s~~~~~ 159 (927)
+.++|....+.|...+...+...+++.+.-.+. .+--.+ ... ..-..++|.|.+++.+.+..+
T Consensus 267 s~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~i 346 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQI 346 (690)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHH
Confidence 556666666666666665544555554433322 111111 000 112348899999999998888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHH
Q 002400 160 QESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEA 239 (927)
Q Consensus 160 r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~ 239 (927)
|..-+.=+...++.+.++. .-+.++|.+..++.|.++-+|..+++++..++ ..+... .+-..+++.+...
T Consensus 347 R~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La-~kL~~~-------~Ln~Ellr~~ar~ 416 (690)
T KOG1243|consen 347 RLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLA-PKLSKR-------NLNGELLRYLARL 416 (690)
T ss_pred HHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHH-hhhchh-------hhcHHHHHHHHhh
Confidence 8665555555555544332 34679999999999999999999999999998 655211 1222234444332
Q ss_pred HhcCChhHHHHHHHHHHHHHccC-cHHHHHHH-HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHH
Q 002400 240 LNKGNESSAQEALELLIELAATE-PRFLRKQL-VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVM 317 (927)
Q Consensus 240 l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~l-~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~ 317 (927)
-.+.+.. +..+.+++-.. ..++.+.. ..++.. . +...+.|+-...|.|++.++.+..+....
T Consensus 417 q~d~~~~-----irtntticlgki~~~l~~~~R~~vL~~--------a-ftralkdpf~paR~a~v~~l~at~~~~~~-- 480 (690)
T KOG1243|consen 417 QPDEHGG-----IRTNTTICLGKIAPHLAASVRKRVLAS--------A-FTRALKDPFVPARKAGVLALAATQEYFDQ-- 480 (690)
T ss_pred CccccCc-----ccccceeeecccccccchhhhccccch--------h-hhhhhcCCCCCchhhhhHHHhhcccccch--
Confidence 2212222 22333333211 01111111 111111 0 11345567788999999999887765443
Q ss_pred HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 318 IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 318 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
...-.+++|.+.....|++..||..|..++..+....
T Consensus 481 ~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 481 SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 2344578899999999999999999999998776543
No 212
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.69 E-value=2.3 Score=44.73 Aligned_cols=191 Identities=12% Similarity=0.208 Sum_probs=123.5
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhh-H-------HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHh
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFV-S-------EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMN 214 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~-~-------~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 214 (927)
+++..|+..+..-+-+.|..+..+++.+...- + +.+..+.+.++..+..+..+++ +-..+-..+..++ .
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ial~~g~mlRec~-k 152 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IALNCGDMLRECI-K 152 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--THHHHHHHHHHHT-T
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--ccchHHHHHHHHH-h
Confidence 57888888888888888988888888876542 1 1233445788888888888654 2222222333333 1
Q ss_pred hCCCchhHHhHHhhH--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHH----HHHHHHHHHHHHHHHhhccCchh
Q 002400 215 CLPSLGEKERFLDLL--PLMMRTLTEALNKGNESSAQEALELLIELAATEPRF----LRKQLVDVVGSMLQVAEAEAVFP 288 (927)
Q Consensus 215 ~~~~~~~~~~~~~~~--p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~----~~~~l~~ll~~ll~~~~~~~~i~ 288 (927)
+ + .+..++ +..+..+.+.++.+.-+++..|+..+.++....+.. +..+...++.. +.
T Consensus 153 ~---e----~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~----------~~ 215 (335)
T PF08569_consen 153 H---E----SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK----------YN 215 (335)
T ss_dssp S---H----HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH----------HH
T ss_pred h---H----HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----------HH
Confidence 1 0 111100 112233445566788899999999999988776544 44444455543 34
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhch--HHHHhhHH--HHHHHHHhccCCCCHHHHHHHHHHHHHhHhh
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCS--KVMIKNLD--QVVSMVLNSFQDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~--~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 353 (927)
.++.++++-.|+-++..||.+..... ..+..|+. +-+..++..|+|++..+|..|+..+-.+..+
T Consensus 216 ~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 216 KLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 77788999999999999999886433 34555543 5677888899999999999999999988765
No 213
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.62 E-value=4.9 Score=44.77 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhh
Q 002400 630 HEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEE 709 (927)
Q Consensus 630 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~ 709 (927)
+..++.+|..++..+-+.... ...| .. -+.++..+++.+. +.+..+
T Consensus 390 d~~~~aaa~l~~~s~srsV~a-L~tg-~~----------~~dv~~plvqll~----------------------dp~~~i 435 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSA-LRTG-LK----------RNDVAQPLVQLLM----------------------DPEIMI 435 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HHcC-Cc----------cchhHHHHHHHhh----------------------CcchhH
Confidence 567888888888887766532 2222 00 1223344444442 234667
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHH-hHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCC--CcHHHHHHHHHHHHHhhcC
Q 002400 710 RRIAICIFDDVMEHCREAALKYYD-TYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGS--VFKPLVGEALSRLDFVIRH 786 (927)
Q Consensus 710 r~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~--~~~~~~~~il~~L~~~l~~ 786 (927)
...++++++.++-..++.-..++. ..+..+.+.+.++++.+|+++.|.|-.+.-.+.+ .+.++..--.+.+...++|
T Consensus 436 ~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd 515 (678)
T KOG1293|consen 436 MGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND 515 (678)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC
Confidence 778889999888877765445544 6777888889999999999999999988876664 3344444444556666677
Q ss_pred CC
Q 002400 787 PN 788 (927)
Q Consensus 787 ~~ 788 (927)
|+
T Consensus 516 ~d 517 (678)
T KOG1293|consen 516 PD 517 (678)
T ss_pred CC
Confidence 64
No 214
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.61 E-value=1.2 Score=49.07 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHH-HHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHh
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVS-MVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGA 373 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~-~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~ 373 (927)
-++.|.+|..+||.++...+. +.+..++. .+..+|++++..-|..++..+..++..............+.+.|...
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 388999999999999988755 55566665 58889999999999999999999998764332111134566667777
Q ss_pred ccCCCCc-----------hHHHHHHHHHHHhHhcCC--CccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 374 MDDFQNP-----------RVQAHAASAVLNFSENCT--PDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 374 l~~~~~~-----------~v~~~a~~al~~l~~~~~--~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
|.+ +.+ ++|..+-..+..|.+... .+.+ |.++.+++.--. ..+...--+.|-..++.......
T Consensus 177 L~~-~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~kl-p~l~~~v~~~~~--~~p~~fsi~~A~~v~~~~~~~l~ 252 (441)
T PF12054_consen 177 LEN-PEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKL-PSLPVVVQGEPE--AGPEAFSIEQAEKVVGEDFEKLK 252 (441)
T ss_pred HcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhc-cccccccccccc--cCCccCCHHHHHHHHHHHHHHHH
Confidence 774 222 345555555555544321 1111 122111110000 00000011111111111111111
Q ss_pred hhhH------------HhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCC
Q 002400 441 GQFQ------------KYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 508 (927)
Q Consensus 441 ~~~~------------~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 508 (927)
..+. .--..+...+...- .......+|..|.-+-+.++...=+++..|....+|+.+..
T Consensus 253 ~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~---~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~------ 323 (441)
T PF12054_consen 253 KSLSPSQKLSALQALEDRRQRLQAAIEEAK---EVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKR------ 323 (441)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhc------
Confidence 1110 00011111111110 01123334444444444444322247888988888888654
Q ss_pred CCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccC
Q 002400 509 EADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLK 551 (927)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~ 551 (927)
+.+..+......++..+...+-..-..--++|+.-|...+..+
T Consensus 324 Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 324 EENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccC
Confidence 1233455666667777776665444444477888888777655
No 215
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.52 E-value=1.5 Score=53.09 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=51.5
Q ss_pred HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchH--HHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 363 HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 363 ~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~--~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
-..++..|++.|.+ .+-.+..++|.+|.++...++.+ +.++- ..+..|..++.+.+..+-+-+..++.++.
T Consensus 528 ~~NCLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~D--Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPED--QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HhhHHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHH--HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 44688899999998 77788899999999998777643 23332 34666777777777666666666666665
No 216
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.45 E-value=4.9 Score=43.65 Aligned_cols=292 Identities=14% Similarity=0.120 Sum_probs=149.8
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC-Cc-cc
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG-DW-PE 143 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~-~w-~~ 143 (927)
.++.-+...|+-+|-..+... -...+......+.+.+...+.+..+...+..+.++++.+.+...-+. .| .+
T Consensus 112 ~~d~~i~~~a~~iLt~l~~~~------~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 112 RQDQFIVHMSFSILAKLACFG------LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred CCchhHHHHHHHHHHHHHhcC------ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 567778888888888877543 12233344445556666666654344555556678887766532211 23 33
Q ss_pred hHHHHHHHhcCC--ChHHHHHHHHHHHHhh--hhhHHHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCC
Q 002400 144 LIPFIFQCLVTF--NDKIQESALLILSRMS--QFVSEVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 144 ll~~l~~~l~s~--~~~~r~~al~~l~~l~--~~~~~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
.++.|...++.. +......++.|+=.+. +...+.+ .-..+++.+.+.+.+. -+.|-.-++.++.+++ ..-.+
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~--~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll-~~~~~ 262 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVL--KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI-SKRVD 262 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhh--ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-hcccc
Confidence 567777766542 2344444444443332 1111211 1246788888888765 5556666777788877 32111
Q ss_pred chhHH-----hHHhhHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHccC---cHHHHHHHHHHHHHHHHHhhccCchh
Q 002400 219 LGEKE-----RFLDLLPLMMRTLTEALNK--GNESSAQEALELLIELAATE---PRFLRKQLVDVVGSMLQVAEAEAVFP 288 (927)
Q Consensus 219 ~~~~~-----~~~~~~p~ll~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~---~~~~~~~l~~ll~~ll~~~~~~~~i~ 288 (927)
.+... .+..-++.+++.+. .. .|++ ....++.+.+..+.. -.-|..|..++...-++..
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~---~rk~~Ded-L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WS------- 331 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLE---QRKYDDED-LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWS------- 331 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHh---cCCCCcHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCC-------
Confidence 11111 11111222333322 22 2343 345555555544331 1123344444433222100
Q ss_pred hhhCC-cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhchh--HHHHhHh
Q 002400 289 GFLAA-PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPE--LQTQFHH 364 (927)
Q Consensus 289 ~~l~~-~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~ 364 (927)
..-.+ .=|+. +... +.+.=-+++..+...| .+.+|.+-..||.=+|.++.+.+.. +...+
T Consensus 332 p~H~se~FW~E-------------N~~k-f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l-- 395 (429)
T cd00256 332 PVHKSEKFWRE-------------NADR-LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL-- 395 (429)
T ss_pred CCCCCchHHHH-------------HHHH-HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc--
Confidence 00001 11432 1111 1111123455555555 2456788889999999999986422 21111
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 365 RLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 365 ~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
..=..+++.+.+ ++++||..|..|+..+.
T Consensus 396 g~K~~vM~Lm~h-~d~~Vr~eAL~avQklm 424 (429)
T cd00256 396 GGKQRVMRLLNH-EDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 234557888888 99999999999988774
No 217
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.42 E-value=0.43 Score=53.26 Aligned_cols=183 Identities=13% Similarity=0.106 Sum_probs=119.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH
Q 002400 236 LTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK 315 (927)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~ 315 (927)
+.++....|..++..-+..+....+.-++ ...-..++|.+. ..+.|.+...|+-.+.++..++.....
T Consensus 335 l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~--~~~~d~I~phv~----------~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 335 LLKLFKSPDRQIRLLLLQYIEKYIDHLTK--QILNDQIFPHVA----------LGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred HHHHhcCcchHHHHHHHHhHHHHhhhcCH--HhhcchhHHHHH----------hhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 33334456666665555555544433111 001124444333 556688999999999999998887665
Q ss_pred HHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 316 VMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 316 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
. ..=.+++..+.+.-.|+++.+|.-...|+|.++.++.+.. ....+.......+.| +-..-|.++..++....+
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkd-pf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKD-PFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcC-CCCCchhhhhHHHhhccc
Confidence 2 1223677777777779999999999999999998876533 122233444556888 777788888888777666
Q ss_pred cCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 002400 396 NCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 439 (927)
Q Consensus 396 ~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~ 439 (927)
..... .....|++.+....-+.+..+|..+..++...-...
T Consensus 477 ~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 477 YFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ccchh---hhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 55432 335567777777777888888888877766654433
No 218
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.34 E-value=2.1 Score=49.77 Aligned_cols=227 Identities=19% Similarity=0.167 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC--
Q 002400 118 KSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS-- 195 (927)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~-- 195 (927)
...|...-++++... =++-+..+.+.+.+..... ..+..++..+.......- +.++..+...+.+
T Consensus 340 ~~~r~~~~Dal~~~G--------T~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt----~~~l~~l~~l~~~~~ 406 (574)
T smart00638 340 KKARRIFLDAVAQAG--------TPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPT----EEILKALFELAESPE 406 (574)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCC----HHHHHHHHHHhcCcc
Confidence 345555555554321 1456777777776654321 123334444433332221 2344444444443
Q ss_pred --CCHHHHHHHHHHHHHHHHhhCCCchh--HHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH
Q 002400 196 --NNFDLRIAALEATVNFIMNCLPSLGE--KERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV 271 (927)
Q Consensus 196 --~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 271 (927)
+++.++..|+-+++.++.....+... ......++|.+.+.+.......+.+.....+..+.++.. +
T Consensus 407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~ 476 (574)
T smart00638 407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------P 476 (574)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------h
Confidence 36789999999999988323322211 123456777777777776666666655555665554321 1
Q ss_pred HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhH
Q 002400 272 DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLS 351 (927)
Q Consensus 272 ~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 351 (927)
..++.+..++ . .-.......|.+|+++|..++..+++... +.+++.... .+.++.||-+|+..+-..
T Consensus 477 ~~i~~l~~~l------~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~---~~l~~i~~n--~~e~~EvRiaA~~~lm~t- 543 (574)
T smart00638 477 SSIKVLEPYL------E-GAEPLSTFIRLAAILALRNLAKRDPRKVQ---EVLLPIYLN--RAEPPEVRMAAVLVLMET- 543 (574)
T ss_pred hHHHHHHHhc------C-CCCCCCHHHHHHHHHHHHHHHHhCchHHH---HHHHHHHcC--CCCChHHHHHHHHHHHhc-
Confidence 2222222111 1 00124568999999999998887776222 222232221 235788999998887542
Q ss_pred hhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHH
Q 002400 352 TDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASA 389 (927)
Q Consensus 352 ~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~a 389 (927)
.|.. ..+..+...+...++..|+....+.
T Consensus 544 ---~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 544 ---KPSV------ALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred ---CCCH------HHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 2322 2344444555443667776655544
No 219
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.03 E-value=2.4 Score=49.99 Aligned_cols=227 Identities=19% Similarity=0.197 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCC
Q 002400 118 KSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNN 197 (927)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~ 197 (927)
...|..+-+++..... +.-+..+.+.+.+......+ +...+..+.......-...+..+..++..--...+
T Consensus 378 ~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~ 448 (618)
T PF01347_consen 378 EQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNS 448 (618)
T ss_dssp HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-
T ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCC
Confidence 4556666666654321 33456666666654332222 34444444443322222233333333322211236
Q ss_pred HHHHHHHHHHHHHHHHhhCCC--------chhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHH
Q 002400 198 FDLRIAALEATVNFIMNCLPS--------LGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQ 269 (927)
Q Consensus 198 ~~vr~~a~~~l~~l~~~~~~~--------~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 269 (927)
+.++..|+-+++.++...... .........+++.+.+.+......++++....++..+..+.-
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------- 519 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---------
Confidence 789999999999988333222 112344566778888877777777777777777777776531
Q ss_pred HHHHHHHHHHHhhccCchhhhhCC---cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCC--CCHHHHHHHH
Q 002400 270 LVDVVGSMLQVAEAEAVFPGFLAA---PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQD--PHPRVRWAAI 344 (927)
Q Consensus 270 l~~ll~~ll~~~~~~~~i~~~l~~---~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d--~~~~vr~~a~ 344 (927)
+..++.+. .++.+ .....|-+|+.+|..++..+++ .+.+.+++.+.| .++.||-+|+
T Consensus 520 -~~~i~~l~----------~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 520 -PESIPVLL----------PYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp -GGGHHHHH----------TTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred -chhhHHHH----------hHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHH
Confidence 23444444 22222 3578999999999988887775 233333333323 3678999998
Q ss_pred HHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHH
Q 002400 345 NAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAV 390 (927)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al 390 (927)
..|-.. .|.. .++..+...+...++..|.....+.|
T Consensus 582 ~~lm~~----~P~~------~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 582 LILMRC----NPSP------SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHT-------H------HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHhc----CCCH------HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 776542 2322 33444455554436777776666554
No 220
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.98 E-value=3.7 Score=44.04 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=129.9
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH--H-HHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHH
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV--L-IAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIM 213 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~--l-~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~ 213 (927)
-.|..+.+.+..++-+++..+|-.|+.++.+++...... + .-+++.+ +...+..+ ...=|..|++.+..++
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~---ii~SL~~~~~~~~ER~QALkliR~~l- 96 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIF---IIRSLDRDNKNDVEREQALKLIRAFL- 96 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchh---hHhhhcccCCChHHHHHHHHHHHHHH-
Confidence 368888888887666666999999999999888765431 1 1133332 33334322 4556899999999999
Q ss_pred hhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHH--HHHHHHHHHHHHhhccCchhhhh
Q 002400 214 NCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRK--QLVDVVGSMLQVAEAEAVFPGFL 291 (927)
Q Consensus 214 ~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~l~~ll~~ll~~~~~~~~i~~~l 291 (927)
+.-.+ ...+=..+++.+..+.++.++..+..|++.+.+++-..|..+.. .+..++..+.
T Consensus 97 ~~~~~------~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~------------- 157 (371)
T PF14664_consen 97 EIKKG------PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI------------- 157 (371)
T ss_pred HhcCC------cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH-------------
Confidence 54211 12233456777777777788888899999999998777765432 2333333332
Q ss_pred CCcchhHHHHHHHHHHHHhhhchHH--HHh--hHHHHHHHHHhc----cCCCC--HHHHHHHHHHHHHhH-hhhchhHHH
Q 002400 292 AAPEWQKHHAVLIALAQIAEGCSKV--MIK--NLDQVVSMVLNS----FQDPH--PRVRWAAINAIGQLS-TDLGPELQT 360 (927)
Q Consensus 292 ~~~~~~~r~aal~al~~i~~~~~~~--~~~--~l~~l~~~l~~~----l~d~~--~~vr~~a~~~l~~~~-~~~~~~~~~ 360 (927)
++....-++.+.++-.+.+..... +.+ .++.++..+... ..+.+ .+.+ .+..++..+. +|-|--...
T Consensus 158 -d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 158 -DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred -hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeee
Confidence 222224445555555555443221 111 123333222222 22222 2333 3444444443 343211000
Q ss_pred HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 361 QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 361 ~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
..-..-+..++..+.- +++.+|......|-.+..
T Consensus 236 ~~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLR 269 (371)
T ss_pred cCCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHC
Confidence 1111467777788887 778888887777666654
No 221
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.85 E-value=0.38 Score=51.06 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=106.0
Q ss_pred HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC---ChhHHHHHHH
Q 002400 177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG---NESSAQEALE 253 (927)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~---~~~~~~~a~~ 253 (927)
++..|+..+...+. +++...|..|+..|.. + ..++.++|.++..+.+.+... +-......+.
T Consensus 175 Elq~yf~~It~a~~----~~~~~~r~~aL~sL~t-------D----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~ 239 (343)
T cd08050 175 ELQLYFEEITEALV----GSNEEKRREALQSLRT-------D----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMR 239 (343)
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHHHHHhcc-------C----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 33445555555444 3567777777755332 1 246778888888877654322 3455566777
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC
Q 002400 254 LLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ 333 (927)
Q Consensus 254 ~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~ 333 (927)
....+..++.-++.+|+-.++|.++.++-.+......-.+.+|..|+-|...++.++..++.......+.++..+.+.+.
T Consensus 240 ~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 77888888777788888888888876542210000000246799999999999999998776555556778888888887
Q ss_pred CCC-H-HHHHHHHHHHHHhH
Q 002400 334 DPH-P-RVRWAAINAIGQLS 351 (927)
Q Consensus 334 d~~-~-~vr~~a~~~l~~~~ 351 (927)
|+. + ..++.|+..|+.++
T Consensus 320 d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred CCCCCcchhhHHHHHHHHhC
Confidence 764 3 33888888888765
No 222
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=1.8 Score=46.85 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=92.4
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHH
Q 002400 188 VFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLR 267 (927)
Q Consensus 188 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 267 (927)
++.+.+.|.++-.|...+-.+..-. . ..+....+..++ ...+.+.+++++..|.-.+.-+|-.++..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy-~---GTgn~~vv~~lL-------h~avsD~nDDVrRAAViAlGfvc~~D~~~-- 586 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAY-V---GTGNLGVVSTLL-------HYAVSDGNDDVRRAAVIALGFVCCDDRDL-- 586 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHH-h---cCCcchhHhhhh-------eeecccCchHHHHHHHHheeeeEecCcch--
Confidence 4455666777778887766554422 1 121112222221 12245667778776654443333223222
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002400 268 KQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAI 347 (927)
Q Consensus 268 ~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 347 (927)
+...++.+ ..+-++.+|.+...+||-.+.+.+. ..-++.+-..+.|++..||++|+.++
T Consensus 587 --lv~tvelL-------------s~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~ 645 (926)
T COG5116 587 --LVGTVELL-------------SESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAV 645 (926)
T ss_pred --hhHHHHHh-------------hhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 12222211 1246799999999999988887664 23344555567899999999999999
Q ss_pred HHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 348 GQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
+.+...+.++. .+....+...+.+.+.+
T Consensus 646 ~mIl~Q~n~~L-np~v~~I~k~f~~vI~~ 673 (926)
T COG5116 646 GMILMQCNPEL-NPNVKRIIKKFNRVIVD 673 (926)
T ss_pred HHHHhhcCccc-ChhHHHHHHHHHHHHhh
Confidence 99988776665 45555666666666665
No 223
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.82 E-value=0.9 Score=41.93 Aligned_cols=96 Identities=13% Similarity=0.205 Sum_probs=75.6
Q ss_pred HhHhhHHHHHHHhccCC-----------------CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChh
Q 002400 361 QFHHRLLPALVGAMDDF-----------------QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQM 423 (927)
Q Consensus 361 ~~~~~il~~ll~~l~~~-----------------~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~ 423 (927)
++++.++|.+...+.-. ..-.+|..|+.++..+.+.+... + .+..+++.+...+.+ +..
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~-~--~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR-I--DISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS-S---HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh-C--CHHHHHHHHHhhcCC-cHH
Confidence 45677888887655420 23479999999999999988644 2 367778999999988 899
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc
Q 002400 424 VQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 424 v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 460 (927)
+|..+...+..++...+..+.+.++.+++.+...+..
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988864
No 224
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.79 E-value=7.3 Score=42.14 Aligned_cols=313 Identities=13% Similarity=0.072 Sum_probs=165.0
Q ss_pred CCChHHHHHHHHHHHHhhhhhH-----HHHHHhHHHHHHHHHhhhCC------C-CHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 154 TFNDKIQESALLILSRMSQFVS-----EVLIAHGDTLHEVFSKFLGS------N-NFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 154 s~~~~~r~~al~~l~~l~~~~~-----~~l~~~~~~l~~~l~~~l~~------~-~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
+.+...|..|+..|........ ..+..+++.+.+.+..-+.. + +..+-..|+++++.++ .+. .-
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l-~~~---~i 79 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFL-YHP---EI 79 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHH-ccH---HH
Confidence 3444556667766666554432 24556677777777665554 2 5678889999999988 321 00
Q ss_pred HHhH-HhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhH
Q 002400 222 KERF-LDLLPLMMRTLTEALNKG--NESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQK 298 (927)
Q Consensus 222 ~~~~-~~~~p~ll~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~ 298 (927)
...+ .+..-.++......+..+ +..+....+.++.. ....++++.......+-..+... .+.+.+ -..
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~-Q~f~~~~~~~~~~~~l~~~l~~i------~~~~~s--~si 150 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD-QKFSPKIMTSDRVERLLAALHNI------KNRFPS--KSI 150 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCCCcccchhhHHHHHHHHHHh------hccCCc--hhH
Confidence 0000 011112333333333222 22333333333321 22234444433333222222111 111222 223
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHH-H--------------HhH
Q 002400 299 HHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQ-T--------------QFH 363 (927)
Q Consensus 299 r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~--------------~~~ 363 (927)
-...+.++..+....+..|..+...=+|.++..+-+....+|..|..+...+...++++.. . .+.
T Consensus 151 ~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~ 230 (372)
T PF12231_consen 151 ISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLI 230 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHH
Confidence 3445667777788888888888887788888888888888998877777666665554220 0 112
Q ss_pred hhHHHHHHHhccCCCCchH-HHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 364 HRLLPALVGAMDDFQNPRV-QAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v-~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
+.+.+.+...+.+ ++..+ .-..-.++..+...-. -.-.+|+...+.....++++.++.+|..|+.+=..++.....+
T Consensus 231 ~~~~~~L~~mi~~-~~~~~~a~~iW~~~i~LL~~~~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 231 QLYCERLKEMIKS-KDEYKLAMQIWSVVILLLGSSR-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHHHHHHHHhC-cCCcchHHHHHHHHHHHhCCch-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2233333344444 22221 1222223333332111 1224678888888888999999999999999988888765543
Q ss_pred ---hHHhHHHHHHHHHHHHhcccCcc-hhhHHHHHHHHHHHHH
Q 002400 443 ---FQKYYDAVMPYLKAILVNANDKS-NRMLRAKSMECISLVG 481 (927)
Q Consensus 443 ---~~~~~~~i~~~L~~~l~~~~~~~-~~~lr~~a~~~l~~l~ 481 (927)
..+-+..+..++...++...... ...++..++.+++.+.
T Consensus 309 ~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 309 ELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred ccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 23444555544444444322221 1155666666555544
No 225
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=8.5 Score=42.22 Aligned_cols=338 Identities=14% Similarity=0.162 Sum_probs=170.5
Q ss_pred hHhhHHHHHHHhccCC--CCchHHHHHHHHHHHhHh--cCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 362 FHHRLLPALVGAMDDF--QNPRVQAHAASAVLNFSE--NCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 362 ~~~~il~~ll~~l~~~--~~~~v~~~a~~al~~l~~--~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
....++..+..++++. ++..+-..+..+++.-.. ..+++.+. -...++..++..++ ....-+.|..++..+..
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~-a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~ 226 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVL-ASFPLITLAFRSLS--DDELHEEATECICALLY 226 (559)
T ss_pred hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHH-hhhHHHHHHHHHcc--cchhhHHHHHHHHHHHH
Confidence 3344555555555542 224455555566555443 22222221 11256666677776 44566777777777765
Q ss_pred HhhhhhH--HhHH------HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhh-------hHHHHHHHHHH
Q 002400 438 SSQGQFQ--KYYD------AVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRD-------DAKQVMEVLMS 502 (927)
Q Consensus 438 ~~~~~~~--~~~~------~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~-------~~~~i~~~l~~ 502 (927)
.....-. +|-. .++|.....-....| ... .+.++.+-..+| +.|.. +...+++.++-
T Consensus 227 ~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d---~d~----~~a~~RIFtel~-eaf~~~i~~np~~~l~~vellLl 298 (559)
T KOG2081|consen 227 CSLDRSEGLPLAAILFIGVIILETAFHLAMAGED---LDK----NEAICRIFTELG-EAFVVLISTNPEEFLRIVELLLL 298 (559)
T ss_pred HhhhhhccCchhHHHhccccccchHHHHhhcccC---HHH----HHHHHHHHHHHH-HHHHHHHhhCCCcchhHHHHHHH
Confidence 5543111 2221 223333333222222 111 223333333333 11110 11223333332
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHhc--------cccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhh
Q 002400 503 LQGSQMEADDPTTSYMLQAWARLCKCLG--------QEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQT 574 (927)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (927)
... . .+..+-+..+..|-++.+.+- .-|.||...++..+...++..++....- | +.++.
T Consensus 299 ~~~-h--~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~-------E-e~~~f-- 365 (559)
T KOG2081|consen 299 VAG-H--NDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP-------E-EESEF-- 365 (559)
T ss_pred hcc-C--CchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc-------c-chhHH--
Confidence 111 1 223466667777777766532 2488999999999999998876321110 0 11111
Q ss_pred hccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHh-hhhcccCcHHHHHHHHHHHHHHHHHHHHHHH
Q 002400 575 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV-PLLKFYFHEEVRKAAVSAMPELLRSAKLAVE 653 (927)
Q Consensus 575 ~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~ 653 (927)
-+-|....+.+...+.-.|++ +.+..+. ++.+....|+.-+++.-.+..+++...
T Consensus 366 --------------~~fR~~v~dvl~Dv~~iigs~------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~---- 421 (559)
T KOG2081|consen 366 --------------FEFRLKVGDVLKDVAFIIGSD------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVS---- 421 (559)
T ss_pred --------------HHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCC----
Confidence 112334445555555555543 2222222 222224478899999999888876631
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 002400 654 KGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD 733 (927)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 733 (927)
.--+.++|.+++.+-+=+ .-...|..++..+|++.+-...+ ..++.
T Consensus 422 -------------~~e~~i~pevl~~i~nlp--------------------~Q~~~~~ts~ll~g~~~ew~~~~-p~~le 467 (559)
T KOG2081|consen 422 -------------PEENTIMPEVLKLICNLP--------------------EQAPLRYTSILLLGEYSEWVEQH-PELLE 467 (559)
T ss_pred -------------ccccchHHHHHHHHhCCc--------------------cchhHHHHHHHHHHHHHHHHHhC-cHHHH
Confidence 122456676666665433 23458999999999887765432 12344
Q ss_pred hHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 002400 734 TYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFV 783 (927)
Q Consensus 734 ~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~ 783 (927)
.++..+...+.... ....++.+...++........+.+++++..+..+
T Consensus 468 ~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 468 PVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSL 515 (559)
T ss_pred HHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44445555555443 5555566666666665555666665555554433
No 226
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.62 E-value=4 Score=43.04 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHH----HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002400 182 GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLP----LMMRTLTEALNKGNESSAQEALELLIE 257 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p----~ll~~l~~~l~~~~~~~~~~a~~~l~~ 257 (927)
...++.++... .++.++....+..+..++ ..-+ ...+.|..+-. .....+.+.+..+|.-+...++..+..
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll-~~~~--~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLL-SDDP--SRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHH-H-SS--SSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHH-hcCH--HHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34444444443 446778888888888777 4322 12222322211 122233335567788888899999999
Q ss_pred HHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHHHhcc---
Q 002400 258 LAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK--VMIKNLDQVVSMVLNSF--- 332 (927)
Q Consensus 258 l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~--~~~~~l~~l~~~l~~~l--- 332 (927)
+....+.........+++.+++.+ ...+++++-.....++.+|+.+...-.. .+-. ...++.+...+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L------~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWL------SSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQ 203 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHH------H-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH--
T ss_pred HHHcCCccccchHHHHHHHHHHHH------HHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhh
Confidence 887655444433345555555222 2333445566678899999998864322 1111 33444444444
Q ss_pred ----CCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc
Q 002400 333 ----QDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 333 ----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 400 (927)
+..+..+.+.++.|+=.++ |.++.... ....++|.+...+.+.....|-+-+..+|.++++.....
T Consensus 204 ~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 204 ATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred cccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 2234567777777765443 23332121 123389999998887566778788889999998776543
No 227
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=7.9 Score=41.32 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
..-++|++.|-.+++...-..+-.-..++..+++.|.-.+..+-......+..++-...... .---..++..|++.+..
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC
Confidence 34456788888888876655554556788899999987777666666666666654322222 22345688888998888
Q ss_pred CCCchHHHHHHHHHHHhHhcCCCccccC--chHHHHHHHHHHhcCCCh
Q 002400 377 FQNPRVQAHAASAVLNFSENCTPDILTP--YLDGIVSKLLVLLQNGKQ 422 (927)
Q Consensus 377 ~~~~~v~~~a~~al~~l~~~~~~~~~~~--~l~~l~~~L~~~l~~~~~ 422 (927)
.++.++......+-++.-..+ +.| .-..+++.+..++.+.+.
