Query 002400
Match_columns 927
No_of_seqs 415 out of 3326
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 00:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 8.2E-67 2.8E-71 635.1 69.9 770 19-926 12-851 (852)
2 2bpt_A Importin beta-1 subunit 100.0 5.9E-51 2E-55 499.9 79.6 792 17-898 1-856 (861)
3 1qgr_A Protein (importin beta 100.0 1.2E-50 4.2E-55 498.1 68.1 746 21-851 2-872 (876)
4 1u6g_C TIP120 protein, CAND1; 100.0 1.3E-44 4.6E-49 457.4 62.9 848 15-898 1-1184(1230)
5 1wa5_C Importin alpha RE-expor 100.0 2.6E-42 9E-47 423.0 71.9 729 17-927 2-959 (960)
6 4fdd_A Transportin-1; heat rep 100.0 1.3E-41 4.6E-46 413.4 68.8 653 23-816 51-790 (852)
7 2bpt_A Importin beta-1 subunit 100.0 8.5E-40 2.9E-44 400.8 69.3 696 24-810 99-857 (861)
8 2x19_B Importin-13; nuclear tr 100.0 3.4E-37 1.1E-41 380.8 70.2 648 15-788 19-877 (963)
9 1qgr_A Protein (importin beta 100.0 9.3E-37 3.2E-41 374.6 67.7 702 24-813 39-874 (876)
10 2x1g_F Cadmus; transport prote 100.0 7.2E-38 2.5E-42 386.1 56.2 667 17-813 4-909 (971)
11 3m1i_C Exportin-1; heat repeat 100.0 3.4E-35 1.2E-39 363.0 68.9 685 15-810 11-929 (1049)
12 1u6g_C TIP120 protein, CAND1; 100.0 1.2E-35 4E-40 375.7 57.4 685 57-901 9-766 (1230)
13 4hat_C Exportin-1; heat repeat 100.0 3.8E-31 1.3E-35 317.4 72.2 763 16-899 12-1006(1023)
14 1b3u_A Protein (protein phosph 100.0 2.9E-33 9.8E-38 327.3 47.0 572 105-808 12-585 (588)
15 1ibr_B P95, importin beta-1 su 100.0 5.2E-34 1.8E-38 322.8 34.5 417 21-458 2-460 (462)
16 1b3u_A Protein (protein phosph 100.0 6.6E-32 2.3E-36 315.7 50.0 577 16-762 6-586 (588)
17 3ibv_A Exportin-T; karyopherin 100.0 2.1E-30 7.1E-35 311.3 56.3 652 16-753 2-906 (980)
18 3gjx_A Exportin-1; transport, 100.0 6.1E-29 2.1E-33 295.7 67.8 762 17-900 25-1027(1073)
19 3a6p_A Exportin-5; exportin-5, 99.9 9.8E-22 3.3E-26 243.0 51.9 424 20-460 11-682 (1204)
20 3now_A UNC-45 protein, SD10334 99.9 3.5E-17 1.2E-21 188.0 53.7 680 21-812 7-784 (810)
21 1ibr_B P95, importin beta-1 su 99.9 1.4E-19 4.8E-24 204.2 33.5 422 241-784 11-460 (462)
22 1wa5_C Importin alpha RE-expor 99.9 4.6E-17 1.6E-21 199.5 57.9 625 25-746 90-870 (960)
23 2x19_B Importin-13; nuclear tr 99.9 3.4E-16 1.2E-20 193.1 65.0 732 58-913 28-861 (963)
24 2jdq_A Importin alpha-1 subuni 99.9 2.6E-19 9E-24 201.1 32.4 398 56-480 22-441 (450)
25 2x1g_F Cadmus; transport prote 99.8 5.8E-17 2E-21 199.7 53.9 700 66-852 18-860 (971)
26 3now_A UNC-45 protein, SD10334 99.8 4E-15 1.4E-19 171.0 60.9 688 56-851 8-783 (810)
27 2qk1_A Protein STU2; STU2P, XM 99.8 2.3E-19 7.7E-24 180.3 18.5 204 287-496 21-234 (249)
28 2jdq_A Importin alpha-1 subuni 99.8 2.7E-18 9.4E-23 192.8 27.6 390 22-436 22-442 (450)
29 1wa5_B Importin alpha subunit; 99.8 1.6E-17 5.4E-22 190.0 32.8 363 56-441 89-461 (530)
30 2vgl_B AP-2 complex subunit be 99.8 9.9E-17 3.4E-21 184.7 39.4 296 112-446 22-320 (591)
31 4b8j_A Importin subunit alpha- 99.8 9.2E-17 3.1E-21 183.8 33.2 358 105-485 76-446 (528)
32 1wa5_B Importin alpha subunit; 99.8 8.2E-17 2.8E-21 184.1 31.3 356 105-485 89-460 (530)
33 2z6g_A B-catenin; FULL-length, 99.8 6.4E-15 2.2E-19 174.7 45.8 553 106-786 118-684 (780)
34 4b8j_A Importin subunit alpha- 99.8 2E-16 6.7E-21 181.1 31.1 362 56-441 76-447 (528)
35 3m1i_C Exportin-1; heat repeat 99.7 1.7E-13 6E-18 169.2 56.4 389 324-811 452-879 (1049)
36 2vgl_B AP-2 complex subunit be 99.7 1.2E-15 3.9E-20 175.8 34.5 406 19-485 12-422 (591)
37 2z6g_A B-catenin; FULL-length, 99.7 1.6E-15 5.6E-20 179.8 34.7 541 140-815 112-668 (780)
38 2qk2_A LP04448P; mini spindles 99.7 4.1E-17 1.4E-21 165.1 17.8 196 287-495 20-218 (242)
39 2z6h_A Catenin beta-1, beta-ca 99.7 2.6E-14 8.9E-19 167.1 43.9 523 142-787 13-549 (644)
40 1w63_A Adapter-related protein 99.7 4.6E-14 1.6E-18 162.9 44.3 448 19-530 33-493 (618)
41 1w63_A Adapter-related protein 99.7 4.5E-13 1.5E-17 154.6 48.6 494 289-915 77-591 (618)
42 3ul1_B Importin subunit alpha- 99.7 6.4E-15 2.2E-19 166.5 31.7 363 56-440 59-433 (510)
43 3tpo_A Importin subunit alpha- 99.7 1.1E-14 3.6E-19 165.8 33.2 362 57-440 79-452 (529)
44 1jdh_A Beta-catenin; beta-cate 99.7 2.4E-13 8.1E-18 155.9 43.7 315 142-480 16-337 (529)
45 3ibv_A Exportin-T; karyopherin 99.7 1.1E-10 3.9E-15 140.4 64.6 725 62-901 15-872 (980)
46 4hat_C Exportin-1; heat repeat 99.7 3E-11 1E-15 145.5 58.0 573 55-683 195-911 (1023)
47 2z6h_A Catenin beta-1, beta-ca 99.7 2.7E-14 9.2E-19 167.0 30.1 499 184-812 14-529 (644)
48 1jdh_A Beta-catenin; beta-cate 99.6 8E-14 2.8E-18 159.8 30.9 394 55-479 18-423 (529)
49 3ul1_B Importin subunit alpha- 99.6 1.4E-13 4.9E-18 155.4 29.5 384 21-434 58-475 (510)
50 2vgl_A Adaptor protein complex 99.6 1.9E-12 6.5E-17 148.6 37.6 504 289-914 81-603 (621)
51 3tpo_A Importin subunit alpha- 99.6 3.8E-13 1.3E-17 152.9 31.1 385 20-434 76-494 (529)
52 2vgl_A Adaptor protein complex 99.6 4.2E-11 1.4E-15 137.4 46.2 350 66-456 85-452 (621)
53 2qk2_A LP04448P; mini spindles 99.5 1.4E-13 4.8E-18 139.1 17.2 202 236-455 20-224 (242)
54 2qk1_A Protein STU2; STU2P, XM 99.5 5.3E-14 1.8E-18 141.2 12.9 204 236-450 21-234 (249)
55 3opb_A SWI5-dependent HO expre 99.5 1.1E-08 3.9E-13 115.2 54.1 582 117-787 146-759 (778)
56 3gjx_A Exportin-1; transport, 99.5 3.1E-09 1.1E-13 127.1 50.1 416 334-851 490-957 (1073)
57 4hxt_A De novo protein OR329; 99.4 4.3E-11 1.5E-15 122.0 27.6 241 144-400 3-246 (252)
58 4hxt_A De novo protein OR329; 99.4 1.6E-11 5.5E-16 125.2 23.3 246 185-447 3-251 (252)
59 4db8_A Armadillo-repeat protei 99.4 2.9E-11 9.8E-16 123.3 24.3 241 139-395 8-251 (252)
60 1oyz_A Hypothetical protein YI 99.4 3.5E-11 1.2E-15 124.7 22.6 253 144-477 24-277 (280)
61 1oyz_A Hypothetical protein YI 99.3 1.1E-10 3.7E-15 121.0 23.3 250 106-432 26-277 (280)
62 4db8_A Armadillo-repeat protei 99.3 2.3E-11 7.9E-16 124.0 16.7 235 186-437 14-251 (252)
63 1xm9_A Plakophilin 1; armadill 99.2 1.4E-09 4.7E-14 120.7 26.8 353 56-436 4-448 (457)
64 3l6x_A Catenin delta-1; cateni 99.2 1.8E-08 6.2E-13 112.0 35.5 354 18-395 46-476 (584)
65 2iw3_A Elongation factor 3A; a 99.2 8.8E-09 3E-13 120.3 32.7 306 106-483 17-328 (986)
66 3nmz_A APC variant protein; pr 99.2 1.1E-08 3.6E-13 111.4 30.9 357 18-398 30-453 (458)
67 1xm9_A Plakophilin 1; armadill 99.2 3.9E-09 1.3E-13 117.0 28.0 356 106-479 5-446 (457)
68 3l6x_A Catenin delta-1; cateni 99.2 7.9E-09 2.7E-13 115.0 29.1 349 56-437 50-476 (584)
69 4db6_A Armadillo repeat protei 99.2 4.2E-10 1.4E-14 110.9 15.7 188 288-481 18-208 (210)
70 3a6p_A Exportin-5; exportin-5, 99.2 4.8E-08 1.7E-12 121.1 37.3 549 104-787 13-637 (1204)
71 4db6_A Armadillo repeat protei 99.2 8E-10 2.8E-14 108.8 17.4 190 235-436 16-208 (210)
72 4ady_A RPN2, 26S proteasome re 99.1 3E-06 1E-10 97.9 47.9 623 23-809 18-718 (963)
73 3nmz_A APC variant protein; pr 99.1 1.3E-08 4.4E-13 110.7 26.2 321 103-440 70-453 (458)
74 3ltm_A Alpha-REP4; protein eng 99.1 1.4E-09 4.9E-14 107.0 17.3 189 142-398 18-206 (211)
75 1xqr_A HSPBP1 protein; armadil 99.1 1.6E-08 5.6E-13 103.4 24.4 182 246-440 55-241 (296)
76 3ltj_A Alpharep-4; protein eng 99.1 3.7E-09 1.3E-13 103.1 17.4 186 141-394 12-197 (201)
77 3ltj_A Alpharep-4; protein eng 99.1 6.3E-09 2.2E-13 101.5 18.5 186 182-436 12-197 (201)
78 3ltm_A Alpha-REP4; protein eng 99.1 4.6E-09 1.6E-13 103.3 17.6 188 184-440 19-206 (211)
79 3opb_A SWI5-dependent HO expre 99.0 4.4E-06 1.5E-10 94.4 42.1 370 96-482 285-728 (778)
80 2db0_A 253AA long hypothetical 99.0 2.8E-07 9.7E-12 81.4 23.3 213 104-352 33-246 (253)
81 2db0_A 253AA long hypothetical 99.0 2.3E-07 8E-12 82.0 22.7 215 142-394 31-245 (253)
82 3nmw_A APC variant protein; AR 98.9 4.8E-07 1.6E-11 95.3 25.9 230 156-398 97-337 (354)
83 3nmw_A APC variant protein; AR 98.9 1.5E-07 5E-12 99.2 21.7 267 158-441 47-338 (354)
84 1xqr_A HSPBP1 protein; armadil 98.9 3.7E-07 1.3E-11 93.4 23.8 222 157-394 54-286 (296)
85 4ffb_C Protein STU2; tubulin f 98.8 5.9E-08 2E-12 99.7 17.3 189 287-486 14-216 (278)
86 2iw3_A Elongation factor 3A; a 98.8 2E-07 6.7E-12 109.1 23.4 292 296-648 28-326 (986)
87 2of3_A ZYG-9; multifunctional 98.8 2.6E-07 9E-12 90.9 19.5 187 289-492 53-245 (266)
88 4ady_A RPN2, 26S proteasome re 98.7 6.3E-06 2.1E-10 95.2 28.1 168 291-481 551-718 (963)
89 4gmo_A Putative uncharacterize 98.6 4.3E-05 1.5E-09 88.8 34.1 156 323-482 35-214 (684)
90 3oc3_A Helicase MOT1, MOT1; re 98.5 5.2E-07 1.8E-11 94.6 12.2 236 66-348 185-432 (800)
91 2of3_A ZYG-9; multifunctional 98.5 7.5E-06 2.6E-10 80.6 19.5 195 240-457 55-256 (266)
92 3tjz_B Coatomer subunit gamma; 98.5 4.6E-06 1.6E-10 86.5 18.4 290 94-432 59-348 (355)
93 1vsy_5 Proteasome activator BL 98.4 0.00036 1.2E-08 83.1 35.0 724 96-923 127-989 (997)
94 3b2a_A TON_1937, putative unch 98.4 1.4E-05 4.9E-10 74.4 16.9 220 183-428 32-252 (265)
95 4ffb_C Protein STU2; tubulin f 98.4 4.6E-06 1.6E-10 85.4 15.3 189 238-443 16-218 (278)
96 3b2a_A TON_1937, putative unch 98.3 4.1E-05 1.4E-09 71.4 18.5 178 289-482 40-218 (265)
97 1te4_A Conserved protein MTH18 98.3 1.4E-07 4.8E-12 84.2 1.9 115 286-434 16-130 (131)
98 1vsy_5 Proteasome activator BL 98.2 0.00023 7.7E-09 84.9 25.0 716 19-829 132-943 (997)
99 3tjz_B Coatomer subunit gamma; 98.2 1.9E-05 6.4E-10 81.9 13.8 303 120-477 44-348 (355)
100 3grl_A General vesicular trans 98.1 0.022 7.6E-07 62.9 43.4 209 142-353 121-395 (651)
101 4gmo_A Putative uncharacterize 98.0 0.017 5.8E-07 67.0 37.8 68 144-212 36-104 (684)
102 3oc3_A Helicase MOT1, MOT1; re 97.9 4.8E-05 1.6E-09 80.1 11.4 233 139-436 169-403 (800)
103 1te4_A Conserved protein MTH18 97.8 1.6E-05 5.4E-10 70.7 5.4 82 289-392 49-130 (131)
104 3tt9_A Plakophilin-2; cell adh 97.7 9.9E-05 3.4E-09 71.8 9.7 199 325-526 10-228 (233)
105 3tt9_A Plakophilin-2; cell adh 97.7 0.00077 2.6E-08 65.5 15.8 169 289-460 15-205 (233)
106 3grl_A General vesicular trans 97.5 0.037 1.3E-06 61.1 26.7 322 142-481 20-393 (651)
107 3u0r_A Apoptosis inhibitor 5; 97.4 0.19 6.3E-06 53.0 29.3 292 116-441 40-362 (507)
108 3u0r_A Apoptosis inhibitor 5; 97.1 0.39 1.3E-05 50.6 27.1 285 178-502 24-319 (507)
109 3l9t_A Putative uncharacterize 97.0 0.007 2.4E-07 57.4 12.7 134 289-442 78-212 (240)
110 1vsy_4 Proteasome activator BL 96.8 0.81 2.8E-05 53.1 29.7 301 318-648 334-689 (799)
111 1vsy_4 Proteasome activator BL 96.6 1.7 6E-05 50.3 32.0 269 180-459 335-667 (799)
112 1w9c_A CRM1 protein, exportin 96.4 0.9 3.1E-05 45.6 23.1 169 199-376 44-226 (321)
113 3l9t_A Putative uncharacterize 96.1 0.3 1E-05 46.4 16.9 165 22-212 39-206 (240)
114 1ho8_A Vacuolar ATP synthase s 96.0 2 7E-05 45.6 27.5 345 55-437 78-476 (480)
115 1upk_A MO25 protein; transfera 95.9 1.7 5.7E-05 43.7 23.2 190 143-353 78-284 (341)
116 3fga_B Serine/threonine-protei 95.0 1.6 5.4E-05 45.4 19.1 238 18-270 127-376 (403)
117 4atg_A TAF6; transcription, TF 94.9 0.24 8.1E-06 45.8 11.5 151 177-352 8-162 (196)
118 2npp_B PP2A, B subunit, serine 94.5 5.9 0.0002 42.0 22.5 170 95-272 238-411 (449)
119 1w9c_A CRM1 protein, exportin 94.5 0.86 2.9E-05 45.8 15.2 187 422-647 43-246 (321)
120 4atg_A TAF6; transcription, TF 94.2 1.1 3.6E-05 41.5 14.1 147 316-482 8-162 (196)
121 3fga_B Serine/threonine-protei 94.0 6.6 0.00023 40.8 22.7 235 142-398 128-369 (403)
122 1lsh_A Lipovitellin (LV-1N, LV 93.6 3 0.0001 50.7 20.7 232 118-398 339-579 (1056)
123 3gs3_A Symplekin, LD45768P; he 93.0 7.2 0.00025 38.0 22.9 161 139-315 49-247 (257)
124 3gs3_A Symplekin, LD45768P; he 92.6 8.2 0.00028 37.6 24.1 112 98-212 48-172 (257)
125 1lrv_A LRV, leucine-rich repea 92.0 0.055 1.9E-06 52.8 2.0 183 114-433 60-242 (244)
126 3o2t_A Symplekin; heat repeat, 91.4 15 0.00051 38.1 26.3 188 247-457 41-272 (386)
127 1x5b_A Signal transducing adap 91.1 2.2 7.6E-05 38.3 11.4 78 322-399 51-129 (163)
128 2npp_B PP2A, B subunit, serine 90.4 20 0.0007 37.9 22.2 121 183-317 283-405 (449)
129 1upk_A MO25 protein; transfera 90.4 16 0.00055 36.7 21.6 188 66-262 89-285 (341)
130 3o2t_A Symplekin; heat repeat, 89.7 21 0.00071 37.0 26.8 172 139-330 59-271 (386)
131 3ldz_A STAM-1, signal transduc 89.4 2.5 8.6E-05 36.9 10.1 101 290-399 17-118 (140)
132 1lrv_A LRV, leucine-rich repea 88.9 0.14 4.9E-06 49.9 1.9 185 63-391 58-242 (244)
133 1lsh_A Lipovitellin (LV-1N, LV 88.9 15 0.00052 44.5 20.0 173 56-262 393-578 (1056)
134 1mhq_A ADP-ribosylation factor 86.8 8.2 0.00028 33.9 11.7 78 322-399 37-120 (148)
135 2jak_A Serine/threonine-protei 86.1 34 0.0012 35.4 17.5 200 293-502 140-345 (392)
136 1juq_A ADP-ribosylation factor 86.0 7.6 0.00026 35.1 11.4 78 322-399 49-132 (171)
137 1ho8_A Vacuolar ATP synthase s 85.6 41 0.0014 35.8 24.0 60 335-395 417-476 (480)
138 3g2s_A C-terminal fragment of 85.6 6.1 0.00021 34.8 10.2 78 322-399 47-130 (149)
139 2jak_A Serine/threonine-protei 85.3 22 0.00075 36.8 15.7 114 95-210 250-364 (392)
140 3s4w_B Protein FACD2, fanconi 85.1 78 0.0027 38.6 24.2 356 102-485 156-552 (1323)
141 3zyq_A Hepatocyte growth facto 84.1 6.8 0.00023 37.5 10.7 79 322-400 44-123 (226)
142 1dvp_A HRS, hepatocyte growth 83.1 7.6 0.00026 37.0 10.7 79 321-399 40-119 (220)
143 2fv2_A RCD1 required for cell 82.4 36 0.0012 32.7 15.3 211 19-261 2-225 (268)
144 3dad_A FH1/FH2 domain-containi 81.5 44 0.0015 33.7 15.5 144 293-440 129-289 (339)
145 3ldz_A STAM-1, signal transduc 80.9 27 0.00092 30.3 13.2 90 406-499 40-131 (140)
146 1elk_A Target of MYB1; superhe 80.2 14 0.00049 32.8 10.6 77 322-398 52-133 (157)
147 1x5b_A Signal transducing adap 79.6 16 0.00053 32.8 10.7 96 116-218 31-129 (163)
148 3dad_A FH1/FH2 domain-containi 78.6 58 0.002 32.8 15.4 111 327-442 122-236 (339)
149 1vdy_A Hypothetical protein (R 77.4 13 0.00045 32.1 9.0 94 715-808 30-128 (140)
150 2b6c_A Hypothetical protein EF 76.1 17 0.00057 34.6 10.6 130 290-442 63-193 (220)
151 1mhq_A ADP-ribosylation factor 75.5 33 0.0011 30.1 11.4 76 142-218 37-120 (148)
152 3zyq_A Hepatocyte growth facto 75.4 21 0.00071 34.1 10.9 96 117-219 25-123 (226)
153 1dvp_A HRS, hepatocyte growth 74.5 40 0.0014 31.9 12.8 95 117-218 22-119 (220)
154 1vdy_A Hypothetical protein (R 74.3 28 0.00096 30.0 10.2 75 320-396 46-131 (140)
155 3g2s_A C-terminal fragment of 74.2 37 0.0013 29.7 11.3 76 142-218 47-130 (149)
156 1juq_A ADP-ribosylation factor 73.5 46 0.0016 30.0 12.1 95 117-218 30-132 (171)
157 3rru_A TOM1L1 protein; structu 70.1 27 0.00093 30.7 9.5 79 322-400 52-135 (152)
158 4flb_A Regulation of nuclear P 67.1 26 0.00088 30.0 8.8 86 321-417 6-91 (132)
159 2fv2_A RCD1 required for cell 63.8 8.3 0.00028 37.0 5.1 98 707-810 116-224 (268)
160 1elk_A Target of MYB1; superhe 62.4 78 0.0027 27.9 11.1 79 406-485 51-133 (157)
161 3jxy_A Alkylpurine DNA glycosy 60.0 1.2E+02 0.0041 28.8 14.0 153 33-212 40-194 (232)
162 1sz9_A PCF11 protein; RNA poly 54.8 65 0.0022 28.0 9.0 90 331-431 18-108 (144)
163 3ebb_A Phospholipase A2-activa 53.8 1.2E+02 0.004 30.4 11.9 115 323-438 147-264 (304)
164 3jxy_A Alkylpurine DNA glycosy 49.8 89 0.0031 29.8 10.1 98 334-447 107-205 (232)
165 4fu3_A Regulation of nuclear P 47.1 61 0.0021 27.7 7.7 79 365-454 7-88 (135)
166 3ebb_A Phospholipase A2-activa 44.4 1.7E+02 0.0057 29.2 11.3 100 296-395 162-263 (304)
167 2b6c_A Hypothetical protein EF 41.1 2.3E+02 0.0079 26.5 14.0 153 33-212 34-187 (220)
168 2km4_A Regulator of TY1 transp 39.7 1.8E+02 0.0062 25.0 9.9 69 15-85 1-69 (142)
169 3rru_A TOM1L1 protein; structu 39.5 1.2E+02 0.0041 26.6 8.3 96 117-219 33-135 (152)
170 1t06_A Hypothetical protein; s 36.1 41 0.0014 32.2 5.2 35 319-353 147-181 (235)
171 3d9j_A RNA-binding protein 16; 35.3 2.2E+02 0.0075 24.6 10.4 66 371-442 11-76 (145)
172 1h2v_C 80 kDa nuclear CAP bind 33.2 2.9E+02 0.01 31.7 12.5 91 405-502 85-182 (771)
173 3d9j_A RNA-binding protein 16; 30.3 2.7E+02 0.0091 24.1 11.1 76 706-786 55-137 (145)
174 3qml_C Protein SLS1, nucleotid 29.1 3.6E+02 0.012 26.7 10.4 74 140-215 19-100 (315)
175 4fu3_A Regulation of nuclear P 28.5 2.7E+02 0.0091 23.5 10.5 105 143-257 7-113 (135)
176 1zl8_A LIN-7; heterodimer, alp 27.5 97 0.0033 20.9 4.1 31 887-927 9-39 (53)
177 3pst_A Protein DOA1; protein d 25.6 1.3E+02 0.0045 31.4 7.1 99 66-172 273-389 (425)
178 3eg5_B Protein diaphanous homo 24.2 6E+02 0.021 26.1 13.5 155 286-441 71-250 (383)
179 3l3f_X Protein DOA1, DOA1/UFD3 24.2 1E+02 0.0036 31.5 5.9 99 66-172 210-326 (362)
180 3gae_A Protein DOA1; UFD3, CDC 23.6 1.6E+02 0.0054 28.4 7.0 99 66-172 101-217 (253)
181 3dwl_G Actin-related protein 2 23.3 2.7E+02 0.0091 24.2 7.3 42 884-925 70-111 (152)
182 4f52_E Glomulin; cullin-ring E 23.1 4.2E+02 0.014 29.3 11.1 117 21-171 365-484 (596)
183 1k8k_G P16, ARP2/3 complex 16 23.1 3.1E+02 0.011 23.8 7.7 43 883-925 68-110 (151)
184 3ut4_A CTHE_2751, putative unc 22.7 3.5E+02 0.012 22.9 10.3 87 289-393 38-128 (134)
185 1sz9_A PCF11 protein; RNA poly 21.9 3.8E+02 0.013 23.0 11.1 97 320-418 40-136 (144)
186 2km4_A Regulator of TY1 transp 20.7 2.7E+02 0.0091 23.9 7.2 65 324-398 7-72 (142)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.2e-67 Score=635.14 Aligned_cols=770 Identities=15% Similarity=0.212 Sum_probs=637.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHh--cCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLS--SSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~--~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
.+++.++|+.++|||+++|++||++|+++++ +|+ |...|..++. ++.++.+|++|+++|||.+.++ |..+
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~------w~~~ 83 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH------FQNF 83 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS------GGGC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc------cCCC
Confidence 3578888888899999999999999999987 687 6789999988 4788999999999999999998 9999
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400 97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE 176 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 176 (927)
+++.+..||+.+++.|.++ ++.||++++.+++.|++.+++ +.||++++.+.++++++++.+|++++.+|+.+++..++
T Consensus 84 ~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 84 PNGVTDFIKSECLNNIGDS-SPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp CHHHHHHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999865 889999999999999999876 89999999999999999999999999999999998876
Q ss_pred HHHH-----hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHH
Q 002400 177 VLIA-----HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEA 251 (927)
Q Consensus 177 ~l~~-----~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a 251 (927)
.+.. .++.+++.+.++++++++.||..|++++..++ ...+ ..+...++.+++.+...+.+++++++..+
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~-~~~~-----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a 235 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI-ISRT-----QALMLHIDSFIENLFALAGDEEPEVRKNV 235 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT-TTTC-----HHHHTSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccc-----HHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 6543 37889999999999999999999999998887 4321 23555667777777777778888999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc--------------------------Cc-------hhhhh-------
Q 002400 252 LELLIELAATEPRFLRKQLVDVVGSMLQVAEAE--------------------------AV-------FPGFL------- 291 (927)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~--------------------------~~-------i~~~l------- 291 (927)
++.+..+++..+..+.++++.+++.++..+.++ ++ +.+.+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 999999998888888888888888887765432 11 11112
Q ss_pred ----CC-----------cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhch
Q 002400 292 ----AA-----------PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGP 356 (927)
Q Consensus 292 ----~~-----------~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 356 (927)
.+ .+|.+|.+|..+++.++...++ ..++.+++.+...++|++|.+|.+|++++|.+++..+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 23 5799999999999999988765 56778899999999999999999999999999998776
Q ss_pred hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 357 ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 357 ~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
.+ ..+++.++|.++..+.| +++.||..++++++.+++..+.....+|+..+++.++..+.+.++.+|..++.+++.++
T Consensus 393 ~~-~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 393 GM-IPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HH-GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 55 57899999999999999 99999999999999999876555567899999999999999999999999999999999
Q ss_pred HHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchh-hhhHHHHHHHHHHHhccCCCCCCcch
Q 002400 437 DSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKF-RDDAKQVMEVLMSLQGSQMEADDPTT 515 (927)
Q Consensus 437 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~ 515 (927)
...+..+.||++.+++.|...+.... ......++++++.++..+|+... .+|.+.+++.+++.+....+.+...
T Consensus 471 ~~~~~~l~~~l~~ll~~L~~~l~~~~----~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~- 545 (852)
T 4fdd_A 471 EEACTELVPYLAYILDTLVFAFSKYQ----HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL- 545 (852)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-
T ss_pred HHhhHhhHhHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-
Confidence 99999999999999999999987532 22334578999999999884322 3588888888886544322222334
Q ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCC--c-cccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhH
Q 002400 516 SYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPD--V-IITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEK 592 (927)
Q Consensus 516 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 592 (927)
..++++++.++..+|..|.||++.+++.+++.+..... . ...+.+. . ++++. +-+
T Consensus 546 ~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~---~--~~~d~-----------------~~~ 603 (852)
T 4fdd_A 546 FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ---Y--EAPDK-----------------DFM 603 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT---S--CCCCT-----------------HHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---c--CCCcc-----------------hHH
Confidence 47899999999999999999999999988877643100 0 0000000 0 00011 114
Q ss_pred HHHHHHHHHHHHHhcccccccH--HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002400 593 ATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTD 670 (927)
Q Consensus 593 ~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (927)
..++++++.++..+|.+|.||+ ..+++.+..++.+
T Consensus 604 ~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~------------------------------------------- 640 (852)
T 4fdd_A 604 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD------------------------------------------- 640 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC-------------------------------------------
Confidence 5688889999999988887776 3444333333222
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhH
Q 002400 671 YIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDV 750 (927)
Q Consensus 671 ~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v 750 (927)
.++.+|+.++.++++++..+|..+.+|++.++|.+.+.+.++++.+
T Consensus 641 ----------------------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v 686 (852)
T 4fdd_A 641 ----------------------------------KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 686 (852)
T ss_dssp ----------------------------------SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred ----------------------------------CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence 3367888888888999999999999999999999999998889999
Q ss_pred HhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhc
Q 002400 751 RQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSC 828 (927)
Q Consensus 751 r~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~ 828 (927)
|.+|+|++|.++.+.++.+.||+..+++.|.+++.+++. ...+++|++.++||++..+|+.+ +++++++.|++.
T Consensus 687 ~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~----~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~ 762 (852)
T 4fdd_A 687 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS 762 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCC----CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHH
Confidence 999999999999999989999999999999999987642 46799999999999999988866 499999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHH
Q 002400 829 LPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLAS 908 (927)
Q Consensus 829 Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 908 (927)
||..+|.+|+..++++||.++..+|+.+.+ ++..++..+++ +. ..+++++..+.+++..+++.+|++.|++
T Consensus 763 l~~~~d~~e~~~a~~~l~~li~~~p~~~~~----~~~~~~~~~~~----~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 833 (852)
T 4fdd_A 763 LRNIRDNEEKDSAFRGICTMISVNPSGVIQ----DFIFFCDAVAS----WI-NPKDDLRDMFCKILHGFKNQVGDENWRR 833 (852)
T ss_dssp HHTSCSSHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHT----CS-SCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHHhChHhHHH----HHHHHHHHHHh----cC-CCCHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 999999999999999999999988776544 34444444443 43 4578999999999999999999888999
Q ss_pred HHhcCCHHHHHHHHHhhc
Q 002400 909 TWSSLQPQQQLALQSILS 926 (927)
Q Consensus 909 ~~~~l~~~~~~~l~~~~~ 926 (927)
+++++|++.|++|++.|+
T Consensus 834 ~~~~~~~~~~~~l~~~~~ 851 (852)
T 4fdd_A 834 FSDQFPLPLKERLAAFYG 851 (852)
T ss_dssp HGGGCCHHHHHHHHHTSC
T ss_pred HHHhCCHHHHHHHHHHhC
Confidence 999999999999999875
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5.9e-51 Score=499.87 Aligned_cols=792 Identities=15% Similarity=0.154 Sum_probs=630.5
Q ss_pred CCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcc-----c
Q 002400 17 PNPAHFETLISNL-MSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDS-----T 89 (927)
Q Consensus 17 ~~~~~l~~~L~~~-~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~-----~ 89 (927)
||++++.++|+++ +|||+++|++||++|++++++++..|...|++++.+ +.++++|++|+++||+.+.++.. .
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 6789999999999 999999999999999999885555688999999987 46899999999999999976510 1
Q ss_pred cccccc-cCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC-ChHHHHHHHHHH
Q 002400 90 SFIFTR-LAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF-NDKIQESALLIL 167 (927)
Q Consensus 90 ~~~w~~-l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~-~~~~r~~al~~l 167 (927)
...|.. ++++.+..||+.+++.|.++ ++.+|++++.+++.|++.++|.+.||++++.+++.++++ ++.+|+.++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~-~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 234676 99999999999999999986 788999999999999999998679999999999999988 999999999999
Q ss_pred HHhhhhhHHH---HHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhc
Q 002400 168 SRMSQFVSEV---LIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNK 242 (927)
Q Consensus 168 ~~l~~~~~~~---l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~ 242 (927)
+.+++.++.. +.++.+.+++.+..++.++ +..||..|++++..++ ..+....... ...+.+++.+...+.+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~-~~~~~~~~~~---~~~~~ll~~l~~~~~~ 235 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL-IFIKNNMERE---GERNYLMQVVCEATQA 235 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG-GGCHHHHTSH---HHHHHHHHHHHHHHTC
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH-HHHHHHccCh---hHHHHHHHHHHHHhcC
Confidence 9999876554 5678999999999999987 8999999999999987 5442110000 1124456666667777
Q ss_pred CChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhch-------
Q 002400 243 GNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCS------- 314 (927)
Q Consensus 243 ~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~------- 314 (927)
++++++..+++.+..+++..+..+.+++. .+++.++ ..+.+.+..+|..++..++.+++...
T Consensus 236 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~----------~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTI----------ATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHH----------HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 88999999999999999887778888888 8888766 44556788999999999999887632
Q ss_pred ----------HHHHhhHHHHHHHHHhccCC-------CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCC
Q 002400 315 ----------KVMIKNLDQVVSMVLNSFQD-------PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDF 377 (927)
Q Consensus 315 ----------~~~~~~l~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 377 (927)
....+++..++|.++..+.+ .++.+|.++..+++.++..++. ..++.+++.+.+.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~~- 380 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNITA- 380 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC-
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcCC-
Confidence 13345678889998888864 4578999999999999988764 3466788888899988
Q ss_pred CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh--HHhHHHHHHHHH
Q 002400 378 QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF--QKYYDAVMPYLK 455 (927)
Q Consensus 378 ~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~--~~~~~~i~~~L~ 455 (927)
+++.+|..|+.+++.+++.++++.+.+|++.+++.++..+++.++.+|..++++++.++...+..+ .+|++.++|.+.
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~ 460 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL 460 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 889999999999999998876455678999999999999999999999999999999999888765 578999999999
Q ss_pred HHHhcccCcchhhHHHHHHHHHHHHHHhhC---cchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccc
Q 002400 456 AILVNANDKSNRMLRAKSMECISLVGMAVG---KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQE 532 (927)
Q Consensus 456 ~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (927)
..+.+ + ..+|..+..+++.++..++ ++.+.+|.+.+++.+....... +.+..++..++.+++.++...+..
T Consensus 461 ~~l~~----~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 461 IGLQD----H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHTS----C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHhcc----C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcchh
Confidence 98854 2 6788899999999998876 3678899999999988865431 122357889999999999999999
Q ss_pred cccchhhhHHHHHHHcccCCCcc--ccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccc
Q 002400 533 FIPYMSVVMPPLLQSAQLKPDVI--ITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF 610 (927)
Q Consensus 533 ~~~~l~~i~~~ll~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~ 610 (927)
+.+|++.++|.+++.+....... .. .+++ +....+-+..++.+++.++..++..+
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~~i~----------~~~~-------------~~~~~~~~~~~~~~l~~l~~~~~~~~ 591 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDENQL----------TLED-------------AQSLQELQSNILTVLAAVIRKSPSSV 591 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCGGGC----------CHHH-------------HHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccC----------Chhh-------------HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999998885321000 00 0000 00111235678899999999999999
Q ss_pred cccHHHHHHHHhhhhcccCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHH
Q 002400 611 FPWIDQVAPTLVPLLKFYFHE-EVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDIC 689 (927)
Q Consensus 611 ~~~~~~~~~~l~~~l~~~~~~-~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~ 689 (927)
.||++.+++.+...+.+. +. .+|..+..+++.++...+. .+..++..++|.+++.+..+
T Consensus 592 ~~~~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~-------------~~~~~l~~i~~~l~~~l~~~------ 651 (861)
T 2bpt_A 592 EPVADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGK-------------GFEKYLETFSPYLLKALNQV------ 651 (861)
T ss_dssp GGGHHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHhccc------
Confidence 999999999999998874 45 8999999999999876521 25567888899888888432
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCC--hhHHhhHhHHHHHHHhhcCC
Q 002400 690 ASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKH--PDVRQAAVYGIGVCAEFGGS 767 (927)
Q Consensus 690 ~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~--~~vr~~a~~~lg~l~~~~~~ 767 (927)
++..|..++.++++++..+|..+.+|++.+++.+++.+.+++ +.+|..++.++|.++...|+
T Consensus 652 ----------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 652 ----------------DSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp ----------------TSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred ----------------cHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 367899999999999999999999999999999999998764 89999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCch-----hhhHHHHHHHHHHHHHhhcCCC---C--CHhhHHHHHHhcCCCC--C-c
Q 002400 768 VFKPLVGEALSRLDFVIRHPNALHSD-----NVMAYDNAVSALGKICQFHRDS---I--DAAQVVPAWLSCLPLK--G-D 834 (927)
Q Consensus 768 ~~~~~~~~il~~L~~~l~~~~~~~~~-----~~~~~~na~~al~~l~~~~~~~---~--~~~~~l~~~l~~Lp~~--~-d 834 (927)
.+.||++.+++.+...+.......++ ...+|..++.+++.++...+.. + .++.+++.+...+... + +
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~ 795 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 99999999999999988642111111 1467889999999999765421 2 3566666665655321 1 5
Q ss_pred HHHHHHHHHHHHHHHhcc-CCcccCCCCCChh-HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Q 002400 835 LIEAKVVHAQLCSMVERS-DGEILGPNHQYLP-KIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQ 898 (927)
Q Consensus 835 ~~e~~~~~~~l~~l~~~~-~~~~~~~~~~~~~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 898 (927)
.+-+..++.++..++... ++.+.. +.+ +++..+...+.... ..+..++....=.++.++
T Consensus 796 ~~vr~~a~~~l~~l~~~~~g~~~~~----~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAAMFPDGSIKQ----FYGQDWVIDYIKRTRSGQ-LFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTGG----GTTCHHHHHHHHHHHHCS-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHH----HHhcHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHH
Confidence 667889999999999877 554433 466 78888888776321 234455555544455444
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.2e-50 Score=498.08 Aligned_cols=746 Identities=17% Similarity=0.216 Sum_probs=591.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcc-----cccccc
Q 002400 21 HFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDS-----TSFIFT 94 (927)
Q Consensus 21 ~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~-----~~~~w~ 94 (927)
++.++|+++++||+++|++|+++|+++.+.++..|...|++++.+ +.++.+|++|+++||+.+..... ....|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 578999999999999999999999999875455688999999987 36899999999999998853311 134599
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC--ChHHHHHHHHHHHHhhh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF--NDKIQESALLILSRMSQ 172 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~--~~~~r~~al~~l~~l~~ 172 (927)
.++++.+..||+.+++.|.++ ++.+ +.++.+++.|++.++|.+.||++++.+.++++++ ++.+|+.++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTC-CSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999886 6667 9999999999999988789999999999999988 89999999999999998
Q ss_pred hh-HHHHHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHH
Q 002400 173 FV-SEVLIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQ 249 (927)
Q Consensus 173 ~~-~~~l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~ 249 (927)
.+ ++.+..+.+.+++.+.+++.++ +..+|..|++++..++ ..++....... ..+.+++.+...+.+.+++++.
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~-~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~vr~ 235 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-EFTKANFDKES---ERHFIMQVVCEATQCPDTRVRV 235 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG-GGCHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHH
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH-HHHHHHHHhHH---HHHHHHHHHHHHcCCCCHHHHH
Confidence 76 5667788999999999999987 6899999999999988 54421100001 1122444555555556677777
Q ss_pred HHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhcc--------------------------------------------
Q 002400 250 EALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAE-------------------------------------------- 284 (927)
Q Consensus 250 ~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~-------------------------------------------- 284 (927)
.+++++..+++..++.+.+++. .+++.++....++
T Consensus 236 ~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (876)
T 1qgr_A 236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (876)
T ss_dssp HHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHH
Confidence 7777777777666666666665 5555554332111
Q ss_pred --------CchhhhhC-------CcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002400 285 --------AVFPGFLA-------APEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQ 349 (927)
Q Consensus 285 --------~~i~~~l~-------~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 349 (927)
+.+-+.+. +++|..|.+|..+++.++..+++ ..++.+++.+...+.|++|.+|.+|++++|.
T Consensus 316 ~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~ 392 (876)
T 1qgr_A 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392 (876)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 00001111 45799999999999999998775 5678899999999999999999999999999
Q ss_pred hHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc-ccCchHHHHHHHHHHhcCCChhHHHHH
Q 002400 350 LSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI-LTPYLDGIVSKLLVLLQNGKQMVQEGA 428 (927)
Q Consensus 350 ~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~l~~~~~~v~~~a 428 (927)
+++.++++....++..++|.++..+.| +++.||..|+++++++++.++... ..+|++.+++.++..+++. +.+|..+
T Consensus 393 i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a 470 (876)
T 1qgr_A 393 ILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNV 470 (876)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 999877543357889999999999999 899999999999999999876543 4689999999999999885 8899999
Q ss_pred HHHHHHHHHHhh--------------hhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHH
Q 002400 429 LTALASVADSSQ--------------GQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 494 (927)
Q Consensus 429 ~~al~~l~~~~~--------------~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~ 494 (927)
+.+++.++...+ ..+.||++.++|.|...+..... +...+|..++++++.++..+|. .+.+++.
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~-~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~ 548 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG-HQNNLRSSAYESLMEIVKNSAK-DCYPAVQ 548 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS-CSTTHHHHHHHHHHHHHHTCCS-TTHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc-chhhHHHHHHHHHHHHHHHCch-hhHHHHH
Confidence 999999998876 24889999999999999875322 3467899999999999999994 6778888
Q ss_pred HHHHHHHHHhccC-------CCCCC-----cchHHHHHHHHHHHHHhc-cccccchhhhHHHHHHHcccCCCccccCCCC
Q 002400 495 QVMEVLMSLQGSQ-------MEADD-----PTTSYMLQAWARLCKCLG-QEFIPYMSVVMPPLLQSAQLKPDVIITSADS 561 (927)
Q Consensus 495 ~i~~~l~~~~~~~-------~~~~~-----~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~ 561 (927)
.+++.++...... .+.++ .++..++.+++.++..+| .++.||++.++|.+++.++...+
T Consensus 549 ~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------- 620 (876)
T 1qgr_A 549 KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG-------- 620 (876)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC--------
Confidence 8888877643321 11222 246778899999999999 99999999999999999954210
Q ss_pred CCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHH
Q 002400 562 DVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAM 641 (927)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l 641 (927)
+ . ..+..++.+++.++..++..|.||++.+++.+.+.+.+..++.+|..|+.++
T Consensus 621 ------------------~-----~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l 674 (876)
T 1qgr_A 621 ------------------S-----G---GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674 (876)
T ss_dssp ------------------C-----C---HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred ------------------C-----C---CccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 0 0 1145688999999999999999999999999999998755789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Q 002400 642 PELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVM 721 (927)
Q Consensus 642 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~ 721 (927)
+.+++.++. .+..++..+++.+++.+..++ .+...|..++.++|+++
T Consensus 675 ~~l~~~~~~-------------~~~~~~~~i~~~l~~~l~~~~--------------------~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 675 GDLCRALQS-------------NIIPFCDEVMQLLLENLGNEN--------------------VHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHHHHHHGG-------------GGHHHHHHHHHHHHHHHTCTT--------------------SCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------hhhhhHHHHHHHHHHHhCCcc--------------------ccHHhhHHHHHHHHHHH
Confidence 999987521 256678888888888886521 24678999999999999
Q ss_pred HHhhhhhhhhHHhHHHHHHHHccCCC-----------hhHHhhHhHHHHHHHhhcC----------CCcHHHHHHHHHHH
Q 002400 722 EHCREAALKYYDTYLPFLLEACNDKH-----------PDVRQAAVYGIGVCAEFGG----------SVFKPLVGEALSRL 780 (927)
Q Consensus 722 ~~~~~~~~~~~~~ll~~l~~~l~d~~-----------~~vr~~a~~~lg~l~~~~~----------~~~~~~~~~il~~L 780 (927)
..+|..+.+|++.++|.+.+.+.++. ..+|..+..+++.++...+ ..+.||++.+++.+
T Consensus 722 ~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 801 (876)
T 1qgr_A 722 LAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFI 801 (876)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999998886442 2789999999988887643 36789999999888
Q ss_pred HHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCC-CC-C--HhhHHHHHHh-cCCCCCcHHHHHHHHHHHHHHHhc
Q 002400 781 DFVIRHPNALHSDNVMAYDNAVSALGKICQFHRD-SI-D--AAQVVPAWLS-CLPLKGDLIEAKVVHAQLCSMVER 851 (927)
Q Consensus 781 ~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~-~~-~--~~~~l~~~l~-~Lp~~~d~~e~~~~~~~l~~l~~~ 851 (927)
.....++. + +..+|..|+.++|.++...+. .+ + .+.+++.++. .+.. .+.+.+..+..++..+.+.
T Consensus 802 ~~~~~~~~-~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~-~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 802 DHIAGDED-H---TDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS-KTNKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHTCSC-C---CHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-C---CHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHHh
Confidence 77765431 0 356899999999999998866 44 2 3567888888 6643 4556677777777766643
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.3e-44 Score=457.41 Aligned_cols=848 Identities=11% Similarity=0.118 Sum_probs=594.5
Q ss_pred cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhC--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccC
Q 002400 15 LGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSH--------PDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRD 86 (927)
Q Consensus 15 ~~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~--------p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~ 86 (927)
|+.++.++.++|+.+.|||++.|++|+..|.+.-+.. +..++..+++.+. +.++.+|+.|+..|.+.+..
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~- 78 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK- 78 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT-
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh-
Confidence 5667789999999999999999999998887654321 2245667777765 78999999999999887643
Q ss_pred ccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC--------CccchHHHHHHHhc-CCCh
Q 002400 87 DSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG--------DWPELIPFIFQCLV-TFND 157 (927)
Q Consensus 87 ~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~--------~w~~ll~~l~~~l~-s~~~ 157 (927)
+++.....++..++..+.++ ++.+|..++.+++.++....+.. .|++++|.++..+. ++++
T Consensus 79 ---------~~~~~~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 79 ---------VKEYQVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp ---------SCHHHHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH
T ss_pred ---------CCHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch
Confidence 45577888999999999876 77899999999999998766531 59999999999998 5889
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHH
Q 002400 158 KIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLT 237 (927)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~ 237 (927)
.+|..++.++..+++..+..+.++.+.+++.+...+.+++..||..|+.+++.++ ...++ ..+..++|.+++.+.
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~-~~~~~----~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV-MSCGN----IVFVDLIEHLLSELS 223 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT-TTC--------CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HhcCH----HHHHHHHHHHHHHhc
Confidence 9999999999999998877788899999999999999999999999999999998 65532 224445555555543
Q ss_pred HHHhcCChhHHHHHHHHHHHHHccCcH-----------------------------------------HHHHHHHHHHHH
Q 002400 238 EALNKGNESSAQEALELLIELAATEPR-----------------------------------------FLRKQLVDVVGS 276 (927)
Q Consensus 238 ~~l~~~~~~~~~~a~~~l~~l~~~~~~-----------------------------------------~~~~~l~~ll~~ 276 (927)
. ..++..+..++++|..++...++ .+.++++.++|.
T Consensus 224 ~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ 300 (1230)
T 1u6g_C 224 K---NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINI 300 (1230)
T ss_dssp H---TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHH
T ss_pred c---CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHH
Confidence 3 11122333344444444433333 334445555555
Q ss_pred HHHHhhccCc------------hh-------------hh--hCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHH
Q 002400 277 MLQVAEAEAV------------FP-------------GF--LAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVL 329 (927)
Q Consensus 277 ll~~~~~~~~------------i~-------------~~--l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~ 329 (927)
+++.+..++- +. .+ -.+..|++|.+|..+++.++...++.+.++++.++|.+.
T Consensus 301 ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~ 380 (1230)
T 1u6g_C 301 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380 (1230)
T ss_dssp HTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH
T ss_pred HHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 4433321000 00 00 012359999999999999998776667788899999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhHhhhch------------------hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHH
Q 002400 330 NSFQDPHPRVRWAAINAIGQLSTDLGP------------------ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVL 391 (927)
Q Consensus 330 ~~l~d~~~~vr~~a~~~l~~~~~~~~~------------------~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~ 391 (927)
..+.|+++.||.+++.+++.+....+. .....+++.++|.+.+.+.+ +++.+|..++.+|+
T Consensus 381 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~vr~~~~~~L~ 459 (1230)
T 1u6g_C 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTRQCCFNMLT 459 (1230)
T ss_dssp STTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence 999999999999999999988875532 12246788888988888999 89999999999999
Q ss_pred HhHhcCCCccccCchHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcccCcchhh
Q 002400 392 NFSENCTPDILTPYLDGIVSKLLVLLQNGKQ--MVQEGALTALASVADSSQGQ-FQKYYDAVMPYLKAILVNANDKSNRM 468 (927)
Q Consensus 392 ~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~--~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~L~~~l~~~~~~~~~~ 468 (927)
.+++.++ ..+.+|++.+++.++..+++... .++..++.+++.+....+.. |.||++.++|.+...+.+ ....
T Consensus 460 ~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d----~~~~ 534 (1230)
T 1u6g_C 460 ELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD----PFYK 534 (1230)
T ss_dssp HHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC----SSHH
T ss_pred HHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc----cchH
Confidence 9999875 45678999999999999998764 88999999999998766655 899999999999998754 3456
Q ss_pred HHHHHHHHHHHHHHhhCc------chhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHH
Q 002400 469 LRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMP 542 (927)
Q Consensus 469 lr~~a~~~l~~l~~~~~~------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~ 542 (927)
+|..++.+++.++..+|+ ..+.||.+.+++.++..... .+.+..+|..++.+++.++...|+.+.+|++.+++
T Consensus 535 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~-~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~ 613 (1230)
T 1u6g_C 535 ITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA-ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQ 613 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC-SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHH
Confidence 788899999999999885 37889999999998875432 12334589999999999999999999999999999
Q ss_pred HHHHHcccCCC-------------------cc-------------ccCCCC-------------------CCCC------
Q 002400 543 PLLQSAQLKPD-------------------VI-------------ITSADS-------------------DVDI------ 565 (927)
Q Consensus 543 ~ll~~l~~~~~-------------------~~-------------~~~~~~-------------------~~~~------ 565 (927)
.+.+.+..... .. ..+++. ....
T Consensus 614 ~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~ 693 (1230)
T 1u6g_C 614 IFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAV 693 (1230)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 98887753210 00 000000 0000
Q ss_pred ------CCCcchhh---hh--------ccCCcee-eechhhHHh----------HHHHHHHHHHHHHHh-----------
Q 002400 566 ------DDEDESIQ---TI--------TLGDKRI-GIKTSVLEE----------KATACNMLCCYADEL----------- 606 (927)
Q Consensus 566 ------~~~~~~~~---~~--------~~~~~~~-~~~~~~~~~----------k~~a~~~l~~l~~~~----------- 606 (927)
--+++|++ .. ....... ......+.. ...+.+.+..+...+
T Consensus 694 l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 773 (1230)
T 1u6g_C 694 LDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYM 773 (1230)
T ss_dssp HTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHH
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 00011111 00 0000000 001111110 011111111111110
Q ss_pred -------------------------------------cc-------------------------------------cccc
Q 002400 607 -------------------------------------KE-------------------------------------GFFP 612 (927)
Q Consensus 607 -------------------------------------~~-------------------------------------~~~~ 612 (927)
+. .+.+
T Consensus 774 ~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~ 853 (1230)
T 1u6g_C 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG 853 (1230)
T ss_dssp HHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcc
Confidence 00 0000
Q ss_pred cHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHH--------HHHHhcCC-------------CCCCHHHHHHHHHH
Q 002400 613 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAK--------LAVEKGQS-------------QGRNESYVKQLTDY 671 (927)
Q Consensus 613 ~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~ 671 (927)
.+++.+.+.+.+.++ ++.||.+|+.+++.++.... .....+.. ..........+...
T Consensus 854 -~~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~ 931 (1230)
T 1u6g_C 854 -QLELKSVILEAFSSP-SEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931 (1230)
T ss_dssp -CTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHH
T ss_pred -cccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHH
Confidence 022344445555553 67777777777777543210 00110000 00000112334444
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhhc-------------CCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHH
Q 002400 672 IIPALVEALHKEPEIDICASMLDALNESIQ-------------GKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPF 738 (927)
Q Consensus 672 il~~ll~~l~~e~d~~v~~~~l~~l~~~~~-------------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~ 738 (927)
+++.|++.+.+ .+..++..+.+++..++. ..+.++..|..++.+++.++...+..+.+|++.+++.
T Consensus 932 i~~~L~~~~~~-~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 1010 (1230)
T 1u6g_C 932 IWALLLKHCEC-AEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGD 1010 (1230)
T ss_dssp HHHHHTTCCCC-SSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTT
T ss_pred HHHHHHHHhcC-cchhhHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHH
Confidence 55555544432 233344444444444432 4566777888888888888888887778899999999
Q ss_pred HHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCC------------CCchhhhHHHHHHHHHH
Q 002400 739 LLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNA------------LHSDNVMAYDNAVSALG 806 (927)
Q Consensus 739 l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~------------~~~~~~~~~~na~~al~ 806 (927)
++..++|++++||++|+++++.++.+.+..+.+++..+++.|.+.+..++. +.+++..+|++|..|+.
T Consensus 1011 ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~ 1090 (1230)
T 1u6g_C 1011 FLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMY 1090 (1230)
T ss_dssp THHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987753321 22456789999999999
Q ss_pred HHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCC------
Q 002400 807 KICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKD------ 880 (927)
Q Consensus 807 ~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~------ 880 (927)
+++.++.+.+++.++++.|++.||. |.+.+.-++..+.+|+..+++.+.+ ++++++..+...|....+
T Consensus 1091 ~ll~~~~~~i~~~~~~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~q 1164 (1230)
T 1u6g_C 1091 TLLDSCLDRLDIFEFLNHVEDGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQ----RLDRLVEPLRATCTTKVKANSVKQ 1164 (1230)
T ss_dssp HHHHSSCSSSCHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHSCCHHHHT----TTTTTHHHHHHHHHCCCCTTSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcccCc--hHHHHHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHhhccccchhhh
Confidence 9999998888999999999999998 4678899999999999988887876 699999999999864321
Q ss_pred --CCcHHHHHHHHHHHHHHH
Q 002400 881 --LVTEQTASRMINLLRQLQ 898 (927)
Q Consensus 881 --~~~~~~~~~~~~~l~~~~ 898 (927)
...+|.+..+.+++..+.
T Consensus 1165 e~e~~~e~~r~~~r~~~~l~ 1184 (1230)
T 1u6g_C 1165 EFEKQDELKRSAMRAVAALL 1184 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 223566777777777766
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.6e-42 Score=423.03 Aligned_cols=729 Identities=13% Similarity=0.169 Sum_probs=487.0
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc-CCChhHHHHHHHHHHhhcccCcccccccc-
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFT- 94 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~- 94 (927)
.|.+++.++|++++|||+++| ||++|+++++ +|+ |...|++++.+ +.+.++|++|+++|||.+.++ |.
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~-~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~------w~~ 71 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLET-QDG-FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK------WVD 71 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STT-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH------SBC
T ss_pred CcHHHHHHHHHHhcCCCHHHH--HHHHHHHhhc-CCC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc------CCC
Confidence 467899999999999999988 9999999977 687 77899999977 568899999999999999998 97
Q ss_pred -----ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHH
Q 002400 95 -----RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSR 169 (927)
Q Consensus 95 -----~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~ 169 (927)
.++++.|..||+.+++.+.++ ++.||++++.+|+.|+++++| +.||++++.|+++++++++..+++++.++..
T Consensus 72 ~~~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 72 ENGNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp SSSCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 799999999999999999987 589999999999999999999 8999999999999999898999999999999
Q ss_pred hhhhhH---------HH----HHHhHHHHHHHHH---hhhCCCCH---------HHHHHHHHHHHHHHHhhCCCch-hHH
Q 002400 170 MSQFVS---------EV----LIAHGDTLHEVFS---KFLGSNNF---------DLRIAALEATVNFIMNCLPSLG-EKE 223 (927)
Q Consensus 170 l~~~~~---------~~----l~~~~~~l~~~l~---~~l~~~~~---------~vr~~a~~~l~~l~~~~~~~~~-~~~ 223 (927)
+++... .. +..+.+.+++++. ++++++.. +++..+++++..+. . .+-+. ...
T Consensus 150 i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~-~-~~~~~~~~~ 227 (960)
T 1wa5_C 150 IFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFN-C-QDIPEFFED 227 (960)
T ss_dssp HHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHH-S-SCCCHHHHH
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-h-ccchHHHHH
Confidence 998542 11 2233444444443 33555421 23334555555433 1 11110 001
Q ss_pred hHHhhHHHHHHHHH------------------------------------------------HH-HhcCC--------hh
Q 002400 224 RFLDLLPLMMRTLT------------------------------------------------EA-LNKGN--------ES 246 (927)
Q Consensus 224 ~~~~~~p~ll~~l~------------------------------------------------~~-l~~~~--------~~ 246 (927)
.+..+++.+++.+. .. +..-. +.
T Consensus 228 ~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (960)
T 1wa5_C 228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI 307 (960)
T ss_dssp THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHH
Confidence 11222222211110 00 00000 02
Q ss_pred HHHHHHHHHHHHHccCc--HHHH--HHHHHHH-HHHHHHhh-----------c-----------c---------------
Q 002400 247 SAQEALELLIELAATEP--RFLR--KQLVDVV-GSMLQVAE-----------A-----------E--------------- 284 (927)
Q Consensus 247 ~~~~a~~~l~~l~~~~~--~~~~--~~l~~ll-~~ll~~~~-----------~-----------~--------------- 284 (927)
.+..++++|..+++... ..++ +++..++ +.++..+. | +
T Consensus 308 ~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~ 387 (960)
T 1wa5_C 308 LVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE 387 (960)
T ss_dssp HHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHH
Confidence 23455566665554321 2222 4555555 33332210 0 0
Q ss_pred --------------CchhhhhC------CcchhHHHHHHHHHHHHhhh---chHHHHh-----hHHHH-HHHHHhccCCC
Q 002400 285 --------------AVFPGFLA------APEWQKHHAVLIALAQIAEG---CSKVMIK-----NLDQV-VSMVLNSFQDP 335 (927)
Q Consensus 285 --------------~~i~~~l~------~~~~~~r~aal~al~~i~~~---~~~~~~~-----~l~~l-~~~l~~~l~d~ 335 (927)
+++.+.++ +++|+.|+||++++|+++++ +...... .+..+ ...+++.++|+
T Consensus 388 l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~ 467 (960)
T 1wa5_C 388 LKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN 467 (960)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCS
T ss_pred HHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCC
Confidence 33444444 67899999999999999875 3211111 34443 34566667777
Q ss_pred ---CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC----------CCccc
Q 002400 336 ---HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC----------TPDIL 402 (927)
Q Consensus 336 ---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~----------~~~~~ 402 (927)
+|.||.+|+|++|++++++. ..++..+++.+++++.+ +++.||.+||++|.+|++.. ..+.+
T Consensus 468 ~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l 542 (960)
T 1wa5_C 468 NIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI 542 (960)
T ss_dssp SCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT
T ss_pred CCCCceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHHh
Confidence 99999999999999999874 35789999999999998 88999999999999999842 24568
Q ss_pred cCchHHHHHHHHHHhcCCC---h--hHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc-cCcchhhHHHHHHHH
Q 002400 403 TPYLDGIVSKLLVLLQNGK---Q--MVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNA-NDKSNRMLRAKSMEC 476 (927)
Q Consensus 403 ~~~l~~l~~~L~~~l~~~~---~--~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~~~~lr~~a~~~ 476 (927)
.||++.+++.|+.+++... . ...+.++.+|+.++...++.+.||++.+++.|...+... .+++++.++..+++|
T Consensus 543 ~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~ 622 (960)
T 1wa5_C 543 SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFES 622 (960)
T ss_dssp TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 8999999999999998752 2 245789999999999999999999999999999988764 344567788889999
Q ss_pred HHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHH--HHcccCCCc
Q 002400 477 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLL--QSAQLKPDV 554 (927)
Q Consensus 477 l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll--~~l~~~~~~ 554 (927)
++.++++.+++.+.++.+.+++.+..+..... ....++++..+..+.... ..+.+|+..++|.+. ..+... +
T Consensus 623 l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~- 696 (960)
T 1wa5_C 623 IGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK-G- 696 (960)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT-T-
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh---HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC-C-
Confidence 99999998888889999999998877554322 246788999998888877 889999999999887 444221 0
Q ss_pred cccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHH
Q 002400 555 IITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVR 634 (927)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR 634 (927)
.+ ...++.|..++...+..|..