T Consensus 357 -~h~dL~~~tl~LlfNlSFD~g---lr~KMv~~GllP~l~~ll~~d~~ 400 (791)
T KOG1222|consen 357 -QHPDLRKATLMLLFNLSFDSG---LRPKMVNGGLLPHLASLLDSDTK 400 (791)
T ss_pred -CCHHHHHHHHHHhhhcccccc---ccHHHhhccchHHHHHHhCCccc
Confidence 889999999988888764433 222 223567777777776543
No 228
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.44 E-value=4.4 Score=44.20 Aligned_cols=174 Identities=17% Similarity=0.180 Sum_probs=104.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc
Q 002400 234 RTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC 313 (927)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~ 313 (927)
+.+.+.+.+.++..+..|++.+.+ + + -+..++|.+.....+ -+...+.-.|-+.-...+....++..+.
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---D-s-----GL~~LlPyFv~fIae--~vs~ni~~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---D-S-----GLQQLLPYFVTFIAE--GVSVNIVQNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---C-c-----cHHHHHHHHHHHHhh--heeeccccccHHHHHHHHHHHHHHhcCC
Confidence 333344445677777777776543 2 1 234455554422211 0011111133444445555666666665
Q ss_pred hHHHHhhHHHHHHHHHhcc----------CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCC-chH
Q 002400 314 SKVMIKNLDQVVSMVLNSF----------QDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQN-PRV 382 (927)
Q Consensus 314 ~~~~~~~l~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~-~~v 382 (927)
.-.+.+|+..++|.++.++ .|.+|.+|.-|+..+..++..++... ......++..+.+.+.|... ...
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchh
Confidence 5567799999999887654 25689999999999999999887655 34667788888888888323 344
Q ss_pred HHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcC
Q 002400 383 QAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQN 419 (927)
Q Consensus 383 ~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~ 419 (927)
.-.+...|..|....-...+.|.+......+...+..
T Consensus 358 ~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 358 HYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDV 394 (576)
T ss_pred hhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhccc
Confidence 4555666666654433344556666666666555443
No 229
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.41 E-value=8.2 Score=44.18 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhH-------HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNL-------DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
...-+++.-+|..+..+... ...++ +..+|.++..|..++..|..+++-+|..++.+.. .....-...+|
T Consensus 533 ~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~ 609 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIP 609 (717)
T ss_pred hHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHH
Confidence 34445556666655554332 11222 2345888899999999999999999999987543 22234467899
Q ss_pred HHHHhccCCCC-----chHHHHHHHHHHHhHhc
Q 002400 369 ALVGAMDDFQN-----PRVQAHAASAVLNFSEN 396 (927)
Q Consensus 369 ~ll~~l~~~~~-----~~v~~~a~~al~~l~~~ 396 (927)
.|+.+|-+... ..+-..+|..|.+++..
T Consensus 610 ~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 610 DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred HHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 99999987322 46677788888888743
No 230
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.33 E-value=0.51 Score=38.71 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=67.2
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK 445 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 445 (927)
.+...+..+.| +.+.||.++...|..+++.-. ......+.++..++..+++.++.|--.|+.++..++...+.
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 34556677888 889999999999999998865 12346789999999999999999999999999999987664
Q ss_pred hHHHHHHHHHHHHh
Q 002400 446 YYDAVMPYLKAILV 459 (927)
Q Consensus 446 ~~~~i~~~L~~~l~ 459 (927)
.++|.|.+...
T Consensus 77 ---~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ---EVLPILLDEYA 87 (92)
T ss_pred ---HHHHHHHHHHh
Confidence 35555555543
No 231
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.33 E-value=8.2 Score=40.66 Aligned_cols=169 Identities=12% Similarity=0.160 Sum_probs=105.7
Q ss_pred CChhhHHHHHHHHHHHHHHhhhhhhh----hHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcC--------CCcHHH
Q 002400 705 KTAEERRIAICIFDDVMEHCREAALK----YYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGG--------SVFKPL 772 (927)
Q Consensus 705 ~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~--------~~~~~~ 772 (927)
.-++.|..=+..+..+.+++.+.+.. .+..++..+..++++.+.++...+..++..+..... ..++.|
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQY 211 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45788888888999999988766543 466788888888999999999999999998887632 345678
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcC-CC--CCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 002400 773 VGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHR-DS--IDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMV 849 (927)
Q Consensus 773 ~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~-~~--~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~ 849 (927)
+..+++.+..++.|+.. ...-+.-+..+.+++.... +. .++-. |.. .-...+.+.+..++
T Consensus 212 ~~~il~~if~vltD~~H-----k~gf~~q~~iL~~Lf~~ve~~~i~~~l~~---------~~~---~n~~~v~~~i~~~L 274 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSDH-----KSGFKLQSQILSNLFRLVESGSIQVPLFD---------PGM---SNQEFVSEYIANLL 274 (319)
T ss_dssp HHHHHHHHHHHHHSTT------GGGHHHHHHHHHHHHHHHHTT-SSSSSSS---------TTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCccc-----HHHHHHHHHHHHHHHHHHHcccccccccC---------CCC---ccHHHHHHHHHHHH
Confidence 88999999999988863 2333445566666665321 11 12211 111 12334556666666
Q ss_pred hccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Q 002400 850 ERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQ 898 (927)
Q Consensus 850 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 898 (927)
.+.-|.+ -++-+..|...|-... ....+-|..+..++-+++
T Consensus 275 ~~~Fp~l-------~~~qi~~fv~~Lf~~~-~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 275 SEAFPNL-------SPKQIENFVQGLFELN-NDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp HHH-TTS--------HHHHHHHHHHHHHTT-T-HHHHHHHHHHHHHHHT
T ss_pred HHhCCCC-------CHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhhh
Confidence 5544443 2233444444443222 123566777777666654
No 232
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.20 E-value=12 Score=42.26 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC--CchHHHHHHHHH---HHhHhcCCCccccCchHHHH
Q 002400 336 HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ--NPRVQAHAASAV---LNFSENCTPDILTPYLDGIV 410 (927)
Q Consensus 336 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~--~~~v~~~a~~al---~~l~~~~~~~~~~~~l~~l~ 410 (927)
++.+|...+..|.+-.. ....++.++..+..++.+ . +.++|..+...+ ...+..++...+...-+.+.
T Consensus 296 ~~~lq~kIL~~L~kS~~------Aa~~~~~~~~i~~~~l~~-~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~ 368 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVI------AATSFPNILQIVFDGLYS-DNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVIL 368 (501)
T ss_pred CHHHHHHHHHHHHHhHH------HHhCCccHHHHHhccccC-CccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHH
Confidence 56777766666655221 134567788888888887 5 678888888888 77777777665555556666
Q ss_pred HHHHHHhc--------CCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHH
Q 002400 411 SKLLVLLQ--------NGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGM 482 (927)
Q Consensus 411 ~~L~~~l~--------~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 482 (927)
..+.+.++ ......|..++++||.++...+..+..- -.++..|+..+.. +...+|...-+|++.++.
T Consensus 369 ~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~----~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 369 SQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLED----ESPEVRVSIQEALSSLAP 443 (501)
T ss_pred hcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhC----cchHHHHHHHHHHHHHHH
Confidence 66666663 2246789999999999999888765332 2455666666633 566799999999999988
Q ss_pred hhC
Q 002400 483 AVG 485 (927)
Q Consensus 483 ~~~ 485 (927)
+..
T Consensus 444 af~ 446 (501)
T PF13001_consen 444 AFK 446 (501)
T ss_pred HHh
Confidence 765
No 233
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.14 E-value=3.4 Score=46.67 Aligned_cols=174 Identities=16% Similarity=0.248 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
..+-.-+..|..+..+.+.. -....++|.++..+.+.. ..-...-++-.+++.... ..|...++|.+...+.-
T Consensus 288 ~qKs~Flk~Ls~~ip~fp~r--v~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~~~ 360 (700)
T KOG2137|consen 288 SQKSSFLKGLSKLIPTFPAR--VLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIYSA 360 (700)
T ss_pred HHHHHHHHHHHHhhccCCHH--HHHHhhhhHHHHHhcccc--ccccccchhhhhhhccch---hhhhhhhhHHHHHHhcc
Confidence 33333444455555554442 224456666666554321 111111222223332211 35677788888877774
Q ss_pred CCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q 002400 377 FQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKA 456 (927)
Q Consensus 377 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~ 456 (927)
.....+..-...=+..+.+..+++ ...+.+++.|...+++.+..+++.++..+..+++.+.-.+ --+.++|.+.+
T Consensus 361 ~~~~~~~l~i~e~mdlL~~Kt~~e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~ 435 (700)
T KOG2137|consen 361 SDPKQALLFILENMDLLKEKTPPE---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKN 435 (700)
T ss_pred CCcccchhhHHhhHHHHHhhCChH---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhc
Confidence 133444433344444456666654 3578899999999999999999999999999998876332 22457777777
Q ss_pred HHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 457 ILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 457 ~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
.... .....++..++.|++.++..+.
T Consensus 436 l~~~---tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 436 LAFK---TTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred chhc---ccchHHHHHHHHHHHHHHHHHH
Confidence 6322 2456678888889988886664
No 234
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.14 E-value=0.62 Score=49.44 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc----------CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHh
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF----------QDPHPRVRWAAINAIGQLSTDLGPELQTQFHH 364 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 364 (927)
++..-...+..+.++..+..=.+.+|+..++|.++.++ .+.+|.+|.-|+..++.++..++... ....+
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ 308 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY-NTLQP 308 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHH
Confidence 67777777778888887766567789999999888765 34678999999999999999887654 34566
Q ss_pred hHHHHHHHhccCCCCch-HHHHHHHHHHHhH
Q 002400 365 RLLPALVGAMDDFQNPR-VQAHAASAVLNFS 394 (927)
Q Consensus 365 ~il~~ll~~l~~~~~~~-v~~~a~~al~~l~ 394 (927)
.++..+.+.+.|...+. ..-.|...|..+.
T Consensus 309 ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 309 RITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 77777888887733333 2455666665553
No 235
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.04 E-value=0.81 Score=40.98 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHh-hHHHHHHHhccC--CCCchHHHHHHHHHHHhHhcC
Q 002400 321 LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHH-RLLPALVGAMDD--FQNPRVQAHAASAVLNFSENC 397 (927)
Q Consensus 321 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~il~~ll~~l~~--~~~~~v~~~a~~al~~l~~~~ 397 (927)
-...+..+.+.|++++|.++..|+..+..++.++++.+...+.. .++..+.+.+.. ..++.|+..+...+......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34678888899999999999999999999999999877555544 566666666654 246789999999999998877
Q ss_pred CC
Q 002400 398 TP 399 (927)
Q Consensus 398 ~~ 399 (927)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 64
No 236
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=2 Score=44.95 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=102.6
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK 222 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 222 (927)
.-+..++..+.+-+..+|..++.-+..+....+..+..+...+++-+...+.|.+..||....+.+-.++ .....
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i-~~~~~---- 132 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLI-LPACK---- 132 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHH-hhcch----
Confidence 4566777778899999999999999999988888888888899999999999999999999999988877 43321
Q ss_pred HhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Q 002400 223 ERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSML 278 (927)
Q Consensus 223 ~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll 278 (927)
.....+++.++..+...+..-.++++..++.++.-+++..|..+......+++...
T Consensus 133 e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~ 188 (393)
T KOG2149|consen 133 EDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK 188 (393)
T ss_pred hhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 22566777777777777777778888999999988888776555444444555544
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.95 E-value=3.6 Score=41.11 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=109.5
Q ss_pred hCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc---CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHH
Q 002400 30 MSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS---SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKS 106 (927)
Q Consensus 30 ~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~ 106 (927)
...+++.....-..|.++-..... ..+..++++.. ......+.++..++-...+.. +. ....++.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~-~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~----------~r-~f~~L~~ 78 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNV-CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN----------DR-HFPFLQP 78 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCcc-chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----------ch-HHHHHHH
Confidence 344555666666666665553301 23344444333 444555556665555554433 11 1133333
Q ss_pred HHHH----HHh--h--cchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHh-cCCChHHHHHHHHHHHHhhhhhHHH
Q 002400 107 VLLV----QLQ--N--ETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCL-VTFNDKIQESALLILSRMSQFVSEV 177 (927)
Q Consensus 107 ~Ll~----~l~--~--~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~ 177 (927)
.+.. ... . +.........+..+..|.... | +.|+++++.+..++ ++.++..+..++..+..+|+.---.
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd 156 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-P-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD 156 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-h-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc
Confidence 3333 111 1 223445555567777777764 4 49999999999999 7888889999999999999543222
Q ss_pred HHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCC-chhHHhHHhhHHHHHHHHHHHHhcCChhHH
Q 002400 178 LIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPS-LGEKERFLDLLPLMMRTLTEALNKGNESSA 248 (927)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~ 248 (927)
+. .....+.+-++.+ .+.|-.. +..++ ..++. .-+.+.+..+...++..+++.....+.+..
T Consensus 157 ~~----s~w~vl~~~l~~~~rp~v~~~----l~~l~-~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~ 220 (234)
T PF12530_consen 157 FY----SAWKVLQKKLSLDYRPLVLKS----LCSLF-ALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVA 220 (234)
T ss_pred HH----HHHHHHHHhcCCccchHHHHH----HHHHH-HHhccccCChhhhhHHHHHHHHHHHhhccccccchH
Confidence 22 2334444444433 4444333 33333 22221 113456778888999999998776554333
No 238
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.73 E-value=5.3 Score=45.23 Aligned_cols=133 Identities=11% Similarity=0.165 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 319 KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
.....++|.+...++|.+..++..++..+..+++.+... -.-+.++|.+....-...+..|+..+.-|++.+++.+.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~---~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP---FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH---HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999977532 23455777776654333678899999999999998776
Q ss_pred CccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH
Q 002400 399 PDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAIL 458 (927)
Q Consensus 399 ~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l 458 (927)
.-. .-+.+..++++.+..++.+....+.....++......-.-..+.++|.+..+.
T Consensus 462 ~~~----v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 462 KAA----VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHH----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 332 22333445556666777777766666666654433311112346666666653
No 239
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=93.50 E-value=19 Score=42.06 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=47.8
Q ss_pred CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCC
Q 002400 817 DAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKD 880 (927)
Q Consensus 817 ~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 880 (927)
-++.++-.+++.++..++.+|+....+.+..++...++.+.+ ..+.+++.+.+......+
T Consensus 530 ~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~p----l~~~il~~L~~lv~~~~k 589 (947)
T COG5657 530 LLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAP----LGSEILQLLDNLVEINAK 589 (947)
T ss_pred cHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhh----hHHHHHHHHHHHHHHHcc
Confidence 367788889999999999999999999999999877666654 466788887777765433
No 240
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.49 E-value=4.3 Score=42.04 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=115.8
Q ss_pred CcchhHHHHHHHHHHHHhh--hchHHHHhhHHHHHHHHHhccCCCCH-HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHH
Q 002400 293 APEWQKHHAVLIALAQIAE--GCSKVMIKNLDQVVSMVLNSFQDPHP-RVRWAAINAIGQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~--~~~~~~~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ 369 (927)
..+|..-.+++.-|..... .......++-..+-..+.++|+-.=| -|...|+.+...+.+.++++.....+.-..|.
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~G 101 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPG 101 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHH
Confidence 3678877777776666665 22212223334556677777765533 58899999999999999987767777778888
Q ss_pred HHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 370 LVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 370 ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
++..+.. .+..||-.....+..+.-..++ .+.|.++.++..++..+++.+....+.++..+..+...++.+
T Consensus 102 Lfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 102 LFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 8888887 7788999999999988887776 688999999999999999888999999999999999888875
No 241
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=93.25 E-value=18 Score=40.95 Aligned_cols=292 Identities=15% Similarity=0.188 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHhhhCCCCHH
Q 002400 121 IKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA-HGDTLHEVFSKFLGSNNFD 199 (927)
Q Consensus 121 r~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~ 199 (927)
-..++..+..++....| ..||++=..|++.+-+++.-....+.++=.-++.+...++-. |+..+..++. .+..+.
T Consensus 245 Y~~vl~~Lctfi~~~~~-s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik-~lp~~~-- 320 (559)
T PF14868_consen 245 YQHVLVHLCTFIASLSP-SAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIK-SLPSSS-- 320 (559)
T ss_pred HHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-HcCCcc--
Confidence 34455555555554434 699999999999888888877777777755566555555443 5555555444 343322
Q ss_pred HHHHHHHH-HHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc-cCcHHH-HHHHHHHHHH
Q 002400 200 LRIAALEA-TVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAA-TEPRFL-RKQLVDVVGS 276 (927)
Q Consensus 200 vr~~a~~~-l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~-~~~~~~-~~~l~~ll~~ 276 (927)
.+...+.. +.+++ ..+.++.....+..+-|. .+ ..-.-+|..+.- .-+..+ +....++++.
T Consensus 321 ~~~~~L~~LL~Rl~-~~m~~~~q~~~v~~f~p~-~~--------------~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~ 384 (559)
T PF14868_consen 321 YQLINLSILLRRLF-FLMAPDHQSEFVQDFSPS-AE--------------TENLLLWEGFPLNALSDELRKQIVQEIFTL 384 (559)
T ss_pred hhHhhHHHHHHHHH-HhcCHHHHHHHHHhcCcc-cc--------------ccchHHHHhccHHhCCHHHHHHHHHHHHHH
Confidence 22222222 33333 333221111111111111 00 000222322221 111112 2223334443
Q ss_pred HHHHhhccCchhhhhC--CcchhHHHHHHHHHHHHhhhchH---HH----HhhHHHHHHHHHhccC----CCCHHHHHHH
Q 002400 277 MLQVAEAEAVFPGFLA--APEWQKHHAVLIALAQIAEGCSK---VM----IKNLDQVVSMVLNSFQ----DPHPRVRWAA 343 (927)
Q Consensus 277 ll~~~~~~~~i~~~l~--~~~~~~r~aal~al~~i~~~~~~---~~----~~~l~~l~~~l~~~l~----d~~~~vr~~a 343 (927)
.... ++.+.. .-+|..-.....++++....|.. .+ ...+-+++..+...++ ...+.++...
T Consensus 385 ~~~~------~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~ 458 (559)
T PF14868_consen 385 CFAF------CQKWLSPSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTL 458 (559)
T ss_pred HHHH------HHHhcccCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHH
Confidence 3311 122222 23455544444555444433322 11 1122233444444432 1245666666
Q ss_pred HHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcccc-CchHHHHHHHHHHhcCCCh
Q 002400 344 INAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILT-PYLDGIVSKLLVLLQNGKQ 422 (927)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~l~~l~~~L~~~l~~~~~ 422 (927)
...++-++... .....+.+.+++..+...+...+...++-+.+..++.+.+..-++..+ +-.+.+...+-.+|.+.++
T Consensus 459 ~~lL~l~~~~~-~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~W 537 (559)
T PF14868_consen 459 SLLLSLLSFFI-QLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHW 537 (559)
T ss_pred HHHHHHHHHHH-HhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcH
Confidence 66665544432 222245667777777777755355668889999999888765443333 4566666666667899999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 002400 423 MVQEGALTALASVADSS 439 (927)
Q Consensus 423 ~v~~~a~~al~~l~~~~ 439 (927)
-+...|+++.+.+|+..
T Consensus 538 ll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 538 LLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999998654
No 242
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.21 E-value=1.5 Score=39.68 Aligned_cols=102 Identities=12% Similarity=0.244 Sum_probs=72.8
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLP 368 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~ 368 (927)
.+..++|..--..+-.+..= . ..-...+..+.+.+++.+|.|...|+..+..++.++|..+..+. -..++.
T Consensus 12 ~l~~~dw~~il~icD~I~~~----~----~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 12 KLTSENWGLILDVCDKVKSD----E----NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred cCCCcCHHHHHHHHHHHhcC----C----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34467885443333333221 1 12346778888899999999999999999999999998774332 235667
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
.+.+.+.+..++.|+..+...+....+....
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 7777776645789999999999999887763
No 243
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=92.96 E-value=7.3 Score=43.03 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHH-HHHhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 002400 158 KIQESALLILSRMSQFVSEVLIAHGDTLHE-VFSKFLGSNNFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~l~~~~~~l~~-~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 216 (927)
..|..|..+|+.++...++. ....+.. +|..+|++++.--|..|.-.+..++ ...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa-~~~ 157 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWA-KAC 157 (441)
T ss_pred HHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH-HhC
Confidence 56888999999999887543 2334444 6888899988888888888888888 544
No 244
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.92 E-value=0.56 Score=38.48 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCC
Q 002400 704 DKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGS 767 (927)
Q Consensus 704 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~ 767 (927)
|....+|..++..|..+++.-. ......+.++..++..++|+|+.|--+|+.++..++...++
T Consensus 14 dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4568899999999999999876 23346789999999999999999999999999999987654
No 245
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.91 E-value=3.1 Score=41.32 Aligned_cols=142 Identities=17% Similarity=0.210 Sum_probs=81.0
Q ss_pred cCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhH
Q 002400 242 KGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL 321 (927)
Q Consensus 242 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l 321 (927)
..+++.+..|++.+.+ ++ -+.+++|.++..+.+ .+.+.+ .+-..--..+....++..+..-.+.+|+
T Consensus 209 Es~~~~r~aAl~sLr~----ds-----GlhQLvPYFi~f~~e--qit~Nl--~nl~~LtTv~~m~~sLL~N~~iFvdPY~ 275 (450)
T COG5095 209 ESDEQTRDAALESLRN----DS-----GLHQLVPYFIHFFNE--QITKNL--KNLEKLTTVVMMYSSLLKNKYIFVDPYL 275 (450)
T ss_pred HHHHHHHHHHHHHhcc----Cc-----cHHHHHHHHHHHHHH--HHHHhh--hhHHHHHHHHHHHHHHhcCCceeecHHH
Confidence 3456666667766543 11 234455554422211 111112 2233334445555556555444566888
Q ss_pred HHHHHHHHhcc------CCC----CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC-CchHHHHHHHHH
Q 002400 322 DQVVSMVLNSF------QDP----HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ-NPRVQAHAASAV 390 (927)
Q Consensus 322 ~~l~~~l~~~l------~d~----~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~-~~~v~~~a~~al 390 (927)
.+++|.++.++ +++ +-.+|.-|+..++..+..|+... ...-+.+...+++.+-|.. ....+-.|..++
T Consensus 276 hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y-ktLkPRvtrTllKafLD~~k~~sT~YGalkgl 354 (450)
T COG5095 276 HQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY-KTLKPRVTRTLLKAFLDREKTESTQYGALKGL 354 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh-hhhchHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 89988877654 222 34589999999999998887554 4556667777777766522 234555666777
Q ss_pred HHhHhcC
Q 002400 391 LNFSENC 397 (927)
Q Consensus 391 ~~l~~~~ 397 (927)
..+....
T Consensus 355 s~l~ke~ 361 (450)
T COG5095 355 SILSKEV 361 (450)
T ss_pred hhhchhh
Confidence 6665443
No 246
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=13 Score=46.28 Aligned_cols=240 Identities=12% Similarity=0.096 Sum_probs=136.6
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHH-HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVL-IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK 222 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l-~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 222 (927)
-+..+++-+.-.|+..|..|+..|+.+++.....- ...++.....+.+++.|.+..||......+..++ ..+ .
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~-t~l-----k 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLL-TKL-----K 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHH-----H
Confidence 35556666677788899999999999987654322 2235556666777888999999999999999988 443 1
Q ss_pred HhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHHHhh--ccCc-------hhhhh
Q 002400 223 ERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT--EPRFLRKQLVDVVGSMLQVAE--AEAV-------FPGFL 291 (927)
Q Consensus 223 ~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~l~~ll~~ll~~~~--~~~~-------i~~~l 291 (927)
+...+++..++....-...+.+..+...|...+...-.. .+.....+-+.+.+.+.+++- ++.- -.+..
T Consensus 116 k~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~ 195 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEEL 195 (1312)
T ss_pred HHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHH
Confidence 333444444444333222234455555566555443321 223333344555555555431 1100 11112
Q ss_pred CCcchhHHHHHHHHHHHHhhhchH--HHH---hhHHHH--HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHh
Q 002400 292 AAPEWQKHHAVLIALAQIAEGCSK--VMI---KNLDQV--VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHH 364 (927)
Q Consensus 292 ~~~~~~~r~aal~al~~i~~~~~~--~~~---~~l~~l--~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 364 (927)
.....++...++.++..+....+. ... +....+ -..+.+.+++++|.++.+...++..+...+..........
T Consensus 196 E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~ 275 (1312)
T KOG0803|consen 196 ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKN 275 (1312)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhh
Confidence 222345555667777666532221 111 212222 2567888999999999999999999998776553233333
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHH
Q 002400 365 RLLPALVGAMDDFQNPRVQAHAASAVL 391 (927)
Q Consensus 365 ~il~~ll~~l~~~~~~~v~~~a~~al~ 391 (927)
.+-+.+...+.+ .+ .|......++.
T Consensus 276 ~l~~~~~~~~~~-~d-~~c~~~we~Vl 300 (1312)
T KOG0803|consen 276 YLKPVLLGSIDS-LD-HVCSSMWEKVL 300 (1312)
T ss_pred HhhHHHHccccc-cc-cccHHHHHHHH
Confidence 344444555554 33 44444444433
No 247
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=17 Score=45.34 Aligned_cols=261 Identities=12% Similarity=0.122 Sum_probs=145.8
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc
Q 002400 182 GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT 261 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (927)
++.-+..+++-+...++..+..|+..+..++ ... +.+....++|.+.....+++.+++..++.....++..+...
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli-~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~ 113 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELI-DTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK 113 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhc-ccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 3334445556666678999999999999999 433 23445557888888888988889999999999988888877
Q ss_pred CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc--hHH---HHhhHHHHHHHH-Hh----c
Q 002400 262 EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC--SKV---MIKNLDQVVSMV-LN----S 331 (927)
Q Consensus 262 ~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~--~~~---~~~~l~~l~~~l-~~----~ 331 (927)
..+-+.|++..++|..+-.. .|.+..+-.+|...+......- +.. ..+.+-.++..+ +. .
T Consensus 114 lkk~lsp~LK~li~~wl~~~----------~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~s 183 (1312)
T KOG0803|consen 114 LKKKLSPFLKSLIPPWLGGQ----------FDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDS 183 (1312)
T ss_pred HHHHhhHHHHhhhhhhhhee----------cccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccc
Confidence 77788899999998776221 1233333333333333222100 000 011111111111 11 1
Q ss_pred cCC-----------CCHHHHHHHHHHHHHhHhhhchhHHHH----hHhhH--HHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 332 FQD-----------PHPRVRWAAINAIGQLSTDLGPELQTQ----FHHRL--LPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 332 l~d-----------~~~~vr~~a~~~l~~~~~~~~~~~~~~----~~~~i--l~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
+.| ...+|-..++.++..+....+.+.... -...+ -..+.+.+.+ +.+.++.+....+..++
T Consensus 184 lSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~-k~~~i~~~~~ell~~l~ 262 (1312)
T KOG0803|consen 184 LSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKS-KSPSIKVALLELLLSLI 262 (1312)
T ss_pred cchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcC-CCcchhHHHHHHHHHHH
Confidence 111 235677777888877775554432111 01111 1224455666 88899999999999998
Q ss_pred hcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH----hHHHHHHHHHHHHh
Q 002400 395 ENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK----YYDAVMPYLKAILV 459 (927)
Q Consensus 395 ~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~----~~~~i~~~L~~~l~ 459 (927)
+....-.+++....+.+.+.....+.+ .+-.....++-......++...+ --..+.|.+.+.+.
T Consensus 263 ~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 263 DDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 877543233333333344443333333 33333334444333333333221 11356677777766
No 248
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.68 E-value=0.51 Score=43.53 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHhhc-CCC-----------CCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHH
Q 002400 769 FKPLVGEALSRLDFVIR-HPN-----------ALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLI 836 (927)
Q Consensus 769 ~~~~~~~il~~L~~~l~-~~~-----------~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~ 836 (927)
+.|+++.++|.+..-.. ++. .+.++-..+|..|..|+-.++......+++..++..+...|.. +.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D--~~D 80 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD--EHD 80 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS---HH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC--cHH
Confidence 45677888888876553 221 1124567899999999999999988888899999999999854 455
Q ss_pred HHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCC--------CCcHHHHHHHHHHHHHHHhhCChh----
Q 002400 837 EAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKD--------LVTEQTASRMINLLRQLQQSLPPS---- 904 (927)
Q Consensus 837 e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~---- 904 (927)
-+.-++..+..++...+..+.. +++.++..+...|....+ ...+|....+++++..+....|+.
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred HHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 5677888888998777666655 488888888888853211 223577888888888887777632
Q ss_pred -hHHHHHh
Q 002400 905 -TLASTWS 911 (927)
Q Consensus 905 -~~~~~~~ 911 (927)
.|..+|.
T Consensus 157 ~~~~~f~~ 164 (169)
T PF08623_consen 157 NKWNEFVE 164 (169)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 3666554
No 249
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.45 E-value=18 Score=38.94 Aligned_cols=213 Identities=11% Similarity=0.090 Sum_probs=132.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhhc----------------------CCCCChhhHHHHHHHHHHHHHHhhhhhh
Q 002400 672 IIPALVEALHKEPEIDICASMLDALNESIQ----------------------GKDKTAEERRIAICIFDDVMEHCREAAL 729 (927)
Q Consensus 672 il~~ll~~l~~e~d~~v~~~~l~~l~~~~~----------------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 729 (927)
+.+.+...+-.+. .+++.+.++.+..++. ...+...+|..|+..+-.+++.-+ ...
T Consensus 26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK 103 (371)
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence 3333333444444 8888888887766654 445667899999999999998732 112
Q ss_pred hhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHH
Q 002400 730 KYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 730 ~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 809 (927)
..-..++..++....+++...|..|...+..++...++.+.. .+-++.|.+.+.++. ..+.+.++.++-.++
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~--~gG~~~L~~~l~d~~------~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAE--CGGIRVLLRALIDGS------FSISESLLDTLLYLL 175 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHH--cCCHHHHHHHHHhcc------HhHHHHHHHHHHHHh
Confidence 234567777888788888899999999999888775532211 112344444444432 125556677776666
Q ss_pred hhcCC------CCCHhhHHHHHHhcC-C-CCCcH--HHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCC
Q 002400 810 QFHRD------SIDAAQVVPAWLSCL-P-LKGDL--IEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGK 879 (927)
Q Consensus 810 ~~~~~------~~~~~~~l~~~l~~L-p-~~~d~--~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 879 (927)
..... ...++.++..|.+.- + .+.+. +.-..+-..+..+++..++.+.-. .... +-++-+..+|..
T Consensus 176 d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~-~~~~-~~lksLv~~L~~-- 251 (371)
T PF14664_consen 176 DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS-MNDF-RGLKSLVDSLRL-- 251 (371)
T ss_pred CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee-cCCc-hHHHHHHHHHcC--
Confidence 54322 125777888887762 1 22222 234556677778887776654221 1111 567777888863
Q ss_pred CCCcHHHHHHHHHHHHHHHhh
Q 002400 880 DLVTEQTASRMINLLRQLQQS 900 (927)
Q Consensus 880 ~~~~~~~~~~~~~~l~~~~~~ 900 (927)
+..++|..+..++-.+-.-
T Consensus 252 --p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 252 --PNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred --CCHHHHHHHHHHHHHHHCC
Confidence 4678999999988877643
No 250
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.33 E-value=2.9 Score=37.48 Aligned_cols=101 Identities=11% Similarity=0.230 Sum_probs=71.0
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLP 368 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~ 368 (927)
.+.+++|..-...+-.+.. -+. .-...+..+.+.+++++|.|...|+..+..+..++|+.+..... ..++.
T Consensus 13 ~l~~~dw~~ileicD~In~----~~~----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQAFCEQINK----EPE----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHHHHHHHHHc----CCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 3446788654443333322 111 12356778888999999999999999999999999987754433 35566
Q ss_pred HHHHhccC-----CCCchHHHHHHHHHHHhHhcCC
Q 002400 369 ALVGAMDD-----FQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 369 ~ll~~l~~-----~~~~~v~~~a~~al~~l~~~~~ 398 (927)
.+++.+.. ..++.|+..+...+....+.++
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66666642 2467999999999999888775
No 251
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.24 E-value=29 Score=40.83 Aligned_cols=136 Identities=10% Similarity=0.156 Sum_probs=85.3
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHcc-CCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhh
Q 002400 706 TAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACN-DKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVI 784 (927)
Q Consensus 706 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l 784 (927)
++.+|..++-+++.++-.-+. .....+|.+++.+. .....+|.|.+-++|-++.+.......|+| .+...|
T Consensus 944 ~~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP----~I~~~L 1015 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIP----MIAASL 1015 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhH----HHHHHh
Confidence 345677778888888776554 45568888898887 567789999999999999875544455554 445556
Q ss_pred cCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCccc
Q 002400 785 RHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEIL 857 (927)
Q Consensus 785 ~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~ 857 (927)
.||+ ..+|...+.-+.|++...--.-.-.-++..++..+.-. +.-+..+=-++..+++...|..+
T Consensus 1016 ~Dp~------~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~--edIr~~a~f~~~~vL~~~~P~~f 1080 (1529)
T KOG0413|consen 1016 CDPS------VIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDAN--EDIRNDAKFYISEVLQSEEPNFF 1080 (1529)
T ss_pred cCch------HHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccC--HHHHHHHHHHHHHHHhhcCccch
Confidence 6774 67899999999999875311111112333333333222 22233343445566666656543
No 252
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.18 E-value=2.6 Score=38.12 Aligned_cols=90 Identities=11% Similarity=0.194 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 321 LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 321 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
-...+..+.+.|+++++.|...|+..+..+..++|..+...+ -..++..+.+.+.+..++.|+..+...+......++.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 346788888999999999999999999999999988764332 2345666666665436789999999999999888764
Q ss_pred ccccCchHHHHHHH
Q 002400 400 DILTPYLDGIVSKL 413 (927)
Q Consensus 400 ~~~~~~l~~l~~~L 413 (927)
+ |.++.+.+..
T Consensus 119 ~---~~l~~i~~~y 129 (142)
T cd03569 119 K---PQLKYVVDTY 129 (142)
T ss_pred C---cccHHHHHHH
Confidence 3 4444444333
No 253
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=25 Score=39.74 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=96.3
Q ss_pred hhhhCCcchhHHHHHHHHHHHHhhhc-h----HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh
Q 002400 288 PGFLAAPEWQKHHAVLIALAQIAEGC-S----KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF 362 (927)
Q Consensus 288 ~~~l~~~~~~~r~aal~al~~i~~~~-~----~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 362 (927)
-..++-.|..+|-.|...+-..-... + +.+...++.=...+...|.|+-|.||..|..-+.+....+..-+....
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 35556678888877776665433211 1 123333444455677889999999999998888777665433222233
Q ss_pred HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 363 HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 363 ~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
+..++..+..-+.......||-+....|..+..+=. . -|.++.+++.+-..+.+.+.+||-+++..|..+-
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~-s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL-S--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc-c--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 444555555544432566899888888888775522 1 3567888888888889999999998888777653
No 254
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.00 E-value=4.1 Score=36.86 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGM 482 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 482 (927)
.....+..+.+-|.+.++.++..|+..+..++..+|..|...+ ..++..|..++..........+|.++++.+..-+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4567888888899999999999999999999999999886544 35667777766654433323389999999999888
Q ss_pred hhCcchhhhhHHHHHH
Q 002400 483 AVGKDKFRDDAKQVME 498 (927)
Q Consensus 483 ~~~~~~~~~~~~~i~~ 498 (927)
.++...-.++...+++
T Consensus 119 ~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYK 134 (140)
T ss_dssp HTTTSTTGHHHHHHHH
T ss_pred HHCCCCCchHHHHHHH
Confidence 8754333334344443
No 255
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.87 E-value=0.29 Score=33.11 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=26.8
Q ss_pred hHHHHHHHHccCCChhHHhhHhHHHHHHH
Q 002400 734 TYLPFLLEACNDKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 734 ~ll~~l~~~l~d~~~~vr~~a~~~lg~l~ 762 (927)
..+|.|++.++++++.++.+|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999886
No 256
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.81 E-value=26 Score=40.73 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHHHHHhh-hchHH-------HHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 294 PEWQKHHAVLIALAQIAE-GCSKV-------MIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 294 ~~~~~r~aal~al~~i~~-~~~~~-------~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
.+...|.+|+.+++.+.. .|.+. ...+++.+...+-...++.+...+..++++||.+... .
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~ 477 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------S 477 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------h
Confidence 356789999999999987 33221 1233334444444444555666788899999987642 1
Q ss_pred HHHHHHHhcc-C-CCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcC--CChhHHHHHHHHHHH
Q 002400 366 LLPALVGAMD-D-FQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALAS 434 (927)
Q Consensus 366 il~~ll~~l~-~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~--~~~~v~~~a~~al~~ 434 (927)
.++.+...+. + ..+..+|..|+++|..+.+.++.. +.+.+++.+.+ .+..+|..|+..+..
T Consensus 478 ~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 478 SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 1222222222 2 145789999999999988766532 23334444433 356788877665543
No 257
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.55 E-value=3.4 Score=36.92 Aligned_cols=78 Identities=12% Similarity=0.233 Sum_probs=61.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccCCCCch-HHHHHHHHHHHhHhcCCC
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDDFQNPR-VQAHAASAVLNFSENCTP 399 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~~~-v~~~a~~al~~l~~~~~~ 399 (927)
...+..+.+.|++++|.|...|+..+..+..++|+.+...+ -..++..+...+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 45778889999999999999999999999999998775443 2346677777776633333 999999999988887753
No 258
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=35 Score=42.01 Aligned_cols=228 Identities=13% Similarity=0.131 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHHHHHhccCCC--CCccchHHHHHHHhcCC---ChHHHHHHHHHHHHhhhhhHHHHH-HhHHHHHHHHH
Q 002400 117 NKSIIKKICDAVSELAASVLPD--GDWPELIPFIFQCLVTF---NDKIQESALLILSRMSQFVSEVLI-AHGDTLHEVFS 190 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~l~s~---~~~~r~~al~~l~~l~~~~~~~l~-~~~~~l~~~l~ 190 (927)
..++|..--.++-.|....+.. ..|+.+++.+-...... ..++...|+.+|..++.++-..+. ..+..++..+.
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 4455554445555555443321 24999988887766554 446677889999988877544332 24555565555
Q ss_pred hhhC-CCCHHHHHHHHHHHHHHHHhhCCC-----chh-----------------HHhHHhhHHHHHHHHHHHHhcCChhH
Q 002400 191 KFLG-SNNFDLRIAALEATVNFIMNCLPS-----LGE-----------------KERFLDLLPLMMRTLTEALNKGNESS 247 (927)
Q Consensus 191 ~~l~-~~~~~vr~~a~~~l~~l~~~~~~~-----~~~-----------------~~~~~~~~p~ll~~l~~~l~~~~~~~ 247 (927)
.... ..+..+-..|+..+..+. ..+.+ +++ ......+.=.++..+.++..+.-.++
T Consensus 935 ~fs~QktdlNISltAi~lfWtvs-Dfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVS-DFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHH-HHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 5433 336677777777666544 32211 110 11122233334455555666666788
Q ss_pred HHHHHHHHHHHHccCcH-----HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHH-------HHHHHHHHHHhhhchH
Q 002400 248 AQEALELLIELAATEPR-----FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKH-------HAVLIALAQIAEGCSK 315 (927)
Q Consensus 248 ~~~a~~~l~~l~~~~~~-----~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r-------~aal~al~~i~~~~~~ 315 (927)
+..|+..+..+...... ....++-.++-.++.-.... . -++|.-+ +..+..++.+++-.++
T Consensus 1014 RngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q-----~--~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQ-----N--VSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccccc-----c--hhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 88999988888765432 22333333332222110000 0 1223222 3578888888887665
Q ss_pred HHH---------hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHh
Q 002400 316 VMI---------KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLST 352 (927)
Q Consensus 316 ~~~---------~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 352 (927)
.++ .....++.++.+...|.++.+.-+|..++..+.-
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 432 3345667777788889999999999999887654
No 259
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.25 E-value=0.84 Score=39.12 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=50.0
Q ss_pred chHHHHHHHh-cCCChHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 143 ELIPFIFQCL-VTFNDKIQESALLILSRMSQFVSEV--LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 143 ~ll~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~--l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+++..|..++ .+.++.....|+.=++.++..+|.. +.. --..-..+++.+++++++||..|+.|+..++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~-~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIE-KLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHH-HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHH-hcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5777788777 4556777777888888888877642 111 1224567888999999999999999999987
No 260
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=90.01 E-value=27 Score=36.56 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=124.1
Q ss_pred HHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002400 589 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQL 668 (927)
Q Consensus 589 ~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 668 (927)
..+|..|.+++..+.++.++ .....++.-+.++++. +-.||..|++-|+.+++. .....+.+.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~~------------d~~~rv~d~ 100 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG------------DALSRVNDV 100 (460)
T ss_pred hHHHHHHHHHHHHHHhhCch----hhhHHHHhhhcccccc-chhhHHHHHhccchhccC------------chhhhhHHH
Confidence 56778888888877765443 2345555556677763 778999999999998753 110001111
Q ss_pred HHHH-----HHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhh-hhH-HhHHHHHHH
Q 002400 669 TDYI-----IPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAAL-KYY-DTYLPFLLE 741 (927)
Q Consensus 669 ~~~i-----l~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~-~~ll~~l~~ 741 (927)
+..+ +..|+..... .+...|..++..|..=+-.++..+. .-+ ..++..+..
T Consensus 101 l~qLLnk~sl~~Lf~~~~~----------------------~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikk 158 (460)
T KOG2213|consen 101 LVQLLNKASLTGLFGQIEV----------------------GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKK 158 (460)
T ss_pred HHHHHHHHHHHHHHhhhhh----------------------hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHH
Confidence 1111 1122222111 1345566665555443333333222 111 233444444
Q ss_pred HccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhH
Q 002400 742 ACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQV 821 (927)
Q Consensus 742 ~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~ 821 (927)
.|.|-+.+-=......|+.+-...+-.-..-+..+.+..... .+-++-...+...-|.-++|+-.-+-.....+|-..+
T Consensus 159 al~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~-a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf 237 (460)
T KOG2213|consen 159 ALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGL-ADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKF 237 (460)
T ss_pred HHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhh-hccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHH
Confidence 555433321111112222222222111111122222222111 1111112224557788889887777766666677777
Q ss_pred HHHHHhc-CCCCCc---HHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCC
Q 002400 822 VPAWLSC-LPLKGD---LIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGG 878 (927)
Q Consensus 822 l~~~l~~-Lp~~~d---~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 878 (927)
+..+..+ +|..-| .+-....++.|..+......+.. .+.+|.|++++..++...
T Consensus 238 ~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a---~q~Lpsi~elLk~yMpa~ 295 (460)
T KOG2213|consen 238 VEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAA---RQMLPSIVELLKEYMPAP 295 (460)
T ss_pred HHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHH---HHHHHHHHHHHHHhcccC
Confidence 7777764 465444 45566777887777754422222 357888999888888654
No 261
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.97 E-value=9.1 Score=36.86 Aligned_cols=120 Identities=12% Similarity=0.143 Sum_probs=75.5
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhh
Q 002400 413 LLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDD 492 (927)
Q Consensus 413 L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~ 492 (927)
+-..|+-.-...-..++..++.+....|....|++..++..+.+.-.. ++...|..+=.|+|...+++|++.|-..
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~----~~f~~~~~~e~~lgaAi~amGpe~vL~~ 80 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES----EDFSFRKELEQVLGAAIRAMGPEQVLSI 80 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 344444444556778889999999999988778888777777776433 3367888889999999999998765432
Q ss_pred HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHH
Q 002400 493 AKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQ 546 (927)
Q Consensus 493 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 546 (927)
++ . ++. ..+..++-|...+-.+.+-. .+..+.-|...++|....
T Consensus 81 lP----L--nl~--~~~~~~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 81 LP----L--NLD--NADDSQPGRAWLLPLLRDHI--RNASLSFFVEEFLPLARR 124 (198)
T ss_pred CC----C--Ccc--CCCcCCcccchhHHHHHHhc--cCCChHHHHHHHHHHHHH
Confidence 21 1 111 01122334555555555432 245555566666665543
No 262
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.92 E-value=43 Score=38.68 Aligned_cols=108 Identities=8% Similarity=0.044 Sum_probs=67.2
Q ss_pred CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCC------HHHHHHHHHHHHHhHhhhchh
Q 002400 285 AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPH------PRVRWAAINAIGQLSTDLGPE 357 (927)
Q Consensus 285 ~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~------~~vr~~a~~~l~~~~~~~~~~ 357 (927)
+.+.+++..++..+-+++.-+|..++..... ++.+ ...++.++..|.+.. +.+-.++|.++..+...-...
T Consensus 569 ~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~n 646 (717)
T KOG1048|consen 569 PPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLN 646 (717)
T ss_pred cHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHH
Confidence 3444677778889999999999999887543 2222 245677777776543 466777788887777321111
Q ss_pred HHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 358 LQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 358 ~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
-..-+-..-++.++.......++.+-++|+..|..+-
T Consensus 647 Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 647 AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 1112223345555555554356777788887777664
No 263
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=1 Score=42.16 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhc---CCCcHHHHHHHHHHHHHh
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFG---GSVFKPLVGEALSRLDFV 783 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~---~~~~~~~~~~il~~L~~~ 783 (927)
...|-.|-..+-++..+.|+.+.|.+++++..+-..+...|.++...+...|..+.... |..+.||+.++|+.+...
T Consensus 128 hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 128 HPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred CCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhhh
Confidence 56778888889999999999999999999999999999999899888888888887765 478999999999987643
No 264
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=89.55 E-value=26 Score=35.65 Aligned_cols=194 Identities=13% Similarity=0.186 Sum_probs=116.6
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhh-HH--HHHHhH---HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFV-SE--VLIAHG---DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~-~~--~l~~~~---~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 216 (927)
+++..+++.+...+-..|.-++.++..+...- +. ....|+ +.++..++.+-.+ .+++-..+-..+..++ .+
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEci-rh- 155 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECI-RH- 155 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHH-hh-
Confidence 45566666666666677777777777765431 11 111122 4566666666333 3444444333333333 11
Q ss_pred CCchhHHhHHhhH--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc----HHHHHHHHHHHHHHHHHhhccCchhhh
Q 002400 217 PSLGEKERFLDLL--PLMMRTLTEALNKGNESSAQEALELLIELAATEP----RFLRKQLVDVVGSMLQVAEAEAVFPGF 290 (927)
Q Consensus 217 ~~~~~~~~~~~~~--p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~l~~ll~~ll~~~~~~~~i~~~ 290 (927)
+.+..++ ..-.......++.+.-+++..|+..+.++..... .++..+...+++. +...+
T Consensus 156 ------e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e---------~~~~L 220 (342)
T KOG1566|consen 156 ------EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAE---------VYEKL 220 (342)
T ss_pred ------HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHH---------HHHHH
Confidence 1122211 1112233445566677888888888887765532 3344444444432 22355
Q ss_pred hCCcchhHHHHHHHHHHHHhhhchH--HHHhhHH--HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 291 LAAPEWQKHHAVLIALAQIAEGCSK--VMIKNLD--QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 291 l~~~~~~~r~aal~al~~i~~~~~~--~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
+.+.++-.|+-+...+|.+.-+.++ .+..|+. .-+..+...|+|++..++-.|+...-.+...-
T Consensus 221 l~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 221 LRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred hcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 6788999999999999998876553 5667776 56678888999999999999998887776643
No 265
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.26 E-value=0.67 Score=31.30 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=25.8
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhH
Q 002400 324 VVSMVLNSFQDPHPRVRWAAINAIGQLS 351 (927)
Q Consensus 324 l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 351 (927)
.+|.++..|.++++.||..|+|+++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999886
No 266
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.10 E-value=35 Score=36.50 Aligned_cols=206 Identities=16% Similarity=0.096 Sum_probs=105.2
Q ss_pred chHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 143 ELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 143 ~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
.++..+..++. ..++......+.+|..=+..+.. ..-+.++..+.+++.+..+.+|..-+.+++..+ ....+...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~---~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~-~~~~~~~~ 97 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS---ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEAL-WESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc---CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-hhccCchH
Confidence 44444444443 34555555555555544433311 123578899999999987779999999999988 42212333
Q ss_pred HHhHHhhHHHHHHHHHHHHhcCChhH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCch-h-hhhCC-c
Q 002400 222 KERFLDLLPLMMRTLTEALNKGNESS----AQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVF-P-GFLAA-P 294 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~~l~~~~~~~----~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i-~-~~l~~-~ 294 (927)
......++|.+++.+.+...++-... ...+.-++. +.......... .......+..-.++.++ . +..+. .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~--~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDS--KNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhh--hhhhhhhhccCCCcchhcCHHHHhccC
Confidence 45667888999998888776543321 111221221 11100000000 11111111000111111 0 11111 1
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhh-HHHHHHHHHhccCCC--CHHHHHHHHHHHHHhHhhhc
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKN-LDQVVSMVLNSFQDP--HPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~-l~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~ 355 (927)
+...-.-.+.++..+..+........ ...+-..++..+.++ .+.||..|..++.++....+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 22223334445555554444322222 234555566666666 89999999999998876543
No 267
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=1.8 Score=40.60 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=71.4
Q ss_pred HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH---h
Q 002400 363 HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 439 (927)
Q Consensus 363 ~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~---~ 439 (927)
+...+|.+...|.+ .+...+-.|-.-+..+....+ +.+.|.++.++..+-..|...+..+...++.+|..++.. +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 44667777777776 444555555555666666666 446699999999999999999999999999888887644 5
Q ss_pred hhhhHHhHHHHHHHHHHH
Q 002400 440 QGQFQKYYDAVMPYLKAI 457 (927)
Q Consensus 440 ~~~~~~~~~~i~~~L~~~ 457 (927)
|..+.||+.+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 578999999999988665
No 268
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.05 E-value=8.4 Score=45.41 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=80.0
Q ss_pred HHHHHHHHHhc---CCChhHHHHHHHHHHhhcccCccc-------cccccccCHhHHHHHHHHHHHHHhhcchhhHHHHH
Q 002400 55 FALNLSRMLSS---SSLPECRAMSAILLRKHLTRDDST-------SFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKI 124 (927)
Q Consensus 55 ~~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~-------~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~ 124 (927)
++..+..++.. ..++.+|..|.+.+-..+.+.-.. ......+.......+...+-.+... .+..-+..+
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 510 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR-GDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT-T-HHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc-cCHHHHHHH
Confidence 44444455543 345677877777777766553000 1112334444444444444433343 355666677
Q ss_pred HHHHHHHHhccCCCCCccchHHHHHHHhcCC---ChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC--CHH
Q 002400 125 CDAVSELAASVLPDGDWPELIPFIFQCLVTF---NDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN--NFD 199 (927)
Q Consensus 125 ~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~---~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~--~~~ 199 (927)
..+++.+.. |..++.+...+.+. +..+|..|+.+|..+....++. +.+.++..+.+. +.+
T Consensus 511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HH
T ss_pred HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChh
Confidence 778877632 56788888877665 5688999999999887777654 344444444443 788
Q ss_pred HHHHHHHHHHHH
Q 002400 200 LRIAALEATVNF 211 (927)
Q Consensus 200 vr~~a~~~l~~l 211 (927)
+|.+|+..+...
T Consensus 576 vRiaA~~~lm~~ 587 (618)
T PF01347_consen 576 VRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999998665553
No 269
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.94 E-value=34 Score=36.15 Aligned_cols=211 Identities=13% Similarity=0.162 Sum_probs=116.8
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhccCCC----------CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh--H
Q 002400 108 LLVQLQNETNKSIIKKICDAVSELAASVLPD----------GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV--S 175 (927)
Q Consensus 108 Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~----------~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~--~ 175 (927)
|+..|..- +-+.|+.++.+.+.+.+..... ..||+++..|+....+++.. ..+-..|..++.+- .
T Consensus 81 Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia--l~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 81 LIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA--LNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH--HHHHHHHHHHTTSHHHH
T ss_pred HHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc--chHHHHHHHHHhhHHHH
Confidence 44444443 4456666666666666654331 35788888888877765542 22333444444321 1
Q ss_pred HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002400 176 EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELL 255 (927)
Q Consensus 176 ~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l 255 (927)
..+ -+ +..+-.+.+..+.++-+|-..|...+..++ ..= .+-..+.+......+......++.+++--...+++..+
T Consensus 158 ~~i-L~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~ll-t~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 158 KII-LY-SECFWKFFKYVQLPNFDIASDAFSTFKELL-TRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHH-HT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHH-HSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHH-hC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHH-hcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 111 11 112223556777889999999999998877 321 11122344555666777777788888888899999999
Q ss_pred HHHHccCc--HHHHHHHH--HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH------HHHhhHHHHH
Q 002400 256 IELAATEP--RFLRKQLV--DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK------VMIKNLDQVV 325 (927)
Q Consensus 256 ~~l~~~~~--~~~~~~l~--~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~------~~~~~l~~l~ 325 (927)
.++..+.. .++..++. .-+.. +..+++|+.-..+.-|...+-..+....+ .+...-+.++
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl----------~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl 303 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKL----------MMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLL 303 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHH----------HHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHH
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHH----------HHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 99986543 23333332 22222 33566777888888888888877765433 1222334455
Q ss_pred HHHHhccCCC
Q 002400 326 SMVLNSFQDP 335 (927)
Q Consensus 326 ~~l~~~l~d~ 335 (927)
..+.....|.
T Consensus 304 ~fl~~f~~~~ 313 (335)
T PF08569_consen 304 RFLKDFHTDR 313 (335)
T ss_dssp HHHHTTTTT-
T ss_pred HHHHhCCCCC
Confidence 5555544443
No 270
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.67 E-value=30 Score=35.12 Aligned_cols=188 Identities=22% Similarity=0.282 Sum_probs=107.4
Q ss_pred hHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC--------cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcc
Q 002400 224 RFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE--------PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPE 295 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--------~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~ 295 (927)
.|..+.+.+++.+.. . .....+++++..+.... ...+--.+-..+|.++..++++ .-+. ++
T Consensus 61 ~f~Glq~Ll~KGL~S----s--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~----~~i~-~~ 129 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRS----S--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP----NPIQ-PD 129 (262)
T ss_pred CchhHHHHHhCccCC----C--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccc----cccc-cc
Confidence 445555555444432 1 12234556666655321 1233345556777777555443 0011 12
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhc
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAM 374 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l 374 (927)
...+ .....|+.+++..+. +.+..++....++ .++...-++.. +..+.+.+. ..+-.+++..+++.+
T Consensus 130 ~~~~-~~A~~La~~a~~~~~---~~La~il~~ya~~~fr~~~dfl~~v----~~~l~~~f~----P~~~~~~l~~Ll~lL 197 (262)
T PF14225_consen 130 QECI-EIAEALAQVAEAQGL---PNLARILSSYAKGRFRDKDDFLSQV----VSYLREAFF----PDHEFQILTFLLGLL 197 (262)
T ss_pred HHHH-HHHHHHHHHHHhCCC---ccHHHHHHHHHhcCCCCHHHHHHHH----HHHHHHHhC----chhHHHHHHHHHHHH
Confidence 3333 344666666654332 4567777655443 44433333322 222223222 244567788888999
Q ss_pred cCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 375 DDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
.+ +.+.+|......|..+....+-. .|+-.+++..+.+++++... .+|+..+-.+....|
T Consensus 198 ~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 198 EN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred hC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 88 88899999999999999887644 57888999999999987654 445555555555444
No 271
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=17 Score=39.64 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhccC
Q 002400 299 HHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMDD 376 (927)
Q Consensus 299 r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~~ 376 (927)
--|++.+|-+++....-.-....+ .+.+.+++.|.+|+.+|...+.-.+..+.-.+.+-- .. .-..++..+.+.+..
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhhc
Confidence 345666777776654432222222 577888889999888887766665555443332211 12 233466666666666
Q ss_pred CCCchHHHHHHHHHHHhHhcCCCc-cccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 377 FQNPRVQAHAASAVLNFSENCTPD-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 377 ~~~~~v~~~a~~al~~l~~~~~~~-~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
++..+|....|.+..+.-++..+ .+++....=++.++...+++.+.|++++++.+.++..
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 67789999999999888777643 3334444447888889999999999999999999864
No 272
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.44 E-value=45 Score=36.98 Aligned_cols=245 Identities=11% Similarity=0.067 Sum_probs=130.5
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhC-CCchhHHhHHh
Q 002400 149 FQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCL-PSLGEKERFLD 227 (927)
Q Consensus 149 ~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~ 227 (927)
++-.+.....+|+....++.-.. .+.|...+..++..++.+-..+ .+-...++.+..|+ .+. ++..+ -..
T Consensus 17 f~k~Q~s~aGhrk~~a~l~~~~t---~~~f~~~flr~vn~IL~~Kk~~--si~dRil~fl~~f~-~Y~~~~dpe---g~~ 87 (885)
T COG5218 17 FNKIQQSSAGHRKSLAELMEMLT---AHEFSEEFLRVVNTILACKKNP--SIPDRILSFLKRFF-EYDMPDDPE---GEE 87 (885)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHH---HHhhHHHHHHHHHHhhccccCC--CcHHHHHHHHHHHH-HhcCCCChh---hhH
Confidence 33333334455554444443332 2234444555666666554443 34445567777787 543 22211 145
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHH
Q 002400 228 LLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALA 307 (927)
Q Consensus 228 ~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~ 307 (927)
++..++..+...+++++..++..++.++.-+...-..+-......++..+. +.+-|-...+|.-|+.+|.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~----------~R~~DRE~~VR~eAv~~L~ 157 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLS----------ERLFDREKAVRREAVKVLC 157 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH----------HHHhcchHHHHHHHHHHHH
Confidence 566666666666678889999999988877765432222222222232222 3334667889999999998
Q ss_pred HHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHH-
Q 002400 308 QIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHA- 386 (927)
Q Consensus 308 ~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a- 386 (927)
..-+...+.- .....++-.++ -+||+..||++|+.-+.. -+...|.+++...| -+..-|.-.
T Consensus 158 ~~Qe~~~nee-n~~~n~l~~~v--qnDPS~EVRr~allni~v-------------dnsT~p~IlERarD-v~~anRr~vY 220 (885)
T COG5218 158 YYQEMELNEE-NRIVNLLKDIV--QNDPSDEVRRLALLNISV-------------DNSTYPCILERARD-VSGANRRMVY 220 (885)
T ss_pred HHHhccCChH-HHHHHHHHHHH--hcCcHHHHHHHHHHHeee-------------CCCcchhHHHHhhh-hhHHHHHHHH
Confidence 8775433211 11122222222 278999999998765532 12345666666666 333333322
Q ss_pred HHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 387 ASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 387 ~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
..+|..+.+.+..+ +.+++- ++. -.+.+....++.++..+|..
T Consensus 221 ~r~Lp~iGd~~~ls-i~kri~-l~e---wgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 221 ERCLPRIGDLKSLS-IDKRIL-LME---WGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred HHHhhhhcchhhcc-ccceeh-hhh---hcchhhhhhHHHHHHHHHHH
Confidence 25566665544322 344433 222 23455566777776665544
No 273
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.24 E-value=5.6 Score=35.96 Aligned_cols=79 Identities=14% Similarity=0.290 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccCCCCch---HHHHHHHHHHHhHhc
Q 002400 321 LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDDFQNPR---VQAHAASAVLNFSEN 396 (927)
Q Consensus 321 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~~~---v~~~a~~al~~l~~~ 396 (927)
-...+..+.+.|.+++|.++..|+..+..+..++|+.+...+ -..++..+.+.+.+..... |+..+...+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999988775433 2235666666555423333 999999999999888
Q ss_pred CCC
Q 002400 397 CTP 399 (927)
Q Consensus 397 ~~~ 399 (927)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 753
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.07 E-value=7.9 Score=35.07 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhC
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLG 194 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~ 194 (927)
+...--.+|+.|.. . + ..=.+.+..|...+++.++++...|+.+|..+.+.++..|...+ ..++.-+.+.+.
T Consensus 17 dw~~il~icD~I~~----~-~-~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~ 90 (144)
T cd03568 17 NWGLILDVCDKVKS----D-E-NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIN 90 (144)
T ss_pred CHHHHHHHHHHHhc----C-C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhc
Confidence 55555566666642 1 1 22256888888889999999999999999999999998765433 467777777777
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhCCC
Q 002400 195 S-NNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 195 ~-~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
+ .+..|+..++..+..+. ..+.+
T Consensus 91 ~~~~~~Vk~kil~li~~W~-~~f~~ 114 (144)
T cd03568 91 DRVHPTVKEKLREVVKQWA-DEFKN 114 (144)
T ss_pred ccCCHHHHHHHHHHHHHHH-HHhCC
Confidence 7 58899999999999998 76653
No 275
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.69 E-value=1.3e+02 Score=41.49 Aligned_cols=278 Identities=17% Similarity=0.176 Sum_probs=134.8
Q ss_pred HHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCC------------
Q 002400 617 VAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEP------------ 684 (927)
Q Consensus 617 ~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~------------ 684 (927)
+++.+...+..+ +..++.....++..+......... .....+..+++..+++.+.+.+.++.
T Consensus 985 ~ldal~~~l~~~-~~~~~~~g~~~l~~i~~~~~~~l~-----~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~ 1058 (3550)
T KOG0889|consen 985 FLDALVESLSHE-NSEMRPAGVRALKVIFSTSTLILG-----SPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIK 1058 (3550)
T ss_pred HHHHHHHHHhcc-chhhhhhHHHHHHHHHHHHHHhhc-----CcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceee
Confidence 455566666643 678888888888888766543321 11223355667777777666654422
Q ss_pred -----hH-----HHHHHHHHHHHHhhc-CCCCChh-hHHHHHHHHHHHHHHh----hhhh--hhhHHhHHHHHHHHccCC
Q 002400 685 -----EI-----DICASMLDALNESIQ-GKDKTAE-ERRIAICIFDDVMEHC----REAA--LKYYDTYLPFLLEACNDK 746 (927)
Q Consensus 685 -----d~-----~v~~~~l~~l~~~~~-~~~~~~~-~r~~a~~~l~~l~~~~----~~~~--~~~~~~ll~~l~~~l~d~ 746 (927)
.+ +....+++++-..+. ...+... .-..+-.++-++...+ +... ......++..+...+.++
T Consensus 1059 ~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~np 1138 (3550)
T KOG0889|consen 1059 CLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNP 1138 (3550)
T ss_pred eehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 01 111222222222222 1111111 1112222333333322 1111 124567788888899999
Q ss_pred ChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHH-HHhhcCCCCCCchhhhHHHHHHHHHHHH---HhhcCCCCC-HhhH
Q 002400 747 HPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRL-DFVIRHPNALHSDNVMAYDNAVSALGKI---CQFHRDSID-AAQV 821 (927)
Q Consensus 747 ~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L-~~~l~~~~~~~~~~~~~~~na~~al~~l---~~~~~~~~~-~~~~ 821 (927)
++.||..+-..|..+.+..+..+...+...-+.+ .+.+..+... .-+...++-+..+ +...|.... -+++
T Consensus 1139 N~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~-----~p~~~qig~vd~~~fC~~l~p~~f~~~~~l 1213 (3550)
T KOG0889|consen 1139 NSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRA-----LPFTIQIGHLDAITFCLSLGPCLFDFTEEL 1213 (3550)
T ss_pred chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccccc-----CCHHHHhhhHHHHHHHHHcCCcccCchHHH
Confidence 9999999999999999988755544444333333 3333333210 0111122222221 222344332 1111
Q ss_pred HH--HHHhcC--------------CCCCcHHH----HHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCC
Q 002400 822 VP--AWLSCL--------------PLKGDLIE----AKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDL 881 (927)
Q Consensus 822 l~--~~l~~L--------------p~~~d~~e----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 881 (927)
.- .++..| .......- +..+++.++......+-....+ ...-++++.+|...+.+.
T Consensus 1214 ~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~-~~~r~kii~v~fk~l~~~--- 1289 (3550)
T KOG0889|consen 1214 YRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQH-AELREKIIAVFFKSLYKR--- 1289 (3550)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhh-hhhhhHHHHHHHHHHcCC---
Confidence 11 222222 11111111 4567777766554332211111 124678888888888643
Q ss_pred CcHHHHHHHHHHHHHHHhh---CChhhHHHHH
Q 002400 882 VTEQTASRMINLLRQLQQS---LPPSTLASTW 910 (927)
Q Consensus 882 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~ 910 (927)
..|+-......++..-+. +|.+.|+...