T Consensus 697 ---------------------------------~~---~~~~~~L~~~~~~~~~~~~~---------------------- 718 (960)
T 1wa5_C 697 ---------------------------------NI---PAVTRLLKSFIKTDSSIFPD---------------------- 718 (960)
T ss_dssp ---------------------------------TH---HHHHHHHHHHHHHHGGGCSC----------------------
T ss_pred ---------------------------------Cc---hhHHHHHHHHHHhChHHHHH----------------------
Confidence 00 11222233332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 002400 635 KAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAI 714 (927)
Q Consensus 635 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~ 714 (927)
+ +.++..+-+.+.. .. .+..++
T Consensus 719 ------~----------------------------~~~l~~~~~~~~~----------------------~~--~~~~a~ 740 (960)
T 1wa5_C 719 ------L----------------------------VPVLGIFQRLIAS----------------------KA--YEVHGF 740 (960)
T ss_dssp ------S----------------------------HHHHHHHHHHHTC----------------------TT--THHHHH
T ss_pred ------H----------------------------HHHHHHHHHHhCC----------------------Cc--ccchHH
Confidence 0 0000000111111 11 237789
Q ss_pred HHHHHHHHHhhhh-hhhhHHhHHHHHHHHccCC-ChhHHhhHhHHHHHHHhhcCC-CcHHHHHHHHHHHHHhhcCCCCCC
Q 002400 715 CIFDDVMEHCREA-ALKYYDTYLPFLLEACNDK-HPDVRQAAVYGIGVCAEFGGS-VFKPLVGEALSRLDFVIRHPNALH 791 (927)
Q Consensus 715 ~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~d~-~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~~l~~~~~~~ 791 (927)
.++++++.++|.. +.||++.+++.++..+..+ .+..++..+..++.++...+. .+.+.+ .. ++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-------~~-i~------ 806 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFI-------DE-VQ------ 806 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HT-TS------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHH-------Hh-cc------
Confidence 9999999999988 9999999999999998754 456776666666666533221 111111 00 00
Q ss_pred chhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhcc---CCcccCCCCCChhHHH
Q 002400 792 SDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERS---DGEILGPNHQYLPKIV 868 (927)
Q Consensus 792 ~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~i~ 868 (927)
++ ....-+...|+..+..-.+..+++.++.+|+.++..+ ++.+.. ..+.++
T Consensus 807 ---------------------~~-~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~----~~~~~~ 860 (960)
T 1wa5_C 807 ---------------------DG-LFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPT----LISSTM 860 (960)
T ss_dssp ---------------------TT-HHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGG----GHHHHH
T ss_pred ---------------------hh-HHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHHH----HHHHHH
Confidence 00 0011123344444444344455555555555555443 111111 344444
Q ss_pred HHHHHHhcCCC--------------------------------------CCC--cHHHHHHHHHHHHHHHhhCChhhHHH
Q 002400 869 TIFAEVLCGGK--------------------------------------DLV--TEQTASRMINLLRQLQQSLPPSTLAS 908 (927)
Q Consensus 869 ~~~~~~l~~~~--------------------------------------~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 908 (927)
..+...+.... ... +.+.+.-+.+.|+.+.+..|+. ++.
T Consensus 861 ~~i~~l~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~-~~~ 939 (960)
T 1wa5_C 861 NSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNT-FLN 939 (960)
T ss_dssp HHHHHHHHSCSTTCSCCSCC-----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HHHHHHHhCCcccccCCccccccccccccccchHHHHHHhCCCCCCCChhhhcCcCCHHHHHHHHHHHHhccCCch-HHH
Confidence 44444332210 011 1378888999999999998876 888
Q ss_pred H-HhcCCHHHHHHHHHhhcC
Q 002400 909 T-WSSLQPQQQLALQSILSS 927 (927)
Q Consensus 909 ~-~~~l~~~~~~~l~~~~~~ 927 (927)
+ .++|+++.|+.|+.++.+
T Consensus 940 l~~~~l~~~~~~~l~~~~~~ 959 (960)
T 1wa5_C 940 TILPQLTQENQVKLNQLLVG 959 (960)
T ss_dssp HHGGGSCHHHHHHHHHHHC-
T ss_pred HHhccCCHHHHHHHHHHHcc
Confidence 8 779999999999999864
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.3e-41 Score=413.42 Aligned_cols=653 Identities=19% Similarity=0.215 Sum_probs=524.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhh-----ChhH---HHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccc
Q 002400 23 ETLISNLMSSSNEHRSHAEVLLSHLRQS-----HPDA---FALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFT 94 (927)
Q Consensus 23 ~~~L~~~~s~d~~~r~~Ae~~l~~~~~~-----~p~~---~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~ 94 (927)
..++..+.+.+.++|..|--.|+..-+. .++. .-..+++.+. +.++.+|..++..+....... ....|.
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~--~~~~wp 127 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKG--ELQNWP 127 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHT--TTTTCT
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc--CccccH
Confidence 3334433567888999999888864321 2221 2222333332 677899999999999887654 233465
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCC-------CCccchHHHHHHHhcCCChHHHHHHHHHH
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPD-------GDWPELIPFIFQCLVTFNDKIQESALLIL 167 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~-------~~w~~ll~~l~~~l~s~~~~~r~~al~~l 167 (927)
. +...|++.+.+. +..+|..+..+++.+.....+. ..++.++|.++++++++++.+|..|+.++
T Consensus 128 ~--------ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL 198 (852)
T 4fdd_A 128 D--------LLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACV 198 (852)
T ss_dssp T--------HHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4 456667777765 7889999999999888754321 23677888999989999999999999999
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhH
Q 002400 168 SRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESS 247 (927)
Q Consensus 168 ~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~ 247 (927)
..++...+..+..+++.+++.+...+++++++||..|++++..++ ... ...+.++++.+++.+...+.+.++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~-~~~-----~~~~~~~l~~l~~~l~~~~~~~~~~v 272 (852)
T 4fdd_A 199 NQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL-EVR-----MDRLLPHMHNIVEYMLQRTQDQDENV 272 (852)
T ss_dssp HTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH-HHC-----HHHHGGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhC-----HHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 988877666677788899999999999999999999999999999 543 24566777788888888888888999
Q ss_pred HHHHHHHHHHHHccC--cHHHHHHHHHHHHHHHHHh-----------hc-----------c-------------------
Q 002400 248 AQEALELLIELAATE--PRFLRKQLVDVVGSMLQVA-----------EA-----------E------------------- 284 (927)
Q Consensus 248 ~~~a~~~l~~l~~~~--~~~~~~~l~~ll~~ll~~~-----------~~-----------~------------------- 284 (927)
+..++++|..+++.. .+++.+++..++|.++..+ .+ +
T Consensus 273 r~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~ 352 (852)
T 4fdd_A 273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY 352 (852)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc
Confidence 999999999998753 3456677778888776654 12 1
Q ss_pred ---------CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc
Q 002400 285 ---------AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 285 ---------~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 355 (927)
+++.+.+++++|+.|++|+.++|.+++++++.+.++++.+++.+++.++|+++.||.+|++++|+++++++
T Consensus 353 ~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 353 RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45566778899999999999999999999998889999999999999999999999999999999999876
Q ss_pred hhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002400 356 PELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 435 (927)
Q Consensus 356 ~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l 435 (927)
+.....++..+++.+++.+.| +++.||..|+++|.++++.++.. +.||++.+++.|+..++..+......++.+++.+
T Consensus 433 ~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 433 SQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL 510 (852)
T ss_dssp HSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 543357889999999999999 89999999999999999988755 7899999999999999988888888899999999
Q ss_pred HHHhhhhh--HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhcc-------
Q 002400 436 ADSSQGQF--QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------- 506 (927)
Q Consensus 436 ~~~~~~~~--~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~------- 506 (927)
+...++.+ .+|++.++|.+.+.+....+ ++..++ .+++|++.++..+| ..|.||++.+++.++.+...
T Consensus 511 ~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d-~~~~~~-~~~~~l~~i~~~~g-~~~~~~~~~i~~~~~~~l~~~l~~~~~ 587 (852)
T 4fdd_A 511 ADSVGHHLNKPEYIQMLMPPLIQKWNMLKD-EDKDLF-PLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQKTLAQAML 587 (852)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHHHHHHHSCT-TCTTHH-HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHhccc-ccHHHH-HHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 46999999999988765444 234455 68999999999999 58999999988866553221
Q ss_pred ------CCC-CCCcchHHHHHHHHHHHHHhccccccch--hhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhcc
Q 002400 507 ------QME-ADDPTTSYMLQAWARLCKCLGQEFIPYM--SVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITL 577 (927)
Q Consensus 507 ------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (927)
..+ .+...+..++.+++.+++.+|.++.+|+ +.+++.+++.+..+.
T Consensus 588 ~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~------------------------- 642 (852)
T 4fdd_A 588 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM------------------------- 642 (852)
T ss_dssp HHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS-------------------------
T ss_pred hhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCC-------------------------
Confidence 111 1344677788999999999999999998 899999999884310
Q ss_pred CCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002400 578 GDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQS 657 (927)
Q Consensus 578 ~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~ 657 (927)
.+-+..|+.+++.++..++..|.||++.+++.+...+...
T Consensus 643 -----------~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~----------------------------- 682 (852)
T 4fdd_A 643 -----------PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE----------------------------- 682 (852)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT-----------------------------
T ss_pred -----------hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc-----------------------------
Confidence 0225678899999999999999999998888877665331
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHH
Q 002400 658 QGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLP 737 (927)
Q Consensus 658 ~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~ 737 (927)
...+|..|+.++|+++...|+.+.||+..+++
T Consensus 683 ------------------------------------------------~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~ 714 (852)
T 4fdd_A 683 ------------------------------------------------FISVCNNATWAIGEISIQMGIEMQPYIPMVLH 714 (852)
T ss_dssp ------------------------------------------------SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHH
T ss_pred ------------------------------------------------chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 25567778888888888889899999999999
Q ss_pred HHHHHccCC--ChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCC
Q 002400 738 FLLEACNDK--HPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDS 815 (927)
Q Consensus 738 ~l~~~l~d~--~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~ 815 (927)
.+++.++++ ...++++|+.++|.++...++.+.||++.+++.+...+.... +...++.+..+++.++..+|+.
T Consensus 715 ~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~-----d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 715 QLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIR-----DNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSC-----SSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHHHHhChHh
Confidence 999999875 458999999999999999888888999999999999886432 2346788999999999999886
Q ss_pred C
Q 002400 816 I 816 (927)
Q Consensus 816 ~ 816 (927)
+
T Consensus 790 ~ 790 (852)
T 4fdd_A 790 V 790 (852)
T ss_dssp T
T ss_pred H
Confidence 4
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=8.5e-40 Score=400.84 Aligned_cols=696 Identities=16% Similarity=0.170 Sum_probs=543.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhh------ChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccC
Q 002400 24 TLISNLMSSSNEHRSHAEVLLSHLRQS------HPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLA 97 (927)
Q Consensus 24 ~~L~~~~s~d~~~r~~Ae~~l~~~~~~------~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~ 97 (927)
.+++.+.++++.+|+++-+.+..+... .| .+++.|.+.+.++.++.+|+.|...|+......+ .. .. .-
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~-~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~--~~-~~-~~ 173 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-ELMKIMVDNTGAEQPENVKRASLLALGYMCESAD--PQ-SQ-AL 173 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS--TT-SS-TT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC--hh-hh-HH
Confidence 445666788889999999888875432 23 3677777777544389999999988888776431 00 00 12
Q ss_pred HhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhccC---C-CCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 002400 98 PSTQANLKSVLLVQLQNE-TNKSIIKKICDAVSELAASVL---P-DGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQ 172 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~-~~~~vr~~~~~~i~~ia~~~~---~-~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~ 172 (927)
......+...+++.+.++ +++.||..+..+++.+..... . ...|+.+++.+.+.++++++.+|..++.+|..+++
T Consensus 174 ~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 345666777788888764 378899999999988754321 1 01367789999988889999999999999999999
Q ss_pred hhHHHHHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch------------hHHhHHhhHHHHHHHHHHH
Q 002400 173 FVSEVLIAHGD-TLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG------------EKERFLDLLPLMMRTLTEA 239 (927)
Q Consensus 173 ~~~~~l~~~~~-~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~~~p~ll~~l~~~ 239 (927)
..++.+.+++. .+++.+...+.+.+..+|..|+.+|..++ ....... .......+++.+++.+...
T Consensus 254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~ 332 (861)
T 2bpt_A 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC-EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL 332 (861)
T ss_dssp HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 98888888888 99999999999999999999999999988 4310000 0012233445555555554
Q ss_pred HhcC-------ChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhh
Q 002400 240 LNKG-------NESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 240 l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~ 312 (927)
+... ++.++..+...+..++...+ ...++.+++.+. +.+++++|+.|++|+.++|.++++
T Consensus 333 l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~----------~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVE----------QNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHH----------HHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHH----------HHcCCCChhHHHHHHHHHHHHHcC
Confidence 4431 23567778888877775432 123445555444 666778999999999999999999
Q ss_pred ch-HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhH-HHHhHhhHHHHHHHhccCCCCchHHHHHHHHH
Q 002400 313 CS-KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPEL-QTQFHHRLLPALVGAMDDFQNPRVQAHAASAV 390 (927)
Q Consensus 313 ~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al 390 (927)
+. +.+.++++.+++.+++.+.|+++.||.++++++|+++..+++.+ ...++..++|.++..+.+ + +.||..|++++
T Consensus 400 ~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~-~~v~~~a~~al 477 (861)
T 2bpt_A 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-H-PKVATNCSWTI 477 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-C-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-C-hHHHHHHHHHH
Confidence 85 77788999999999999999999999999999999999887542 136889999999999988 5 99999999999
Q ss_pred HHhHhcCC---CccccCchHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc----
Q 002400 391 LNFSENCT---PDILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNA---- 461 (927)
Q Consensus 391 ~~l~~~~~---~~~~~~~l~~l~~~L~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~---- 461 (927)
..+++.++ .+.+.||++.+++.++..+++.+ +.+|..++.+++.++...+..+.+|++.++|.+.+.+...
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 557 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVD 557 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998865 36678999999999999998543 7899999999999999999999999999999999988743
Q ss_pred ----c--C-cchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCC-cchHHHHHHHHHHHHHhcccc
Q 002400 462 ----N--D-KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADD-PTTSYMLQAWARLCKCLGQEF 533 (927)
Q Consensus 462 ----~--~-~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 533 (927)
. + +....+|..++++++.++..+| ..+.|+.+.+++.+....... +. .++..++.+++.++...|.+|
T Consensus 558 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~---~~~~v~~~~~~~l~~l~~~~~~~~ 633 (861)
T 2bpt_A 558 ENQLTLEDAQSLQELQSNILTVLAAVIRKSP-SSVEPVADMLMGLFFRLLEKK---DSAFIEDDVFYAISALAASLGKGF 633 (861)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHHHHST---TGGGTHHHHHHHHHHHHHHHGGGG
T ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHccC---CCCcHHHHHHHHHHHHHHHHhhhH
Confidence 1 0 2345688899999999999999 478899999999988765432 12 678999999999999999999
Q ss_pred ccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccccccc
Q 002400 534 IPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPW 613 (927)
Q Consensus 534 ~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~ 613 (927)
.+|++.++|.+++.++.+ +. +.+..|+.+++.++..++..+.||
T Consensus 634 ~~~l~~i~~~l~~~l~~~-----------------~~-------------------~vr~~a~~~l~~l~~~~~~~~~~~ 677 (861)
T 2bpt_A 634 EKYLETFSPYLLKALNQV-----------------DS-------------------PVSITAVGFIADISNSLEEDFRRY 677 (861)
T ss_dssp HHHHHHHHHHHHHHHHCT-----------------TS-------------------HHHHHHHHHHHHHHHHTGGGGHHH
T ss_pred HHHHHHHHHHHHHHhccc-----------------cH-------------------HHHHHHHHHHHHHHHHhchhccch
Confidence 999999999999999421 00 124668889999999999999999
Q ss_pred HHHHHHHHhhhhccc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCC---hHHHH
Q 002400 614 IDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEP---EIDIC 689 (927)
Q Consensus 614 ~~~~~~~l~~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~---d~~v~ 689 (927)
++.+++.+...+.+. .+.++|..+..+++.++..++ ..+.++++.++|.+++.+.... |.+..
T Consensus 678 ~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~-------------~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~ 744 (861)
T 2bpt_A 678 SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-------------ADFIPYLNDIMALCVAAQNTKPENGTLEAL 744 (861)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHHHHHHHHTCCCSSSSHHHH
T ss_pred HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 999999999988864 347899999999999998752 1267788899999998886432 11110
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhh---hhhhhhHHhHHHHHHHHccCC----ChhHHhhHhHHHHHHH
Q 002400 690 ASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCR---EAALKYYDTYLPFLLEACNDK----HPDVRQAAVYGIGVCA 762 (927)
Q Consensus 690 ~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~d~----~~~vr~~a~~~lg~l~ 762 (927)
. ....+|..++.+++.++..+| ..+.+|++.+++.+...+.|. +..+|..|+.++|.++
T Consensus 745 ~--------------~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 745 D--------------YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp H--------------HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 0 014578889999999998887 668889999999999988774 8899999999999999
Q ss_pred hhc-CCCcHHHHH-HHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHh
Q 002400 763 EFG-GSVFKPLVG-EALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQ 810 (927)
Q Consensus 763 ~~~-~~~~~~~~~-~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~ 810 (927)
... |..+.+|++ .+++.|.+.+..... .+..++++|.-|++.+.+
T Consensus 811 ~~~~g~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 811 AMFPDGSIKQFYGQDWVIDYIKRTRSGQL---FSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHCTTSTTGGGTTCHHHHHHHHHHHHCSS---SCHHHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHhcHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHH
Confidence 987 888999999 889998887763111 235578888888887754
No 8
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=3.4e-37 Score=380.77 Aligned_cols=648 Identities=16% Similarity=0.200 Sum_probs=456.4
Q ss_pred cCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccc
Q 002400 15 LGPNPAHFETLISN-LMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIF 93 (927)
Q Consensus 15 ~~~~~~~l~~~L~~-~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w 93 (927)
+.++.+++.++|+. ..++|++.|++|+++|+++++ +|+.| ..+..++.++.++++|++|+++||+.+.++ |
T Consensus 19 ~~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~------w 90 (963)
T 2x19_B 19 LDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY------W 90 (963)
T ss_dssp CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC------G
T ss_pred CHhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHhC------H
Confidence 34679999999999 457999999999999999998 69855 678888877889999999999999999998 9
Q ss_pred cccCHhHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcC-----CChHHHHHHHHH
Q 002400 94 TRLAPSTQANLKSVLLVQLQNET--NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVT-----FNDKIQESALLI 166 (927)
Q Consensus 94 ~~l~~~~~~~ik~~Ll~~l~~~~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s-----~~~~~r~~al~~ 166 (927)
..++++.+..||+.+++.+.+.. ++.||++++.+++.|++.++| ..||++++.+++++++ +++..++.++.+
T Consensus 91 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~i 169 (963)
T 2x19_B 91 SDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLEL 169 (963)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999999999998742 688999999999999999999 6799999999999876 366788999999
Q ss_pred HHHhhhhhH-------------HHHHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHH------------------
Q 002400 167 LSRMSQFVS-------------EVLIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIM------------------ 213 (927)
Q Consensus 167 l~~l~~~~~-------------~~l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~------------------ 213 (927)
|..+++... +.+..+++.+++++...+.+. +..++..+++|+..++.
T Consensus 170 L~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~ 249 (963)
T 2x19_B 170 LTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAA 249 (963)
T ss_dssp HHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHH
T ss_pred HHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHH
Confidence 999987541 122345677777777777654 22355556665544330
Q ss_pred ------------------hhCCCchhHHhHHhhHHHHHHHHH---HHHhcCCh---------------------------
Q 002400 214 ------------------NCLPSLGEKERFLDLLPLMMRTLT---EALNKGNE--------------------------- 245 (927)
Q Consensus 214 ------------------~~~~~~~~~~~~~~~~p~ll~~l~---~~l~~~~~--------------------------- 245 (927)
...........+..+++.++..+. ..+..+|.
T Consensus 250 l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 329 (963)
T 2x19_B 250 LQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEH 329 (963)
T ss_dssp TTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccc
Confidence 111000001122222222221100 00011111
Q ss_pred -------------------------hHHHHHHHHHHHHHccC-----------cHHHHHHHHHHHHHHHHHhh-------
Q 002400 246 -------------------------SSAQEALELLIELAATE-----------PRFLRKQLVDVVGSMLQVAE------- 282 (927)
Q Consensus 246 -------------------------~~~~~a~~~l~~l~~~~-----------~~~~~~~l~~ll~~ll~~~~------- 282 (927)
++...++++|..+++.. ...+++++..+++.++..+.
T Consensus 330 ~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~ 409 (963)
T 2x19_B 330 WQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEY 409 (963)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 11334455666665410 12345566666666554331
Q ss_pred -----cc-------------------------------Cchhhhh----CCcchhHHHHHHHHHHHHhhhchHHHHhhHH
Q 002400 283 -----AE-------------------------------AVFPGFL----AAPEWQKHHAVLIALAQIAEGCSKVMIKNLD 322 (927)
Q Consensus 283 -----~~-------------------------------~~i~~~l----~~~~~~~r~aal~al~~i~~~~~~~~~~~l~ 322 (927)
++ +++.+.+ ++.+|+.|+++++++|++++++.+...++++
T Consensus 410 ~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 410 GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 00 2334444 5678999999999999999998765556788
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc
Q 002400 323 QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL 402 (927)
Q Consensus 323 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 402 (927)
.+++.+ ..+.++++.||.++++++|++++++.... +++..+++.++..+.+ +.|+.+|+.+|..+++.++. .+
T Consensus 490 ~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~-~l 562 (963)
T 2x19_B 490 GLIGLI-PRISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKY-DL 562 (963)
T ss_dssp HHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGG-GC
T ss_pred HHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHH-HH
Confidence 888854 45666799999999999999999886543 7899999999999965 79999999999999999874 47
Q ss_pred cCchHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhh-hhhHHhHHHHHHHHHHHHhcc----cCcchhhHHHHHHH
Q 002400 403 TPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-GQFQKYYDAVMPYLKAILVNA----NDKSNRMLRAKSME 475 (927)
Q Consensus 403 ~~~l~~l~~~L~~~l~~--~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~----~~~~~~~lr~~a~~ 475 (927)
.||++.+++.+..+++. .+...+..++++++.++...+ +.+.+|++.+++.+...|+.. .+++....+...++
T Consensus 563 ~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 642 (963)
T 2x19_B 563 PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILG 642 (963)
T ss_dssp TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 89999999999999986 357889999999999998886 788999999999998887642 22334445567899
Q ss_pred HHHHHHHhhCc---------------------chhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccc
Q 002400 476 CISLVGMAVGK---------------------DKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFI 534 (927)
Q Consensus 476 ~l~~l~~~~~~---------------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 534 (927)
|++.++++++. +.+.++...+++.+..+..... .+..+.+.+..+++.++..+|+++.
T Consensus 643 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~ 721 (963)
T 2x19_B 643 LLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFA 721 (963)
T ss_dssp HHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTG
T ss_pred HHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccccc
Confidence 99999998873 1244456666666555433211 2234677777788888888888888
Q ss_pred cchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcc--cccc
Q 002400 535 PYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKE--GFFP 612 (927)
Q Consensus 535 ~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~--~~~~ 612 (927)
||++.+++.++......+. ...+.+++.++...+. .+.|
T Consensus 722 ~~l~~~~~~l~~~~~~~~~---------------------------------------~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 722 PMVPQLCEMLGRMYSTIPQ---------------------------------------ASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp GGHHHHHHHHHHHHHHSCC---------------------------------------HHHHHHHHHHHHHHTTCTTTCH
T ss_pred ccHHHHHHHHHHHHHcCCc---------------------------------------cHHHHHHHHHHHHhCCCcchHH
Confidence 8888888777765532100 1122333333331111 1111
Q ss_pred cHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHH
Q 002400 613 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASM 692 (927)
Q Consensus 613 ~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~ 692 (927)
.+..+++.++..++..+..+.
T Consensus 763 ---------------------------------------------------~~~~~l~~~~~~~l~~~~~~~-------- 783 (963)
T 2x19_B 763 ---------------------------------------------------PIEALFLLVTSVTLTLFQQGP-------- 783 (963)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHCT--------
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHhhCc--------
Confidence 122233333333333333221
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhh--hh-HHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcC--C
Q 002400 693 LDALNESIQGKDKTAEERRIAICIFDDVMEHCREAAL--KY-YDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGG--S 767 (927)
Q Consensus 693 l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~-~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~--~ 767 (927)
...++.|...+..+++++.+++..+. +. ++.+++.++..+..+++.+...++..+..++...+ .
T Consensus 784 -----------~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~ 852 (963)
T 2x19_B 784 -----------RDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVE 852 (963)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSC
T ss_pred -----------ccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChH
Confidence 13478889999999999999987764 44 88899999999999999999999999999987643 1
Q ss_pred ----CcHHHHHHHHHHHHHhhcCCC
Q 002400 768 ----VFKPLVGEALSRLDFVIRHPN 788 (927)
Q Consensus 768 ----~~~~~~~~il~~L~~~l~~~~ 788 (927)
.+.++...++..+...+.+..
T Consensus 853 ~~~~~~~~~~~~l~~~l~~~l~~~~ 877 (963)
T 2x19_B 853 SVGKVVQEDGRMLLIAVLEAIGGQA 877 (963)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 234667788888877776543
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=9.3e-37 Score=374.63 Aligned_cols=702 Identities=16% Similarity=0.173 Sum_probs=527.4
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHHHHHh----------------hChh---HHHHHHHHHHhcCCChhHHHHHHHHHHhh
Q 002400 24 TLISNLMS--SSNEHRSHAEVLLSHLRQ----------------SHPD---AFALNLSRMLSSSSLPECRAMSAILLRKH 82 (927)
Q Consensus 24 ~~L~~~~s--~d~~~r~~Ae~~l~~~~~----------------~~p~---~~~~~L~~il~~~~~~~~R~~a~v~Lk~~ 82 (927)
.+++.+.+ ++..+|..|-..|+..-. -.++ ..-..+++.+. +.++.+ ..++..+...
T Consensus 39 ~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~~i 116 (876)
T 1qgr_A 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVAGI 116 (876)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHHHH
Confidence 34444545 457789999888886421 1111 01122445444 344455 5666666555
Q ss_pred cccCccccccccccCHhHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHhccCC---CCCccchHHHHHHHhcCC--C
Q 002400 83 LTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNET-NKSIIKKICDAVSELAASVLP---DGDWPELIPFIFQCLVTF--N 156 (927)
Q Consensus 83 i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~-~~~vr~~~~~~i~~ia~~~~~---~~~w~~ll~~l~~~l~s~--~ 156 (927)
.... .....|.. +...+++.+.++. ++.+|..+..+++.+.....+ ....+.+++.+.+.+.++ +
T Consensus 117 ~~~~-~~~~~w~~--------ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 187 (876)
T 1qgr_A 117 ACAE-IPVNQWPE--------LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 187 (876)
T ss_dssp HHHH-GGGTCCTT--------HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred HHhh-CcccccHH--------HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCC
Confidence 4332 00123654 4455666676543 678999999999999875321 134567888888888776 6
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHh--HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHH-HHH
Q 002400 157 DKIQESALLILSRMSQFVSEVLIAH--GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLP-LMM 233 (927)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l~~~--~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p-~ll 233 (927)
..+|..++.++..++...+..+... .+.+++.+...+.+++.++|..+++++..++ ...+ ..+.++++ .++
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~-~~~~-----~~~~~~~~~~l~ 261 (876)
T 1qgr_A 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM-SLYY-----QYMETYMGPALF 261 (876)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHSG-----GGCHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHhH-----HHHHHHHHHHHH
Confidence 8899999999999988766544321 1347888888888889999999999999999 5442 22344444 556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHccC---------------------cHHHHHHHHHHHHHHHHHhh-------cc-
Q 002400 234 RTLTEALNKGNESSAQEALELLIELAATE---------------------PRFLRKQLVDVVGSMLQVAE-------AE- 284 (927)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---------------------~~~~~~~l~~ll~~ll~~~~-------~~- 284 (927)
+.+...+.+.++.++..++++|..+++.. ..+.++++..++|.+++.+. ++
T Consensus 262 ~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~ 341 (876)
T 1qgr_A 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD 341 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccc
Confidence 66666666778889999999999887542 13455677788888777652 11
Q ss_pred ---------------------------CchhhhhCCcchhHHHHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccCCCC
Q 002400 285 ---------------------------AVFPGFLAAPEWQKHHAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQDPH 336 (927)
Q Consensus 285 ---------------------------~~i~~~l~~~~~~~r~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~ 336 (927)
+++.+.+++++|++|++|+.+++.+++++. +.+.++++.+++.++..++|++
T Consensus 342 ~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~ 421 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS 421 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344566778999999999999999999987 6677889999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhchhH-HHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC-------------Cccc
Q 002400 337 PRVRWAAINAIGQLSTDLGPEL-QTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT-------------PDIL 402 (927)
Q Consensus 337 ~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~-------------~~~~ 402 (927)
+.||.+|+++++++++.+++.. ..+++..+++.++..+.+ + +.||..++++|..+++.++ .+.+
T Consensus 422 ~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 422 VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-C-HHHHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 9999999999999999876543 246889999999999988 5 8999999999999997753 2457
Q ss_pred cCchHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcc--------cCcc---hhh
Q 002400 403 TPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNA--------NDKS---NRM 468 (927)
Q Consensus 403 ~~~l~~l~~~L~~~l~~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~--------~~~~---~~~ 468 (927)
.||++.+++.|+..+... +..+|..++.+++.++...+.++.+|++.++|.+...+... .+.+ ...
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 899999999999999865 35789999999999999999999999999999999888752 1111 145
Q ss_pred HHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHc
Q 002400 469 LRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSA 548 (927)
Q Consensus 469 lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l 548 (927)
+|..++.+++.++..+|.+.+.||++.+++.++.+.....+ ...++..++.+++.++...|..|.||++.++|.+...+
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 658 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 78889999999999998556899999999999886543210 12478889999999999999999999999999999998
Q ss_pred ccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhccc
Q 002400 549 QLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY 628 (927)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 628 (927)
.... + ..-+..|+.+++.++..++..+.||++.+++.++..+...
T Consensus 659 ~~~~----------------~-------------------~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 659 KNYA----------------E-------------------YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp HHCT----------------T-------------------HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT
T ss_pred cCcc----------------h-------------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCc
Confidence 5320 0 0125678899999999999999999999999999998762
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCC---hHHHHHHHHHHHHHhhcCCC
Q 002400 629 -FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEP---EIDICASMLDALNESIQGKD 704 (927)
Q Consensus 629 -~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~---d~~v~~~~l~~l~~~~~~~~ 704 (927)
.+.++|..++.+++.++..++. .+..++..++|.+.+.+..+. |.+...
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~-------------~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~-------------- 756 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGG-------------EFKKYLEVVLNTLQQASQAQVDKSDYDMVD-------------- 756 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGG-------------GGGGGHHHHHHHHHHHHTCCCCTTCHHHHH--------------
T ss_pred cccHHhhHHHHHHHHHHHHHhch-------------hHHHHHHHHHHHHHHHHhccCCCCChHHHH--------------
Confidence 4678999999999999876521 144567788888888775432 111000
Q ss_pred CChhhHHHHHHHHHHHHHHhhh----------hhhhhHHhHHHHHHHHccCC--ChhHHhhHhHHHHHHHhhcCC-CcHH
Q 002400 705 KTAEERRIAICIFDDVMEHCRE----------AALKYYDTYLPFLLEACNDK--HPDVRQAAVYGIGVCAEFGGS-VFKP 771 (927)
Q Consensus 705 ~~~~~r~~a~~~l~~l~~~~~~----------~~~~~~~~ll~~l~~~l~d~--~~~vr~~a~~~lg~l~~~~~~-~~~~ 771 (927)
.....|..++.+++.++...|. .+.+|++.+++.+.....++ +..+|..|+.++|.++...|. .+.+
T Consensus 757 ~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 836 (876)
T 1qgr_A 757 YLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 0136778888888888887764 56679999998777766776 789999999999999999888 8888
Q ss_pred H-HHHHHHHHHH-hhcCCCCCCchhhhHHHHHHHHHHHHHhhcC
Q 002400 772 L-VGEALSRLDF-VIRHPNALHSDNVMAYDNAVSALGKICQFHR 813 (927)
Q Consensus 772 ~-~~~il~~L~~-~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 813 (927)
| ...+++.+.. .+.++ +..+|.+|+.|+|.+.+..+
T Consensus 837 ~~~~~~i~~ll~~~l~~~------~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 837 VEARPMIHELLTEGRRSK------TNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHTSHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcHHHHHHHHHHhhcC------CHhHHHHHHHHHHHHHHhhc
Confidence 8 4677887777 77554 35699999999999987554
No 10
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-38 Score=386.10 Aligned_cols=667 Identities=12% Similarity=0.151 Sum_probs=436.7
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
+|.+++.++++.+.+||++.|++|+++|+++++ +|+.| ..+.+++.++.++++|++|+++||+.+.++ |..+
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~------w~~l 75 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH------WHEV 75 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC------GGGC
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHcc------HhhC
Confidence 678899999999999999999999999999998 69854 678888877889999999999999999998 9999
Q ss_pred CHhHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC------ChHHHHHHHHHHH
Q 002400 97 APSTQANLKSVLLVQLQNET--NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF------NDKIQESALLILS 168 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~------~~~~r~~al~~l~ 168 (927)
+++.+..+|+.+++.+.+.. ++.||++++.+++.|+++++| .||++++.+++.++++ ++..++.++.+|.
T Consensus 76 ~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~ 153 (971)
T 2x1g_F 76 PPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLT 153 (971)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence 99999999999999998753 689999999999999999999 8999999999998775 5678999999999
Q ss_pred HhhhhhH------------HHHHHhHHHHHHHHHhhhCCC-C-------HHHHHHHHHHHHHHHHhh--CCCc-------
Q 002400 169 RMSQFVS------------EVLIAHGDTLHEVFSKFLGSN-N-------FDLRIAALEATVNFIMNC--LPSL------- 219 (927)
Q Consensus 169 ~l~~~~~------------~~l~~~~~~l~~~l~~~l~~~-~-------~~vr~~a~~~l~~l~~~~--~~~~------- 219 (927)
.+++.+. +.+..+++.+++++.+++.+. + ..++..+++|+..++ .+ ++..
T Consensus 154 ~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~-~~~~ip~~~~~~ll~ 232 (971)
T 2x1g_F 154 AIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWI-KNIGYTIEGCVTITA 232 (971)
T ss_dssp HHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH-HHSCCCGGGHHHHHH
T ss_pred HhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHH-hhCCcCccccccHHH
Confidence 9997532 334446677777776666432 1 167777888777655 31 1100
Q ss_pred -----------------------h-----------------------hHHhHHhhHHHHHHHHHHHH---hcCCh---hH
Q 002400 220 -----------------------G-----------------------EKERFLDLLPLMMRTLTEAL---NKGNE---SS 247 (927)
Q Consensus 220 -----------------------~-----------------------~~~~~~~~~p~ll~~l~~~l---~~~~~---~~ 247 (927)
. ....+..++|.++....... .++|. +.
T Consensus 233 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~ 312 (971)
T 2x1g_F 233 VLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDI 312 (971)
T ss_dssp HHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHH
T ss_pred HHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHH
Confidence 0 00122233344333222211 12221 22
Q ss_pred HH---------------------------------------------------------HHHHHHHHHHcc---------
Q 002400 248 AQ---------------------------------------------------------EALELLIELAAT--------- 261 (927)
Q Consensus 248 ~~---------------------------------------------------------~a~~~l~~l~~~--------- 261 (927)
+. .++++|..+++.
T Consensus 313 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 392 (971)
T 2x1g_F 313 IVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQ 392 (971)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccc
Confidence 22 223333333220
Q ss_pred C---cHHHHHHHHHHHHHHHHHhh---c------------c----------------------------CchhhhhCC--
Q 002400 262 E---PRFLRKQLVDVVGSMLQVAE---A------------E----------------------------AVFPGFLAA-- 293 (927)
Q Consensus 262 ~---~~~~~~~l~~ll~~ll~~~~---~------------~----------------------------~~i~~~l~~-- 293 (927)
. ...+++++..+++.++..+. + + +++.+.+++
T Consensus 393 ~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 393 KHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 0 01234445555555444331 0 0 222333332
Q ss_pred ---cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC--CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 294 ---PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ--DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 294 ---~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
++|+.|++++++++++++++.+...++++.+++ ++..+. |+++.||.++++++|++++++.... +++..+++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~ 549 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAIN 549 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 689999999999999999998777788888988 444555 6799999999999999999987644 78999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhh-hhhHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-GQFQK 445 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~--~~~~v~~~a~~al~~l~~~~~-~~~~~ 445 (927)
.++..+ + +.|+.+|+.++..+++.++. .+.||++.+++.+..++++ .+...+..++++++.++...+ +.+.+
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~~~-~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDCQL-QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C---hHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999998 4 78999999999999999874 4789999999999999998 457899999999999998775 66788
Q ss_pred hHHHHHHHHHHHHhccc-----CcchhhHHHHHHHHHHHHHHhhCc------------chhhhhHHHHHHHHHHHhccCC
Q 002400 446 YYDAVMPYLKAILVNAN-----DKSNRMLRAKSMECISLVGMAVGK------------DKFRDDAKQVMEVLMSLQGSQM 508 (927)
Q Consensus 446 ~~~~i~~~L~~~l~~~~-----~~~~~~lr~~a~~~l~~l~~~~~~------------~~~~~~~~~i~~~l~~~~~~~~ 508 (927)
|+..+++.+...+.... +++...-...++++++.+...++. +.+.++...+++.+..+... .
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~ 703 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-W 703 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh-c
Confidence 88888888777665421 111222223345556666565552 34677788888887775442 2
Q ss_pred CCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhh
Q 002400 509 EADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSV 588 (927)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (927)
..+.++.+.+..++++++..+|+++.||++.+++.++..+...+.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----------------------------------- 748 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC----------------------------------- 748 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-----------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-----------------------------------
Confidence 234468889999999999999999999999999999988754210
Q ss_pred HHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002400 589 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQL 668 (927)
Q Consensus 589 ~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 668 (927)
..++.+++.++..++.+ +.++.. +..+
T Consensus 749 ----~~~l~l~~~~i~~~~~~---------------------~~~~~~----------------------------l~~~ 775 (971)
T 2x1g_F 749 ----APTLEISKTAIVMFFKD---------------------EGCKPL----------------------------MQQL 775 (971)
T ss_dssp ----HHHHHHHHHHHTTCCC--------------------------HH----------------------------HHHH
T ss_pred ----hHHHHHHHHHHHHhCCC---------------------cchHHH----------------------------HHHH
Confidence 12444555555444331 001000 1111
Q ss_pred HHHHHHHHHHHHccC--ChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhh--hh-HHhHHHHHHHHc
Q 002400 669 TDYIIPALVEALHKE--PEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAAL--KY-YDTYLPFLLEAC 743 (927)
Q Consensus 669 ~~~il~~ll~~l~~e--~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~-~~~ll~~l~~~l 743 (927)
+..+...++..+..- .+. +..++.+...+.++++++.+++..+. +. ++.+++..+..+
T Consensus 776 ~~~~~~~~~~~l~~~~~~~~-----------------~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 776 LREFIQHSFKLFESTPEQNF-----------------SNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HHHHHHHHHHHHTSCTTTHH-----------------HHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCC-----------------ccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence 111222222222211 000 12367888899999999999988776 67 888999988888
Q ss_pred cCCChhHHhhHhHHHHHHHhhcC--CCcH----HHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcC
Q 002400 744 NDKHPDVRQAAVYGIGVCAEFGG--SVFK----PLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHR 813 (927)
Q Consensus 744 ~d~~~~vr~~a~~~lg~l~~~~~--~~~~----~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 813 (927)
..+++.....++..+..++...+ ..+. ++.+.++..+...+.+.- .+...++++..++++...+|
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~s~~~~~a~~l~~l~~~~~ 909 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLT-----PRSQVDKFADILLAMNRKYA 909 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTS-----CGGGGGGGHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccC-----ChhHHHHHHHHHHHHHHHCc
Confidence 87777777778777777766642 2233 344455555544443221 12344667778888887664
No 11
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=3.4e-35 Score=362.96 Aligned_cols=685 Identities=13% Similarity=0.164 Sum_probs=474.8
Q ss_pred cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccc
Q 002400 15 LGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFT 94 (927)
Q Consensus 15 ~~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~ 94 (927)
+.++.+++.++|+.+++|+++.|++|+++|+++++ +|+ +...+.+++.++.++.+|++|+++||+.+.++ |.
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~-~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~------W~ 82 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPD-AWQKADQILQFSTNPQSKFIALSILDKLITRK------WK 82 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STT-GGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT------GG
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cch-HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh------Cc
Confidence 35788999999999999999999999999999988 687 45788888888889999999999999999998 99
Q ss_pred ccCHhHHHHHHHHHHHHHhhcc--------hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHH
Q 002400 95 RLAPSTQANLKSVLLVQLQNET--------NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLI 166 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~--------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~ 166 (927)
.++++.+..||+.+++.+.+.. ++.||++++.+++.|++.++| +.||++++.++++++ .++..++.++.+
T Consensus 83 ~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHH
Confidence 9999999999999999998753 378999999999999999999 899999999999986 566778899999
Q ss_pred HHHhhhhhH----------------HHHHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCC------------
Q 002400 167 LSRMSQFVS----------------EVLIAHGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLP------------ 217 (927)
Q Consensus 167 l~~l~~~~~----------------~~l~~~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~------------ 217 (927)
|..+++.+. +.+..+++.+++.+.+++++. +..++..+++++..++ ..++
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l-~wi~~~~~~~~~ll~~ 239 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYL-HWIPYRYIYETNILEL 239 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TTSCTHHHHSSSHHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-hhCCHHHHhhhhHHHH
Confidence 999987654 234455667777776666543 4556666666665443 2222
Q ss_pred ----------------------------Cch--hHHhHHhh---------------------------------------
Q 002400 218 ----------------------------SLG--EKERFLDL--------------------------------------- 228 (927)
Q Consensus 218 ----------------------------~~~--~~~~~~~~--------------------------------------- 228 (927)
... -...+..+
T Consensus 240 l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~ 319 (1049)
T 3m1i_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1049)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHH
Confidence 100 00000000
Q ss_pred ----------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc----c--CcHHHHHHHHHHHHHHHHH
Q 002400 229 ----------------------LPLMMRTLTEALNKGNESSAQEALELLIELAA----T--EPRFLRKQLVDVVGSMLQV 280 (927)
Q Consensus 229 ----------------------~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~----~--~~~~~~~~l~~ll~~ll~~ 280 (927)
+..+++.+..+...+++++...++++|..+++ . ....+++++..+++.++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~ 399 (1049)
T 3m1i_C 320 FLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIEN 399 (1049)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh
Confidence 11112222222334566778889999999887 2 2356678888888877754
Q ss_pred hh---------cc-----------------------------------------CchhhhhC--CcchhHHHHHHHHHHH
Q 002400 281 AE---------AE-----------------------------------------AVFPGFLA--APEWQKHHAVLIALAQ 308 (927)
Q Consensus 281 ~~---------~~-----------------------------------------~~i~~~l~--~~~~~~r~aal~al~~ 308 (927)
+. ++ +.+.+.++ +.+|+.|+++++++|+
T Consensus 400 m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 400 MVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred cCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 31 00 22333444 3689999999999999
Q ss_pred HhhhchHHHH-hhHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchH
Q 002400 309 IAEGCSKVMI-KNLDQVVSMVLNSF-----QDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRV 382 (927)
Q Consensus 309 i~~~~~~~~~-~~l~~l~~~l~~~l-----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v 382 (927)
+++++..... .+++.+++.+.... +|+++.||..+++++|++++++... ..++..+++.++..+.+ +++.|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHH
T ss_pred HhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcC-CCHHH
Confidence 9998776533 45788888776632 2467888888999999999988654 37899999999999998 89999
Q ss_pred HHHHHHHHHHhHhcCCCcc-------ccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh--hhhHHhHHHHHHH
Q 002400 383 QAHAASAVLNFSENCTPDI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--GQFQKYYDAVMPY 453 (927)
Q Consensus 383 ~~~a~~al~~l~~~~~~~~-------~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~~~i~~~ 453 (927)
+.+||.+|.++++.++... +.||++.+++.+..++...+..-....+++++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999876432 249999999999999998777778889999999998887 3578899999888
Q ss_pred HHHHHhccc--------Cc-chhhHH--HHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 002400 454 LKAILVNAN--------DK-SNRMLR--AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAW 522 (927)
Q Consensus 454 L~~~l~~~~--------~~-~~~~lr--~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 522 (927)
+...|.... +. +....+ ...++|++.++..+| ..|.|++..++..++.+... ....+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~~-----------~~~~~ 704 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRA-----------VSSMI 704 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 776654311 00 011111 345778888888998 67888888777655432211 00111
Q ss_pred HHHHHH-----hccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHH
Q 002400 523 ARLCKC-----LGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACN 597 (927)
Q Consensus 523 ~~l~~~-----~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~ 597 (927)
...... .+..+..++..+.|.+.+.+..
T Consensus 705 ~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~----------------------------------------------- 737 (1049)
T 3m1i_C 705 SAQVAAEGLIATKTPKVRGLRTIKKEILKLVET----------------------------------------------- 737 (1049)
T ss_dssp HHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHccCchhhhhHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 111111 1223445566666666655532
Q ss_pred HHHHHHHH---hcccccccHHHHHHHHhhhhcccCcHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 002400 598 MLCCYADE---LKEGFFPWIDQVAPTLVPLLKFYFHEEVR-KAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYII 673 (927)
Q Consensus 598 ~l~~l~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~vR-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il 673 (927)
+... ++..+.||++.++..++..+... ....| ..+..+++.++...+. .-.+++..++..+.
T Consensus 738 ----~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~-~~~~~~~~~l~l~~~ii~~~~~---------~~~~~l~~i~~~l~ 803 (1049)
T 3m1i_C 738 ----YISKARNLDDVVKVLVEPLLNAVLEDYMNN-VPDARDAEVLNCMTTVVEKVGH---------MIPQGVILILQSVF 803 (1049)
T ss_dssp ----HHHHCSCHHHHHHHTHHHHHHHHHHHHHHS-CGGGCCTHHHHHHHHHHHHHGG---------GCHHHHHHHHHHHH
T ss_pred ----HHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHH---------hhhhhHHHHHHHHH
Confidence 0000 01113455666655554433211 11111 2355666666655421 11234445555555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhh----hHHhHHHHHHHHccCCChh
Q 002400 674 PALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALK----YYDTYLPFLLEACNDKHPD 749 (927)
Q Consensus 674 ~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~ll~~l~~~l~d~~~~ 749 (927)
...+..+..+. +..++.|...+.++++++.+++..+.+ .+..++...+.++..+++.
T Consensus 804 ~~~~~~i~~~~-------------------~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~ 864 (1049)
T 3m1i_C 804 ECTLDMINKDF-------------------TEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRD 864 (1049)
T ss_dssp HHHHHHHSSCS-------------------SSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHhcch-------------------hhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCch
Confidence 55555554322 356889999999999999999887653 2566777778888999999
Q ss_pred HHhhHhHHHHHHHhhcC---C------CcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHh
Q 002400 750 VRQAAVYGIGVCAEFGG---S------VFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQ 810 (927)
Q Consensus 750 vr~~a~~~lg~l~~~~~---~------~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~ 810 (927)
+...++..+-.+..... + .+..|+..+++.+...+.+...+ ..-+..+.-+.+++.
T Consensus 865 ~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~-----s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 865 VEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHK-----SGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCG-----GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHh-----hhHHHHHHHHHHHHH
Confidence 99999888888776532 1 23557778899998888877533 233445666666664
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.2e-35 Score=375.75 Aligned_cols=685 Identities=12% Similarity=0.154 Sum_probs=526.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC
Q 002400 57 LNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 57 ~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
..|++-+. +.++.+|..|..-|.+.+... ...+++.....+...+++.|.+ +++.+|..++.+++.++....
T Consensus 9 ~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~------~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 9 SNLLEKMT-SSDKDFRFMATNDLMTELQKD------SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHTSSS------CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcC-CCCHhHHHHHHHHHHHHHccc------ccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCC
Confidence 34444433 789999999999999888765 4456667777888899999986 499999999999999997643
Q ss_pred CCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH------HHHhHHHHHHHHHhhhCC-CCHHHHHHHHHHHH
Q 002400 137 PDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV------LIAHGDTLHEVFSKFLGS-NNFDLRIAALEATV 209 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~------l~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~ 209 (927)
+ ..|+.+++.++..+.++++.+|..++.+++.++..++.. ...+.+.++|.+...+.+ ++..+|..|+.++.
T Consensus 81 ~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 E-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp H-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 3 578889999999999989999999999999999887654 345688999999999984 78999999999999
Q ss_pred HHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhh
Q 002400 210 NFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPG 289 (927)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~ 289 (927)
.++ ..++. .+.++++.+++.+...+.+++..++..++..+..++...+..+ ++.+++.+++.+.+
T Consensus 160 ~~~-~~~~~-----~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~------ 224 (1230)
T 1u6g_C 160 DML-SRQGG-----LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSK------ 224 (1230)
T ss_dssp HHH-HHTCS-----SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH------
T ss_pred HHH-HHhHh-----HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhcc------
Confidence 999 65432 2345667777777777777788899999999999887644322 33445544432221
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ 369 (927)
+.++..|..++.+++.++...++.+.++++.+++.++..++|+++.||..++.+++.++..++..+ .+|++.++|.
T Consensus 225 ---~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ 300 (1230)
T 1u6g_C 225 ---NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINI 300 (1230)
T ss_dssp ---TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHH
T ss_pred ---CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHH
Confidence 233678999999999999988887889999999999999999999999999999999999887766 5789999999
Q ss_pred HHHhccCC------------------------------------CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHH
Q 002400 370 LVGAMDDF------------------------------------QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKL 413 (927)
Q Consensus 370 ll~~l~~~------------------------------------~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L 413 (927)
++..+... ..+.||..|+.++..++...+ +.+.+|++.+++.+
T Consensus 301 ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l 379 (1230)
T 1u6g_C 301 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPAL 379 (1230)
T ss_dssp HTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHH
T ss_pred HHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHH
Confidence 98876410 135689999999999998654 45678888889988
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHhhh-------------------hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHH
Q 002400 414 LVLLQNGKQMVQEGALTALASVADSSQG-------------------QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSM 474 (927)
Q Consensus 414 ~~~l~~~~~~v~~~a~~al~~l~~~~~~-------------------~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~ 474 (927)
...+.+.+..+|..++.+++.++...+. .+.++++.++|.+.+.+.+ +.+.+|..++
T Consensus 380 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~----~~~~vr~~~~ 455 (1230)
T 1u6g_C 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE----KSVKTRQCCF 455 (1230)
T ss_dssp HSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC----SCHHHHHHHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc----CCHHHHHHHH
Confidence 8888888899999999999999876542 3456777788877777653 4567888899
Q ss_pred HHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHcccCCC
Q 002400 475 ECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQE-FIPYMSVVMPPLLQSAQLKPD 553 (927)
Q Consensus 475 ~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~i~~~ll~~l~~~~~ 553 (927)
.+++.++...+ ..+.++.+.+++.+......... ...++..++.++..+....+.+ |.||++.++|.+++.+...
T Consensus 456 ~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~-- 531 (1230)
T 1u6g_C 456 NMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP-- 531 (1230)
T ss_dssp HHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS--
T ss_pred HHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc--
Confidence 99999998865 66788999999998886543211 1246777788888888777665 9999999999999887321
Q ss_pred ccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcc-------cccccHHHHHHHHhhhhc
Q 002400 554 VIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKE-------GFFPWIDQVAPTLVPLLK 626 (927)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~-------~~~~~~~~~~~~l~~~l~ 626 (927)
.+ .-+..|+.+++.++..++. .+.||++.+
T Consensus 532 -----------------~~-----------------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~l--------- 568 (1230)
T 1u6g_C 532 -----------------FY-----------------KITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL--------- 568 (1230)
T ss_dssp -----------------SH-----------------HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHH---------
T ss_pred -----------------ch-----------------HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHH---------
Confidence 11 1134577778888877665 344444444
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCC
Q 002400 627 FYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKT 706 (927)
Q Consensus 627 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~ 706 (927)
+|.++..+... +.+
T Consensus 569 ----------------------------------------------l~~ll~~l~~~--------------------d~~ 582 (1230)
T 1u6g_C 569 ----------------------------------------------FTCTIKRLKAA--------------------DID 582 (1230)
T ss_dssp ----------------------------------------------HHHHHHHHSCS--------------------SSC
T ss_pred ----------------------------------------------HHHHHHHHhcc--------------------CCC
Confidence 44444444211 234
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcC-CCcHHHHHHHHHHHHHhhc
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGG-SVFKPLVGEALSRLDFVIR 785 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~~il~~L~~~l~ 785 (927)
..+|..|+.++|.++...|..+.++++.+++.+...+.++ .+|.+++.++|.++.... ..+.+|+..+++.|...+.
T Consensus 583 ~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~ 660 (1230)
T 1u6g_C 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence 6788888899999999999888889999999999888754 488999999999987543 4678999999999999887
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCC--CCcHHHHHHHHHHHHHHHhccCCcccCCCCCC
Q 002400 786 HPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPL--KGDLIEAKVVHAQLCSMVERSDGEILGPNHQY 863 (927)
Q Consensus 786 ~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~--~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~ 863 (927)
++ +..+|++++.|+++++...+..++.+.+.+.|...+|+ ..|.++...++++|..+++..++.+.. +
T Consensus 661 ~~------~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~----~ 730 (1230)
T 1u6g_C 661 KN------QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK----I 730 (1230)
T ss_dssp SC------CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG----T
T ss_pred hC------CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH----h
Confidence 65 46799999999999999998888888899988888887 678889999999999999876554433 4
Q ss_pred hhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhC
Q 002400 864 LPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSL 901 (927)
Q Consensus 864 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 901 (927)
.+.++..+...+... .........+..+++.+....
T Consensus 731 ~~~~l~~~~~~l~~~--~~~~~~~~~l~~~~~~l~~~~ 766 (1230)
T 1u6g_C 731 SGSILNELIGLVRSP--LLQGGALSAMLDFFQALVVTG 766 (1230)
T ss_dssp TTTTHHHHHHHHTCT--TCCHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHcCc--ccchHHHHHHHHHHHHHHhcC
Confidence 666677666666532 223445556667777776544
No 13
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=3.8e-31 Score=317.40 Aligned_cols=763 Identities=13% Similarity=0.153 Sum_probs=482.1
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccc
Q 002400 16 GPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTR 95 (927)
Q Consensus 16 ~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~ 95 (927)
++|.+++.++++.+++|+++.|++|+++|+++++ +|+.| ..+..++.++.++.+|++|+++||+.|.++ |..
T Consensus 12 ~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp~aw-~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~------W~~ 83 (1023)
T 4hat_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK------WKL 83 (1023)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CTTGG-GGHHHHHHHCCCHHHHHHHHHHHHHHHHHH------GGG
T ss_pred CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-CccHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh------hhc
Confidence 3889999999999999999999999999999999 68865 667788877889999999999999999998 999
Q ss_pred cCHhHHHHHHHHHHHHHhhcc--------hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHH
Q 002400 96 LAPSTQANLKSVLLVQLQNET--------NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLIL 167 (927)
Q Consensus 96 l~~~~~~~ik~~Ll~~l~~~~--------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l 167 (927)
++++.+..||+.+++.+.... .+.++++++.+++.|++.++| ..||++++.+++.+++ ++..+..++.+|
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 999999999999999987631 367888999999999999999 7899999999998865 456688888888
Q ss_pred HHhhhhhHH----------------HHHHhHHHHHHHHHhhhCCC-----------------------------------
Q 002400 168 SRMSQFVSE----------------VLIAHGDTLHEVFSKFLGSN----------------------------------- 196 (927)
Q Consensus 168 ~~l~~~~~~----------------~l~~~~~~l~~~l~~~l~~~----------------------------------- 196 (927)
..+.+.+.+ .+...++.+++++.+.+.++
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHH
Confidence 888777432 11223333333333333211
Q ss_pred -----CHHHHHHHHHHHHHHHHhhCCCc--hhHHhHHhhHHHHH------------------------------------
Q 002400 197 -----NFDLRIAALEATVNFIMNCLPSL--GEKERFLDLLPLMM------------------------------------ 233 (927)
Q Consensus 197 -----~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~~~p~ll------------------------------------ 233 (927)
++++|..|++|+..++....+.+ .-...+..+++.++
T Consensus 242 ~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~ 321 (1023)
T 4hat_C 242 TKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFL 321 (1023)
T ss_dssp THHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHH
Confidence 34556666677666662121001 00000000000100
Q ss_pred -------------------------HHHHHHHhcCChhHHHHHHHHHHHHHcc------CcHHHHHHHHHHHHHHHHHhh
Q 002400 234 -------------------------RTLTEALNKGNESSAQEALELLIELAAT------EPRFLRKQLVDVVGSMLQVAE 282 (927)
Q Consensus 234 -------------------------~~l~~~l~~~~~~~~~~a~~~l~~l~~~------~~~~~~~~l~~ll~~ll~~~~ 282 (927)
..+..+...++.++...++++|..+++. ....+++++..+++.+++.+.
T Consensus 322 ~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~ 401 (1023)
T 4hat_C 322 TTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1023)
T ss_dssp HHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111111123556667888999888753 134567788888888875431
Q ss_pred ---------cc-----------------------------------------CchhhhhCC--cchhHHHHHHHHHHHHh
Q 002400 283 ---------AE-----------------------------------------AVFPGFLAA--PEWQKHHAVLIALAQIA 310 (927)
Q Consensus 283 ---------~~-----------------------------------------~~i~~~l~~--~~~~~r~aal~al~~i~ 310 (927)
++ +.+.+.+.+ .+|+.|+|+++++|+++
T Consensus 402 ~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa 481 (1023)
T 4hat_C 402 RPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS 481 (1023)
T ss_dssp CCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTT
T ss_pred CCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 10 122222333 68999999999999999
Q ss_pred hhchHH-HHhhHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHH
Q 002400 311 EGCSKV-MIKNLDQVVSMVLNSFQ-----DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQA 384 (927)
Q Consensus 311 ~~~~~~-~~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~ 384 (927)
+++.+. ..++++.+++.++..+. |+++.||.+++|++|++++|+... ..+++.++..+++.+.+ +++.|+.
T Consensus 482 ~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~--~~~L~~vl~~L~~~l~~-~~~~v~~ 558 (1023)
T 4hat_C 482 GTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGVQD 558 (1023)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC--HHHHHHHHHHHHHHTTC-SCHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhhc-CCHHHHH
Confidence 998753 67889999998888765 467789999999999999998543 36899999999999988 7899999
Q ss_pred HHHHHHHHhHhcCCCcc-------ccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh--hHHhHHHHHHHHH
Q 002400 385 HAASAVLNFSENCTPDI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ--FQKYYDAVMPYLK 455 (927)
Q Consensus 385 ~a~~al~~l~~~~~~~~-------~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~--~~~~~~~i~~~L~ 455 (927)
.||++|..+++.|+... ..||++.++..+...+...+..-+..++.+++.++...+.. ...+++.+++.+.
T Consensus 559 ~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 559 MACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN 638 (1023)
T ss_dssp HHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHH
Confidence 99999999999887432 25899999999999998888888899999999999998753 4568888888888
Q ss_pred HHHhcccC-----------cchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 002400 456 AILVNAND-----------KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWAR 524 (927)
Q Consensus 456 ~~l~~~~~-----------~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 524 (927)
..|+...+ .+....-...++|.+.++.++| ..|.|++..+++.++++.+. .-+.+.+
T Consensus 639 ~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-~~f~~~~~~i~~~~l~~y~~-----------~s~~i~~ 706 (1023)
T 4hat_C 639 MAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRA-----------VSSMISA 706 (1023)
T ss_dssp HHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 77754211 0111112234556666666666 45666666666655543221 0001111
Q ss_pred HHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHH
Q 002400 525 LCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYAD 604 (927)
Q Consensus 525 l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~ 604 (927)
.+..-|...... + .++ ..---|...++++..++.