T Consensus 1290 -~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~l 1320 (3550)
T KOG0889|consen 1290 -SSELIEVALEGLRKVLAQDVKLPKELLQSHL 1320 (3550)
T ss_pred -hHHHHHHHHHHHHhhhhccccccHHHHHhhH
Confidence 456666665555554433 4555555433
No 276
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=31 Score=43.39 Aligned_cols=252 Identities=14% Similarity=0.150 Sum_probs=143.8
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH-HHH---HhHHHHHHHHHh
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE-VLI---AHGDTLHEVFSK 191 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~-~l~---~~~~~l~~~l~~ 191 (927)
.+..||..+.+|++.- .+.-|..++..+-......+....+.+...+..+.....+ .+. ..+...++.+..
T Consensus 1049 ~s~~Irelv~rC~~~n-----ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSN-----IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred CcchhHHHHHhhhhhh-----hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 4667888888888721 1246999999998888888888888888888866554433 222 223444555554
Q ss_pred hhCCC-CHHHHHHHHHHHHHHHHhhCCCc---hh--------HH-hHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 002400 192 FLGSN-NFDLRIAALEATVNFIMNCLPSL---GE--------KE-RFLDLLPLMMRTLTEALNKGNESSAQEALELLIEL 258 (927)
Q Consensus 192 ~l~~~-~~~vr~~a~~~l~~l~~~~~~~~---~~--------~~-~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l 258 (927)
...+. .......+++.+..++ ..+.+. .. .. ....++|.+.. +..++.....+++..+++.+..+
T Consensus 1124 F~~~~~~~~~s~~aI~~lr~ca-~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~-ls~i~~~~~~~vr~~al~vlF~i 1201 (1514)
T KOG0929|consen 1124 FTKNLGFPDDSLNAIRFLRLCA-LKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQ-LSKIINDYRLEVRKRALEVLFDI 1201 (1514)
T ss_pred HHHhcCCCccchHHHHHHHHHH-HHhccccchhhcccccccccccceeeeehhHhh-hhHHhhccHHHHHHHHHHHHHHH
Confidence 44432 4445555665555555 333221 00 01 12234444333 33333345677888899988888
Q ss_pred HccCcHHHHH-HHHHHHHHHHHHhhccC-chhhhhCCcchhHHHHHHHHHHHHhh---hchHHHHhhHHHHHHHHHhccC
Q 002400 259 AATEPRFLRK-QLVDVVGSMLQVAEAEA-VFPGFLAAPEWQKHHAVLIALAQIAE---GCSKVMIKNLDQVVSMVLNSFQ 333 (927)
Q Consensus 259 ~~~~~~~~~~-~l~~ll~~ll~~~~~~~-~i~~~l~~~~~~~r~aal~al~~i~~---~~~~~~~~~l~~l~~~l~~~l~ 333 (927)
....+.-|.+ .-..++..++.++.+-. -.... ...+| .......|+..+++ ...+.+...++.++..+..+.+
T Consensus 1202 l~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~-~~~eW-~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~ 1279 (1514)
T KOG0929|consen 1202 LKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDES-EKDEW-LSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIK 1279 (1514)
T ss_pred HHhhhhhccHHHHHHHHHheeecccccCcccchh-hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7655433322 22333333332221100 00011 22346 34455555555554 3334444556666667777778
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
.++..+-.....|+.++....+..+....+.+++..+.+..+-
T Consensus 1280 ~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1280 QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 8888888888999999888777666556666776666665554
No 277
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.43 E-value=2 Score=39.30 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC---------------cc
Q 002400 337 PRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP---------------DI 401 (927)
Q Consensus 337 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~---------------~~ 401 (927)
+.||...+.++..++....| ...+.+++.+++.+.. ++.........|..+.+.... +.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P----~~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP----QQWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TTSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh----hhCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 35677788888888775433 3466778888887776 455556667777777655431 11
Q ss_pred ccCchHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHH
Q 002400 402 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECI 477 (927)
Q Consensus 402 ~~~~l~~l~~~L~~~l~~~~----~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 477 (927)
+....+.+++.+.+.++... ..+...++.++++.....+....-- ..+++.+.+.+.. ..++..|.+|+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~------~~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQS------PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTS------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCC------HHHHHHHHHhC
Confidence 22345667777777666544 6778888888888877544331111 2477777777632 23577788875
No 278
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.91 E-value=0.88 Score=30.88 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=28.9
Q ss_pred HHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002400 305 ALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAI 347 (927)
Q Consensus 305 al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l 347 (927)
+|+.+.+.-+..+. .+.+...+...+.|+++.||.+|...+
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35555554443221 247888999999999999999998653
No 279
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.89 E-value=40 Score=34.65 Aligned_cols=314 Identities=12% Similarity=0.134 Sum_probs=158.7
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC--CCHHHHHHHHHHHHHHHHhhC
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS--NNFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~ 216 (927)
+..+-++..+. +..+++..+...++.++..+...-|+.+...-. .++...|.+ ++.++-...+.++..-+..
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~---~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~-- 177 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAM---AVVLKLLALKVESEEVTLLTLQWLQKACIM-- 177 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccH---HHHHHHHhcccchHHHHHHHHHHHHHHHHH--
Confidence 45555555544 456777778888899998888777665543322 233344433 3677888888777764411
Q ss_pred CCchhHHhHH--hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC-----cHHHHHHHHH-----HHHHHHHHhhcc
Q 002400 217 PSLGEKERFL--DLLPLMMRTLTEALNKGNESSAQEALELLIELAATE-----PRFLRKQLVD-----VVGSMLQVAEAE 284 (927)
Q Consensus 217 ~~~~~~~~~~--~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----~~~~~~~l~~-----ll~~ll~~~~~~ 284 (927)
++..+..|. +.+|.+.+.+. ..+..+...+....+.-+...+ ......|... ++..+.+.+
T Consensus 178 -hE~nrQ~~m~~~il~Li~~~l~---~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal--- 250 (461)
T KOG4199|consen 178 -HEVNRQLFMELKILELILQVLN---REGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEAL--- 250 (461)
T ss_pred -hHHHHHHHHHhhHHHHHHHHHc---ccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHH---
Confidence 111222222 23343333332 1233356666666666655332 1111122222 233333222
Q ss_pred CchhhhhCCcchhHHHHHHHHHHHHhh---hchHHHHhhHHH--HHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhH
Q 002400 285 AVFPGFLAAPEWQKHHAVLIALAQIAE---GCSKVMIKNLDQ--VVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPEL 358 (927)
Q Consensus 285 ~~i~~~l~~~~~~~r~aal~al~~i~~---~~~~~~~~~l~~--l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~ 358 (927)
+.++ + +..--....+|+.++- -|.. +.+ =++.++..+.|. ...+|..+-.|++.+...-|.+.
T Consensus 251 ---~A~~-d--p~~L~~l~~tl~~lAVr~E~C~~-----I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds 319 (461)
T KOG4199|consen 251 ---QAGI-D--PDSLVSLSTTLKALAVRDEICKS-----IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS 319 (461)
T ss_pred ---HccC-C--ccHHHHHHHHHHHHHHHHHHHHH-----HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc
Confidence 1222 2 3333444555555542 2322 111 135566677774 34566555555555444333322
Q ss_pred HH--HhHhhHHHHHHHhcc-CCCCchHHHHHHHHHHHhHhcCCCccccCchH-HHHHHHHHHhcCCC--hhHHHHHHHHH
Q 002400 359 QT--QFHHRLLPALVGAMD-DFQNPRVQAHAASAVLNFSENCTPDILTPYLD-GIVSKLLVLLQNGK--QMVQEGALTAL 432 (927)
Q Consensus 359 ~~--~~~~~il~~ll~~l~-~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~l~~~L~~~l~~~~--~~v~~~a~~al 432 (927)
.. -.-....+.++..+. ...+|.|...++.++..++-..+... ...++ ..-...++.++..+ ..++..++..|
T Consensus 320 vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs-a~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 320 VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHS-AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchH-HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 122233333333221 11358898999988888876554221 11121 22233444554333 46899999999
Q ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHH
Q 002400 433 ASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVG 481 (927)
Q Consensus 433 ~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~ 481 (927)
.+++....+.-.+.+..=++.|...-.. +++..+..+-.++..++
T Consensus 399 RNiv~rs~~~~~~~l~~GiE~Li~~A~~----~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 399 RNIVVRSAENRTILLANGIEKLIRTAKA----NHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhhhhccchHHhccHHHHHHHHHh----cCccHHHHHHHHHHhcC
Confidence 9999888776667766655555544332 23344444444444443
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.40 E-value=11 Score=34.17 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=69.8
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhh
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFL 193 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l 193 (927)
++...--.+|+.|.. . + ..-.+.+..|...+++.++++...|+.+|..+...++..|...+ ..++..+.+.+
T Consensus 20 ~dw~~ileicD~In~----~-~-~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~ 93 (142)
T cd03569 20 PDLASILEICDMIRS----K-D-VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLI 93 (142)
T ss_pred cCHHHHHHHHHHHhC----C-C-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHH
Confidence 355555566666642 1 1 22356788888889999999999999999999999887665432 45566666655
Q ss_pred C-CCCHHHHHHHHHHHHHHHHhhCCC
Q 002400 194 G-SNNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 194 ~-~~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
. ..++.|+..++..+..+. ..+.+
T Consensus 94 ~~~~~~~Vk~kil~li~~W~-~~f~~ 118 (142)
T cd03569 94 KTTKNEEVRQKILELIQAWA-LAFRN 118 (142)
T ss_pred cccCCHHHHHHHHHHHHHHH-HHhCC
Confidence 5 348899999999999998 77754
No 281
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.16 E-value=12 Score=33.79 Aligned_cols=103 Identities=8% Similarity=0.162 Sum_probs=68.2
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLL 367 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il 367 (927)
.+.+++|..--..+-.+.. .. ..-...+..+.+.++ ++++.|...|+..+..+..++|..+..+.. ..++
T Consensus 13 ~l~~~dw~~ileicD~In~----~~----~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 13 SLQSEDWGLNMEICDIINE----TE----DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCCcCHHHHHHHHHHHhC----CC----CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 3456788654433333322 11 123456777888887 478999999999999999999987753322 3455
Q ss_pred HH-HHHhccCC--CCchHHHHHHHHHHHhHhcCCCc
Q 002400 368 PA-LVGAMDDF--QNPRVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 368 ~~-ll~~l~~~--~~~~v~~~a~~al~~l~~~~~~~ 400 (927)
.. +.+.+... ....|+..+...+....+.++.+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 54 56666531 23589999999999998887643
No 282
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=1.1e+02 Score=38.73 Aligned_cols=183 Identities=14% Similarity=0.054 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhHhhh-chhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHH
Q 002400 337 PRVRWAAINAIGQLSTDL-GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLV 415 (927)
Q Consensus 337 ~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~ 415 (927)
+.-...++.|.+.++... ++ .....++..+.....++..+++|.++...+..++-...--..+...+++-..+.+
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~~----~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s 1576 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIGH----HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLES 1576 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccch----hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 444556666666655432 32 3444555555544444368899999888777665322111234567888889999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHH
Q 002400 416 LLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 495 (927)
Q Consensus 416 ~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~ 495 (927)
.+.+.+..+|+.|..+++.+.......+.+ ..........+... .+......|+..+|.++-+++ ..+..+.+.
T Consensus 1577 ~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s--~~~i~~HgavlgLgA~VlafP-y~vP~wip~ 1650 (1710)
T KOG1851|consen 1577 LLNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKS--KDEIKAHGAVLGLGAIVLAFP-YVVPLWIPK 1650 (1710)
T ss_pred HHcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhcc--hHHHHhhhhHHHHHHHHHhcc-ccchhhhHH
Confidence 999998899999999999998877655444 11122222221111 223344567888999988887 344444444
Q ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcccc
Q 002400 496 VMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEF 533 (927)
Q Consensus 496 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 533 (927)
.+..+-.. ..+..+++..+-..+..+-+...+++
T Consensus 1651 ~L~~Ls~f----a~e~~~i~~tvkktvseFrrth~D~W 1684 (1710)
T KOG1851|consen 1651 PLMNLSSF----ARESAAIKQTVKKTVSEFRRTHADTW 1684 (1710)
T ss_pred HHHHHHhh----cCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44333221 11234566666655555554444433
No 283
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.90 E-value=21 Score=41.94 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH-hHHHHHHHHcc-CCChhHHhhHhHHHHHHHhhcCCC
Q 002400 691 SMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD-TYLPFLLEACN-DKHPDVRQAAVYGIGVCAEFGGSV 768 (927)
Q Consensus 691 ~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~-d~~~~vr~~a~~~lg~l~~~~~~~ 768 (927)
.+++.+.+++. .+..|..++..||.++..-+..+..... .+++.+++++. |.+..+-..|+.+|-.+.-+.+..
T Consensus 70 ~~~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 70 HLFDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHHc----CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 34556666663 4678999999999999998888777655 78889999986 888899899999999998888888
Q ss_pred cHHHHHHHHHHHHHhhc
Q 002400 769 FKPLVGEALSRLDFVIR 785 (927)
Q Consensus 769 ~~~~~~~il~~L~~~l~ 785 (927)
+.+|++.++.....++.
T Consensus 146 l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 146 LGPHLPDLFNIFGRLLS 162 (668)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999988888773
No 284
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.72 E-value=5.2 Score=35.77 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=59.1
Q ss_pred hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchH-HHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHh
Q 002400 364 HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD-GIVSKLLVLLQN---GKQMVQEGALTALASVADSS 439 (927)
Q Consensus 364 ~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~l~~~L~~~l~~---~~~~v~~~a~~al~~l~~~~ 439 (927)
...+..|.+.+.+ +++.++..|...|..++.+|+......+.. ..+..+..++.. .+..|+..++..+...+...
T Consensus 36 k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 36 KEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4677888889998 899999999999999999998533222222 455556676654 46789999999999988777
Q ss_pred hh
Q 002400 440 QG 441 (927)
Q Consensus 440 ~~ 441 (927)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 65
No 285
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.42 E-value=13 Score=32.27 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh-HHHHHHH-----hccCCCCchHHHHHHHHHHHh
Q 002400 320 NLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR-LLPALVG-----AMDDFQNPRVQAHAASAVLNF 393 (927)
Q Consensus 320 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-il~~ll~-----~l~~~~~~~v~~~a~~al~~l 393 (927)
....++..+.+.+.+++|++..-|+..+..+..++++.+....... ++..++. ......+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999988774433222 2222322 111114678888888776654
No 286
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=85.37 E-value=85 Score=36.98 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh
Q 002400 155 FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNC 215 (927)
Q Consensus 155 ~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 215 (927)
........++.++..+...+.+++..+...++.++...|.+..++++..++.++..|+ ..
T Consensus 68 ~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~-~i 127 (819)
T KOG1877|consen 68 ERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFA-NI 127 (819)
T ss_pred ccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHH-hh
Confidence 4444556788888888888888887678899999999999889999999999999999 54
No 287
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=85.35 E-value=7.3 Score=32.86 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 315 KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 315 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
+.+.++++.++.++..++.+-.+.||..++..+..+.+.++......+...+++..+..+..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999999999999998874467888899998888876
No 288
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=85.29 E-value=8 Score=32.60 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=55.5
Q ss_pred hhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCC-cHHHHHHHHHHHHHhhcCC
Q 002400 726 EAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSV-FKPLVGEALSRLDFVIRHP 787 (927)
Q Consensus 726 ~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~-~~~~~~~il~~L~~~l~~~ 787 (927)
+.+.||++.++..+...|..=.++||.-+...|..+.++.|+. +..+...+++....++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999999999999999999987 7788899999999999755
No 289
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=85.29 E-value=1.5 Score=35.62 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 355 (927)
..|.+++..|+++....+..+.+++++++..+.+..+| ...++.++-.+++.|-..-.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 57899999999999999988888999999999988887 56788899999998876433
No 290
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=85.27 E-value=56 Score=34.85 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=70.7
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHH---H-HhhHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKV---M-IKNLDQVVSMVLN-SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH 363 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~---~-~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 363 (927)
.++.+.+....-++..++|..+..-... + +..+..+++.+.+ .-.|.+.+++++++.++..++--.... ..+.
T Consensus 322 sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk--a~~~ 399 (604)
T KOG4500|consen 322 SWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK--AHFA 399 (604)
T ss_pred HHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch--hhcc
Confidence 6667788888899999999999864432 2 2445666776665 456778899999999999887522211 2333
Q ss_pred h-hHHHHHHHhccCCCCchHHHHHHHHHHHhHhc
Q 002400 364 H-RLLPALVGAMDDFQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 364 ~-~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~ 396 (927)
+ .+...++..+.. ..|+|.-.-...+.-+.+.
T Consensus 400 ~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 400 PAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred ccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhc
Confidence 3 356667777776 6677766666666555443
No 291
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=1.2e+02 Score=38.45 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHH
Q 002400 422 QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 501 (927)
Q Consensus 422 ~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 501 (927)
..+-..++.++++.+.+.++++.|+...++ .... ++....|-.|+..+..+....| +.+.+.++++++++-
T Consensus 1518 ~~v~~~li~~i~~~~~a~~~d~~pl~~k~l-------~~tr-ss~~~~r~~ai~~~~~l~~~lg-e~~~~lL~q~iPfLa 1588 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVADKDDLKPLNQKIL-------KKTR-SSSRKARYLAIIQVKLLYTKLG-ENVIVLLPQSIPFLA 1588 (1621)
T ss_pred hHHHHHHHHHHHhhccCChhhhHHHHHHHH-------HHhc-cccHHHHHHHHHHHHHHHHHhc-chhHHhhhhhhHHHH
Confidence 446667778888888777777666555443 2222 2456788889999999999999 789999999999988
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHhccccccch
Q 002400 502 SLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYM 537 (927)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 537 (927)
.+... .++.+...+...+..+-..+|+.|..|+
T Consensus 1589 EL~ED---~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1589 ELMED---EDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHHhh---hHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 86543 2344555555556666667787776653
No 292
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.25 E-value=27 Score=31.18 Aligned_cols=79 Identities=18% Similarity=0.092 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGM 482 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 482 (927)
.-...+..+.+-+++.++.++..|+..+..++..+|..|...+ ..++..|...+..... ...++.++++.+..-+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 3456778888888999999999999999999999999876433 3466777777655332 22389999999988887
Q ss_pred hhC
Q 002400 483 AVG 485 (927)
Q Consensus 483 ~~~ 485 (927)
++.
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 775
No 293
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=84.87 E-value=15 Score=42.95 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChh-HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCH
Q 002400 20 AHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPD-AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAP 98 (927)
Q Consensus 20 ~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~-~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~ 98 (927)
..+.+++..+-|+|..+..++.+.+++.-.+.-+ .++..|++....+....+. -++. .+...
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~---~il~--~~~~P------------ 66 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRAL---EILV--GVQEP------------ 66 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHH---HHHH--hcCCc------------
Confidence 4577888899999999999999988876554322 3566777766543333322 2222 11111
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC---CccchHHHHHHHhc-CCChHHHHHHHHHHHHhhhhh
Q 002400 99 STQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG---DWPELIPFIFQCLV-TFNDKIQESALLILSRMSQFV 174 (927)
Q Consensus 99 ~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~ 174 (927)
..| .+-..|=+.+. .+.-|..+...++.+++...+.- .-..|++.|+.|+. +.+..+...|+.+|..+...+
T Consensus 67 ~~K-~~~~~l~~~~~---~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 67 HDK-HLFDKLNDYFV---KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred cHH-HHHHHHHHHHc---CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 111 11122222222 45667777888888877543310 11468888888886 667888999999999999999
Q ss_pred HHHHHHhHHHHHHHHHhhh
Q 002400 175 SEVLIAHGDTLHEVFSKFL 193 (927)
Q Consensus 175 ~~~l~~~~~~l~~~l~~~l 193 (927)
+..+.++++.++.++...+
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 9999999999999998876
No 294
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.79 E-value=3.9 Score=35.14 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=48.9
Q ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 324 VVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 324 l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
++..|...| .+.++.+...||.=||.++...+....-----..=..+++.+.+ +++.||..|..|+..+.-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 455555555 33478888899999999999875432111112456677888888 999999999999887753
No 295
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=55 Score=40.44 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=96.9
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHH---HHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVS---MVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~---~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ 369 (927)
.+.-.+|...+.++-.+.+.+++.....-+.+++ .+...-...+..+-+-+..++.-++.++-+......+..++..
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidt 932 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDT 932 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHH
Confidence 4567788888899999999888754433333333 3333333345666667788888887766443323444555555
Q ss_pred HHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHH
Q 002400 370 LVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDA 449 (927)
Q Consensus 370 ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~ 449 (927)
+........+..+--.|...+..+.+.... +....++..-......-+.+ .++.+ ....+.
T Consensus 933 l~~fs~QktdlNISltAi~lfWtvsDfl~~---------------km~S~sed~~~~~~~e~~~s---s~~~~-~~l~e~ 993 (1610)
T KOG1848|consen 933 LLVFSRQKTDLNISLTAIGLFWTVSDFLKN---------------KMFSTSEDSCAYNSVEDLYS---SMKSK-EILPEV 993 (1610)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHh---------------hhhccchhhhhhcchhhhcc---cccch-hhhhhH
Confidence 555443323455555666555555443321 01111111111111111111 11111 112344
Q ss_pred HHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhh
Q 002400 450 VMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRD 491 (927)
Q Consensus 450 i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~ 491 (927)
+.=.|...+.+..+++...+|..|..++=.+..+-| .++.+
T Consensus 994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg-~~l~~ 1034 (1610)
T KOG1848|consen 994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHG-SKLGT 1034 (1610)
T ss_pred HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhc-ccCCh
Confidence 555566666666666788999999998888877766 45555
No 296
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=83.95 E-value=3.2 Score=34.16 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=48.8
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCC--CHHHHHHHHHHHHHhHh
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDP--HPRVRWAAINAIGQLST 352 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 352 (927)
+++|..|+-|...++.++....+.....-++++..+.+.+.|+ +...+..|+..|..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4579999999999999999877655555668888888888876 45679999999988754
No 297
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=83.58 E-value=1.3e+02 Score=38.96 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=82.2
Q ss_pred hHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHH
Q 002400 174 VSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALE 253 (927)
Q Consensus 174 ~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~ 253 (927)
+...+..|++.++.+...++.++++.|+.-+......++ ..++. -.-++++..++.. +.++.......|++
T Consensus 425 ~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF-~~fds----~~qqeVv~~Lvth----i~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 425 HSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLF-KEFDS----YCQQEVVGALVTH----IGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH-HSS-H----HHHHHHHHHHHHH----HHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hhccc----hhHHHHHHHHHHH----HcCCcHHHHHHHHH
Confidence 334566789999999999999999999999988888877 66521 0112333333333 33456666678999
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcc-hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc
Q 002400 254 LLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPE-WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF 332 (927)
Q Consensus 254 ~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~-~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l 332 (927)
++..++...+..+.++...+.. ++ .++.+=+ ...|. .+..|+.++-.....-...-+++.-.+-+.|
T Consensus 496 vL~~L~~~~~~~l~~fa~~l~g-iL----------D~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~del~ivIRKQL 563 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPFATFLKG-IL----------DYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQDELHIVIRKQL 563 (1426)
T ss_dssp HHHHHHHH-HHHHHHTHHHHHG-GG----------GGGGG--HHHHHH-HHHHHHHHHHHHSS---HHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH-HH----------HHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhHHHHHHHHHHhh
Confidence 9999998887777766443332 22 2222212 22332 2333433332111101112234444555677
Q ss_pred CCCCHHHHHHH
Q 002400 333 QDPHPRVRWAA 343 (927)
Q Consensus 333 ~d~~~~vr~~a 343 (927)
..+++..+...
T Consensus 564 ss~~~~~K~~G 574 (1426)
T PF14631_consen 564 SSSNPKYKRIG 574 (1426)
T ss_dssp T-SSHHHHHHH
T ss_pred cCCcHHHHHHh
Confidence 77777765543
No 298
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=83.38 E-value=1.5e+02 Score=38.31 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=88.5
Q ss_pred hhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHH
Q 002400 311 EGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAV 390 (927)
Q Consensus 311 ~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al 390 (927)
.+....+..|++.++...-..+..+++.|+.-+......+...+.. -+.++++..|+..+.+ ++..-...|...|
T Consensus 423 ~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~s-g~~~ev~~aL~vL 497 (1426)
T PF14631_consen 423 KGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGS-GNSQEVDAALDVL 497 (1426)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcC-CcHHHHHHHHHHH
Confidence 3344567788999998888889999999999999999888887742 2346788888888766 4443336888888
Q ss_pred HHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc
Q 002400 391 LNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 391 ~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 460 (927)
..++...+ +.+.||. .++..++..+++-+..=-..++..++.++......-...-+.+.-.+.+-+..
T Consensus 498 ~~L~~~~~-~~l~~fa-~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss 565 (1426)
T PF14631_consen 498 CELAEKNP-SELQPFA-TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSS 565 (1426)
T ss_dssp HHHHHH-H-HHHHHTH-HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-
T ss_pred HHHHhccH-HHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcC
Confidence 88887654 4455653 34445556666554333344577777777544332222334444444454443
No 299
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.27 E-value=82 Score=35.12 Aligned_cols=197 Identities=18% Similarity=0.148 Sum_probs=114.4
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCc-cch----HHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDW-PEL----IPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSK 191 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w-~~l----l~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~ 191 (927)
++.+-..+...+..+..++.|++.- .++ +..++..+.+++..+|..++.+|..+.+.+.+--....+.++..+.+
T Consensus 60 ~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 60 NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4445455556666777776664311 334 44455556788999999999999999998877544567778888888
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHccCcHHHHHHH
Q 002400 192 FLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALN-KGNESSAQEALELLIELAATEPRFLRKQL 270 (927)
Q Consensus 192 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~l 270 (927)
.+-|..+-||..|+.+|+.+- ..-.++. .. +.+.+...++ ++..+++..++--+. ..+
T Consensus 140 R~~DRE~~VR~eAv~~L~~~Q-e~~~nee--n~-------~~n~l~~~vqnDPS~EVRr~allni~--vdn--------- 198 (885)
T COG5218 140 RLFDREKAVRREAVKVLCYYQ-EMELNEE--NR-------IVNLLKDIVQNDPSDEVRRLALLNIS--VDN--------- 198 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHH-hccCChH--HH-------HHHHHHHHHhcCcHHHHHHHHHHHee--eCC---------
Confidence 888889999999999999886 3221221 11 1222223332 344555555542211 111
Q ss_pred HHHHHHHHHHhhccCchhhhhCCcchhHHHH-HHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002400 271 VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHA-VLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQ 349 (927)
Q Consensus 271 ~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~a-al~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 349 (927)
...|+++ +...|-+-..|+. --.+|-.+...+...+.+++- .+-.++.|.+..|+.++..++..
T Consensus 199 -sT~p~Il----------ERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~----l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 199 -STYPCIL----------ERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL----LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred -CcchhHH----------HHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh----hhhhcchhhhhhHHHHHHHHHHH
Confidence 1122222 2222323223322 234455554444332333322 55668899999999999888763
No 300
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.53 E-value=9.8 Score=35.20 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=77.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChh
Q 002400 629 FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAE 708 (927)
Q Consensus 629 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~ 708 (927)
..+++|..+.-++..++...+. ...+.+... ++.+..+.+ ..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~-------------~~~~~~~~~----i~~~~~~~~---------------------~d 58 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAARE-------------EFKEKISDF----IESLLDEGE---------------------MD 58 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH----HHHHHCCHH---------------------CC
T ss_pred CCHhHHHHHHHHHHHHHHHhHH-------------HHHHHHHHH----HHHHHcccc---------------------ch
Confidence 4678999999999999754321 123333333 333323321 22
Q ss_pred hHHHHHHHHHHHHHHhhhhhhh-h-HHhHHHHHHHHcc--CCChhHHhhHhHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Q 002400 709 ERRIAICIFDDVMEHCREAALK-Y-YDTYLPFLLEACN--DKHPDVRQAAVYGIGVCAEFG--GSVFKPLVGEALSRLDF 782 (927)
Q Consensus 709 ~r~~a~~~l~~l~~~~~~~~~~-~-~~~ll~~l~~~l~--d~~~~vr~~a~~~lg~l~~~~--~~~~~~~~~~il~~L~~ 782 (927)
....++.++..+....++-... | -+.+++.++..+. .++..+...++.++...+... ...+..++.++|..+.
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~- 137 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY- 137 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH-
Confidence 4556777777777666555444 2 3477777777777 677788888888887776543 2455666655555444
Q ss_pred hhcCCCCCCchhhh-HHHHHHHHHHH
Q 002400 783 VIRHPNALHSDNVM-AYDNAVSALGK 807 (927)
Q Consensus 783 ~l~~~~~~~~~~~~-~~~na~~al~~ 807 (927)
...+ +.. +|-.|...++|
T Consensus 138 --~~~~-----~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 138 --KNSK-----DDSEIRVLAAVGLCK 156 (157)
T ss_dssp --TTCC------HH-CHHHHHHHHHH
T ss_pred --cccc-----chHHHHHHHHHHHhc
Confidence 2221 222 56566666665
No 301
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.35 E-value=5.7 Score=40.00 Aligned_cols=105 Identities=20% Similarity=0.303 Sum_probs=70.0
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCc
Q 002400 326 SMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPY 405 (927)
Q Consensus 326 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 405 (927)
..++..+.+++|.||.+|..-+..+... +......+-...++.+.+.+.+ ..+ ...|+.++.++.....-. ...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l~--~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEELR--KKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHHH--HHH
Confidence 3466778999999999999777666554 3333346667788999999988 555 566778888888765311 123
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 406 LDGIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 406 l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
+..++..++..+.++.+..-...+..+.+++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhc
Confidence 4456666666666665555555555555554
No 302
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.22 E-value=29 Score=30.25 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc-------cCcchhhHHHHHHHHHH
Q 002400 406 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNA-------NDKSNRMLRAKSMECIS 478 (927)
Q Consensus 406 l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-------~~~~~~~lr~~a~~~l~ 478 (927)
+..+++.|.+-|++.++.|+..++..|-.++....+.|...+..-...+....+-. .+.....+|..|-|++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56889999999999999999999999999999988888877766555555543221 12345678888877776
Q ss_pred HHH
Q 002400 479 LVG 481 (927)
Q Consensus 479 ~l~ 481 (927)
.+-
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 653
No 303
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.17 E-value=9.7 Score=34.20 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=68.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHH
Q 002400 331 SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGI 409 (927)
Q Consensus 331 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l 409 (927)
.+.+++|..--..|..+..= + ..-...+..+.+.+++ +++.++..|...|..++++|+...-.... ..+
T Consensus 13 ~l~~~dw~~ileicD~In~~-----~----~~~k~a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~F 82 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKE-----P----EGPQLAVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEVGKFRF 82 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcC-----C----ccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHH
Confidence 34556666555555555421 1 1223567778889998 99999999999999999999854322111 345
Q ss_pred HHHHHHHhcC------CChhHHHHHHHHHHHHHHHhh
Q 002400 410 VSKLLVLLQN------GKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 410 ~~~L~~~l~~------~~~~v~~~a~~al~~l~~~~~ 440 (927)
+..+.+++.. .+..|+..++..|..-+...+
T Consensus 83 l~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 83 LNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5566666642 467899999999888887665
No 304
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.05 E-value=18 Score=31.50 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHH---HHHHHHHhhcCCCC-
Q 002400 714 ICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGE---ALSRLDFVIRHPNA- 789 (927)
Q Consensus 714 ~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~---il~~L~~~l~~~~~- 789 (927)
...+.+|++..-.... -+..++..|.++|++.++.|+.-+...|..++..+++.|...+.. ++..+...-..++.
T Consensus 19 gy~~~Eia~~t~~s~~-~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~ 97 (122)
T cd03572 19 GYLYEEIAKLTRKSVG-SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL 97 (122)
T ss_pred hHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc
Confidence 3455566665544222 356788899999999999999999999999999998777665543 33443333222332
Q ss_pred C-CchhhhHHHHHHHHHHHHH
Q 002400 790 L-HSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 790 ~-~~~~~~~~~na~~al~~l~ 809 (927)
. ...+..||+.|-.++.-|.