T Consensus 707 ~~~~~g~~~~~~-~--------------------------------------------~~r-~~r~ik~~il~l~~~~i~ 740 (1023)
T 4hat_C 707 QVAAEGLIATKT-P--------------------------------------------KVR-GLRTIKKEILKLVETYIS 740 (1023)
T ss_dssp HHHHHCGGGGGS-H--------------------------------------------HHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCchhhcc-H--------------------------------------------HHH-HHHHHHHHHHHHHHHHHh
Confidence 111111111000 0 000 001113334455555544
Q ss_pred Hhccc---ccccHHHHHHHHhhhhcccCcHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 002400 605 ELKEG---FFPWIDQVAPTLVPLLKFYFHEEVRKAA-VSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEAL 680 (927)
Q Consensus 605 ~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vR~~a-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 680 (927)
...+. ...+++.++..++.-.... .+..|... ..++..++...+ ....+.+..+++.+....++.+
T Consensus 741 ~~~~~~~~~~~~~~~l~~~vl~dY~~~-~~~~r~~~vL~l~s~iv~~~~---------~~~~~~~~~il~~vf~~Tl~mi 810 (1023)
T 4hat_C 741 KARNLDDVVKVLVEPLLNAVLEDYMNN-VPDARDAEVLNCMTTVVEKVG---------HMIPQGVILILQSVFECTLDMI 810 (1023)
T ss_dssp HCSCHHHHHHHTHHHHHHHHHHHHHHS-CGGGCCHHHHHHHHHHHHHHG---------GGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHHhC-ChhhccHHHHHHHHHHHHHHH---------HhhhhhhHHHHHHHHHHHHHHH
Confidence 33210 1122333333332211111 22333332 333334444331 1123446666777776667777
Q ss_pred ccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhh----hHHhHHHHHHHHccCCChhHHhhHhH
Q 002400 681 HKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALK----YYDTYLPFLLEACNDKHPDVRQAAVY 756 (927)
Q Consensus 681 ~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~ll~~l~~~l~d~~~~vr~~a~~ 756 (927)
.++. ...++.|..=+..+..+..++...+.. .++.++..++.+++.++.++-..+..
T Consensus 811 ~~~~-------------------~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~ 871 (1023)
T 4hat_C 811 NKDF-------------------TEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQ 871 (1023)
T ss_dssp SSCS-------------------SSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hccc-------------------ccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 6543 356788888888888998888776653 55667777777888998888877776
Q ss_pred HHHHHHhhc---------CCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCC-CC--CHhhHHHH
Q 002400 757 GIGVCAEFG---------GSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRD-SI--DAAQVVPA 824 (927)
Q Consensus 757 ~lg~l~~~~---------~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~-~~--~~~~~l~~ 824 (927)
.+-.+..+. ...++.|+..+++.+..++.|+..+. .-..-+.-+.+|+..... .+ |+
T Consensus 872 ~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~-----~f~~~~~~l~~l~~~~~~~~~~~~~------ 940 (1023)
T 4hat_C 872 IALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKS-----GFSKQALLLMKLISLVYDNKISVPL------ 940 (1023)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGG-----GHHHHHHHHHHHHHHHHTTCCCSCS------
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhh-----hHHHHHHHHHHHHHHHHcCCccccc------
Confidence 666555431 12456889999999999999886432 122223344444432211 11 11
Q ss_pred HHh-cCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHh
Q 002400 825 WLS-CLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQ 899 (927)
Q Consensus 825 ~l~-~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 899 (927)
|=. ..|... .-...+-+++..++.+.-|.+. -.++ ..|...+-... ....+.|..+..++.+++.
T Consensus 941 ~~~~~~~~~~--~n~~~~~~~~~~~l~~~fp~~~------~~qi-~~fv~~l~~~~-~~~~~f~~~lrdfli~~ke 1006 (1023)
T 4hat_C 941 YQEAEVPQGT--SNQVYLSQYLANMLSNAFPHLT------SEQI-ASFLSALTKQC-KDLVVFKGTLRDFLVQIKE 1006 (1023)
T ss_dssp SCTTSSCTTC--CHHHHHHHHHHHHHHHHCTTSC------HHHH-HHHHHHHHHTT-TCHHHHHHHHHHHHHHTTS
T ss_pred CCccccCCCC--chHHHHHHHHHHHHHHhCCCCC------HHHH-HHHHHHHHHcc-CCHHHHHHHHHHHhHHhHh
Confidence 000 011111 1123555677777765555442 2233 33333332221 1246677778788777663
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.9e-33 Score=327.29 Aligned_cols=572 Identities=15% Similarity=0.159 Sum_probs=442.1
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 002400 105 KSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDT 184 (927)
Q Consensus 105 k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~ 184 (927)
-..++..|.++ ++.+|..++..++.++....+...|++++|.|.... ++++.+|..+..+|+.+.+..+.. .+...
T Consensus 12 i~~l~~~l~s~-~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ 87 (588)
T 1b3u_A 12 IAVLIDELRNE-DVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHC 87 (588)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGG
T ss_pred HHHHHHHhhcc-cHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHH
Confidence 35678888886 899999999999999887655567999999998876 677889999999999888765432 25567
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 185 LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 185 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
+++.+...+.+++..||..|+.++..++ ..++. .. +.+.+++.+..+..+++...+..++..+..++...+.
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~-~~~~~----~~---~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~ 159 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAIS-HEHSP----SD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS 159 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHH-TTSCH----HH---HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHH-HHCCH----HH---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH
Confidence 8888888888889999999999999999 65532 11 2233444555555666777888888888888766543
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHH
Q 002400 265 FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAI 344 (927)
Q Consensus 265 ~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 344 (927)
. ..+.++|.+. +.++|+++.+|.+++.+++.+++..+.. .+.+.++|.+...++|+++.||.+|+
T Consensus 160 ~---~~~~l~~~l~----------~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~ 224 (588)
T 1b3u_A 160 A---VKAELRQYFR----------NLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAV 224 (588)
T ss_dssp H---HHHHHHHHHH----------HHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHH
T ss_pred H---HHHHHHHHHH----------HHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3 3455666554 5556789999999999999999877652 34567888899999999999999999
Q ss_pred HHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhH
Q 002400 345 NAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMV 424 (927)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v 424 (927)
.+++.++..++++ .+.+.++|.+...+.| +++.||..++.+|+.++...+++ .+.+.+++.+..++++.++.+
T Consensus 225 ~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v 297 (588)
T 1b3u_A 225 EACVNIAQLLPQE---DLEALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEV 297 (588)
T ss_dssp HHHHHHHHHSCHH---HHHHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHhCCHH---HHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcHHH
Confidence 9999999887653 3556788888888888 89999999999999999876643 245678888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhH--HhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH
Q 002400 425 QEGALTALASVADSSQGQFQ--KYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 502 (927)
Q Consensus 425 ~~~a~~al~~l~~~~~~~~~--~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 502 (927)
|..+..+++.++...+.... ++.+.++|.+...+.+ .++.+|..+..+++.++..+|++.+. +.+++.+..
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d----~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~p~l~~ 370 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD----ANQHVKSALASVIMGLSPILGKDNTI---EHLLPLFLA 370 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC----SCHHHHHHHHTTGGGGHHHHCHHHHH---HHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhHhHHH---HHHHHHHHH
Confidence 99999999999998876543 6788899999888754 46789999999999999998864433 334444444
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCcee
Q 002400 503 LQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRI 582 (927)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (927)
.... .+..+|..++.+++.++...+.+ .+.+.++|.+.+.+. +.+|.
T Consensus 371 ~l~d---~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~-------------------d~~~~--------- 417 (588)
T 1b3u_A 371 QLKD---ECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAE-------------------DAKWR--------- 417 (588)
T ss_dssp HHTC---SCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHT-------------------CSSHH---------
T ss_pred HhCC---CchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhc-------------------CCCch---------
Confidence 3332 23468889999999998877654 245677788777662 12232
Q ss_pred eechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002400 583 GIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNE 662 (927)
Q Consensus 583 ~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 662 (927)
.+..++.+++.++..++..+. .+.+++.+...+.+. ++.||..|+.+++.++...+ .
T Consensus 418 --------vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~------------~ 474 (588)
T 1b3u_A 418 --------VRLAIIEYMPLLAGQLGVEFF--DEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFG------------K 474 (588)
T ss_dssp --------HHHHHHHHHHHHHHHHCGGGC--CHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC------------H
T ss_pred --------HHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhC------------c
Confidence 256788899999998887643 356788888888875 78999999999999987751 1
Q ss_pred HHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHH
Q 002400 663 SYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEA 742 (927)
Q Consensus 663 ~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 742 (927)
..+.+.++|.+...+. +.++..|..++.+++.++..+|... |.+.++|.+++.
T Consensus 475 ---~~~~~~llp~l~~~~~----------------------~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~ 527 (588)
T 1b3u_A 475 ---EWAHATIIPKVLAMSG----------------------DPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRM 527 (588)
T ss_dssp ---HHHHHHTHHHHHHTTT----------------------CSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHG
T ss_pred ---hhHHHHHHHHHHHHhh----------------------CCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhh
Confidence 1234567776665432 3568999999999999999988753 788999999999
Q ss_pred ccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHH
Q 002400 743 CNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKI 808 (927)
Q Consensus 743 l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l 808 (927)
++|+++.||.++++++|.++...|..+. .+.+++.|..++.|+ +..+|++|+.|++.+
T Consensus 528 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~------d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 528 AGDPVANVRFNVAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQ------DVDVKYFAQEALTVL 585 (588)
T ss_dssp GGCSCHHHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCS------SHHHHHHHHHHHHHT
T ss_pred CCCCCchHHHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCC------chhHHHHHHHHHHHh
Confidence 9999999999999999999988765332 245666666665554 467999999999875
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=5.2e-34 Score=322.80 Aligned_cols=417 Identities=16% Similarity=0.203 Sum_probs=346.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcC-CChhHHHHHHHHHHhhcccCcc-----cccccc
Q 002400 21 HFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSS-SLPECRAMSAILLRKHLTRDDS-----TSFIFT 94 (927)
Q Consensus 21 ~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~a~v~Lk~~i~~~~~-----~~~~w~ 94 (927)
++.++|++++|||+++|++||++|+++++.++..|...|++++.++ .++.+|++|+++||+.+.++.. ....|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 5789999999999999999999999988743445889999999884 5899999999999999987611 122378
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC--ChHHHHHHHHHHHHhhh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF--NDKIQESALLILSRMSQ 172 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~--~~~~r~~al~~l~~l~~ 172 (927)
.++++.++.||+.+++.|.++ ++.+ ++++.+++.|++.++|.+.||+++|.+++.++++ ++.+|++++.+|+.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999986 6677 9999999999999988679999999999999988 89999999999999998
Q ss_pred hh-HHHHHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHH
Q 002400 173 FV-SEVLIAHGDTLHEVFSKFLGSN--NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQ 249 (927)
Q Consensus 173 ~~-~~~l~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~ 249 (927)
.. ++.+.++.+.+++.+.+++.++ ++.||..|++++..++ ..+.+...... ..+.+++.+...+.+++++++.
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~-~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vr~ 235 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-EFTKANFDKES---ERHFIMQVVCEATQCPDTRVRV 235 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT-TTTHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH-HHHHHhhhhhH---HHHHHHHHHHHhcCCCCHHHHH
Confidence 76 5566778899999999999998 7999999999999987 54421100011 1233455666666677889999
Q ss_pred HHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc---------------
Q 002400 250 EALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC--------------- 313 (927)
Q Consensus 250 ~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~--------------- 313 (927)
.+++.+..+++..+..+.++++ .+++.++.. +++.+..+|..++..++.+++..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 236 AALQNLVKIMSLYYQYMETYMGPALFAITIEA----------MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH----------HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999999999988888888888 888877633 34567889999999988887642
Q ss_pred ------hHHHHhhHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc
Q 002400 314 ------SKVMIKNLDQVVSMVLNSFQ-------DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP 380 (927)
Q Consensus 314 ------~~~~~~~l~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~ 380 (927)
...+.++++.++|.+++.+. |.++.+|.+|+.+++.++..++. ..++.++|.+...+.+ +++
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~-~~~ 380 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKN-PDW 380 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTC-SSH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcC-CCh
Confidence 12344567888898887774 34678999999999999998873 4567888999999998 899
Q ss_pred hHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh--HHhHHHHHHHHHHHH
Q 002400 381 RVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF--QKYYDAVMPYLKAIL 458 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~--~~~~~~i~~~L~~~l 458 (927)
.+|.+|+.+++.+++.+..+.+.++++.+++.++..+++.++.||..|+++++.++...++.+ .+|++.++|.|...+
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 999999999999999877566788999999999999999999999999999999999988865 478999998887654
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=6.6e-32 Score=315.72 Aligned_cols=577 Identities=15% Similarity=0.135 Sum_probs=417.9
Q ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCcccccc
Q 002400 16 GPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQS-HPDAFALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFI 92 (927)
Q Consensus 16 ~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~-~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~ 92 (927)
+-+...+..++..+.|+|+.+|..|.+.+..+... .|+.....++..+.. +.++++|..++..|.++.....
T Consensus 6 ~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~----- 80 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVG----- 80 (588)
T ss_dssp TTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGT-----
T ss_pred CCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC-----
Confidence 34457789999999999999999999999875432 233222333333332 6678999999999876554310
Q ss_pred ccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 002400 93 FTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQ 172 (927)
Q Consensus 93 w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~ 172 (927)
.++....+-..|...+.+ +++.+|..++.+++.++....+...|+.++|.+.++.++++...|..++.+++.+..
T Consensus 81 ----~~~~~~~ll~~L~~l~~~-~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 81 ----GPEYVHCLLPPLESLATV-EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp ----SGGGGGGGHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred ----cHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 011122233444443344 489999999999999998654434567788988888888899999999999999988
Q ss_pred hhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHH
Q 002400 173 FVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEAL 252 (927)
Q Consensus 173 ~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~ 252 (927)
..++. ..+.+++.+...++|+++.||..|+.+++.++ ..++.. .+.+.+++.+..++.++++.++..++
T Consensus 156 ~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~-~~~~~~-------~~~~~l~~~l~~~~~d~~~~vr~~a~ 224 (588)
T 1b3u_A 156 RVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFA-KVLELD-------NVKSEIIPMFSNLASDEQDSVRLLAV 224 (588)
T ss_dssp TSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH-HTSCHH-------HHHHTHHHHHHHHHTCSCHHHHTTHH
T ss_pred hcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHhcHH-------hHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 77653 45678999999999999999999999999999 665321 12344455555666778888888999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc
Q 002400 253 ELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF 332 (927)
Q Consensus 253 ~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l 332 (927)
..+..+++..+.. ...+.++|.+. .++++++|++|.+++.+|+.++...+.. .+.+.+++.+...+
T Consensus 225 ~~l~~l~~~~~~~--~~~~~~~~~l~----------~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l 290 (588)
T 1b3u_A 225 EACVNIAQLLPQE--DLEALVMPTLR----------QAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLM 290 (588)
T ss_dssp HHHHHHHHHSCHH--HHHHHTHHHHH----------HHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCHH--HHHHHHHHHHH----------HHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHh
Confidence 9998888654331 22344555444 5556789999999999999999876441 24567889999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhchhHH-HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHH
Q 002400 333 QDPHPRVRWAAINAIGQLSTDLGPELQ-TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVS 411 (927)
Q Consensus 333 ~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~ 411 (927)
+|+++.||.+|+++++.++..+++... ..+.+.++|.+...+.| +++.||..++.+|..++..++.+. ..+.+++
T Consensus 291 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~p 366 (588)
T 1b3u_A 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVKSALASVIMGLSPILGKDN---TIEHLLP 366 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHHHHHHTTGGGGHHHHCHHH---HHHHTHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhHhH---HHHHHHH
Confidence 999999999999999999998876532 25788899999999999 899999999999999998776432 3566778
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhh
Q 002400 412 KLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRD 491 (927)
Q Consensus 412 ~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~ 491 (927)
.+...+++.++.||..++.+++.+....+.. .+.+.++|.+...+.+ .++.+|..++++++.++..+|++.+.+
T Consensus 367 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~~~~~ 440 (588)
T 1b3u_A 367 LFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAED----AKWRVRLAIIEYMPLLAGQLGVEFFDE 440 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCGGGCCH
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHcCHHHHHH
Confidence 8888889989999999999999999877653 2456778888877643 567899999999999998888654332
Q ss_pred hHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcch
Q 002400 492 DAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDES 571 (927)
Q Consensus 492 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (927)
.+++.+...... .+..+|..+..+++.++..+|.++
T Consensus 441 ---~l~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~-------------------------------------- 476 (588)
T 1b3u_A 441 ---KLNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEW-------------------------------------- 476 (588)
T ss_dssp ---HHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHCHHH--------------------------------------
T ss_pred ---HHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCchh--------------------------------------
Confidence 344444442221 122355555555555555444321
Q ss_pred hhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHH
Q 002400 572 IQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA 651 (927)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~ 651 (927)
+.+.++|.+..+..+ .++.+|..++.+++.+...+.
T Consensus 477 -----------------------------------------~~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~-- 512 (588)
T 1b3u_A 477 -----------------------------------------AHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCG-- 512 (588)
T ss_dssp -----------------------------------------HHHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHH--
T ss_pred -----------------------------------------HHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcC--
Confidence 233444444444443 367788888888888876542
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhh
Q 002400 652 VEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKY 731 (927)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 731 (927)
...+...++|.+++.+.+ .++.+|..++.+++.++...|....
T Consensus 513 -------------~~~~~~~~~~~l~~~l~d----------------------~~~~Vr~~a~~~l~~l~~~~~~~~~-- 555 (588)
T 1b3u_A 513 -------------QDITTKHMLPTVLRMAGD----------------------PVANVRFNVAKSLQKIGPILDNSTL-- 555 (588)
T ss_dssp -------------HHHHHHHTHHHHHHGGGC----------------------SCHHHHHHHHHHHHHHGGGSCHHHH--
T ss_pred -------------HHHHHHHHHHHHHhhCCC----------------------CCchHHHHHHHHHHHHHHHhchhhh--
Confidence 123456677777766543 3478899999999999988877542
Q ss_pred HHhHHHHHHHHccCCChhHHhhHhHHHHHHH
Q 002400 732 YDTYLPFLLEACNDKHPDVRQAAVYGIGVCA 762 (927)
Q Consensus 732 ~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~ 762 (927)
.+.++|.+...+.|+|++||.+|+.+++.+.
T Consensus 556 ~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 2577888888788999999999999998764
No 17
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2.1e-30 Score=311.32 Aligned_cols=652 Identities=13% Similarity=0.167 Sum_probs=420.7
Q ss_pred CCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCC--ChhHHHHHHHHHHhhcccCccccc
Q 002400 16 GPNPAHFETLISNLMSS--SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSS--LPECRAMSAILLRKHLTRDDSTSF 91 (927)
Q Consensus 16 ~~~~~~l~~~L~~~~s~--d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~--~~~~R~~a~v~Lk~~i~~~~~~~~ 91 (927)
.|+.+++.++++.+++| |++.|++|+++|+++++ .|+.| ..+..++.++. ++.+|++|+.+|++.|. .
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~aw-~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~----- 73 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRS-SSTGW-KICHEIFSEKTKYKPSTRLICLQTLSEKVR-E----- 73 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-H-----
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-ChhHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-h-----
Confidence 47789999999888887 79999999999999999 58865 67777887643 89999999999999996 3
Q ss_pred cccccCHh----HHHHHHHHHHHHHhhc----chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCCh-HHHHH
Q 002400 92 IFTRLAPS----TQANLKSVLLVQLQNE----TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFND-KIQES 162 (927)
Q Consensus 92 ~w~~l~~~----~~~~ik~~Ll~~l~~~----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~-~~r~~ 162 (927)
++++ .+..+|+.+++.+... ..+.||++++.+++.|+..++| ..||++++.+++++++++. .....
T Consensus 74 ----l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~ 148 (980)
T 3ibv_A 74 ----WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNF 148 (980)
T ss_dssp ----CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHH
T ss_pred ----CChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHH
Confidence 7888 9999999999999862 3678999999999999999999 8999999999999876544 33444
Q ss_pred HHHHHHHhhhhhHH------------------HHHHh-----HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC--
Q 002400 163 ALLILSRMSQFVSE------------------VLIAH-----GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP-- 217 (927)
Q Consensus 163 al~~l~~l~~~~~~------------------~l~~~-----~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-- 217 (927)
.+.+|..+.+.+.+ .+... .+.++.++..+....++.++..+++|+..++ ..++
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i-~wi~~~ 227 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWV-SWININ 227 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCHH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-hhcCHH
Confidence 55556544444310 11111 1222222222222234444455555555444 3221
Q ss_pred ------------------------------------Cch-----------------------h---HHhHH---------
Q 002400 218 ------------------------------------SLG-----------------------E---KERFL--------- 226 (927)
Q Consensus 218 ------------------------------------~~~-----------------------~---~~~~~--------- 226 (927)
++. + ...+.
T Consensus 228 ~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 228 LIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 000 0 00000
Q ss_pred --------------------hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc---------CcHHHHHHHHHHHHHH
Q 002400 227 --------------------DLLPLMMRTLTEALNKGNESSAQEALELLIELAAT---------EPRFLRKQLVDVVGSM 277 (927)
Q Consensus 227 --------------------~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~---------~~~~~~~~l~~ll~~l 277 (927)
..+..+++.+..++..+++++...++++|..+.+. -+..+++++..+++.+
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~l 387 (980)
T 3ibv_A 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAI 387 (980)
T ss_dssp HHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHH
Confidence 11112233333344456677777888888887642 1356678888888887
Q ss_pred HHHhh--------c----c----------------------------C----chh----hhhC---CcchhHHHHHHHHH
Q 002400 278 LQVAE--------A----E----------------------------A----VFP----GFLA---APEWQKHHAVLIAL 306 (927)
Q Consensus 278 l~~~~--------~----~----------------------------~----~i~----~~l~---~~~~~~r~aal~al 306 (927)
++-+. + + + .+. +.+. +.+|+.+++++++|
T Consensus 388 i~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l 467 (980)
T 3ibv_A 388 IKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 467 (980)
T ss_dssp HHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 76441 1 1 2 222 2332 35799999999999
Q ss_pred HHHhhhchHHH------HhhHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHH--h
Q 002400 307 AQIAEGCSKVM------IKNLDQVVSMVLNSFQ-----DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVG--A 373 (927)
Q Consensus 307 ~~i~~~~~~~~------~~~l~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~--~ 373 (927)
+.++|++.... .++++.+++.+...++ +++|.||.++++++|++++|+.... ++++.+++.++. .
T Consensus 468 ~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~g 545 (980)
T 3ibv_A 468 YIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRG 545 (980)
T ss_dssp HHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTT
T ss_pred HHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhcccc
Confidence 99999987522 1345666666666543 8899999999999999999996543 688889999998 8
Q ss_pred ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC----C-----------------hhHHHHHHHHH
Q 002400 374 MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG----K-----------------QMVQEGALTAL 432 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~----~-----------------~~v~~~a~~al 432 (927)
+.+ ++++||.+|++++.+|++.+++. +.||++.++..+..++... + ..-+-..++++
T Consensus 546 l~~-~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eai 623 (980)
T 3ibv_A 546 IHN-TNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETV 623 (980)
T ss_dssp TTC-CCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHH
T ss_pred ccC-CChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHH
Confidence 888 88999999999999999999864 6899999999998887631 1 12356689999
Q ss_pred HHHHHHhh---hhhHHhHHHHHHHHHHHHhccc----Cc-chhhHHHHHHHHHHHHHHhhCc--ch---hhhhHHHHHHH
Q 002400 433 ASVADSSQ---GQFQKYYDAVMPYLKAILVNAN----DK-SNRMLRAKSMECISLVGMAVGK--DK---FRDDAKQVMEV 499 (927)
Q Consensus 433 ~~l~~~~~---~~~~~~~~~i~~~L~~~l~~~~----~~-~~~~lr~~a~~~l~~l~~~~~~--~~---~~~~~~~i~~~ 499 (927)
|.++...+ +.-..|++.+++.+...++..- .. +....-...+.+++.+++.... .. +.....++++.
T Consensus 624 g~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~ 703 (980)
T 3ibv_A 624 GVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDE 703 (980)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHH
Confidence 99998865 3456788888888777665421 11 1111112346667877776531 11 22334455555
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCC
Q 002400 500 LMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGD 579 (927)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (927)
++..... +..+..+++.+..+|.++...+|.++.|++|.++..++...+..
T Consensus 704 il~~l~~-~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~---------------------------- 754 (980)
T 3ibv_A 704 IFLILDR-MGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMN---------------------------- 754 (980)
T ss_dssp HHHHHHH-SCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT----------------------------
T ss_pred HHHHHHh-cCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHH----------------------------
Confidence 5443321 23445799999999999999999999999999999999655321
Q ss_pred ceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhh----hhcccC--------cHHHHHHHHHHHHHHHHH
Q 002400 580 KRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP----LLKFYF--------HEEVRKAAVSAMPELLRS 647 (927)
Q Consensus 580 ~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~----~l~~~~--------~~~vR~~a~~~l~~l~~~ 647 (927)
+....+.+++.++...+..+.|.+..+++.++. ++.... ...+|++-...+..++..
T Consensus 755 -----------e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~ 823 (980)
T 3ibv_A 755 -----------ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNK 823 (980)
T ss_dssp -----------THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 124567788999999998888888777766544 333210 122344444444444332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhh-
Q 002400 648 AKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCRE- 726 (927)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~- 726 (927)
-. ++.. ..+.-+..++.++..++....+ -.+...++.|+.++.++++..|.
T Consensus 824 ~~-----~~v~--~s~~n~~~l~~~l~~l~~~a~~---------------------~~d~~~~K~a~~~l~~~v~~~~~~ 875 (980)
T 3ibv_A 824 GF-----GSIL--FTEENQVYFDPLINSILHFANL---------------------VGEPATQKSSIALVSKMVSLWGGK 875 (980)
T ss_dssp TC-----TGGG--GSHHHHTTHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHC----
T ss_pred Cc-----hhhh--cCCcchHHHHHHHHHHHHHhcc---------------------CCChHHHHHHHHHHHHHHHHHCCC
Confidence 00 0000 0011123344444444433221 13467889999999999998743
Q ss_pred h----hhhhHHhHHHHHHHHccCCChhHHhh
Q 002400 727 A----ALKYYDTYLPFLLEACNDKHPDVRQA 753 (927)
Q Consensus 727 ~----~~~~~~~ll~~l~~~l~d~~~~vr~~ 753 (927)
. +..|+=++.|.......+++-+.+.+
T Consensus 876 ~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Da 906 (980)
T 3ibv_A 876 DGIAGFENFTLSLTPLCFEMPVNPNFNTRDG 906 (980)
T ss_dssp ---CCHHHHHHHHHHHHHHGGGC--------
T ss_pred CcchHHHHHHHHHHHHHHHhhcCCCCChhhH
Confidence 2 33332226776666665555444443
No 18
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=6.1e-29 Score=295.67 Aligned_cols=762 Identities=13% Similarity=0.166 Sum_probs=468.6
Q ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
+|.+.+.+++..+++|+++.|++|+++|+++++ +|+.| ..+..++.++.++.+|++|+++|++.|.++ |..+
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw-~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~------W~~L 96 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW-TRVDTILEFSQNMNTKYYGLQILENVIKTR------WKIL 96 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH-HHHTCC---CCSHHHHHHHHHHHHHHHHHT------GGGS
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh------hhhC
Confidence 688999999999999999999999999999998 69865 566777777889999999999999999998 9999
Q ss_pred CHhHHHHHHHHHHHHHhhc--------chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHH
Q 002400 97 APSTQANLKSVLLVQLQNE--------TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILS 168 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~--------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~ 168 (927)
+++.+..||+.+++.+... .++.++++++.+++.|++.++| ..||++++.+++.+++ ++..++.++.+|.
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 9999999999999998751 2477899999999999999999 7899999999998864 4567888999999
Q ss_pred HhhhhhHH----------------HHHHhHHHHHHHHHhhhCC-------------------------------------
Q 002400 169 RMSQFVSE----------------VLIAHGDTLHEVFSKFLGS------------------------------------- 195 (927)
Q Consensus 169 ~l~~~~~~----------------~l~~~~~~l~~~l~~~l~~------------------------------------- 195 (927)
.+.+.+.+ .+...++.+++++..+++.
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~ 254 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIY 254 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHH
Confidence 98877321 1222233333333332221
Q ss_pred ---CCHHHHHHHHHHHHHHHHhhCCCch----------------------------------hHHhHH-------h----
Q 002400 196 ---NNFDLRIAALEATVNFIMNCLPSLG----------------------------------EKERFL-------D---- 227 (927)
Q Consensus 196 ---~~~~vr~~a~~~l~~l~~~~~~~~~----------------------------------~~~~~~-------~---- 227 (927)
+++++|.+|++|+..++....++-. +...+. .
T Consensus 255 ~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~ 334 (1073)
T 3gjx_A 255 KFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE 334 (1073)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 2345666677776666521110000 000000 0
Q ss_pred h----------HHHHHHHH---HHHHhcCChhHHHHHHHHHHHHHcc----C---------------------cHHHHHH
Q 002400 228 L----------LPLMMRTL---TEALNKGNESSAQEALELLIELAAT----E---------------------PRFLRKQ 269 (927)
Q Consensus 228 ~----------~p~ll~~l---~~~l~~~~~~~~~~a~~~l~~l~~~----~---------------------~~~~~~~ 269 (927)
+ .+.+...+ ..+...++.++...++++|..+.+. . ...++++
T Consensus 335 ~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i 414 (1073)
T 3gjx_A 335 HGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTV 414 (1073)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHH
Confidence 0 00011111 1111234666777888999887642 1 0124556
Q ss_pred HHHHHHHHHHHhhc---------c-----------------------------------------CchhhhhC--Ccchh
Q 002400 270 LVDVVGSMLQVAEA---------E-----------------------------------------AVFPGFLA--APEWQ 297 (927)
Q Consensus 270 l~~ll~~ll~~~~~---------~-----------------------------------------~~i~~~l~--~~~~~ 297 (927)
+..+...++..+.. + +.+.+.++ ..+|.
T Consensus 415 ~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~ 494 (1073)
T 3gjx_A 415 LSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWK 494 (1073)
T ss_dssp HHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHH
T ss_pred HHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 66666666544321 1 11122223 24699
Q ss_pred HHHHHHHHHHHHhhhchH-HHHhhHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHH
Q 002400 298 KHHAVLIALAQIAEGCSK-VMIKNLDQVVSMVLNSFQDP-----HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALV 371 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll 371 (927)
.++++++++|+++....+ .-+++++.+++.++.....+ .+.++...++++|++.+|+.... .++..++..++
T Consensus 495 ~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~--~~L~~vl~~L~ 572 (1073)
T 3gjx_A 495 NLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW--KFLKTVVNKLF 572 (1073)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH--HHHHHHHHHHH
Confidence 999999999999865543 35578999999988766433 45678888899999999986543 78999999999
Q ss_pred HhccCCCCchHHHHHHHHHHHhHhcCCCcc-------ccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh-
Q 002400 372 GAMDDFQNPRVQAHAASAVLNFSENCTPDI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF- 443 (927)
Q Consensus 372 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~- 443 (927)
+.+.+ +++.|+.+||.++..+++.|+... ..||+..+++.+.......++.-....+.++|.++...+...
T Consensus 573 ~~m~~-~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 573 EFMHE-THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp HHTTC-CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHhc-CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 99998 899999999999999999997543 357999999999999888888888899999999999998754
Q ss_pred -HHhHHHHHHHHHHHHhccc-----------CcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCC
Q 002400 444 -QKYYDAVMPYLKAILVNAN-----------DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEAD 511 (927)
Q Consensus 444 -~~~~~~i~~~L~~~l~~~~-----------~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 511 (927)
..+++.+++.....|.... |.+...--...++|...++.++| ..|.+++..+...++++.+.
T Consensus 652 ~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g-~~f~~~~~~i~~~~l~~y~~----- 725 (1073)
T 3gjx_A 652 QEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG-HPFVIQLGRIYLDMLNVYKC----- 725 (1073)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcc-hhHHHHHHHHHHHHHHHHHH-----
Confidence 5688888888887776522 11111222456889999999999 67999998887776653221
Q ss_pred CcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHh
Q 002400 512 DPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEE 591 (927)
Q Consensus 512 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (927)
.-+.++.....-|...... + .-..+..+
T Consensus 726 ------~s~~i~~~v~~~g~~~~~~-~--~~~~~r~i------------------------------------------- 753 (1073)
T 3gjx_A 726 ------LSENISAAIQANGEMVTKQ-P--LIRSMRTV------------------------------------------- 753 (1073)
T ss_dssp ------HHHHHHHHHHHHCGGGGSS-H--HHHHHHHH-------------------------------------------
T ss_pred ------HHHHHHHHHHhCCchhhcc-H--HHHHHHHH-------------------------------------------
Confidence 0001111111112111100 0 00000000
Q ss_pred HHHHHHHHHHHHHHhccc---ccccHHHHHHHHhhhhcccCcHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 002400 592 KATACNMLCCYADELKEG---FFPWIDQVAPTLVPLLKFYFHEEVRKA-AVSAMPELLRSAKLAVEKGQSQGRNESYVKQ 667 (927)
Q Consensus 592 k~~a~~~l~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vR~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 667 (927)
|..-++++..++...... ...+++.+++.++.--... .+..|.. ...++..++...+.. ..+.+..
T Consensus 754 k~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~-~p~~r~~evL~l~s~iv~k~~~~---------~~~~~~~ 823 (1073)
T 3gjx_A 754 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGH---------ITAEIPQ 823 (1073)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHS-CGGGCCTHHHHHHHHHHHHHGGG---------TGGGHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHHHhh---------cchhHHH
Confidence 001111111111100000 0011122222211100000 1111221 222333333332110 1122455
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhh----hHHhHHHHHHHHc
Q 002400 668 LTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALK----YYDTYLPFLLEAC 743 (927)
Q Consensus 668 ~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~~~ll~~l~~~l 743 (927)
+++.+....++.+..+. ...++.|..=+..+..+..+|...+.. .++.++..++.++
T Consensus 824 il~~vf~~Tl~mi~~~f-------------------~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~ 884 (1073)
T 3gjx_A 824 IFDAVFECTLNMINKDF-------------------EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAF 884 (1073)
T ss_dssp HHHHHHHHHHHHHSSCS-------------------SSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-------------------ccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHc
Confidence 55566556666666543 356788888888888888888776553 4566777888888
Q ss_pred cCCChhHHhhHhHHHHHHHhhcC-------CCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCC-C
Q 002400 744 NDKHPDVRQAAVYGIGVCAEFGG-------SVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRD-S 815 (927)
Q Consensus 744 ~d~~~~vr~~a~~~lg~l~~~~~-------~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~-~ 815 (927)
+++++++-..+...+-.+..+.. ..+..|+..+++.+..++.|+..+. .-..=+.-+.+|+..... .
T Consensus 885 kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~-----~f~~q~~il~~l~~~~~~~~ 959 (1073)
T 3gjx_A 885 KHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTA-----GLTMHASILAYMFNLVEEGK 959 (1073)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGG-----GHHHHHHHHHHHHHHHTTTC
T ss_pred CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhh-----hhhHHHHHHHHHHHHHHcCC
Confidence 89888887777766666665422 3467789999999999999886432 212223444444443221 1
Q ss_pred CCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 002400 816 IDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLR 895 (927)
Q Consensus 816 ~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 895 (927)
+.. |.| |.. +......+-+++..++.+.-|.+. +.-+..|...+-+.. ......|..+..++.
T Consensus 960 i~~----~l~----~~~-~~~n~~~~~~~~~~~l~~~fp~~~-------~~qi~~fv~~l~~~~-~d~~~f~~~lrDFli 1022 (1073)
T 3gjx_A 960 IST----PLN----PGN-PVNNQMFIQDYVANLLKSAFPHLQ-------DAQVKLFVTGLFSLN-QDIPAFKEHLRDFLV 1022 (1073)
T ss_dssp CSC----SSS----CTT-TTCHHHHHHHHHHHHHHHHCTTSC-------HHHHHHHHHHHHHST-TCHHHHHHHHHHHHH
T ss_pred ccc----ccc----ccC-CCccHHHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 110 000 000 001233455666666655444432 233344443332221 113567777777777
Q ss_pred HHHhh
Q 002400 896 QLQQS 900 (927)
Q Consensus 896 ~~~~~ 900 (927)
+++.-
T Consensus 1023 ~~ke~ 1027 (1073)
T 3gjx_A 1023 QIKEF 1027 (1073)
T ss_dssp HHTSC
T ss_pred HHHHH
Confidence 76643
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.93 E-value=9.8e-22 Score=243.04 Aligned_cols=424 Identities=14% Similarity=0.207 Sum_probs=298.8
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHh-cCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 20 AHFETLISNLMSS--SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLS-SSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 20 ~~l~~~L~~~~s~--d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~-~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
+++.++|+.+++| |++.|++|+++|+++++ +|+.| ..+..++. .+.++.+|++|+++||+.+.++ |..+
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~-~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~------W~~l 82 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPIC-VPCGLRLAEKTQVAIVRHFGLQILEHVVKFR------WNGM 82 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTH-HHHHHHHTSTTSCHHHHHHHHHHHHHHHHHS------GGGS
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHH-HHHHHHHHccCCCHHHHHHHHHHHHHHHHHh------cccC
Confidence 5688999999988 77889999999999988 47655 45555555 4778999999999999999998 9999
Q ss_pred CHhHHHHHHHHHHHHHhhc------chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHh
Q 002400 97 APSTQANLKSVLLVQLQNE------TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRM 170 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l 170 (927)
+++.+..||+.+++.+.+. .++.||++++.+++.|++.++| +.||++++.+++++++ ++..++.++.+|..+
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999864 4689999999999999999999 8999999999998876 567789999999999
Q ss_pred hhhhHH--------------HHHHhHHHHHH-------------------------------------------------
Q 002400 171 SQFVSE--------------VLIAHGDTLHE------------------------------------------------- 187 (927)
Q Consensus 171 ~~~~~~--------------~l~~~~~~l~~------------------------------------------------- 187 (927)
++.... .+..+++.+++
T Consensus 161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~ 240 (1204)
T 3a6p_A 161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM 240 (1204)
T ss_dssp HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH
Confidence 876321 11111222222
Q ss_pred ------------HHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH-------------------------------H-
Q 002400 188 ------------VFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK-------------------------------E- 223 (927)
Q Consensus 188 ------------~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-------------------------------~- 223 (927)
.+...+. ++++|..|++||..++..... ..+. .
T Consensus 241 ~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~-~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 241 SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGK-LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSC-HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCC-hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 2222222 245677888888887722211 0000 0
Q ss_pred ---hHHhh-----------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC----cHHHHHHHHHH
Q 002400 224 ---RFLDL-----------------------LPLMMRTLTEALNKGNESSAQEALELLIELAATE----PRFLRKQLVDV 273 (927)
Q Consensus 224 ---~~~~~-----------------------~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~l~~l 273 (927)
.+..+ +..+++.+..+...++.++...++++|..+.+.. ...+.++++.+
T Consensus 318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~L 397 (1204)
T 3a6p_A 318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKY 397 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 00000 1122333333444556677778889999887653 34567788888
Q ss_pred HHHH---HHHh---h-------------cc------------------------------------CchhhhhC------
Q 002400 274 VGSM---LQVA---E-------------AE------------------------------------AVFPGFLA------ 292 (927)
Q Consensus 274 l~~l---l~~~---~-------------~~------------------------------------~~i~~~l~------ 292 (927)
++.+ +.-+ + .+ +++.+.+.
T Consensus 398 l~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~ 477 (1204)
T 3a6p_A 398 LRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAG 477 (1204)
T ss_dssp HHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccc
Confidence 7777 2111 0 00 11211111
Q ss_pred -------------------CcchhHHHHHHHHHHHHhhhchHHH-Hhh-----HHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002400 293 -------------------APEWQKHHAVLIALAQIAEGCSKVM-IKN-----LDQVVSMVLNSFQDPHPRVRWAAINAI 347 (927)
Q Consensus 293 -------------------~~~~~~r~aal~al~~i~~~~~~~~-~~~-----l~~l~~~l~~~l~d~~~~vr~~a~~~l 347 (927)
++.|...++....++++++++.+.. .++ ++.+++.+.. ++..+|.+|.+++.++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~l 556 (1204)
T 3a6p_A 478 SVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILSCVLTNV 556 (1204)
T ss_dssp -------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHHHHHHHH
T ss_pred ccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHHHHHHHH
Confidence 3468888999999999988875432 122 3444444333 2446899999999999
Q ss_pred HHhHhhhchhHHHHhHhhHHHHHHHhccCC-----------CCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHH
Q 002400 348 GQLSTDLGPELQTQFHHRLLPALVGAMDDF-----------QNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVL 416 (927)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~il~~ll~~l~~~-----------~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 416 (927)
|+++.++... ..++..++..++..+.+. .+.++|.+|+.++..+++.++ +.+.||++.+...+..+
T Consensus 557 ~~l~~~~~~~--p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~ 633 (1204)
T 3a6p_A 557 SALFPFVTYR--PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQL 633 (1204)
T ss_dssp HHHGGGGGTC--GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcC--chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 9999988643 367788888888776551 123799999999999999997 45779999999999998
Q ss_pred hcCCC---hhHHHHHHHHHHHHHHHhhh--hhHHhHHHHHHHHHHHHhc
Q 002400 417 LQNGK---QMVQEGALTALASVADSSQG--QFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 417 l~~~~---~~v~~~a~~al~~l~~~~~~--~~~~~~~~i~~~L~~~l~~ 460 (927)
+..+. ..-+.....+++.++...++ ....|+..+++.+.+.|..
T Consensus 634 l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 634 LSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 87554 56666777888888655432 3456789999998888764
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.86 E-value=3.5e-17 Score=188.03 Aligned_cols=680 Identities=13% Similarity=0.098 Sum_probs=436.3
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHHHhhChh-------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcc-cc
Q 002400 21 HFETLISNL--MSSSNEHRSHAEVLLSHLRQSHPD-------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDS-TS 90 (927)
Q Consensus 21 ~l~~~L~~~--~s~d~~~r~~Ae~~l~~~~~~~p~-------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~-~~ 90 (927)
.+.+.++-+ .+.|.+.|++|-.-|--+.+.+.+ .-+..|..++.+..++++.-.|.-.|-...+++.. ..
T Consensus 7 kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~ 86 (810)
T 3now_A 7 KVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTK 86 (810)
T ss_dssp HHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHH
Confidence 344444444 356788888888665433221111 02456777777568899998888888888877611 11
Q ss_pred ccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC-----------------CccchHHHHHHHhc
Q 002400 91 FIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG-----------------DWPELIPFIFQCLV 153 (927)
Q Consensus 91 ~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~-----------------~w~~ll~~l~~~l~ 153 (927)
..|..+. ...+++.+.++ ++.+..+++.++..+.......+ ....++..|+..+.
T Consensus 87 ~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (810)
T 3now_A 87 GVLTELG-------VPWFMRVLDQK-HENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSIT 158 (810)
T ss_dssp HHHHHSC-------HHHHHHHHHCC-STTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHcC-------HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhh
Confidence 1122222 23577778875 88888888888877766432110 12345666667676
Q ss_pred CC--ChHHHHHHHHHHHHhhhhh----HHHHHH--hHHHHHHHHHhhhC----CC---CHHHHHHHHHHHHHHHHhhCCC
Q 002400 154 TF--NDKIQESALLILSRMSQFV----SEVLIA--HGDTLHEVFSKFLG----SN---NFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 154 s~--~~~~r~~al~~l~~l~~~~----~~~l~~--~~~~l~~~l~~~l~----~~---~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
+. +...|..++.+|..-+.+- ++.+.. -+..++.+..+.-. +. ..++|..|.-++..+. +.+..
T Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~-~~~~~ 237 (810)
T 3now_A 159 DRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIY-ENMYY 237 (810)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHH-HTCCS
T ss_pred ccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHH-HHhcc
Confidence 64 4578999999988766332 222221 12223332222111 01 4679999999999999 77755
Q ss_pred chhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH--HHHHHHHHHHhhccCchhhhhCCcch
Q 002400 219 LGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL--VDVVGSMLQVAEAEAVFPGFLAAPEW 296 (927)
Q Consensus 219 ~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~ll~~ll~~~~~~~~i~~~l~~~~~ 296 (927)
...++.|...+..+++.. +..++.+....++.++..+....+..-...+ ...++.++ .++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li----------~Ll~s~~~ 304 (810)
T 3now_A 238 DEAKARFTDQIDEYIKDK---LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL----------AMATTDDE 304 (810)
T ss_dssp HHHHHHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH----------HHHHSSCH
T ss_pred chhHHHHHHHHHHHHHHH---hccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH----------HHhCCCCH
Confidence 555677777776666543 3456666777888888888876654433222 24455555 44557788
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc-----hhHHHHhHhhHHHHHH
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG-----PELQTQFHHRLLPALV 371 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-----~~~~~~~~~~il~~ll 371 (927)
..++.|+++++.++.. .+.-.-....-+|.+...+++.++.+|.-|+++|.+++...+ +.+...-...+++.+.
T Consensus 305 ~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~ 383 (810)
T 3now_A 305 LQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACR 383 (810)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHH
Confidence 9999999999998776 332222223334888888888889999999999999975332 1121122467788899
Q ss_pred HhccCCC--CchHHHHHHHHHHHhHhcCCCccccCc--hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh-----
Q 002400 372 GAMDDFQ--NPRVQAHAASAVLNFSENCTPDILTPY--LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ----- 442 (927)
Q Consensus 372 ~~l~~~~--~~~v~~~a~~al~~l~~~~~~~~~~~~--l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~----- 442 (927)
+.|.+ + ++.++..|+++|..++...... ... -...++.|+.++++.+..++..+++++++++......
T Consensus 384 ~lL~~-~~~d~~v~~~AveaLayLS~~~~vk--~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~ 460 (810)
T 3now_A 384 RFLIK-PGKDKDIRRWAADGLAYLTLDAECK--EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPE 460 (810)
T ss_dssp HHHHC-SSCCSSHHHHHHHHHHHHTTSHHHH--HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCS
T ss_pred HHhcC-CCCCHHHHHHHHHHHHHHhCCcHHH--HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHH
Confidence 99888 5 7899999999999997543211 111 1468888999999888999999999999998733100
Q ss_pred ---h----------------HHhH---------HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhH-
Q 002400 443 ---F----------------QKYY---------DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDA- 493 (927)
Q Consensus 443 ---~----------------~~~~---------~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~- 493 (927)
+ .++. ...+|.|..++.. ....+|..|..+++.++.. +.....+
T Consensus 461 l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s----~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv 533 (810)
T 3now_A 461 MIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT----ESHNSQELIARVLNAVCGL---KELRGKVV 533 (810)
T ss_dssp CGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC----CCHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 0 0011 1468888888865 3467899999999999732 1122221
Q ss_pred -HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcccc--cc-chhhhHHHHHHHcccCCCccccCCCCCCCCCCCc
Q 002400 494 -KQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEF--IP-YMSVVMPPLLQSAQLKPDVIITSADSDVDIDDED 569 (927)
Q Consensus 494 -~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 569 (927)
...++.++.+...+ +...+..+..++++++....+.. .. ....++|.|++.+..+.+
T Consensus 534 ~~Gaip~Lv~LL~s~---~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~---------------- 594 (810)
T 3now_A 534 QEGGVKALLRMALEG---TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT---------------- 594 (810)
T ss_dssp HTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSC----------------
T ss_pred HCCCHHHHHHHHccC---CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCc----------------
Confidence 12455566544432 23467888889999987643332 11 123578899888853210
Q ss_pred chhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccH-HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 002400 570 ESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648 (927)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~ 648 (927)
...+..|+.+|..++..-...-...+ ...++.+..++.+. ++.||+.|+.+++.++..-
T Consensus 595 -------------------~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 595 -------------------ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp -------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSH
T ss_pred -------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh
Confidence 01134577777777643211000011 13466677777764 7899999999999996431
Q ss_pred HHHHHhcCCCCCCHHHHHHHH--HHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhh
Q 002400 649 KLAVEKGQSQGRNESYVKQLT--DYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCRE 726 (927)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~--~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 726 (927)
+....+. ...++.|+..+..+ +...|..|.++|+.+....+.
T Consensus 655 --------------~~~~~~v~~~g~l~~Lv~LL~s~----------------------d~~vq~~Aa~ALanLt~~s~~ 698 (810)
T 3now_A 655 --------------DVIKMFEGNNDRVKFLALLCEDE----------------------DEETATACAGALAIITSVSVK 698 (810)
T ss_dssp --------------HHHHHHHSSSSHHHHHHHGGGCS----------------------SHHHHHHHHHHHHHHHHHCHH
T ss_pred --------------HHHHHHHhccCcHHHHHHHhcCC----------------------CHHHHHHHHHHHHHHhCCCHH
Confidence 1122222 13566666655443 478899999999999987655
Q ss_pred hhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHH--HHHHHHHHHhhcCCCCCCchhhhHHHHHH
Q 002400 727 AALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLV--GEALSRLDFVIRHPNALHSDNVMAYDNAV 802 (927)
Q Consensus 727 ~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~il~~L~~~l~~~~~~~~~~~~~~~na~ 802 (927)
.....+ ...+|.|+..+.+++..+|..|+|+++.+...+++ ...++ ..+++.|..++..++.+ +..+++.|.
T Consensus 699 ~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e-~~~~l~e~G~i~~L~~LL~~~d~~---~~~i~e~Al 774 (810)
T 3now_A 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE-IAKKLFETDIMELLSGLGQLPDDT---RAKAREVAT 774 (810)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHTSTHHHHHTTSCCCTTST---THHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHhCcccC---cHHHHHHHH
Confidence 555544 36999999999999999999999999999885443 23333 26788888888655322 466888999
Q ss_pred HHHHHHHhhc
Q 002400 803 SALGKICQFH 812 (927)
Q Consensus 803 ~al~~l~~~~ 812 (927)
.++..++.+.
T Consensus 775 ~aL~~ll~~g 784 (810)
T 3now_A 775 QCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCC
Confidence 9999888754
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.86 E-value=1.4e-19 Score=204.18 Aligned_cols=422 Identities=14% Similarity=0.114 Sum_probs=288.0
Q ss_pred hcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH-----
Q 002400 241 NKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK----- 315 (927)
Q Consensus 241 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~----- 315 (927)
.+++.+++..|-+.+.++.... .+.++..+++++.+. +.++.+|..|...|.........
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~--------~~~~~vR~~a~~~Lk~~i~~~~~~~~~~ 75 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANP--------GNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHhccccchHHHHH
Confidence 3567888888888887755321 223334444332221 24688999999999988754210
Q ss_pred ------HH-HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC--CchHHHHH
Q 002400 316 ------VM-IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ--NPRVQAHA 386 (927)
Q Consensus 316 ------~~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~--~~~v~~~a 386 (927)
.+ .+....+-..++..+.++++.+ ..++.+++.++....+. ..++.++|.++..+.+ + ++.+|..+
T Consensus 76 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~-~~~~~~~r~~a 150 (462)
T 1ibr_B 76 YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTN-PNSTEHMKEST 150 (462)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHC-TTCCHHHHHHH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhcc-CCCCHHHHHHH
Confidence 01 1223445667788888888899 99999999999865442 3568899999999998 7 89999999
Q ss_pred HHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHhhhhhHH--hHHHHHHHHHHHHhccc
Q 002400 387 ASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQGQFQK--YYDAVMPYLKAILVNAN 462 (927)
Q Consensus 387 ~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~--~~~v~~~a~~al~~l~~~~~~~~~~--~~~~i~~~L~~~l~~~~ 462 (927)
+.+|..+++...++.+.+|.+.+++.+...+++. +..+|..++.+++.++...++.+.. +.+.+++.+...+.
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--- 227 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--- 227 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC---
Confidence 9999999998755667899999999999999988 6899999999999876554433221 11224555554432
Q ss_pred CcchhhHHHHHHHHHHHHHHhhCcchhhhhHH-HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhH
Q 002400 463 DKSNRMLRAKSMECISLVGMAVGKDKFRDDAK-QVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVM 541 (927)
Q Consensus 463 ~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~ 541 (927)
+.+..+|..++++++.++...+ +.|.++.. .+++.++..... .++.++..++.++..++.....
T Consensus 228 -~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~---------- 292 (462)
T 1ibr_B 228 -CPDTRVRVAALQNLVKIMSLYY-QYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMD---------- 292 (462)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHCG-GGCTTTTTTTHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHHHH----------
T ss_pred -CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHH----------
Confidence 2456799999999999998876 67888888 888877664332 3456788888888888765310
Q ss_pred HHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 002400 542 PPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTL 621 (927)
Q Consensus 542 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l 621 (927)
+ .....+. +++..... .. ...-+.+|++.++|.+
T Consensus 293 --~-~~~~~~~------------~~~~~~~~----------~~---------------------~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 293 --L-AIEASEA------------AEQGRPPE----------HT---------------------SKFYAKGALQYLVPIL 326 (462)
T ss_dssp --H-HHHHCCT------------TCSSSCSS----------CC---------------------CCCHHHHHHHHHHHHH
T ss_pred --H-HHhcccc------------cccCCCcc----------ch---------------------hHHHHHHHhhhccHHH
Confidence 0 0000000 00000000 00 0000122344555555
Q ss_pred hhhhcc------cCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 002400 622 VPLLKF------YFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDA 695 (927)
Q Consensus 622 ~~~l~~------~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~ 695 (927)
++.+.+ ..++.+|..|..+++.+.... + ......+++.+.+.+.+
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~----------~------~~~~~~~~~~l~~~l~~------------- 377 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----------E------DDIVPHVLPFIKEHIKN------------- 377 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----------T------TTHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhc----------c------HHHHHHHHHHHHHHhcC-------------
Confidence 444432 124578888888888887653 1 12344555655555543
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHhh-hhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCc--HHH
Q 002400 696 LNESIQGKDKTAEERRIAICIFDDVMEHCR-EAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVF--KPL 772 (927)
Q Consensus 696 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~--~~~ 772 (927)
.+|..|..|+.++|.+++.++ ..+.++++.++|.++..+.|+++.||.+|++++|.++...+..+ .+|
T Consensus 378 ---------~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 378 ---------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp ---------SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred ---------CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 459999999999999998665 44567889999999999999999999999999999999877654 588
Q ss_pred HHHHHHHHHHhh
Q 002400 773 VGEALSRLDFVI 784 (927)
Q Consensus 773 ~~~il~~L~~~l 784 (927)
++.+++.|...+
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999888665
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=4.6e-17 Score=199.48 Aligned_cols=625 Identities=11% Similarity=0.102 Sum_probs=382.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhh-----ChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccc--cC
Q 002400 25 LISNLMSSSNEHRSHAEVLLSHLRQS-----HPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTR--LA 97 (927)
Q Consensus 25 ~L~~~~s~d~~~r~~Ae~~l~~~~~~-----~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~--l~ 97 (927)
+|+.+.++++.+|.++-..+..+... .|+ +++.|++.+. +.++..+..+...|...+.+ |.. -+
T Consensus 90 ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~-ll~~L~~~l~-s~~~~~~~~aL~~l~~i~~~-------~~~~~~~ 160 (960)
T 1wa5_C 90 IVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT-LLSDLASRLS-NDDMVTNKGVLTVAHSIFKR-------WRPLFRS 160 (960)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTT-HHHHHHTTCC-SSCTTHHHHHHHHHHHHHGG-------GTTSCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhH-HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH-------HHHhhcC
Confidence 35555566688999998888775443 354 5666766664 34566666666667766544 432 23
Q ss_pred HhHHHHHH-------HHHHHH-------Hhhcchh--------hHHHHHHHHHHHHHhccCCC---CCccchHHHHHHHh
Q 002400 98 PSTQANLK-------SVLLVQ-------LQNETNK--------SIIKKICDAVSELAASVLPD---GDWPELIPFIFQCL 152 (927)
Q Consensus 98 ~~~~~~ik-------~~Ll~~-------l~~~~~~--------~vr~~~~~~i~~ia~~~~~~---~~w~~ll~~l~~~l 152 (927)
++.+..++ ..+++. +.+.... .+++.++.++..+...+.|. ...+.+++.+.+.+
T Consensus 161 ~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 240 (960)
T 1wa5_C 161 DELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYL 240 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 33333332 112222 2221111 22333445554444444442 12233344444444
Q ss_pred cC------CC---------hHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhC-----CCCHHHHHHHHHHHHHHH
Q 002400 153 VT------FN---------DKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLG-----SNNFDLRIAALEATVNFI 212 (927)
Q Consensus 153 ~s------~~---------~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~-----~~~~~vr~~a~~~l~~l~ 212 (927)
.. .+ ..+|..++.+|..+.+.+++.|.++++.+++.+.+.+. ..+..++..++..|..++
T Consensus 241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 22 11 24678899999999999999999999999998888775 237789999999999988
Q ss_pred HhhCCCchhHHhHH--hhHHHHH-HHHHHHHh----c-----CC--------------hhHHHHHHHHHHHHHccCcHHH
Q 002400 213 MNCLPSLGEKERFL--DLLPLMM-RTLTEALN----K-----GN--------------ESSAQEALELLIELAATEPRFL 266 (927)
Q Consensus 213 ~~~~~~~~~~~~~~--~~~p~ll-~~l~~~l~----~-----~~--------------~~~~~~a~~~l~~l~~~~~~~~ 266 (927)
+. +..+..+. ++++.++ ..+...+. + +| +..+..+..++..++...++.+
T Consensus 321 -~~---~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v 396 (960)
T 1wa5_C 321 -RI---PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV 396 (960)
T ss_dssp -TS---HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred -Cc---HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH
Confidence 31 11123333 5556555 34443331 0 01 1244566677777776544222
Q ss_pred HHHHHHHHHHHH----------------------HHhhc---------------c--Cchh----hhhCCc---chhHHH
Q 002400 267 RKQLVDVVGSML----------------------QVAEA---------------E--AVFP----GFLAAP---EWQKHH 300 (927)
Q Consensus 267 ~~~l~~ll~~ll----------------------~~~~~---------------~--~~i~----~~l~~~---~~~~r~ 300 (927)
-+.+-..+..++ .+++. + +++. ..++++ ++.+|.
T Consensus 397 ~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~ 476 (960)
T 1wa5_C 397 TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV 476 (960)
T ss_dssp HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence 111111111111 01100 0 1111 223455 789999
Q ss_pred HHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhh----------chhHHHHhHhhHHHHH
Q 002400 301 AVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL----------GPELQTQFHHRLLPAL 370 (927)
Q Consensus 301 aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----------~~~~~~~~~~~il~~l 370 (927)
+|++++|.+++.... .++..+++.++.+|.|+++.||.+|++++..+++.. ..+...+|++.+++.+
T Consensus 477 ~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L 553 (960)
T 1wa5_C 477 DAIKYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL 553 (960)
T ss_dssp HHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHH
Confidence 999999999987643 678899999999999999999999999999998742 1222368899999999
Q ss_pred HHhccCCCC-----chHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcC-----CChhHHHHHHHHHHHHHHHhh
Q 002400 371 VGAMDDFQN-----PRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQN-----GKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 371 l~~l~~~~~-----~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~-----~~~~v~~~a~~al~~l~~~~~ 440 (927)
+..++. .. ......+..++..+++..+. .+.||.+.+++.+...+.. .++..+..++.+|+.++...+
T Consensus 554 ~~ll~~-~~~~~~~~~~~e~l~~al~~vv~~~~~-~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 554 IALILK-HGSSPEKLAENEFLMRSIFRVLQTSED-SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp HHHHHT-TCCCHHHHTSCHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHh-ccCCCCcccccHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 998887 31 12446788999999888874 4679999999998887753 245677789999999998844
Q ss_pred -hhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHH--HHhccCCCCCCcchHH
Q 002400 441 -GQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM--SLQGSQMEADDPTTSY 517 (927)
Q Consensus 441 -~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~ 517 (927)
+.+.++.+.++|.+...++... ..+...+++.++.+.... ..+.++...+++.+. ..+.. . .....
T Consensus 632 ~~~~~~~~~~~~p~~~~iL~~~~----~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~ 700 (960)
T 1wa5_C 632 RQNLPLLVDSMMPTFLTVFSEDI----QEFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWEL----K-GNIPA 700 (960)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTC----TTTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCC----T-TTHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhh----HhhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcC----C-CCchh
Confidence 4677899999999999987632 235666788888777665 457777777777665 33221 1 13344
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHH
Q 002400 518 MLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACN 597 (927)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~ 597 (927)
+..++..+....++.|.. +..++..+.+.+..+ . .+..|+.
T Consensus 701 ~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~----------------------------------~----~~~~a~~ 741 (960)
T 1wa5_C 701 VTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK----------------------------------A----YEVHGFD 741 (960)
T ss_dssp HHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT----------------------------------T----THHHHHH
T ss_pred HHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC----------------------------------c----ccchHHH
Confidence 555555555544444443 233333322222111 0 1256889
Q ss_pred HHHHHHHHhccc-ccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----
Q 002400 598 MLCCYADELKEG-FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDY----- 671 (927)
Q Consensus 598 ~l~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 671 (927)
+++.++..+++. |.||++.+++.+++.+.....+..++..+..+..++... +++......+.
T Consensus 742 ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~i~~~~ 809 (960)
T 1wa5_C 742 LLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKL------------GSDFLIHFIDEVQDGL 809 (960)
T ss_dssp HHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH------------CHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHc------------CHHHHHHHHHhcchhH
Confidence 999999999998 999999999999999887656777766666665554322 11111111110
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHh---hhhhhhhHHhHHHHHHHHccCC
Q 002400 672 IIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHC---REAALKYYDTYLPFLLEACNDK 746 (927)
Q Consensus 672 il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~~~ll~~l~~~l~d~ 746 (927)
+...+.+. .+..+..+ .....|..++..++.++... ++.+.+.++.++..++..+...
T Consensus 810 f~~~~~~~------------w~~~~~~~-----~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 870 (960)
T 1wa5_C 810 FQQIWGNF------------IITTLPTI-----GNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQ 870 (960)
T ss_dssp HHHHHHHT------------HHHHGGGC-----CSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH------------hccchhhc-----cCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhCC
Confidence 00000000 01111111 23678899988888888876 5555567777777777766643
No 23
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.86 E-value=3.4e-16 Score=193.08 Aligned_cols=732 Identities=10% Similarity=0.049 Sum_probs=448.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC-
Q 002400 58 NLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL- 136 (927)
Q Consensus 58 ~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~- 136 (927)
.+++.+..+.+++.|+.|-..|++.-.. ++.|. .++..|.+..+..+|..++..+....+..+
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~~~~----p~~~~------------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~ 91 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQAQVS----PQAWH------------FSWQLLQPDKVPEIQYFGASALHIKISRYWS 91 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHS----TTHHH------------HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcC----HHHHH------------HHHHHhcCCCchHHHHHHHHHHHHHHHhCHH
Confidence 3344433367889999998888774332 12343 233444444578899999999988777543
Q ss_pred --CCCCccchHHHHHHHhcC---CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC-----CCHHHHHHHHH
Q 002400 137 --PDGDWPELIPFIFQCLVT---FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS-----NNFDLRIAALE 206 (927)
Q Consensus 137 --~~~~w~~ll~~l~~~l~s---~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~-----~~~~vr~~a~~ 206 (927)
|.+....+-..+++.+.+ .+..+|.....++..++..... ...+.+++-+.+.+++ +++..+..++.
T Consensus 92 ~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p---~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 168 (963)
T 2x19_B 92 DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP---DAWPCAVADMVRLFQAEDSPVDGQGRCLALLE 168 (963)
T ss_dssp GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT---TTSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc---cccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 222333444555555543 3577888888888888765321 1245566666666665 35667788888
Q ss_pred HHHHHHHhhCCCc---hh----HHhHHhhHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Q 002400 207 ATVNFIMNCLPSL---GE----KERFLDLLPLMMRTLTEALNKGNE--SSAQEALELLIELAATEPRFLRKQLVDVVGSM 277 (927)
Q Consensus 207 ~l~~l~~~~~~~~---~~----~~~~~~~~p~ll~~l~~~l~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~l 277 (927)
.|..+..+..... .. ...+...+|.+++.+..++..... .....+++++........... ....+++.+
T Consensus 169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l 246 (963)
T 2x19_B 169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAA 246 (963)
T ss_dssp HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHH
T ss_pred HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHH
Confidence 8888872222110 01 122345677888877777754322 245555555543332111110 114455555
Q ss_pred HHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHHHhc-------cCCCCHHHHHHHHHHHHH
Q 002400 278 LQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK-VMIKNLDQVVSMVLNS-------FQDPHPRVRWAAINAIGQ 349 (927)
Q Consensus 278 l~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~-~~~~~l~~l~~~l~~~-------l~d~~~~vr~~a~~~l~~ 349 (927)
+ +.+ .+|..|.+|+.++..+..+... ...+.+..+++.++.. +.+.+.......+..+..
T Consensus 247 ~----------~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~ 314 (963)
T 2x19_B 247 F----------AAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVA 314 (963)
T ss_dssp H----------HHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----------HHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 223 3588999999999999875321 1123344444443332 223344555566677777
Q ss_pred hHhhhchhHH-----HHhHhhHHHHHHHhccCC----CCchHHHHHHHHHHHhHhcCC----------CccccCchHHHH
Q 002400 350 LSTDLGPELQ-----TQFHHRLLPALVGAMDDF----QNPRVQAHAASAVLNFSENCT----------PDILTPYLDGIV 410 (927)
Q Consensus 350 ~~~~~~~~~~-----~~~~~~il~~ll~~l~~~----~~~~v~~~a~~al~~l~~~~~----------~~~~~~~l~~l~ 410 (927)
+++.....+. ...+..+++.++....+. .+..+...++..+..+++... ...+.|++..++
T Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 394 (963)
T 2x19_B 315 LGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLV 394 (963)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 7654332221 245567777777766541 346677777777777776321 123456777788
Q ss_pred HHHHHHhcCCCh---------------hHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHH
Q 002400 411 SKLLVLLQNGKQ---------------MVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSME 475 (927)
Q Consensus 411 ~~L~~~l~~~~~---------------~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~ 475 (927)
+.++..+..+.. ..|..+..++..++...+.. .++.+++.+...++...+..++..+..++-
T Consensus 395 ~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l~~~~~~l~~~l~~~~~~~~w~~~eaal~ 471 (963)
T 2x19_B 395 DVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471 (963)
T ss_dssp HHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 887777643221 12445555666666555533 445555666665543223356788888999
Q ss_pred HHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCcc
Q 002400 476 CISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVI 555 (927)
Q Consensus 476 ~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~ 555 (927)
+++.++..+.. ...++++.+++.+..+.. ....++..++.++++++.-++.+. .|++.+++.+++.+.. +.
T Consensus 472 al~~i~~~~~~-~~~~~l~~l~~~l~~l~~----~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~~-~~-- 542 (963)
T 2x19_B 472 GFQSIAETIDV-NYSDVVPGLIGLIPRISI----SNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLHALGN-PE-- 542 (963)
T ss_dssp HHHHHTTSCCS-SCCSHHHHHHHHGGGSCC----CSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHHHTTC-GG--
T ss_pred HHHHHHhhcCc-hhhHHHHHHHHHHHhCCC----CcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHhCC-ch--
Confidence 99999987763 445677777775543321 122377888888999888766543 7899999999998832 11
Q ss_pred ccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcc-cCcHHHH
Q 002400 556 ITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKF-YFHEEVR 634 (927)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vR 634 (927)
-+..|+.++..++..++..+.||+++++..+..++.. ..+...|
T Consensus 543 -----------------------------------V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~ 587 (963)
T 2x19_B 543 -----------------------------------LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQC 587 (963)
T ss_dssp -----------------------------------GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHH
Confidence 1357899999999999999999999999999888874 2467889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHhhcCCCCChhhH
Q 002400 635 KAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHK----EPEIDICASMLDALNESIQGKDKTAEER 710 (927)
Q Consensus 635 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~----e~d~~v~~~~l~~l~~~~~~~~~~~~~r 710 (927)
.....+++.++.+. ..+...+++..+++.+...+.. ..+++.. ..+
T Consensus 588 ~~~~eai~~i~~~~------------~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~------------------~~~ 637 (963)
T 2x19_B 588 MWLMQALGFLLSAL------------QVEEILKNLHSLISPYIQQLEKLAEEIPNPSNK------------------LAI 637 (963)
T ss_dssp HHHHHHHHHHHTTS------------CHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHH------------------HHH
T ss_pred HHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH------------------HHH
Confidence 99999999997542 1233566777777766665532 1111111 112
Q ss_pred HHHHHHHHHHHHHhhh----------------------hhhhhHHhHHHHHHHHcc--CCChhHHhhHhHHHHHHHhhcC
Q 002400 711 RIAICIFDDVMEHCRE----------------------AALKYYDTYLPFLLEACN--DKHPDVRQAAVYGIGVCAEFGG 766 (927)
Q Consensus 711 ~~a~~~l~~l~~~~~~----------------------~~~~~~~~ll~~l~~~l~--d~~~~vr~~a~~~lg~l~~~~~ 766 (927)
...+.+++.++...+. .+.++.+.++|.+...+. ..++.+++.++.+++.++...+
T Consensus 638 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 638 VHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 2345555555555432 245577888888877765 3567899999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhh--cCCCC--CHhhHHHHHHhc----C--CCCCcHH
Q 002400 767 SVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQF--HRDSI--DAAQVVPAWLSC----L--PLKGDLI 836 (927)
Q Consensus 767 ~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~--~~~~~--~~~~~l~~~l~~----L--p~~~d~~ 836 (927)
+.+.||++.+++.+........ .. ..+..++.++.. ..+.. .++.++..++.. + ...++.+
T Consensus 718 ~~~~~~l~~~~~~l~~~~~~~~-----~~----~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd 788 (963)
T 2x19_B 718 DDFAPMVPQLCEMLGRMYSTIP-----QA----SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPD 788 (963)
T ss_dssp STTGGGHHHHHHHHHHHHHHSC-----CH----HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHH
T ss_pred ccccccHHHHHHHHHHHHHcCC-----cc----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCch
Confidence 9999999999998877654311 11 133444555542 22222 244444443332 1 1224567
Q ss_pred HHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCC-hhhHHHHHhcC
Q 002400 837 EAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLP-PSTLASTWSSL 913 (927)
Q Consensus 837 e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l 913 (927)
-+...|..+..++...+..++.+ ...+..++..+...+.. ...++......++..+.+..+ .+.+++++...
T Consensus 789 ~~~~~f~ll~~~~~~~~~~~~~~-~~~~~~i~~~~~~~l~~----~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 861 (963)
T 2x19_B 789 IVDSFMQLLAQALKRKPDLFLCE-RLDVKAVFQCAVLALKF----PEAPTVKASCGFFTELLPRCGEVESVGKVVQED 861 (963)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCT-TSCHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhCcHHHcCC-cccHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 78889999999998877766642 22378888888888863 346677777777777776543 23345555443
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=2.6e-19 Score=201.10 Aligned_cols=398 Identities=14% Similarity=0.155 Sum_probs=281.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHH-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQA-NLKSVLLVQLQNETNKSIIKKICDAVSELAAS 134 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~-~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~ 134 (927)
++.|++.+. +.++.+|..|+..|++.+.... ...+..-.+. .+...|++.|.++.++.+|..++.+++.++..
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~-----~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEP-----NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSS-----SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC-----CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 456777764 6789999999999999886430 1122111222 56777888888765889999999999999874
Q ss_pred cCCC-C--CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCC-CCHHHHHHHHHHHH
Q 002400 135 VLPD-G--DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGS-NNFDLRIAALEATV 209 (927)
Q Consensus 135 ~~~~-~--~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~-~~~~vr~~a~~~l~ 209 (927)
.... . .....+|.++++++++++.+|+.++.+|+.++...++.-.... ..+++.+...+.+ ++..+|..|+.+++
T Consensus 96 ~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 96 NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 2110 0 1257999999999999999999999999999976543211111 3567888888885 68999999999999
Q ss_pred HHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHhhccCchh
Q 002400 210 NFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL-VDVVGSMLQVAEAEAVFP 288 (927)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~ll~~ll~~~~~~~~i~ 288 (927)
++. ..-........+...+|.+++. +.++++.+...++..+..++...+....... ..+++.++
T Consensus 176 ~l~-~~~~~~~~~~~~~~~l~~L~~~----l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~---------- 240 (450)
T 2jdq_A 176 NLC-RGKSPPPEFAKVSPCLNVLSWL----LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV---------- 240 (450)
T ss_dssp HHH-CCSSSCCCGGGTGGGHHHHHHH----TTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHH----------
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHHH----HccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHH----------
Confidence 999 5431111122334556655554 4567888899999999999876543332222 23455555
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRL 366 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~i 366 (927)
+++.+++|.+|..++.+|+.++.+.++.....+. .+++.+...+.++++.+|..|+++++.++....... .... ..+
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~~ 319 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANI 319 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTH
T ss_pred HHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCC
Confidence 5556788999999999999999887653332222 478899999999999999999999999987433333 2233 579
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh---
Q 002400 367 LPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ--- 442 (927)
Q Consensus 367 l~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~--- 442 (927)
+|.++..+.+ +++.||..|+++|.+++....++.....+ ..+++.|+.++++.++.++..++.+|+.++...+..
T Consensus 320 l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 398 (450)
T 2jdq_A 320 FPALISILQT-AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR 398 (450)
T ss_dssp HHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc
Confidence 9999999998 89999999999999999765433333222 257889999999999999999999999999765532
Q ss_pred ----hHHhHHHH-----HHHHHHHHhcccCcchhhHHHHHHHHHHHH
Q 002400 443 ----FQKYYDAV-----MPYLKAILVNANDKSNRMLRAKSMECISLV 480 (927)
Q Consensus 443 ----~~~~~~~i-----~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l 480 (927)
..+|...+ ++.|..+... ++..++..|+..+..+
T Consensus 399 ~~~~~~~~~~~l~~~g~~~~l~~l~~~----~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 399 NGTGINPYCALIEEAYGLDKIEFLQSH----ENQEIYQKAFDLIEHY 441 (450)
T ss_dssp SCSCCCHHHHHHHHHHCHHHHHHHHCH----HHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 12455444 4555544322 3445666555555443
No 25
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.85 E-value=5.8e-17 Score=199.69 Aligned_cols=700 Identities=10% Similarity=0.022 Sum_probs=416.6
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC---CCCCcc
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL---PDGDWP 142 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~---~~~~w~ 142 (927)
+++++.|+.|-..|++.- +. ++.|. .+++.|....+..+|..++.++....+..+ |.....
T Consensus 18 ~~d~~~r~~A~~~L~~~~-~~---p~~w~------------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 18 RSNSQNQAITHEWLTDAE-AS---PQAWQ------------FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp TSTTTC----CHHHHHTT-TS---THHHH------------HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred CCCHHHHHHHHHHHHHHH-cC---HHHHH------------HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 456778888888887643 32 23343 234455445588899999999988877543 222333
Q ss_pred chHHHHHHHhcC---CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCC------CHHHHHHHHHHHHHHHH
Q 002400 143 ELIPFIFQCLVT---FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSN------NFDLRIAALEATVNFIM 213 (927)
Q Consensus 143 ~ll~~l~~~l~s---~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~------~~~vr~~a~~~l~~l~~ 213 (927)
.+-..+++.+.+ ....+|.....++..++..... ..+.+++-+.+.++++ ++..+..++..|..+..
T Consensus 82 ~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 82 ELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 344455555432 3577888888999888876432 3455666666666543 45678888888887762
Q ss_pred hhC--CCchh----HHhHHhhHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHHHc--cCcHHHHHHHHHHHHHH
Q 002400 214 NCL--PSLGE----KERFLDLLPLMMRTLTEALNKGN--------ESSAQEALELLIELAA--TEPRFLRKQLVDVVGSM 277 (927)
Q Consensus 214 ~~~--~~~~~----~~~~~~~~p~ll~~l~~~l~~~~--------~~~~~~a~~~l~~l~~--~~~~~~~~~l~~ll~~l 277 (927)
+.+ ..... ...+...+|.+++.+.+++...+ +.....+++++..... .-|.. ....+++.+
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l 234 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVL 234 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHH
Confidence 111 11111 23445567777777776664321 1456667766665544 12221 334555555
Q ss_pred HHHhhccCchhhhh-----------CCcchhHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHHH-------hccCCCC--
Q 002400 278 LQVAEAEAVFPGFL-----------AAPEWQKHHAVLIALAQIAEGCSK-VMIKNLDQVVSMVL-------NSFQDPH-- 336 (927)
Q Consensus 278 l~~~~~~~~i~~~l-----------~~~~~~~r~aal~al~~i~~~~~~-~~~~~l~~l~~~l~-------~~l~d~~-- 336 (927)
+. +.. .++ .+++...|++|+.++..+...... ...+.+..+++.++ ..+.+.+
T Consensus 235 ~~-L~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~ 308 (971)
T 2x1g_F 235 LE-VVH-----KCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREND 308 (971)
T ss_dssp HH-HHH-----HHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCS
T ss_pred Hh-hhh-----hhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhccccc
Confidence 42 100 011 114578999999999999985331 11122333333322 2334444
Q ss_pred -HHHHHHHHHHHHHhHhhhchhHH----------HHhHhhHHHHHHHhccC----CCCchHHHHHHHHHHHhHhcC----
Q 002400 337 -PRVRWAAINAIGQLSTDLGPELQ----------TQFHHRLLPALVGAMDD----FQNPRVQAHAASAVLNFSENC---- 397 (927)
Q Consensus 337 -~~vr~~a~~~l~~~~~~~~~~~~----------~~~~~~il~~ll~~l~~----~~~~~v~~~a~~al~~l~~~~---- 397 (927)
..+.+..+..+..+++.....+. ..++..+++.++..... ..+..|...++..+..+++..
T Consensus 309 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~ 388 (971)
T 2x1g_F 309 NEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMS 388 (971)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 25666677777777754322221 24666788888876632 146789999999988887621
Q ss_pred ---C----CccccCchHHHHHHHHHHhcCCC---------------hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHH
Q 002400 398 ---T----PDILTPYLDGIVSKLLVLLQNGK---------------QMVQEGALTALASVADSSQGQFQKYYDAVMPYLK 455 (927)
Q Consensus 398 ---~----~~~~~~~l~~l~~~L~~~l~~~~---------------~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~ 455 (927)
. ...+.|++..+++.++..+..++ ...|..+..++..++...++. .++.+++.+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l~~~~~~l~ 465 (971)
T 2x1g_F 389 NDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY---ILEILAAMLD 465 (971)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHH
Confidence 1 12235677788888877764221 135566667777777666533 4445555555
Q ss_pred HHHhcc-cCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccc
Q 002400 456 AILVNA-NDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFI 534 (927)
Q Consensus 456 ~~l~~~-~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 534 (927)
+.+... .++.++.-|..++-+++.++..+.. ...++++.+++.+..+... +....++..++.++++++.-++.+.
T Consensus 466 ~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~-~~~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~- 541 (971)
T 2x1g_F 466 EAIADLQRHPTHWTKLEACIYSFQSVAEHFGG-EEKRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENP- 541 (971)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC----
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCH-
Confidence 554431 1124677888899999999877763 3356778888855444321 1123478888899999998887655
Q ss_pred cchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccH
Q 002400 535 PYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI 614 (927)
Q Consensus 535 ~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~ 614 (927)
.|++.+++.+++.+. +.+ +..|+.++..+++.++..+.||+
T Consensus 542 ~~l~~vl~~l~~~l~--~~v-------------------------------------~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 542 AYIPPAINLLVRGLN--SSM-------------------------------------SAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp -CHHHHHHHHHHHHH--SSC-------------------------------------HHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--hHH-------------------------------------HHHHHHHHHHHHHHHHHhccccH
Confidence 799999999998882 221 35788899999999999999999
Q ss_pred HHHHHHHhhhhccc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCC-hH---HHH
Q 002400 615 DQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEP-EI---DIC 689 (927)
Q Consensus 615 ~~~~~~l~~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~-d~---~v~ 689 (927)
+.++..+...+... .+...+..+..+++.++.... .....+++..++..++..+-+.+.... +. .-.
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--------~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 654 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--------PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRT 654 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--------TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 99999999888763 357889999999999876420 000012233333333333333332221 11 111
Q ss_pred HHHHHHHH-----------------------------------HhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHh
Q 002400 690 ASMLDALN-----------------------------------ESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDT 734 (927)
Q Consensus 690 ~~~l~~l~-----------------------------------~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ 734 (927)
...+..+. .++.....+..+...+..++++++..+|..+.||++.
T Consensus 655 ~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 734 (971)
T 2x1g_F 655 IFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD 734 (971)
T ss_dssp HHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH
T ss_pred HHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH
Confidence 11111111 1111122356788889999999999999999999999
Q ss_pred HHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCC------cHHHHHHHHHHHHHhhcCCC-CCCchhhhHHHHHHHHHHH
Q 002400 735 YLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSV------FKPLVGEALSRLDFVIRHPN-ALHSDNVMAYDNAVSALGK 807 (927)
Q Consensus 735 ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~------~~~~~~~il~~L~~~l~~~~-~~~~~~~~~~~na~~al~~ 807 (927)
+++.++..+..... ..+.+.++.++..-|.. +.+.+..+......++.... ....+...+++....-+++
T Consensus 735 ~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~ 811 (971)
T 2x1g_F 735 LCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQ 811 (971)
T ss_dssp HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHH
Confidence 99999988875322 23677788887765542 44455555555555555420 0012356788999999999
Q ss_pred HHhhcCCCC----C-HhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhcc
Q 002400 808 ICQFHRDSI----D-AAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERS 852 (927)
Q Consensus 808 l~~~~~~~~----~-~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~ 852 (927)
++.++|..+ . ++.+++..+..|.. .+....+.+++++..++...
T Consensus 812 ~l~~~p~~~~~s~~~l~~i~~~~~~~l~~-~~~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 812 IIKKIPQVLEDKTLAYDRLVFYAQRGMTL-PESGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp HHHSSGGGGGCTTSCHHHHHHHHHHHHTS-SCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhcC
Confidence 999998865 2 77888888888865 34445678888888887664
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.84 E-value=4e-15 Score=171.02 Aligned_cols=688 Identities=13% Similarity=0.084 Sum_probs=431.6
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 002400 56 ALNLSRMLSS-SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAAS 134 (927)
Q Consensus 56 ~~~L~~il~~-~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~ 134 (927)
+..+++++-+ +.+.+-|+.|+.-|--......-....|. +.--..|.+.+.++.++.+.-.+..+++.+...
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~-------~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK-------DHCIAKVASLTKVEKDQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH-------TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh-------CchHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Confidence 4556666654 77888899888766543322100122232 122345666677656889999998899888764
Q ss_pred cCCC--CCccc-hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH-----------HH----HHhHHHHHHHHHhhhCCC
Q 002400 135 VLPD--GDWPE-LIPFIFQCLVTFNDKIQESALLILSRMSQFVSE-----------VL----IAHGDTLHEVFSKFLGSN 196 (927)
Q Consensus 135 ~~~~--~~w~~-ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~-----------~l----~~~~~~l~~~l~~~l~~~ 196 (927)
.... ..|.+ =+|.+.+.+.++++..-.+++.++..+.+.+.. .+ ...+..++..+...+.+.
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDR 160 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhcc
Confidence 3110 01111 145677888888888889999999999887652 11 124677888888888887
Q ss_pred --CHHHHHHHHHHHHHHHHhhCCCchhHHhHH-hhHHHHHHHHHHHHhc---C----ChhHHHHHHHHHHHHHccCc-HH
Q 002400 197 --NFDLRIAALEATVNFIMNCLPSLGEKERFL-DLLPLMMRTLTEALNK---G----NESSAQEALELLIELAATEP-RF 265 (927)
Q Consensus 197 --~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~~~p~ll~~l~~~l~~---~----~~~~~~~a~~~l~~l~~~~~-~~ 265 (927)
+...|.+++..+..-+ .+-.-........ .-+..++.+..+.-.. + .++.+..+.-++..+.+... .-
T Consensus 161 ~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~ 239 (810)
T 3now_A 161 TISGAARDGVIELITRNV-HYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE 239 (810)
T ss_dssp TSCHHHHHHHHHHHHHHT-TCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH
T ss_pred ccChhhHHHHHHHHHHhC-CccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch
Confidence 7889999998888777 4332111111111 1122222222110000 0 12344444444444443321 11
Q ss_pred HHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhH--HHHHHHHHhccCCCCHHHHHHH
Q 002400 266 LRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL--DQVVSMVLNSFQDPHPRVRWAA 343 (927)
Q Consensus 266 ~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l--~~l~~~l~~~l~d~~~~vr~~a 343 (927)
-+......+. .|+...+...+...+--|.+++..+..+.++.-...+ ...++.++..+.++++.++..|
T Consensus 240 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A 310 (810)
T 3now_A 240 AKARFTDQID---------EYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVA 310 (810)
T ss_dssp HHHHHHHHHH---------HHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHH
T ss_pred hHHHHHHHHH---------HHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHH
Confidence 1222223332 2334455566667778889999999999888544433 2578888888999999999999
Q ss_pred HHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC--C--cccc-CchHHHHHHHHHHhc
Q 002400 344 INAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT--P--DILT-PYLDGIVSKLLVLLQ 418 (927)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~--~--~~~~-~~l~~l~~~L~~~l~ 418 (927)
+|+++..+.. +.........-+|.|...+.+ ++..+|..|..+|.++....+ . ..+. .-+..+++.+.++|.
T Consensus 311 ~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s-~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~ 387 (810)
T 3now_A 311 CECLIAASSK--KDKAKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI 387 (810)
T ss_dssp HHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcC-CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc
Confidence 9999998775 333233333345888898887 788999999999999875332 1 1121 125788999999998
Q ss_pred CC--ChhHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcc-------
Q 002400 419 NG--KQMVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKD------- 487 (927)
Q Consensus 419 ~~--~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~------- 487 (927)
++ +..+++.++++|+.++....... ... ..++|.|..++.. ++..+...+..+++.++....+.
T Consensus 388 ~~~~d~~v~~~AveaLayLS~~~~vk~-~lv~d~g~Ip~LV~LL~s----~d~~i~~~al~~L~NLt~~~d~q~~~~~l~ 462 (810)
T 3now_A 388 KPGKDKDIRRWAADGLAYLTLDAECKE-KLIEDKASIHALMDLARG----GNQSCLYGVVTTFVNLCNAYEKQEMLPEMI 462 (810)
T ss_dssp CSSCCSSHHHHHHHHHHHHTTSHHHHH-HHHHCHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHTTCSCCCCCCCSCG
T ss_pred CCCCCHHHHHHHHHHHHHHhCCcHHHH-HHHHccchHHHHHHHhCC----CChHHHHHHHHHHHHHcCCchhhhhhHHHH
Confidence 87 78899999999999975433221 122 3678888888864 34567777888888887632100
Q ss_pred --------------------hhhhhHH-----HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccch--hhh
Q 002400 488 --------------------KFRDDAK-----QVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYM--SVV 540 (927)
Q Consensus 488 --------------------~~~~~~~-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~i 540 (927)
....... ..++.++.+... .+..+++.+..++.+++.. .+....+ ...
T Consensus 463 ~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s---~s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~Ga 537 (810)
T 3now_A 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT---ESHNSQELIARVLNAVCGL--KELRGKVVQEGG 537 (810)
T ss_dssp GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC---CCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTH
T ss_pred HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCC
Confidence 0000011 245566665543 2345888888899999742 2222222 245
Q ss_pred HHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccc--ccc-cHHHH
Q 002400 541 MPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG--FFP-WIDQV 617 (927)
Q Consensus 541 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~--~~~-~~~~~ 617 (927)
+|.|+..+.... ...|..|+.+|..++...... |.. .....
T Consensus 538 ip~Lv~LL~s~~------------------------------------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~a 581 (810)
T 3now_A 538 VKALLRMALEGT------------------------------------EKGKRHATQALARIGITINPEVSFSGQRSLDV 581 (810)
T ss_dssp HHHHHHHHHSSC------------------------------------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHT
T ss_pred HHHHHHHHccCC------------------------------------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcH
Confidence 788888875321 123577888999888764332 211 23457
Q ss_pred HHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHHHHHHHHHccCChHHHHHHHHHHH
Q 002400 618 APTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTD-YIIPALVEALHKEPEIDICASMLDAL 696 (927)
Q Consensus 618 ~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~ll~~l~~e~d~~v~~~~l~~l 696 (927)
++.++.++....+...+..|+.+|..+... ..+....+.. ..+|.|...+..+
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~-------------~d~~~~~Ii~aG~l~~Lv~LL~s~------------- 635 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASM-------------NESVRQRIIKEQGVSKIEYYLMED------------- 635 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-------------CHHHHHHHHHTTHHHHHHHHHHSC-------------
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-------------CHHHHHHHHHcCCHHHHHHHHcCC-------------
Confidence 888888887533334456788888887532 1111222222 3566666666543
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHH
Q 002400 697 NESIQGKDKTAEERRIAICIFDDVMEHCREAALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVG 774 (927)
Q Consensus 697 ~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~ 774 (927)
+..+|..|+.+++.++..- +....+. ...++.|+..++.++..+|..|+|+|+.++...+......+.
T Consensus 636 ---------~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~ 705 (810)
T 3now_A 636 ---------HLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA 705 (810)
T ss_dssp ---------CTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred ---------CHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4678899999999988632 2323344 258899999999999999999999999999854444444443
Q ss_pred --HHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHhcCCCC--CcHHHHHHHHHHHHH
Q 002400 775 --EALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI---DAAQVVPAWLSCLPLK--GDLIEAKVVHAQLCS 847 (927)
Q Consensus 775 --~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~---~~~~~l~~~l~~Lp~~--~d~~e~~~~~~~l~~ 847 (927)
..++.|..++..+ +..++..|+.|++.+....++.. --...++.+++.|... .+.+....++++|-.
T Consensus 706 ~~g~I~~Lv~LL~s~------d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 706 IASWLDILHTLIANP------SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp STTHHHHHHHHHTCS------SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHCCC------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 5788888888765 35688999999999987433211 1123677777777543 355667778888887
Q ss_pred HHhc
Q 002400 848 MVER 851 (927)
Q Consensus 848 l~~~ 851 (927)
++..
T Consensus 780 ll~~ 783 (810)
T 3now_A 780 AERY 783 (810)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7754
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-19 Score=180.31 Aligned_cols=204 Identities=13% Similarity=0.273 Sum_probs=182.6
Q ss_pred hhhhhCCcchhHHHHHHHHHHH-HhhhchHHH--HhhHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhHhhhc-hhHHH-
Q 002400 287 FPGFLAAPEWQKHHAVLIALAQ-IAEGCSKVM--IKNLDQVVSMVLNSF-QDPHPRVRWAAINAIGQLSTDLG-PELQT- 360 (927)
Q Consensus 287 i~~~l~~~~~~~r~aal~al~~-i~~~~~~~~--~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~-~~~~~- 360 (927)
+.+.+++++|+.|.+|+.+|+. +++++++.. ...+..++..+.+.+ +|+|+.||..|+.+++.+++.++ +.+ .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f-~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF-SK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS-CH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc-cH
Confidence 4567789999999999999999 998877654 455678899999999 89999999999999999999998 888 5
Q ss_pred HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 361 QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 361 ~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
+|+..++|.++..+.| +.+.|+.++..++..+++.+++....+|++.+++.++..+++.++.+|+.++.+|+.++...+
T Consensus 100 ~y~~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999 889999999999999999987654435599999999999999999999999999999999988
Q ss_pred ---hhhHHhH-HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHH
Q 002400 441 ---GQFQKYY-DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 496 (927)
Q Consensus 441 ---~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 496 (927)
..|.+|+ +.++|.|.+.+.+ .+..+|..|++|++.++..+|.+.+.|+++.+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5688999 9999999999854 56789999999999999999987899987764
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.81 E-value=2.7e-18 Score=192.78 Aligned_cols=390 Identities=15% Similarity=0.113 Sum_probs=280.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh--hChh--------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccc
Q 002400 22 FETLISNLMSSSNEHRSHAEVLLSHLRQ--SHPD--------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSF 91 (927)
Q Consensus 22 l~~~L~~~~s~d~~~r~~Ae~~l~~~~~--~~p~--------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~ 91 (927)
+..+++.+.++|.++|..|-..|..+-. .+|. +.++.|++.+.++.++.+|..|+-.|.+.....+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~--- 98 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL--- 98 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH---
Confidence 5667778889999999999999987532 1231 36788888887665899999999999988764310
Q ss_pred cccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC---CccchHHHHHHHhcC-CChHHHHHHHHHH
Q 002400 92 IFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG---DWPELIPFIFQCLVT-FNDKIQESALLIL 167 (927)
Q Consensus 92 ~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~l~s-~~~~~r~~al~~l 167 (927)
... .-....+...|++.|.++ ++.+|..++.+++.++....... .-...++.++.++.+ .+..+|..++.+|
T Consensus 99 ~~~---~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 99 QTR---IVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp HHH---HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHH---HHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 000 001234556777777765 89999999999999987421000 013578999999985 7889999999999
Q ss_pred HHhhhhh-HHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHHHHHHHhcCC
Q 002400 168 SRMSQFV-SEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRTLTEALNKGN 244 (927)
Q Consensus 168 ~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~l~~~l~~~~ 244 (927)
+.++... +..-......+++.+.+.+.++++.++..|+.++..+. ... +.....+ ...+|.++ .++.+++
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~-~~~--~~~~~~~~~~~~i~~L~----~ll~~~~ 247 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS-DGP--NDKIQAVIDAGVCRRLV----ELLMHND 247 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT-SSS--HHHHHHHHHTTTHHHHH----HHTTCSC
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-CCC--cHHHHHHHHcCcHHHHH----HHHCCCc
Confidence 9999653 21111223567888888899889999999999999988 421 1111111 23445444 4455778
Q ss_pred hhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-
Q 002400 245 ESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD- 322 (927)
Q Consensus 245 ~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~- 322 (927)
++++..++..+..++...+......+. .+++.+. +++++++|.+|..|+.+|+.++.+..+.....+.
T Consensus 248 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~----------~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL----------HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH----------HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH----------HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 889999999999998765543332222 3555555 5666788999999999999999887765554442
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc-
Q 002400 323 QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD- 400 (927)
Q Consensus 323 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~- 400 (927)
.+++.++..+.++++.||..|+++++.++....++.... ....++|.|+..+.+ +++.++..++++|.+++...+..
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~ 396 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEA 396 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhh
Confidence 678888888989999999999999999987644332222 234699999999999 89999999999999998754321
Q ss_pred -----cccCchHHH-----HHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 401 -----ILTPYLDGI-----VSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 401 -----~~~~~l~~l-----~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
.+.+|...+ ++.+..++++++..+++.++.+|..+-
T Consensus 397 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 397 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 234666666 566777777777788888877776654
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.81 E-value=1.6e-17 Score=190.05 Aligned_cols=363 Identities=16% Similarity=0.157 Sum_probs=264.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASV 135 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~ 135 (927)
+..|+..+. +.++.+|..|+..|++.+...+ . ..+..-....+...|++.|.++.++.+|..++.+++.++...
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~--~---~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREH--R---PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSS--S---CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCC--C---ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 567777775 5679999999999999987531 0 011111223455667777776547899999999999998742
Q ss_pred CCC-CC--ccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 002400 136 LPD-GD--WPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA-HGDTLHEVFSKFLGSNNFDLRIAALEATVNF 211 (927)
Q Consensus 136 ~~~-~~--w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l 211 (927)
... .. ....++.|+.++.++++.+|+.|+.+|+.++...+..-.. ....+++.+...+.+++..++..|+.+|..+
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 110 11 2568999999999999999999999999999754321111 1135788888888888999999999999999
Q ss_pred HHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhh
Q 002400 212 IMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGF 290 (927)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~ 290 (927)
+ ..-............+|.++ .++.++++.+...++..+..++...+......+. .+++.++ ++
T Consensus 243 ~-~~~~~~~~~~~~~~~l~~L~----~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv----------~l 307 (530)
T 1wa5_B 243 C-RGKKPQPDWSVVSQALPTLA----KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV----------EL 307 (530)
T ss_dssp H-CCSSSCCCHHHHGGGHHHHH----HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH----------HG
T ss_pred h-CCCCCCCcHHHHHhHHHHHH----HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH----------HH
Confidence 9 54311111223344555544 4455778889999999999999766554443333 4556555 55
Q ss_pred hCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHH
Q 002400 291 LAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPA 369 (927)
Q Consensus 291 l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ 369 (927)
+.+++|.+|..|+.+|+.++.+.+......+. .+++.++..|.++++.+|..|+++|+.++.........-.-..++|.
T Consensus 308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~ 387 (530)
T 1wa5_B 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 66788999999999999999877654333332 57889999999999999999999999998743333322223578999
Q ss_pred HHHhccCCCCchHHHHHHHHHHHhHhcCCC--ccccCchH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 370 LVGAMDDFQNPRVQAHAASAVLNFSENCTP--DILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 370 ll~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~~~~~l~--~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
|+..+.+ +++.+|..|+++|.+++....+ +.. .++- .+++.|+.++.+.++.++..++.+|..+....+.
T Consensus 388 L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 388 LVKLLEV-AEYKTKKEACWAISNASSGGLQRPDII-RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHH-SCHHHHHHHHHHHHHHHHHTTTCTHHH-HHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CCHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999998 8899999999999999987543 222 2222 3788899999999999999999999999876654
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.81 E-value=9.9e-17 Score=184.73 Aligned_cols=296 Identities=15% Similarity=0.184 Sum_probs=204.1
Q ss_pred HhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh
Q 002400 112 LQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSK 191 (927)
Q Consensus 112 l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~ 191 (927)
|.+.....-+..+..++..+... ...+.+++.+++++++++...|+.++..+..+.+..++. ..-+++.+.+
T Consensus 22 L~~~~~~~k~~~~~kli~~~~~G----~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~l~~n~l~k 93 (591)
T 2vgl_B 22 LNNEKKEKRKEAVKKVIAAMTVG----KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM----AIMAVNSFVK 93 (591)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHTT----CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH----HHTTHHHHGG
T ss_pred HcCCCHHHHHHHHHHHHHHHHCC----CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH----HHHHHHHHHH
Confidence 34432333344455555544332 245678999999999999999999999999887765443 2234677888
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH
Q 002400 192 FLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV 271 (927)
Q Consensus 192 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 271 (927)
.++++++.+|..|+++++.+. . ..+.+.+++.+..++.+.++.++..|+.++..+....|..+.. .
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~-----~-------~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~ 159 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIR-----V-------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--Q 159 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCC-----S-------GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--H
T ss_pred HcCCCCHHHHHHHHHHHHcCC-----h-------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--c
Confidence 899999999999998887765 1 2245555666667777889999999999999998766665432 2
Q ss_pred HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHH-HHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 272 DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKV-MIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 272 ~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~-~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
.+++.+. ++++|+++.+|.+|+.+|+.++...++. .....+..++.+++.+.+.++..+...+.+++.+
T Consensus 160 ~~~~~l~----------~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 160 GFLDSLR----------DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp HHHHHHH----------HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred cHHHHHH----------HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 4455444 6777889999999999999998765421 1123345566666666778888888777777766
Q ss_pred HhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcC--CCccccCchHHHHHHHHHHhcCCChhHHHHH
Q 002400 351 STDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENC--TPDILTPYLDGIVSKLLVLLQNGKQMVQEGA 428 (927)
Q Consensus 351 ~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a 428 (927)
+.. + ......+++.+...+.+ .++.|+..|++++..+.... .++.+......+.+.|+.++ +.++.+|-.+
T Consensus 230 ~~~---~--~~~~~~~l~~l~~~l~~-~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~a 302 (591)
T 2vgl_B 230 NPK---D--DREAQSICERVTPRLSH-ANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVA 302 (591)
T ss_dssp CCC---S--HHHHHHHHHHHTTCSCS-STTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHH
T ss_pred CCC---C--hHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHH
Confidence 532 1 23456788899999998 89999999999999887654 22323223344555555444 3667788888
Q ss_pred HHHHHHHHHHhhhhhHHh
Q 002400 429 LTALASVADSSQGQFQKY 446 (927)
Q Consensus 429 ~~al~~l~~~~~~~~~~~ 446 (927)
+.+++.++...++.+.++
T Consensus 303 L~~l~~i~~~~p~~~~~~ 320 (591)
T 2vgl_B 303 LRNINLIVQKRPEILKQE 320 (591)
T ss_dssp HHHHHHHHHHCCSTTTTC
T ss_pred HHHHHHHHHhChHHHHHH
Confidence 888888776655444333
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.78 E-value=9.2e-17 Score=183.83 Aligned_cols=358 Identities=16% Similarity=0.191 Sum_probs=263.0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC----CccchHHHHHHHhcCCC-hHHHHHHHHHHHHhhhhhHHHHH
Q 002400 105 KSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG----DWPELIPFIFQCLVTFN-DKIQESALLILSRMSQFVSEVLI 179 (927)
Q Consensus 105 k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~----~w~~ll~~l~~~l~s~~-~~~r~~al~~l~~l~~~~~~~l~ 179 (927)
-..|++.|.++ ++.+|..++.++..++....... .-..++|.|++++.+++ +.+|..|+.+|..++...++...
T Consensus 76 l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 35677888775 88999999999999977543111 12368999999998876 89999999999999986444322
Q ss_pred HhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHH--hhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002400 180 AHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFL--DLLPLMMRTLTEALNKGNESSAQEALELLI 256 (927)
Q Consensus 180 ~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~ 256 (927)
... ...++.+...+.++++.+|..|+.+|+++. .. .+..+..+. ..+|.++..+. .+.+..+...++.++.
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~-~~--~~~~~~~i~~~g~l~~Ll~lL~---~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA-GD--SPKCRDLVLANGALLPLLAQLN---EHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH-HT--CHHHHHHHHHTTCHHHHHHTCC---TTCCHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh-CC--ChhhHHHHHHCCcHHHHHHHHh---cCCCHHHHHHHHHHHH
Confidence 222 257889999999999999999999999998 42 111122221 24555554442 3567888899999999
Q ss_pred HHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCC
Q 002400 257 ELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDP 335 (927)
Q Consensus 257 ~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~ 335 (927)
.++...+..-......++|.+. .++.++++.++..++.+|+.++.+..+.....+. .+++.++..|.++
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~----------~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALA----------RLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHH----------HHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHcCCCCCcHHHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence 9997643222233455666665 5556788999999999999999876654333332 4788899999999
Q ss_pred CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC-CchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHH
Q 002400 336 HPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ-NPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKL 413 (927)
Q Consensus 336 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L 413 (927)
++.||..|+++|+.++.........-.-..++|.|+..+.+ + ++.++..|+++|.+++.... +.....+ ..+++.|
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ-NLKKSIKKEACWTISNITAGNK-DQIQAVINAGIIGPL 376 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTCHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC-CCcHHHHHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHH
Confidence 99999999999999987543322222335689999999998 7 89999999999999987432 2221212 2567888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 414 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
+.++.+.+..++..++.+|+.++.........++ ..+++.|...+.. .+..++..++.+++.+.....
T Consensus 377 ~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 377 VNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----PDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999987555555555 4678888888765 345788889999999886553
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.78 E-value=8.2e-17 Score=184.12 Aligned_cols=356 Identities=12% Similarity=0.130 Sum_probs=258.7
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCc-----cchHHHHHHHhcCC-ChHHHHHHHHHHHHhhhhhHHHH
Q 002400 105 KSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDW-----PELIPFIFQCLVTF-NDKIQESALLILSRMSQFVSEVL 178 (927)
Q Consensus 105 k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~l 178 (927)
-..+++.|.++ ++.+|..++.++..++..... ..+ ..++|.|++++.++ ++.+|..++.+|..++...++..
T Consensus 89 i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSD-DMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 35577777776 788999999999988765321 111 36899999999987 89999999999999997544322
Q ss_pred HHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002400 179 IAHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRTLTEALNKGNESSAQEALELL 255 (927)
Q Consensus 179 ~~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l 255 (927)
.... ...++.+...+.++++.+|..|+.+|++++ ..- +..+..+ ...+|.++.. +.+.+..+...++.++
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~-~~~--~~~~~~~~~~~~l~~L~~l----l~~~~~~v~~~a~~~L 239 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA-GDS--TDYRDYVLQCNAMEPILGL----FNSNKPSLIRTATWTL 239 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH-TTC--HHHHHHHHHTTCHHHHHHG----GGSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh-CCC--ccchHHHHHcCcHHHHHHH----hccCCHHHHHHHHHHH
Confidence 1111 356788888888889999999999999998 321 1111111 2345555444 4457888899999999
Q ss_pred HHHHccC-cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccC
Q 002400 256 IELAATE-PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQ 333 (927)
Q Consensus 256 ~~l~~~~-~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~ 333 (927)
..++... +..-......++|.++ .++.++++.+|..++.+|+.++.+.++.....+. .+++.++..+.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~----------~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLA----------KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHH----------HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHH----------HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 9999654 3222223445666665 4556678999999999999999877654444333 57888999999
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHH
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSK 412 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~ 412 (927)
++++.||..|+++++.++.........-.-..++|.++..+.+ +++.+|..|+++|.+++.... +....++ ..+++.
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~ 387 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNT-EQIQAVIDANLIPP 387 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHH
Confidence 9999999999999999986543222122335799999999999 889999999999999987543 2222222 246778
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHhhh--hhHHhHH--HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 413 LLVLLQNGKQMVQEGALTALASVADSSQG--QFQKYYD--AVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 413 L~~~l~~~~~~v~~~a~~al~~l~~~~~~--~~~~~~~--~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
|+.++.+.+..+|..++++|+.++..... ....++- .++|.|...+.. .+..++..++.++..+.....
T Consensus 388 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 388 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI----ADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhhh
Confidence 88888888999999999999999987544 3333333 478888888754 356788889999998886543
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.77 E-value=6.4e-15 Score=174.71 Aligned_cols=553 Identities=13% Similarity=0.088 Sum_probs=336.4
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHH-HhHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLI-AHGDT 184 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~-~~~~~ 184 (927)
..+++.|.++ +..+|..++..+..+.+.... ...+|.|..++.+.++.+|+.|+.+|..++........ ...+.
T Consensus 118 ~~lv~~L~~~-~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 118 PTNVQRLAEP-SQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp --------CC-SCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 5677778775 778888888888766544333 45677777777888999999999999999876543211 12346
Q ss_pred HHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc
Q 002400 185 LHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEP 263 (927)
Q Consensus 185 l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (927)
+++.+.+.|.+. ++.+|..|+.+|..+. .. ......+.. ...++.+..++.++++.+...++..+..++...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls-~~---~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLS-HH---REGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TS---HHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CC---chhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 778888887654 8999999999999977 32 111112211 1345555666677888999999999999987644
Q ss_pred HHHHHHH-HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCCH-HHH
Q 002400 264 RFLRKQL-VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPHP-RVR 340 (927)
Q Consensus 264 ~~~~~~l-~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~-~vr 340 (927)
..-.... ...++.++ +++.+++++.+..++.+|..++.+..+...... ...++.++..+++.++ .++
T Consensus 267 ~~~~~v~~~g~v~~Lv----------~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMV----------ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp THHHHHHHTTHHHHHH----------HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHH
T ss_pred hhHHHHHHcCCHHHHH----------HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHH
Confidence 3332222 24566665 555567899999999999988865544221111 1345666667766554 556
Q ss_pred HHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC
Q 002400 341 WAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG 420 (927)
Q Consensus 341 ~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~ 420 (927)
+.++.++..++..- .....-.-..+++.|+..+.+ .++.++..++++|.+++...... .....+++.|+.++++.
T Consensus 337 ~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL~~-~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~ 411 (780)
T 2z6g_A 337 WTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSD 411 (780)
T ss_dssp HHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGTTC-SCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHHcC-CchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCC
Confidence 78888888887532 222112334688999999998 78899999999999999776432 23477899999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcch-hhh--hHHHH
Q 002400 421 KQMVQEGALTALASVADSSQGQFQKYY-DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDK-FRD--DAKQV 496 (927)
Q Consensus 421 ~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~-~~~--~~~~i 496 (927)
++.+|..++.+|+.++........... ...++.|...+....+ ...+|..|+.+++.++...+... ... .....
T Consensus 412 d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~ 489 (780)
T 2z6g_A 412 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489 (780)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCC--HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence 999999999999999764332221121 3467777777765322 22688888889888854222100 000 01123
Q ss_pred HHHHHHHhccCCCCCC-cchHHHHHHHHHHHHHhccccccch-hhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhh
Q 002400 497 MEVLMSLQGSQMEADD-PTTSYMLQAWARLCKCLGQEFIPYM-SVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQT 574 (927)
Q Consensus 497 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l-~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (927)
++.++.+... .+. .++..+..++++++..-.. ..... ..+++.|++.+... +.+
T Consensus 490 l~~L~~lL~~---~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~-------------------~~~- 545 (780)
T 2z6g_A 490 LPVVVKLLHP---PSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA-------------------HQD- 545 (780)
T ss_dssp HHHHHHTTST---TCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHH-------------------HHH-
T ss_pred HHHHHHHhcC---CChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhc-------------------chh-
Confidence 4555554432 223 5777788888888742111 11111 23455555555210 000
Q ss_pred hccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 002400 575 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEK 654 (927)
Q Consensus 575 ~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~ 654 (927)
.+..|+-.++. .+ +......++++..++.+|+.+....
T Consensus 546 ----------------~~~~aa~al~n---------q~-----------~~~~~~~~~v~~~a~~aL~~La~~~------ 583 (780)
T 2z6g_A 546 ----------------TQRRTSMGGTQ---------QQ-----------FVEGVRMEEIVEACTGALHILARDI------ 583 (780)
T ss_dssp ----------------HHHTTC---------------C-----------CSTTCCHHHHHHHHHHHHHHHTTSH------
T ss_pred ----------------HHHHHhhcccc---------ch-----------hhcccChHHHHHHHHHHHHHHhcCh------
Confidence 00000000000 00 1111124678888888888875321
Q ss_pred cCCCCCCHHHHHHH-HHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 002400 655 GQSQGRNESYVKQL-TDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD 733 (927)
Q Consensus 655 ~~~~~~~~~~~~~~-~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 733 (927)
.....+ -..+++.|++.+.+ .+..+|..|..+|+.++.. ......+.
T Consensus 584 --------~~~~~l~~~~~i~~Lv~lL~~----------------------~~~~v~~~a~~aL~~L~~~--~~~~~~i~ 631 (780)
T 2z6g_A 584 --------HNRIVIRGLNTIPLFVQLLYS----------------------PIENIQRVAAGVLCELAQD--KEAAEAIE 631 (780)
T ss_dssp --------HHHHHHHHTCCHHHHHHGGGC----------------------SCHHHHHHHHHHHHHHHTS--HHHHHHHH
T ss_pred --------hhHHHHHHCCcHHHHHHHHcC----------------------CCHHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence 001111 12345666666654 3467888888888887632 22222232
Q ss_pred --hHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcC
Q 002400 734 --TYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRH 786 (927)
Q Consensus 734 --~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~ 786 (927)
..++.|.+.+.++++.+|.+|+++|+.++...+..+...+ .++.+..++..
T Consensus 632 ~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l--~~~ll~~l~~~ 684 (780)
T 2z6g_A 632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL--SVELTSSLFRT 684 (780)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHH--HHHHHHHC---
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccc--cHHHHHHHHhC
Confidence 3678888889999999999999999999988775554432 33444444443
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.76 E-value=2e-16 Score=181.12 Aligned_cols=362 Identities=14% Similarity=0.117 Sum_probs=262.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASV 135 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~ 135 (927)
++.|+..+. +.++.+|..|+..|++.+...+ -.....-....+-..|++.|.++.++.+|..++.+++.|+...
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIER-----SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSS-----SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCC-----CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 566777775 5689999999999999987641 0111111233456778888887644899999999999998742
Q ss_pred CCCC---CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhh-CCCCHHHHHHHHHHHHH
Q 002400 136 LPDG---DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFL-GSNNFDLRIAALEATVN 210 (927)
Q Consensus 136 ~~~~---~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l-~~~~~~vr~~a~~~l~~ 210 (927)
.... .-...+|.|+.++.++++.+|+.++.+|+.++...+..-.... ...++.+...+ .+++..++..|+.++..
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1100 0125899999999999999999999999999865443111111 24677788888 56689999999999999
Q ss_pred HHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhh
Q 002400 211 FIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPG 289 (927)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~ 289 (927)
+. ...+.. ........ ++.+..++.++++++...++..+..++...+......+. .+++.++ .
T Consensus 230 L~-~~~~~~-~~~~~~~~----l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv----------~ 293 (528)
T 4b8j_A 230 FC-RGKPQP-SFEQTRPA----LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV----------E 293 (528)
T ss_dssp HH-CSSSCC-CHHHHTTH----HHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHH----------H
T ss_pred HH-cCCCCC-cHHHHHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHH----------H
Confidence 99 543221 12223344 444555556788999999999999998765443333222 3555555 5
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhHHHHhHhhHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPELQTQFHHRLL 367 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il 367 (927)
++.++++.+|..|+.+|+.++.+........+ ..+++.+...|.++ ++.+|..|+|+|+.++.........-.-..++
T Consensus 294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 56677899999999999999987765443333 24678888888888 99999999999999987433333223345789
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l--~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
|.|+..+.+ .++.++..|+++|.+++....++.. .++ ..+++.|+.++.+.++.++..++.+|+.+....+.
T Consensus 374 ~~L~~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 374 GPLVNLLQT-AEFDIKKEAAWAISNATSGGSHDQI-KYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHH-HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 7899999999999999987543322 333 25788899999999999999999999999876654
No 35
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.75 E-value=1.7e-13 Score=169.21 Aligned_cols=389 Identities=12% Similarity=0.132 Sum_probs=250.8
Q ss_pred HHHHHHhccC--CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc-----CCCCchHHHHHHHHHHHhHhc
Q 002400 324 VVSMVLNSFQ--DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD-----DFQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 324 l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~-----~~~~~~v~~~a~~al~~l~~~ 396 (927)
+++.+...+. ..+|+.|+++++++|.+++.+.......++..+++.+..... + +.+.++..++++++.+++.
T Consensus 452 v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~-~~~~v~~~~~~~lgry~~~ 530 (1049)
T 3m1i_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD-NKAVVASDIMYVVGQYPRF 530 (1049)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH-HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc-chHHHHHHHHHHHHHHHHH
Confidence 3344444443 468999999999999999877655434567888888877432 2 4566777899999999876
Q ss_pred CCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhH--------HhHHHHHHHHHHHHhcccCcchhh
Q 002400 397 CTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQ--------KYYDAVMPYLKAILVNANDKSNRM 468 (927)
Q Consensus 397 ~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~--------~~~~~i~~~L~~~l~~~~~~~~~~ 468 (927)
.... ..|++.+++.++..+.+.++.|+..|+.++..++..++..+. ||++.++..+...+..... .
T Consensus 531 ~~~~--~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~----~ 604 (1049)
T 3m1i_C 531 LKAH--WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP----Q 604 (1049)
T ss_dssp HHHC--HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH----H
T ss_pred HHhH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH----H
Confidence 5432 368999999999999998999999999999999999888876 9999999999988765322 1
Q ss_pred HHHHHHHHHHHHHHhhC-cchhhhhHHHHHHHHHHHhcc-------CCC-CCCc--ch--HHHHHHHHHHHHHhcccccc
Q 002400 469 LRAKSMECISLVGMAVG-KDKFRDDAKQVMEVLMSLQGS-------QME-ADDP--TT--SYMLQAWARLCKCLGQEFIP 535 (927)
Q Consensus 469 lr~~a~~~l~~l~~~~~-~~~~~~~~~~i~~~l~~~~~~-------~~~-~~~~--~~--~~~~~~~~~l~~~~~~~~~~ 535 (927)
-....+++++.++.+.| ++...+++..+++.+...+.. ..+ ..++ .+ ..++.++..++..+|..|.|
T Consensus 605 ~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p 684 (1049)
T 3m1i_C 605 QVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYP 684 (1049)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 23467999999999888 356788888877765432211 000 0011 12 35577889999999999999
Q ss_pred chhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHH
Q 002400 536 YMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID 615 (927)
Q Consensus 536 ~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~ 615 (927)
+++.+++.++.....- ...++. +...-+.. ..+..+..++.
T Consensus 685 ~~~~i~~~~l~~~~~~----------------------------------~~~~~~---~~~~~g~~--~~~~p~~~~~~ 725 (1049)
T 3m1i_C 685 QLGHIYYNMLQLYRAV----------------------------------SSMISA---QVAAEGLI--ATKTPKVRGLR 725 (1049)
T ss_dssp HHHHHHHHHHHHHHHH----------------------------------HHHHHH---HHHHHCGG--GGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------------------------------HHHHHH---HHHccCch--hhhhHHHHHHH
Confidence 9998887766443210 000000 00000000 01222334445
Q ss_pred HHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 002400 616 QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDA 695 (927)
Q Consensus 616 ~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~ 695 (927)
.+.+.+.+++....+ .. ..+. .....+...++..++..+....
T Consensus 726 ~~~~~l~~ll~~~~~-~~-----~~l~--------------------~~~~~~~~~~l~~ll~~~~~~~----------- 768 (1049)
T 3m1i_C 726 TIKKEILKLVETYIS-KA-----RNLD--------------------DVVKVLVEPLLNAVLEDYMNNV----------- 768 (1049)
T ss_dssp HHHHHHHHHHHHHHH-HC-----SCHH--------------------HHHHHTHHHHHHHHHHHHHHSC-----------
T ss_pred HHHHHHHHHHHHHHH-hC-----CCHH--------------------HHHHHHHHHHHHHHHHHHHhCC-----------
Confidence 555544443332100 00 0000 1112223333333333332110
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHc-----c--CCChhHHhhHhHHHHHHHhhcCCC
Q 002400 696 LNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEAC-----N--DKHPDVRQAAVYGIGVCAEFGGSV 768 (927)
Q Consensus 696 l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l-----~--d~~~~vr~~a~~~lg~l~~~~~~~ 768 (927)
..... ..++.+++.++...|+.+.+|++.+++.+..+. . +++|++|+.....++.+..+.+..
T Consensus 769 ---------~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~ 838 (1049)
T 3m1i_C 769 ---------PDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAA 838 (1049)
T ss_dssp ---------GGGCC-THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHH
T ss_pred ---------ccccc-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHH
Confidence 00111 457889999999999888899999988888774 2 468999999999999999988765
Q ss_pred cHH----HHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhh
Q 002400 769 FKP----LVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQF 811 (927)
Q Consensus 769 ~~~----~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~ 811 (927)
+.+ .+..+++.....+..+ +..+.+.++..+-.++..
T Consensus 839 l~~~~~~~~~~v~~~~~~al~~~------~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 839 FLELPPAAFKLFVDAICWAFKHN------NRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCC------SHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHHHHH
Confidence 543 2556666666666544 355667788888877765
No 36
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.75 E-value=1.2e-15 Score=175.82 Aligned_cols=406 Identities=12% Similarity=0.106 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQS--HPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~--~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
..++.++-+.+.++|...|+.+-..+-.+... +...+...++..+ ++.+..+|+++...+.+.....
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~---------- 80 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKSQ---------- 80 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHS----------
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccC----------
Confidence 45677777888899988888887776543322 2222334455533 4788999999999998776432
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400 97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE 176 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 176 (927)
++....+.+.+.+-|.+ +++.+|..+..+++.+. .+ .-++.+++.+..++.++++.+|..|+.++..++...++
T Consensus 81 -~e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~ 154 (591)
T 2vgl_B 81 -PDMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ 154 (591)
T ss_dssp -HHHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC
T ss_pred -chHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh
Confidence 23323334455555555 48999988777776553 23 56788889999999999999999999999999986554
Q ss_pred HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002400 177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLI 256 (927)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~ 256 (927)
.+.. ..+++.+...+.|+++.|+..|+.+++.+. ..-++. .+..+.+..+..+...+.+.++-.....++.+.
T Consensus 155 ~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~-~~~~~~----~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 155 MVED--QGFLDSLRDLIADSNPMVVANAVAALSEIS-ESHPNS----NLLDLNPQNINKLLTALNECTEWGQIFILDCLS 227 (591)
T ss_dssp CHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHT-TSCCSC----CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHH-hhCCCc----cchhccHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 3221 468899999999999999999999999988 432110 012233333333333344455555555666554
Q ss_pred HHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc---hHHHHhhHHHHHHHHHhccC
Q 002400 257 ELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC---SKVMIKNLDQVVSMVLNSFQ 333 (927)
Q Consensus 257 ~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~---~~~~~~~l~~l~~~l~~~l~ 333 (927)
.+...++.. ...+++.+. ..+++.++.++..|+.++..+.... ++.+......+.+.++..+
T Consensus 228 ~l~~~~~~~----~~~~l~~l~----------~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~- 292 (591)
T 2vgl_B 228 NYNPKDDRE----AQSICERVT----------PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL- 292 (591)
T ss_dssp TSCCCSHHH----HHHHHHHHT----------TCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-
T ss_pred HhCCCChHH----HHHHHHHHH----------HHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-
Confidence 444332222 334454443 5667889999999999999987543 2233334455666666444
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHH
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKL 413 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L 413 (927)
++++.+|..|+.+++.+....+..+ ..+... ++...+| +..||..++..+..++... -.+.+++.|
T Consensus 293 ~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~~----~~~~~~d--~~~Ir~~al~~L~~l~~~~-------nv~~iv~~L 358 (591)
T 2vgl_B 293 SGEPEVQYVALRNINLIVQKRPEIL-KQEIKV----FFVKYND--PIYVKLEKLDIMIRLASQA-------NIAQVLAEL 358 (591)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTTT----TSCCTTS--CHHHHHHHHHHHHHTCCSS-------THHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHhChHHH-HHHHHh----heeccCC--hHHHHHHHHHHHHHHCChh-------hHHHHHHHH
Confidence 5789999999999999987543222 222222 2222244 4899999999988876332 256788888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 414 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
...+.+.+..+|..++.+|+.++...+ +..+.+++.|.+.+... ...++..++.++..+....+
T Consensus 359 ~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~----~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 359 KEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTK----VNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHccc----chHHHHHHHHHHHHHHHHCc
Confidence 899999999999999999999986654 44566677777777652 33466677778888776654
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.74 E-value=1.6e-15 Score=179.80 Aligned_cols=541 Identities=11% Similarity=0.056 Sum_probs=314.1
Q ss_pred CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 140 DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 140 ~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
.+..-++.+++.+.+++..+|..++..+...-. ..+ ....++.+...+.++++.||..|+.++..+. ...