T Consensus 98 ~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 98 KGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred cCcchhHHHHHHHHHHHHHHh
Confidence 1 2346788888877776554
No 305
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=81.80 E-value=24 Score=34.60 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=43.1
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
+++++++.-.|++++.++...... ..++.++..+...+.|++..||.+..|+|..++...
T Consensus 127 ~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 127 KWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 555666655566665554333332 567788899999999999999999999999998753
No 306
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.24 E-value=12 Score=39.02 Aligned_cols=103 Identities=14% Similarity=0.248 Sum_probs=73.7
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLP 368 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~ 368 (927)
....++|..-..++--++.--++. ...+..+.++|++.+|.|.-.|+..++.+..+|+..+..+. ..++..
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred ccccccHHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 445678987666555554433332 34677888999999999999999999999999987764332 234445
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCc
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 400 (927)
.|...+.+...+.|+......+....+.+..+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 55555554367899999999999998887654
No 307
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.11 E-value=87 Score=33.93 Aligned_cols=122 Identities=22% Similarity=0.251 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHH
Q 002400 244 NESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQ 323 (927)
Q Consensus 244 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~ 323 (927)
.+.....|+.++..++++-.-.++..-..++..+... +.-++...-...+..|..++--..+...-.-..
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKa----------Ldr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~ 345 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKA----------LDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNG 345 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHH----------HcccchHHHHHHHHHHHHhhhhccchHHHHhcc
Confidence 3445566777788887764333333333444444422 222333333333333333222111111111124
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC
Q 002400 324 VVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 324 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 376 (927)
++..+.+.+.-.+|.+|.+.+..+-.++-..+-.. .-.-..++|.+...+++
T Consensus 346 iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~-KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 346 IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP-KMVNGGLLPHLASLLDS 397 (791)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH-HHhhccchHHHHHHhCC
Confidence 67788888889999999999998877765433211 23445678888888877
No 308
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=80.94 E-value=35 Score=36.09 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=61.5
Q ss_pred HHHHHhhhhhH-HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH-HHhhCCCchhHHhHHhhHHHHHHHHHHHHhc
Q 002400 165 LILSRMSQFVS-EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNF-IMNCLPSLGEKERFLDLLPLMMRTLTEALNK 242 (927)
Q Consensus 165 ~~l~~l~~~~~-~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l-~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~ 242 (927)
.-+..+.+... ..|...+..+..-+..+++++.-+|-..|+..|.+= +...+ ...-.-++|.+.+.+....++
T Consensus 321 ~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li-----~~n~~~ilPiiFpaLyr~sk~ 395 (457)
T KOG2085|consen 321 NELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLI-----SQNAEVILPIVFPALYRNSKS 395 (457)
T ss_pred hhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHH-----HhccceeeehhhHHHHHHHHH
Confidence 33444444432 355556667777788889988889999998887751 10111 011234677777777765433
Q ss_pred C-ChhHHHHHHHHHHHHHccCcHHHHHHHH
Q 002400 243 G-NESSAQEALELLIELAATEPRFLRKQLV 271 (927)
Q Consensus 243 ~-~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 271 (927)
. +..+...+++.+..+.+.++.+|..+..
T Consensus 396 hWN~~i~~l~~nvlk~f~emd~~LFeec~~ 425 (457)
T KOG2085|consen 396 HWNQAIHNLILNVLKTFMEMDPKLFEECLA 425 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 2 2334455667777777777777665554
No 309
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.82 E-value=13 Score=37.55 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=70.5
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+++.+.++.+|.+|+.-+..+..+....+..+-...++.+.+.+++..+ -+-|+.++..++... ......+..++.
T Consensus 10 ~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~~~k 85 (353)
T KOG2973|consen 10 ELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQDLLK 85 (353)
T ss_pred HHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHHHHH
Confidence 5666888999999998776665543344445556788889999988877 445667777777642 232345555777
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
.++..+.+ +........|..|.++.+
T Consensus 86 ~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 86 VLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 77778887 656666777777777754
No 310
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=79.36 E-value=93 Score=33.24 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHh----h-cCCCcHHHHHHHHHHHH
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAE----F-GGSVFKPLVGEALSRLD 781 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~----~-~~~~~~~~~~~il~~L~ 781 (927)
.......+.+|+.=+..++.. .-+.++..+.+++.|..+.+|+.-+.++|.+.. . ......++.+.+++.+.
T Consensus 37 E~aL~~~l~al~~~~~~~~~~---~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 37 EAALSALLSALFKHLFFLSSE---LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCcC---CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 333444455555444444222 345788889999999999999999999999886 1 11234455555555555
Q ss_pred HhhcCCCCCCchhhhHHHHHHHHHHHHHhh--cCCCC-------------CHh--hHHHHHHhcCCCCCcHHHHHHHHHH
Q 002400 782 FVIRHPNALHSDNVMAYDNAVSALGKICQF--HRDSI-------------DAA--QVVPAWLSCLPLKGDLIEAKVVHAQ 844 (927)
Q Consensus 782 ~~l~~~~~~~~~~~~~~~na~~al~~l~~~--~~~~~-------------~~~--~~l~~~l~~Lp~~~d~~e~~~~~~~ 844 (927)
.....|-.... +.. ..++..-+... ....+ +=+ -+-+.+++++ .+.++..-..++
T Consensus 114 ~~~~~p~~~~~-~~~----~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl---~~~~d~~w~~~a 185 (339)
T PF12074_consen 114 EASANPLQSAQ-NGE----LVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL---ASEEDLCWLLRA 185 (339)
T ss_pred HHHhCCCCccc-ccc----HHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc---CCHhHHHHHHHH
Confidence 55555532111 111 11111111100 00000 000 1223445553 345566777788
Q ss_pred HHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCCh
Q 002400 845 LCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPP 903 (927)
Q Consensus 845 l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 903 (927)
+..++...+....+. ......+.+..++... ..+.++|....+.++.+....|.
T Consensus 186 l~~~~~~~~~~~~~~---~~~~~~~a~i~ll~s~--~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 186 LEALLSDHPSELSSD---KSSAWAQAFIYLLCSS--NVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred HHHHHhcchhhhhhh---HHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhChH
Confidence 887775544433331 1245566677766533 34788999999999998888775
No 311
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=78.58 E-value=1.4e+02 Score=35.28 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHH
Q 002400 593 ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 647 (927)
Q Consensus 593 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~ 647 (927)
..|++++..+..+|++....|+..++..+.+++++. +++++..+..++-.++..
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf~~F~~i 127 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN-NDEMQILGTNSFVKFANI 127 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCceeeehhhHHHHHHhh
Confidence 457888999999999999889999999999999987 888988888888777654
No 312
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=78.11 E-value=5.8 Score=30.80 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhchHHHHhhHH--HHHHHHHhcc-CCCCHHHHHHHHHHHHHhHhh
Q 002400 298 KHHAVLIALAQIAEGCSKVMIKNLD--QVVSMVLNSF-QDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~~~~~~~l~--~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~ 353 (927)
.++++++++|.++..... .+.++ .+++.+++.. +.+...+|.+|+.++|-++..
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 567999999999875332 12333 5777777765 567889999999999999874
No 313
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=77.99 E-value=83 Score=31.92 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhcc------cc--cccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002400 592 KATACNMLCCYADELKE------GF--FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNES 663 (927)
Q Consensus 592 k~~a~~~l~~l~~~~~~------~~--~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 663 (927)
...+..+++.++...+. .+ ...+..+-..++..+....|.+.-..+...+..+++.+... +..
T Consensus 64 iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~---------~~~ 134 (255)
T PF10350_consen 64 IKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSS---------NNP 134 (255)
T ss_pred HHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcC---------CCc
Confidence 34567778887765421 11 12355556666666666667777777777777777765321 111
Q ss_pred HHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHH-HHH-HHHHHHHHhhhhhhhhHHhHHHHHHH
Q 002400 664 YVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRI-AIC-IFDDVMEHCREAALKYYDTYLPFLLE 741 (927)
Q Consensus 664 ~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~-a~~-~l~~l~~~~~~~~~~~~~~ll~~l~~ 741 (927)
....+-..-+..+++.+..+. .+.....|+. ++- ++..++..-+..-.+.++..+..|++
T Consensus 135 ~l~~LP~~WL~~~l~~i~~~~------------------~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ 196 (255)
T PF10350_consen 135 ELSELPEEWLDELLEAIESKG------------------QQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLE 196 (255)
T ss_pred hHHHhHHHHHHHHHHHHhccc------------------ccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 133344444555555554431 0111234444 332 33444444433323667777777777
Q ss_pred HccCCCh--------hHHhhHhHHHHHHHhhc--CCCcHHHHHHHHHHHHHhhcCC
Q 002400 742 ACNDKHP--------DVRQAAVYGIGVCAEFG--GSVFKPLVGEALSRLDFVIRHP 787 (927)
Q Consensus 742 ~l~d~~~--------~vr~~a~~~lg~l~~~~--~~~~~~~~~~il~~L~~~l~~~ 787 (927)
....+.. .-+-+|...|..+...+ ++.+.+|+...+..-...+..+
T Consensus 197 ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 197 IAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred HhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6654322 46667778888777764 3678889888887766665543
No 314
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=77.79 E-value=71 Score=31.63 Aligned_cols=167 Identities=15% Similarity=0.125 Sum_probs=95.2
Q ss_pred hHHHHHHHhhcCCCcHHH-HHHHHHHHHHhhcCC--CCCCchhhhHHHHHHHHHHHHHhhcCCCC--C---HhhHHHHHH
Q 002400 755 VYGIGVCAEFGGSVFKPL-VGEALSRLDFVIRHP--NALHSDNVMAYDNAVSALGKICQFHRDSI--D---AAQVVPAWL 826 (927)
Q Consensus 755 ~~~lg~l~~~~~~~~~~~-~~~il~~L~~~l~~~--~~~~~~~~~~~~na~~al~~l~~~~~~~~--~---~~~~l~~~l 826 (927)
+.++..+....+-.+.+| ++.+++.+..+.... ....+....+-...|..+..++..++..+ . +-.++..++
T Consensus 9 l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL 88 (223)
T PF10441_consen 9 LEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLL 88 (223)
T ss_pred HHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHH
Confidence 344444444444444444 455566555555431 11122344555667777888888776654 1 333344444
Q ss_pred hcCC------CC----CcHH--HHHHHHHHHHHHHhccC------------------CcccCCCCCChhHHHHHHHHHhc
Q 002400 827 SCLP------LK----GDLI--EAKVVHAQLCSMVERSD------------------GEILGPNHQYLPKIVTIFAEVLC 876 (927)
Q Consensus 827 ~~Lp------~~----~d~~--e~~~~~~~l~~l~~~~~------------------~~~~~~~~~~~~~i~~~~~~~l~ 876 (927)
..|- .. ...+ +....-+.|..+.+... ...++ +|.+.++.-+.....
T Consensus 89 ~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~---kh~~~lL~~Yi~~~~ 165 (223)
T PF10441_consen 89 RCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLR---KHAPYLLANYISLQL 165 (223)
T ss_pred HHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHH---hHHHHHHHHHHHHHh
Confidence 4443 00 1111 13333344444553300 01112 356666655555554
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhhc
Q 002400 877 GGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILS 926 (927)
Q Consensus 877 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 926 (927)
+. ..++++|..+...+-.+....++...+.+...|+...|...+++++
T Consensus 166 ~~--~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 166 KY--TLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred cC--CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 33 3678999999999999998888777889999999999998888774
No 315
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=77.24 E-value=8.4 Score=38.24 Aligned_cols=99 Identities=8% Similarity=0.106 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhc-C-----CCcHH--HHHHH
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFG-G-----SVFKP--LVGEA 776 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~-~-----~~~~~--~~~~i 776 (927)
...|-.+++.+|.+++.-..++..|+ .+++|..++.|...+.-.|-.|.+-+..+.... | ..... .+..+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~v 189 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMV 189 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHH
Confidence 45789999999999998888877765 389999999999888888888998888877542 1 11111 12334
Q ss_pred HHHHHHhh-cCCCCCCchhhhHHHHHHHHHHHHHhh
Q 002400 777 LSRLDFVI-RHPNALHSDNVMAYDNAVSALGKICQF 811 (927)
Q Consensus 777 l~~L~~~l-~~~~~~~~~~~~~~~na~~al~~l~~~ 811 (927)
+..+..-+ .++ +....+.++.|--|+..+
T Consensus 190 L~~mV~~l~~~p------S~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 190 LNKMVEQLVKQP------SPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHHS--------HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccCC------ChhHHHHHHHHHHHHccC
Confidence 44443322 333 345667888888887653
No 316
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.22 E-value=72 Score=31.39 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=68.6
Q ss_pred CChhhHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhc-C-----CCcHH--HHH
Q 002400 705 KTAEERRIAICIFDDVMEHCREAALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFG-G-----SVFKP--LVG 774 (927)
Q Consensus 705 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~-~-----~~~~~--~~~ 774 (927)
.-...|..+++.+|.+++....++..|+ .+++|..++.+...+...+..|.+-++.+.-.. | ..+.. .+.
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~ 216 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA 216 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH
Confidence 3456799999999999999988888765 489999999999999999999999998876542 2 11111 133
Q ss_pred HHHHHHHHhh-cCCCCCCchhhhHHHHHHHHHHHHHh
Q 002400 775 EALSRLDFVI-RHPNALHSDNVMAYDNAVSALGKICQ 810 (927)
Q Consensus 775 ~il~~L~~~l-~~~~~~~~~~~~~~~na~~al~~l~~ 810 (927)
.++..+..-+ +.| ...+..+++.|.-|+..
T Consensus 217 ~~L~kmv~~l~~~p------s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 217 LVLGKMVFQLVSMP------SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHHHHHhcCC------CHHHHHHHHHHHHHhcC
Confidence 4444444333 333 23456677777766543
No 317
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=77.17 E-value=12 Score=34.35 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-HHhhhhhHHhHHHHHHHHHHHHhccc
Q 002400 426 EGALTALASVA-DSSQGQFQKYYDAVMPYLKAILVNAN 462 (927)
Q Consensus 426 ~~a~~al~~l~-~~~~~~~~~~~~~i~~~L~~~l~~~~ 462 (927)
..|+.....+. ...++-+.|+++.+.|.+.+.+.+..
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 45666666665 44555567999999999998887653
No 318
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.08 E-value=89 Score=31.75 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=83.4
Q ss_pred HHHHHHHhhcc---hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHH-Hh
Q 002400 106 SVLLVQLQNET---NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLI-AH 181 (927)
Q Consensus 106 ~~Ll~~l~~~~---~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~-~~ 181 (927)
..+++.+.++. ........|..++.++.. ...+++-..+....++.- +..-..+..++..+.+.+. .+
T Consensus 114 P~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~f----r~~~dfl~~v~~~l~~~f~P~~ 185 (262)
T PF14225_consen 114 PRLLHAFDDPNPIQPDQECIEIAEALAQVAEA----QGLPNLARILSSYAKGRF----RDKDDFLSQVVSYLREAFFPDH 185 (262)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhCchh
Confidence 33444444442 013445677888888853 345666555555544322 2233455555555555553 34
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 002400 182 GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELA 259 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~ 259 (927)
...++.++...+.++..-+|..+++.+..++ ++.+-. .+..+.++..+.++++.+.+ .+|++++..+.
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll-~~~d~~------~~~~~dlispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLL-PHVDMR------SPHGADLISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh-ccccCC------CCcchHHHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 5678888888998888899999999999999 776432 22556667777777765555 44555555444
No 319
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=76.82 E-value=9.4 Score=31.44 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCC--hhHHhhHhHHHHHHH
Q 002400 704 DKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKH--PDVRQAAVYGIGVCA 762 (927)
Q Consensus 704 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~--~~vr~~a~~~lg~l~ 762 (927)
++.|..|..|..+++.++...+.......+.+...+.+.+.|++ ..++-.|..+|..+-
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999988766677788888888888654 457778888877763
No 320
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.17 E-value=13 Score=30.18 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCC--CCCccchHHHHHHHhcCCChHHHHHHHHHHHH
Q 002400 100 TQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLP--DGDWPELIPFIFQCLVTFNDKIQESALLILSR 169 (927)
Q Consensus 100 ~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~--~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~ 169 (927)
.+..+-..+...+.+.++..+|..+.+++..+...-.. ...|+.++..+-....+++......|+.++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 44455566666666667889999999999988774332 24799999999988888888888888887754
No 321
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=75.35 E-value=81 Score=30.45 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 002400 159 IQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 216 (927)
.-...+.+++.+.+.++....+.+..++..+.+.-.+++...|..+=.+++..+ ..+
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi-~am 72 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAI-RAM 72 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-HHC
Confidence 344566667777777766656667777777777666667778888888888877 655
No 322
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=74.57 E-value=45 Score=30.06 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI 401 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 401 (927)
+++-..+...|.++++.|+..|+.|+-.+-. +.+ .+| -..|...++| ...|.. |..|.-..+.+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l-~pY----~d~L~~Lldd---~~frde----L~~f~~~~~~~~ 80 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYL-TPY----KDNLENLLDD---KTFRDE----LTTFNLSDESSV 80 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHH-HhH----HHHHHHHcCc---chHHHH----HHhhcccCCcCC
Confidence 3455667788899999999999999988643 222 233 3344455555 344433 333332222222
Q ss_pred cc-CchHHHHHHHHHHh
Q 002400 402 LT-PYLDGIVSKLLVLL 417 (927)
Q Consensus 402 ~~-~~l~~l~~~L~~~l 417 (927)
++ .+-+.+++.+++.|
T Consensus 81 I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCHHHHhHHHHHHHHHH
Confidence 33 35556666666554
No 323
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=74.32 E-value=43 Score=35.87 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=84.5
Q ss_pred HHHhhhhccc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 002400 619 PTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALN 697 (927)
Q Consensus 619 ~~l~~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~ 697 (927)
+.+++++..+ ....||..|..+|..++.+.. .+++. ..-+..++...+.
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN------------~d~va---~~~~~~Il~lAK~--------------- 232 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAEN------------RDRVA---RIGLGVILNLAKE--------------- 232 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhh------------hhHHh---hccchhhhhhhhh---------------
Confidence 3444554432 234689999999998876531 11121 1112222322221
Q ss_pred HhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH-hHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHH-H-H
Q 002400 698 ESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD-TYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPL-V-G 774 (927)
Q Consensus 698 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~-~-~ 774 (927)
.+..+.....+++++.++++..+-....+. ..+..++--++..+|.+-+.++.+||.++-+++...+.- + .
T Consensus 233 ------~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK 306 (832)
T KOG3678|consen 233 ------REPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK 306 (832)
T ss_pred ------cCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh
Confidence 234666777888999999987765544332 344444444566678999999999999999988554332 1 1
Q ss_pred HHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHh
Q 002400 775 EALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQ 810 (927)
Q Consensus 775 ~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~ 810 (927)
.+-+.|+.+.... +...|=.||.|++.+..
T Consensus 307 r~~EWLF~LA~sk------Del~R~~AClAV~vlat 336 (832)
T KOG3678|consen 307 RAAEWLFPLAFSK------DELLRLHACLAVAVLAT 336 (832)
T ss_pred hhhhhhhhhhcch------HHHHHHHHHHHHhhhhh
Confidence 2333333332211 23344456666665543
No 324
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.00 E-value=92 Score=30.46 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHH
Q 002400 33 SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQL 112 (927)
Q Consensus 33 d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l 112 (927)
.+..|+-|.+..++.... +.+ ..++.-+-.+..-+.|..|+.++....... +.+.. ..+-..+
T Consensus 32 ~p~lr~lak~~~~~~~~~--~~~-~~l~~~L~~~~~~E~~~la~~il~~~~~~~----------~~~~~----~~~~~~~ 94 (213)
T PF08713_consen 32 TPDLRKLAKDIYKELKLS--EEL-YELADELWESGYREERYLALLILDKRRKKL----------TEEDL----ELLEKWL 94 (213)
T ss_dssp HHHHHHHHHHHHHHHCTS--HHH-HHHHHHHHCSSCHHHHHHHHHHHHHCGGG------------HHHH----HHHHHCC
T ss_pred cHHHHHHHHHHHhhcccc--hHH-HHHHHHHcCCchHHHHHHHHHHhHHHhhhh----------hHHHH----HHHHHHh
Confidence 455676676666666552 333 234444444667899999998886554322 22211 1122222
Q ss_pred hhcchhhHHHHH-HHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh
Q 002400 113 QNETNKSIIKKI-CDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSK 191 (927)
Q Consensus 113 ~~~~~~~vr~~~-~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~ 191 (927)
..-++..+.-.+ ..+++.+.... +++.+.+.+.+.|+++-.|..|+.++...... ...+.++..+..
T Consensus 95 ~~~~~W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~ 162 (213)
T PF08713_consen 95 PDIDNWATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEA 162 (213)
T ss_dssp CCCCCHHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHH
T ss_pred ccCCcchhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHH
Confidence 222355555555 33444443221 77899999999999999999888777555444 356778888888
Q ss_pred hhCCCCHHHHHHHHHHHHHHH
Q 002400 192 FLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 192 ~l~~~~~~vr~~a~~~l~~l~ 212 (927)
.+.|++..||.+.-.+|..+.
T Consensus 163 ~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 163 LLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp CTTGS-HHHHHHHHHHHHHHC
T ss_pred HcCCchHHHHHHHHHHHHHHH
Confidence 899999999999888888876
No 325
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=73.33 E-value=49 Score=30.57 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhH--HHHHHHHHhccC--CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL--DQVVSMVLNSFQ--DPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
.+.+.+......++.++..+-.+.++.....+ +.+++.+..... .++..+..+++.++..-+.. ..........
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 33444445667788888888888877544332 245555665555 56788899999999876542 3332345667
Q ss_pred HHHHHHHhccCCCCch-HHHHHHHHHH
Q 002400 366 LLPALVGAMDDFQNPR-VQAHAASAVL 391 (927)
Q Consensus 366 il~~ll~~l~~~~~~~-v~~~a~~al~ 391 (927)
.++.|-+.....++.. +|..|.-.|.
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7788888885425555 7777776654
No 326
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=73.09 E-value=99 Score=35.72 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHhHHHHHHHH-ccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCC-
Q 002400 713 AICIFDDVMEHCREAALKYYDTYLPFLLEA-CNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNAL- 790 (927)
Q Consensus 713 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~-l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~- 790 (927)
-+..+...+..+... ...++..+++. ..+.++.++..-...++.++...+ .|+..++..|+..+..+...
T Consensus 56 ~L~~L~~~Vs~Ld~~----~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~----~yl~~vl~~LV~~f~p~~~~~ 127 (563)
T PF05327_consen 56 WLKALSSCVSLLDSS----CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQP----KYLSPVLSMLVKNFIPPPSSI 127 (563)
T ss_dssp HHHHHHHGGGGG-SC----CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-G----GGHHHHHHHHHHGGGS-HHHH
T ss_pred HHHHHHHHHHHhhhH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhccCCCccc
Confidence 344444444444433 33445555444 124466777777777777776654 45666677777666543211
Q ss_pred -------CchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHH-HHHHHHHHHHHhccCCcc
Q 002400 791 -------HSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEA-KVVHAQLCSMVERSDGEI 856 (927)
Q Consensus 791 -------~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~-~~~~~~l~~l~~~~~~~~ 856 (927)
......+.+.+..++.+|+...|.. ...+.|.+.+.+|.+...... ..-++.++.+.+ +-|.+
T Consensus 128 ~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s--~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~-Y~P~L 198 (563)
T PF05327_consen 128 AEWPGCPPEKRREIYERVHDALQKILRLVPTS--PSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTE-YCPEL 198 (563)
T ss_dssp HH---------------HHHHHHHHHHH-GGG--HHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHC-C-GGG
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHcCCC--HHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHc-chHHH
Confidence 1123456677899999999988876 577889999999998665444 344477777774 43544
No 327
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.94 E-value=90 Score=29.87 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=59.2
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA 180 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (927)
..+++...+. +..+|..+.+++..+.+.-+- .=.+.+|.++.+..|+++.+|..|...+..+.+..+..+..
T Consensus 11 ~~Il~~~~~~-~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 11 KNILELCLSS-DDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455655554 899999999999999987553 12368999999999999999999999999999999886654
No 328
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.87 E-value=4.9 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.1
Q ss_pred HHHHHHHHccCCChhHHhhHhHHHHHHH
Q 002400 735 YLPFLLEACNDKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 735 ll~~l~~~l~d~~~~vr~~a~~~lg~l~ 762 (927)
.++.+++.+..+++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6677788888889999999999999875
No 329
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=72.13 E-value=6.5 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHH
Q 002400 183 DTLHEVFSKFLGSNNFDLRIAALEAT 208 (927)
Q Consensus 183 ~~l~~~l~~~l~~~~~~vr~~a~~~l 208 (927)
+.+...+.+.+.|+++.||.+|+..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999998753
No 330
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=71.79 E-value=29 Score=28.14 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=54.1
Q ss_pred chHHHHHHHh-cCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 002400 143 ELIPFIFQCL-VTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATV 209 (927)
Q Consensus 143 ~ll~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~ 209 (927)
+++..+...+ ...+.++|+..+.|+..+....++.+..-.+.++.++.....+++..+...|.+++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4555555553 456789999999999999999998888778889999998888888888777777654
No 331
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=71.69 E-value=1.3e+02 Score=31.00 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHh
Q 002400 302 VLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLST 352 (927)
Q Consensus 302 al~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 352 (927)
|+.-++++.+..|+...-... ..=..++..++++++.||..|+.++..+..
T Consensus 377 Ac~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 377 ACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred eHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 555666666665552211111 122466778899999999999999887654
No 332
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=71.09 E-value=3e+02 Score=35.03 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=52.2
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC
Q 002400 323 QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC 397 (927)
Q Consensus 323 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~ 397 (927)
..+..+++.|+..+-.|-..+|-+|-.++.....+-+.-+-...++.|...+.+ ++..+...++.+|.++...-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence 356677778887777776677777777765543332223344578888888888 88888889999999988654
No 333
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=70.81 E-value=5.7 Score=26.44 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhH
Q 002400 324 VVSMVLNSFQDPHPRVRWAAINAIGQLS 351 (927)
Q Consensus 324 l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 351 (927)
.++.+.+.++++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566777777889999999999999875
No 334
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=70.02 E-value=78 Score=27.95 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=58.4
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCcc-----chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH-HHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWP-----ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE-VLI 179 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~-----~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~-~l~ 179 (927)
+.|+.-+..-++..-+. ++.+.+|..-|..-.|. +.+...+.++..++....+-++-.|-.+|-.-.. .+.
T Consensus 19 q~LV~efq~tt~~eake---qv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKE---QVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHhccHHHHH---HHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 34444443333444444 34555666555545675 4555666777777877777777666666543221 111
Q ss_pred HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 180 AHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
.+. .=+|.++.+++++...+...|+.++..+.
T Consensus 96 ~ea-~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 96 REA-LGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred HHh-cCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 111 12566777888887777777776665554
No 335
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=69.87 E-value=97 Score=28.98 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHH---Hh-------HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHH
Q 002400 157 DKIQESALLILSRMSQFVSEVLI---AH-------GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFL 226 (927)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l~---~~-------~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 226 (927)
...|.-|+.++..+.+..+..+. .| -..+.+.+.+.+.++++.+-..+++.+..++ ..+ +..+.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~-~~~-----~~~Lk 109 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLL-SRF-----RSHLK 109 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHH-----HHHHH
Confidence 45677899999999988877666 21 2566777777777777888888999999888 443 22333
Q ss_pred hhHHHHHHHHHH-HHhcCC--hhHHHHHHHHHHHHHcc
Q 002400 227 DLLPLMMRTLTE-ALNKGN--ESSAQEALELLIELAAT 261 (927)
Q Consensus 227 ~~~p~ll~~l~~-~l~~~~--~~~~~~a~~~l~~l~~~ 261 (927)
.-+..++..+.. .++++. ...+..+++++..+++.
T Consensus 110 ~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 110 LELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 334444444433 344332 24556788999988865
No 336
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.77 E-value=47 Score=35.24 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred HHHHHhhhch-HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHH--HhHhhhchhHHHHhHhhHHHHHHHhccCCCCch
Q 002400 305 ALAQIAEGCS-KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIG--QLSTDLGPELQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 305 al~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
-++.+.+... ..+......+...+..+++++|-.|-+.|+.... .+...+.... ...++-++|.|-+..+..=+..
T Consensus 322 ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~-~~ilPiiFpaLyr~sk~hWN~~ 400 (457)
T KOG2085|consen 322 ELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNA-EVILPIVFPALYRNSKSHWNQA 400 (457)
T ss_pred hHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhcc-ceeeehhhHHHHHHHHHHHHHH
Confidence 3444444332 2344556677778888999999999777765543 2222221111 2334444555544444311334
Q ss_pred HHHHHHHHHHHhHhc
Q 002400 382 VQAHAASAVLNFSEN 396 (927)
Q Consensus 382 v~~~a~~al~~l~~~ 396 (927)
+..-++.++..|++.
T Consensus 401 i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 401 IHNLILNVLKTFMEM 415 (457)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555666666543
No 337
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.60 E-value=1.5e+02 Score=36.15 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=48.2
Q ss_pred cCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 153 VTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 153 ~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
.+-.+..|..++.-|+.-+..+|+.|. -...+.++-=.|.|.+.+||...+++|..+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl--~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~ 354 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFL--SDSYLKYIGWTLSDKNGTVRLRCLKALIKLY 354 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHh--cchHHHHhcceeecCccHHHHHHHHHHHHHH
Confidence 456788999999999999999988753 2345666666788999999999999999998
No 338
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.42 E-value=1.5e+02 Score=30.84 Aligned_cols=300 Identities=17% Similarity=0.149 Sum_probs=151.9
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHh--cCCChHHHHHHHHHHHHhhhhhHHHHHHhHH-HHHHHHHhh
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCL--VTFNDKIQESALLILSRMSQFVSEVLIAHGD-TLHEVFSKF 192 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l--~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~-~l~~~l~~~ 192 (927)
++..+-.+.-.++..+... .|+-.--+-+..++.++ +..+.++...++.++..-|-...-.=+..++ .+++++.+.
T Consensus 119 ~~~~~l~ksL~al~~lt~~-qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~ 197 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHK-QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQV 197 (461)
T ss_pred CchhHHHHHHHHHHHhhcC-CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Confidence 4555555555555444321 12100012233344444 3455667777787777665433221112232 467788877
Q ss_pred hCCC-CHHHHHHHHHHHHHHHHhhCCCch---------hHHhHHhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHcc
Q 002400 193 LGSN-NFDLRIAALEATVNFIMNCLPSLG---------EKERFLDLLPLMMRTLTEALNKG-NESSAQEALELLIELAAT 261 (927)
Q Consensus 193 l~~~-~~~vr~~a~~~l~~l~~~~~~~~~---------~~~~~~~~~p~ll~~l~~~l~~~-~~~~~~~a~~~l~~l~~~ 261 (927)
+... ...+...++.++..+. ++++- ....+.... ++..+...++.. ++++....+..+..++-.
T Consensus 198 l~~~gk~~~VRel~~a~r~l~---~dDDiRV~fg~ah~hAr~ia~e~--~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 198 LNREGKTRTVRELYDAIRALL---TDDDIRVVFGQAHGHARTIAKEG--ILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HcccCccHHHHHHHHHHHHhc---CCCceeeecchhhHHHHHHHHhh--hHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 7654 3345556666766665 21110 011111111 344444444332 455655555555555422
Q ss_pred CcHHHHHHHH-HHHHHHHHHhhccCchhhhhCC-cchhHHHHHHH---HHHHHhhhch--HHH--HhhHHHHHHHHHhcc
Q 002400 262 EPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAA-PEWQKHHAVLI---ALAQIAEGCS--KVM--IKNLDQVVSMVLNSF 332 (927)
Q Consensus 262 ~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~-~~~~~r~aal~---al~~i~~~~~--~~~--~~~l~~l~~~l~~~l 332 (927)
. .+.+...+ .=+..++ +.+.| .+-..|..+-. .|..++-.-. +.+ +.-++.++....+..
T Consensus 273 ~-E~C~~I~e~GGl~tl~----------~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~ 341 (461)
T KOG4199|consen 273 D-EICKSIAESGGLDTLL----------RCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS 341 (461)
T ss_pred H-HHHHHHHHccCHHHHH----------HHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC
Confidence 1 11111100 0122222 22333 33455555444 4444443211 111 123455555555443
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHHHHHhccCCC-CchHHHHHHHHHHHhHhcCCCccccCchHHHH
Q 002400 333 QDPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPALVGAMDDFQ-NPRVQAHAASAVLNFSENCTPDILTPYLDGIV 410 (927)
Q Consensus 333 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~ 410 (927)
.+|.|...++-++..++-..+... ..++ ...-...++.+..+| ...|+..||+.+.+++.... +.-.+++..=+
T Consensus 342 --~~p~Vi~~~~a~i~~l~LR~pdhs-a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~-~~~~~~l~~Gi 417 (461)
T KOG4199|consen 342 --DDPLVIQEVMAIISILCLRSPDHS-AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA-ENRTILLANGI 417 (461)
T ss_pred --CChHHHHHHHHHHHHHHhcCcchH-HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh-hccchHHhccH
Confidence 368888888888888876544332 2222 233344556665433 45799999999999987664 33456777777
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 411 SKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 411 ~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
+.|+......++..+..+-.++..+.
T Consensus 418 E~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 418 EKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 88888777777777777666665554
No 339
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=68.74 E-value=2.2e+02 Score=32.68 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhc-chhhHHHHHHHHHHHHHh----cc---CCCCCccchHHHHHHHhcC--CChHHHHHHHHHHHHhhhh
Q 002400 104 LKSVLLVQLQNE-TNKSIIKKICDAVSELAA----SV---LPDGDWPELIPFIFQCLVT--FNDKIQESALLILSRMSQF 173 (927)
Q Consensus 104 ik~~Ll~~l~~~-~~~~vr~~~~~~i~~ia~----~~---~~~~~w~~ll~~l~~~l~s--~~~~~r~~al~~l~~l~~~ 173 (927)
.-+.+-+.+... .+..++++.|+++..|.. .. ...-.|-+.+..|...+.. ..+.+...++-+...+...
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCv 209 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCV 209 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhc
Confidence 334444555544 456699999988887643 21 1112788877777654321 2244455566666554433
Q ss_pred h-HHHHHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 174 V-SEVLIAHGD-TLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 174 ~-~~~l~~~~~-~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
. .+.|..+.. .++..+..-+.|. ..|..++.++..++
T Consensus 210 S~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 210 SPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLL 248 (552)
T ss_pred CcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHH
Confidence 3 345555666 5666666666665 78888999888866
No 340
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=68.03 E-value=20 Score=29.31 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=44.3
Q ss_pred hHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCC
Q 002400 749 DVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDS 815 (927)
Q Consensus 749 ~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~ 815 (927)
..|.+++.||+.++...+-.+-+|+++++..|....+++. .++..+-.+++.+-+.+.+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~-------~I~~tvk~tl~eFkrtH~D~ 63 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQ-------PIRTTVKKTLSEFKRTHQDT 63 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-S-------SHHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHHHhCccc
Confidence 3577889999999999998899999999999998877542 36666778888888877654
No 341
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=67.84 E-value=1.8e+02 Score=31.27 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=137.4
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCC-CCcc-chHHHHHHHh-c-CCChHHHHHHHHHHHHh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPD-GDWP-ELIPFIFQCL-V-TFNDKIQESALLILSRM 170 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~-~~w~-~ll~~l~~~l-~-s~~~~~r~~al~~l~~l 170 (927)
.+........+..|-..+.+..++.-+..++.|+..+.+..--. .-|. +=...++..+ + ..+.......+.|+-.+
T Consensus 148 ~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL 227 (442)
T KOG2759|consen 148 KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL 227 (442)
T ss_pred cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh
Confidence 35555666677777777777556777777888999988864322 2333 1112222222 1 22334444444444333
Q ss_pred hhhhHHHHHHhH--HHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhH-----HHHHHHHHHHHhc
Q 002400 171 SQFVSEVLIAHG--DTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLL-----PLMMRTLTEALNK 242 (927)
Q Consensus 171 ~~~~~~~l~~~~--~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-----p~ll~~l~~~l~~ 242 (927)
. +.+++..++ -.+++.+...+.+. .+.|-.-.+..+.+++ +...++....... ..+...+..+-+.
T Consensus 228 t--Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll----~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 228 T--FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL----DKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred h--cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 2 111122222 24566666666653 3344444444555555 2332222222221 1122222222222
Q ss_pred C-ChhHHHHHHHHHHHHHccCc---HHHHHHHHHHHHHHHHHhhccCchhhhhCC-cchhHHHHHHHHHHHHhhhchHHH
Q 002400 243 G-NESSAQEALELLIELAATEP---RFLRKQLVDVVGSMLQVAEAEAVFPGFLAA-PEWQKHHAVLIALAQIAEGCSKVM 317 (927)
Q Consensus 243 ~-~~~~~~~a~~~l~~l~~~~~---~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~-~~~~~r~aal~al~~i~~~~~~~~ 317 (927)
. +++.....++++.+..+... ..|..|...+....++.- ..-.+ .=|+.- .. .+
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WS-------P~Hk~e~FW~eN-------------a~-rl 360 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWS-------PVHKSEKFWREN-------------AD-RL 360 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCC-------ccccccchHHHh-------------HH-HH
Confidence 2 33344566666666544321 123334444443322100 00001 114321 11 12
Q ss_pred HhhHHHHHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhHH--HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 318 IKNLDQVVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPELQ--TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 318 ~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
.+.--+++..++..|... +|.+-..||.=+|++.++.+.... .++ ..=..+++.++. ++++||-+|..|+..+.
T Consensus 361 nennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh-~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 361 NENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNH-EDPEVRYHALLAVQKLM 437 (442)
T ss_pred hhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcC-CCchHHHHHHHHHHHHH
Confidence 222335777777777655 488899999999999998754331 122 234557788888 99999999999988775
Q ss_pred h
Q 002400 395 E 395 (927)
Q Consensus 395 ~ 395 (927)
-
T Consensus 438 ~ 438 (442)
T KOG2759|consen 438 V 438 (442)
T ss_pred h
Confidence 3
No 342
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=67.76 E-value=2.9e+02 Score=33.62 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC-CCC-CccchHHHH
Q 002400 71 CRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL-PDG-DWPELIPFI 148 (927)
Q Consensus 71 ~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~-~~~-~w~~ll~~l 148 (927)
--+++...|+|.+++++.-.+.+.. ++..-.....++..+...+.+.+..-+-+++..+...-- -.+ .-...+..|
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgS--e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGS--EILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccc--hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence 4467778889988887321112211 111112223445555555566666655555544322100 000 012256666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 149 FQCLVTFNDKIQESALLILSRMSQFVS---EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 149 ~~~l~s~~~~~r~~al~~l~~l~~~~~---~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
++++.| .|..|++++.+|..+...-. +.+. | ..+.-++.-...+.++++|.+|...++.+.
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~-h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE-H-GGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh-c-CchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 666654 46789999999988775421 1111 1 112222222234558899999999999987
No 343
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=66.85 E-value=4.5 Score=24.27 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHh
Q 002400 339 VRWAAINAIGQLST 352 (927)
Q Consensus 339 vr~~a~~~l~~~~~ 352 (927)
||++|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 79999999999865
No 344
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=66.74 E-value=1.1e+02 Score=28.22 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC---ChhHHH-HHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q 002400 381 RVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG---KQMVQE-GALTALASVADSSQGQFQKYYDAVMPYLKA 456 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~---~~~v~~-~a~~al~~l~~~~~~~~~~~~~~i~~~L~~ 456 (927)
.+-..+..++..++-.+....++|.+-.+++.-...+... ....|. .-+..+..+++..+.-|.||+..+++....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888877778888888888776544332 122233 334677778888888999999999999888
Q ss_pred HHhcccCc--ch----hhHHHHHHHHHHHH
Q 002400 457 ILVNANDK--SN----RMLRAKSMECISLV 480 (927)
Q Consensus 457 ~l~~~~~~--~~----~~lr~~a~~~l~~l 480 (927)
.|+..... +. ..++..++.++...
T Consensus 116 ~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~ 145 (153)
T PF08146_consen 116 LLKQFNSSKTESKSKSWELWRLVLSTLQKC 145 (153)
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHH
Confidence 88764321 12 45665556555544
No 345
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=66.71 E-value=2.3e+02 Score=32.04 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHH
Q 002400 154 TFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMM 233 (927)
Q Consensus 154 s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll 233 (927)
+-++..|..++..++.-+..+|+.+..- ..+...--.|.|.+..||....+.+..++ ...+..+ .+..++..+.
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~yf~k~--~~lry~GW~LSDn~~~vRl~v~Kil~~L~-s~~p~~d---~ir~f~eRFk 359 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDYFRKI--LGLRYNGWSLSDNHEGVRLLVSKILLFLC-SRIPHTD---AIRRFVERFK 359 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHHHHhh--hcccccccccccchHHHHHHHHHHHHHHH-hcCCcch---HHHHHHHHHH
Confidence 4466677777777777777776654221 13444445677888999999999999988 6554332 2333333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 002400 234 RTLTEALNKGNESSAQEALELLIEL 258 (927)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~l~~l 258 (927)
..+......+-.-++..++..+..+
T Consensus 360 ~rILE~~r~D~d~VRi~sik~l~~l 384 (740)
T COG5537 360 DRILEFLRTDSDCVRICSIKSLCYL 384 (740)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHH
Confidence 3333332222222555555555443
No 346
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=66.46 E-value=2.6e+02 Score=32.62 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh
Q 002400 181 HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNC 215 (927)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 215 (927)
....++++|.....++-+.|+..+++.+..++ .+
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL-~~ 334 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLL-TN 334 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHH-hC
Confidence 34557777777777888899999999999888 54
No 347
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=65.83 E-value=3.9e+02 Score=34.65 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=58.2
Q ss_pred CcchhHHHHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPAL 370 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~l 370 (927)
|.+...|...+.-++.+.=+.+ +....+++.+.+.+...|. ++.|.||.+.+.++..+.-.+.|+-...+++.++..+
T Consensus 1498 d~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~EL 1577 (1749)
T KOG3613|consen 1498 DQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYEL 1577 (1749)
T ss_pred hHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHH
Confidence 3457777777777776654443 5677889999999999998 8999999999999998887776643334444444444
Q ss_pred HHh
Q 002400 371 VGA 373 (927)
Q Consensus 371 l~~ 373 (927)
+..
T Consensus 1578 v~v 1580 (1749)
T KOG3613|consen 1578 VQV 1580 (1749)
T ss_pred HHH
Confidence 433
No 348
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=65.57 E-value=47 Score=30.53 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH-HhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHH
Q 002400 467 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLL 545 (927)
Q Consensus 467 ~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 545 (927)
..+-..+++|+-.++..+....|.|....+++.... +................+.+..+...++.-|.||...+++...
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~ 114 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAV 114 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888888899998888887543 2111111122244556778889999999999999999999988
Q ss_pred HHccc
Q 002400 546 QSAQL 550 (927)
Q Consensus 546 ~~l~~ 550 (927)
+.+..
T Consensus 115 ~~L~~ 119 (153)
T PF08146_consen 115 DLLKQ 119 (153)
T ss_pred HHHHH
Confidence 88754
No 349
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=65.42 E-value=1.1e+02 Score=27.75 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHH-HHhh
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEV-FSKF 192 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~-l~~~ 192 (927)
+...--.+|+.|.. .. ..=.+.+..|-..++ +.++.+...|+.+|..+.+.++..|...+ ..++.- +.+.
T Consensus 18 dw~~ileicD~In~--~~----~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~ 91 (141)
T cd03565 18 DWGLNMEICDIINE--TE----DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKL 91 (141)
T ss_pred CHHHHHHHHHHHhC--CC----CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHH
Confidence 55666666776642 11 122467778887777 46888888899999999999988765432 345553 5555
Q ss_pred hCC---CCHHHHHHHHHHHHHHHHhhCCC
Q 002400 193 LGS---NNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 193 l~~---~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
+.. .+..|+...+..+..+. ..|.+
T Consensus 92 i~~~~~~~~~Vk~kil~li~~W~-~~f~~ 119 (141)
T cd03565 92 INPKNNPPTIVQEKVLALIQAWA-DAFRG 119 (141)
T ss_pred HcccCCCcHHHHHHHHHHHHHHH-HHhCC
Confidence 542 35689999999999998 77754
No 350
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=64.89 E-value=1.2e+02 Score=28.01 Aligned_cols=101 Identities=11% Similarity=0.142 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHccCC-h-HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhH-HhHHHHHHHHc
Q 002400 667 QLTDYIIPALVEALHKEP-E-IDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYY-DTYLPFLLEAC 743 (927)
Q Consensus 667 ~~~~~il~~ll~~l~~e~-d-~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l 743 (927)
......+..+.+.++-+. . ..+...++..+...+.....+..+-+.|+.+|..++...+....... +--++.++.++
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 334444444444443221 1 12233445555555544444677888899999999886554332211 24467788888
Q ss_pred cCCChhHHhhHhHHHHHHHhhcCC
Q 002400 744 NDKHPDVRQAAVYGIGVCAEFGGS 767 (927)
Q Consensus 744 ~d~~~~vr~~a~~~lg~l~~~~~~ 767 (927)
.+.++.+..+|...+..+..++++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 889999999999999888888764
No 351
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=64.09 E-value=44 Score=30.16 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 182 GDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
.+.+...+...+.+++++|+..|++|+..+=
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4567888899999999999999999999875
No 352
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.76 E-value=24 Score=34.17 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=44.2
Q ss_pred hhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh
Q 002400 287 FPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354 (927)
Q Consensus 287 i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 354 (927)
+.....+++.-.|++|...+...... ..+.+.+++.+...+.|++..||.+..|+|..++...
T Consensus 110 ~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 110 LEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 33556666644455554444333222 2467888899999999999999999999999998763
No 353
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=63.58 E-value=93 Score=29.10 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHh---h-------HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHh
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIK---N-------LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHH 364 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~---~-------l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 364 (927)
+.+.|.-++..+..+.+..+..+.. + -..+.+.+.+.+..+++.+-..++..+..+...+.... ..-.+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-k~ele 113 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-KLELE 113 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3566777777777777776665541 1 13556777777766678888889999988888776655 44556
Q ss_pred hHHHHHHH-hccCCCC--chHHHHHHHHHHHhHh
Q 002400 365 RLLPALVG-AMDDFQN--PRVQAHAASAVLNFSE 395 (927)
Q Consensus 365 ~il~~ll~-~l~~~~~--~~v~~~a~~al~~l~~ 395 (927)
.+++.++. .+.. ++ ..-|..+..++..++.
T Consensus 114 ~~l~~i~~~il~~-~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 114 VFLSHIILRILES-DNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHcc-CCCcHHHHHHHHHHHHHHHh
Confidence 67777766 4443 33 3566777788887774
No 354
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=63.49 E-value=9.8 Score=23.35 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHh
Q 002400 296 WQKHHAVLIALAQIA 310 (927)
Q Consensus 296 ~~~r~aal~al~~i~ 310 (927)
|.+|+.|..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 779999999999873
No 355
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=63.34 E-value=66 Score=36.63 Aligned_cols=121 Identities=14% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCC-------
Q 002400 632 EVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKD------- 704 (927)
Q Consensus 632 ~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~------- 704 (927)
.||.++.-.++.+.++.... ..+.+-..+.-.+++..--|++..++.+...++.+.+..+.
T Consensus 359 ~IRdss~f~vWs~~r~~S~s------------~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~ 426 (993)
T COG5234 359 SIRDSSCFFVWSFYRCYSKS------------AIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLS 426 (993)
T ss_pred eeecccceeeeeeeeccccc------------cchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchh
Confidence 57888888888887662110 01122222333344444457778888888888888876210
Q ss_pred -------CChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHH-HHHHHccCCChhHHhhHhHHHHHHHhhcC
Q 002400 705 -------KTAEERRIAICIFDDVMEHCREAALKYYDTYLP-FLLEACNDKHPDVRQAAVYGIGVCAEFGG 766 (927)
Q Consensus 705 -------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~-~l~~~l~d~~~~vr~~a~~~lg~l~~~~~ 766 (927)
.+...-..+-+.+.+.+.+.+.. ... .++.. .+++.+..-++.++++.+|++..+++...
T Consensus 427 lIslIN~~sv~r~s~csg~~~r~~~~~~k~-~~C-edVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~~~ 494 (993)
T COG5234 427 LISLINYVSVTRISNCSGDLCRKVAHFPKF-RSC-EDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPK 494 (993)
T ss_pred hhhhccceecchhhhcchHHHHHhcCcccc-chH-HHHHHHHHHhhhhccchhhhhhccccHHHHhcCcc
Confidence 01111122233344444333311 111 12333 37777778889999999999999976543
No 356
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=63.07 E-value=1e+02 Score=26.84 Aligned_cols=74 Identities=12% Similarity=0.243 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC
Q 002400 319 KNLDQVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC 397 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~ 397 (927)
.++..++|.+..++. ...+..|-++...++.++...+= ..+.+..++..+++.... ... ...+..++..+++.-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L--~~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL--SDEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 467889999999998 77899999999999999986432 134555555555555554 222 466777888887655
No 357
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=62.94 E-value=20 Score=27.90 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHH-hhhhhhhhHH--hHHHHHHHHcc-CCChhHHhhHhHHHHHHHhh
Q 002400 709 ERRIAICIFDDVMEH-CREAALKYYD--TYLPFLLEACN-DKHPDVRQAAVYGIGVCAEF 764 (927)
Q Consensus 709 ~r~~a~~~l~~l~~~-~~~~~~~~~~--~ll~~l~~~l~-d~~~~vr~~a~~~lg~l~~~ 764 (927)
..+.|+.++|.+... .|-. +++ .+++.+++... .+...+|..|.|+||.++..
T Consensus 3 ~lKaaLWaighIgss~~G~~---lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQ---LLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHHH---HHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 456788999998774 2333 443 68888887765 67889999999999999875
No 358
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.24 E-value=4.3e+02 Score=33.66 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=92.2
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhch------------
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGP------------ 356 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------------ 356 (927)
.-+.+++-.+|.-|...+|.+.......+....+.+....+..+.|.++.||..+..+...+.-.-+.
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~ 345 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALR 345 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHH
Confidence 44456778899999999998887666655566778888999999999999999998887665432110
Q ss_pred ----------------------hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhc--C----CCccccCchHH
Q 002400 357 ----------------------ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN--C----TPDILTPYLDG 408 (927)
Q Consensus 357 ----------------------~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~--~----~~~~~~~~l~~ 408 (927)
.+...+.+.++..+.+.+.| ..+.||..|..-|..+-+. + +...+.+-...
T Consensus 346 ~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~sw 424 (1266)
T KOG1525|consen 346 ERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSW 424 (1266)
T ss_pred hhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccc
Confidence 11112334467777788888 8999999999988887764 1 12223444455
Q ss_pred HHHHHHHHhcCCChhHH
Q 002400 409 IVSKLLVLLQNGKQMVQ 425 (927)
Q Consensus 409 l~~~L~~~l~~~~~~v~ 425 (927)
+-..++.++...+-..|
T Consensus 425 Ip~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 425 IPDKLLHLYYENDLDDR 441 (1266)
T ss_pred cchhHHhhHhhccccHH
Confidence 55566665554443333
No 359
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=61.29 E-value=1.8e+02 Score=29.14 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhc
Q 002400 777 LSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLSC 828 (927)
Q Consensus 777 l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~~~~~l~~~l~~ 828 (927)
++.|...+.+++ .+.-+|.+|++|++.+...++..- .+-++++.++..
T Consensus 113 ~~~L~~li~~~~----~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPD----ADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 455666677664 367899999999999998876643 344455555554
No 360
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=60.64 E-value=1.8e+02 Score=28.80 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChh---------HHHHHHHH-HHhc---------CCChhHHHHHHHHHH
Q 002400 20 AHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPD---------AFALNLSR-MLSS---------SSLPECRAMSAILLR 80 (927)
Q Consensus 20 ~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~---------~~~~~L~~-il~~---------~~~~~~R~~a~v~Lk 80 (927)
+.+.+.+..+.+| ..|.+|-..|-+-.+..|+ +....|++ ++.- +....-|-.-+..|-
T Consensus 26 dk~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 26 DKAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred cchhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 3466666666544 5677777666554443232 12222332 3221 234556666777777
Q ss_pred hhcccCccccccccccCHhHHHHHHHH----HHHHH----hhcchhhHHHHHHHHHHHHHhccCCC----CCccchHHHH
Q 002400 81 KHLTRDDSTSFIFTRLAPSTQANLKSV----LLVQL----QNETNKSIIKKICDAVSELAASVLPD----GDWPELIPFI 148 (927)
Q Consensus 81 ~~i~~~~~~~~~w~~l~~~~~~~ik~~----Ll~~l----~~~~~~~vr~~~~~~i~~ia~~~~~~----~~w~~ll~~l 148 (927)
+.+..|++ .-+..++.. +-..| .+-+.+..|-..-.+|+.+.+.+-.. -.|.+++|.+
T Consensus 104 QcvASHpd----------Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 104 QCVASHPD----------TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHhcCcc----------hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 77766621 111122221 11122 23357788999999999998865331 1678999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhh-hH-----HHHHH--hHHH-HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 149 FQCLVTFNDKIQESALLILSRMSQF-VS-----EVLIA--HGDT-LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 149 ~~~l~s~~~~~r~~al~~l~~l~~~-~~-----~~l~~--~~~~-l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
+..+.++++..+..|..++..+.-. .+ ..++. ++.. +-.++.+..+.+++.+-..+++|...+. . ++
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-d---np 249 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-D---NP 249 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C---CH
Confidence 9999999998888999999887532 11 11221 2233 3344555556678888888888877776 3 23
Q ss_pred hhHHhHHhhHHH
Q 002400 220 GEKERFLDLLPL 231 (927)
Q Consensus 220 ~~~~~~~~~~p~ 231 (927)
..+..+...+|.
T Consensus 250 rar~aL~~clPd 261 (293)
T KOG3036|consen 250 RARAALRSCLPD 261 (293)
T ss_pred HHHHHHHhhCcc
Confidence 333444444444
No 361
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=60.52 E-value=1.6e+02 Score=28.16 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc
Q 002400 184 TLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEP 263 (927)
Q Consensus 184 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (927)
..++-+++...+++..+|..|++.+..+++..+-++ ...+|.++ .+..++++.++..|...+.++.+..+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lI----AL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLI----ALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhh----hhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 344455556667799999999999999984444332 23445444 34457889999999999999988877
Q ss_pred HHHHHHHHHHHHHHH
Q 002400 264 RFLRKQLVDVVGSML 278 (927)
Q Consensus 264 ~~~~~~l~~ll~~ll 278 (927)
.++...+.+-+....
T Consensus 78 s~v~~~~~~gi~~af 92 (187)
T PF12830_consen 78 SLVESRYSEGIRLAF 92 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777665555444433
No 362
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.34 E-value=98 Score=34.25 Aligned_cols=90 Identities=11% Similarity=0.176 Sum_probs=68.7
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhccCC-CCchHHHHHHHHHHHhHhcCCC
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMDDF-QNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~~~-~~~~v~~~a~~al~~l~~~~~~ 399 (927)
.+.+..|.+.+++.++.|..-|+..|..+.++||..|... --..+++..+...... ....||..+...|...-+.++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 3688889999999999999999999999999999877422 2345777788888774 4678999999999998887764
Q ss_pred ccccCchHHHHHHH
Q 002400 400 DILTPYLDGIVSKL 413 (927)
Q Consensus 400 ~~~~~~l~~l~~~L 413 (927)
. ..|++......
T Consensus 117 ~--~~~~~~~~~~y 128 (470)
T KOG1087|consen 117 P--DGYLPDYYQIY 128 (470)
T ss_pred C--CCcchhHHHHH
Confidence 1 24555544433
No 363
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=60.34 E-value=65 Score=33.88 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=51.8
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH--HHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchh
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD--QVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPE 357 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~--~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~ 357 (927)
..+++.+..+-.-|+..+++++.+|++.+...+. .+...+...+. ..+++|+......+..+++.+..+
T Consensus 52 KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 52 KRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 5666788999999999999999999986543322 34444555555 568999999999998888876544
No 364
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=59.67 E-value=3.2e+02 Score=31.35 Aligned_cols=185 Identities=12% Similarity=0.184 Sum_probs=88.6
Q ss_pred hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC----h---hHHHHHHHHHHH
Q 002400 362 FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK----Q---MVQEGALTALAS 434 (927)
Q Consensus 362 ~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~----~---~v~~~a~~al~~ 434 (927)
....++..++..-.. ++..+|..|.-++..++....+..+.+.+..+.-.++.--+-.+ + ..+..+...++.
T Consensus 279 ~lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~l 357 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGL 357 (661)
T ss_pred HHHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhcc
Confidence 344444444444444 56778888888888887776655444433333222222111000 0 122222222211
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHH-HHHHHHHH----HHH-HhhCcchhhhhHHHHHHHHHHHhcc-C
Q 002400 435 VADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLR-AKSMECIS----LVG-MAVGKDKFRDDAKQVMEVLMSLQGS-Q 507 (927)
Q Consensus 435 l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr-~~a~~~l~----~l~-~~~~~~~~~~~~~~i~~~l~~~~~~-~ 507 (927)
=...+-..---|+.++.-+|.+.+...+.+....+- .+-+.|+- .|+ ...+.....|.+..+++.++....- .
T Consensus 358 d~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLip 437 (661)
T KOG2256|consen 358 DLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIP 437 (661)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcC
Confidence 111111111235666666666666553322211111 12233332 233 2222345666777777766653221 1
Q ss_pred CCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHc
Q 002400 508 MEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSA 548 (927)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l 548 (927)
....-|+|-++++.+..+++..| .|.|.++.++..+-...
T Consensus 438 T~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~~~~ 477 (661)
T KOG2256|consen 438 TPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLKSVT 477 (661)
T ss_pred cccchhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHHHhh
Confidence 12234689999999999988754 46676666665554444
No 365
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=59.45 E-value=2e+02 Score=28.87 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=65.2
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhHHHH---------HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh-
Q 002400 152 LVTFNDKIQESALLILSRMSQFVSEVL---------IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE- 221 (927)
Q Consensus 152 l~s~~~~~r~~al~~l~~l~~~~~~~l---------~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~- 221 (927)
++++++.+.+.++.+...+....-..+ =..+..+-..+.+.+.+.++.||..+++++..++ .....+..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vI-l~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVI-LVQSPGSSD 80 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHH-HHTS---TT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-HhcCCCCCC
Confidence 345566666666666655544322211 1124455566667778889999999999999988 44321100
Q ss_pred ------------------------HHhHHhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHccCcHHHHHHHH
Q 002400 222 ------------------------KERFLDLLPLMMRTLTEALNKG--NESSAQEALELLIELAATEPRFLRKQLV 271 (927)
Q Consensus 222 ------------------------~~~~~~~~p~ll~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 271 (927)
...+..--..+++.+...+.++ +......+++.|..++...|.++...++
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~ 156 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILP 156 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 0111111223444444444433 3455666778888888887777544333
No 366
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=57.41 E-value=1.3e+02 Score=25.99 Aligned_cols=74 Identities=16% Similarity=0.023 Sum_probs=53.1
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHH--HHHHHHHh----hhC--CCCHHHHHHHHHHHHH
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGD--TLHEVFSK----FLG--SNNFDLRIAALEATVN 210 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~--~l~~~l~~----~l~--~~~~~vr~~a~~~l~~ 210 (927)
....+.+..|...+++.++.+..-++.+|..++...++.+..++. .++.-+.+ ... +.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 456788889999999999999999999999999998887665432 12222211 111 2378899998888776
Q ss_pred HH
Q 002400 211 FI 212 (927)
Q Consensus 211 l~ 212 (927)
+.
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 54
No 367
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=55.84 E-value=2.3e+02 Score=28.45 Aligned_cols=123 Identities=18% Similarity=0.270 Sum_probs=75.5
Q ss_pred cCCCCHHHHHHHHHHHHHhHhh----h-chhHHH---HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc---
Q 002400 332 FQDPHPRVRWAAINAIGQLSTD----L-GPELQT---QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD--- 400 (927)
Q Consensus 332 l~d~~~~vr~~a~~~l~~~~~~----~-~~~~~~---~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~--- 400 (927)
++|+++.|...+..|.+.+... + ...... ..+..+=..++..+++ .++.||..+.+.+..++-.....
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~-~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDS-ENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGS-SSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 6788888888887777765543 2 111111 2234444556777777 78999999999999887432110
Q ss_pred --------------ccc---Cc---------hHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHH
Q 002400 401 --------------ILT---PY---------LDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQGQFQKYYDAVMP 452 (927)
Q Consensus 401 --------------~~~---~~---------l~~l~~~L~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~ 452 (927)
.+. |+ -..+++.|+..+.... ..+-..++.+++.+++.-+ .|++.+++
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~ 156 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILP 156 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHH
Confidence 010 11 3458888888887765 5555666677777765443 36778888
Q ss_pred HHHHHHh
Q 002400 453 YLKAILV 459 (927)
Q Consensus 453 ~L~~~l~ 459 (927)
.|...-.
T Consensus 157 ~ll~~~~ 163 (239)
T PF11935_consen 157 ALLSFNP 163 (239)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 8877644
No 368
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=54.44 E-value=3.8e+02 Score=30.68 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhchh-HHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhc
Q 002400 319 KNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLGPE-LQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 319 ~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~ 396 (927)
..+.+++-.+...+ .++...++-+.+..++.+++.+-++ .+.+..+.+....-..|.| +++-+...|..+++.|++.
T Consensus 475 ~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d-~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 475 QLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLAD-RHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcc
Confidence 44556665555555 3444458999999999998866443 3223444444444445677 9999999999999999988
Q ss_pred CCCc
Q 002400 397 CTPD 400 (927)
Q Consensus 397 ~~~~ 400 (927)
...+
T Consensus 554 T~~e 557 (559)
T PF14868_consen 554 TSHE 557 (559)
T ss_pred CCcc
Confidence 6543
No 369
>PLN03205 ATR interacting protein; Provisional
Probab=54.20 E-value=1.6e+02 Score=31.15 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH---HHH----HhHHHHHHHHHhhh-
Q 002400 122 KKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE---VLI----AHGDTLHEVFSKFL- 193 (927)
Q Consensus 122 ~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~---~l~----~~~~~l~~~l~~~l- 193 (927)
.++.++.+.+.+..+..-....++..|+.++.-++..+...++..|..+.+++-. .|. .+.-.++.+..+..
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 4555666666555443235567899999998888888889999999998887542 222 24455566555543
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHc
Q 002400 194 GSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNK-GNESSAQEALELLIELAA 260 (927)
Q Consensus 194 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 260 (927)
......||..|+.....++ ..-+...+++.|.. ..+++.+.+++.. ..-.+.++++..+.-+..
T Consensus 382 ~~TEE~VrLEAvSIMnVIl-mssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIV-MSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred ccchhheeeehhhhhHHhh-hccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 3447789999998888777 32211123444432 1344455554432 234566778877765553
No 370
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=53.23 E-value=3.2e+02 Score=29.37 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred HHHHHHHHHhHhhhc---hhHHHHhHhhHHHHHHHhccCC-CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHH
Q 002400 341 WAAINAIGQLSTDLG---PELQTQFHHRLLPALVGAMDDF-QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVL 416 (927)
Q Consensus 341 ~~a~~~l~~~~~~~~---~~~~~~~~~~il~~ll~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 416 (927)
..+++.+-.+.+... ..........++|.+++++--. +.+.+|..+...+..+++.+....-...-..+-+.+...
T Consensus 229 ~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsf 308 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSF 308 (373)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHH
Confidence 445666666666531 1222356778889998876421 478899999999999998876221111122333333333
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc
Q 002400 417 LQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 417 l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 460 (927)
.++.-..--...+..+..+|...++ ....++|.+.+.+.+
T Consensus 309 vqk~l~~~t~~~f~~l~~vA~l~p~----lV~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 309 VQKYLAHYTYQYFQFLEKVAELDPQ----LVISLIPTIRQSLKD 348 (373)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHH
Confidence 3333222334456666666655443 344455555555443
No 371
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=52.82 E-value=1.1e+02 Score=29.35 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc--hHHHHHHHHHHHhHhcC
Q 002400 320 NLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP--RVQAHAASAVLNFSENC 397 (927)
Q Consensus 320 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~--~v~~~a~~al~~l~~~~ 397 (927)
...+++..+++...+.-.+||..|..++.++...-.+.+ ++++ -.+.+...+.. +.. .....+..++..++.-.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHh
Confidence 345566666666666678999999999999984332211 1222 23444444443 211 11223334445555444
Q ss_pred CCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 398 TPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 398 ~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
. +..|...++..++......+..+...+..++-....