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i---~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~-~~~--- 181 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDD---AEL---ATRAIPELTKLLNDEDQVVVNKAAVMVHQLS-KKE--- 181 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-TSH---
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhH---HHH---HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHh-CCC---
Confidence 344457888888888888888888888775421 111 2567788888888889999999999999998 421
Q ss_pred hhHHhHHhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHccCcHHHHHHH--HHHHHHHHHHhhccCchhhhhCCcch
Q 002400 220 GEKERFLDLLPLMMRTLTEALNK-GNESSAQEALELLIELAATEPRFLRKQL--VDVVGSMLQVAEAEAVFPGFLAAPEW 296 (927)
Q Consensus 220 ~~~~~~~~~~p~ll~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~l--~~ll~~ll~~~~~~~~i~~~l~~~~~ 296 (927)
.....+. -.+.++..+...+.+ .+.+++..++..+..++..... +..+ ...++.++ +++++++.
T Consensus 182 ~~~~~i~-~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv----------~lL~~~~~ 248 (780)
T 2z6g_A 182 ASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALV----------NMLGSPVD 248 (780)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHH----------HHTTCSCH
T ss_pred hhHHHHH-hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHH----------HHHcCCCH
Confidence 1111111 012344444444443 4788888999999888765321 1111 13555555 55667789
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhc
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAM 374 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l 374 (927)
..|..|+.+|+.++....+...... ...++.++..+.++++.++..++.++..++... ++.... .-...++.|+..+
T Consensus 249 ~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~e~~~~i~~~~~i~~Lv~lL 327 (780)
T 2z6g_A 249 SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QESKLIILASGGPQALVNIM 327 (780)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999976543222222 357888999999999999999999999887532 122112 2336788899988
Q ss_pred cCCCCchHHHHHHHHHHHhHhcCCCccccCch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHH
Q 002400 375 DDFQNPRVQAHAASAVLNFSENCTPDILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMP 452 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l--~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~ 452 (927)
.+.....++..++.+|.+++.. . + ..+.+ ...++.|+.++.+.+..++..++.++..++...... .....++|
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~~-~-~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~ 402 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSVC-S-S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLG 402 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTS-T-T-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcC-h-H-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHH
Confidence 8833345566788888888853 2 1 11111 245788888888888899999999999998655431 12356788
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhh-HHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcc
Q 002400 453 YLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDD-AKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQ 531 (927)
Q Consensus 453 ~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (927)
.|...+.. .+..+|..|..+++.++..-. +..... -...++.++.+.... +..+.++..++.++++|+...++
T Consensus 403 ~Lv~lL~~----~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 403 TLVQLLGS----DDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp HHHHHTTC----SCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHcC----CCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCch
Confidence 88887754 456788888888888864311 100000 012333333322210 11125777888888887642221
Q ss_pred c--c--ccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhc
Q 002400 532 E--F--IPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELK 607 (927)
Q Consensus 532 ~--~--~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~ 607 (927)
. . .-.-...+|.|++.+.... + + .-+..|+.+|+.++..-.
T Consensus 477 ~~~~~~~v~~~~~l~~L~~lL~~~~----------------~--~-----------------~v~~~A~~aL~nLa~~~~ 521 (780)
T 2z6g_A 477 AEMAQNAVRLHYGLPVVVKLLHPPS----------------H--W-----------------PLIKATVGLIRNLALCPA 521 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTSTTC----------------C--H-----------------HHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhcCCC----------------h--H-----------------HHHHHHHHHHHHHhcCHH
Confidence 1 0 0011345777777774321 0 0 124567777877763211
Q ss_pred ccccccH-HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChH
Q 002400 608 EGFFPWI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEI 686 (927)
Q Consensus 608 ~~~~~~~-~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~ 686 (927)
.. .... ..+++.++.++.+. +..+|+.++-+++. +.+...
T Consensus 522 ~~-~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~al~n----------------------------------q~~~~~--- 562 (780)
T 2z6g_A 522 NH-APLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQ----------------------------------QQFVEG--- 562 (780)
T ss_dssp HH-HHHHHTTHHHHHHHHHHHH-HHHHHHTTC----------------------------------------CCSTT---
T ss_pred HH-HHHHHCCCHHHHHHHHHhc-chhHHHHHhhcccc----------------------------------chhhcc---
Confidence 10 0000 12333333333321 22333322211111 000000
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhh-HHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhc
Q 002400 687 DICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKY-YDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFG 765 (927)
Q Consensus 687 ~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~ 765 (927)
....+++..++++|+.++.. ....... -...+|.|+..+.++++.++.+|+.+|+.++..
T Consensus 563 -----------------~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~- 623 (780)
T 2z6g_A 563 -----------------VRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 623 (780)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-
T ss_pred -----------------cChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 11234566677777776532 1111111 135788999999999999999999999998743
Q ss_pred CCCcHHHHHH--HHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCC
Q 002400 766 GSVFKPLVGE--ALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDS 815 (927)
Q Consensus 766 ~~~~~~~~~~--il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~ 815 (927)
......+.+ .++.|..++.++ +..++.+|+.|++++....+..
T Consensus 624 -~~~~~~i~~~g~i~~L~~Ll~~~------~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 624 -KEAAEAIEAEGATAPLTELLHSR------NEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp -HHHHHHHHHTTCHHHHHHGGGCS------CHHHHHHHHHHHHHHHTTSCTT
T ss_pred -HHHHHHHHHCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHh
Confidence 223333333 567777777665 4669999999999999877643
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=4.1e-17 Score=165.14 Aligned_cols=196 Identities=15% Similarity=0.193 Sum_probs=171.7
Q ss_pred hhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 287 FPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 287 i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
+.+.+++.+|+.|.+|+.+|+.+++++++.....+.++++.+...+. |+++.||.+|+.+++.++..+++.+ ..|...
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASA 98 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHH
Confidence 44667789999999999999999998665444556789999999995 9999999999999999999998888 789999
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh--hh
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG--QF 443 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~--~~ 443 (927)
++|.++..+.| +++.||.+++.++..+++..+ ++.+++.+...+++.++.+|..++..|+.++...++ .+
T Consensus 99 ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 99 CVPSLLEKFKE-KKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999 999999999999999987643 577889999999999999999999999998877653 36
Q ss_pred HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHH
Q 002400 444 QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 495 (927)
Q Consensus 444 ~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~ 495 (927)
.+|++.++|.|...+.+ ....+|..|++|++.++..+|.+.+.++++.
T Consensus 171 ~~~l~~l~p~l~~~l~D----~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNE----PDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 78999999999999854 5678999999999999999997667777554
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.73 E-value=2.6e-14 Score=167.09 Aligned_cols=523 Identities=13% Similarity=0.091 Sum_probs=324.2
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHHhhCCCc
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA-HGDTLHEVFSKFLGSN-NFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
...++.|..+++++++.+|..|+.+|..++......... .....++.+.+.+.+. ++++|..|+.+|..+. .. .
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~---~ 88 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HH---R 88 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TS---H
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cC---h
Confidence 346888888999999999999999999999765432111 1245677777777765 8999999999999877 32 1
Q ss_pred hhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHhhccCchhhhhCCcchhH
Q 002400 220 GEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL-VDVVGSMLQVAEAEAVFPGFLAAPEWQK 298 (927)
Q Consensus 220 ~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~ll~~ll~~~~~~~~i~~~l~~~~~~~ 298 (927)
..+..+.. ...++.+..++.++++.+...++..+..++........... ...+|.++ +++++++++.
T Consensus 89 ~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv----------~lL~~~~~~~ 156 (644)
T 2z6h_A 89 EGLLAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV----------ALLNKTNVKF 156 (644)
T ss_dssp HHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH----------HGGGCCCHHH
T ss_pred hhHHHHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHH----------HHHCcCCHHH
Confidence 11222222 12444555566678889999999999999876433322222 35566666 5555678899
Q ss_pred HHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhcc
Q 002400 299 HHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMD 375 (927)
Q Consensus 299 r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~ 375 (927)
+.+++.+|..++.+.++.-.... ...++.++..+.+. ...+++.++.++..++.. +..... .-..+++.++..+.
T Consensus 157 ~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~~~~~l~~~g~l~~L~~ll~ 234 (644)
T 2z6h_A 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLT 234 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC--TTHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHh
Confidence 99999999999875544211111 13466666666655 467889999999988853 222122 23468999999999
Q ss_pred CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHH
Q 002400 376 DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY-DAVMPYL 454 (927)
Q Consensus 376 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~L 454 (927)
+ ++..++..++++|.+++...... .....+++.|+.++.+.+..+++.++.+++.++........... ...++.|
T Consensus 235 ~-~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 235 D-PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp C-SCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 8 88999999999999999775432 34568899999999999999999999999999864332211111 2467888
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchh-hh--hHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhcc
Q 002400 455 KAILVNANDKSNRMLRAKSMECISLVGMAVGKDKF-RD--DAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQ 531 (927)
Q Consensus 455 ~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~-~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (927)
...+....+ ...++..|+.+++.++..-+.... .. .....++.+..+.... .+..++..+..++++++..-..
T Consensus 311 v~lL~~~~~--~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 311 VRTVLRAGD--REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT--CCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHccCC--cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc--CchHHHHHHHHHHHHHccCHHH
Confidence 888765321 246888889999888643221111 11 0112455555544321 1225777777777777642111
Q ss_pred ccccc-hhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccc
Q 002400 532 EFIPY-MSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF 610 (927)
Q Consensus 532 ~~~~~-l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~ 610 (927)
. ... -..++|.+++.+... +.+. |..|+-+++. .
T Consensus 387 ~-~~i~~~~~i~~Lv~lL~~~-------------------~~~v-----------------r~~a~~al~n------~-- 421 (644)
T 2z6h_A 387 H-APLREQGAIPRLVQLLVRA-------------------HQDT-----------------QRRTSMGGTQ------Q-- 421 (644)
T ss_dssp H-HHHHHTTHHHHHHHHHHHH-------------------HHHH-----------------TTC----------------
T ss_pred H-HHHHHcCCHHHHHHHHhcc-------------------chhh-----------------hhHhhhcccc------c--
Confidence 1 111 123455555555220 0000 0001000100 0
Q ss_pred cccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHHHHHHccCChHHHH
Q 002400 611 FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQL-TDYIIPALVEALHKEPEIDIC 689 (927)
Q Consensus 611 ~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~e~d~~v~ 689 (927)
+......+++++..+..+|..+..... ....+ -..+++.+++.+.+
T Consensus 422 ------------~~~~~~~~~~v~~~a~~aL~~La~~~~--------------~~~~l~~~~~i~~Lv~lL~~------- 468 (644)
T 2z6h_A 422 ------------QFVEGVRMEEIVEGCTGALHILARDVH--------------NRIVIRGLNTIPLFVQLLYS------- 468 (644)
T ss_dssp --------------CCSSCHHHHHHHHHHHHHHHTTSHH--------------HHHHHHHTTCHHHHHHHTTC-------
T ss_pred ------------hhcccccHHHHHHHHHHHHHHHhcCHH--------------HHHHHHhCCcHHHHHHHHcC-------
Confidence 001111256788888888887754321 01111 12356666666644
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCC
Q 002400 690 ASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGS 767 (927)
Q Consensus 690 ~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~ 767 (927)
.+..++..|..+|+.++.. . .....+ ...++.+.+.+.++++.+|.+|+++|+.++...+.
T Consensus 469 ---------------~~~~v~~~a~~aL~~l~~~-~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 469 ---------------PIENIQRVAAGVLCELAQD-K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531 (644)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHTS-H-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCH
T ss_pred ---------------CCHHHHHHHHHHHHHHHcC-H-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcH
Confidence 3466788888888877653 1 112222 24567888889999999999999999999988764
Q ss_pred CcHHHHHHHHHHHHHhhcCC
Q 002400 768 VFKPLVGEALSRLDFVIRHP 787 (927)
Q Consensus 768 ~~~~~~~~il~~L~~~l~~~ 787 (927)
.+...+ .++.+...+...
T Consensus 532 ~~~~~~--~~~il~~~~~~~ 549 (644)
T 2z6h_A 532 DYKKRL--SVELTSSLFRTE 549 (644)
T ss_dssp HHHHHH--HHHHHHHHSCCS
T ss_pred hhhccc--chHHHHHHHhCC
Confidence 444332 355555666543
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.73 E-value=4.6e-14 Score=162.90 Aligned_cols=448 Identities=11% Similarity=0.109 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh-Ch-hHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQS-HP-DAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL 96 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~-~p-~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l 96 (927)
.+++.++-+.+.++|...|+.+-..+-.+... ++ .......+..+. +.+...|+++.+.+.+.....
T Consensus 33 ~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~---------- 101 (618)
T 1w63_A 33 QKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDER---------- 101 (618)
T ss_dssp HHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCC----------
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCC----------
Confidence 45555666666677766777665554443221 11 111223334443 788899999999888776543
Q ss_pred CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400 97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE 176 (927)
Q Consensus 97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 176 (927)
++..-.+-+.+.+-|.+. ++.+|..+..+++.|...+ -.+.+++.+..++.+.++.+|..|+.++..+....++
T Consensus 102 -~e~~~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 102 -QDVHLLMTNCIKNDLNHS-TQFVQGLALCTLGCMGSSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp -HHHHHHHHHHHHHHHSCS-SSHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred -cHHHHHHHHHHHHhcCCC-CHhHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 344445666777777764 9999999999999986422 2356789999999999999999999999999987765
Q ss_pred HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhc-----------CCh
Q 002400 177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNK-----------GNE 245 (927)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~-----------~~~ 245 (927)
.. +.+++.+...+.|+++.|+..|+.++..+. .. +++....+..++|.+++.+.+++.+ .++
T Consensus 176 ~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~-~~--~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 176 LM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMC-ER--SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp GG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHC-CS--HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred HH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHH-Hh--ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 43 357777888899999999999999999987 32 1111346778899999888876642 245
Q ss_pred hHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 002400 246 SSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVV 325 (927)
Q Consensus 246 ~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~ 325 (927)
-.....++++..++..+|..-. .+..+++.++ ... ...++.+..+...++.++..+... +. .....+
T Consensus 249 ~~q~~il~~L~~l~~~~~~~~~-~~~~~L~~l~---~~~----~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~~a~ 315 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDDSSE-AMNDILAQVA---TNT----ETSKNVGNAILYETVLTIMDIKSE-SG----LRVLAI 315 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHH-TTHHHHHHHH---HTS----CCSSTHHHHHHHHHHHHHHHSCCC-HH----HHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHH---hcc----ccccchHHHHHHHHHHHHHhcCCC-HH----HHHHHH
Confidence 5566677888777766554322 1222232222 100 112234566777777777765331 11 123456
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCc
Q 002400 326 SMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPY 405 (927)
Q Consensus 326 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 405 (927)
+.+...+.++++.+|..|+.+++.++...+ ..+....+.++.++.| ++..||..|..++..++....
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-----~~~~~~~~~i~~~l~d-~d~~Ir~~alelL~~l~~~~n------- 382 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDH-----NAVQRHRSTIVDCLKD-LDVSIKRRAMELSFALVNGNN------- 382 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-----HHHGGGHHHHHHGGGS-SCHHHHHHHHHHHHHHCCSSS-------
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCH-----HHHHHHHHHHHHHccC-CChhHHHHHHHHHHHHccccc-------
Confidence 667777888999999999999999987532 3455667788899999 899999999999998875432
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 406 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 406 l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
+..++..+...+.+.+..+|..++.+|+.++....+.+..|++.++.. +.... ..++..++.++..+....+
T Consensus 383 v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~l----L~~~~----~~v~~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 383 IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV----LTTAG----SYVRDDAVPNLIQLITNSV 454 (618)
T ss_dssp THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH----HHHTG----GGSCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH----HHhcc----chhHHHHHHHHHHHHhcCh
Confidence 456677788888888899999999999999987766666666555544 43321 1233334556666655433
Q ss_pred cchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhc
Q 002400 486 KDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLG 530 (927)
Q Consensus 486 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (927)
+.....+..+++.+.. .. ..++....++-++|..+..+.
T Consensus 455 -~l~~~~v~~L~~~l~~----~~-~~~~~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 455 -EMHAYTVQRLYKAILG----DY-SQQPLVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp -STHHHHHHHHHHHHHH----CC-SCSHHHHHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHHhc----cc-ccHHHHHHHHHHHhhhHHHhc
Confidence 3222233344444332 11 123444556777888876653
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.71 E-value=4.5e-13 Score=154.61 Aligned_cols=494 Identities=11% Similarity=0.095 Sum_probs=308.3
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+++++++...|+.+..++..+++..++ ..--+++.+.+.++|+++.+|..|+++++.+.. + ...+.+++
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~~~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~----~~~~~l~~ 145 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDERQD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---S----EMCRDLAG 145 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---H----HHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---H----HHHHHHHH
Confidence 344578899999999999988876554 233467788889999999999999999999874 2 45678899
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYD 448 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 448 (927)
.+.+++.+ +++.||.+|+.++..+....+ +.+ +.+++.+..++.+.++.|+..|+.+++.++...++ ...++.
T Consensus 146 ~l~~~L~~-~~~~VRk~A~~al~~l~~~~p-~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~-~~~~~~ 218 (618)
T 1w63_A 146 EVEKLLKT-SNSYLRKKAALCAVHVIRKVP-ELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD-MLAHFR 218 (618)
T ss_dssp HHHHHHHS-CCHHHHHHHHHHHHHHHHHCG-GGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH-HHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHHCh-HHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH-HHHHHH
Confidence 99999999 999999999999999998764 333 34556677788899999999999999998754432 233444
Q ss_pred HHHHHHHHHHhcc----c-------CcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHH
Q 002400 449 AVMPYLKAILVNA----N-------DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSY 517 (927)
Q Consensus 449 ~i~~~L~~~l~~~----~-------~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 517 (927)
.++|.+...+... . +..+.-++..++++++.++..-. ...+.+++.+.++..........-...
T Consensus 219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-----~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 219 KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-----DSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-----HHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHhccccccchHHHH
Confidence 5556555555431 0 01134456667778777654211 111223333333221110001111222
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHH
Q 002400 518 MLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACN 597 (927)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~ 597 (927)
.+.+...+.. ++.. .......++.+...+... +.+ -|..|+.
T Consensus 294 ~~ea~~~i~~-l~~~-~~l~~~a~~~L~~~L~~~-----------------d~~-------------------vr~~aL~ 335 (618)
T 1w63_A 294 LYETVLTIMD-IKSE-SGLRVLAINILGRFLLNN-----------------DKN-------------------IRYVALT 335 (618)
T ss_dssp HHHHHHHHHH-SCCC-HHHHHHHHHHHHHHHTCS-----------------STT-------------------THHHHHH
T ss_pred HHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHhCC-----------------CCc-------------------hHHHHHH
Confidence 3333333333 2211 111223455555555321 111 2567888
Q ss_pred HHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 002400 598 MLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALV 677 (927)
Q Consensus 598 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 677 (927)
.++.++...+..+.+|...+ +.++.+. +..||..|..++..++.. .+ +..+++.++
T Consensus 336 ~L~~i~~~~p~~~~~~~~~i----~~~l~d~-d~~Ir~~alelL~~l~~~------------~n-------v~~iv~eL~ 391 (618)
T 1w63_A 336 SLLKTVQTDHNAVQRHRSTI----VDCLKDL-DVSIKRRAMELSFALVNG------------NN-------IRGMMKELL 391 (618)
T ss_dssp HHHHHHHHHHHHHGGGHHHH----HHGGGSS-CHHHHHHHHHHHHHHCCS------------SS-------THHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHH----HHHccCC-ChhHHHHHHHHHHHHccc------------cc-------HHHHHHHHH
Confidence 89999988777777776655 4445553 789999999999888532 11 233445555
Q ss_pred HHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHH
Q 002400 678 EALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYG 757 (927)
Q Consensus 678 ~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~ 757 (927)
+.+.+. +.+.|..++..++.++...++....| ++.+++.+++....++..++..
T Consensus 392 ~~l~~~----------------------d~e~r~~~v~~I~~la~k~~~~~~~~----v~~ll~lL~~~~~~v~~~~~~~ 445 (618)
T 1w63_A 392 YFLDSC----------------------EPEFKADCASGIFLAAEKYAPSKRWH----IDTIMRVLTTAGSYVRDDAVPN 445 (618)
T ss_dssp HHHHHC----------------------CHHHHHHHHHHHHHHHHSSCCCHHHH----HHHHHHHHHHTGGGSCSSHHHH
T ss_pred HHHHhC----------------------CHHHHHHHHHHHHHHHHHhCccHHHH----HHHHHHHHHhccchhHHHHHHH
Confidence 555443 37889999999999999876554444 4555555665556788888888
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCC---------CCCHhhHHHHHHhc
Q 002400 758 IGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRD---------SIDAAQVVPAWLSC 828 (927)
Q Consensus 758 lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~---------~~~~~~~l~~~l~~ 828 (927)
+..++...++.-... +..|...+.++.. ... +...++.++|......+. .+....+++.+...
T Consensus 446 l~~ii~~~p~l~~~~----v~~L~~~l~~~~~---~~~-~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (618)
T 1w63_A 446 LIQLITNSVEMHAYT----VQRLYKAILGDYS---QQP-LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESV 517 (618)
T ss_dssp HHHHHHHSCSTHHHH----HHHHHHHHHHCCS---CSH-HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHhcChhHHHHH----HHHHHHHHhcccc---cHH-HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHH
Confidence 898888776533223 4444444432211 112 334688889988765322 22223333333332
Q ss_pred CCC-CCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHH
Q 002400 829 LPL-KGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLA 907 (927)
Q Consensus 829 Lp~-~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 907 (927)
+.. .++.+.+..++.++.++....+. ..+.+..++..+.. +.+.|+|.+....++-+.. .| +...
T Consensus 518 l~~~~~~~~vr~~~lta~~Kl~~~~~~--------~~~~l~~~L~~~~~----~~d~evrdRA~~y~~ll~~-~~-~~~~ 583 (618)
T 1w63_A 518 LISNMSTSVTRGYALTAIMKLSTRFTC--------TVNRIKKVVSIYGS----SIDVELQQRAVEYNALFKK-YD-HMRS 583 (618)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHTTCSS--------CHHHHHHHHHHHTT----CSCHHHHHHHHHHHHHHHT-TT-THHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhCcc--------hHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHcC-cH-HHHH
Confidence 211 35667788889999999876532 24566666665542 4578999999999887764 34 4355
Q ss_pred HHHhcCCH
Q 002400 908 STWSSLQP 915 (927)
Q Consensus 908 ~~~~~l~~ 915 (927)
.++..+|+
T Consensus 584 ~vl~~~P~ 591 (618)
T 1w63_A 584 ALLERMPV 591 (618)
T ss_dssp HHHSCCCC
T ss_pred HHhhcCCC
Confidence 67777763
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.70 E-value=6.4e-15 Score=166.49 Aligned_cols=363 Identities=16% Similarity=0.171 Sum_probs=254.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASV 135 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~ 135 (927)
+..++.-+ ++.+++.+..|+..+|+.+++.. -..+..-.+..+-..|++.|.+..++.++..++.+++.|+...
T Consensus 59 i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~-----~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQLQATQAARKLLSREK-----QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSS-----CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCC-----CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34555554 37889999999999999987651 1123233344566788888887667899999999999998643
Q ss_pred CCCC---CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHhhhCCC-----CHHHHHHHHH
Q 002400 136 LPDG---DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA-HGDTLHEVFSKFLGSN-----NFDLRIAALE 206 (927)
Q Consensus 136 ~~~~---~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l~~~-----~~~vr~~a~~ 206 (927)
.... .-...+|.|+.++.+++..+|+.|+.+|+.++...+..-.. .-...++.+...+.++ ...+...++.
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 2100 01247899999999999999999999999998654431111 1123456666666654 3456667788
Q ss_pred HHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHhhccC
Q 002400 207 ATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL-VDVVGSMLQVAEAEA 285 (927)
Q Consensus 207 ~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~ll~~ll~~~~~~~ 285 (927)
++..+. ..-........ +..+++.+..++.++++++...++..+..++........... ..+++.+.
T Consensus 213 ~L~nl~-~~~~~~~~~~~----~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv------- 280 (510)
T 3ul1_B 213 TLSNLC-RNKNPAPPLDA----VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV------- 280 (510)
T ss_dssp HHHHHH-CCCSSCCCHHH----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHH-------
T ss_pred HHHHHh-hcccchhHHHH----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhh-------
Confidence 888887 43222111222 233445555666788999999999999999876543322221 13444444
Q ss_pred chhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHh
Q 002400 286 VFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHH 364 (927)
Q Consensus 286 ~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 364 (927)
+++.++++.++..++.+|+.++.+........+. ..++.+...+.++++.+|..|+|+++.++.........-.-.
T Consensus 281 ---~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~ 357 (510)
T 3ul1_B 281 ---KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357 (510)
T ss_dssp ---HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ---hhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence 5566788999999999999998876653222222 356777888899999999999999999987543333223445
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 365 RLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 365 ~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
.++|.++..+.+ .+..+|..|+++|.+++.....+.+.... ...++.|..+|+..++.++..++.+|..+....+
T Consensus 358 g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 358 GLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp THHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 799999999999 89999999999999999876543321111 2467888999999999999999999999886654
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.70 E-value=1.1e-14 Score=165.79 Aligned_cols=362 Identities=16% Similarity=0.172 Sum_probs=255.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccC
Q 002400 57 LNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 57 ~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
..++.-+ ++.+++.+..|...+|+.+++.+ -..+..-.+..+-..|++.|....++.++..++.++..|+....
T Consensus 79 ~~lv~~l-~s~d~~~q~~a~~~~rklLs~~~-----~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 79 EDIVKGI-NSNNLESQLQATQAARKLLSREK-----QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp HHHHHHH-TSSCHHHHHHHHHHHHHHHTSSS-----CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHcCCC-----CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 3344443 27788999999999999987651 12233334556777888888776678999999999999987532
Q ss_pred CCC---CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHh-HHHHHHHHHhhhCCC-----CHHHHHHHHHH
Q 002400 137 PDG---DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAH-GDTLHEVFSKFLGSN-----NFDLRIAALEA 207 (927)
Q Consensus 137 ~~~---~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~-~~~l~~~l~~~l~~~-----~~~vr~~a~~~ 207 (927)
... .-...+|.|+.++.++++.+++.|+.+|+.++...++.-... -...++.+...+.++ ...+...++.+
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 110 113578999999999999999999999999986543311111 123466677777654 34566677888
Q ss_pred HHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHhhccCc
Q 002400 208 TVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL-VDVVGSMLQVAEAEAV 286 (927)
Q Consensus 208 l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~ll~~ll~~~~~~~~ 286 (927)
+..+. ..-........ +..+++.+..++.++++++...++..+..++........... ..++|.+.
T Consensus 233 L~nl~-~~~~~~~~~~~----~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv-------- 299 (529)
T 3tpo_A 233 LSNLC-RNKNPAPPLDA----VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV-------- 299 (529)
T ss_dssp HHHHH-CCCTTCCCHHH----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHH--------
T ss_pred HHHHH-hcccchhhHHH----HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHH--------
Confidence 88877 43222111222 233455556666788999999999999998876544332221 23445444
Q ss_pred hhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 287 FPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 287 i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
+++.++++.++..++.+|+.++.+........+. ..++.+...+.++++.+|..|+|+|+.++..-......-.-..
T Consensus 300 --~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 300 --KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp --HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred --HHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 5566789999999999999999876653222222 3567788889999999999999999999875433332233456
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
++|.++..+.+ ++..++..|+++|.+++.....+.+.... ...++.|+.+|+..++.++..++.+|..+....+
T Consensus 378 ~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 378 LVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 89999999999 89999999999999999776543321111 2467888999999999999999999999886554
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.69 E-value=2.4e-13 Score=155.92 Aligned_cols=315 Identities=13% Similarity=0.093 Sum_probs=209.6
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHH-HhHHHHHHHHHhhhCC-CCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLI-AHGDTLHEVFSKFLGS-NNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~-~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
...+|.+..+++++++.+|..|+.+|..++......-. -.....++.+.+.+.+ ++++++..|+.++..+. .. +
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls-~~---~ 91 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HH---R 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TS---H
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cC---c
Confidence 45789999999999999999999999999875443211 0123566777777754 48999999999999987 32 1
Q ss_pred hhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHH-HHHHHHHHHHHhhccCchhhhhCCcchhH
Q 002400 220 GEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQ-LVDVVGSMLQVAEAEAVFPGFLAAPEWQK 298 (927)
Q Consensus 220 ~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-l~~ll~~ll~~~~~~~~i~~~l~~~~~~~ 298 (927)
..+..+.. ...++.+..++.++++++...++..+..++...+..-... -...+|.++ +++.+++|+.
T Consensus 92 ~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~----------~ll~~~~~~~ 159 (529)
T 1jdh_A 92 EGLLAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV----------ALLNKTNVKF 159 (529)
T ss_dssp HHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH----------HGGGCCCHHH
T ss_pred hhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH----------HHHhcCCHHH
Confidence 11222221 1234445555667888899999999999987643322211 134566665 5556678999
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCC-CHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhcc
Q 002400 299 HHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDP-HPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMD 375 (927)
Q Consensus 299 r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~ 375 (927)
|..+..+|..++.+.++.-..... ..++.++..+.+. ...++++++.++..++.. +..... .-...++.++..+.
T Consensus 160 ~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll~ 237 (529)
T 1jdh_A 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHh
Confidence 999999999988754432111111 2355555555544 456778888898888753 222122 23478999999999
Q ss_pred CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHH
Q 002400 376 DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY-DAVMPYL 454 (927)
Q Consensus 376 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~L 454 (927)
+ +++.++..++++|.+++...+.. .....+++.|+.++.+.++.++..++.+++.++....+...... ...+|.|
T Consensus 238 ~-~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L 313 (529)
T 1jdh_A 238 D-PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313 (529)
T ss_dssp S-SCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHH
T ss_pred C-CChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Confidence 8 78999999999999999875432 24568899999999999999999999999999754332211111 2345666
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHH
Q 002400 455 KAILVNANDKSNRMLRAKSMECISLV 480 (927)
Q Consensus 455 ~~~l~~~~~~~~~~lr~~a~~~l~~l 480 (927)
...+.... +...++..++.+++.+
T Consensus 314 ~~ll~~~~--~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 314 VRTVLRAG--DREDITEPAICALRHL 337 (529)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHccC--CHHHHHHHHHHHHHHH
Confidence 66664422 1234555555555555
No 45
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.67 E-value=1.1e-10 Score=140.40 Aligned_cols=725 Identities=12% Similarity=0.125 Sum_probs=408.0
Q ss_pred HHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhccCCCC
Q 002400 62 MLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNET--NKSIIKKICDAVSELAASVLPDG 139 (927)
Q Consensus 62 il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~--~~~vr~~~~~~i~~ia~~~~~~~ 139 (927)
.+..+.++..|+.|-..|.++=... +.|. .....|.+.+ +..+|..++.++....+ .+|.+
T Consensus 15 ~~~p~sd~~~r~~A~~~L~~~q~sp----~aw~------------~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~l~~e 77 (980)
T 3ibv_A 15 ALDPSVGPIIKQQATDFIGSLRSSS----TGWK------------ICHEIFSEKTKYKPSTRLICLQTLSEKVR-EWNNE 77 (980)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHHST----THHH------------HHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HCCTT
T ss_pred HhCCCCCHHHHHHHHHHHHHHHcCh----hHHH------------HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-hCChh
Confidence 3333568899999988887654332 2352 2344444432 67889988888888777 55645
Q ss_pred ----CccchHHHHHHHhcC-----CChHHHHHHHHHHHHhhhhh-HHHHHHhHHHHHHHHHhhhCCCCH-HHHHHHHHHH
Q 002400 140 ----DWPELIPFIFQCLVT-----FNDKIQESALLILSRMSQFV-SEVLIAHGDTLHEVFSKFLGSNNF-DLRIAALEAT 208 (927)
Q Consensus 140 ----~w~~ll~~l~~~l~s-----~~~~~r~~al~~l~~l~~~~-~~~l~~~~~~l~~~l~~~l~~~~~-~vr~~a~~~l 208 (927)
....+-..+++++.+ ....+|.....++..++... +......++.++..+ +.++. ......++.+
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~----~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVI----AASSQSEFSNFYLKVL 153 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----HHHCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHh----cCCChhHHHHHHHHHH
Confidence 556666666666542 34567777778887777653 332222334444444 32222 3334455555
Q ss_pred HHHHHhhCCC----ch----hH----Hh-----HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC-cHHHHHHH
Q 002400 209 VNFIMNCLPS----LG----EK----ER-----FLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE-PRFLRKQL 270 (927)
Q Consensus 209 ~~l~~~~~~~----~~----~~----~~-----~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~l 270 (927)
..+-.+..+. +. .. +. +..+.+.+++.+.....+.+++.+..+++++.....-- ...+..
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-- 231 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-- 231 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC--
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc--
Confidence 5444222211 10 01 11 22335555555555554467777777888877776532 222221
Q ss_pred HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHH-----HHHHhccC--CCCHHHHHHH
Q 002400 271 VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVV-----SMVLNSFQ--DPHPRVRWAA 343 (927)
Q Consensus 271 ~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~-----~~l~~~l~--d~~~~vr~~a 343 (927)
..+++.++ ..+.+ ...|.+|+.+|..+.....+. ...+ .++ ..++..+. +.+..++...
T Consensus 232 ~~ll~~l~----------~~L~~--~~~r~~A~ecL~ei~~k~~~~-~~k~-~li~~l~L~~~~~~l~~~~~D~d~~~~l 297 (980)
T 3ibv_A 232 EPCMNLLY----------SFLQI--EELRCAACETMTEIVNKKMKP-LEKL-NLLNILNLNLFFSKSQEQSTDPNFDEHV 297 (980)
T ss_dssp HHHHHHHH----------HHTTS--HHHHHHHHHHHHHHHHSCCCH-HHHH-HHHHHHHHHHHHCC-----CCHHHHHHH
T ss_pred chHHHHHH----------HHcCC--hHHHHHHHHHHHHHHHcCCCh-hhHH-HHHHHHhHHHHHHHHhcccccHHHHHHH
Confidence 45666555 33333 678999999999988754321 1111 111 12223332 4566666555
Q ss_pred HHHHHHhHhhhc-----h-----h---HHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC--------Cccc
Q 002400 344 INAIGQLSTDLG-----P-----E---LQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT--------PDIL 402 (927)
Q Consensus 344 ~~~l~~~~~~~~-----~-----~---~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~--------~~~~ 402 (927)
+..+..+++.+- + + .....+..+++.++.++.+ ++..|...++..+..++.... ....
T Consensus 298 a~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~-~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~ 376 (980)
T 3ibv_A 298 AKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD-DYDETSTAVFPFLSDLLVSLRKESSSKELSASL 376 (980)
T ss_dssp HHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC-SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHH
T ss_pred HHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence 555544433211 1 0 0125677899999999998 788888888877777764321 1233
Q ss_pred cCchHHHHHHHHHHhcCCC----------------hhHHHHHHHHHHHHHHHhhh-hhHHh-HHHHHHHHHHHHhcccCc
Q 002400 403 TPYLDGIVSKLLVLLQNGK----------------QMVQEGALTALASVADSSQG-QFQKY-YDAVMPYLKAILVNANDK 464 (927)
Q Consensus 403 ~~~l~~l~~~L~~~l~~~~----------------~~v~~~a~~al~~l~~~~~~-~~~~~-~~~i~~~L~~~l~~~~~~ 464 (927)
.|++..+++.++..+.-+. ...|...- .+-......+. .+.++ ++.+.+.+.+.+.. ...
T Consensus 377 ~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~-~~~ 454 (980)
T 3ibv_A 377 KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL-SPE 454 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS-CHH
T ss_pred HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc-cCC
Confidence 4677777777777654321 12444443 33333333333 22222 12444444444421 122
Q ss_pred chhhHHHHHHHHHHHHHHhhCcch-----hhhhHHHHHHHHHHHhccCCCCC-C-cchHHHHHHHHHHHHHhccccccch
Q 002400 465 SNRMLRAKSMECISLVGMAVGKDK-----FRDDAKQVMEVLMSLQGSQMEAD-D-PTTSYMLQAWARLCKCLGQEFIPYM 537 (927)
Q Consensus 465 ~~~~lr~~a~~~l~~l~~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~l 537 (927)
..|.-+..++-+++.++..+.... ..+..+.+++.+..+.......+ . .++...+.++++.+.-+.. -..|+
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l 533 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CchhH
Confidence 468888889999999998765311 11344556666666543333211 1 2555566666666554432 23566
Q ss_pred hhhHHHHHH--HcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHH
Q 002400 538 SVVMPPLLQ--SAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID 615 (927)
Q Consensus 538 ~~i~~~ll~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~ 615 (927)
+.+++.++. .+.... . .-+..|+.++..+++.++..+.||++
T Consensus 534 ~~~L~~ll~~~gl~~~~-----------------~-------------------~V~~~a~~af~~f~~~~~~~L~~~~~ 577 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTN-----------------E-------------------RVRPRAWYLFYRFVKSIKKQVVNYTE 577 (980)
T ss_dssp HHHHHHHTSTTTTTCCC-----------------T-------------------TTHHHHHHHHHHHHHHTTTTCSSSHH
T ss_pred HHHHHHHhccccccCCC-----------------h-------------------hHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 666666666 442210 0 01467889999999999999999999
Q ss_pred HHHHHHhhhhcccCc------------H--------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 002400 616 QVAPTLVPLLKFYFH------------E--------EVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPA 675 (927)
Q Consensus 616 ~~~~~l~~~l~~~~~------------~--------~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 675 (927)
.++..+-+++..... + +-+....++++.++... +...+....+++.+++.
T Consensus 578 ~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~----------~~~~e~~~~~l~~ll~p 647 (980)
T 3ibv_A 578 SSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG----------NLTPEEQALYCDSLINA 647 (980)
T ss_dssp HHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS----------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC----------CCCHHHHHHHHHHHHHH
Confidence 999999887763211 1 12455677777777652 22233445566666666
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhhcCCCC--ChhhH-HHHHHHHHHHHHHhhhh------hhhhHHhHHHHHHHHcc--
Q 002400 676 LVEALHKEPEIDICASMLDALNESIQGKDK--TAEER-RIAICIFDDVMEHCREA------ALKYYDTYLPFLLEACN-- 744 (927)
Q Consensus 676 ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~--~~~~r-~~a~~~l~~l~~~~~~~------~~~~~~~ll~~l~~~l~-- 744 (927)
+++.+.. ++..... ....+ .-.+.++|.+++..... +...+.+.++.++..+.
T Consensus 648 l~~~l~~----------------~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~ 711 (980)
T 3ibv_A 648 LIGKANA----------------ALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM 711 (980)
T ss_dssp HHHHHHH----------------HHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH----------------HHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5554331 1110000 01111 12355566666654221 44566678888877776
Q ss_pred CCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHH
Q 002400 745 DKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVV 822 (927)
Q Consensus 745 d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l 822 (927)
..+..+|+.++.++..++...|..+.|+++.++..+...+.... . -.....+|.++..+...+ .+++++
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--------~-~~fL~l~~qli~~f~~~~~~~l~~ll 782 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--------L-VDVLSFISQLIHIYKDNMMEITNRML 782 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--------H-HHHHHHHHHHHHHTTTTSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999995543221 2 235688899998887776 366666
Q ss_pred HHHHhc----CCC--CC-cH----H-HHHHHHHHHHHHHhccCCccc-CC-CCCChhHHHHHHHHHhcCCCCCCcHHHHH
Q 002400 823 PAWLSC----LPL--KG-DL----I-EAKVVHAQLCSMVERSDGEIL-GP-NHQYLPKIVTIFAEVLCGGKDLVTEQTAS 888 (927)
Q Consensus 823 ~~~l~~----Lp~--~~-d~----~-e~~~~~~~l~~l~~~~~~~~~-~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 888 (927)
+.++++ |.. .. |. + -++.-+.++..++.++-..++ .. +..+++.++.-+.++-.. ..+..+.+
T Consensus 783 ~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~---~~d~~~~K 859 (980)
T 3ibv_A 783 PTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANL---VGEPATQK 859 (980)
T ss_dssp HHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC--------CHHHH
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhcc---CCChHHHH
Confidence 665553 432 11 11 1 234445566667754433443 32 234566677666654332 23345666
Q ss_pred HHHHHHHHHHhhC
Q 002400 889 RMINLLRQLQQSL 901 (927)
Q Consensus 889 ~~~~~l~~~~~~~ 901 (927)
....++..+.+..
T Consensus 860 ~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 860 SSIALVSKMVSLW 872 (980)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 6667777766664
No 46
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.66 E-value=3e-11 Score=145.46 Aligned_cols=573 Identities=9% Similarity=0.057 Sum_probs=345.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHH-HHHhhcchhhHHHHHHHHHHHHHh
Q 002400 55 FALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLL-VQLQNETNKSIIKKICDAVSELAA 133 (927)
Q Consensus 55 ~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll-~~l~~~~~~~vr~~~~~~i~~ia~ 133 (927)
.+..+.+++.++.++++...+.-.++..++ |-.++.-....+-..++ ..|. ++.+|..+++|+..|..
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~--------WI~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLH--------WIPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTT--------TSCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------hCCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHc
Confidence 567777777767777887777778887774 75543322334556666 5554 56799999999999987
Q ss_pred ccCCCC--Cccch----HHHHHHHh------------------cCCChHHHHHHHHHHHHhhhhhHHHHH--Hh----HH
Q 002400 134 SVLPDG--DWPEL----IPFIFQCL------------------VTFNDKIQESALLILSRMSQFVSEVLI--AH----GD 183 (927)
Q Consensus 134 ~~~~~~--~w~~l----l~~l~~~l------------------~s~~~~~r~~al~~l~~l~~~~~~~l~--~~----~~ 183 (927)
...+.. ..++. ++.+++.+ .+.+.+..++-+.++..+.+.....+. ++ +.
T Consensus 264 ~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~ 343 (1023)
T 4hat_C 264 LKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL 343 (1023)
T ss_dssp SCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH
Confidence 544211 12221 12222211 112334444455555555554433332 22 22
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhH----------------------------------
Q 002400 184 TLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLL---------------------------------- 229 (927)
Q Consensus 184 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~---------------------------------- 229 (927)
..+..++.+...++.++-..++..|..+....+..+.....|.+++
T Consensus 344 ~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d 423 (1023)
T 4hat_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1023)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccc
Confidence 3344666666667888988889998888732221100111111111
Q ss_pred --------------------------HHHHHHHHHHHhc--CChhHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHHHH
Q 002400 230 --------------------------PLMMRTLTEALNK--GNESSAQEALELLIELAATEP-RFLRKQLVDVVGSMLQV 280 (927)
Q Consensus 230 --------------------------p~ll~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~-~~~~~~l~~ll~~ll~~ 280 (927)
+.+++.+.+.+.+ .+|.....++-++..+++... ....++++.+++.++.+
T Consensus 424 ~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l 503 (1023)
T 4hat_C 424 SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1023)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHh
Confidence 2222222222222 356666666666666665533 34667788888877755
Q ss_pred hhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHH-
Q 002400 281 AEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQ- 359 (927)
Q Consensus 281 ~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~- 359 (927)
.++. -..++...+|..+++++|..++-... -..+++.++..++.++.++++.|+.+||+++..+++.+...+.
T Consensus 504 ~~~~-----~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~ 577 (1023)
T 4hat_C 504 CVKK-----RGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI 577 (1023)
T ss_dssp HHHC-----CSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred hhcc-----ccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5321 00123456777888999987775432 1356889999999999999999999999999999998876552
Q ss_pred ------HHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc-ccCchHHHHHHHHHHhcC--------CC---
Q 002400 360 ------TQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI-LTPYLDGIVSKLLVLLQN--------GK--- 421 (927)
Q Consensus 360 ------~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~l~~--------~~--- 421 (927)
.+|++.++..+...+.. -.+.-+..++.+++.+++..+.+. ...++..+++.+...++. +.
T Consensus 578 ~~~~e~~p~~~~il~~l~~~~~~-l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~ 656 (1023)
T 4hat_C 578 QQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLL 656 (1023)
T ss_dssp CCTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGG
T ss_pred cCCCCCchhHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhc
Confidence 24788888888887776 567777899999999999987543 233555555544443321 11
Q ss_pred ----hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCc----------------chh---hHHHHHHHHHH
Q 002400 422 ----QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDK----------------SNR---MLRAKSMECIS 478 (927)
Q Consensus 422 ----~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~----------------~~~---~lr~~a~~~l~ 478 (927)
.+.--..+.++++++...|..|.|++..+++.+.+..+..... ..+ .+|..++..+.
T Consensus 657 d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~ 736 (1023)
T 4hat_C 657 DSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVE 736 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHH
Confidence 1223446788888999999999999999999988775542110 001 22222333333
Q ss_pred HHHHhhC-cc-hhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHccc--CCCc
Q 002400 479 LVGMAVG-KD-KFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQL--KPDV 554 (927)
Q Consensus 479 ~l~~~~~-~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~--~~~~ 554 (927)
....... .+ .....++.+++.++....... .+..-..++.+++.++..+|..+.++++.++..++..--. +.|
T Consensus 737 ~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~--~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~- 813 (1023)
T 4hat_C 737 TYISKARNLDDVVKVLVEPLLNAVLEDYMNNV--PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD- 813 (1023)
T ss_dssp HHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC--GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC--hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc-
Confidence 3332221 11 122345566665554222211 1122367889999999999999999998888887654310 001
Q ss_pred cccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccc----cHHHHHHHHhhhhcccCc
Q 002400 555 IITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP----WIDQVAPTLVPLLKFYFH 630 (927)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~----~~~~~~~~l~~~l~~~~~ 630 (927)
-+ ...+-+..-.+++..+..++...|.. .++.+++.++-.+.+. +
T Consensus 814 --------------~~----------------~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~-~ 862 (1023)
T 4hat_C 814 --------------FT----------------EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN-N 862 (1023)
T ss_dssp --------------SS----------------SSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC-C
T ss_pred --------------cc----------------cChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC-c
Confidence 00 11233455677788888887776543 4455666565566664 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 002400 631 EEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKE 683 (927)
Q Consensus 631 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e 683 (927)
.++-..+.+.+..++..+... +. ......+.+.++-.++..++..+.+.
T Consensus 863 r~~~~~~l~~~~~ll~~~~~~---~~-~~~~~~f~~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 863 RDVEVNGLQIALDLVKNIERM---GN-VPFANEFHKNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---CS-SHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHhc---CC-hHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 889999999999998876421 00 00123456677777777777777654
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.65 E-value=2.7e-14 Score=166.97 Aligned_cols=499 Identities=10% Similarity=0.033 Sum_probs=297.7
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH---HhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHH
Q 002400 184 TLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF---LDLLPLMMRTLTEALNK-GNESSAQEALELLIELA 259 (927)
Q Consensus 184 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~~~~p~ll~~l~~~l~~-~~~~~~~~a~~~l~~l~ 259 (927)
..++.+...+.++++.+|..|+.+|..+. ...+ .+..+ ...++.+++. +.+ .+.++...++..+..++
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La-~~~~---~~~~i~~~~~~i~~Lv~~----L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLS-KKEA---SRHAIMRSPQMVSAIVRT----MQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHH-TSTT---HHHHHTTCHHHHHHHHHH----HHSCCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHH-CCCh---hHHHHHhccChHHHHHHH----HhcCCCHHHHHHHHHHHHHHh
Confidence 35777778888889999999999999998 4321 11111 1334444444 444 47788888988888877
Q ss_pred ccCcHHHHHHH--HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCC
Q 002400 260 ATEPRFLRKQL--VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPH 336 (927)
Q Consensus 260 ~~~~~~~~~~l--~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~ 336 (927)
.... .+..+ ...++.++ +++++++...|..|+.+|..++........... ...++.++..+.+++
T Consensus 86 ~~~~--~~~~i~~~g~i~~Lv----------~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 153 (644)
T 2z6h_A 86 HHRE--GLLAIFKSGGIPALV----------KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 153 (644)
T ss_dssp TSHH--HHHHHHTTTHHHHHH----------HHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC
T ss_pred cChh--hHHHHHHcCCHHHHH----------HHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC
Confidence 5532 11111 13555555 556677899999999999999976433222222 357889999999999
Q ss_pred HHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch--HHHHHHHH
Q 002400 337 PRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL--DGIVSKLL 414 (927)
Q Consensus 337 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l--~~l~~~L~ 414 (927)
+.++..++.+|..++.........-.-...++.|+..+.+.....++..++.+|.+++..-. ....+ ...++.|+
T Consensus 154 ~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~---~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 154 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS---NKPAIVEAGGMQALG 230 (644)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT---HHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc---cHHHHHHCCCHHHHH
Confidence 99999999999998853222211123346789999999884446778889999999875321 12222 24678888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhh-H
Q 002400 415 VLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDD-A 493 (927)
Q Consensus 415 ~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~-~ 493 (927)
.++.+.+..++..++.+++.++...... .....++|.|...+.. ++..+|..+..+++.++..-. +..... -
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~----~d~~v~~~a~~aL~~L~~~~~-~~~~~v~~ 303 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCNNY-KNKMMVCQ 303 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 8899889999999999999998654331 2334678888888764 346788888889988875311 111100 0
Q ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccc--ccc--chhhhHHHHHHHcccCCCccccCCCCCCCCCCCc
Q 002400 494 KQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQE--FIP--YMSVVMPPLLQSAQLKPDVIITSADSDVDIDDED 569 (927)
Q Consensus 494 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 569 (927)
...++.++.+.... +....++..+..++++++...+++ ... .-...++.+.+.+.... +
T Consensus 304 ~g~v~~Lv~lL~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~----------------~ 366 (644)
T 2z6h_A 304 VGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS----------------H 366 (644)
T ss_dssp TTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTC----------------C
T ss_pred cCCHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccC----------------c
Confidence 12344444432211 111357777888888886422211 000 11245777777774321 0
Q ss_pred chhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccH-HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 002400 570 ESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI-DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648 (927)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~ 648 (927)
. ..+..|+.+|+.++..-... .... ..+++.++.++.+. +..+|+.|+-+++.-
T Consensus 367 ~-------------------~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~-~~~vr~~a~~al~n~---- 421 (644)
T 2z6h_A 367 W-------------------PLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQ---- 421 (644)
T ss_dssp H-------------------HHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH-HHHHTTC------------
T ss_pred h-------------------HHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc-chhhhhHhhhccccc----
Confidence 0 12345677777765421111 0000 12333333433332 333443333221110
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhh
Q 002400 649 KLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAA 728 (927)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 728 (927)
.+.+. ..+..++..+..+|+.++.......
T Consensus 422 ------------------------------~~~~~--------------------~~~~~v~~~a~~aL~~La~~~~~~~ 451 (644)
T 2z6h_A 422 ------------------------------QFVEG--------------------VRMEEIVEGCTGALHILARDVHNRI 451 (644)
T ss_dssp --------------------------------CCS--------------------SCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred ------------------------------hhccc--------------------ccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 00000 1124455566667776665331111
Q ss_pred hhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHH--HHHHHHHHhhcCCCCCCchhhhHHHHHHHHHH
Q 002400 729 LKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVG--EALSRLDFVIRHPNALHSDNVMAYDNAVSALG 806 (927)
Q Consensus 729 ~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~--~il~~L~~~l~~~~~~~~~~~~~~~na~~al~ 806 (927)
.-.-...+|.++..+.++++.++..|+++|+.++.. ......+. ..++.|..++.++ +..++.+|+.+++
T Consensus 452 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~------~~~vr~~A~~aL~ 523 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSR------NEGVATYAAAVLF 523 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCC------CHHHHHHHHHHHH
Confidence 111236788999999999999999999999998753 11222221 2456777777654 4669999999999
Q ss_pred HHHhhc
Q 002400 807 KICQFH 812 (927)
Q Consensus 807 ~l~~~~ 812 (927)
++....
T Consensus 524 ~l~~~~ 529 (644)
T 2z6h_A 524 RMSEDK 529 (644)
T ss_dssp HHTTTS
T ss_pred HHhccC
Confidence 987654
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.64 E-value=8e-14 Score=159.84 Aligned_cols=394 Identities=10% Similarity=0.048 Sum_probs=255.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhc
Q 002400 55 FALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAAS 134 (927)
Q Consensus 55 ~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~ 134 (927)
.++.|...+. +.++.+|..|+..|.+.....+ ....+- .....-..|++.|.+.+++.+|..++.++..++..
T Consensus 18 ~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~----~~~~~~--~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 18 AIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEA----SRHAIM--RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp HHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHH----HHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCc----cHHHHH--hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 4677777765 6788999999999988764420 000000 01234567777787655788999999999998754
Q ss_pred cCCCC--CccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHh-HHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 002400 135 VLPDG--DWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAH-GDTLHEVFSKFLGSNNFDLRIAALEATVNF 211 (927)
Q Consensus 135 ~~~~~--~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~-~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l 211 (927)
..+.. .-...+|.++++++++++.++..++.+|..++...+..-... -...++.+.+.+.+++.+++..++.++..+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 21100 013588999999999999999999999999987633211111 246788999999999999999999999988
Q ss_pred HHhhCCCchhHHhH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHhhccCchh
Q 002400 212 IMNCLPSLGEKERF--LDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL-VDVVGSMLQVAEAEAVFP 288 (927)
Q Consensus 212 ~~~~~~~~~~~~~~--~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~ll~~ll~~~~~~~~i~ 288 (927)
. .. ++.....+ ...+|.+++.+.. ...+.....+...+..++..+. .-.... ...++.++
T Consensus 171 a-~~--~~~~~~~i~~~~~i~~L~~ll~~---~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~~~~L~---------- 233 (529)
T 1jdh_A 171 A-YG--NQESKLIILASGGPQALVNIMRT---YTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALG---------- 233 (529)
T ss_dssp H-TT--CHHHHHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHH----------
T ss_pred H-hC--CHHHHHHHHHCCCHHHHHHHHHh---CChHHHHHHHHHHHHHHhcCcc-cHHHHHHCCCHHHHH----------
Confidence 7 31 22212222 1345655555542 2345555567777777775432 111111 23555555
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+.+.+++...++.++.+|+.++...+.. .....+++.+.+.+.++++.+|..|+++++.++..-......-.-...++
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 311 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Confidence 5556678889999999999999865431 23457889999999999999999999999999874322221122345788
Q ss_pred HHHHhccCC-CCchHHHHHHHHHHHhHhcCCCcc-ccC-c-hHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHhhhhh
Q 002400 369 ALVGAMDDF-QNPRVQAHAASAVLNFSENCTPDI-LTP-Y-LDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQGQF 443 (927)
Q Consensus 369 ~ll~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~-~~~-~-l~~l~~~L~~~l~~~~-~~v~~~a~~al~~l~~~~~~~~ 443 (927)
.+++.+.+. .++.++..|+.+|.+++...+... ... . -...++.|..++.+.+ +.++..++++++.++......
T Consensus 312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~- 390 (529)
T 1jdh_A 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH- 390 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-
Confidence 888888651 347999999999999976543210 000 0 1134677888888776 589999999999998532221
Q ss_pred HHhH-HHHHHHHHHHHhcccCcchhhHHHHHHHHHHH
Q 002400 444 QKYY-DAVMPYLKAILVNANDKSNRMLRAKSMECISL 479 (927)
Q Consensus 444 ~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~ 479 (927)
..+. ..++|.|...+.. .+..+|..+..+++.
T Consensus 391 ~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 391 APLREQGAIPRLVQLLVR----AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHTTHHHHHHHHHHH----HHHHHC---------
T ss_pred HHHHHcCCHHHHHHHHHH----HhHHHHHHHhcccCc
Confidence 2222 3577888888764 345566666555554
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.62 E-value=1.4e-13 Score=155.39 Aligned_cols=384 Identities=13% Similarity=0.131 Sum_probs=264.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh--hChh-------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccc
Q 002400 21 HFETLISNLMSSSNEHRSHAEVLLSHLRQ--SHPD-------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSF 91 (927)
Q Consensus 21 ~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~--~~p~-------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~ 91 (927)
.+.++++.+.|+|.+.+.+|.+.+..+-. .+|. +.++.|++.|..+.++.++..|+-.|.|.....
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~----- 132 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT----- 132 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-----
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----
Confidence 48899999999999999999999887532 2442 257889999987788999999999999887543
Q ss_pred cccccCHhHHHH-----HHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC---CccchHHHHHHHhcCCCh-----H
Q 002400 92 IFTRLAPSTQAN-----LKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG---DWPELIPFIFQCLVTFND-----K 158 (927)
Q Consensus 92 ~w~~l~~~~~~~-----ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~l~s~~~-----~ 158 (927)
++.+.. ....|+..|.++ +..+|..++.+++.|+....... .-...++.++.++.+.+. .
T Consensus 133 ------~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 133 ------SEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp ------HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred ------HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH
Confidence 222222 345677878765 89999999999999986321100 113467888888876543 3
Q ss_pred HHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHH
Q 002400 159 IQESALLILSRMSQFVSE-VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRT 235 (927)
Q Consensus 159 ~r~~al~~l~~l~~~~~~-~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~ 235 (927)
.+..+..++..++..... .-......++|.+.+.+.+++++++..|+.++..+. ..- ......+ ...+|.
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~-~~~--~~~~~~i~~~g~i~~---- 278 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT-DGP--NERIEMVVKKGVVPQ---- 278 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSC--HHHHHHHHTTTCHHH----
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh-hch--hhhHHHHHhcccchh----
Confidence 466777888877754221 111235678999999999999999999999999988 421 1111111 123444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhch
Q 002400 236 LTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCS 314 (927)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~ 314 (927)
+..++.+++..+...++..+..++...+......+. ..+ +.+..++++++...|+.|+++|+.++.+..
T Consensus 279 Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l----------~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 279 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL----------AVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG----------GGCC-CTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred hhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch----------HHHHHHhcCCCHHHHHHHHHHHHHHHcCcH
Confidence 445556788888899999998887654332221111 112 334467778899999999999999998876
Q ss_pred HHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHH-HhHhhHHHHHHHhccCCCCchHHHHHHHHHHH
Q 002400 315 KVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQT-QFHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392 (927)
Q Consensus 315 ~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~ 392 (927)
+....... .+++.++..+.+.++.+|..|+|+|+.++....++... -.-..+++.|+..|.. +++.++..+..+|.+
T Consensus 349 ~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 349 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 64443333 47888899999999999999999999998765443211 2235689999999998 899999999999999
Q ss_pred hHhcCCCc-cccCc---hH--HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 393 FSENCTPD-ILTPY---LD--GIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 393 l~~~~~~~-~~~~~---l~--~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
+++..... ...+| +. ..++.+..+..+.+..+++.|...|..
T Consensus 428 il~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 428 IFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88643210 01112 11 124455555566677777776555443
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.60 E-value=1.9e-12 Score=148.61 Aligned_cols=504 Identities=13% Similarity=0.122 Sum_probs=314.1
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+.+++++...|+.+..++..+++..++. +--+++.+.+.++|+|+.+|..|+.+++.+.. ..+.+.++|
T Consensus 81 kl~~s~~~~~Krl~YL~l~~~~~~~~e~----~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~~l~~ 149 (621)
T 2vgl_A 81 NLLSSNRYTEKQIGYLFISVLVNSNSEL----IRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAEAFAG 149 (621)
T ss_dssp HGGGCSCHHHHHHHHHHHHHSCCCCHHH----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCcHH----HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHHHHHH
Confidence 5667889999999999999999987752 33456788889999999999999999999864 346778999
Q ss_pred HHHHhc--cCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHh
Q 002400 369 ALVGAM--DDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKY 446 (927)
Q Consensus 369 ~ll~~l--~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 446 (927)
.+.+++ .| +++.||..|+.++..+.+..+ +.+. + +.+++.+..++++.++.|+..++.++..++...+..+.++
T Consensus 150 ~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p-~~~~-~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 150 EIPKILVAGD-TMDSVKQSAALCLLRLYRTSP-DLVP-M-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp HHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCG-GGCC-C-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHHHHHHhCh-hhcC-c-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 999999 88 899999999999999998654 4443 2 3556777778889999999999999999998887777788
Q ss_pred HHHHHHHHHHHHhcccC--cc-------hhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCC-----CC
Q 002400 447 YDAVMPYLKAILVNAND--KS-------NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEA-----DD 512 (927)
Q Consensus 447 ~~~i~~~L~~~l~~~~~--~~-------~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-----~~ 512 (927)
++.++..|.+++..... ++ +.-++...++.++.++..-. ........+++..+++........ ..