T Consensus 80 ~---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 80 D---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred c---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 3 235777888888877777777776666666666554
No 372
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.62 E-value=34 Score=34.86 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=50.1
Q ss_pred chHHHHHHHhcCCChH-HHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 143 ELIPFIFQCLVTFNDK-IQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~-~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+++..|...+++.+++ ....|+.-++.+.+..|+...-.. -..-..++..+++++++||..|++++..++
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3566677777777665 445577777777777766422111 234567888999999999999999999887
No 373
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=50.03 E-value=2.9e+02 Score=27.89 Aligned_cols=103 Identities=8% Similarity=0.120 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch------hHHhHHhh
Q 002400 157 DKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG------EKERFLDL 228 (927)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~------~~~~~~~~ 228 (927)
+..|-.++.+++.+.+.-......++ .+++|.+++.+..++.-.+..|...+..++ .. +.+ ..+.|..+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL-~d--d~GL~yiC~t~eRf~av 186 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL-LD--DVGLNYICQTAERFFAV 186 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH-HS--HHHHHHHTSSHHHHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH-cc--hhHHHHHhcCHHHHHHH
Confidence 46789999999999876554444433 478999999999888888998998888877 21 000 12334443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC
Q 002400 229 LPLMMRTLTEALNKGNESSAQEALELLIELAATE 262 (927)
Q Consensus 229 ~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (927)
...+-+.+.++...+.....+..+.+...+++++
T Consensus 187 ~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 187 AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 3333334444455667777777777777777653
No 374
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=48.46 E-value=3.7e+02 Score=28.72 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=40.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 146 PFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 146 ~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
..++....... ..++.|...+......+|+. ...-+..-+.+..|.+..||..|++-|-.|+
T Consensus 28 ~~il~~~k~~~-k~k~lasq~ip~~fk~fp~l----a~~a~da~~d~~ed~d~~ir~qaik~lp~fc 89 (460)
T KOG2213|consen 28 EGILKAVKGTS-KEKRLASQFIPRFFKHFPSL----ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFC 89 (460)
T ss_pred HHHHHHhhcch-HHHHHHHHHHHHHHhhCchh----hhHHHHhhhccccccchhhHHHHHhccchhc
Confidence 33444443333 34556667777666666552 3344555566778889999999999998888
No 375
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=47.79 E-value=4.5e+02 Score=29.48 Aligned_cols=84 Identities=12% Similarity=0.228 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCch
Q 002400 302 VLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 302 al~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
-+..++.+.+..++.+.++++.+++.+.+ .+|.-+.. +..+-.+...-. .+.++..+|.|...+.|.....
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q----~~p~~~~l-l~~l~~LI~Qk~----~evL~~ciP~L~g~l~ds~~~~ 252 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQ----LEPEQYHL-LRLLHVLIKQKQ----LEVLQKCIPFLIGHLKDSTHND 252 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcC----CCHHHHHH-HHHHHHHHHhcc----HHHHHHHHHHHHHHhccccchh
Confidence 45567777777777777887777665543 44443333 333333322111 3567788888888888744556
Q ss_pred HHHHHHHHHHHhH
Q 002400 382 VQAHAASAVLNFS 394 (927)
Q Consensus 382 v~~~a~~al~~l~ 394 (927)
.+...|.-+.++.
T Consensus 253 i~~~Ilk~ia~~~ 265 (851)
T KOG3723|consen 253 IILNILKEIAVYE 265 (851)
T ss_pred HHHHHHHHHHhcC
Confidence 6666666555543
No 376
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=47.41 E-value=76 Score=28.48 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc--ccCc
Q 002400 328 VLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI--LTPY 405 (927)
Q Consensus 328 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~--~~~~ 405 (927)
+++.|+-....++.+|..++.. . ...+.+.+.+++.+.+ ++-..|....+.+..+++.+.... -.+|
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~--------~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--R--------DMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--c--------ccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 4445555555666776666654 1 3445778888999998 788899999999999998765443 3456
Q ss_pred hHHHHHHHHHH
Q 002400 406 LDGIVSKLLVL 416 (927)
Q Consensus 406 l~~l~~~L~~~ 416 (927)
...+-.-|...
T Consensus 82 v~~l~~dL~~I 92 (139)
T PF12243_consen 82 VSMLQRDLPRI 92 (139)
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 377
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=47.39 E-value=4.5e+02 Score=29.42 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=73.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC-c
Q 002400 323 QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP-D 400 (927)
Q Consensus 323 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~-~ 400 (927)
.+++.+.+.+...+...|..+.|.+..+.-.+..+.+-+++ ..-+..++...+| +...|+......|.+|.-.... +
T Consensus 473 ~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knE 551 (743)
T COG5369 473 SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNE 551 (743)
T ss_pred hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhccccccccc
Confidence 46666666666667788999999999888777665433333 3447778899999 9999999999999999753332 1
Q ss_pred cccC----c--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 401 ILTP----Y--LDGIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 401 ~~~~----~--l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
.... . ..-+...|...+...++-.-+..+-.+..++.
T Consensus 552 kskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa 594 (743)
T COG5369 552 KSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAA 594 (743)
T ss_pred ccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHh
Confidence 1111 1 12356666666666665433333444444443
No 378
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.98 E-value=6.5e+02 Score=31.14 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhc
Q 002400 702 GKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFG 765 (927)
Q Consensus 702 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~ 765 (927)
-.|..+.+|..++.-||.-+...|..+.. ...+..+-..|+|.+..||..+..+|-.+.++.
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~ 357 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD 357 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhcc
Confidence 55778999999999999999999987633 356667778899999999999999999999883
No 379
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=45.89 E-value=3.4e+02 Score=27.54 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=88.5
Q ss_pred chhHHHHHHHHHHHHhhhchH--------HHHhhHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhc----hhHHHH
Q 002400 295 EWQKHHAVLIALAQIAEGCSK--------VMIKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLG----PELQTQ 361 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~--------~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~ 361 (927)
.|+.-+.+...|+.+++.++- .-.+.+..+-..++..| +-.|.-+-.++..++..+++.+. ++. ..
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l-~~ 138 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPEL-SE 138 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchH-HH
Confidence 388777777888888754321 11233444555444433 33455556666677777776654 332 23
Q ss_pred hHhhHHHHHHHhccCCC-Cc---hHHHHHH--HHHHHhHhcCCCccccCchHHHHHHHHHHhcCCCh--------hHHHH
Q 002400 362 FHHRLLPALVGAMDDFQ-NP---RVQAHAA--SAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQ--------MVQEG 427 (927)
Q Consensus 362 ~~~~il~~ll~~l~~~~-~~---~v~~~a~--~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~--------~v~~~ 427 (927)
.-...+..++..+.+ . .. ..|..|- .++..++..-+... .+.+...+..|+...+.+.. ..|-+
T Consensus 139 LP~~WL~~~l~~i~~-~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~-~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVH 216 (255)
T PF10350_consen 139 LPEEWLDELLEAIES-KGQQKLSITRRSAGLPFLILAILSAEPSNS-RPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVH 216 (255)
T ss_pred hHHHHHHHHHHHHhc-ccccccccccccCcHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHhcCCcccccccccchHHHH
Confidence 444556666666666 3 22 4565554 44555554443321 26788889999888776543 46778
Q ss_pred HHHHHHHHHHHh--hhhhHHhHHHHH
Q 002400 428 ALTALASVADSS--QGQFQKYYDAVM 451 (927)
Q Consensus 428 a~~al~~l~~~~--~~~~~~~~~~i~ 451 (927)
|+.++..+.... +....+|+...+
T Consensus 217 AlNiLr~if~ds~L~~~~~~yi~~~l 242 (255)
T PF10350_consen 217 ALNILRAIFRDSKLSEDVSPYIEDAL 242 (255)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 888888877433 234455555443
No 380
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=45.25 E-value=1.5e+02 Score=27.89 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccC
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA 97 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~ 97 (927)
+..+..+|.+..-.|.+..+++...+..+..-+|.. -++.+.. -.++.+|++|.-.|++ ++
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~----aLeLL~~~f~d~~VR~yAV~~L~~--------------~s 99 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ----ALELLDCNFPDEHVREFAVRCLEK--------------LS 99 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHCCCcCCCHHHHHHHHHHHHh--------------CC
Confidence 566777777776677778888888888876654442 2444443 4568888888877653 34
Q ss_pred HhHHHHHHHHHHHHHhhc
Q 002400 98 PSTQANLKSVLLVQLQNE 115 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~ 115 (927)
++.....-.+|+++|+.|
T Consensus 100 d~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 100 DDELLQYLLQLVQVLKYE 117 (171)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 555566667777788776
No 381
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=42.93 E-value=65 Score=27.08 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHH--hHHHHHHHHcc--CCChhHHhhHhHHHHHHHhhcC
Q 002400 710 RRIAICIFDDVMEHCREAALKYYD--TYLPFLLEACN--DKHPDVRQAAVYGIGVCAEFGG 766 (927)
Q Consensus 710 r~~a~~~l~~l~~~~~~~~~~~~~--~ll~~l~~~l~--d~~~~vr~~a~~~lg~l~~~~~ 766 (927)
|...+.++|.++-..+.. ...+. .-+|.++.+.. +.+|.+|+.|.+|+-.++....
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 555677777777655432 22222 34788887754 6899999999999999987654
No 382
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=41.41 E-value=1.9e+02 Score=26.61 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccC
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA 97 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~ 97 (927)
+..+-.+|..+.-.|.+.++++.+.+..+..-+|. ..++.+.. -.++.+|++|.-.|++ .+
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~----~aL~LL~~~~~~~~vr~yAv~~L~~--------------~~ 99 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPE----DALELLSPKYPDPVVRQYAVRVLES--------------AS 99 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHH----HHHHHcCCcCCCHHHHHHHHHHHHh--------------CC
Confidence 45566666666666777777777777776553443 23344433 3458888888766643 34
Q ss_pred HhHHHHHHHHHHHHHhhc
Q 002400 98 PSTQANLKSVLLVQLQNE 115 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~ 115 (927)
.+.....-.+|+++|..|
T Consensus 100 ~~~l~~ylpQLVQaLkye 117 (152)
T cd00864 100 DDELLLYLPQLVQALKYE 117 (152)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 445555666677777665
No 383
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=41.32 E-value=4.8e+02 Score=27.98 Aligned_cols=154 Identities=11% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCC-c---chhHHHHHHHHH
Q 002400 232 MMRTLTEALN-KGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAA-P---EWQKHHAVLIAL 306 (927)
Q Consensus 232 ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~-~---~~~~r~aal~al 306 (927)
+++.+.++++ ..||++....+.-+.....+..=+....+..+...+.+...|+......... . .-....+.+.+|
T Consensus 142 ~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~L 221 (356)
T PF03542_consen 142 WFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVL 221 (356)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 3344444443 3466666555554444443322111122444444444444332111111111 1 123344455666
Q ss_pred HHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCC-CCchHHHH
Q 002400 307 AQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDF-QNPRVQAH 385 (927)
Q Consensus 307 ~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~-~~~~v~~~ 385 (927)
..+...-...-+..-++++..+..++.+. .-..+..++...+-.++..+ . ..+|.++..+... ..+.+...
T Consensus 222 s~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~-~----k~L~~iL~kLs~i~tt~~~Ai~ 293 (356)
T PF03542_consen 222 SALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSM-K----KLLPSILLKLSKISTTPNMAIH 293 (356)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHH-H----HHHHHHHHHHHhhccchhhHHH
Confidence 66665433322344567888888888762 22334555555444443322 3 3444444444430 12334444
Q ss_pred HHHHHHHh
Q 002400 386 AASAVLNF 393 (927)
Q Consensus 386 a~~al~~l 393 (927)
....|..+
T Consensus 294 ILEFLs~L 301 (356)
T PF03542_consen 294 ILEFLSSL 301 (356)
T ss_pred HHHHHHHH
Confidence 44444443
No 384
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=41.13 E-value=2e+02 Score=26.76 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhccCCCCCc-----cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHH
Q 002400 123 KICDAVSELAASVLPDGDW-----PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVL 178 (927)
Q Consensus 123 ~~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l 178 (927)
.+++++..+....-+ +.| .+++|.+..+++|..+.....|+..+..+...+++.+
T Consensus 45 vlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677766633333 456 5899999999999999999999999999998887754
No 385
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=40.39 E-value=2.5e+02 Score=24.43 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=49.6
Q ss_pred hHHhHHHHHHHHcc-CCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHH
Q 002400 731 YYDTYLPFLLEACN-DKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 731 ~~~~ll~~l~~~l~-d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 809 (927)
+++.++|.+.+.+. ...++.|-++---++.++...+ --.+.+..+++.+....... .....+..|+..+.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~--------~~~~~~l~~L~~l~ 73 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQE--------TVQRQALICLIVLC 73 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccc--------hhHHHHHHHHHHHH
Confidence 67889999999999 7788998888888888887755 12334444455544333221 12346788888888
Q ss_pred hhc
Q 002400 810 QFH 812 (927)
Q Consensus 810 ~~~ 812 (927)
...
T Consensus 74 q~q 76 (121)
T PF12397_consen 74 QSQ 76 (121)
T ss_pred Hcc
Confidence 655
No 386
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=40.27 E-value=2.4e+02 Score=24.20 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHH
Q 002400 335 PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLL 414 (927)
Q Consensus 335 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 414 (927)
..+.+...+.|++... .+...++..+.+.+.. ..+.-+-.+.+.+..++.+++...-..+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~----------~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENR----------KHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4455555555555432 3556777777777777 6677788899999999998864322112222244444
Q ss_pred HHhcCCChhHHHH
Q 002400 415 VLLQNGKQMVQEG 427 (927)
Q Consensus 415 ~~l~~~~~~v~~~ 427 (927)
......++.+|..
T Consensus 86 ~~~~~~~~~~r~k 98 (114)
T cd03562 86 DAYEKVDEKTRKK 98 (114)
T ss_pred HHHHhCCHHHHHH
Confidence 4444445555543
No 387
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.12 E-value=6.4e+02 Score=29.14 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHH---HHHHHhhcchhhHHHHHHHHHHHHH
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSV---LLVQLQNETNKSIIKKICDAVSELA 132 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~---Ll~~l~~~~~~~vr~~~~~~i~~ia 132 (927)
+..+++-++ +++++....|.-.||..+....+ .....+... ..+|.. |-..-.+-.++..++.+|++|+.++
T Consensus 50 LellVervq-dpd~~Lq~~aLe~lr~~irsStS---SmtsvpkPl-KFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 50 LELLVERVQ-DPDPDLQKAALESLREEIRSSTS---SMTSVPKPL-KFLRPHYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHHHHhccc---ccccCCchh-hhhccchhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 355666654 67777777787888887765410 001111111 122221 2222233346788999999999998
Q ss_pred hccCC
Q 002400 133 ASVLP 137 (927)
Q Consensus 133 ~~~~~ 137 (927)
.....
T Consensus 125 mt~se 129 (878)
T KOG2005|consen 125 MTMSE 129 (878)
T ss_pred eeecc
Confidence 76543
No 388
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=38.59 E-value=3.4e+02 Score=25.49 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=48.2
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
|..+|.++..+.-.++.....+...+..-...- ....++++..... ++.||..|++++..+-
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~-------~~~aLeLL~~~f~--d~~VR~yAV~~L~~~s--------- 99 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLK-------PEQALELLDCNFP--DEHVREFAVRCLEKLS--------- 99 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCC-------HHHHHHHCCCcCC--CHHHHHHHHHHHHhCC---------
Confidence 677787777776666555555555554332211 1223444433332 5889999998887754
Q ss_pred HHhHHhhHHHHHHHHHH
Q 002400 222 KERFLDLLPLMMRTLTE 238 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~ 238 (927)
...+..++|.+++.+..
T Consensus 100 d~eL~~yL~QLVQaLKy 116 (171)
T cd00872 100 DDELLQYLLQLVQVLKY 116 (171)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 14567788888888764
No 389
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=38.46 E-value=3e+02 Score=24.79 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=53.0
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh---hH
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ---FQ 444 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~---~~ 444 (927)
..+++.|+. ....++.+|..||.. .. .-+.+++.++.-+++.+-..|...+..|..++..+... ..
T Consensus 11 ~~~L~~L~a-S~qSi~kaa~fAlk~--~~--------~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~ 79 (139)
T PF12243_consen 11 TQLLRRLNA-SQQSIQKAAQFALKN--RD--------MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNY 79 (139)
T ss_pred HHHHHHcch-hHHHHHHHHHHHHHc--cc--------cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccc
Confidence 344556665 556777888888765 22 23567788888888888888999988888887666542 35
Q ss_pred HhHHHHHHHHHHHH
Q 002400 445 KYYDAVMPYLKAIL 458 (927)
Q Consensus 445 ~~~~~i~~~L~~~l 458 (927)
+|...+-.-|..++
T Consensus 80 ~Yv~~l~~dL~~Iv 93 (139)
T PF12243_consen 80 PYVSMLQRDLPRIV 93 (139)
T ss_pred hhHHHHHHHHHHHH
Confidence 66665544444443
No 390
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=38.30 E-value=2.7e+02 Score=25.79 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC
Q 002400 164 LLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG 243 (927)
Q Consensus 164 l~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~ 243 (927)
..+|..++...+-.+..+...+-..+- .+..-+.++...-++++..++ .. -..+-..++-.+.+.+-+.
T Consensus 76 idlL~~lv~~~p~~vle~~~~l~~~ld-~l~~lp~~~a~~ll~Al~PLi-~~---------s~~lrd~lilvLRKamf~r 144 (158)
T PF14676_consen 76 IDLLSELVRKAPLTVLECSSKLKELLD-YLSFLPGDVAIGLLRALLPLI-KF---------SPSLRDSLILVLRKAMFSR 144 (158)
T ss_dssp HHHHHHHHHH-HHHHS-S-HHHHGGGG-GTTTS-HHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHH-hc---------CHHHHHHHHHHHHHHHccc
Confidence 466666666666555555554443332 223324455555555555555 11 1233444555555555555
Q ss_pred ChhHHHHHHHH
Q 002400 244 NESSAQEALEL 254 (927)
Q Consensus 244 ~~~~~~~a~~~ 254 (927)
+.+.+..|...
T Consensus 145 ~~~~R~~Av~G 155 (158)
T PF14676_consen 145 ELDARQMAVNG 155 (158)
T ss_dssp SHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 55555555543
No 391
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=38.29 E-value=2.2e+02 Score=26.64 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccC
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA 97 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~ 97 (927)
+..+..+|.+..=.|.+..+++.+.|..+..-.|. .-+++|.. -.++.+|++|.-.|++ ++
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~----~aLeLL~~~f~~~~VR~yAV~~L~~--------------~s 106 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIE----DALELLSPYFTNPVVRKYAVSRLKL--------------AS 106 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHH----HHHHHcCccCCCHHHHHHHHHHHHh--------------CC
Confidence 44455555554444556666777777776553333 22344433 3467777777766653 33
Q ss_pred HhHHHHHHHHHHHHHhhc
Q 002400 98 PSTQANLKSVLLVQLQNE 115 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~ 115 (927)
++.....-.+|+++|+.|
T Consensus 107 d~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 107 DEELLLYLLQLVQALKYE 124 (166)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444455556667777766
No 392
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=36.78 E-value=8.3e+02 Score=29.44 Aligned_cols=144 Identities=14% Similarity=0.188 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH----hhhhhHH-hHHHHHHHH
Q 002400 380 PRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS----SQGQFQK-YYDAVMPYL 454 (927)
Q Consensus 380 ~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~----~~~~~~~-~~~~i~~~L 454 (927)
+.+|..--..+..+....+.. + .+.+++.+..++-++++..|.-|...+..+... ..++|.. +.+.+...+
T Consensus 96 ~~l~~~F~~~f~~~~~~~~~~-~---~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l 171 (727)
T PF12726_consen 96 EELRELFDAIFSSLQSKKPLK-L---PKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHL 171 (727)
T ss_pred HHHHHHHHHHHHHHhccCCcc-c---cccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHH
Confidence 345555445555555443311 1 134445555555577889999898888887653 3345543 444455555
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHH-----HHHHHHHHhccCCCCC-CcchHHHHHHHHHHHHH
Q 002400 455 KAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ-----VMEVLMSLQGSQMEAD-DPTTSYMLQAWARLCKC 528 (927)
Q Consensus 455 ~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~-----i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 528 (927)
..+ .. .. .....-.+-=..+..+...+.++.+..++.. ++..+++- +..+ ++....+++++..+.+.
T Consensus 172 ~~i-~~-~~-~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~h----L~~~~~~~l~~lL~~l~~lL~k 244 (727)
T PF12726_consen 172 YRI-SP-NN-YNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNH----LSSNLSPPLPILLRCLSILLEK 244 (727)
T ss_pred HHh-cc-CC-CChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHH----hhcccchhHHHHHHHHHHHHHh
Confidence 554 21 11 1111111223456666677776766666655 44444442 2222 55668889999999999
Q ss_pred hccccc
Q 002400 529 LGQEFI 534 (927)
Q Consensus 529 ~~~~~~ 534 (927)
+|.+|=
T Consensus 245 ~~~~FW 250 (727)
T PF12726_consen 245 LGSDFW 250 (727)
T ss_pred CHHHHh
Confidence 998763
No 393
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=36.74 E-value=2.4e+02 Score=26.88 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHH
Q 002400 20 AHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILL 79 (927)
Q Consensus 20 ~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~L 79 (927)
..+..+|.+..=.+....+++.+.+..+..-.|. ..++.+.. -.++.+|++|.-.|
T Consensus 44 ~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~----~aL~LL~~~~~~~~Vr~yAV~~L 100 (184)
T smart00145 44 KALPKFLLSVNWSDADEVAQALSLLKKWAPLDPE----DALELLSPKFPDPFVRAYAVERL 100 (184)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHH----HHHHHhCccCCCHHHHHHHHHHH
Confidence 3333334333333444455555555555443332 12222222 23555666555444
No 394
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.36 E-value=3.5e+02 Score=25.01 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=62.8
Q ss_pred HHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCC--CCCccchHHHHHHH
Q 002400 74 MSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLP--DGDWPELIPFIFQC 151 (927)
Q Consensus 74 ~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~--~~~w~~ll~~l~~~ 151 (927)
++..+|.+.++.+ +..+.+|-+.+++.+....+. ......++++.+.+...- .+.|. -+..++..
T Consensus 37 LG~~IL~~~fk~h-----------~~~r~~Ile~l~~rI~~~s~~-~~~~~idlL~~lv~~~p~~vle~~~-~l~~~ld~ 103 (158)
T PF14676_consen 37 LGIQILLELFKVH-----------EMIRSEILEQLLNRIVTKSSS-PSSQYIDLLSELVRKAPLTVLECSS-KLKELLDY 103 (158)
T ss_dssp HHHHHHHHHHHH------------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-H-HHHGGGGG
T ss_pred HHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHChHHHHHHHH-HHHHHHHH
Confidence 7888888888766 334566667777776665232 223456777777664211 01222 22233333
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 002400 152 LVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATV 209 (927)
Q Consensus 152 l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~ 209 (927)
+..-..+.-..-+.++.-++..-++ .-+.++-.+.+.+-+.+.+.|..|+..+.
T Consensus 104 l~~lp~~~a~~ll~Al~PLi~~s~~----lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 104 LSFLPGDVAIGLLRALLPLIKFSPS----LRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp TTTS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 3333333333333444333332222 24567888888888889999999887653
No 395
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=36.18 E-value=2.1e+02 Score=24.77 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=39.1
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 328 VLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 328 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
.+..|......++..+.|++... .+...++..+.+.+.. ..+.-+-...+.+..++.++.
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~----------~~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~ 64 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHA----------SHAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSK 64 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHh
Confidence 34455556677777777777643 2334567777777766 445566677788888887765
No 396
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=35.91 E-value=2.8e+02 Score=23.75 Aligned_cols=55 Identities=11% Similarity=0.355 Sum_probs=38.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhhhhhHHhH-HHHHHHHccCCChhHHhhHhHHHHH
Q 002400 706 TAEERRIAICIFDDVMEHCREAALKYYDTY-LPFLLEACNDKHPDVRQAAVYGIGV 760 (927)
Q Consensus 706 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~l-l~~l~~~l~d~~~~vr~~a~~~lg~ 760 (927)
.+..|..+++.+.++++.++.....++... .+.+.......++.+|...-..++.
T Consensus 50 ~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~i 105 (114)
T cd03562 50 PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNI 105 (114)
T ss_pred CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367888999999999999987766655544 4555555566677777665554443
No 397
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=35.91 E-value=2.1e+02 Score=22.19 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhC-ChhhHHHHHhcCCHHHHHHHHHhh
Q 002400 866 KIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSL-PPSTLASTWSSLQPQQQLALQSIL 925 (927)
Q Consensus 866 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~ 925 (927)
.....+..++... ..+.++|.....+|+...... ... ....|..+|++.|..++..+
T Consensus 14 ~~~~~l~~il~~~--~~~~~~R~~A~i~LKn~I~~~W~~~-~~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 14 GFWQYLLQILSSN--SQDPEVRQLAAILLKNLIKKNWSPS-KQKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp CHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHSGGHH-HHHHHHGSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHcCchh-hccCCCCCCHHHHHHHHHHH
Confidence 4445555555322 457889999999999876654 322 25777899999999988643
No 398
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=6.9e+02 Score=28.05 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCH--hHHHHHHHH---HHHHHhhcchhhHHHHHHHHHHH
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAP--STQANLKSV---LLVQLQNETNKSIIKKICDAVSE 130 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~--~~~~~ik~~---Ll~~l~~~~~~~vr~~~~~~i~~ 130 (927)
+..|++-++ +.+++..-.+...||..++.. -++++. .-...+|.. +++.-.+...+.-++.+|++++.
T Consensus 49 LellVeriq-d~d~~l~~~sLn~LkeviksS------tSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~ 121 (881)
T COG5110 49 LELLVERIQ-DPDIDLQNNSLNMLKEVIKSS------TSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSA 121 (881)
T ss_pred HHHHHHHhh-CCChHHHHHHHHHHHHHHhcc------ccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHH
Confidence 456777765 677888888888999888765 122111 112334444 44445555677888999999999
Q ss_pred HHhccCC
Q 002400 131 LAASVLP 137 (927)
Q Consensus 131 ia~~~~~ 137 (927)
++..+..
T Consensus 122 l~m~yse 128 (881)
T COG5110 122 LCMVYSE 128 (881)
T ss_pred Heeeccc
Confidence 9876554
No 399
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.20 E-value=1.2e+03 Score=30.40 Aligned_cols=166 Identities=11% Similarity=0.031 Sum_probs=107.3
Q ss_pred HHhHHHHHHHH-ccCCChhHHhhHhHHHHHHHhhcCC-CcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHH
Q 002400 732 YDTYLPFLLEA-CNDKHPDVRQAAVYGIGVCAEFGGS-VFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 732 ~~~ll~~l~~~-l~d~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 809 (927)
.+.++..+... ..+..+.+|..+...+..+.-...- ...+....|-..+...++|. ..++|+.|+.|+.-++
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~------~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD------QIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch------HHHHHHHHHHHHHHHH
Confidence 34555555532 3457788998877666655533221 24556677888888888764 3569999999999988
Q ss_pred hhcCCCCCHhhHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHH
Q 002400 810 QFHRDSIDAAQVVPAWLSCLPL-KGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTAS 888 (927)
Q Consensus 810 ~~~~~~~~~~~~l~~~l~~Lp~-~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 888 (927)
....... .++.....-..... ..|...+-.+..+|..++-.. |.+++. .+|+.+..++..... +.-++.
T Consensus 1598 ~~s~~~~-~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vlaf-Py~vP~---wip~~L~~Ls~fa~e-----~~~i~~ 1667 (1710)
T KOG1851|consen 1598 QGSKFQF-VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAF-PYVVPL---WIPKPLMNLSSFARE-----SAAIKQ 1667 (1710)
T ss_pred hcccccc-chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhc-cccchh---hhHHHHHHHHhhcCC-----chHHHH
Confidence 8643332 22222222222222 245555667788888888654 666664 688888888887642 366888
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCC
Q 002400 889 RMINLLRQLQQSLPPSTLASTWSSLQ 914 (927)
Q Consensus 889 ~~~~~l~~~~~~~~~~~~~~~~~~l~ 914 (927)
.+.+.+..++....++ |+.==+++.
T Consensus 1668 tvkktvseFrrth~D~-W~~~k~~f~ 1692 (1710)
T KOG1851|consen 1668 TVKKTVSEFRRTHADT-WREHKQSFN 1692 (1710)
T ss_pred HHHHHHHHHHHHhhhh-hhhhhhccC
Confidence 8888899888887766 876444443
No 400
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=33.65 E-value=2.1e+02 Score=26.19 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhh
Q 002400 885 QTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSIL 925 (927)
Q Consensus 885 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 925 (927)
.+|.+...++-....++....+..++++|+.+++..|.+++
T Consensus 70 ~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYi 110 (152)
T PF04699_consen 70 AVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYI 110 (152)
T ss_dssp HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHH
Confidence 67777777777777777766799999999999999998875
No 401
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=33.60 E-value=1.5e+02 Score=24.95 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhcc-CCCCchHHHHHHHHHHHhHhcCC
Q 002400 340 RWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMD-DFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 340 r~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~-~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
|......++.++... +..+... -..-+|.++++.. |..+|.+|+.|..|+.++++...
T Consensus 3 K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 444555666665432 2222211 1234777777542 33789999999999999998875
No 402
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=33.39 E-value=8.1e+02 Score=28.32 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=93.1
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC--CCC-ch---HHHHHHHHHHHhHh
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD--FQN-PR---VQAHAASAVLNFSE 395 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~--~~~-~~---v~~~a~~al~~l~~ 395 (927)
..++..++..=.-.+..+|..|+.|+..++....+.+..+.+...+-..+....- ... |. .+..+...++.=.+
T Consensus 281 k~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~ 360 (661)
T KOG2256|consen 281 KKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQ 360 (661)
T ss_pred HHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHH
Confidence 3444444433344577899999999999888777655444444443333332211 011 11 12222211110000
Q ss_pred cCCCccccCchHHHHHHHHHHhcCCChhHHHHH---------HHHHHHHH--HHhhhhhHHhHHHHHHHHHHHHhcccCc
Q 002400 396 NCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGA---------LTALASVA--DSSQGQFQKYYDAVMPYLKAILVNANDK 464 (927)
Q Consensus 396 ~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a---------~~al~~l~--~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 464 (927)
.+-... --|+.++--.|-.++...+..-...+ --....++ ......+.|....++..+...+.-...+
T Consensus 361 ~~Yq~a-F~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~ 439 (661)
T KOG2256|consen 361 VSYQHA-FVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTP 439 (661)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcc
Confidence 000000 12566666667666665543222111 11122222 1222345566666666666666555556
Q ss_pred chhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH
Q 002400 465 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 502 (927)
Q Consensus 465 ~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 502 (927)
....+|-.++..+..+++..| .|-|.++.+++.+-.
T Consensus 440 qy~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 440 QYYPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred cchhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 778899999999999988887 577777776666544
No 403
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=32.24 E-value=1.6e+02 Score=28.14 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHH
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILL 79 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~L 79 (927)
++.+..+|..+.-.+.+..+++.+.+..+..-.|.. -++.+.. -.++.+|++|.-.|
T Consensus 44 p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~----AL~LL~~~f~~~~VR~yAv~~L 101 (184)
T PF00613_consen 44 PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED----ALELLSPNFPDPFVRQYAVRRL 101 (184)
T ss_dssp GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH----HHHCTSTT---HHHHHHHHHHH
T ss_pred chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH----HHHHHHhhccHHHHHHHHHHHH
Confidence 444444444444444445555555555554433321 1223222 22355555555444
No 404
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=31.07 E-value=4.8e+02 Score=24.93 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=52.4
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHh
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 446 (927)
+.+..-..+ ++.-+|..++.++..+... ..+.+.+++.+-..+.+.+..||..+-++|..++...++...+|
T Consensus 108 ~~~~~w~~s-~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKS-ENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhC-CcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 556666777 7888888888777666544 24677788888888888888999998888888887644433333
No 405
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=30.40 E-value=1.1e+03 Score=28.85 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH--HhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHH
Q 002400 468 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLL 545 (927)
Q Consensus 468 ~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 545 (927)
.+|.+.++.+..+-..- -.-|-.+|+...+- +....++.+-.++....+++.+++..+......-+-.+++.++
T Consensus 445 ~Vrik~~~~l~~~~l~n----r~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~ 520 (1697)
T KOG3687|consen 445 AVRIKVLDVLSFVLLIN----RQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVM 520 (1697)
T ss_pred eEEEeeHHHHHHHHhhh----hhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHH
Confidence 34544555555443211 11234556654332 2222344444577888888999988776655555556666666
Q ss_pred HH
Q 002400 546 QS 547 (927)
Q Consensus 546 ~~ 547 (927)
+.