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n 304 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED-PAVRGRLTECLETILNKAQEPPKSKKVQHSN 304 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhhccCcccccccccc
Confidence 88888888887754211 01 23455556666655432111 122222223333333211000000 00
Q ss_pred cchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhH
Q 002400 513 PTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEK 592 (927)
Q Consensus 513 ~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 592 (927)
.-..-++.+...+... + ...+++..+++.+...+... +. +-|
T Consensus 305 ~~~aVl~ea~~~i~~l-~-~~~~~~~~~~~~L~~~L~~~-----------------~~-------------------nir 346 (621)
T 2vgl_A 305 AKNAVLFEAISLIIHH-D-SEPNLLVRACNQLGQFLQHR-----------------ET-------------------NLR 346 (621)
T ss_dssp HHHHHHHHHHHHHHHH-C-CCHHHHHHHHHHHHHHSSCS-----------------CH-------------------HHH
T ss_pred hHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHhcCC-----------------Cc-------------------chH
Confidence 0012233444444332 2 34455666677766666321 11 224
Q ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHhhhhc-ccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 002400 593 ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK-FYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDY 671 (927)
Q Consensus 593 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (927)
-.|+..+..++...+. .+++......++.++. + .+..||..+..++..++.. .-+..
T Consensus 347 y~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d-~d~~Ir~~aL~lL~~l~~~-------------------~Nv~~ 404 (621)
T 2vgl_A 347 YLALESMCTLASSEFS--HEAVKTHIETVINALKTE-RDVSVRQRAVDLLYAMCDR-------------------SNAQQ 404 (621)
T ss_dssp HHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCH-------------------HHHHH
T ss_pred HHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHHcCh-------------------hhHHH
Confidence 5677777777654321 1234444455556666 4 3789999999998888532 12345
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHH
Q 002400 672 IIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVR 751 (927)
Q Consensus 672 il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr 751 (927)
++..+.+.+.+. +.+.|..++..++.++...++...-|+..+ ++.+.+....+.
T Consensus 405 Iv~eL~~yl~~~----------------------d~~~~~~~v~~I~~la~k~~~~~~~~v~~L----l~ll~~~~~~v~ 458 (621)
T 2vgl_A 405 IVAEMLSYLETA----------------------DYSIREEIVLKVAILAEKYAVDYTWYVDTI----LNLIRIAGDYVS 458 (621)
T ss_dssp HHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHCSSTHHHHHHH----HHHHHHHGGGSC
T ss_pred HHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHH----HHHHHhhcccch
Confidence 555555555442 366788888888888877665544444444 444443333466
Q ss_pred hhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCC--CCHhhHHHHHHhcC
Q 002400 752 QAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDS--IDAAQVVPAWLSCL 829 (927)
Q Consensus 752 ~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~--~~~~~~l~~~l~~L 829 (927)
+.++..+..++...+ .+..| ++..|...+.++..+ ..+...++..+|......+.. +...+++..+.+.+
T Consensus 459 ~ev~~~l~~ii~~~~-~~~~~---~~~~l~~~l~~~~~~----~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~ 530 (621)
T 2vgl_A 459 EEVWYRVIQIVINRD-DVQGY---AAKTVFEALQAPACH----ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKF 530 (621)
T ss_dssp SHHHHHHHHHHGGGC-SCHHH---HHHHHHHHHTSSSCC----HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCh-hHHHH---HHHHHHHHHcCccch----HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHh
Confidence 666777777776654 35555 355667777766432 234445557777765543322 22235677777777
Q ss_pred CCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHH
Q 002400 830 PLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLAST 909 (927)
Q Consensus 830 p~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 909 (927)
.. ++.+.+..++.++.+++... |.. .+.+..+|...... ++.+.|+|.+....++-+... +++....+
T Consensus 531 ~~-~~~~v~~~~Lta~~Kl~~~~-p~~-------~~~i~~~l~~~~~~--~~~d~evrdRA~~y~~Ll~~~-~~~~~~~v 598 (621)
T 2vgl_A 531 HL-CSVPTRALLLSTYIKFVNLF-PEV-------KATIQDVLRSDSQL--KNADVELQQRAVEYLRLSTVA-STDILATV 598 (621)
T ss_dssp TT-SCHHHHHHHHHHHHHHHHHC-GGG-------HHHHHHHHSSHHHH--SCSSHHHHHHHHHHHHHHHSS-CSTTTTTT
T ss_pred cc-CCHHHHHHHHHHHHHHHHHC-hHH-------HHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHccC-HHHHHHHH
Confidence 54 45667788889999988654 321 33444444333220 145789999999988876533 23323455
Q ss_pred HhcCC
Q 002400 910 WSSLQ 914 (927)
Q Consensus 910 ~~~l~ 914 (927)
+..+|
T Consensus 599 l~~~P 603 (621)
T 2vgl_A 599 LEEMP 603 (621)
T ss_dssp SSSCC
T ss_pred hhcCC
Confidence 56665
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.60 E-value=3.8e-13 Score=152.94 Aligned_cols=385 Identities=12% Similarity=0.111 Sum_probs=263.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh--Chh-------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccc
Q 002400 20 AHFETLISNLMSSSNEHRSHAEVLLSHLRQS--HPD-------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTS 90 (927)
Q Consensus 20 ~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~--~p~-------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~ 90 (927)
+.+.++++.+.|+|.+.+.+|.+.+..+-.. +|. +.++.|++.+..+.++.++..|+-.|.+.....
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~---- 151 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT---- 151 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC----
Confidence 3578899999999999999999988765321 331 357889999987888999999999999887543
Q ss_pred ccccccCHhHH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC---CccchHHHHHHHhcCCCh-----
Q 002400 91 FIFTRLAPSTQ-----ANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG---DWPELIPFIFQCLVTFND----- 157 (927)
Q Consensus 91 ~~w~~l~~~~~-----~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~l~s~~~----- 157 (927)
.+.. ......|+..|.++ +..+|..++.+++.|+....... .-...++.|+.++.+.+.
T Consensus 152 -------~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 152 -------SEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp -------HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred -------HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 1121 12346677777765 89999999999999986421100 012457778888865442
Q ss_pred HHHHHHHHHHHHhhhhhHHH-HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHH
Q 002400 158 KIQESALLILSRMSQFVSEV-LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMR 234 (927)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~-l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~ 234 (927)
.....+..++..++...... -......++|.+.+.+.+++++++..|+.++..+. ..- ......+ ...+|.+
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~-~~~--~~~~~~v~~~g~i~~L-- 298 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT-DGP--NERIEMVVKKGVVPQL-- 298 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-SSC--HHHHHHHHTTTCHHHH--
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh-hhh--hhhHHHHHhccchHHH--
Confidence 35667788888877543221 11235678999999999999999999999999988 421 1111111 2344444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc
Q 002400 235 TLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC 313 (927)
Q Consensus 235 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~ 313 (927)
..++.+++..+...++.++..++...+......+. ..++ .+..++++++...|..|+++|+.++.+.
T Consensus 299 --v~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~----------~L~~LL~~~~~~i~~~a~~aL~nl~~~~ 366 (529)
T 3tpo_A 299 --VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA----------VFPSLLTNPKTNIQKEATWTMSNITAGR 366 (529)
T ss_dssp --HHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG----------GHHHHTTCSSHHHHHHHHHHHHHHHTSC
T ss_pred --HHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH----------HHHHHHcCCCHHHHHHHHHHHHHHhccc
Confidence 44556788888899999999988654332221111 2233 3336677888999999999999999887
Q ss_pred hHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhccCCCCchHHHHHHHHHH
Q 002400 314 SKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMDDFQNPRVQAHAASAVL 391 (927)
Q Consensus 314 ~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~~~v~~~a~~al~ 391 (927)
.+.....+. .++|.++..+.+.++.+|..|+|+|+.++....++.... .-..+++.|+..|.. +++.++..++.+|.
T Consensus 367 ~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 367 QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAIS 445 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 664443333 478888899999999999999999999987644432121 234689999999998 89999999999999
Q ss_pred HhHhcCCCc-cccCchHH-----HHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 392 NFSENCTPD-ILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 392 ~l~~~~~~~-~~~~~l~~-----l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
++....... ...+|... .++.+..+..+.+..+++.|...|..
T Consensus 446 nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 446 NIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 987543210 01111111 23445555566777787777665544
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.58 E-value=4.2e-11 Score=137.44 Aligned_cols=350 Identities=12% Similarity=0.167 Sum_probs=242.1
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchH
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELI 145 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll 145 (927)
+.+...|+++-+.+....... ++.--.+-+.+.+-|.+. ++.+|..+..+++.|... .-.+.++
T Consensus 85 s~~~~~Krl~YL~l~~~~~~~-----------~e~~~L~iN~l~kDl~~~-n~~ir~lALr~L~~i~~~----e~~~~l~ 148 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNSN-----------SELIRLINNAIKNDLASR-NPTFMGLALHCIANVGSR----EMAEAFA 148 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCCC-----------HHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHCCH----HHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHccCC-----------cHHHHHHHHHHHHhcCCC-CHHHHHHHHHHhhccCCH----HHHHHHH
Confidence 778999999999988777543 333344556666667764 899999988888888542 2446788
Q ss_pred HHHHHHh--cCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHH
Q 002400 146 PFIFQCL--VTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKE 223 (927)
Q Consensus 146 ~~l~~~l--~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 223 (927)
+.+.+++ .+.++.+|..|+.++..+....++.+.. +.+++.+.+.+.|+++.|+.+|+.++..+. .. ...
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~-~~-----~~~ 220 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLA-QK-----NPE 220 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHH-HH-----CHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHH-Hh-----ChH
Confidence 8888999 8899999999999999999877654331 356777788888999999999999999988 42 124
Q ss_pred hHHhhHHHHHHHHHHHHhcC-------------ChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhh
Q 002400 224 RFLDLLPLMMRTLTEALNKG-------------NESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGF 290 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~~l~~~-------------~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~ 290 (927)
.+..++|.+++.+.+++..+ ++-.....++.+..++..+..-....+..+++.++..+.+.+- ...
T Consensus 221 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~k-s~~ 299 (621)
T 2vgl_A 221 EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK-SKK 299 (621)
T ss_dssp HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCS-CSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcc-ccc
Confidence 57788999998888877543 3344555666665555432223333343444444322211100 001
Q ss_pred hCCcc--hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 291 LAAPE--WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 291 l~~~~--~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+++.+ ..+...++.++-.+.. . .+.+...+..+...+.++++.+|..++.++..++...+. ...+....+
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~--~---~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~ 371 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDS--E---PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIE 371 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHH
T ss_pred ccccchHHHHHHHHHHHHHhcCC--c---HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHH
Confidence 11111 2444445555544431 1 134556677777888889999999999999999875421 134556677
Q ss_pred HHHHhcc-CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 369 ALVGAMD-DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 369 ~ll~~l~-~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
.++.++. | ++..||..+...+..++.. ..+..++..|...+.+.+...+..++.+|+.++....+.+.-|+
T Consensus 372 ~i~~~L~~d-~d~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v 443 (621)
T 2vgl_A 372 TVINALKTE-RDVSVRQRAVDLLYAMCDR-------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYV 443 (621)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHhccC-CCHhHHHHHHHHHHHHcCh-------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888888 7 8899999999998888643 23678888888888888999999999999999987776666666
Q ss_pred HHHHHHHHH
Q 002400 448 DAVMPYLKA 456 (927)
Q Consensus 448 ~~i~~~L~~ 456 (927)
+.++..+..
T Consensus 444 ~~Ll~ll~~ 452 (621)
T 2vgl_A 444 DTILNLIRI 452 (621)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.4e-13 Score=139.08 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=168.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhC-CcchhHHHHHHHHHHHHhhhch
Q 002400 236 LTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLA-APEWQKHHAVLIALAQIAEGCS 314 (927)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~-~~~~~~r~aal~al~~i~~~~~ 314 (927)
+.+.+++.++..+..++..+..+++..+.+....+..+++.+. ..+. |.+..+|.+|+.+++.++.+.+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~----------~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALK----------KVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHH----------HHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHH----------HHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 4445568899999999999999887643333333456666555 4453 6889999999999999999888
Q ss_pred HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhH
Q 002400 315 KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFS 394 (927)
Q Consensus 315 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~ 394 (927)
..+.++...++|.++..+.|+++.||.+|..++..++...+ +..++|.+...+.+ +++.+|..++..|..++
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN-KNPSVKSETALFIARAL 161 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999987543 35788999999999 89999999999999988
Q ss_pred hcCCCc-cccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHH
Q 002400 395 ENCTPD-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ-FQKYYDAVMPYLK 455 (927)
Q Consensus 395 ~~~~~~-~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~L~ 455 (927)
...+++ ...+|++.+++.+..++++.++.+|..+..+++.++...|+. +.+|++.+-+.-.
T Consensus 162 ~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~ 224 (242)
T 2qk2_A 162 TRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKM 224 (242)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHH
T ss_pred HHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHH
Confidence 877544 456899999999999999999999999999999999999986 7777766544333
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.3e-14 Score=141.17 Aligned_cols=204 Identities=13% Similarity=0.182 Sum_probs=170.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHH-HHccCcHHH--HHHHHHHHHHHHHHhhccCchhhhh-CCcchhHHHHHHHHHHHHhh
Q 002400 236 LTEALNKGNESSAQEALELLIE-LAATEPRFL--RKQLVDVVGSMLQVAEAEAVFPGFL-AAPEWQKHHAVLIALAQIAE 311 (927)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~l~~ll~~ll~~~~~~~~i~~~l-~~~~~~~r~aal~al~~i~~ 311 (927)
+.+.+.+.+|..+..+++.+.. +++..+++. ...+..++..+. ..+ ++.+..+|.+|+.+++.+++
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~----------~~l~~D~n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG----------HIIQKDANIQAVALAAQSVELICD 90 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHH----------HHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHH----------HHhccCCCHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999 876555444 333345565555 344 46889999999999999999
Q ss_pred hch-HHHH-hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHH
Q 002400 312 GCS-KVMI-KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASA 389 (927)
Q Consensus 312 ~~~-~~~~-~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~a 389 (927)
+.. ..+. +|...++|.++..+.|..+.||.++..++..+++.+.+.....+++.+++.++..+++ +++.+|..++.+
T Consensus 91 ~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~ 169 (249)
T 2qk1_A 91 KLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-KTPQIRMECTQL 169 (249)
T ss_dssp HHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-CChHHHHHHHHH
Confidence 887 6777 8999999999999999999999999999999999876533112378899999999998 899999999999
Q ss_pred HHHhHhcCCC--ccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh-hHHhHHHH
Q 002400 390 VLNFSENCTP--DILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ-FQKYYDAV 450 (927)
Q Consensus 390 l~~l~~~~~~--~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i 450 (927)
|..+++..+. ..+.+|+ +.+++.+.+++.+.++.||..++.+++.+...+|+. |.||++.+
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999988764 4566899 999999999999999999999999999999999974 77877665
No 55
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.1e-08 Score=115.20 Aligned_cols=582 Identities=13% Similarity=0.089 Sum_probs=317.3
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHh--cCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHH-hhh
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCL--VTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFS-KFL 193 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l--~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~-~~l 193 (927)
+..+.--+.-.+..+.++. -.||+ +.+++..+ ....+++|..++.++..+.+..++.+...+..++..+. ..=
T Consensus 146 ~~~~~~~l~~~~~l~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 221 (778)
T 3opb_A 146 DTHVTYLLSIILQLLNKFK---YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAE 221 (778)
T ss_dssp SSCHHHHHHHHHHHHHHSC---CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHcC---ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhc
Confidence 4456655555555555554 36888 88887755 46778999999999999999999887777777776333 221
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-
Q 002400 194 GSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL- 270 (927)
Q Consensus 194 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l- 270 (927)
.+.+.+-...++.++..++ +..++- -...| ..+.|.+.+.+. ...+......+++.+...|.+... +.++
T Consensus 222 ~~~~~~~~~~~~~~l~~lf-Pi~p~~-~s~lfl~e~~~~~l~~~~~---~~~~~~~~~a~L~lLsaACi~~~c--R~~I~ 294 (778)
T 3opb_A 222 IDVGNDPLSIIVKTLSELY-PSLTTL-CSEIFLTKGLSKLFKKRVF---EEQDLQFTKELLRLLSSACIDETM--RTYIT 294 (778)
T ss_dssp HTCSSCHHHHHHHHHHHHT-TTTHHH-HHHHHSTTTHHHHHHHHHH---SSCCHHHHHHHHHHHHHHCCSHHH--HHHHH
T ss_pred cCCCCccHHHHHHHHHHHh-cCCHHH-HHHHHccccHHHHHHHHHh---cccchHHHHHHHHHHHHHhCCcHH--HHHHH
Confidence 2211122334444444444 322110 01111 123444443332 234556667778888777755321 2222
Q ss_pred HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 271 VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 271 ~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
...++.+. +.+++ -..|..|...|..+...... -...+..+.+.+.+.|.++....|.-|++.|+.+
T Consensus 295 ~~~~~~L~----------~~l~~--~~ir~lAavvL~KL~~~~~~-~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYL 361 (778)
T 3opb_A 295 ENYLQLLE----------RSLNV--EDVQIYSALVLVKTWSFTKL-TCINLKQLSEIFINAISRRIVPKVEMSVEALAYL 361 (778)
T ss_dssp HHHHHHHH----------HHTTS--GGGHHHHHHHHHHHTGGGTC-TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHH----------HHhcc--HHHHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 23333332 44444 35677777777776654321 1234667888888888887666699999999988
Q ss_pred HhhhchhHHH--HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc-cCchHHHHHHHHHHhcCCChhHHH-
Q 002400 351 STDLGPELQT--QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL-TPYLDGIVSKLLVLLQNGKQMVQE- 426 (927)
Q Consensus 351 ~~~~~~~~~~--~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~l~~l~~~L~~~l~~~~~~v~~- 426 (927)
+.. ++... ..-..+++.|++.+.+..+..+.-.+...|.+++...+.... .+-+ ..|.+..+...+....
T Consensus 362 Sl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l----~~Lk~~A~~~~p~~~~~ 435 (778)
T 3opb_A 362 SLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXX----XXXXXXXXXXXPAADKV 435 (778)
T ss_dssp TTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----------------------C
T ss_pred hCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhh----hhhhhhccccCcccCcc
Confidence 753 33322 223456888888887535667888889999999876543111 1111 2222222211111000
Q ss_pred -HHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhH-HHHHHHHHHHh
Q 002400 427 -GALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMSLQ 504 (927)
Q Consensus 427 -~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~~ 504 (927)
..+.-=..+.......+ .-..++|.|...+.. +....|..+..++..++..- +.-...+ ...++.++.+.
T Consensus 436 d~~~~~~~~v~~~~~~~l--~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL 507 (778)
T 3opb_A 436 GAEKAAKEDILLFNEKYI--LRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYL 507 (778)
T ss_dssp CTHHHHHHHHHHHHHHHT--TTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHH--HHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHH
Confidence 00000000000000000 112478888877654 34568888899998887431 1111111 23455666654
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhccc--cccch-hhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCce
Q 002400 505 GSQMEADDPTTSYMLQAWARLCKCLGQE--FIPYM-SVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKR 581 (927)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~l-~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (927)
.......+..+..+..++.++.....+. |..|- ...+|.|++.+...++... .. -. +++..
T Consensus 508 ~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~-~~-----l~-~~~~~--------- 571 (778)
T 3opb_A 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDD-NP-----LH-NDEQI--------- 571 (778)
T ss_dssp TCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSS-CC---------CCCC---------
T ss_pred hcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccc-cc-----cc-ccccc---------
Confidence 4332211236788888999888544322 22221 2788999999863221100 00 00 00000
Q ss_pred eeechhhHHhHHHHHHHHHHHHHHhc---ccccc-cHH--HHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002400 582 IGIKTSVLEEKATACNMLCCYADELK---EGFFP-WID--QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKG 655 (927)
Q Consensus 582 ~~~~~~~~~~k~~a~~~l~~l~~~~~---~~~~~-~~~--~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~ 655 (927)
..-.+..|+.+|..++..-. +.... .+. ..++.+..++.+. +..||++|+.+++.+.........+-
T Consensus 572 ------~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~ 644 (778)
T 3opb_A 572 ------KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKF 644 (778)
T ss_dssp ------CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred ------cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 00124568888888886431 11111 233 3667777777664 88999999999999975321000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHH--
Q 002400 656 QSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYD-- 733 (927)
Q Consensus 656 ~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-- 733 (927)
..... +-...-++.|+..+..+ +...|..|.++|+.+....+..+...+.
T Consensus 645 -~~~~~-----~~~~~rL~lLV~Ll~s~----------------------D~~~r~AAagALAnLts~~~~ia~~ll~~~ 696 (778)
T 3opb_A 645 -FNLEN-----PQSLRNFNILVKLLQLS----------------------DVESQRAVAAIFANIATTIPLIAKELLTKK 696 (778)
T ss_dssp -SCCSS-----HHHHHHHHHHHHGGGCS----------------------CHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred -HhhcC-----chhhccHHHHHHHHcCC----------------------CHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence 00000 00011244555555443 4788999999999987665554444333
Q ss_pred hHHHHHHHHccC--CChhHHhhHhHHHHHHHhhc-----CCCcHHHH--HHHHHHHHHhhcCC
Q 002400 734 TYLPFLLEACND--KHPDVRQAAVYGIGVCAEFG-----GSVFKPLV--GEALSRLDFVIRHP 787 (927)
Q Consensus 734 ~ll~~l~~~l~d--~~~~vr~~a~~~lg~l~~~~-----~~~~~~~~--~~il~~L~~~l~~~ 787 (927)
..++.++..+.+ +++.+|.+++.++..++... ++.+..+. +.....|..++..+
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred ccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 577788888887 89999999999999999732 24555554 45555556565544
No 56
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.46 E-value=3.1e-09 Score=127.11 Aligned_cols=416 Identities=13% Similarity=0.168 Sum_probs=255.2
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC-----CchHHHHHHHHHHHhHhcCCCccccCchHH
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ-----NPRVQAHAASAVLNFSENCTPDILTPYLDG 408 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~-----~~~v~~~a~~al~~l~~~~~~~~~~~~l~~ 408 (927)
..+|..+.+++|++|.++..+.++....++..+++.|+..... + .+.++...++.++++.+..... ..|++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~-~~~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~ 566 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ-KRGKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKT 566 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc-ccccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHH
Confidence 3579999999999999998777655568999999999987765 3 3456677788999988876533 468999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh--------HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHH
Q 002400 409 IVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF--------QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLV 480 (927)
Q Consensus 409 l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~--------~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l 480 (927)
++..++..+.+.++.|+++|+.++..++..++..| .||++.++..+......... .-....++++|.+
T Consensus 567 vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~----~~~~~lyeav~~v 642 (1073)
T 3gjx_A 567 VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQP----QQVHTFYEAVGYM 642 (1073)
T ss_dssp HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 36888888887777554322 2233458999999
Q ss_pred HHhhCcch-hhhhHHHHHHHHHHHhccC---------CCCC-C--cchHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Q 002400 481 GMAVGKDK-FRDDAKQVMEVLMSLQGSQ---------MEAD-D--PTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQS 547 (927)
Q Consensus 481 ~~~~~~~~-~~~~~~~i~~~l~~~~~~~---------~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~ 547 (927)
+.++|.+. -..++..+|+.....++.. .-.| + .....++++...+|..+|..|.+++..+.+.+++.
T Consensus 643 i~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~ 722 (1073)
T 3gjx_A 643 IGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV 722 (1073)
T ss_dssp HTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99998654 3445565555444322110 0001 1 12344566667778888888888887777766655
Q ss_pred cccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhccccc--ccHHHHHHHHhhhh
Q 002400 548 AQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLL 625 (927)
Q Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~l 625 (927)
.+.- .+.+...+..-|.... |.+. .
T Consensus 723 y~~~--------------------------------------------s~~i~~~v~~~g~~~~~~~~~~--------~- 749 (1073)
T 3gjx_A 723 YKCL--------------------------------------------SENISAAIQANGEMVTKQPLIR--------S- 749 (1073)
T ss_dssp HHHH--------------------------------------------HHHHHHHHHHHCGGGGSSHHHH--------H-
T ss_pred HHHH--------------------------------------------HHHHHHHHHhCCchhhccHHHH--------H-
Confidence 4210 0001111111111000 0000 0
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCC
Q 002400 626 KFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDK 705 (927)
Q Consensus 626 ~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~ 705 (927)
-..||+...+++...+.. ..+ .......++|.+++.+-.|- . ..
T Consensus 750 ----~r~ik~eil~l~~~~i~~-----------~~~---~~~v~~~~i~pl~~~vl~dY------------~------~~ 793 (1073)
T 3gjx_A 750 ----MRTVKRETLKLISGWVSR-----------SND---PQMVAENFVPPLLDAVLIDY------------Q------RN 793 (1073)
T ss_dssp ----HHHHHHHHHHHHHHHHTT-----------CSC---HHHHHHHTSHHHHHHTHHHH------------H------HS
T ss_pred ----HHHHHHHHHHHHHHHHhc-----------CCC---HHHHHHHhHHHHHHHHHHHH------------h------cC
Confidence 012344444444433321 111 12223334444444332210 0 01
Q ss_pred ChhhH-HHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHH----cc---CCChhHHhhHhHHHHHHHhhcCCCc----HHHH
Q 002400 706 TAEER-RIAICIFDDVMEHCREAALKYYDTYLPFLLEA----CN---DKHPDVRQAAVYGIGVCAEFGGSVF----KPLV 773 (927)
Q Consensus 706 ~~~~r-~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~----l~---d~~~~vr~~a~~~lg~l~~~~~~~~----~~~~ 773 (927)
.+..| ...+.++..++..+|..+.+.++.++..+..+ ++ .+.|+.|.+-...+..+..++...+ .+.+
T Consensus 794 ~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~ 873 (1073)
T 3gjx_A 794 VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQF 873 (1073)
T ss_dssp CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHH
Confidence 23334 34678888889999998888888888877654 33 4789999999999999998876433 2345
Q ss_pred HHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCC--C-------CHhhHHHHHHhcCCCC---CcHHHHHHH
Q 002400 774 GEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDS--I-------DAAQVVPAWLSCLPLK---GDLIEAKVV 841 (927)
Q Consensus 774 ~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~--~-------~~~~~l~~~l~~Lp~~---~d~~e~~~~ 841 (927)
..++..+.-.+..+ .+.+.+.+...+..++.+.... . ..-.++..++..+... ..+..-...
T Consensus 874 ~~~i~~i~wa~kh~------~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~i 947 (1073)
T 3gjx_A 874 KLVLDSIIWAFKHT------MRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASI 947 (1073)
T ss_dssp HHHHHHHHHHHTCS------SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCC------ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHH
Confidence 66666666666544 3557777777777777653321 1 1122333334444322 233444556
Q ss_pred HHHHHHHHhc
Q 002400 842 HAQLCSMVER 851 (927)
Q Consensus 842 ~~~l~~l~~~ 851 (927)
+.-++.++..
T Consensus 948 l~~l~~~~~~ 957 (1073)
T 3gjx_A 948 LAYMFNLVEE 957 (1073)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHc
Confidence 6777777754
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.44 E-value=4.3e-11 Score=122.00 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=177.3
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK 222 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 222 (927)
-++.+++.+.++++.+|..++.+|..++...++...... ...++.+.+.+.+++..+|..|+.++..+. .. ++...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~--~~~~~ 79 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SG--PDEAI 79 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TS--CHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cC--ChHHH
Confidence 578899999999999999999999999877653322222 357889999999999999999999999998 32 11111
Q ss_pred HhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHH
Q 002400 223 ERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHA 301 (927)
Q Consensus 223 ~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~a 301 (927)
..+. -...++.+..++.+++++++..++..+..++...+........ ..++.++ +++.++++..|..
T Consensus 80 ~~~~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----------~~l~~~~~~~~~~ 147 (252)
T 4hxt_A 80 KAIV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV----------KLLTSTDSEVQKE 147 (252)
T ss_dssp HHHH--HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH----------HHTTCSCHHHHHH
T ss_pred HHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH----------HHHcCCCHHHHHH
Confidence 1111 1123444455556788999999999999998654443332222 3555555 5566788999999
Q ss_pred HHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc
Q 002400 302 VLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP 380 (927)
Q Consensus 302 al~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~ 380 (927)
++.+|+.++.+.+....... ...++.+...+.++++.+|..|+++++.++.........-.-..+++.+++.+.+ +++
T Consensus 148 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~ 226 (252)
T 4hxt_A 148 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS-TDS 226 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC-SCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC-CcH
Confidence 99999999987654322222 3578889999999999999999999999987432222122345689999999998 899
Q ss_pred hHHHHHHHHHHHhHhcCCCc
Q 002400 381 RVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~~~ 400 (927)
.+|..|+++|.++....+..
T Consensus 227 ~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999876543
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.42 E-value=1.6e-11 Score=125.22 Aligned_cols=246 Identities=18% Similarity=0.177 Sum_probs=176.4
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 185 LHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 185 l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
.++.+.+.+.++++++|..|+.++..+. ..- +.....+.. ...++.+..++.++++++...++..+..++...+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~-~~~--~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIA-SGP--ASAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSC--HHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCC--cHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 3677888888889999999999999998 422 111111111 12444555556678889999999999999876443
Q ss_pred HHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHH
Q 002400 265 FLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWA 342 (927)
Q Consensus 265 ~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~ 342 (927)
.-..... ..++.++ .+++++++..|..|+.+|+.++...++....... ..++.++..+.++++.+|..
T Consensus 78 ~~~~~~~~~~i~~l~----------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~ 147 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLV----------KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 147 (252)
T ss_dssp HHHHHHHTTHHHHHH----------HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHCCCHHHHH----------HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 3322222 3555555 5556778999999999999999765543222222 47888999999999999999
Q ss_pred HHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCc-hHHHHHHHHHHhcCCC
Q 002400 343 AINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPY-LDGIVSKLLVLLQNGK 421 (927)
Q Consensus 343 a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-l~~l~~~L~~~l~~~~ 421 (927)
++++++.++.........-.-..++|.++..+.+ +++.++..|+++|.+++...+ +..... -..+++.|..++++.+
T Consensus 148 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 148 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCc
Confidence 9999999987533222223346799999999998 899999999999999986432 111111 1346788999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 422 QMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 422 ~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
+.+|+.++.+++.+....+....+|+
T Consensus 226 ~~v~~~a~~~L~~l~~~~~~~~~~~~ 251 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGGWLEHHHHH 251 (252)
T ss_dssp HHHHHHHHHHHHHHHHTCBCCC----
T ss_pred HHHHHHHHHHHHHHHcCCCccccccC
Confidence 99999999999999987776655543
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.41 E-value=2.9e-11 Score=123.26 Aligned_cols=241 Identities=19% Similarity=0.168 Sum_probs=173.9
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP 217 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 217 (927)
+.-+.-++.+...++++++.++..++.+|..+.....+...... ...++.+.+.+.++++.+|..|+.+|..+. ..
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~-- 84 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SG-- 84 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TS--
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cC--
Confidence 33455688899999999999999999999766654333222222 357899999999999999999999999998 32
Q ss_pred CchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHhhccCchhhhhCCcch
Q 002400 218 SLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQL-VDVVGSMLQVAEAEAVFPGFLAAPEW 296 (927)
Q Consensus 218 ~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l-~~ll~~ll~~~~~~~~i~~~l~~~~~ 296 (927)
++.....+.. ...++.+..++.++++.++..++..+..++...+....... ...++.++ ++++++++
T Consensus 85 ~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----------~lL~~~~~ 152 (252)
T 4db8_A 85 GNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----------QLLSSPNE 152 (252)
T ss_dssp CHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH----------HGGGCSCH
T ss_pred CHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHH----------HHHhCCCH
Confidence 1111111111 12344555556678889999999999999877544322222 24666665 55667789
Q ss_pred hHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhcc
Q 002400 297 QKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMD 375 (927)
Q Consensus 297 ~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~ 375 (927)
.+|..|+.+|+.++.+.++...... ..+++.++..+.++++.+|..|+++|+.++..-......-.-..+++.++..+.
T Consensus 153 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 153 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence 9999999999999987655332222 356788999999999999999999999998543222211233468999999999
Q ss_pred CCCCchHHHHHHHHHHHhHh
Q 002400 376 DFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 376 ~~~~~~v~~~a~~al~~l~~ 395 (927)
+ +++.+|..|+++|.+++.
T Consensus 233 ~-~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 233 H-ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp C-SSSHHHHTHHHHHHTTC-
T ss_pred C-CCHHHHHHHHHHHHHHhc
Confidence 9 899999999999998763
No 60
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.38 E-value=3.5e-11 Score=124.67 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=182.4
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHH
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKE 223 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 223 (927)
-++.++..+.++++.+|..++.+|+.+.. +..++.+...+.++++.+|..|+.+|+.+. .. .
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~-~~---~---- 85 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK-IC---K---- 85 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC-CC---T----
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cc---c----
Confidence 47788888999999999999999998763 346777888889999999999999988765 21 1
Q ss_pred hHHhhHHHHHHHHHH-HHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHH
Q 002400 224 RFLDLLPLMMRTLTE-ALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV 302 (927)
Q Consensus 224 ~~~~~~p~ll~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa 302 (927)
..++.+++.+.+ ++.++++.++..++..+..+....+.. .+.+++.+. ..+++++|.+|.++
T Consensus 86 ---~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~----------~~l~d~~~~vR~~a 148 (280)
T 1oyz_A 86 ---KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQ----------ITAFDKSTNVRRAT 148 (280)
T ss_dssp ---TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHH----------HHTTCSCHHHHHHH
T ss_pred ---ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHH----------HHhhCCCHHHHHHH
Confidence 123344555543 346778889999999988876543322 234455444 55678899999999
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchH
Q 002400 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRV 382 (927)
Q Consensus 303 l~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v 382 (927)
+.+|+.+.. +..++.+...+.|+++.||..|+++++.+... -+.+++.++..+.| +++.|
T Consensus 149 ~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d-~~~~v 208 (280)
T 1oyz_A 149 AFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQD-KNEEV 208 (280)
T ss_dssp HHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTC-SCHHH
T ss_pred HHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcC-CCHHH
Confidence 999997654 23567777888999999999999999987421 13567888899999 89999
Q ss_pred HHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhccc
Q 002400 383 QAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNAN 462 (927)
Q Consensus 383 ~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~ 462 (927)
|..|+.+|+.+. . +..++.|...+++++ +|..++.+++.+.. +..+|.|...+....
T Consensus 209 R~~A~~aL~~~~---~--------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 209 RIEAIIGLSYRK---D--------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHHHHHTT---C--------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhC---C--------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCC
Confidence 999999999875 1 123455566666643 88888888887743 256778888876533
Q ss_pred CcchhhHHHHHHHHH
Q 002400 463 DKSNRMLRAKSMECI 477 (927)
Q Consensus 463 ~~~~~~lr~~a~~~l 477 (927)
+ ..++..+++.+
T Consensus 266 ~---~~~~~~~~~~l 277 (280)
T 1oyz_A 266 D---NEIITSAIDKL 277 (280)
T ss_dssp C---CHHHHHHHHHH
T ss_pred C---cHHHHHHHHHh
Confidence 2 34555555544
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.34 E-value=1.1e-10 Score=120.97 Aligned_cols=250 Identities=12% Similarity=0.123 Sum_probs=181.8
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTL 185 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l 185 (927)
..|+..|.++ ++.+|..++.+++.+. -++.++.+..++.++++.+|..++.+|+.+.... ...+.+
T Consensus 26 ~~L~~~L~~~-~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 26 DELFRLLDDH-NSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp HHHHHHTTCS-SHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 5677778765 8999999999998774 2578999999999999999999999999876321 123456
Q ss_pred HHHHHh-hhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH
Q 002400 186 HEVFSK-FLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPR 264 (927)
Q Consensus 186 ~~~l~~-~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (927)
++.+.. .++++++.||..|+.+|+.+. ... ....+..++.+...+.++++.++..++..+..+...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~-~~~---------~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--- 158 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRC-KKN---------PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--- 158 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHH-HHC---------GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh-ccC---------CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---
Confidence 677663 567889999999999999987 321 112344555666667788899998888887765431
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHH
Q 002400 265 FLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAI 344 (927)
Q Consensus 265 ~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 344 (927)
..++.+. +.++++++.+|..++.+|+.+.... +..++.+...++|+++.||..|+
T Consensus 159 -------~~~~~L~----------~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 159 -------ATIPLLI----------NLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp -------CCHHHHH----------HHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -------HHHHHHH----------HHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHH
Confidence 2334343 4556789999999999999885322 35677888889999999999999
Q ss_pred HHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcC-CChh
Q 002400 345 NAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQN-GKQM 423 (927)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~-~~~~ 423 (927)
++|+.+.. ...++.++..+.+ ++ ||..+..+|+.+... ..++.|...+++ .+..
T Consensus 214 ~aL~~~~~-----------~~~~~~L~~~l~d-~~--vr~~a~~aL~~i~~~-----------~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 214 IGLSYRKD-----------KRVLSVLCDELKK-NT--VYDDIIEAAGELGDK-----------TLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp HHHHHTTC-----------GGGHHHHHHHHTS-SS--CCHHHHHHHHHHCCG-----------GGHHHHHHHHTTSSCCH
T ss_pred HHHHHhCC-----------HhhHHHHHHHhcC-cc--HHHHHHHHHHhcCch-----------hhhHHHHHHHhcCCCcH
Confidence 99998762 2567888888887 43 889999999887431 234555566654 3455
Q ss_pred HHHHHHHHH
Q 002400 424 VQEGALTAL 432 (927)
Q Consensus 424 v~~~a~~al 432 (927)
++..++.++
T Consensus 269 ~~~~~~~~l 277 (280)
T 1oyz_A 269 IITSAIDKL 277 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555554
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.32 E-value=2.3e-11 Score=123.98 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=168.8
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHH
Q 002400 186 HEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRF 265 (927)
Q Consensus 186 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 265 (927)
++.+...+.++++++|..|+.++..++ .. +......+. -...++.+..++.++++++...++..+..++...+..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l-~~--~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQIL-SD--GNEQIQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHH-HH--HHHHHHHHH--HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH-cC--CCchHHHHH--HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 455667778888999999999998877 32 111111111 1123445555566778889999999999998755443
Q ss_pred HHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHH
Q 002400 266 LRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAA 343 (927)
Q Consensus 266 ~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a 343 (927)
-..... ..++.++ ++++++++..|+.|+.+|+.++.+.......... ..++.++..+.++++.+|..|
T Consensus 89 ~~~i~~~g~i~~L~----------~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 158 (252)
T 4db8_A 89 IQAVIDAGALPALV----------QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (252)
T ss_dssp HHHHHHTTHHHHHH----------HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHcCCHHHHH----------HHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 332222 3566555 5666788999999999999999876653222222 478999999999999999999
Q ss_pred HHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchH-HHHHHHHHHhcCCCh
Q 002400 344 INAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLD-GIVSKLLVLLQNGKQ 422 (927)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~-~l~~~L~~~l~~~~~ 422 (927)
+++|+.++.........-.-..++|.++..+.+ +++.++..|+++|.+++...+ +....... ..++.|..++.+.++
T Consensus 159 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCSSS
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCCCH
Confidence 999999997543222122336789999999999 899999999999999985432 11112222 477888999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 002400 423 MVQEGALTALASVAD 437 (927)
Q Consensus 423 ~v~~~a~~al~~l~~ 437 (927)
.+|+.|+.+|+.++.
T Consensus 237 ~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 237 KIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988753
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.24 E-value=1.4e-09 Score=120.69 Aligned_cols=353 Identities=15% Similarity=0.141 Sum_probs=228.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhcc
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASV 135 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~ 135 (927)
++.|+..+. +.++.++..|+..|++.....+ ..+..+ .....-..|++.|.++ ++.++..++.++..|+...
T Consensus 4 l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~---~~~~~i---~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDE---SAKQQV---YQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCS---SHHHHH---HHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCh---HHHHHH---HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC
Confidence 456677775 4577889999999998764331 011111 1223446788888864 8899999999999998741
Q ss_pred CCCC---CccchHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHHH-hHHHHHHHHHhhh--------CC-------
Q 002400 136 LPDG---DWPELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLIA-HGDTLHEVFSKFL--------GS------- 195 (927)
Q Consensus 136 ~~~~---~w~~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~~-~~~~l~~~l~~~l--------~~------- 195 (927)
.+.. .-...+|.|++++. ++++.+++.+..+|..++.. ++ ... .....+|.+.+.+ .+
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 1100 01356899999998 88999999999999999876 21 111 1226777777777 22
Q ss_pred -CCHHHHHHHHHHHHHHHHhhCCCchhHHhHH---hhHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHccC----c-H
Q 002400 196 -NNFDLRIAALEATVNFIMNCLPSLGEKERFL---DLLPLMMRTLTEALNK--GNESSAQEALELLIELAATE----P-R 264 (927)
Q Consensus 196 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~---~~~p~ll~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~----~-~ 264 (927)
.+..+...|+.+|.++. .. +..+..+. ..+|.++..+...... .+......++..+..++... + .
T Consensus 154 ~~~~~v~~~a~~aL~nLs-~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLS-SA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp CCCHHHHHHHHHHHHHHT-TS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred cccHHHHHHHHHHHHHHc-cC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 24567779999999998 43 22333333 5677777777654332 23444555555555553110 0 0
Q ss_pred H--HHH-------------H-------------------------------HHHHHHHHHHHhhccCchhhhhC-Ccchh
Q 002400 265 F--LRK-------------Q-------------------------------LVDVVGSMLQVAEAEAVFPGFLA-APEWQ 297 (927)
Q Consensus 265 ~--~~~-------------~-------------------------------l~~ll~~ll~~~~~~~~i~~~l~-~~~~~ 297 (927)
. +.+ + -...++.++ .++. +.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~----------~lL~~~~~~~ 299 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYL----------NLMGKSKKDA 299 (457)
T ss_dssp HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHH----------HHHHHCCCHH
T ss_pred hhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHH----------HHHhhcCCHH
Confidence 0 000 0 011122222 2222 35678
Q ss_pred HHHHHHHHHHHHhhhchH---HH-HhhH--HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHH
Q 002400 298 KHHAVLIALAQIAEGCSK---VM-IKNL--DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALV 371 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~~---~~-~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll 371 (927)
.+++|+++|+.++.+... .+ ...+ ...+|.+++.|.+++..|+..|+|+|+.++.. +......-...+|.|+
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHH
Confidence 999999999999876432 12 1122 24578999999999999999999999999874 3343344567899999
Q ss_pred HhccCCCCc------hHHHHHHHHHHHhHhcCCCccccC-chHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHH
Q 002400 372 GAMDDFQNP------RVQAHAASAVLNFSENCTPDILTP-YLDGIVSKLLVLLQNG-KQMVQEGALTALASVA 436 (927)
Q Consensus 372 ~~l~~~~~~------~v~~~a~~al~~l~~~~~~~~~~~-~l~~l~~~L~~~l~~~-~~~v~~~a~~al~~l~ 436 (927)
+.|.. .++ .+...++.+|.+++...+.. ... .-...++.|..++.+. +..+++.|...|..+.
T Consensus 378 ~lL~~-~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 378 RLLTS-HTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HTTTS-CCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HhccC-CCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 99987 433 57788999999998654321 111 1236788888888888 8899999988887654
No 64
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.24 E-value=1.8e-08 Score=112.04 Aligned_cols=354 Identities=13% Similarity=0.062 Sum_probs=233.5
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChh--------HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccc
Q 002400 18 NPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPD--------AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDST 89 (927)
Q Consensus 18 ~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~--------~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~ 89 (927)
....+..+++.+.++|.+.+..|-..|..+...+++ +-++.|+.+|. +.++.++..|+-.|+|.....
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~--- 121 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGR--- 121 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSS---
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccC---
Confidence 345688888888999999998888888776543332 24677888876 678999999999999987531
Q ss_pred cccccccCHhHHHHH-----HHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC-CccchHHHHHHHh-----------
Q 002400 90 SFIFTRLAPSTQANL-----KSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG-DWPELIPFIFQCL----------- 152 (927)
Q Consensus 90 ~~~w~~l~~~~~~~i-----k~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~-~w~~ll~~l~~~l----------- 152 (927)
+++.|..| ...|++.|.+..+..++..++.++..++.....+. .-.+.+|.|++++
T Consensus 122 -------~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 122 -------DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp -------CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred -------CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 13344444 46688888875577889999999999987532211 1123567777655
Q ss_pred -------cCCChHHHHHHHHHHHHhhhhhHH---HHHH---hHHHHHHHHHhhhC--CCCHHHHHHHHHHHHHHHHhhC-
Q 002400 153 -------VTFNDKIQESALLILSRMSQFVSE---VLIA---HGDTLHEVFSKFLG--SNNFDLRIAALEATVNFIMNCL- 216 (927)
Q Consensus 153 -------~s~~~~~r~~al~~l~~l~~~~~~---~l~~---~~~~l~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~- 216 (927)
.+.+..+++.+..+|..++...++ .+.. -++.++.++...+. +.+......|+.+|.++. ...
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs-~~~~ 273 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS-YQVH 273 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH-TTHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh-cccc
Confidence 123568999999999999865432 2221 13345555544432 245677788888888876 321
Q ss_pred ---CCch----------------hHHhHHhh-HHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHccCc---HHHHHHH--
Q 002400 217 ---PSLG----------------EKERFLDL-LPLMMRTLTEALN-KGNESSAQEALELLIELAATEP---RFLRKQL-- 270 (927)
Q Consensus 217 ---~~~~----------------~~~~~~~~-~p~ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~---~~~~~~l-- 270 (927)
+... ....+..+ -|..++.+..++. +.++.+...|...+..++.... ..++..+
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 1000 00001111 1334444455553 4578888899999999986542 2222222
Q ss_pred HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCC--------CHHHHHH
Q 002400 271 VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDP--------HPRVRWA 342 (927)
Q Consensus 271 ~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~--------~~~vr~~ 342 (927)
...+|.+. +++.+++..++++|+.+|+.++.+..... ..-...+|.++..|.+. +..++..
T Consensus 354 ~~glp~Lv----------~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~ 422 (584)
T 3l6x_A 354 EKALSAIA----------DLLTNEHERVVKAASGALRNLAVDARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422 (584)
T ss_dssp HHHHHHHH----------HGGGCSCHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred cCcHHHHH----------HHHcCCCHHHHHHHHHHHHHHhCChhHHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence 24455555 66677888999999999999998754211 11246788899888765 4678899
Q ss_pred HHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC--CchHHHHHHHHHHHhHh
Q 002400 343 AINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ--NPRVQAHAASAVLNFSE 395 (927)
Q Consensus 343 a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~--~~~v~~~a~~al~~l~~ 395 (927)
|+++|+.++..-......-.-...+|.|+..+.+ . .+.+++.|+++|.++..
T Consensus 423 a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s-~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 423 ILNTINEVIAENLEAAKKLRETQGIEKLVLINKS-GNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTC-SSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCCChHHHHHHHHHHHHHHc
Confidence 9999998875432222223445789999999987 4 78999999999999974
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.22 E-value=8.8e-09 Score=120.33 Aligned_cols=306 Identities=13% Similarity=0.207 Sum_probs=224.5
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCC--CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH--HHHHh
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPD--GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE--VLIAH 181 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~--~l~~~ 181 (927)
..+++.+.... ..-++.++..++.+....... -.| .++..+...+.+.... ++|+.++..+++..+. .++++
T Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 17 EELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHHHhhccccc-hhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc
Confidence 33666666532 344556666677665543221 244 6777887777665444 9999999999977643 56777
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc
Q 002400 182 GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT 261 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (927)
+-.++|.++....|....||.+|-.+...++ ..++. .....++|.++..+.
T Consensus 93 ~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~-~~~~~----~a~~~~~~~~~~~~~------------------------ 143 (986)
T 2iw3_A 93 IVQLVPAICTNAGNKDKEIQSVASETLISIV-NAVNP----VAIKALLPHLTNAIV------------------------ 143 (986)
T ss_dssp HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHSCG----GGHHHHHHHHHHHHH------------------------
T ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HhCCH----HHHHHHHHHHHHHhc------------------------
Confidence 7788999999999999999999999999988 66531 112223333222221
Q ss_pred CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHH
Q 002400 262 EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRW 341 (927)
Q Consensus 262 ~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~ 341 (927)
....|+.+.+|+.+++.+++..++.+...+++++|.+..++.|..+.|..
T Consensus 144 ------------------------------~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~ 193 (986)
T 2iw3_A 144 ------------------------------ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193 (986)
T ss_dssp ------------------------------HCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ------------------------------cccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH
Confidence 13469999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC
Q 002400 342 AAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK 421 (927)
Q Consensus 342 ~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~ 421 (927)
+|..++..++..++. .-+...+|.|++++.+ ++ .|.+ +...|..-. +-.+.-.|-+.-+++.|.+.|+..+
T Consensus 194 ~~~~~~~~~~~~~~n----~d~~~~~~~~~~~~~~-p~-~~~~-~~~~l~~~t--fv~~v~~~~l~~~~p~l~r~l~~~~ 264 (986)
T 2iw3_A 194 AATAAMTKATETVDN----KDIERFIPSLIQCIAD-PT-EVPE-TVHLLGATT--FVAEVTPATLSIMVPLLSRGLNERE 264 (986)
T ss_dssp HHHHHHHHHGGGCCC----TTTGGGHHHHHHHHHC-TT-HHHH-HHHHHTTCC--CCSCCCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhcCCC----cchhhhHHHHHHHhcC-hh-hhHH-HHHHhhcCe--eEeeecchhHHHHHHHHHhhhccCc
Confidence 999999999987753 3456889999999998 53 3432 233332211 1112235778889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhh--hhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400 422 QMVQEGALTALASVADSSQG--QFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA 483 (927)
Q Consensus 422 ~~v~~~a~~al~~l~~~~~~--~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 483 (927)
..++..+.-.+.++++.+.+ +..||++.++|.+.+......+++.+.+-.+|+.++...+..
T Consensus 265 ~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 265 TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred chhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999988865 567999999999999887777766666666666666555543
No 66
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.21 E-value=1.1e-08 Score=111.35 Aligned_cols=357 Identities=11% Similarity=0.047 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhH--------HHHHHHHHHhcC-----------CChhHHHHHHHH
Q 002400 18 NPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDA--------FALNLSRMLSSS-----------SLPECRAMSAIL 78 (927)
Q Consensus 18 ~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~--------~~~~L~~il~~~-----------~~~~~R~~a~v~ 78 (927)
..+.+..++..+.+.|.+. .-..|..+.. +|+. .++.|++++..+ .+++.|..|+-.
T Consensus 30 ~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a 105 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKDD---MSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105 (458)
T ss_dssp ---------------CCHH---HHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHH---HHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence 3456667777776666662 3344555555 3432 457888888863 337999999999
Q ss_pred HHhhcccCccccccccccCHhHHH--------HHH---HHHHHHHhhcc-hh-----hHHH-------HHHHHHHHHHhc
Q 002400 79 LRKHLTRDDSTSFIFTRLAPSTQA--------NLK---SVLLVQLQNET-NK-----SIIK-------KICDAVSELAAS 134 (927)
Q Consensus 79 Lk~~i~~~~~~~~~w~~l~~~~~~--------~ik---~~Ll~~l~~~~-~~-----~vr~-------~~~~~i~~ia~~ 134 (927)
|.|.+...+. .....++ .++ ..+++.+.+.. +. .++. ++..++.+|+..
T Consensus 106 l~ni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 106 LHNIIHSQPD-------DKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHSCS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHccCcc-------hhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 9999987521 1111111 111 11333333220 00 1332 455555555432
Q ss_pred cCCCC--CccchHHHHHHHhcC-----------CChHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHHHhhhCCCCHH
Q 002400 135 VLPDG--DWPELIPFIFQCLVT-----------FNDKIQESALLILSRMSQFVSEV--LIAHGDTLHEVFSKFLGSNNFD 199 (927)
Q Consensus 135 ~~~~~--~w~~ll~~l~~~l~s-----------~~~~~r~~al~~l~~l~~~~~~~--l~~~~~~l~~~l~~~l~~~~~~ 199 (927)
.--+. .-...++.|+.++.. .++.+++.|..+|..++..-... ........+|.|.+.|.+++++
T Consensus 179 ~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~ 258 (458)
T 3nmz_A 179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHH
Confidence 10000 113467777777631 34567899999999998654321 1111356789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCchhHHhHH--hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHH--HHHHHH
Q 002400 200 LRIAALEATVNFIMNCLPSLGEKERFL--DLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQ--LVDVVG 275 (927)
Q Consensus 200 vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--l~~ll~ 275 (927)
++..|+.+|.++. .. .+...+..+. ..+|.+++.+. .++++.+...++..+..++......-... ....+|
T Consensus 259 v~~~A~~aL~nLs-~~-~~~~~k~~I~~~GaI~~LV~lLl---~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 259 LQQVIASVLRNLS-WR-ADVNSKKTLREVGSVKALMECAL---EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp HHHHHHHHHHHHT-SS-CCHHHHHHHHHTTHHHHHHHHHT---TCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHh-cC-CCHHHHHHHHHcCCHHHHHHHHh---cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 9999999999987 32 1112222222 34666655542 34577788888888888886322111111 124566
Q ss_pred HHHHHhhccCchhhhhCCcc-hhHHHHHHHHHHHHhh---hchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 276 SMLQVAEAEAVFPGFLAAPE-WQKHHAVLIALAQIAE---GCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 276 ~ll~~~~~~~~i~~~l~~~~-~~~r~aal~al~~i~~---~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
.+.+++... .+.. +..++.|..+|..++. +.++....... ..++.++..|.+.+..++..|+++|+.+
T Consensus 334 ~Lv~LL~~~-------~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 334 FLVGTLTYR-------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HHHHHTTCC-------CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-------CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 555333221 0112 2578889999998886 45443222221 4678899999999999999999999999
Q ss_pred HhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 351 STDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 351 ~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
+..-......-.-...+|.|+..+.+ +++.++..|+++|.+++...+
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTCCS
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCH
Confidence 85322222112334689999999998 899999999999999998754
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.21 E-value=3.9e-09 Score=117.00 Aligned_cols=356 Identities=12% Similarity=0.037 Sum_probs=222.8
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCc-----cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHH
Q 002400 106 SVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDW-----PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIA 180 (927)
Q Consensus 106 ~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~ 180 (927)
..++..|.++ ++.++..++.++..++.... ..+ ...+|.|++++.++++.++..|..+|..++...++.-..
T Consensus 5 ~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~--~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 5 PKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDE--SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHSS-CTHHHHHHHHHHHHHTSSCS--SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHHcCCh--HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4577788876 88899999999999885432 222 467899999999999999999999999998642221111
Q ss_pred h-HHHHHHHHHhhhC-CCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHH--------HHh----cCChh
Q 002400 181 H-GDTLHEVFSKFLG-SNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTE--------ALN----KGNES 246 (927)
Q Consensus 181 ~-~~~l~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~--------~l~----~~~~~ 246 (927)
. -...+|.|.+.|. +++++++..|+.+|.++. .. +. .........+|.+++.+.. -.. ..+.+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa-~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS-ST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHh-cC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 1 1245788888888 778999999999999999 54 22 2222333566776666621 000 02456
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHH--HHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH---------
Q 002400 247 SAQEALELLIELAATEPRFLRKQL--VDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK--------- 315 (927)
Q Consensus 247 ~~~~a~~~l~~l~~~~~~~~~~~l--~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~--------- 315 (927)
+...+...+..++.. +....... +..++.++.++.+. ..-.+.+-+.++.++.+|..++.....
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC----VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH----HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh----ccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 677899999999876 43322222 14566665433210 000112334555555555555411100
Q ss_pred -----------------------------------------HHHh-hHHHHHHHHHhccCC-CCHHHHHHHHHHHHHhHh
Q 002400 316 -----------------------------------------VMIK-NLDQVVSMVLNSFQD-PHPRVRWAAINAIGQLST 352 (927)
Q Consensus 316 -----------------------------------------~~~~-~l~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~ 352 (927)
.... .-...++.++..|.+ .++.++.+|+|+|+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 0000 012345556666643 468999999999999986
Q ss_pred hhch---hHHHHhH--hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCCh-----
Q 002400 353 DLGP---ELQTQFH--HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQ----- 422 (927)
Q Consensus 353 ~~~~---~~~~~~~--~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~----- 422 (927)
.-.+ .+....+ ...+|.|++.+.+ ++..++..|+++|.+++... +.-...-...++.|+.+|...++
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCc
Confidence 4322 1101122 4789999999999 89999999999999998742 21111234677888888887643
Q ss_pred -hHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHH
Q 002400 423 -MVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISL 479 (927)
Q Consensus 423 -~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~ 479 (927)
.+...++.+++.+.....+ ....+ ...++.|..++... ....++..|...+..
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~---~~~~i~~~A~~~L~~ 446 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSS---ASPKAAEAARLLLSD 446 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCC---CcHHHHHHHHHHHHH
Confidence 5777888888888754433 22222 25678888877652 133466655555543
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.19 E-value=7.9e-09 Score=114.96 Aligned_cols=349 Identities=15% Similarity=0.151 Sum_probs=231.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHH-----HHHHHHHHhhcchhhHHHHHHHHHHH
Q 002400 56 ALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANL-----KSVLLVQLQNETNKSIIKKICDAVSE 130 (927)
Q Consensus 56 ~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~i-----k~~Ll~~l~~~~~~~vr~~~~~~i~~ 130 (927)
++.|+..|. +.++.++..|+..|++..... .+.+..| ...|++.|.+. +..++..++.++..
T Consensus 50 i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~-----------~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~n 116 (584)
T 3l6x_A 50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRN-----------DKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKN 116 (584)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 688888886 567889999999998877543 2223333 36688888875 89999999999999
Q ss_pred HHhccCCCCC----ccchHHHHHHHhcC-CChHHHHHHHHHHHHhhhhhH--HHHHHhHHHHHHHHHhhh----------
Q 002400 131 LAASVLPDGD----WPELIPFIFQCLVT-FNDKIQESALLILSRMSQFVS--EVLIAHGDTLHEVFSKFL---------- 193 (927)
Q Consensus 131 ia~~~~~~~~----w~~ll~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~--~~l~~~~~~l~~~l~~~l---------- 193 (927)
|+...-+... -...+|.|+.++.+ .+..+++.+..+|..++..-. ..+. ..-++.|.+.+
T Consensus 117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~---~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 117 ISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV---DHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH---HHTHHHHHHHTHHHHHCCC--
T ss_pred HHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH---hccHHHHHHHHhccccccccc
Confidence 9864211111 13578899999886 577889999988888875321 1221 12234444332
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH---HhhHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHc
Q 002400 194 --------GSNNFDLRIAALEATVNFIMNCLPSLGEKERF---LDLLPLMMRTLTEALNK--GNESSAQEALELLIELAA 260 (927)
Q Consensus 194 --------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~~~~p~ll~~l~~~l~~--~~~~~~~~a~~~l~~l~~ 260 (927)
..++..|+..|..+|.++. .. ++..+..+ ..+++.++..+...+.. .+......|+-.+..++.
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs-~~--~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVS-SE--RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHT-SS--CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred ccccccccccccHHHHHHHHHHHHHHh-cC--CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 1236799999999999998 32 22213332 24567777777765432 344566677777777663
Q ss_pred cC----c---HHHHH-------------------HHHHHHHHHHHHhhccCchhhhhC-CcchhHHHHHHHHHHHHhhhc
Q 002400 261 TE----P---RFLRK-------------------QLVDVVGSMLQVAEAEAVFPGFLA-APEWQKHHAVLIALAQIAEGC 313 (927)
Q Consensus 261 ~~----~---~~~~~-------------------~l~~ll~~ll~~~~~~~~i~~~l~-~~~~~~r~aal~al~~i~~~~ 313 (927)
.. + .+... .-+..++.++ .++. +.++..+++|..+|..++.+.
T Consensus 271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll----------~LL~~s~~~~v~E~Aa~AL~nL~ag~ 340 (584)
T 3l6x_A 271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI----------SLLKESKTPAILEASAGAIQNLCAGR 340 (584)
T ss_dssp THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH----------HHHHHCCCHHHHHHHHHHHHHHHSSC
T ss_pred cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH----------HHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 21 1 01100 0012233333 2232 457899999999999998764
Q ss_pred hH---HHHhhH--HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC--------Cc
Q 002400 314 SK---VMIKNL--DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ--------NP 380 (927)
Q Consensus 314 ~~---~~~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~--------~~ 380 (927)
.. .+...+ ...+|.|+..|.+++..|+..|+++|+.++..-. .....-...+|.|+..|.+ . +.