T Consensus 521 ~r 522 (1697)
T KOG3687|consen 521 AR 522 (1697)
T ss_pred hc
Confidence 65
No 406
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=30.40 E-value=7.4e+02 Score=26.98 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHH
Q 002400 230 PLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQI 309 (927)
Q Consensus 230 p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i 309 (927)
|.+++.+.+.+.++|.+....+.-++..++..+..-+.-.-..++..++..+. ++.-.+.+.+..+|++.+|..+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~-----~~~~vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLM-----QEKDVDGNVERQHACLSALRNL 388 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-----HhcCCCccchhHHHHHHHHHhc
Confidence 55677777777777777777777778888876543222222233333332221 1122357888999999999987
Q ss_pred hhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH--hHhhHHHHHHHhccCCCC-chHHHH
Q 002400 310 AEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ--FHHRLLPALVGAMDDFQN-PRVQAH 385 (927)
Q Consensus 310 ~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~il~~ll~~l~~~~~-~~v~~~ 385 (927)
+--.++.- ..++ -+.+.++..++-..|.|..--.-++..+... .+....+ -....+..+..--.+ ++ ..|...
T Consensus 389 ~IPv~nka-~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks-~D~aGv~gE 465 (604)
T KOG4500|consen 389 MIPVSNKA-HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKS-PDFAGVAGE 465 (604)
T ss_pred cccCCchh-hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhC-Cccchhhhh
Confidence 75433210 1111 2455666677777777765444444333221 1111111 123455555555555 33 336556
Q ss_pred HHHHHHHhHhcCCCccccCc--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 002400 386 AASAVLNFSENCTPDILTPY--LDGIVSKLLVLLQNGKQMVQEGALTALASVADS 438 (927)
Q Consensus 386 a~~al~~l~~~~~~~~~~~~--l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~ 438 (927)
.-..+..+++......+..- -...+...+.++...+-..+..++-++..+...
T Consensus 466 SnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 466 SNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred hhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 66666666665332111100 112356666666666777788888777776543
No 407
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=30.15 E-value=1.3e+02 Score=21.72 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 168 SRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 168 ~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+.++..+++....+-+.+..++.+.-..=++++|..-+++|.-+-
T Consensus 3 a~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLR 47 (52)
T PF08158_consen 3 AHVAHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLR 47 (52)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 455667777766666777777776544448999999998887654
No 408
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=29.28 E-value=7.5e+02 Score=26.66 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=30.2
Q ss_pred hcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHH
Q 002400 606 LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAK 649 (927)
Q Consensus 606 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~ 649 (927)
+......|+.++..-+.+.+ ...+.+.......+++.+++.+.
T Consensus 59 m~~k~~~Y~g~~~k~i~p~l-~~~~se~l~~~Y~~lg~lvk~c~ 101 (373)
T PF14911_consen 59 MVTKLLEYFGDFEKWIKPYL-KSKSSEGLQRIYRVLGILVKHCS 101 (373)
T ss_pred HHHHHHHHHHHHHHHcCCcc-ccCCHHHHHHHHHHHHHHHHhcc
Confidence 34445677777777777766 33467777888888888888764
No 409
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=29.07 E-value=1.2e+02 Score=21.07 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 002400 99 STQANLKSVLLVQLQNETNKSIIKKICDAVSELAAS 134 (927)
Q Consensus 99 ~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~ 134 (927)
...+.+|+.+++.|.+. ++..|.++..+|+.+.+.
T Consensus 3 ~~~eYLKNvl~~fl~~~-~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESR-EPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTS-S---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHCC
Confidence 35678999999999986 577888888888887653
No 410
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=28.74 E-value=3.9e+02 Score=23.14 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH-hHHH
Q 002400 371 VGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK-YYDA 449 (927)
Q Consensus 371 l~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~~~ 449 (927)
++.|.. ....++....+++.+.- +...+++.+.+.+...++.-|-..+-.+..++..++....+ |...
T Consensus 6 L~~L~~-s~~~I~~lt~~~~~~~~----------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~ 74 (121)
T smart00582 6 LESLNN-SQESIQTLTKWAIEHAS----------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDE 74 (121)
T ss_pred HHhccc-cHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHH
Confidence 344444 45566666666655431 23456666666666555555666777777887777654322 3344
Q ss_pred HHHHHHHH
Q 002400 450 VMPYLKAI 457 (927)
Q Consensus 450 i~~~L~~~ 457 (927)
+.|.+...
T Consensus 75 ~~~~~~~~ 82 (121)
T smart00582 75 LGPVFQDA 82 (121)
T ss_pred HHHHHHHH
Confidence 44444443
No 411
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=28.26 E-value=4.1e+02 Score=23.32 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCCCCccchHHHHHHHhcCC--ChHHHHHHHHHHHHhhhhhHHHHHHhH
Q 002400 126 DAVSELAASVLPDGDWPELIPFIFQCLVTF--NDKIQESALLILSRMSQFVSEVLIAHG 182 (927)
Q Consensus 126 ~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~--~~~~r~~al~~l~~l~~~~~~~l~~~~ 182 (927)
..+..|++..+....+++++..|...+.+. +..+..-++.++..|+..-++.+...+
T Consensus 20 ~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 20 TLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 346666666555467888999999888765 566677799999999887766554433
No 412
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=27.83 E-value=1.9e+02 Score=25.76 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHHhhC-ChhhHHHHHhcCCHHHHHHHHHhh
Q 002400 873 EVLCGGKDLVTEQTASRMINLLRQLQQSL-PPSTLASTWSSLQPQQQLALQSIL 925 (927)
Q Consensus 873 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~ 925 (927)
.+|++.++.+.++++.-+-.++...++.- ..+.++.+|..+|.=.-.-++.++
T Consensus 120 ~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye~vwkKmPaY~~nil~~~l 173 (175)
T PF04876_consen 120 NFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYEKVWKKMPAYFSNILQPYL 173 (175)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHhhHHHHHHHHHHh
Confidence 34554455666666666666666555443 377899999999988777777654
No 413
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=27.82 E-value=8.3e+02 Score=26.72 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=80.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHhh-ChhHHH----HHHHHHHhcCCChhHHHHHHHHHH
Q 002400 8 QQELALLLGPNPAHFETLISNLMSSSNEH--RSHAEVLLSHLRQS-HPDAFA----LNLSRMLSSSSLPECRAMSAILLR 80 (927)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~L~~~~s~d~~~--r~~Ae~~l~~~~~~-~p~~~~----~~L~~il~~~~~~~~R~~a~v~Lk 80 (927)
|.--++| -+...+..+|..+++|+.+. |-+|-..|+++... |.+... ..++.+......++.....+-+|.
T Consensus 170 q~LCD~i--R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 170 QGLCDAI--RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred HhhhhHh--hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHH
Confidence 3334455 33567888899999998876 88888888875432 233111 112222222555555555555666
Q ss_pred hhcccCccccccccccCHhHHHHHHHHHHHH---------HhhcchhhHHHHHHHHHHHHHhccCCCC-------Cccch
Q 002400 81 KHLTRDDSTSFIFTRLAPSTQANLKSVLLVQ---------LQNETNKSIIKKICDAVSELAASVLPDG-------DWPEL 144 (927)
Q Consensus 81 ~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~---------l~~~~~~~vr~~~~~~i~~ia~~~~~~~-------~w~~l 144 (927)
+.++.. + ..-+.|+.+ ... .++.+-+..+-+++.++-+..... .-++.
T Consensus 248 ~mFKHS-----------e----et~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW 311 (832)
T KOG3678|consen 248 HMFKHS-----------E----ETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW 311 (832)
T ss_pred HHhhhh-----------H----HHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence 666543 1 112222221 222 467777778888888877643211 11221
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 002400 145 IPFIFQCLVTFNDKIQESALLILSRMSQ 172 (927)
Q Consensus 145 l~~l~~~l~s~~~~~r~~al~~l~~l~~ 172 (927)
|+-+..+.+...|..|+.+...++.
T Consensus 312 ---LF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 312 ---LFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred ---hhhhhcchHHHHHHHHHHHHhhhhh
Confidence 3333445677778778777776654
No 414
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=27.50 E-value=2.2e+02 Score=26.13 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=45.3
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
|..+|.++..+.-.++.....+..++..=... .....+.++..... ++.||..|++++..+-
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~-------~~~~aL~LL~~~~~--~~~vr~yAv~~L~~~~--------- 99 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPL-------SPEDALELLSPKYP--DPVVRQYAVRVLESAS--------- 99 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCC-------CHHHHHHHcCCcCC--CHHHHHHHHHHHHhCC---------
Confidence 46677776666655554444444443321111 11223444433333 5899999999887754
Q ss_pred HHhHHhhHHHHHHHHHH
Q 002400 222 KERFLDLLPLMMRTLTE 238 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~ 238 (927)
.+.+..++|.+++.+..
T Consensus 100 ~~~l~~ylpQLVQaLky 116 (152)
T cd00864 100 DDELLLYLPQLVQALKY 116 (152)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 14567788888888753
No 415
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=27.37 E-value=5e+02 Score=24.02 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred Cccch----HHHHHHHhcCC--ChHHHHHHHHHHHHhhhhhHHHHHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 140 DWPEL----IPFIFQCLVTF--NDKIQESALLILSRMSQFVSEVLIAHGD-TLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 140 ~w~~l----l~~l~~~l~s~--~~~~r~~al~~l~~l~~~~~~~l~~~~~-~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
.|..+ +..+...++.. ++.+.+.++.+|..++...+.....-.. .-++.+...++.++.+++..|+..+..++
T Consensus 51 sWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 51 SWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred chhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68654 44444555432 5788889999999888765543221111 12455666677789999999999999988
Q ss_pred HhhC
Q 002400 213 MNCL 216 (927)
Q Consensus 213 ~~~~ 216 (927)
..-
T Consensus 131 -~kA 133 (160)
T PF11841_consen 131 -LKA 133 (160)
T ss_pred -hcC
Confidence 444
No 416
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=27.01 E-value=1.4e+02 Score=22.91 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=30.8
Q ss_pred cccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 002400 90 SFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSE 130 (927)
Q Consensus 90 ~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ 130 (927)
..+|..++++.|+.+..++...|..-+++.|+......+..
T Consensus 14 ~~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~ 54 (68)
T PF06628_consen 14 RDLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYK 54 (68)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence 44588899999999999999999876555477765555544
No 417
>PF14961 BROMI: Broad-minded protein
Probab=26.56 E-value=5.5e+02 Score=32.10 Aligned_cols=131 Identities=12% Similarity=0.202 Sum_probs=78.0
Q ss_pred HHHHhccCCCCH-HHHHHHHHHHHHhHhhhchhH-HHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcccc
Q 002400 326 SMVLNSFQDPHP-RVRWAAINAIGQLSTDLGPEL-QTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILT 403 (927)
Q Consensus 326 ~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~-~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~ 403 (927)
..+...+.-.+| .||.+|+..|..+.- .++ ..++++.+-..|...|.| +++.+...+.....++....+.....
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~---SDVls~E~W~~L~~~L~~~LsD-pD~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPP---SDVLSCESWSVLRENLTDALSD-PDPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCCh---hhccccccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCCchhhhH
Confidence 455555544444 699999998876532 222 246788889999999999 99999999999888887766543322
Q ss_pred CchHHHHHHHHHHhcCCC---h----------hHHHHHHHHHHHHHHH---hhh----hhHHhHHHHHHHHHHHHhc
Q 002400 404 PYLDGIVSKLLVLLQNGK---Q----------MVQEGALTALASVADS---SQG----QFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 404 ~~l~~l~~~L~~~l~~~~---~----------~v~~~a~~al~~l~~~---~~~----~~~~~~~~i~~~L~~~l~~ 460 (927)
.....++..|...+.+.. + .--...+..+.-+.+- ++. ...+|++.++..-..++..
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 233344444433321110 0 0112333333333322 222 2346888888887777765
No 418
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.41 E-value=1.6e+03 Score=29.41 Aligned_cols=139 Identities=13% Similarity=0.174 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH-hHHHHHHHHHHHHhcccCc------chhhHHHHHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK-YYDAVMPYLKAILVNANDK------SNRMLRAKSMECI 477 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~~~i~~~L~~~l~~~~~~------~~~~lr~~a~~~l 477 (927)
|++.+ -.+-.........+|..++..+-.+....|++|.+ +-..+...+..+......+ .+| +...+..++
T Consensus 1172 wfP~l-~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW-~~tT~~~Al 1249 (1514)
T KOG0929|consen 1172 WFPML-FQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEW-LSTTCNHAL 1249 (1514)
T ss_pred eehhH-hhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHH-HHHHHHHHH
Confidence 34433 33444444677889999999999999999999875 4455555555544332111 112 112222233
Q ss_pred HHHHHhhC--cchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccch-hhhHHHHHHHc
Q 002400 478 SLVGMAVG--KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYM-SVVMPPLLQSA 548 (927)
Q Consensus 478 ~~l~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~~l 548 (927)
-.++.... .+.....++.++..+..... .+++.+......||..+....|..|..+- ..+...+.+..
T Consensus 1250 ~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~---~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1250 QALVDLFTQFFKQLNNLLPKVLGLLVGCIK---QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 22222111 01122233333333333221 23344666778888888888888775432 33344443333
No 419
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=26.41 E-value=62 Score=26.83 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHH
Q 002400 866 KIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQ 917 (927)
Q Consensus 866 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 917 (927)
.+=.++-+++...=..-++.++..+..++..+....|++ |+.+.....|+.
T Consensus 39 ~lK~~ipeal~t~C~KCt~kQK~~~~kv~~~l~~~~P~~-w~~l~~KyDp~~ 89 (95)
T PF03392_consen 39 ELKKVIPEALKTNCAKCTPKQKENARKVIKFLKKNYPDE-WEELVKKYDPEG 89 (95)
T ss_dssp HHHHHHHHHHHCTTTTS-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTT-
T ss_pred HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHCCCc
Confidence 444556666654222457899999999999999999987 999998887654
No 420
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=25.97 E-value=7.8e+02 Score=25.80 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHcc-CCChhHHhhH--hHHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACN-DKHPDVRQAA--VYGIGVCAEFGGSVFKPLVGEALSRLDFV 783 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~vr~~a--~~~lg~l~~~~~~~~~~~~~~il~~L~~~ 783 (927)
...+......|-.+...-|.. .+++..++..=+.... +++.-.|.|. ..+++...+..| .+|+..+++.+.+-
T Consensus 27 ~~~~~ela~~Lv~if~~~~~~-~~~l~~Li~~EI~~~~~~~~~lfRgNsl~tK~~~~y~k~~G---~~YL~~~L~p~I~~ 102 (309)
T cd05136 27 VRAKEELACALVHVLQSTGKA-KDFLTDLVMAEVDRCGENERLIFRENTLATKAIEEYLKLVG---QDYLQDTLGEFIRA 102 (309)
T ss_pred chhHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHhccccHHHHHhcCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Confidence 344455556666666665542 3444444433333344 4555677776 455555555444 56666666655543
Q ss_pred h
Q 002400 784 I 784 (927)
Q Consensus 784 l 784 (927)
+
T Consensus 103 i 103 (309)
T cd05136 103 L 103 (309)
T ss_pred H
Confidence 3
No 421
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=25.97 E-value=5.8e+02 Score=24.30 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=45.8
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch
Q 002400 141 WPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG 220 (927)
Q Consensus 141 w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~ 220 (927)
-|+.+|.++..+.=.++.....+...+..=... .....+.++..... ++.||..|++++..+-
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~-------~~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~~-------- 104 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAPL-------DPEDALELLSPKFP--DPFVRAYAVERLESAS-------- 104 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCC-------CHHHHHHHhCccCC--CHHHHHHHHHHHHhCC--------
Confidence 356676666555544444344444444432211 12234455544333 6789999998876654
Q ss_pred hHHhHHhhHHHHHHHHHH
Q 002400 221 EKERFLDLLPLMMRTLTE 238 (927)
Q Consensus 221 ~~~~~~~~~p~ll~~l~~ 238 (927)
.+.+..++|.+++.+..
T Consensus 105 -d~~l~~yLpQLVQaLr~ 121 (184)
T smart00145 105 -DEELLLYLLQLVQALKY 121 (184)
T ss_pred -HHHHHHHHHHHHHHHHc
Confidence 13566788888888754
No 422
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=25.71 E-value=3.2e+02 Score=26.06 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=47.4
Q ss_pred CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 140 DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 140 ~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
.-|+.+|.++..+.-.++.....++..+..-...- ....+.++..... ++.||..|+++|..+-
T Consensus 42 ~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~-------p~~AL~LL~~~f~--~~~VR~yAv~~L~~~~------- 105 (184)
T PF00613_consen 42 NNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPIS-------PEDALELLSPNFP--DPFVRQYAVRRLESLS------- 105 (184)
T ss_dssp TSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTT-------HHHHHHCTSTT-----HHHHHHHHHHHCTS--------
T ss_pred hCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCC-------HHHHHHHHHhhcc--HHHHHHHHHHHHHHcC-------
Confidence 34778888887776666655555666555422211 1223333333222 5889999998876643
Q ss_pred hhHHhHHhhHHHHHHHHHH
Q 002400 220 GEKERFLDLLPLMMRTLTE 238 (927)
Q Consensus 220 ~~~~~~~~~~p~ll~~l~~ 238 (927)
.+.+..++|.+++.+..
T Consensus 106 --d~~l~~yLpQLVQaLr~ 122 (184)
T PF00613_consen 106 --DEELLFYLPQLVQALRY 122 (184)
T ss_dssp --HHHHHHHHHHHHHHGGG
T ss_pred --chHHHHHHHHHHHHhee
Confidence 24567788888887753
No 423
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=25.69 E-value=2.2e+02 Score=24.96 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCCccchHHHHHHHh---cCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhC
Q 002400 125 CDAVSELAASVLPDGDWPELIPFIFQCL---VTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLG 194 (927)
Q Consensus 125 ~~~i~~ia~~~~~~~~w~~ll~~l~~~l---~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~ 194 (927)
...+..|+...+.......++..|...+ ...+..+..-++.+|..|+..-++.+...+..-...+..+..
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~ 93 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQD 93 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcce
No 424
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=25.18 E-value=3e+02 Score=25.75 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHHHHhhc
Q 002400 98 PSTQANLKSVLLVQLQNE 115 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~ 115 (927)
.+.....-.+|+++|+.|
T Consensus 100 ddeL~~yLpQLVQaLkyE 117 (169)
T cd00869 100 NDELLDYLPQLVQALKFE 117 (169)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 333444445555555544
No 425
>PF14961 BROMI: Broad-minded protein
Probab=25.00 E-value=1.8e+02 Score=35.88 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCC-CCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLP-DGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV 177 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~-~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 177 (927)
+.+++.|.......||..+.+.+..+--.+.. ...|+.+-..|...+.++|+...+.++..........+-.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 66777777777889999998888765443333 2599999999999999999999999999999988776544
No 426
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=24.64 E-value=2.5e+02 Score=26.24 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=45.0
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
|..++.++..+.=.++.....+...+..=... .....+.++..... +..||..|+++|..+-
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i-------~~~~aLeLL~~~f~--~~~VR~yAV~~L~~~s--------- 106 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKI-------DIEDALELLSPYFT--NPVVRKYAVSRLKLAS--------- 106 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCC-------CHHHHHHHcCccCC--CHHHHHHHHHHHHhCC---------
Confidence 55666666555434444344444444432211 12233444433332 6889999999888754
Q ss_pred HHhHHhhHHHHHHHHHH
Q 002400 222 KERFLDLLPLMMRTLTE 238 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~ 238 (927)
...+..++|.+++.+..
T Consensus 107 d~eL~~yL~QLVQaLKy 123 (166)
T cd00870 107 DEELLLYLLQLVQALKY 123 (166)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 14567788888888865
No 427
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=22.77 E-value=1.3e+03 Score=28.54 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhhhHH
Q 002400 160 QESALLILSRMSQFVSE 176 (927)
Q Consensus 160 r~~al~~l~~l~~~~~~ 176 (927)
....+.+...+.+.++.
T Consensus 80 H~KTLEvY~yIFe~Ig~ 96 (1618)
T COG5221 80 HNKTLEVYSYIFERIGR 96 (1618)
T ss_pred hhhhhhHHHHHHHHHhH
Confidence 34455566666666553
No 428
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=22.63 E-value=3.9e+02 Score=23.10 Aligned_cols=58 Identities=16% Similarity=-0.019 Sum_probs=34.8
Q ss_pred ChhHHhhHhHHHHHHHhhcCC---CcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHH
Q 002400 747 HPDVRQAAVYGIGVCAEFGGS---VFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALG 806 (927)
Q Consensus 747 ~~~vr~~a~~~lg~l~~~~~~---~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~ 806 (927)
+++....|....-.++...+. .+..+..+++..|..+=+.-+ .+.....|.+|+.|++
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~--~~~Fe~~R~~alval~ 78 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFD--IENFEELRQNALVALV 78 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT----TTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCC--ccCHHHHHHHHHHHHH
Confidence 567777788888888887665 899999999999887644322 2234567777666553
No 429
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=22.52 E-value=1.3e+03 Score=27.07 Aligned_cols=235 Identities=16% Similarity=0.161 Sum_probs=109.3
Q ss_pred hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHH-HHHHHhcC------ChhHHHHHHH
Q 002400 181 HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRT-LTEALNKG------NESSAQEALE 253 (927)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~-l~~~l~~~------~~~~~~~a~~ 253 (927)
+.+.++.++....++.+..+|-.+++.+..++ ..++ ....+.|-+++....+- ..+.++.+ +|-+-..++.
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~-srl~-w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~ 320 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKII-SRLP-WNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAIL 320 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHH-hhcc-cccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence 45666777777777778899999999888887 5553 11223333333322222 11222221 2222222222
Q ss_pred HHHHHHccCcHHHHH-HHHHHHHHHHHHhhccCchhhhhCC-cchhHHHHHHHHHHHHhhhchHHHHhhHHHHH-HHHHh
Q 002400 254 LLIELAATEPRFLRK-QLVDVVGSMLQVAEAEAVFPGFLAA-PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVV-SMVLN 330 (927)
Q Consensus 254 ~l~~l~~~~~~~~~~-~l~~ll~~ll~~~~~~~~i~~~l~~-~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~-~~l~~ 330 (927)
++ .+++..+.-+.. .+..+++.-+ .+=.++.+. +-...|+++...+=++..+..+.+.+.++..+ ..+++
T Consensus 321 ~~-ala~~~~id~~d~~i~~iI~kg~------~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~ 393 (993)
T COG5234 321 FF-ALAGAGLIDYSDCLILPIIEKGL------SYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQ 393 (993)
T ss_pred HH-HHhhccccchhhhhhhhhecccc------ceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHh
Confidence 22 233332221111 1112222111 000111111 22456777766665555553444444455444 34444
Q ss_pred -ccCCCCHHHHHHHHHHHHHhHhh-hchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHH
Q 002400 331 -SFQDPHPRVRWAAINAIGQLSTD-LGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDG 408 (927)
Q Consensus 331 -~l~d~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~ 408 (927)
.+-||+-.+|++|.-++-..... .+. ..-.. ++..++-...++ -..+...+.......++ +.. ..+
T Consensus 394 ~alFDpel~vRr~a~Aal~E~iGR~~s~----a~g~~----lIslIN~~sv~r-~s~csg~~~r~~~~~~k--~~~-Ced 461 (993)
T COG5234 394 TALFDPELNVRRAATAALFEVIGRHASI----ADGLS----LISLINYVSVTR-ISNCSGDLCRKVAHFPK--FRS-CED 461 (993)
T ss_pred hhhcCchhhhhhHHHHHHHHHhccCCCc----ccchh----hhhhccceecch-hhhcchHHHHHhcCccc--cch-HHH
Confidence 78999999999988777544322 111 11111 122222211222 12222333333322221 111 223
Q ss_pred HHHH-HHHHhcCCChhHHHHHHHHHHHHH
Q 002400 409 IVSK-LLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 409 l~~~-L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
+.+. |+..+.+.+++++...--++..+.
T Consensus 462 VF~diLl~Nl~H~~~~~k~~~~y~l~~li 490 (993)
T COG5234 462 VFQDILLTNLQHWDVKVKQLSAYSLRQLI 490 (993)
T ss_pred HHHHHHHhhhhccchhhhhhccccHHHHh
Confidence 3333 666777778888877766666664
No 430
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=22.34 E-value=7.4e+02 Score=24.25 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=52.4
Q ss_pred CChhhHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHH
Q 002400 705 KTAEERRIAICIFDDVMEHCREAALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRL 780 (927)
Q Consensus 705 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L 780 (927)
.-...|..+++.+|.+++.....+..++ .+++|.+++.+...++.-+--|++.+|.+.-. +.-..|+-+.++..
T Consensus 158 ~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRF 233 (315)
T COG5209 158 KFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERF 233 (315)
T ss_pred ccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 3445789999999999999888887755 48999999988877777677777777765432 23344544444443
No 431
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.55 E-value=1.3e+03 Score=26.74 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHHhhC
Q 002400 161 ESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 161 ~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~ 216 (927)
...-.+|..|+..+|.. ...+.+.+.+.+-.- +......-++.+..+. .+.
T Consensus 143 ~~vH~~L~~Il~lvP~s----~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~ 195 (563)
T PF05327_consen 143 ERVHDALQKILRLVPTS----PSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYC 195 (563)
T ss_dssp --HHHHHHHHHHH-GGG----HHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-
T ss_pred HHHHHHHHHHHHHcCCC----HHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cch
Confidence 33445555555555442 345666666665543 4455556666666666 554
No 432
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=21.22 E-value=1.9e+02 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.044 Sum_probs=27.6
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhH
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVS 175 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 175 (927)
-++.++.+..|..+..|..|+.+|+.++....
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 37888889999999999999999999887653
No 433
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.84 E-value=4.6e+02 Score=21.29 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=22.2
Q ss_pred hcCCCHHHHHHHHHHH---hCC---CHHHHHHHHHHHHHHHh
Q 002400 14 LLGPNPAHFETLISNL---MSS---SNEHRSHAEVLLSHLRQ 49 (927)
Q Consensus 14 ~~~~~~~~l~~~L~~~---~s~---d~~~r~~Ae~~l~~~~~ 49 (927)
.|.++.+.+.++++-+ .+. =.++|+.|++....+.+
T Consensus 7 ~~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 7 LMNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred chhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 4556666666555444 222 23589999988877765
No 434
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.68 E-value=7.5e+02 Score=23.67 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCC-CCccchHHHHHHHhcCCChH--HHHHHHHHHHHhhhhhHHHH
Q 002400 102 ANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPD-GDWPELIPFIFQCLVTFNDK--IQESALLILSRMSQFVSEVL 178 (927)
Q Consensus 102 ~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~-~~w~~ll~~l~~~l~s~~~~--~r~~al~~l~~l~~~~~~~l 178 (927)
..+-..+++... |+-..||..++.++..+.....+. ...| -.+.+...+..+... .-..+-.++..++.... +
T Consensus 6 ~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--~ 81 (193)
T PF12612_consen 6 QQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD--L 81 (193)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--c
Confidence 334444444433 457789999999999998544331 1222 334444444332211 01112223333332211 1
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 002400 179 IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIEL 258 (927)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l 258 (927)
..+...++.-+.-.....++.+...|..+|..++ ...+ ........++..++..+..- ..++.+....++++.-+
T Consensus 82 ~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~-~~~~--~~~~~~~~v~~~l~~il~~~--~~~dRv~vP~l~tl~~L 156 (193)
T PF12612_consen 82 PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYL-RELS--DSPEELEQVLSDLLSILKEN--LRNDRVVVPLLKTLDFL 156 (193)
T ss_pred HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHH-HHhh--cCHHHHHHHHHHHHHHHHHh--CCCCCeeecHHHHHHHH
Confidence 1244455555555555667888888999999988 4321 12234444555555555432 23455555666666555
Q ss_pred Hcc
Q 002400 259 AAT 261 (927)
Q Consensus 259 ~~~ 261 (927)
.+.
T Consensus 157 l~~ 159 (193)
T PF12612_consen 157 LSS 159 (193)
T ss_pred HhC
Confidence 443
No 435
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=20.62 E-value=4.9e+02 Score=25.45 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=48.5
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
..||++++......++.+.-.|..++.....-+..-. ....+++.+...++|...-|+.+.-.+|..+.
T Consensus 114 ~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-----~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~ 182 (222)
T COG4912 114 PLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-----DLLEIFEIIELLLGDKEFFVQKAIGWALRQIG 182 (222)
T ss_pred ccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-----chhHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 5899999999666666666555555544433332221 22368888999999988889998888888887
No 436
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=20.50 E-value=9e+02 Score=24.52 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=63.3
Q ss_pred cchhHHHHHHHHHHHHhhhc--hHHHHhhHH-HHHHHHHhccCCC---CHHHHHHHHHHHHHhHhhhchhH-HHHhHhhH
Q 002400 294 PEWQKHHAVLIALAQIAEGC--SKVMIKNLD-QVVSMVLNSFQDP---HPRVRWAAINAIGQLSTDLGPEL-QTQFHHRL 366 (927)
Q Consensus 294 ~~~~~r~aal~al~~i~~~~--~~~~~~~l~-~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~i 366 (927)
.....+.-+++++..+-... ...+..+.. .+++.+....... +..+|-+++..+-.++....... ..+....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 44556666667776665532 234445555 5666666655554 78899999888888876553322 12233346
Q ss_pred HHHHHHhccC-CCCchHHHHHHHHHHHhH
Q 002400 367 LPALVGAMDD-FQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 367 l~~ll~~l~~-~~~~~v~~~a~~al~~l~ 394 (927)
+..+.+.+.. ..++++.-+++.|+++++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 6666664432 146888889999999998
No 437
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=20.42 E-value=3.4e+02 Score=25.41 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHH
Q 002400 185 LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTE 238 (927)
Q Consensus 185 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~ 238 (927)
-++++..... +..||..|++++..+- . +.+..++|.+++.+..
T Consensus 74 ALeLL~~~f~--d~~VR~yAV~~L~~~~-d--------deL~~yLpQLVQaLky 116 (169)
T cd00869 74 ALELLLPKFP--DQEVRAHAVQWLARLS-N--------DELLDYLPQLVQALKF 116 (169)
T ss_pred HHHHcCCcCC--ChHHHHHHHHHHHhCC-H--------HHHHHHHHHHHHHHHc
Confidence 3444444333 4679999998887754 1 3466788888888764
No 438
>COG3351 FlaD Putative archaeal flagellar protein D/E [Cell motility and secretion]
Probab=20.02 E-value=4.5e+02 Score=25.01 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=48.8
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChh
Q 002400 825 WLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPS 904 (927)
Q Consensus 825 ~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 904 (927)
-|..+| .|.-.-..+++||-.|+..+++. +..+++..+-.+= ..+..++.++.++++.+.-.++..
T Consensus 97 ~Le~iP--ed~vsi~v~lkWLeFLl~r~G~~-------n~~dvldyYe~iG-----WIs~~v~~qLl~f~kg~~~~~~~~ 162 (214)
T COG3351 97 KLEEIP--EDVVSIMVALKWLEFLLDRGGPK-------NTLDVLDYYESIG-----WISEKVLEQLLKFAKGTKVMNDDQ 162 (214)
T ss_pred chhcCC--ccHHHHHHHHHHHHHHHHccCch-------hHHHHHHHHHHhh-----hccHHHHHHHHHHHhcCCCCChhh
Confidence 445555 45555567999999999877543 5777777665542 567889999999998888776655
Q ss_pred hHH
Q 002400 905 TLA 907 (927)
Q Consensus 905 ~~~ 907 (927)
.+.
T Consensus 163 ~~~ 165 (214)
T COG3351 163 EEK 165 (214)
T ss_pred hhh
Confidence 444
Done!