T Consensus 341 ~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~-~~~~~~~~~s~ 417 (584)
T 3l6x_A 341 WTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPG-GQQNSSWNFSE 417 (584)
T ss_dssp SHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSS-SSCSGGGTCCH
T ss_pred ccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcC-CcccccccchH
Confidence 22 122222 3568999999999999999999999999997543 2234456799999999987 4 34
Q ss_pred hHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHH
Q 002400 381 RVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNG--KQMVQEGALTALASVAD 437 (927)
Q Consensus 381 ~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~--~~~v~~~a~~al~~l~~ 437 (927)
.++..||++|.+++...... ..... ...++.|..++.+. ...+++.|..++..+..
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 67889999999998553311 11111 25678888888875 78899999999998874
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.16 E-value=4.2e-10 Score=110.88 Aligned_cols=188 Identities=20% Similarity=0.277 Sum_probs=141.4
Q ss_pred hhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhH
Q 002400 288 PGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRL 366 (927)
Q Consensus 288 ~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~i 366 (927)
..+++++++..|..|+.+|+.++.+..+....... ..++.++..|.++++.+|..|+++|+.++.........-.-...
T Consensus 18 ~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 36677889999999999999999776653332222 57889999999999999999999999998643222212234568
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCc-hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 002400 367 LPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK 445 (927)
Q Consensus 367 l~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 445 (927)
+|.++..+.+ +++.++..|+++|.+++..... ..... -...++.|+.++++.+..++..++.+|+.++....+....
T Consensus 98 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 175 (210)
T 4db6_A 98 LPALVQLLSS-PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 175 (210)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999 8999999999999999865431 11111 1357888999999999999999999999998754433222
Q ss_pred hH-HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHH
Q 002400 446 YY-DAVMPYLKAILVNANDKSNRMLRAKSMECISLVG 481 (927)
Q Consensus 446 ~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~ 481 (927)
.. ...++.|...+.. .+..+|..|..+++.++
T Consensus 176 ~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 176 VKEAGALEKLEQLQSH----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHh
Confidence 22 3577888887754 45678888888888765
No 70
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.16 E-value=4.8e-08 Score=121.07 Aligned_cols=549 Identities=13% Similarity=0.061 Sum_probs=266.1
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh----HHHHH
Q 002400 104 LKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV----SEVLI 179 (927)
Q Consensus 104 ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~----~~~l~ 179 (927)
+.+.+-..+....++..|+++-..+..+-.. | +.|..+...|. -.+.+..+|..|+.+|...+... ++.-.
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p-~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k 87 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C-PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK 87 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C-TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 3333333333224667898888888877543 3 35654444443 24667889999999998877542 22222
Q ss_pred HhH-HHHHHHHHhhhC---CCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002400 180 AHG-DTLHEVFSKFLG---SNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELL 255 (927)
Q Consensus 180 ~~~-~~l~~~l~~~l~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l 255 (927)
..+ +.+++.+.+... +.+..||.....++..++...+++ -.|.+++.+.+.+.+ ++.....++.++
T Consensus 88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---------~Wp~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---------HWPDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---------TCTTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---------cchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 222 345555544321 146889999999999988333321 123333444444433 343444566666
Q ss_pred HHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC--
Q 002400 256 IELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ-- 333 (927)
Q Consensus 256 ~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~-- 333 (927)
..+++.- . .. .+... .|..-+. . .+...++.+++.+...+.
T Consensus 158 ~~L~Eev-----------~--------------~~-~~~~~-~r~~~l~--~--------~l~~~~~~I~~~~~~iL~~~ 200 (1204)
T 3a6p_A 158 LRLAEDV-----------V--------------TF-QTLPP-QRRRDIQ--Q--------TLTQNMERIFSFLLNTLQEN 200 (1204)
T ss_dssp HHHHHHH-----------H--------------TS-CCSCH-HHHHHHH--H--------HHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------c--------------cc-cchHH-HHHHHHH--H--------HHHHHHHHHHHHHHHHHHHH
Confidence 6555420 0 00 00001 1111100 0 011112222222222221
Q ss_pred -----------------CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhc
Q 002400 334 -----------------DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 334 -----------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~ 396 (927)
.+++.++..++.++..+..|.+..........+++.++..+.+ +.+|..|+.+|..++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 201 VNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSR 277 (1204)
T ss_dssp HHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTC
T ss_pred HHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhC
Confidence 1245678889999999888876543222212488888877665 78999999999999875
Q ss_pred CCC-ccccCch----HHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchh
Q 002400 397 CTP-DILTPYL----DGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNR 467 (927)
Q Consensus 397 ~~~-~~~~~~l----~~l~~~L~~~l~~~~----~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~ 467 (927)
... +...+++ ...+..++......+ ..-....+..++.+....+. .+...+..
T Consensus 278 ~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~-----------~l~~l~~~------- 339 (1204)
T 3a6p_A 278 KGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN-----------QLCALLGA------- 339 (1204)
T ss_dssp CSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHT-------
T ss_pred CCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH-----------HHHHHHhc-------
Confidence 421 1111111 111222222221000 00001111111111111110 01111110
Q ss_pred hHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhc----cccccchhhhHHH
Q 002400 468 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLG----QEFIPYMSVVMPP 543 (927)
Q Consensus 468 ~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~i~~~ 543 (927)
.......+....+++.++..... .+..+...++.+|..+.+... +.+.++++.+++.
T Consensus 340 ----------------~~~~~~~~~l~~~l~~lL~~t~~---~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 340 ----------------DSDVETPSNFGKYLESFLAFTTH---PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp ----------------CSSCCCCTTHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred ----------------cccccChhHHHHHHHHHHHHHhC---ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 00011223344455555543332 133455566667776665432 2356777888887
Q ss_pred H---HHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 002400 544 L---LQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPT 620 (927)
Q Consensus 544 l---l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 620 (927)
+ +..+.+.++......+...++.|+++|.+. ...+=|....+++..++...+....+|+...+..
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~------------~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~ 468 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNA------------FFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKY 468 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHH------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCcchhhhhcccCCcHHHHH------------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7 434433221100000000001111111100 0011134445566666655555544444443322
Q ss_pred -Hhhhhccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 002400 621 -LVPLLKFY--------------------FHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEA 679 (927)
Q Consensus 621 -l~~~l~~~--------------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~ 679 (927)
+...+... ..+....+....+..+++.+....+. .. .+ . .+.+.++..
T Consensus 469 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~---~~-l~---~----~~~~~Ll~~ 537 (1204)
T 3a6p_A 469 QLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR---EE-IP---V----NDGIELLQM 537 (1204)
T ss_dssp HHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT---TC-CC---H----HHHHHHHHH
T ss_pred HHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc---cc-cc---H----HHHHHHHHH
Confidence 22211110 11222333444444444433110000 00 00 0 123333333
Q ss_pred HccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccC------------CC
Q 002400 680 LHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACND------------KH 747 (927)
Q Consensus 680 l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d------------~~ 747 (927)
+.. .+..++..|..++.++|.+......+ ..+++.++..++..+.+ .+
T Consensus 538 ll~-------------------~~~~~p~l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 538 VLN-------------------FDTKDPLILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHH-------------------CCCSCHHHHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred HHh-------------------CCCCChHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 211 11245778899999999888876532 34788888888877765 23
Q ss_pred hhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCC
Q 002400 748 PDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHP 787 (927)
Q Consensus 748 ~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~ 787 (927)
.++|..|+.++..+++..++.+.||++.+...+..++...
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~ 637 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE 637 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Confidence 4799999999999999999999999999999999888644
No 71
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.16 E-value=8e-10 Score=108.82 Aligned_cols=190 Identities=19% Similarity=0.271 Sum_probs=142.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhc
Q 002400 235 TLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGC 313 (927)
Q Consensus 235 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~ 313 (927)
.+..++.+++++++..++..+..++...+........ ..++.++ ++++++++..|..|+.+|+.++.+.
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~----------~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV----------QLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH----------HHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH----------HHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4445556789999999999999998655443332222 4566555 5566778999999999999999766
Q ss_pred hHHHHhhH-HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHH
Q 002400 314 SKVMIKNL-DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLN 392 (927)
Q Consensus 314 ~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~ 392 (927)
++.....+ ...++.++..|.++++.+|..|+++|+.++.........-.-..++|.+++.+.+ +++.++..|+++|.+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 54322222 2367889999999999999999999999987543322222345789999999999 899999999999999
Q ss_pred hHhcCCCccccC-chHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 393 FSENCTPDILTP-YLDGIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 393 l~~~~~~~~~~~-~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
++...+.. ... .-...++.|..++.+.+..+++.++.+|+.++
T Consensus 165 l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 165 IASGGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHTSCHHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHcCCcHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 99764321 111 12257888999999999999999999999875
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.14 E-value=3e-06 Score=97.87 Aligned_cols=623 Identities=14% Similarity=0.106 Sum_probs=308.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhh-Chh--HHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHh
Q 002400 23 ETLISNLMSSSNEHRSHAEVLLSHLRQS-HPD--AFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPS 99 (927)
Q Consensus 23 ~~~L~~~~s~d~~~r~~Ae~~l~~~~~~-~p~--~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~ 99 (927)
..+|..+..+|++.|.-|-+.|..+..+ .++ ..+. .++.|-.+..-.-|++||.+.-+.-.. + .+
T Consensus 18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~eia~~i~-~ie~l~ed~~f~~r~laalvaSkvyy~----------L-g~ 85 (963)
T 4ady_A 18 APLLALLRENQDSVKTYALESINNVVDQLWSEISNELP-DIEALYDDDTFSDREMAALIASKVYYN----------L-GE 85 (963)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHHHSCTTCTTHHHHHHHHHHHHHH----------H-TC
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhhHH-HHHHHHcCCCcchHHHHHHHHHHHhee----------c-cc
Confidence 3567778899999999999999876653 111 0122 223343455556799999887655422 1 11
Q ss_pred HHHHHHHHHHH-HHh--hcchhhHHHHHHHHHHHHHhcc-----CC---------CCCccchHHHHHH-HhcCCChHHHH
Q 002400 100 TQANLKSVLLV-QLQ--NETNKSIIKKICDAVSELAASV-----LP---------DGDWPELIPFIFQ-CLVTFNDKIQE 161 (927)
Q Consensus 100 ~~~~ik~~Ll~-~l~--~~~~~~vr~~~~~~i~~ia~~~-----~~---------~~~w~~ll~~l~~-~l~s~~~~~r~ 161 (927)
..+.++=.|.. .+. .+.+..|++.++.||....... .+ ......++..++. +++++.. .
T Consensus 86 ~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae---~ 162 (963)
T 4ady_A 86 YESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASEL---K 162 (963)
T ss_dssp HHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCH---H
T ss_pred hHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCH---H
Confidence 12233333331 111 1346667887878877543221 00 0122234444443 2333332 1
Q ss_pred HHHHHHHHh--hhhhHHHHH--------HhHHHHHHHHHhhhCC--CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHh--
Q 002400 162 SALLILSRM--SQFVSEVLI--------AHGDTLHEVFSKFLGS--NNFDLRIAALEATVNFIMNCLPSLGEKERFLD-- 227 (927)
Q Consensus 162 ~al~~l~~l--~~~~~~~l~--------~~~~~l~~~l~~~l~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-- 227 (927)
.|+.++-++ .+.+.+.+. .....++.++..+... ++.+.|...++++..+. ..++.+.-....+-
T Consensus 163 ~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy-~k~~~~dy~~a~~~ai 241 (963)
T 4ady_A 163 LALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL-MNMPNCDYLTLNKVVV 241 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH-HHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH-HhCCchhHHHHHHHHH
Confidence 233333322 122222222 2445677777666542 35667888888888888 55532211111110
Q ss_pred ---hHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC-cHHHHHHHHHH-----HHHHHHHhhcc-------Cch----
Q 002400 228 ---LLPLMMRTLTEALNKGNESSAQEALELLIELAATE-PRFLRKQLVDV-----VGSMLQVAEAE-------AVF---- 287 (927)
Q Consensus 228 ---~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~l~~l-----l~~ll~~~~~~-------~~i---- 287 (927)
-...+.+.+.+++...+...+++. -..++++. ..++......+ ...+..+++++ .|+
T Consensus 242 ~LnD~~li~~if~~l~~~~d~l~ayQi---AFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl~FL~~~n 318 (963)
T 4ady_A 242 NLNDAGLALQLFKKLKEENDEGLSAQI---AFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYNTFLLNNK 318 (963)
T ss_dssp HHTCHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcccHHHHHHH---HHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHHHHHHHHhcc
Confidence 011222233333323344333331 11223221 12222211111 12233333321 011
Q ss_pred ----------hhhhCCcchhHHHHHHHHHHHHhhhch--HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhc
Q 002400 288 ----------PGFLAAPEWQKHHAVLIALAQIAEGCS--KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLG 355 (927)
Q Consensus 288 ----------~~~l~~~~~~~r~aal~al~~i~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 355 (927)
...+.+.+-...-|+..+=|-+-.|.. ..+.... +- +.......+..|...+|.+-.|-.
T Consensus 319 ~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~----~W----l~k~~~~~k~sA~aSLGlIh~g~~ 390 (963)
T 4ady_A 319 NIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANL----PW----LGKAQNWAKFTATASLGVIHKGNL 390 (963)
T ss_dssp CCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCH----HH----HHHCCTHHHHHHHHHHHHHTSSCT
T ss_pred ccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcch----hh----hhccchHHHHHHHHHhhhhccCch
Confidence 111111111111222222222222221 1222221 11 211244567788888888766543
Q ss_pred hhHHHHhHhhHHHHHHHhcc---CCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC--------hhH
Q 002400 356 PELQTQFHHRLLPALVGAMD---DFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK--------QMV 424 (927)
Q Consensus 356 ~~~~~~~~~~il~~ll~~l~---~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~--------~~v 424 (927)
. +.+..+-+.+. + .++.++..|+.+|+.+...... ..+..|...+.+.+ ..+
T Consensus 391 ~--------~gl~~L~~yL~~~~s-~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 391 L--------EGKKVMAPYLPGSRA-SSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp T--------THHHHHTTTSTTSCC-SCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred H--------HHHHHHHHhccccCC-CcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHH
Confidence 2 23444444454 3 5789999999999988766542 24455555555443 568
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHh
Q 002400 425 QEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 504 (927)
Q Consensus 425 ~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~ 504 (927)
|..++..||.+.-..+. +.+++.|.+.+.+. ....+..|..++|.+-...|. ......+++.+..
T Consensus 454 r~gAaLGLGla~~GS~~------eev~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn---~~ai~~LL~~~~e-- 518 (963)
T 4ady_A 454 LHGASLGIGLAAMGSAN------IEVYEALKEVLYND----SATSGEAAALGMGLCMLGTGK---PEAIHDMFTYSQE-- 518 (963)
T ss_dssp HHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCC---HHHHHHHHHHHhc--
Confidence 88888888876432222 13455556655431 224555555566665433332 2233445554442
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeee
Q 002400 505 GSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGI 584 (927)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (927)
. .++.++..+..+++-+. +|. +...+.+++.+..+.+ .
T Consensus 519 -~---~~e~vrR~aalgLGll~--~g~------~e~~~~li~~L~~~~d----------------p-------------- 556 (963)
T 4ady_A 519 -T---QHGNITRGLAVGLALIN--YGR------QELADDLITKMLASDE----------------S-------------- 556 (963)
T ss_dssp -C---SCHHHHHHHHHHHHHHT--TTC------GGGGHHHHHHHHHCSC----------------H--------------
T ss_pred -c---CcHHHHHHHHHHHHhhh--CCC------hHHHHHHHHHHHhCCC----------------H--------------
Confidence 1 23345555544444332 122 2233444445432111 0
Q ss_pred chhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 002400 585 KTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESY 664 (927)
Q Consensus 585 ~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 664 (927)
.-|..|+-+++.-.-.+|. . ..+..++..+....++.||+.|+.+|+.+.- +. +
T Consensus 557 -----~vRygaa~alglAyaGTGn--~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~------------g~-~-- 610 (963)
T 4ady_A 557 -----LLRYGGAFTIALAYAGTGN--N----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL------------RD-Y-- 610 (963)
T ss_dssp -----HHHHHHHHHHHHHTTTSCC--H----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS------------SS-C--
T ss_pred -----HHHHHHHHHHHHHhcCCCC--H----HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc------------CC-H--
Confidence 0122333333322222222 1 2233233333333477889888888887631 22 1
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHcc
Q 002400 665 VKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACN 744 (927)
Q Consensus 665 ~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~ 744 (927)
..++.++..+.. +.++.+|..|..++|.++...|. +.++..|....+
T Consensus 611 ------e~v~rlv~~L~~---------------------~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~ 657 (963)
T 4ady_A 611 ------TTVPRIVQLLSK---------------------SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTK 657 (963)
T ss_dssp ------SSHHHHTTTGGG---------------------CSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHh---------------------cCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHcc
Confidence 122333333333 34689999999999998755443 345566666678
Q ss_pred CCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHH
Q 002400 745 DKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKIC 809 (927)
Q Consensus 745 d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 809 (927)
|++..||++|+.+||.+.....+...|.+.++++.|...+.+.. ++..++=-++.|.|.+-
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~----~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH----QEGLAKFGACVAQGIMN 718 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS----SCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHh
Confidence 99999999999999999887777777788888888888886532 12345545666666653
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.12 E-value=1.3e-08 Score=110.69 Aligned_cols=321 Identities=15% Similarity=0.146 Sum_probs=199.9
Q ss_pred HHHHHHHHHHhhcc-----------hhhHHHHHHHHHHHHHhccCCCC-------Cc------cchHHHHHHHhcCCC--
Q 002400 103 NLKSVLLVQLQNET-----------NKSIIKKICDAVSELAASVLPDG-------DW------PELIPFIFQCLVTFN-- 156 (927)
Q Consensus 103 ~ik~~Ll~~l~~~~-----------~~~vr~~~~~~i~~ia~~~~~~~-------~w------~~ll~~l~~~l~s~~-- 156 (927)
.....|++.|.... ++.+|..++.++..|+....... .. +...+.+++++.+..
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 33456777777542 26889999999999987642211 00 112244555555432
Q ss_pred hH-----HHH-------HHHHHHHHhhhhhH--HHHHHhHHHHHHHHHhhhC----------C-CCHHHHHHHHHHHHHH
Q 002400 157 DK-----IQE-------SALLILSRMSQFVS--EVLIAHGDTLHEVFSKFLG----------S-NNFDLRIAALEATVNF 211 (927)
Q Consensus 157 ~~-----~r~-------~al~~l~~l~~~~~--~~l~~~~~~l~~~l~~~l~----------~-~~~~vr~~a~~~l~~l 211 (927)
.+ +++ .|+.+|..+...-. +.+.. ...++.+...+. + .++.++..|..+|.++
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~--~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE--LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHH--TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 444 78899998865421 11211 123444444442 1 2467899999999999
Q ss_pred HHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH--HHHHHHHHHhhccCchhh
Q 002400 212 IMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV--DVVGSMLQVAEAEAVFPG 289 (927)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~--~ll~~ll~~~~~~~~i~~ 289 (927)
. .. ++.....+.. ....++.+..++.++++++...++..+..++.......+..+. ..+|.++++
T Consensus 228 a-~~--~~~~k~~i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l--------- 294 (458)
T 3nmz_A 228 T-FG--DVANKATLCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC--------- 294 (458)
T ss_dssp H-TT--CHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH---------
T ss_pred h-CC--CcccHHHHHH-cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH---------
Confidence 8 32 2212222210 1223444444555788999999999999987642111222221 345555422
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhH--HHHHHHHHhccCCCCH----HHHHHHHHHHHHhHhh--hchhHHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNL--DQVVSMVLNSFQDPHP----RVRWAAINAIGQLSTD--LGPELQTQ 361 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l--~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~--~~~~~~~~ 361 (927)
++.+.+...++.|+.+|..++.++.+.-.... ...++.+...|.+.+. .++..|+++|..++.. ..++....
T Consensus 295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 13346788999999999999986644211111 2467888888876554 4899999999998863 12222122
Q ss_pred -hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 002400 362 -FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSS 439 (927)
Q Consensus 362 -~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~ 439 (927)
.-...+|.|+..+.+ ++..++..|+++|.+++.... +...... ...++.|..++.+.+..+++.|..+|..++...
T Consensus 375 i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCH-HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 234689999999998 889999999999999985432 2111112 356888999999999999999999999998654
Q ss_pred h
Q 002400 440 Q 440 (927)
Q Consensus 440 ~ 440 (927)
+
T Consensus 453 p 453 (458)
T 3nmz_A 453 P 453 (458)
T ss_dssp S
T ss_pred H
Confidence 3
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.12 E-value=1.4e-09 Score=107.00 Aligned_cols=189 Identities=18% Similarity=0.208 Sum_probs=142.5
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
++.++.|++.+.++++.+|..++..|+.+.. +..++.+.+.+.++++.||..|+.+++.+- . +
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~----~-- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-D----E-- 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-C----G--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-C----H--
Confidence 7889999999999999999999999998764 235666777888899999999999988875 1 1
Q ss_pred HHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHH
Q 002400 222 KERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHA 301 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~a 301 (927)
..+|.++ ..+.++++.++..++..+..+... ..++.+. +.+++++|.+|..
T Consensus 81 -----~~~~~L~----~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~----------~~l~d~~~~vr~~ 131 (211)
T 3ltm_A 81 -----RAVEPLI----KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLI----------KALKDEDWFVRIA 131 (211)
T ss_dssp -----GGHHHHH----HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH----------HHTTCSSHHHHHH
T ss_pred -----HHHHHHH----HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHH----------HHHhCCCHHHHHH
Confidence 2334333 445677888888888888776432 2233333 4556889999999
Q ss_pred HHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCch
Q 002400 302 VLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 302 al~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
++.+|+.+... ..++.+...++|+++.||..|+++|+.+.. +..++.|...+.+ +++.
T Consensus 132 a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~ 189 (211)
T 3ltm_A 132 AAFALGEIGDE----------RAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET-GTGF 189 (211)
T ss_dssp HHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH-CCHH
T ss_pred HHHHHHHcCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC-CCHH
Confidence 99999988541 356677788899999999999999999853 3467777788888 8899
Q ss_pred HHHHHHHHHHHhHhcCC
Q 002400 382 VQAHAASAVLNFSENCT 398 (927)
Q Consensus 382 v~~~a~~al~~l~~~~~ 398 (927)
||..|..+|..+....+
T Consensus 190 vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 99999999988876543
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.10 E-value=1.6e-08 Score=103.42 Aligned_cols=182 Identities=20% Similarity=0.206 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhh-hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHH-H
Q 002400 246 SSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPG-FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLD-Q 323 (927)
Q Consensus 246 ~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~-~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~ 323 (927)
+.+..+++.|..+++.....-.-.-...+|.++ . ++++++..+|..|+++||.++.+.+..-...+. .
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv----------~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g 124 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLV----------GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG 124 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHH----------HTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHH----------HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 345667777777776422110001112344444 4 677889999999999999999876542222222 4
Q ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc
Q 002400 324 VVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI 401 (927)
Q Consensus 324 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 401 (927)
.+|.++..|+ ++++.+|..|+|+|+.++....+.. ..+. ...+|.|+..+.+ +++.++..|+++|.+++.... +.
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~-~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~-~~ 201 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL-LQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHP-EH 201 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCG-GG
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH-HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCh-HH
Confidence 6677777776 4689999999999999987654433 2232 4789999999999 899999999999999997732 32
Q ss_pred ccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400 402 LTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 440 (927)
Q Consensus 402 ~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~ 440 (927)
..... ..+++.|+.+|.+.+..+++.++.+|+.++...+
T Consensus 202 ~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 22222 2578899999999999999999999999987643
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=3.7e-09 Score=103.14 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=133.3
Q ss_pred ccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch
Q 002400 141 WPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG 220 (927)
Q Consensus 141 w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~ 220 (927)
-+...+.+++.+.++++.+|..++..|+.+... ..++.+.+.+.++++.+|..|+.+++.+- .+
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-----~~- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIG-----DE- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----CG-
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhC-----CH-
Confidence 356778888888888888888888888876541 24555666777888888888888887765 11
Q ss_pred hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHH
Q 002400 221 EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHH 300 (927)
Q Consensus 221 ~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~ 300 (927)
..+|.++ ..+.++++.++..++..+..+... ..++.+. +.+++++|.+|.
T Consensus 76 ------~~~~~L~----~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~----------~~l~d~~~~vr~ 125 (201)
T 3ltj_A 76 ------RAVEPLI----KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLI----------KALKDEDWFVRI 125 (201)
T ss_dssp ------GGHHHHH----HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH----------HHTTCSSHHHHH
T ss_pred ------HHHHHHH----HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHH----------HHHcCCCHHHHH
Confidence 1233333 344567777888888877765432 1233333 455678899999
Q ss_pred HHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCc
Q 002400 301 AVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNP 380 (927)
Q Consensus 301 aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~ 380 (927)
+++.+|+.+.. +..++.+...+.|+++.||..|+++|+.+.. ...++.+...+.+ +++
T Consensus 126 ~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d-~~~ 183 (201)
T 3ltj_A 126 AAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET-GTG 183 (201)
T ss_dssp HHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH-CCH
T ss_pred HHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC-CCH
Confidence 99999998754 2356677778889999999999999998742 2456777777788 889
Q ss_pred hHHHHHHHHHHHhH
Q 002400 381 RVQAHAASAVLNFS 394 (927)
Q Consensus 381 ~v~~~a~~al~~l~ 394 (927)
.||..|..+|..+-
T Consensus 184 ~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 184 FARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.05 E-value=6.3e-09 Score=101.46 Aligned_cols=186 Identities=20% Similarity=0.249 Sum_probs=143.6
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc
Q 002400 182 GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAAT 261 (927)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (927)
.+...+.+++.+.++++.+|..|+.+|+.+- . ...+|.++ ..+.++++.++..++..+..+...
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-~-----------~~~~~~L~----~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG-D-----------ERAVEPLI----KALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-C-----------GGGHHHHH----HHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcC-C-----------hhHHHHHH----HHHcCCCHHHHHHHHHHHHhhCCH
Confidence 3567788899999999999999999998876 1 12344444 444577888888888888776432
Q ss_pred CcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHH
Q 002400 262 EPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRW 341 (927)
Q Consensus 262 ~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~ 341 (927)
..++.+. +.+.++++.+|.+|+.+|+.+... ..++.+...+.|+++.||.
T Consensus 76 ----------~~~~~L~----------~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~ 125 (201)
T 3ltj_A 76 ----------RAVEPLI----------KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRI 125 (201)
T ss_dssp ----------GGHHHHH----------HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHH
T ss_pred ----------HHHHHHH----------HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHH
Confidence 2233333 455688999999999999987542 3566677788999999999
Q ss_pred HHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCC
Q 002400 342 AAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGK 421 (927)
Q Consensus 342 ~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~ 421 (927)
.|+++++.+.. ...++.+...+.| +++.||..|+.+|+.+.. +..++.|..++++.+
T Consensus 126 ~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 126 AAAFALGEIGD-----------ERAVEPLIKALKD-EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGT 182 (201)
T ss_dssp HHHHHHHHHTC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCC
Confidence 99999999853 2567888899999 899999999999998821 346677777888899
Q ss_pred hhHHHHHHHHHHHHH
Q 002400 422 QMVQEGALTALASVA 436 (927)
Q Consensus 422 ~~v~~~a~~al~~l~ 436 (927)
+.+|..+..+++.+.
T Consensus 183 ~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 183 GFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888753
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.05 E-value=4.6e-09 Score=103.35 Aligned_cols=188 Identities=20% Similarity=0.253 Sum_probs=141.7
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc
Q 002400 184 TLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEP 263 (927)
Q Consensus 184 ~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (927)
..++.+...+.++++.+|..|+..|+.+- . ...+|.++ ..+.++++.++..++..+..+...
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-~-----------~~~~~~L~----~~l~~~~~~vr~~a~~aL~~~~~~-- 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG-D-----------ERAVEPLI----KALKDEDAWVRRAAADALGQIGDE-- 80 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHH----HHTTCSCHHHHHHHHHHHHHHCCG--
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-C-----------ccHHHHHH----HHHcCCCHHHHHHHHHHHHhhCCH--
Confidence 45677778889999999999999998876 1 12344443 445577888998998888776531
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHH
Q 002400 264 RFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAA 343 (927)
Q Consensus 264 ~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a 343 (927)
..++.+. +.++++++.+|.+++.+|+.+.. +..++.+...+.|+++.||..|
T Consensus 81 --------~~~~~L~----------~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a 132 (211)
T 3ltm_A 81 --------RAVEPLI----------KALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAA 132 (211)
T ss_dssp --------GGHHHHH----------HHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHH
T ss_pred --------HHHHHHH----------HHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHH
Confidence 2233333 45668899999999999998854 1356677778899999999999
Q ss_pred HHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChh
Q 002400 344 INAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQM 423 (927)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~ 423 (927)
+++|+.+.. ...++.+...+.| +++.||..|+.+|..+.. +..++.|..++++.++.
T Consensus 133 ~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 189 (211)
T 3ltm_A 133 AFALGEIGD-----------ERAVEPLIKALKD-EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF 189 (211)
T ss_dssp HHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHcCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence 999999853 2467888889988 899999999999998832 45677788888889999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002400 424 VQEGALTALASVADSSQ 440 (927)
Q Consensus 424 v~~~a~~al~~l~~~~~ 440 (927)
||..+..+|+.+....+
T Consensus 190 vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 99999999988875443
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.4e-06 Score=94.42 Aligned_cols=370 Identities=10% Similarity=0.064 Sum_probs=233.0
Q ss_pred cCHhHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhccCCC-CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhh
Q 002400 96 LAPSTQANLKSVLLVQLQNE-TNKSIIKKICDAVSELAASVLPD-GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQF 173 (927)
Q Consensus 96 l~~~~~~~ik~~Ll~~l~~~-~~~~vr~~~~~~i~~ia~~~~~~-~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~ 173 (927)
++..-|+.|....+..|..- ++..+|..++-++.++.....+. ..-.++.+.+...+.+++...|+.|+..|.++.-.
T Consensus 285 i~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 44555666666655555431 24578888888898887754332 24457888888888887766799999999998754
Q ss_pred hH--HHHHHhHHHHHHHHHhhhCC-CCHHHHHHHHHHHHHHHHhhCCCch----hHH-----------------------
Q 002400 174 VS--EVLIAHGDTLHEVFSKFLGS-NNFDLRIAALEATVNFIMNCLPSLG----EKE----------------------- 223 (927)
Q Consensus 174 ~~--~~l~~~~~~l~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~----~~~----------------------- 223 (927)
-. +.+... ..+++.+...+.+ .+..+.+.++..+.++. .+.++.. ...
T Consensus 365 ~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt-~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~ 442 (778)
T 3opb_A 365 ASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLS-TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK 442 (778)
T ss_dssp SHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT-CCCCCCCCCCC------------------CCTHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCCcccchhhhhhhhhhhhccccCcccCcccccccch
Confidence 32 333322 3556667777764 46678889999999988 6544210 000
Q ss_pred -hHHhhH------HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcc-
Q 002400 224 -RFLDLL------PLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPE- 295 (927)
Q Consensus 224 -~~~~~~------p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~- 295 (927)
.+..+. ...++.+..++.++++..+..+...+..++......-.-.-...++.+++++ .+..
T Consensus 443 ~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL----------~s~~~ 512 (778)
T 3opb_A 443 EDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL----------ANKQD 512 (778)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHT----------TCC--
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----------hcCCC
Confidence 000000 1123344455566778888888888888876532111111123345555333 2222
Q ss_pred h--hHHHHHHHHHHHHhhhch-HHHH-hh-HHHHHHHHHhccCC-CCH-------------HHHHHHHHHHHHhHhhhc-
Q 002400 296 W--QKHHAVLIALAQIAEGCS-KVMI-KN-LDQVVSMVLNSFQD-PHP-------------RVRWAAINAIGQLSTDLG- 355 (927)
Q Consensus 296 ~--~~r~aal~al~~i~~~~~-~~~~-~~-l~~l~~~l~~~l~d-~~~-------------~vr~~a~~~l~~~~~~~~- 355 (927)
. ..|..|..+|+.+..... .... .+ ....++.++..|.. +.. .-+..|+.+|+.++..-.
T Consensus 513 ~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n 592 (778)
T 3opb_A 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETS 592 (778)
T ss_dssp -CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSH
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcc
Confidence 1 378999999999886543 2211 11 11577778887762 221 237789999999988532
Q ss_pred --hhHHHHhHh--hHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc-cCch----HH---HHHHHHHHhcCCChh
Q 002400 356 --PELQTQFHH--RLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL-TPYL----DG---IVSKLLVLLQNGKQM 423 (927)
Q Consensus 356 --~~~~~~~~~--~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~l----~~---l~~~L~~~l~~~~~~ 423 (927)
.+.....+. ..+|.+...+.+ ++..||.+|++++.+++..-. .+ ..+. +. =++.|+.+++..+..
T Consensus 593 ~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e--~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~ 669 (778)
T 3opb_A 593 DGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMSHPL--TIAAKFFNLENPQSLRNFNILVKLLQLSDVE 669 (778)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSGG--GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred cchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCcH--HHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence 223233443 589999999998 889999999999999996322 11 1221 22 277888999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHH
Q 002400 424 VQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGM 482 (927)
Q Consensus 424 v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 482 (927)
+|.+|..+++.+....+......+ ...++.+...++... ++..+|.+++-++..++.
T Consensus 670 ~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~--~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 670 SQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI--DDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Confidence 999999999998754443222222 246666677666532 345688888889888886
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.98 E-value=2.8e-07 Score=81.41 Aligned_cols=213 Identities=15% Similarity=0.158 Sum_probs=168.3
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhc-CCChHHHHHHHHHHHHhhhhhHHHHHHhH
Q 002400 104 LKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLV-TFNDKIQESALLILSRMSQFVSEVLIAHG 182 (927)
Q Consensus 104 ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~l~~~~ 182 (927)
+...++..|.++ -..|+..+..++..++.. +| .-...++..|+.++. |..-.........++.++..-|+. +
T Consensus 33 ~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~-~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~----v 105 (253)
T 2db0_A 33 VLKKLIELLDDD-LWTVVKNAISIIMVIAKT-RE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL----V 105 (253)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT-CG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH----H
T ss_pred HHHHHHHHhccH-HHHHHHhHHHHHHHHHHH-hH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH----H
Confidence 455677777765 778998888888888753 33 233345555666543 555555566777888888777764 5
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC
Q 002400 183 DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE 262 (927)
Q Consensus 183 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (927)
..++|++.....-.++.+|.....+|..++ .. ...+++.+..-+..+++++|......+++|+..+.++.
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIa-ra---------nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIA-KA---------NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHH-HH---------CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHH-Hh---------ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 678999998888889999999999999988 43 34578888888888888889888899999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHH
Q 002400 263 PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWA 342 (927)
Q Consensus 263 ~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 342 (927)
++++.|+++.++. ++.|.+--+|-+|+.+|+.+++..++ +..++...+..++|.+..|...
T Consensus 176 ~~yv~PfLprL~a--------------LL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 176 FKYVNPFLPRIIN--------------LLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp HHHHGGGHHHHHG--------------GGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHH
T ss_pred ccccCcchHHHHH--------------HHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHH
Confidence 9998888877774 55688999999999999999997665 6778888888999999999999
Q ss_pred HHHHHHHhHh
Q 002400 343 AINAIGQLST 352 (927)
Q Consensus 343 a~~~l~~~~~ 352 (927)
.-..++++.-
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888753
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.97 E-value=2.3e-07 Score=81.95 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=163.1
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchh
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGE 221 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 221 (927)
.+++..++..+.++-+.++.+|+.++..+.+.+++...+....++-++.+ ++.........++++.++ .. +
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la-~i--~--- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMA-KE--K--- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHH-HH--C---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHH-Hh--C---
Confidence 46899999999888889999999999999999988777766666655543 556677778888999888 32 1
Q ss_pred HHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHH
Q 002400 222 KERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHA 301 (927)
Q Consensus 222 ~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~a 301 (927)
.+...+.+|. +..-..-+++......-..+.+++...|..+......+. .++++++-..|-+
T Consensus 102 Pe~v~~vVp~----lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~--------------smltskd~~Dkl~ 163 (253)
T 2db0_A 102 PELVKSMIPV----LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFM--------------SMLSSKNREDKLT 163 (253)
T ss_dssp HHHHHHHHHH----HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH--------------HHTSCSSHHHHHH
T ss_pred HHHHHhhHHH----HHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHH--------------HHhcCCChHHHHH
Confidence 2334444444 333233467887777777888888887777665555555 3456888999999
Q ss_pred HHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCch
Q 002400 302 VLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 302 al~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
|+..++++++...+...| .+|.+...|.|.+..||.+|..+|+.+++.- + -+..++-.-++.++| .+..
T Consensus 164 aLnFi~alGen~~~yv~P----fLprL~aLL~D~deiVRaSaVEtL~~lA~~n-p-----klRkii~~kl~e~~D-~S~l 232 (253)
T 2db0_A 164 ALNFIEAMGENSFKYVNP----FLPRIINLLHDGDEIVRASAVEALVHLATLN-D-----KLRKVVIKRLEELND-TSSL 232 (253)
T ss_dssp HHHHHHTCCTTTHHHHGG----GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-H-----HHHHHHHHHHHHCCC-SCHH
T ss_pred HHHHHHHHhccCccccCc----chHHHHHHHcCcchhhhHHHHHHHHHHHHcC-H-----HHHHHHHHHHHHhcC-cHHH
Confidence 999999999987764444 4556778899999999999999999998742 2 245667777788999 8888
Q ss_pred HHHHHHHHHHHhH
Q 002400 382 VQAHAASAVLNFS 394 (927)
Q Consensus 382 v~~~a~~al~~l~ 394 (927)
|+.....+|+.+.
T Consensus 233 v~~~V~egL~rl~ 245 (253)
T 2db0_A 233 VNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.88 E-value=4.8e-07 Score=95.30 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=156.0
Q ss_pred ChHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHH--hhHHH
Q 002400 156 NDKIQESALLILSRMSQFVSEV--LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFL--DLLPL 231 (927)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~--l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~~p~ 231 (927)
++.++..|..+|..++..-.+. ........+|.|.+.|.+++++++..|+.+|.++. .. +++..+..+. ..+|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs-~~-~~~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS-WR-ADVNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH-TT-CCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh-cc-CCHHHHHHHHHCCCHHH
Confidence 4678999999999998553321 11123467899999999999999999999999998 32 1222222322 45676
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHH--HHHHHHHHHHHhhccCchhhhhCCc-chhHHHHHHHHHHH
Q 002400 232 MMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQ--LVDVVGSMLQVAEAEAVFPGFLAAP-EWQKHHAVLIALAQ 308 (927)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--l~~ll~~ll~~~~~~~~i~~~l~~~-~~~~r~aal~al~~ 308 (927)
+++.+. .++++++...+...+..++......-... ....+|.+.+++.+. .+. ++..++.|..+|..
T Consensus 175 Lv~lL~---~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~-------~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 175 LMECAL---EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-------SQTNTLAIIESGGGILRN 244 (354)
T ss_dssp HHHHHH---HCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC-------CSSSCCHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC-------CCcccHHHHHHHHHHHHH
Confidence 666543 35677888888888888886332211111 124566666433221 011 23688889999998
Q ss_pred Hhh---hchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHH
Q 002400 309 IAE---GCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQA 384 (927)
Q Consensus 309 i~~---~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~ 384 (927)
++. +.++......+ ..++.++..|.+.+..++..|+++|+.++.........-.-...+|.|++.+.+ +++.++.
T Consensus 245 Ls~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s-~~~~i~~ 323 (354)
T 3nmw_A 245 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS-KHKMIAM 323 (354)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC-SSHHHHH
T ss_pred HHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC-CCHHHHH
Confidence 886 44442222221 367889999999999999999999999985322222122335689999999998 8999999
Q ss_pred HHHHHHHHhHhcCC
Q 002400 385 HAASAVLNFSENCT 398 (927)
Q Consensus 385 ~a~~al~~l~~~~~ 398 (927)
.|+++|.+++...+
T Consensus 324 ~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 324 GSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCH
Confidence 99999999998754
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.87 E-value=1.5e-07 Score=99.20 Aligned_cols=267 Identities=16% Similarity=0.171 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhhhhhH--HHHHHhHHHHHHHHHhhhC----------C-CCHHHHHHHHHHHHHHHHhhCCCchhHHh
Q 002400 158 KIQESALLILSRMSQFVS--EVLIAHGDTLHEVFSKFLG----------S-NNFDLRIAALEATVNFIMNCLPSLGEKER 224 (927)
Q Consensus 158 ~~r~~al~~l~~l~~~~~--~~l~~~~~~l~~~l~~~l~----------~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 224 (927)
.....|+.+|..++..-. +.+.. ...++.+...+. + .++.++..|+.+|.++. .. ++..+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~--~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa-~~--~~~~k~~ 121 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNE--LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT-FG--DVANKAT 121 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHT-SS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHH-cC--CHHHHHH
Confidence 445678888888875521 11111 123333333331 1 25779999999999988 32 2212222
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH--HHHHHHHHHhhccCchhhhhCCcchhHHHHH
Q 002400 225 FLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV--DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV 302 (927)
Q Consensus 225 ~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~--~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa 302 (927)
+.. ....++.+..++.++++++...+...+..++.......+..+. ..+|.+++++ ..+.+...++.|
T Consensus 122 i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL---------~~~~~~~~~~~A 191 (354)
T 3nmw_A 122 LCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA---------LEVKKESTLKSV 191 (354)
T ss_dssp HHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH---------HHCCCHHHHHHH
T ss_pred HHH-cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH---------hcCCCHHHHHHH
Confidence 210 1223344444455788899999999999998642111222221 3455554221 234567889999
Q ss_pred HHHHHHHhhhchHHHHhhH--HHHHHHHHhccCCCCH----HHHHHHHHHHHHhHhhh--chhHHHHh-HhhHHHHHHHh
Q 002400 303 LIALAQIAEGCSKVMIKNL--DQVVSMVLNSFQDPHP----RVRWAAINAIGQLSTDL--GPELQTQF-HHRLLPALVGA 373 (927)
Q Consensus 303 l~al~~i~~~~~~~~~~~l--~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~--~~~~~~~~-~~~il~~ll~~ 373 (927)
+.+|..++.++.+.-.... ...++.+...|.++++ .++..|+++|..++..+ .++..... -...+|.|+..
T Consensus 192 ~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~l 271 (354)
T 3nmw_A 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271 (354)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHH
Confidence 9999999986644211111 2467888888876654 48999999999998631 22221222 24589999999
Q ss_pred ccCCCCchHHHHHHHHHHHhHhcCCCccccCch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 002400 374 MDDFQNPRVQAHAASAVLNFSENCTPDILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l-~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~ 441 (927)
+.+ ++..++..|+++|.+++.... +...... ...++.|..++++.+..+|+.+..+|..++...+.
T Consensus 272 L~~-~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 272 LKS-HSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTC-SCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HcC-CChHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 998 889999999999999975432 2111111 25688899999999999999999999999876444
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.87 E-value=3.7e-07 Score=93.36 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH--HhhHHHHH
Q 002400 157 DKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSK-FLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF--LDLLPLMM 233 (927)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~-~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~p~ll 233 (927)
...|..|+..|..+++.....-.-.-...++.+.. .|.++++.+|..|+.++++++ .. ++..+..+ ...+|.++
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia-~~--n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS-QN--VAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHH-TT--CHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hC--CHHHHHHHHHCCCHHHHH
Confidence 35788899999999886543211112245677788 999999999999999999999 43 22112222 13566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH-HHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhh
Q 002400 234 RTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV-DVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~ 312 (927)
+.+.. +.+..++..++..+..++...+........ ..+|.+. ..+++++.+.+..|+++|+.++.+
T Consensus 131 ~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~----------~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 131 RLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM----------RAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH----------HHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH----------HHHcCCCHHHHHHHHHHHHHHHhC
Confidence 55542 346788899999999998765543332222 4555555 444567899999999999999987
Q ss_pred chHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHH-----HhHhhHHHHHHHhccCCC-CchHHHH
Q 002400 313 CSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQT-----QFHHRLLPALVGAMDDFQ-NPRVQAH 385 (927)
Q Consensus 313 ~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-----~~~~~il~~ll~~l~~~~-~~~v~~~ 385 (927)
.++....... .+++.++..|.++++.||..|+.+|+.++......... ..+..++..-++.++... ...+...
T Consensus 198 ~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~ 277 (296)
T 1xqr_A 198 HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEF 277 (296)
T ss_dssp CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 5543222222 46788888899999999999999999998863221110 112344444455555312 3566677
Q ss_pred HHHHHHHhH
Q 002400 386 AASAVLNFS 394 (927)
Q Consensus 386 a~~al~~l~ 394 (927)
+...+.++.
T Consensus 278 ~~~il~~~f 286 (296)
T 1xqr_A 278 CEKLLQTCF 286 (296)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 777776665
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.85 E-value=5.9e-08 Score=99.69 Aligned_cols=189 Identities=13% Similarity=0.151 Sum_probs=144.1
Q ss_pred hhhhhCCcchhHHHHHHHHHHHHhhhchHHH-----HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchh----
Q 002400 287 FPGFLAAPEWQKHHAVLIALAQIAEGCSKVM-----IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPE---- 357 (927)
Q Consensus 287 i~~~l~~~~~~~r~aal~al~~i~~~~~~~~-----~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---- 357 (927)
+.+.+.+.+|+.|..|+..+..+....+... ...+..+.+.+.+.+.|.|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4567889999999999999988877654321 1123345567778899999999999999999998765432
Q ss_pred -HHHHhHhhHHHHHHHh-ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002400 358 -LQTQFHHRLLPALVGA-MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 435 (927)
Q Consensus 358 -~~~~~~~~il~~ll~~-l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l 435 (927)
....+...++|.++.. +.+ ..+.++..+..++..+++... ....+++.+...+++.++.++..++..|..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDT------SITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSS------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 2245677889999875 788 889999999999988887653 2345677788889999999999999999999
Q ss_pred HHHhhhh---hHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCc
Q 002400 436 ADSSQGQ---FQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGK 486 (927)
Q Consensus 436 ~~~~~~~---~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~ 486 (927)
....|.. ..+.++.+++.+...+.+ .+..+|..|+++++.+-+.+|+
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d----~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGH----GDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTC----SSHHHHHHHHHHHHHHHTC---
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCc
Confidence 9887653 345677778888877755 4678999999999999998884
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.84 E-value=2e-07 Score=109.12 Aligned_cols=292 Identities=12% Similarity=0.213 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhch--hHHHHhHhhHHHHHHHh
Q 002400 296 WQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGP--ELQTQFHHRLLPALVGA 373 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~il~~ll~~ 373 (927)
...+..+...+..+..+......-. ..+++.+.+.+.+...- +.|+.+++.+++..+. .. .+|+-.++|.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHH
Confidence 4556666777776655421100011 26788888888886544 9999999999976642 44 67888899999999
Q ss_pred ccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHH
Q 002400 374 MDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQGQFQKYYDAVMP 452 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~ 452 (927)
..| +...||.+|-.+...++..+++.. +..+++.|+..+.+. .|..+..++.+++.++...+..+..+++.++|
T Consensus 104 ~~d-k~~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p 178 (986)
T 2iw3_A 104 AGN-KDKEIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIP 178 (986)
T ss_dssp TTC-SSHHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hcC-CchHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhc
Confidence 999 899999999999999999988654 366777777777655 69999999999999999998889999999999
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHh--c
Q 002400 453 YLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCL--G 530 (927)
Q Consensus 453 ~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 530 (927)
.+...+.+ ....++.+|..++..++..++...+.|+.+.+++.+.+ | +.+-.|+..++... .
T Consensus 179 ~~~~~~~d----~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~----------p--~~~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 179 VLSETMWD----TKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD----------P--TEVPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHTTC----SSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC----------T--THHHHHHHHHTTCCCCS
T ss_pred chHhhccc----CcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC----------h--hhhHHHHHHhhcCeeEe
Confidence 99998754 45679999999999999999988899999988887652 1 11333444443221 1
Q ss_pred cccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhc--c
Q 002400 531 QEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELK--E 608 (927)
Q Consensus 531 ~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~--~ 608 (927)
+--.|-|.-++|.|...+.... + ..|..++-.+..+++-.. .
T Consensus 243 ~v~~~~l~~~~p~l~r~l~~~~----------------------------------~--~~~r~~~~~~~n~~~lv~~~~ 286 (986)
T 2iw3_A 243 EVTPATLSIMVPLLSRGLNERE----------------------------------T--GIKRKSAVIIDNMCKLVEDPQ 286 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSS----------------------------------H--HHHHHHHHHHHHHHTTCCCHH
T ss_pred eecchhHHHHHHHHHhhhccCc----------------------------------c--hhheeeEEEEcchhhhcCCHH
Confidence 1224667778888888885321 1 123445555666665443 3
Q ss_pred cccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 002400 609 GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648 (927)
Q Consensus 609 ~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~ 648 (927)
...||++.++|.+-+..+.-.++++|..|-.++..|.+..
T Consensus 287 ~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 287 VIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 5788999999998887777678999999999999998764
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.81 E-value=2.6e-07 Score=90.88 Aligned_cols=187 Identities=12% Similarity=0.142 Sum_probs=146.0
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchh---HHHHhHhh
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPE---LQTQFHHR 365 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~ 365 (927)
..+-+.+|+.|.+|+..|....+..++.....++-++.-+.-.+.|.|+.|-..++..+..+...+... +...-...
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 344477999999999999988887777666667767776666777999999999999999887665432 21222468
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQK 445 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 445 (927)
++|.|+..++| +...||..+-.++..+...+++ ..+++.+...+++.++.+|+.++..++.+....|...
T Consensus 133 ~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-- 202 (266)
T 2of3_A 133 FVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-- 202 (266)
T ss_dssp HHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--
T ss_pred HHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--
Confidence 99999999999 8899999999999888765542 3467778888899999999999999999999888662
Q ss_pred hHHHHH---HHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhh
Q 002400 446 YYDAVM---PYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDD 492 (927)
Q Consensus 446 ~~~~i~---~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~ 492 (927)
...+ |.+.+.+.+ .+..+|..|+.|+..+-..+| +.+..+
T Consensus 203 --~~~l~~~~~ia~ll~D----~d~~VR~aAl~~lve~y~~~G-d~v~k~ 245 (266)
T 2of3_A 203 --LKSLSVEKTVAPFVGD----KDVNVRNAAINVLVACFKFEG-DQMWKA 245 (266)
T ss_dssp --GGGGCHHHHHGGGGGC----SSHHHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred --cccccchHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 2344 666666543 567899999999999999999 544444
No 88
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.67 E-value=6.3e-06 Score=95.19 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=116.6
Q ss_pred hCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHH
Q 002400 291 LAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPAL 370 (927)
Q Consensus 291 l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~l 370 (927)
..+.+|..|.+++.++|....|.++ ...++.++..+. .|++..||++|..+||.+.-.- + +.++.+
T Consensus 551 ~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~~g~-~--------e~v~rl 616 (963)
T 4ady_A 551 LASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVLLRD-Y--------TTVPRI 616 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTSSS-C--------SSHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhccCC-H--------HHHHHH
Confidence 3468899999999999876666554 122333444433 5778899999999999875321 1 345666
Q ss_pred HHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHH
Q 002400 371 VGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAV 450 (927)
Q Consensus 371 l~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i 450 (927)
+..+.+..++.||..++.+|+.++...+ .+.+++.|..+..+.+..||..|+.++|.+.....+...|.+..+
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~-------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKG-------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCC-------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence 6655544789999999999998875443 256778888888999999999999999999866555555666777
Q ss_pred HHHHHHHHhcccCcchhhHHHHHHHHHHHHH
Q 002400 451 MPYLKAILVNANDKSNRMLRAKSMECISLVG 481 (927)
Q Consensus 451 ~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~ 481 (927)
...|.+.+.+.. ++...|..+.-+.|.+-
T Consensus 690 l~~L~~~~~dk~--~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 690 NKNFLSVITNKH--QEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHHCSS--SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccc--ccHHHHHHHHHHHHHHh
Confidence 777777665422 23344544544555443
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.62 E-value=4.3e-05 Score=88.83 Aligned_cols=156 Identities=11% Similarity=0.168 Sum_probs=96.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHH-HHhccCCCCchHHHHHHHHHHHhHhcCCCcc
Q 002400 323 QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPAL-VGAMDDFQNPRVQAHAASAVLNFSENCTPDI 401 (927)
Q Consensus 323 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~l-l~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 401 (927)
.++|.+ +.|+++++..|..||++|+.++..-...- .-....++..+ ...+.| ++..||..|+.+|.+++...+.+.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~-l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRK-LLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHH-HHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchH
Confidence 345544 45889999999999999999997422111 23344566555 556888 899999999999999987655432
Q ss_pred ccC-chHHHHHHHHHHhcC-------C-------C-------hhHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHHHHHH
Q 002400 402 LTP-YLDGIVSKLLVLLQN-------G-------K-------QMVQEGALTALASVADSSQGQFQKYY-DAVMPYLKAIL 458 (927)
Q Consensus 402 ~~~-~l~~l~~~L~~~l~~-------~-------~-------~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~L~~~l 458 (927)
... +-..+++.|..+++. . . +.+.+.++.++..++......+.... ...+|.|...+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 111 111233333333321 1 0 12345567777787776665443322 35566666666
Q ss_pred hcccCcchhhHHHHHHHHHHHHHH
Q 002400 459 VNANDKSNRMLRAKSMECISLVGM 482 (927)
Q Consensus 459 ~~~~~~~~~~lr~~a~~~l~~l~~ 482 (927)
.... .....++..|.+|+..+..
T Consensus 192 ~~~~-~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 192 ISAD-IAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHC-CSCHHHHHHHHHHHHHHHT
T ss_pred HhcC-CCcHHHHHHHHHHHHHHhc
Confidence 5422 2345688889999988764
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.52 E-value=5.2e-07 Score=94.59 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=160.6
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhh---------cchhhHHHHHHHHHHHHHhccC
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQN---------ETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~---------~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
++.-++|+-||..||..+..+......+...+. .+--.|+-.|.- .....||-.+|++++.+ .+..
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp 259 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLI 259 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTS
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCC
Confidence 789999999999999999877322222323333 344444444432 24668999999999999 6544
Q ss_pred CCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 002400 137 PDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCL 216 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 216 (927)
+ . -..+..++..+..+..++|++|+..|.++.+.+ ..++.+++.+..+|+|.+.+||..|..+|..++
T Consensus 260 ~-e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-----~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---- 327 (800)
T 3oc3_A 260 G-P--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-----EDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---- 327 (800)
T ss_dssp C-S--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-----CCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----
T ss_pred h-h--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-----HHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc----
Confidence 3 3 456666665557788999999999999993322 127889999999999999999999998887776
Q ss_pred CCchhHHhHHhhHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCc
Q 002400 217 PSLGEKERFLDLLPLMMRTLTEALNKGNE--SSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAP 294 (927)
Q Consensus 217 ~~~~~~~~~~~~~p~ll~~l~~~l~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~ 294 (927)
. ...++.++..++.++.+.|+ ......+..+..++..++... ..+.++|.+. .++.++
T Consensus 328 -~-------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~----------PFLRHt 387 (800)
T 3oc3_A 328 -I-------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIF----------PCFTSP 387 (800)
T ss_dssp -C-------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTG----------GGGTCS
T ss_pred -c-------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHH----------hhhcCC
Confidence 1 13577888899988875432 223455667777665442100 0013343333 566788
Q ss_pred chhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHh-ccCCCCHHHHHHHHHHHH
Q 002400 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLN-SFQDPHPRVRWAAINAIG 348 (927)
Q Consensus 295 ~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~ 348 (927)
-..+|.|++.++..+.. ..++..+++ .|-+++..|+..+..+..
T Consensus 388 ITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88999999999977661 234444443 356788999988887774
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.50 E-value=7.5e-06 Score=80.56 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=145.1
Q ss_pred HhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHH---
Q 002400 240 LNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKV--- 316 (927)
Q Consensus 240 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~--- 316 (927)
+-+.|......+++.+.+..+..+..+...++-+++.+. -.+.+.+..+-..++..|..+.....+.
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~----------lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCT----------LRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHH----------HHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH----------HHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345677777788888888776666555445554554332 2333668888888888888876654331
Q ss_pred HHhh-HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 317 MIKN-LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 317 ~~~~-l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
+.++ ...++|.++..+.|+...||..+-.++..+...+++. .+++.+++.+.+ +++++|..++..+..+++
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKS-KNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHH
Confidence 2232 4678999999999999999999999998887655442 467778889988 899999999999999998
Q ss_pred cCCCccccCchHHHH---HHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Q 002400 396 NCTPDILTPYLDGIV---SKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAI 457 (927)
Q Consensus 396 ~~~~~~~~~~l~~l~---~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~ 457 (927)
..+.. | ...+ +.+..++++.+..||..|+.++..+-...|+.+..++..+-+.-.+.
T Consensus 197 ~~G~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~ 256 (266)
T 2of3_A 197 NAGIS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSL 256 (266)
T ss_dssp HHCSG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHH
T ss_pred hcCCC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHH
Confidence 87754 2 2234 77788899999999999999999999999998877776544443333
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.48 E-value=4.6e-06 Score=86.45 Aligned_cols=290 Identities=11% Similarity=0.118 Sum_probs=158.9
Q ss_pred cccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhh
Q 002400 94 TRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQF 173 (927)
Q Consensus 94 ~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~ 173 (927)
..++..+-..+.-.+++.+.+. +..+|+.+--.+..++.. + +..--..+.+..-++++++-+|-.|+.+++.+.+.
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~-d~~lKrLvYLyl~~~~~~--~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~ 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSN-DPTLRRMCYLTIKEMSCI--A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCC-CHHHHHHHHHHHHHHTTT--S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT
T ss_pred CCCchhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH
Confidence 3466666667777778888875 888888766666665554 3 22224566777788899999999999999998753
Q ss_pred hHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHH
Q 002400 174 VSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALE 253 (927)
Q Consensus 174 ~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~ 253 (927)
- .++.+.+.+.+++.|.++.||.+|+-+...++ ... .+++..+++.+.+++.+.++-+...|+.
T Consensus 135 ~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~-~~~---------pe~v~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 T------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLL-KCS---------FDVVKRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp T------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT-TTC---------HHHHHTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-ccC---------HHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 2 35568888999999999999999999998888 422 1234456667777777788888889999
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC
Q 002400 254 LLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ 333 (927)
Q Consensus 254 ~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~ 333 (927)
.+.++.+.++. .+..+++.+-+ ..+. ..|.. +..+..+...+++.....-..+++.+...|+
T Consensus 199 lL~ei~~~d~~----a~~kLv~~l~~---------~~l~-~~~~q----~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~ 260 (355)
T 3tjz_B 199 LLYHVRKNDRL----AVSKMISKFTR---------HGLK-SPFAY----CMMIRVASRQLEDEDGSRDSPLFDFIESCLR 260 (355)
T ss_dssp HHHHHHTTCHH----HHHHHHHHHHS---------SCCS-CHHHH----HHHHHHHTCC-----------------CCCC
T ss_pred HHHHHHhhchH----HHHHHHHHHhc---------CCCc-ChHHH----HHHHHHHHHhccccchhhHHHHHHHHHHHHc
Confidence 99999876533 33444443320 0010 13422 2333333333332111234578888999999
Q ss_pred CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHH
Q 002400 334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKL 413 (927)
Q Consensus 334 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L 413 (927)
+.++.|...|++++-.+.. .+. .......+.+...+.+ +++.+|-.|...|..+....+ +.+..+ -..+
T Consensus 261 ~~~~aVvyEa~k~I~~l~~-~~~----~~~~~a~~~L~~fLss-~d~niryvaLr~L~~l~~~~P-~~v~~~----n~~i 329 (355)
T 3tjz_B 261 NKHEMVVYEAASAIVNLPG-CSA----KELAPAVSVLQLFCSS-PKAALRYAAVRTLNKVAMKHP-SAVTAC----NLDL 329 (355)
T ss_dssp CSSHHHHHHHHHHHTC----------------CCCTHHHHHHS-SSSSSHHHHHHCC-----------------------
T ss_pred CCChHHHHHHHHHHHhccC-CCH----HHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHCc-HHHHHH----HHHH
Confidence 9999999999999987654 111 2233344455555666 788999999988888877654 334333 3345
Q ss_pred HHHhcCCChhHHHHHHHHH
Q 002400 414 LVLLQNGKQMVQEGALTAL 432 (927)
Q Consensus 414 ~~~l~~~~~~v~~~a~~al 432 (927)
..++++++..+...|+.++
T Consensus 330 e~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 330 ENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------------------
T ss_pred HHHccCCcHhHHHHHHHHh
Confidence 5667788877766665544
No 93
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.42 E-value=0.00036 Score=83.10 Aligned_cols=724 Identities=10% Similarity=0.065 Sum_probs=350.8
Q ss_pred cCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcC----CChHHHHHHHHHHH--H
Q 002400 96 LAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVT----FNDKIQESALLILS--R 169 (927)
Q Consensus 96 l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s----~~~~~r~~al~~l~--~ 169 (927)
.++-++.-+ ..|++.-.+ .-..||+.+-.++..+.+. ++ +.++.++|.+++.++. .+....++|+.+|. .
T Consensus 127 ~t~l~~~ll-~dL~~Ls~S-~Y~~VR~~AQ~~L~~~~~~-~~-gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~ 202 (997)
T 1vsy_5 127 ASKLENLLL-VDIIQLATS-LYPDIYKPAQGTLVHCMKQ-LV-GSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKK 202 (997)
T ss_dssp CCSHHHHHH-HHHHHHHTS-SCHHHHHHHHHHHHHHHTT-BT-THHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHH
T ss_pred CChHHHHHH-HHHHHHhcC-chHHHHHHHHHHHHHHHHh-cc-cHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhh
Confidence 444444433 444443333 4889999999999888776 45 7788899999887743 45567788888775 3
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhH-HhhHHHHHHHHHHHHhcCChhHH
Q 002400 170 MSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERF-LDLLPLMMRTLTEALNKGNESSA 248 (927)
Q Consensus 170 l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~~p~ll~~l~~~l~~~~~~~~ 248 (927)
+...+... -.++..+++.+.++.....+.|+..+-.+...++ ..+..+...-.+ ...+ ..+..+|+..
T Consensus 203 ~~~~~~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~-~~~~~p~~~~~~~~~~~--------~~i~~~d~~i- 271 (997)
T 1vsy_5 203 IHRKLMTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIV-IGIKIPSSVCVISDQAF--------LPLAPPDGTI- 271 (997)
T ss_dssp HHHHGGGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHH-TSCCCCCSCCCCCGGGT--------GGGCCSCSST-
T ss_pred hhhHHhcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHH-hcccCchHHHHHHHHHH--------hccCCCcHHH-
Confidence 33222111 1256788999998877667777776666666676 544221100000 0010 0111112211
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcc--hhHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 002400 249 QEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPE--WQKHHAVLIALAQIAEGCSKVMIKNLDQVVS 326 (927)
Q Consensus 249 ~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~--~~~r~aal~al~~i~~~~~~~~~~~l~~l~~ 326 (927)
..+++......+.........+..+...++...+ ++.+ |+....++..+..+...... +.-++++.
T Consensus 272 ~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~~~---------~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~ 339 (997)
T 1vsy_5 272 NLQVEAVKLAKKKKREYYLSLLVDLQDKLLDKLD---------NEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVF 339 (997)
T ss_dssp TSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH---------SSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHH
Confidence 1222222221111112223333455544443332 2367 99999888775555533221 34457888
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHH-----HHHHHhccCCCCchHHHHHHH------------
Q 002400 327 MVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLL-----PALVGAMDDFQNPRVQAHAAS------------ 388 (927)
Q Consensus 327 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il-----~~ll~~l~~~~~~~v~~~a~~------------ 388 (927)
.+.+.+.|++|.+|..|..++..+...+.+.....+ ...++ |.-+....+ +.+.-...-..
T Consensus 340 ~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~yfi 418 (997)
T 1vsy_5 340 SIISQISTKHPEIIHLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDT-STTSFPKTFTEEMNNFDNPKYFI 418 (997)
T ss_dssp HHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEES-CSTTTHHHHHHHHSCCSSCCCBC
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCC-CCccHHHHHHHHHhcccCCccce
Confidence 999999999999999999999877765432110000 00000 000000000 00111111111
Q ss_pred ---------------------------------HHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 002400 389 ---------------------------------AVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 435 (927)
Q Consensus 389 ---------------------------------al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l 435 (927)
++..|.+... +.++..++..+.+- ++.+..-+..-+..+..+
T Consensus 419 d~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~----~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~l 493 (997)
T 1vsy_5 419 DLRAYVGWLCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLT----REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLV 493 (997)
T ss_dssp CSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCC----HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHH
T ss_pred eCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcC----HHHHHHHHHHHHhh-ccccCccccchHHHHHHH
Confidence 1111111111 12233333332210 111111122223333444
Q ss_pred HHHhhhhhH-HhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhC---cchhhhhHHHHHHHHHHHhccCCCCC
Q 002400 436 ADSSQGQFQ-KYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVG---KDKFRDDAKQVMEVLMSLQGSQMEAD 511 (927)
Q Consensus 436 ~~~~~~~~~-~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~ 511 (927)
......++. ..++.+.|.+..++.+ .+..-...|.|.++.+..... .+........+.+.+......+...+
T Consensus 494 f~l~~rn~~~~~l~~l~~~~e~L~~~----~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~e 569 (997)
T 1vsy_5 494 ILLISSGFCELNMSDLFELCESYYNK----DDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHD 569 (997)
T ss_dssp HHHHTTTTCCCCGGGHHHHHHHTCCS----SCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHhcccchhhHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCch
Confidence 432211111 2455566666664332 233334446666666654322 12233344455555555444222211
Q ss_pred CcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHccc--CC-CccccCCCCCCCCCCCcchhhhhccCCceeeechhh
Q 002400 512 DPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQL--KP-DVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSV 588 (927)
Q Consensus 512 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (927)
....-..|+.-+...... .=.+.+++.+.. .+ +.. ++..+..
T Consensus 570 --t~~~W~~~i~~~~~~~Dp-------rR~~~L~e~l~~~~~~l~~~------------~~ssf~~-------------- 614 (997)
T 1vsy_5 570 --AFEIWSTLAWWLPAVVDL-------RRSKTFFCHFINADGMFDRE------------SDAATHQ-------------- 614 (997)
T ss_dssp --HHHHHHHHHHHHHHHSCG-------GGCHHHHHHHTCCCCCCCCC------------SSCCCCC--------------
T ss_pred --hHHHHHHHHHHHhcCCCh-------hhhHHHHHHHHHhhcccCCC------------CCcHHHH--------------
Confidence 122222333333332221 122334443311 00 000 0000000
Q ss_pred HHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHH------------HHHHh--
Q 002400 589 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAK------------LAVEK-- 654 (927)
Q Consensus 589 ~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~------------~~~~~-- 654 (927)
...+.+|..+....+-.+.. .+.++..+. ++++ ..+||.....++..++.... .....
T Consensus 615 ----~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~-y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~ 686 (997)
T 1vsy_5 615 ----TSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHP-YDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPD 686 (997)
T ss_dssp ----CSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCS-CHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSS
T ss_pred ----HHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCC-hHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccc
Confidence 11234566666666655544 677777766 6664 69999999999988876531 00011
Q ss_pred --cCCCCCCHHHHHHHHHHHHHHHHHHHc---cCC----h--------HHHHHHHHHHHHHhhc----------------
Q 002400 655 --GQSQGRNESYVKQLTDYIIPALVEALH---KEP----E--------IDICASMLDALNESIQ---------------- 701 (927)
Q Consensus 655 --~~~~~~~~~~~~~~~~~il~~ll~~l~---~e~----d--------~~v~~~~l~~l~~~~~---------------- 701 (927)
|......+........ .+++.+. .+. . ......++.-+...+.
T Consensus 687 ~~~~~~~~~~~~~~~~i~----~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~ll 762 (997)
T 1vsy_5 687 GLGLPLKSVPEKVDAYIK----KQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVL 762 (997)
T ss_dssp SSCCCSSCCCHHHHHHHH----HHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTT
T ss_pred cccCccccCcchHHHHHH----HHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHH
Confidence 0011111122222222 2223232 110 0 0112233322222221
Q ss_pred -----CCCCC-h-hhHHH-HHHHHHHHHHHhhhhhhhhHHhHHHHHHHHcc-CCChhHHhhHhHHHHHHHhhcCCCc-HH
Q 002400 702 -----GKDKT-A-EERRI-AICIFDDVMEHCREAALKYYDTYLPFLLEACN-DKHPDVRQAAVYGIGVCAEFGGSVF-KP 771 (927)
Q Consensus 702 -----~~~~~-~-~~r~~-a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-d~~~~vr~~a~~~lg~l~~~~~~~~-~~ 771 (927)
+.+.. . +.... |..++..+.... .-.++++.++..+.+... ++++ +|..+...+..+.-+.--.+ ..
T Consensus 763 P~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~--~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 763 PFLIGLVKHKDVCALASLDPVRLYAGLGYMP--IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC--CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 11111 1 11111 222222221110 001133334434333333 4677 88888777766654321111 11
Q ss_pred HHHHHHHHHHHhhcCCCCCCchh-hhHHHHHHHHHHHHHhhc-CCCCCHhhHHHHHHhcCCC--CC---------cHHHH
Q 002400 772 LVGEALSRLDFVIRHPNALHSDN-VMAYDNAVSALGKICQFH-RDSIDAAQVVPAWLSCLPL--KG---------DLIEA 838 (927)
Q Consensus 772 ~~~~il~~L~~~l~~~~~~~~~~-~~~~~na~~al~~l~~~~-~~~~~~~~~l~~~l~~Lp~--~~---------d~~e~ 838 (927)
-...++..+..+|.|+ . .+||+.|..+|+-+++.. +.. ..+.++..+-+.+.. .. +...+
T Consensus 840 ~~~~i~~~v~~~L~D~------q~~EVRe~Aa~tLsgll~c~~~~~-~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~r 912 (997)
T 1vsy_5 840 EKNKILEFVVSNLYNE------QFVEVRVRAASILSDIVHNWKEEQ-PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKI 912 (997)
T ss_dssp HHHHTHHHHTTTTTCS------SCHHHHHHHHHHHHHHHHSCCSHH-HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHcCCchh-hHHHHHHHHHHHHhhcccccccccccchHHHHH
Confidence 2256778888888775 5 779999999999999765 311 234566666666522 01 11356
Q ss_pred HHHHHHHHHHHhccCCccc--CCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHH
Q 002400 839 KVVHAQLCSMVERSDGEIL--GPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQ 916 (927)
Q Consensus 839 ~~~~~~l~~l~~~~~~~~~--~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 916 (927)
-.+.-+|+.++... |... ++ .+|+++..++..... ++-++..+.+.+..++..+.+. |..--..+.++
T Consensus 913 H~aVLgL~AlV~a~-Py~vP~P~---w~P~~l~~La~~~~~-----~~~i~~tvk~tlseFkrTH~D~-W~~~k~~Ft~e 982 (997)
T 1vsy_5 913 HGNVLGLGAIISAF-PYVFPLPP---WIPKNLSNLSSWART-----SGMTGNAAKNTISEFKKVRADT-WKFDRASFNTE 982 (997)
T ss_dssp HHHHHHHHHHHTTC-SCCSSCCT---HHHHHHHHHHTTSSS-----CSSHHHHTHHHHHHHHHHTSTT-HHHHGGGCCSS
T ss_pred HHHHHHHHHHHhhC-CCCCCCCc---ccHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHhccchh-HHHHHHhcCHH
Confidence 67889999999776 4444 33 789998888877653 2338888999999999998876 98777777776
Q ss_pred HHHHHHH
Q 002400 917 QQLALQS 923 (927)
Q Consensus 917 ~~~~l~~ 923 (927)
+-..|..
T Consensus 983 qL~~l~~ 989 (997)
T 1vsy_5 983 ELEDLEG 989 (997)
T ss_dssp TTGGGSS
T ss_pred HHHHHhc
Confidence 6555443
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.38 E-value=1.4e-05 Score=74.41 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=151.9
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC
Q 002400 183 DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE 262 (927)
Q Consensus 183 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (927)
+..+..+...+.+.++.++..|+.++..++ ..+++......+..++|.++..+ .+.|+.++..|+.++..+.+..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~Leell-K~~~~~l~~~~~e~~Ld~iI~ll----k~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEIL-KRADSDLRMMVLERHLDVFINAL----SQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTC----CSTTHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHcCC
Confidence 446778888899999999999999999999 66544334455556666555544 5789999999999999999874
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHH
Q 002400 263 PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWA 342 (927)
Q Consensus 263 ~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 342 (927)
|- -...+..+...+. ..+.+++.-.++.+...+|.+-- ....+.++..+...+.+.+++|+.+
T Consensus 107 pL-~~~~y~Kl~~aL~----------dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~a 169 (265)
T 3b2a_A 107 PM-GSKTFLKAAKTLV----------SLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVA 169 (265)
T ss_dssp CB-CHHHHHHHHHHHH----------HHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred CC-CHHHHHHHHHHHH----------HHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHH
Confidence 31 1122334444443 34456777888888888887721 1235678888888889999999999
Q ss_pred HHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHh-cCCC
Q 002400 343 AINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLL-QNGK 421 (927)
Q Consensus 343 a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l-~~~~ 421 (927)
++.++-.++...+. ...+..++..+-..+++ .++.+++.|..++..+...--.+.+.+-+-.+....-.+. -.+.
T Consensus 170 gl~~L~eia~~S~D---~~i~~~I~~eI~elL~~-eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 170 GFCLFLNMLNSSAD---SGHLTLILDEIPSLLQN-DNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGA 245 (265)
T ss_dssp HHHHHHHHGGGCSS---CCCGGGTTTTHHHHHTC-SCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHhhcccCC---HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999875432 24677788888888888 8999999999999888754111112122222333322233 3456
Q ss_pred hhHHHHH
Q 002400 422 QMVQEGA 428 (927)
Q Consensus 422 ~~v~~~a 428 (927)
+.+|..|
T Consensus 246 ~~~~~ka 252 (265)
T 3b2a_A 246 PIIRLKA 252 (265)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 6666665
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.37 E-value=4.6e-06 Score=85.44 Aligned_cols=189 Identities=11% Similarity=0.147 Sum_probs=136.9
Q ss_pred HHHhcCChhHHHHHHHHHHHHHccCcHHHHH-----HHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhh
Q 002400 238 EALNKGNESSAQEALELLIELAATEPRFLRK-----QLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEG 312 (927)
Q Consensus 238 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~ 312 (927)
+-+.+.+|..+..+++-+..+....+..... .+..+. +.+...+.|.|..+...++.++..+++.
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~lkk~l~DsN~~v~~~al~~l~~~~~~ 85 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDP----------TLFAQYITDSNVVAQEQAIVALNSLIDA 85 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCT----------HHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHH----------HHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 4456789999999999888776543221110 011111 1233566789999999999999999876
Q ss_pred chH------HHHhhHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHH
Q 002400 313 CSK------VMIKNLDQVVSMVLN-SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAH 385 (927)
Q Consensus 313 ~~~------~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~ 385 (927)
+.. ....+...++|.++. ++.|..+.+|..+..++-.+++...+ ...+++.++..+.+ .+|.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~~~l~~-Knpkv~~~ 158 (278)
T 4ffb_C 86 FASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------ITQSVELVIPFFEK-KLPKLIAA 158 (278)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS------SHHHHHHHGGGGGC-SCHHHHHH
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhc-cCHHHHHH
Confidence 532 234556778887775 58999999999999999888765432 23466777888888 99999999
Q ss_pred HHHHHHHhHhcCCCccc--cCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhh
Q 002400 386 AASAVLNFSENCTPDIL--TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF 443 (927)
Q Consensus 386 a~~al~~l~~~~~~~~~--~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 443 (927)
++..|..+++..+...+ .+.++.++..+..++++.++.||..+..+++.+-..+|+.+
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 99999999887665433 34677788889999999999999999999999998888653
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.33 E-value=4.1e-05 Score=71.41 Aligned_cols=178 Identities=11% Similarity=0.170 Sum_probs=141.1
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHH-HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVM-IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLL 367 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~-~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il 367 (927)
+++.+.|..++..++.+|+.+....++.+ ...+.++++.++..+.+++.+|--.|..|++.+.+..+.. ..-+..+.
T Consensus 40 ~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~--~~~y~Kl~ 117 (265)
T 3b2a_A 40 ELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG--SKTFLKAA 117 (265)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC--HHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 56667899999999999999999875543 3567899999999999999999999999999999876543 35566788
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
..+...+.+ +++-++.+|+..++.+ + +....+.+++.+++++.+.+..++..++.++..++...++. ..+
T Consensus 118 ~aL~dlik~-~~~il~~eaae~Lgkl----k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~--~i~ 187 (265)
T 3b2a_A 118 KTLVSLLES-PDDMMRIETIDVLSKL----Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS--GHL 187 (265)
T ss_dssp HHHHHHTTS-CCHHHHHHHHHHHHHC----C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC--CCG
T ss_pred HHHHHHhcC-CCchHHHHHHHHhCcC----C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH--HHH
Confidence 888888887 9999999999999988 1 22346788999999999999999999999999998776542 234
Q ss_pred HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHH
Q 002400 448 DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGM 482 (927)
Q Consensus 448 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 482 (927)
+.++.-+...++. ++..++..|+..+..+..
T Consensus 188 ~~I~~eI~elL~~----eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 188 TLILDEIPSLLQN----DNEFIVELALDVLEKALS 218 (265)
T ss_dssp GGTTTTHHHHHTC----SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHc
Confidence 4555555555554 456788878877766654
No 97
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.32 E-value=1.4e-07 Score=84.15 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=89.8
Q ss_pred chhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 286 VFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 286 ~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
.+.+.+++++|.+|..|+.+|+.+... . ++.+...++|+++.||..|+++++.+.. ..
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~ 73 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ER 73 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HH
Confidence 344677889999999999999866431 1 4777888999999999999999998753 23
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 434 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~ 434 (927)
.++.|+..+.| +++.||..|+++|+.+.. +..++.|...+++.++.||..+..+|+.
T Consensus 74 a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLED-DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHH-CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 57778888888 899999999999998741 3456778888888899999999888764
No 98
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.15 E-value=0.00023 Score=84.86 Aligned_cols=716 Identities=11% Similarity=0.048 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhH---HHHHHHHHHhc--CCChhHHHHHHHHH-H-----hhcccCc
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDA---FALNLSRMLSS--SSLPECRAMSAILL-R-----KHLTRDD 87 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~---~~~~L~~il~~--~~~~~~R~~a~v~L-k-----~~i~~~~ 87 (927)
.+-+..+++...|.=+++|+.|+..|...-+..|+. +++.+++.|.. .....-|.-+|+.+ . +.+.++
T Consensus 132 ~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d- 210 (997)
T 1vsy_5 132 NLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTD- 210 (997)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGC-
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcC-
Confidence 344667777778889999999999999877766654 34555666654 12233334444332 1 122222
Q ss_pred cccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHH
Q 002400 88 STSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLIL 167 (927)
Q Consensus 88 ~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l 167 (927)
|..+ ..+-..|+++...+ .+.|++-+..+...+.....+...+..+-..+...+..++.. -..++...
T Consensus 211 -----~~~~-----~~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~-i~~~~~~~ 278 (997)
T 1vsy_5 211 -----YKDI-----GRLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGT-INLQVEAV 278 (997)
T ss_dssp -----HHHH-----HHHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSS-TTSHHHHH
T ss_pred -----hHHH-----HHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHH-HHHHHHHH
Confidence 5432 33445555554444 677777666666666654332222211111111122211111 11122222
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHhhhCC-CC--HHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCC
Q 002400 168 SRMSQFVSEVLIAHGDTLHEVFSKFLGS-NN--FDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGN 244 (927)
Q Consensus 168 ~~l~~~~~~~l~~~~~~l~~~l~~~l~~-~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~ 244 (927)
....+.--......+..+...+....++ .. ......++..+..+. ..++.+ +=|..++.+.+.+.++.
T Consensus 279 ~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~-~r~d~~--------~~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 279 KLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQ-SNLESK--------PDKRAVFSIISQISTKH 349 (997)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHT-CCSSCC--------CCHHHHHHHHGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH-hcCCCC--------CCHHHHHHHHHhhcCCC
Confidence 2222221111222233444444444422 24 566666666655655 333221 22334444444444556
Q ss_pred hhHHHHHHHHHHHHHccC-------------------cHHHH---HHHHHHHHHHHHHh---hccC-chh-h-h---hC-
Q 002400 245 ESSAQEALELLIELAATE-------------------PRFLR---KQLVDVVGSMLQVA---EAEA-VFP-G-F---LA- 292 (927)
Q Consensus 245 ~~~~~~a~~~l~~l~~~~-------------------~~~~~---~~l~~ll~~ll~~~---~~~~-~i~-~-~---l~- 292 (927)
+..+..++..+..+...- |..+. ..-+.......+-+ +++. |+. . . +.
T Consensus 350 p~~R~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~W 429 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCW 429 (997)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeee
Confidence 666666665554433210 00000 00000000011110 1111 110 0 0 00
Q ss_pred ------------CcchhHHHHH-HHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhH----hhhc
Q 002400 293 ------------APEWQKHHAV-LIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLS----TDLG 355 (927)
Q Consensus 293 ------------~~~~~~r~aa-l~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~----~~~~ 355 (927)
.-+|...+.. +..++.+. . ...+.+++..+.+. ++.+..-+..-+..+..+. .+++
T Consensus 430 p~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~---~---~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~ 502 (997)
T 1vsy_5 430 GRLMYVMSPKALKLNLRENELEVLKTAGHLL---T---REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFC 502 (997)
T ss_dssp CSEEEEECTTCCCCCCCHHHHHHHHHHHTTC---C---HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTC
T ss_pred CCceeEeCCCCCCCCCCHHHHHHHHHHHhhc---C---HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccc
Confidence 0022333322 23333222 2 25667777766543 2222222223333333333 3334
Q ss_pred hhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC---ccccCchHHHHHHHHHHhc-CCChhHHHHHHHH
Q 002400 356 PELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP---DILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTA 431 (927)
Q Consensus 356 ~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~---~~~~~~l~~l~~~L~~~l~-~~~~~v~~~a~~a 431 (927)
. ..++.+.+.+-....+ ++..-+..|+..+.-++.+... +.....-.-+.+.|...+. +-++.....=..+
T Consensus 503 ~----~~l~~l~~~~e~L~~~-~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~ 577 (997)
T 1vsy_5 503 E----LNMSDLFELCESYYNK-DDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTL 577 (997)
T ss_dssp C----CCGGGHHHHHHHTCCS-SCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHH
T ss_pred h----hhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 2 4567777777777777 7777788888999988876542 2222333445555666666 4555544443344
Q ss_pred HHHHHHHhhhhhHHhHHHHHHHHHHHHhc-----ccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhcc
Q 002400 432 LASVADSSQGQFQKYYDAVMPYLKAILVN-----ANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS 506 (927)
Q Consensus 432 l~~l~~~~~~~~~~~~~~i~~~L~~~l~~-----~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~ 506 (927)
+..+....... -.+.|.+.+.. ..+.+........+..+..+...+| -++.. ...++..++ + +.
T Consensus 578 i~~~~~~~Dpr-------R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~-wr~~~-~~~~l~~~~-l-~h 646 (997)
T 1vsy_5 578 AWWLPAVVDLR-------RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSME-FRAPD-VGKLFDELV-F-DH 646 (997)
T ss_dssp HHHHHHHSCGG-------GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHT-TSSCC-CHHHHHHCC-S-CC
T ss_pred HHHHhcCCChh-------hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhc-ccccc-HHHHHHHHH-h-CC
Confidence 44444332221 11222332211 0011111111112445555555555 34443 455555444 2 21
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCC-ccccCCCCCCCCCC----Ccchhhhhcc--CC
Q 002400 507 QMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPD-VIITSADSDVDIDD----EDESIQTITL--GD 579 (927)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~--~~ 579 (927)
.-..+|+.+-..+..++... ..|..+.+ ..+++.....++ ......+....-.+ --+..+.... .+
T Consensus 647 ---~y~~VRe~Ig~~L~~i~~~~---~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~ 719 (997)
T 1vsy_5 647 ---PYDQVRQAVAKLLTTLVQNQ---SNPSISDP-TTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVG 719 (997)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTS---CCCCBSCH-HHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSS
T ss_pred ---ChHHHHHHHHHHHHHHHHhh---cccCCCCH-HHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccc
Confidence 22458888888887777654 22333332 233333222100 00000000000000 0000000000 00
Q ss_pred cee--eechhhHHhHHHHHHHHHHHHHHhccc----ccccHHH-HHHHHhhhhcccCcHHHHHH-HHHHHHHHHHHHHHH
Q 002400 580 KRI--GIKTSVLEEKATACNMLCCYADELKEG----FFPWIDQ-VAPTLVPLLKFYFHEEVRKA-AVSAMPELLRSAKLA 651 (927)
Q Consensus 580 ~~~--~~~~~~~~~k~~a~~~l~~l~~~~~~~----~~~~~~~-~~~~l~~~l~~~~~~~vR~~-a~~~l~~l~~~~~~~ 651 (927)
..- ..++.. +..+-.++..+...++.. +.||+.. ++|.++.+.+..-+.++.+. |..++..+..
T Consensus 720 ~~~~~~~~s~y---~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~----- 791 (997)
T 1vsy_5 720 LNPQQFIKTDY---FYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY----- 791 (997)
T ss_dssp CCSTTTTTSHH---HHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS-----
T ss_pred cCccccchHHH---HHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc-----
Confidence 000 001111 111223344455555554 6677776 77777666554311133333 2233222210
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhh-h
Q 002400 652 VEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAAL-K 730 (927)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~ 730 (927)
.. +.....+.++..+.+... .+.+| .|..++..+-.+.-+.---+. .
T Consensus 792 -------~~---~~~~~~~~~l~~l~~~~~---------------------~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 792 -------MP---IRKNHVAAIVDYVCSSNV---------------------ALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp -------SC---CCHHHHHHHHHHSSCTTT---------------------TSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred -------CC---CCHHHHHHHHHHHHHHHh---------------------cCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 00 011222222222211111 24679 999888776555442211111 1
Q ss_pred hHHhHHHHHHHHccCCC-hhHHhhHhHHHHHHHhhc-CCCcHHHHHHHHHHHHHhhcCCCCC------CchhhhHHHHHH
Q 002400 731 YYDTYLPFLLEACNDKH-PDVRQAAVYGIGVCAEFG-GSVFKPLVGEALSRLDFVIRHPNAL------HSDNVMAYDNAV 802 (927)
Q Consensus 731 ~~~~ll~~l~~~l~d~~-~~vr~~a~~~lg~l~~~~-~~~~~~~~~~il~~L~~~l~~~~~~------~~~~~~~~~na~ 802 (927)
-...+...++..|.|+. .+||+.|+.+|+-+...+ . ......++..+...+...... .......+..++
T Consensus 840 ~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~---~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV 916 (997)
T 1vsy_5 840 EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE---EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV 916 (997)
T ss_dssp HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS---HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc---hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence 23577788888899999 999999999999998775 3 111223444444333220000 011224667789
Q ss_pred HHHHHHHhhcCCCCCHhhHHHHHHhcC
Q 002400 803 SALGKICQFHRDSIDAAQVVPAWLSCL 829 (927)
Q Consensus 803 ~al~~l~~~~~~~~~~~~~l~~~l~~L 829 (927)
-+||-++...|=.+|+|.++|..+..|
T Consensus 917 LgL~AlV~a~Py~vP~P~w~P~~l~~L 943 (997)
T 1vsy_5 917 LGLGAIISAFPYVFPLPPWIPKNLSNL 943 (997)
T ss_dssp HHHHHHHTTCSCCSSCCTHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCCcccHHHHHHH
Confidence 999999999999988888888776655
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.15 E-value=1.9e-05 Score=81.89 Aligned_cols=303 Identities=14% Similarity=0.140 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHhcc-CCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCH
Q 002400 120 IIKKICDAVSELAASV-LPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNF 198 (927)
Q Consensus 120 vr~~~~~~i~~ia~~~-~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~ 198 (927)
.|..+..++..+...+ +|..+...+++.++.++++++...|+.++..+..+.+...+. + -+.+.+.+-++++++
T Consensus 44 c~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~----i-Lv~Nsl~kDl~~~N~ 118 (355)
T 3tjz_B 44 CAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV----I-IVTSSLTKDMTGKED 118 (355)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG----G-GGHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH----H-HHHHHHHhhcCCCcH
Confidence 3445666666555431 121134567788888999999999999999998887762221 1 456778888899999
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Q 002400 199 DLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSML 278 (927)
Q Consensus 199 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll 278 (927)
-+|-.|+++++.+. . .++++.+...+.+++.+.++.+++.|+-+...+....|..++..++ .+
T Consensus 119 ~iR~lALRtL~~I~-~-----------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~----~l- 181 (355)
T 3tjz_B 119 SYRGPAVRALCQIT-D-----------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN----EA- 181 (355)
T ss_dssp HHHHHHHHHHHHHC-C-----------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH----HH-
T ss_pred hHHHHHHHHHhcCC-C-----------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH----HH-
Confidence 99999999999998 2 2356667777888888999999999998888888777776554332 22
Q ss_pred HHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhHhhhchh
Q 002400 279 QVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS-FQDPHPRVRWAAINAIGQLSTDLGPE 357 (927)
Q Consensus 279 ~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~ 357 (927)
.+.+.+.+.-+...|+.++..+.+.-. ..+..+++.+..+ +. +|..+..-+..++.++. .+
T Consensus 182 ---------~~ll~d~n~~V~~~Al~lL~ei~~~d~----~a~~kLv~~l~~~~l~--~~~~q~~llr~l~~~~~---~d 243 (355)
T 3tjz_B 182 ---------QEAASSDNIMVQYHALGLLYHVRKNDR----LAVSKMISKFTRHGLK--SPFAYCMMIRVASRQLE---DE 243 (355)
T ss_dssp ---------HHHTTCSSHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHSSCCS--CHHHHHHHHHHHTCC-------
T ss_pred ---------HHHhcCCCccHHHHHHHHHHHHHhhch----HHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHhcc---cc
Confidence 255667788888888888888776432 2344555555442 22 23332222333323222 11
Q ss_pred HHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 358 LQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 358 ~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
. ......+++.+...+.+ .++.|.-.|+.++..+-. .+... +......+..++.+.++.+|-.++..|..++.
T Consensus 244 ~-~~~~~~~~~~l~~~L~~-~~~aVvyEa~k~I~~l~~-~~~~~----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 244 D-GSRDSPLFDFIESCLRN-KHEMVVYEAASAIVNLPG-CSAKE----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp --------------CCCCC-SSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred c-hhhHHHHHHHHHHHHcC-CChHHHHHHHHHHHhccC-CCHHH----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 0 12345677888888888 888998888888776643 22221 22334445556778888999999999988887
Q ss_pred HhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHH
Q 002400 438 SSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECI 477 (927)
Q Consensus 438 ~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 477 (927)
..+..+... -.-+...+.+ .++.++.-|+.++
T Consensus 317 ~~P~~v~~~----n~~ie~li~d----~n~sI~t~Aittl 348 (355)
T 3tjz_B 317 KHPSAVTAC----NLDLENLVTD----ANRSIATLAITTL 348 (355)
T ss_dssp ----------------------------------------
T ss_pred HCcHHHHHH----HHHHHHHccC----CcHhHHHHHHHHh
Confidence 665543332 2223333332 3455555554443
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.10 E-value=0.022 Score=62.85 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=131.1
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH---HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCC
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG---DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~---~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
++-++.|+.++++.+..+|..++.+|..++...++.....+ +.-++.+...|.|+...+|..|+-.+..+. .. +
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt-~~--n 197 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT-RS--N 197 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHH-TT--C
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHh-cC--C
Confidence 56789999999999999999999999999998887655543 356888999999999999999999999998 42 1
Q ss_pred ch--hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCc---HHHHH--HHHHHHH----------------
Q 002400 219 LG--EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEP---RFLRK--QLVDVVG---------------- 275 (927)
Q Consensus 219 ~~--~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~--~l~~ll~---------------- 275 (927)
.+ ..-.|..-++.+++++..-=..+...+...|+.++..+....+ ++|+. +++.+.+
T Consensus 198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~ 277 (651)
T 3grl_A 198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV 277 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence 11 1223444566666666531001123455677777777775432 22321 1111111
Q ss_pred -H------HHHHh-h--cc-----------------CchhhhhCCc--chhHHHHHHHHHHHHhhhchHH---HHh----
Q 002400 276 -S------MLQVA-E--AE-----------------AVFPGFLAAP--EWQKHHAVLIALAQIAEGCSKV---MIK---- 319 (927)
Q Consensus 276 -~------ll~~~-~--~~-----------------~~i~~~l~~~--~~~~r~aal~al~~i~~~~~~~---~~~---- 319 (927)
. +++.+ . ++ +.+-+++..+ ....|..|+.+++.+..+.+.. +..
T Consensus 278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp 357 (651)
T 3grl_A 278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP 357 (651)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence 0 11111 0 00 1111222222 4578888999999999887652 111
Q ss_pred ---hHHHHHHHHHhccCCC-CHHHHHHHHHHHHHhHhh
Q 002400 320 ---NLDQVVSMVLNSFQDP-HPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 320 ---~l~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~ 353 (927)
..+.++..+...+++. ...+|.+|+.|+..+...
T Consensus 358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 1133445455556554 467899999999988754
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.05 E-value=0.017 Score=66.99 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=52.8
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 144 LIPFIFQCLVTFNDKIQESALLILSRMSQFVSE-VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 144 ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~-~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
++|.+ +.++|+++..|..|+.+|..+++.-.. .+..+-+.+.+++...+.|++.+||.+|..+|.++.
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 55644 568999999999999999999975332 222223445567778899999999999999999988
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.92 E-value=4.8e-05 Score=80.13 Aligned_cols=233 Identities=11% Similarity=0.093 Sum_probs=140.3
Q ss_pred CCcc-chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC
Q 002400 139 GDWP-ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP 217 (927)
Q Consensus 139 ~~w~-~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 217 (927)
..|| ++...|..-+-+++.++|++|...|.++....+...... ...+. ..|+++++.++-..|.
T Consensus 169 ~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~------------~~~N~---DLAvRLLCVLALDRFG 233 (800)
T 3oc3_A 169 IENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVDS---KLFSKIYEILVTDKFN 233 (800)
T ss_dssp CCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC------------CCCCT---THHHHHHHHHHHBCCB
T ss_pred CCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee------------ccccH---HHHHHHHHHHHhcccc
Confidence 4665 477788888889999999999999999988754321111 11111 4455555555522221
Q ss_pred CchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchh
Q 002400 218 SLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQ 297 (927)
Q Consensus 218 ~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~ 297 (927)
+++.. .---.++..+...+..+ ..-+.- -.++..|+ ..+..+.|.
T Consensus 234 ---------DYVSD----------qVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV----------~~l~~~~WE 278 (800)
T 3oc3_A 234 ---------DFVDD----------RTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLV----------GFLDSGDWQ 278 (800)
T ss_dssp ---------BCSSS----------SCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHT----------TGGGCSCHH
T ss_pred ---------ccccC----------eeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHH----------hhcCCCCee
Confidence 11000 00001222222222222 221111 01222221 223467899
Q ss_pred HHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCC
Q 002400 298 KHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDF 377 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 377 (927)
+|++++..|..+.+-. . .++.+++.++.+|+|++..||..|+.+|.-++ .+ ..++.++..+..+|.+.
T Consensus 279 VRHGGLLGLKYL~DLL----~-~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p----~~l~~LL~iLWd~L~~L 346 (800)
T 3oc3_A 279 VQFSGLIALGYLKEFV----E-DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---IT----DSLDLVLEKCWKNIESE 346 (800)
T ss_dssp HHHHHHHHHHHTGGGC----C-CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CS----STHHHHHHHHHHHHHTC
T ss_pred ehhhhHHHHHHHHHHH----H-HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---ch----hhHHHHHHHHHHHhhhh
Confidence 9999999999883222 1 28999999999999999999999999998887 22 33455566665555542
Q ss_pred C-CchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400 378 Q-NPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 436 (927)
Q Consensus 378 ~-~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~ 436 (927)
. -..........|..++..-...... +.+++.|.+.+.+.-..||.+++.++..+.
T Consensus 347 DDLSASTgSVMdLLAkL~s~p~~a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 347 ELISVSKTSNLSLLTKIYRENPELSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CSCCTTHHHHHHHHHHHHHHCTTCCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred cccchhhHHHHHHHHHHHcCCcccccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 1 1223345556777776543321122 378899999999999999999999987776
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.83 E-value=1.6e-05 Score=70.68 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=67.2
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+.++|++|.+|..|+.+|+.+.. +..++.+...+.|+++.||..|+++|+.+.. ...++
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~ 107 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRA 107 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHH
Confidence 55668899999999999988753 2356677777789999999999999998752 24678
Q ss_pred HHHHhccCCCCchHHHHHHHHHHH
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLN 392 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~ 392 (927)
.|...+.| +++.||..|+.+|..
T Consensus 108 ~L~~~l~d-~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 108 AMEKLAET-GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHTTS-CCTHHHHHHHHHGGG
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHh
Confidence 88888888 899999999998764
No 104
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.73 E-value=9.9e-05 Score=71.77 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=119.7
Q ss_pred HHHHHhccCCCCH--HHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccc
Q 002400 325 VSMVLNSFQDPHP--RVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDIL 402 (927)
Q Consensus 325 ~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~ 402 (927)
+|.+++.|+++++ .++..|++++..++..-.+....-.....+|.|++.|.+ +++.+|..|+++|.+++........
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5677788887777 899889999998886432222122345678999999999 8999999999999999864321100
Q ss_pred cCchHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc---cc---------CcchhhH
Q 002400 403 TPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVN---AN---------DKSNRML 469 (927)
Q Consensus 403 ~~~l~~l~~~L~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~---~~---------~~~~~~l 469 (927)
.=.-...++.|+.+|. +.+..+++.+..+|.+++..-... ......-+|.|.+.+.. .. ...+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 0011246778888887 568899999999999997533211 12233445666543210 01 0124467
Q ss_pred HHHHHHHHHHHHHhh--CcchhhhhHHHHHHHHHHHhccC---CCCCCcchHHHHHHHHHHH
Q 002400 470 RAKSMECISLVGMAV--GKDKFRDDAKQVMEVLMSLQGSQ---MEADDPTTSYMLQAWARLC 526 (927)
Q Consensus 470 r~~a~~~l~~l~~~~--~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~ 526 (927)
+..|..|+..++..- ++..+.. ...+++.++.+.... -..++...+.+..++.+|+
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 777888888876531 1111211 122444444432221 1223445566666666654
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.72 E-value=0.00077 Score=65.51 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=108.2
Q ss_pred hhhCCcch--hHHHHHHHHHHHHhhhchHHHHhhH-HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh
Q 002400 289 GFLAAPEW--QKHHAVLIALAQIAEGCSKVMIKNL-DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR 365 (927)
Q Consensus 289 ~~l~~~~~--~~r~aal~al~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 365 (927)
+++++++. ..+..|..++..++.+.++.-.... ...+|.++..|.++++.+|..|+++|..++..-......-.-..
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G 94 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELN 94 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 56667666 7777888899888876543221211 13579999999999999999999999999864222111223456
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhc----------------CCChhHHHHHH
Q 002400 366 LLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQ----------------NGKQMVQEGAL 429 (927)
Q Consensus 366 il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~----------------~~~~~v~~~a~ 429 (927)
.+|.|++.|.+.++..+++.|+.+|.++....... ......-++.|...+. ..+..+++.+.
T Consensus 95 aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~ 172 (233)
T 3tt9_A 95 GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT 172 (233)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHH
Confidence 89999999974268899999999999997432110 1122233444443221 12458999999
Q ss_pred HHHHHHHHHhh---hhhHHhHHHHHHHHHHHHhc
Q 002400 430 TALASVADSSQ---GQFQKYYDAVMPYLKAILVN 460 (927)
Q Consensus 430 ~al~~l~~~~~---~~~~~~~~~i~~~L~~~l~~ 460 (927)
.+|.+++.... ..+.. .+.+++.|...++.
T Consensus 173 ~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 173 GCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHh
Confidence 99999975332 22322 12355555555544
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.51 E-value=0.037 Score=61.08 Aligned_cols=322 Identities=12% Similarity=0.106 Sum_probs=185.2
Q ss_pred cchHHHHHHHhcC-CChHHHHHHHHHHHHhhhhhHHHHHHh-HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 142 PELIPFIFQCLVT-FNDKIQESALLILSRMSQFVSEVLIAH-GDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 142 ~~ll~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~l~~~-~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
.+-++.|...+++ .-..-|+.|+..|..+...++.....+ ++.++..+.+- ..+.++-..++++|..++ ..-+.+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~-~~~~~~ 96 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD--RSDSEIIGYALDTLYNII-SNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHH-CCC---
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc--cccHHHHHHHHHHHHHHh-CCCCcc
Confidence 4567777776654 456789999999999988876654322 44444444331 137788888999998877 432211
Q ss_pred hh-----------HHhHHhhH---HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHH---HHHHHHHHHhh
Q 002400 220 GE-----------KERFLDLL---PLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLV---DVVGSMLQVAE 282 (927)
Q Consensus 220 ~~-----------~~~~~~~~---p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~---~ll~~ll~~~~ 282 (927)
.. ...+.+.+ +.-+..+..++++.+..++..++.++..++...+...+.++- .-++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv---- 172 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM---- 172 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH----
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH----
Confidence 00 01121111 333556666677889999999999999999887775555443 3455555
Q ss_pred ccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHH-----HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchh
Q 002400 283 AEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVM-----IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPE 357 (927)
Q Consensus 283 ~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~-----~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 357 (927)
..++|+.-..|..++..|..+..+..+.- ..-++.++..+...=.-....|..-++.++..+...- +.
T Consensus 173 ------~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N-~s 245 (651)
T 3grl_A 173 ------DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN-NS 245 (651)
T ss_dssp ------GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC-HH
T ss_pred ------HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC-HH
Confidence 56667788899999999999999877621 1224444444332111124477788888888888752 22
Q ss_pred HHHHhHh-hHHHHHHHhccCCCC----ch--HHHH---HHHHHHHhHhcCCCc-cccC-----chHHHHHHHHHHhcCC-
Q 002400 358 LQTQFHH-RLLPALVGAMDDFQN----PR--VQAH---AASAVLNFSENCTPD-ILTP-----YLDGIVSKLLVLLQNG- 420 (927)
Q Consensus 358 ~~~~~~~-~il~~ll~~l~~~~~----~~--v~~~---a~~al~~l~~~~~~~-~~~~-----~l~~l~~~L~~~l~~~- 420 (927)
.+.-+.+ ..+|.|...+.. +. |. .... +..++..++....+. .... +-..++..+++++-..
T Consensus 246 NQ~~FrEt~~i~~L~~LL~~-~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~ 324 (651)
T 3grl_A 246 NQNFFKEGSYIQRMKPWFEV-GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATG 324 (651)
T ss_dssp HHHHHHHTTCGGGGGGGGCC-CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred HHHHHHHcCCHHHHHHHhCC-CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 2222221 356666666653 21 11 1122 334444444432210 0000 1123556666665544
Q ss_pred -ChhHHHHHHHHHHHHHHHhhh---hhHHhH-------HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHH
Q 002400 421 -KQMVQEGALTALASVADSSQG---QFQKYY-------DAVMPYLKAILVNANDKSNRMLRAKSMECISLVG 481 (927)
Q Consensus 421 -~~~v~~~a~~al~~l~~~~~~---~~~~~~-------~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~ 481 (927)
+..++..++.+++.++..... .|...- +.++..|...+ .+.....+|..|..|+..+.
T Consensus 325 ~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~---~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 325 VPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMV---NERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHT---CTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHh---cccccHHHHHHHHHHHHHHH
Confidence 578999999999988754432 232211 22344343332 23345678888888887665
No 107
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.40 E-value=0.19 Score=52.98 Aligned_cols=292 Identities=11% Similarity=0.107 Sum_probs=160.8
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS 195 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~ 195 (927)
++...++-+++.|....++ +| .--.+.+..++.++.+.+..+|..|+.-|..+|.. .++..+..+|.+.|+.
T Consensus 40 g~~k~K~LaaQ~I~kffk~-FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKH-FP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQT 111 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGG-CG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHhh-Ch-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhc
Confidence 4688899999999998875 34 34456788888899999999999999999999976 3688899999999998
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC-cHHHHHHHHHH-
Q 002400 196 NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE-PRFLRKQLVDV- 273 (927)
Q Consensus 196 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~l~~l- 273 (927)
.++.-+...-++|..++ ..- ....+.. ++.. +..+++.++..++.++..-...- +..+..-+...
T Consensus 112 dd~~E~~~V~~sL~sll-k~D----pk~tl~~----lf~~----i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 112 DDSAEFNLVNNALLSIF-KMD----AKGTLGG----LFSQ----ILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp CCHHHHHHHHHHHHHHH-HHC----HHHHHHH----HHHH----HHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-hcC----hHHHHHH----HHHH----HcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 88777777777888887 321 1122222 2222 22357888888999887665431 12222212211
Q ss_pred HHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhc--c----CCCCHHHHHHHHHHH
Q 002400 274 VGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNS--F----QDPHPRVRWAAINAI 347 (927)
Q Consensus 274 l~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~--l----~d~~~~vr~~a~~~l 347 (927)
+..+. +.+++-.-..-...+..|+.+--.-. . ....++++.+... | .-.++..-..-..|+
T Consensus 179 ~~~ik----------K~L~DVT~~EF~L~m~lL~~lkl~~t--~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~ 245 (507)
T 3u0r_A 179 LTESK----------KVLEDVTGEEFVLFMKILSGLKSLQT--V-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCT 245 (507)
T ss_dssp HHHHH----------HHTTSCCHHHHHHHHHHHHTSGGGSS--H-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHH
T ss_pred HHHHH----------HHhccccHHHHHHHHHHHHhcccccC--c-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHH
Confidence 11121 12222111111111222211111100 0 1123444444432 2 212443333334444
Q ss_pred HHhHhhhchhH-HHHhHhhHHHHHHHhccCCCC----chHHHHHHHHHHHhHhcCC-CccccCchHHHHHHHHHHhcCCC
Q 002400 348 GQLSTDLGPEL-QTQFHHRLLPALVGAMDDFQN----PRVQAHAASAVLNFSENCT-PDILTPYLDGIVSKLLVLLQNGK 421 (927)
Q Consensus 348 ~~~~~~~~~~~-~~~~~~~il~~ll~~l~~~~~----~~v~~~a~~al~~l~~~~~-~~~~~~~l~~l~~~L~~~l~~~~ 421 (927)
.+-.-.+.... ...++.-++..++..+++-+. ...+-....++..++..++ .+.....++.+.+.|...+-...
T Consensus 246 ~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p 325 (507)
T 3u0r_A 246 RQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPP 325 (507)
T ss_dssp HHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCc
Confidence 43333332211 024555555555555554222 2477888899999988887 34333466666666665543222
Q ss_pred -----------------hhHHHHHHHHHHHHHHHhhh
Q 002400 422 -----------------QMVQEGALTALASVADSSQG 441 (927)
Q Consensus 422 -----------------~~v~~~a~~al~~l~~~~~~ 441 (927)
...-+..+-++..++...++
T Consensus 326 ~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~ 362 (507)
T 3u0r_A 326 EEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPD 362 (507)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHTTCTH
T ss_pred ccccccccccccCcccchhHHHHHHHHHHHHhhhChh
Confidence 12235556666666655544
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.07 E-value=0.39 Score=50.56 Aligned_cols=285 Identities=12% Similarity=0.101 Sum_probs=155.6
Q ss_pred HHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002400 178 LIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIE 257 (927)
Q Consensus 178 l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~ 257 (927)
+..|.+....++ .+.. ++...+.-|...+..++ ..| .++-..-++.+..+.+++|..++..|+..+..
T Consensus 24 ~~~~~~~y~~Il-~~~k-g~~k~K~LaaQ~I~kff-k~F---------P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~ 91 (507)
T 3u0r_A 24 VGQHKDAYQVIL-DGVK-GGTKEKRLAAQFIPKFF-KHF---------PELADSAINAQLDLCEDEDVSIRRQAIKELPQ 91 (507)
T ss_dssp GGGGHHHHHHHH-HGGG-SCHHHHHHHHHHHHHHG-GGC---------GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGG
T ss_pred ccccHHHHHHHH-HhcC-CCHHHHHHHHHHHHHHH-hhC---------hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHH
Confidence 334454443333 3333 37889999999999998 655 34555667777788888899999999999988
Q ss_pred HHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCH
Q 002400 258 LAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHP 337 (927)
Q Consensus 258 l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 337 (927)
+|.. .++..+...+. ++++.++...+.+.-.+|-.+...-+. ..+..++..+.. .+.
T Consensus 92 ~ck~------~~i~kiaDvL~----------QlLqtdd~~E~~~V~~sL~sllk~Dpk---~tl~~lf~~i~~----~~e 148 (507)
T 3u0r_A 92 FATG------ENLPRVADILT----------QLLQTDDSAEFNLVNNALLSIFKMDAK---GTLGGLFSQILQ----GED 148 (507)
T ss_dssp GCCT------TCHHHHHHHHH----------HHTTCCCHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHH----SCH
T ss_pred Hhhh------hhhhhHHHHHH----------HHHhccchHHHHHHHHHHHHHHhcChH---HHHHHHHHHHcc----cch
Confidence 8876 23556666555 555667788888888888888776554 445555666655 357
Q ss_pred HHHHHHHHHHHHhHhhhchhHHHH-hHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHH
Q 002400 338 RVRWAAINAIGQLSTDLGPELQTQ-FHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVL 416 (927)
Q Consensus 338 ~vr~~a~~~l~~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 416 (927)
.+|..++..|..-...++++.... .-.-+...+.+.+.| -. ..=...+-.+.....-..-.+..+.+++.+..-
T Consensus 149 ~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D-VT----~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQ 223 (507)
T 3u0r_A 149 IVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED-VT----GEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQ 223 (507)
T ss_dssp HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS-CC----HHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc-cc----HHHHHHHHHHHHhcccccCchHHHHHHHHHHHH
Confidence 899998888866555444433221 222233444445554 11 111112222222221000012233444444443
Q ss_pred hc------CCChhHHHHHHHHHHHHHHHhhh--hhHHhHHHHHHHHHHHHhcccCc-chhhHHHHHHHHHHHHHHhhC-c
Q 002400 417 LQ------NGKQMVQEGALTALASVADSSQG--QFQKYYDAVMPYLKAILVNANDK-SNRMLRAKSMECISLVGMAVG-K 486 (927)
Q Consensus 417 l~------~~~~~v~~~a~~al~~l~~~~~~--~~~~~~~~i~~~L~~~l~~~~~~-~~~~lr~~a~~~l~~l~~~~~-~ 486 (927)
.. ..+...-+..+.|+....-.... .-.+|+.-+...+...|..-... +....+...+.+++.++...| .
T Consensus 224 a~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~ 303 (507)
T 3u0r_A 224 ADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDM 303 (507)
T ss_dssp HTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCC
T ss_pred HhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCcc
Confidence 21 12333333333443332211111 11233333333333333332221 111245556888888888888 4
Q ss_pred chhhhhHHHHHHHHHH
Q 002400 487 DKFRDDAKQVMEVLMS 502 (927)
Q Consensus 487 ~~~~~~~~~i~~~l~~ 502 (927)
+.....++.+++.+..
T Consensus 304 e~a~~~l~~iy~~L~~ 319 (507)
T 3u0r_A 304 EKLETNLRKLFDKLLE 319 (507)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHH
Confidence 5556677777777765
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.04 E-value=0.007 Score=57.38 Aligned_cols=134 Identities=10% Similarity=0.129 Sum_probs=101.2
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLN-SFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLL 367 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il 367 (927)
.+.+++...+|..|+..|+.. . ....+++.+.. .-.|+++.||+.++.+++.++...+++ ..+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------KAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------TTH
T ss_pred HHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------HHH
Confidence 555677789999999998877 2 12567777776 567999999999999999988633332 356
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
+.+..-..| +++.||..|...+.-++.. . ........+++.+-.+..+++..||..+-.+|..+++.-++-
T Consensus 142 ~~~~~W~~d-~n~~VRR~Ase~~rpW~~~-~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 142 PIIDEWLKS-SNLHTRRAATEGLRIWTNR-P--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp HHHHHHHHC-SSHHHHHHHHHHTCSGGGS-T--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHhhHHHhcc-c--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 777788888 9999999998876555543 2 123456677888888888999999999988888888666553
No 110
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.78 E-value=0.81 Score=53.10 Aligned_cols=301 Identities=10% Similarity=0.064 Sum_probs=170.0
Q ss_pred HhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC--CCCchHHHHHHHHHHHhHh
Q 002400 318 IKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD--FQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 318 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~--~~~~~v~~~a~~al~~l~~ 395 (927)
......+.|.+..++...+..+...+..++..++.--+.+. ...++.++..+...|.. -.++.=..+++.+|..++.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~-~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNA-YLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcc-ceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 34455677888889999999999999999999987433111 12444555555555543 2334444566677777665
Q ss_pred cCC-CccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh----------------------------------
Q 002400 396 NCT-PDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ---------------------------------- 440 (927)
Q Consensus 396 ~~~-~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~---------------------------------- 440 (927)
.+- ....++|+..++..++..++..++.--..++..+..++..++
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESS 492 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCS
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccc
Confidence 432 123467888899988888887766544556666666654221
Q ss_pred ------------------hhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH
Q 002400 441 ------------------GQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 502 (927)
Q Consensus 441 ------------------~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 502 (927)
..|..++..++..+..++++.. +. .+-.....++..+...+.++.|...++.+.+.+..
T Consensus 493 ~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~--Ee-~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~ 569 (799)
T 1vsy_4 493 KTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL--ED-SLVTKINQTTMILQESMDDKIFNYFASLLNRNFWS 569 (799)
T ss_dssp SSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC--CT-HHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHS
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--hH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1244555666666666665522 22 23233455666677777777777777777766554
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCcee
Q 002400 503 LQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRI 582 (927)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (927)
.... ...+.+..-+.--+..+++.-++.+..++|.+...+...+....+..- ...+....|.
T Consensus 570 n~~~--~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~r----s~~e~~~~D~------------ 631 (799)
T 1vsy_4 570 NDSF--KEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVR----STSEIQQRDV------------ 631 (799)
T ss_dssp CSCC--CSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSC----CSSSCCTTTH------------
T ss_pred hhhh--hHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccc----cccccCcchH------------
Confidence 2111 111222111110135556665554444444444444422211100000 0000000111
Q ss_pred eechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 002400 583 GIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648 (927)
Q Consensus 583 ~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~ 648 (927)
+..--+.+|+.++...|..+.+|.+++++.+..++....+..+-+.+...+..++...
T Consensus 632 --------~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 632 --------KLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp --------HHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 1123456788888888999999999999887776654445555566777777776654
No 111
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.56 E-value=1.7 Score=50.33 Aligned_cols=269 Identities=9% Similarity=0.078 Sum_probs=142.4
Q ss_pred HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 002400 180 AHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNK---GNESSAQEALELLI 256 (927)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~---~~~~~~~~a~~~l~ 256 (927)
..++.+.|.+..++.+.+..+...+..++..++ ..-|. ...-++|.+++.+...++. ........++..+.
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La-~l~P~-----~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLL-ELDPS-----NAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HTCCT-----THHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHH-hcCCC-----ccceehHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 356788899999999999999999999999988 32211 1234789999988888876 45666667777776
Q ss_pred HHHcc--CcHHHHHHHHHHHHHHHHHhh-cc--------Cchhhhh---------CC-cc---------hh---------
Q 002400 257 ELAAT--EPRFLRKQLVDVVGSMLQVAE-AE--------AVFPGFL---------AA-PE---------WQ--------- 297 (927)
Q Consensus 257 ~l~~~--~~~~~~~~l~~ll~~ll~~~~-~~--------~~i~~~l---------~~-~~---------~~--------- 297 (927)
.++.. ..+.++.|+..++..++.-.+ |+ .++.... .. +. |-
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~ 488 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKC 488 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcc
Confidence 66532 112345566666665553221 11 0000000 00 00 00
Q ss_pred ---------HHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 298 ---------KHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 298 ---------~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
.++---.++.......++.+..++++++..+-. +.+..+-..-..++..+...+++++....+..+..
T Consensus 489 ~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen---~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~ 565 (799)
T 1vsy_4 489 GESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDV---DLEDSLVTKINQTTMILQESMDDKIFNYFASLLNR 565 (799)
T ss_dssp TCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTS---CCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 000001122222223333334444444444333 23333434455566667777776654444545544
Q ss_pred HHHHhccCCCC-chHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCC-----C-h------hHHHHHHHHHHHH
Q 002400 369 ALVGAMDDFQN-PRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNG-----K-Q------MVQEGALTALASV 435 (927)
Q Consensus 369 ~ll~~l~~~~~-~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~-----~-~------~v~~~a~~al~~l 435 (927)
.+...... .. ..+-.-+...+..++...+. .++.+++.+...+...++++ + . .--.--+..++.+
T Consensus 566 fv~~n~~~-~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~ 643 (799)
T 1vsy_4 566 NFWSNDSF-KEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDV 643 (799)
T ss_dssp HHHSCSCC-CSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHhhhh-hHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHH
Confidence 44444433 21 11111010013344444443 45556666666665444333 1 1 1122234677777
Q ss_pred HHHhhhhhHHhHHHHHHHHHHHHh
Q 002400 436 ADSSQGQFQKYYDAVMPYLKAILV 459 (927)
Q Consensus 436 ~~~~~~~~~~~~~~i~~~L~~~l~ 459 (927)
+...|..+.+|-+.++..+...+.
T Consensus 644 v~~~g~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 644 LRNCHESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp HTTTGGGGGTTHHHHHHHHHHHHH
T ss_pred HhcCcHHHHccHHHHHHHHHHHHH
Confidence 777888888999999988887764
No 112
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=96.38 E-value=0.9 Score=45.61 Aligned_cols=169 Identities=7% Similarity=0.180 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHHccCcHHHHHHHHHHHHHH
Q 002400 199 DLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSA-QEALELLIELAATEPRFLRKQLVDVVGSM 277 (927)
Q Consensus 199 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~-~~a~~~l~~l~~~~~~~~~~~l~~ll~~l 277 (927)
.|+...++.+..++ ...++. ......++|++++.+..--....++.+ .+.+.++..++..-...+.+.++.++..+
T Consensus 44 ~vKkeiLkLiet~i-~~~~d~--~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWV-SRSNDP--QMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 120 (321)
T ss_dssp HHHHHHHHHHHHHH-TTCSCH--HHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCCH--HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46777788888888 543322 234567888888754332222222211 23455555555443344455555555544
Q ss_pred HHHhhccCchhhhhC---CcchhHHHHHHHHHHHHhhhchHHHH----hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002400 278 LQVAEAEAVFPGFLA---APEWQKHHAVLIALAQIAEGCSKVMI----KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQL 350 (927)
Q Consensus 278 l~~~~~~~~i~~~l~---~~~~~~r~aal~al~~i~~~~~~~~~----~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 350 (927)
.+.. -++++ ++-+..|..=...|.++...|...+- +.+..+++.++-+.+++++.|-..++.++-.+
T Consensus 121 Fe~T------L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 121 FECT------LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHH------HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 4221 13443 25688999999999999998876432 56778899999999999999999999999888
Q ss_pred Hhhhc--hhH----HHHhHhhHHHHHHHhccC
Q 002400 351 STDLG--PEL----QTQFHHRLLPALVGAMDD 376 (927)
Q Consensus 351 ~~~~~--~~~----~~~~~~~il~~ll~~l~~ 376 (927)
.+.+. ++. ...|+-.++..++..+.|
T Consensus 195 l~n~~~~~~~~~~Fy~~fy~~il~~if~VlTD 226 (321)
T 1w9c_A 195 LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTD 226 (321)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77764 222 234566667777777777
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.10 E-value=0.3 Score=46.37 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=109.4
Q ss_pred HHHHHHHHhCCCH---HHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCH
Q 002400 22 FETLISNLMSSSN---EHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAP 98 (927)
Q Consensus 22 l~~~L~~~~s~d~---~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~ 98 (927)
+.++++.+..-.+ +.-+.|...++.+ +...+..+..-|.++...++|..|+-+|... . . ..
T Consensus 39 ~~~~~~~~~~~~~gf~~~~~~a~~~~~~~----~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~----------~~ 102 (240)
T 3l9t_A 39 VARLEKDFSLIEHGFKEEEQRALTDYKSN----DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K----------DK 102 (240)
T ss_dssp HHHHHHHHTC-----CHHHHHHHHHHHHS----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T----------SH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C----------cH
Confidence 4455555443333 3334444444333 2224567777777777789999999877655 2 2 11
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHH
Q 002400 99 STQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVL 178 (927)
Q Consensus 99 ~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l 178 (927)
+ +-..+-..+..+++-.||-.++.+++.++....|. ..++.+...+.+++..+|..+...+.--+.. ..+
T Consensus 103 ~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~ 172 (240)
T 3l9t_A 103 E----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYF 172 (240)
T ss_dssp H----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTT
T ss_pred H----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chh
Confidence 2 22222222444568899999999999998743341 3788889999999999999998887543322 123
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 179 IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
......+++.+.....|++.-||.+....|..+.
T Consensus 173 k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 173 KENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 3456778999999999999999999988888887
No 114
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.01 E-value=2 Score=45.61 Aligned_cols=345 Identities=14% Similarity=0.156 Sum_probs=174.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhhcccCc---cccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 002400 55 FALNLSRMLSSSSLPECRAMSAILLRKHLTRDD---STSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSEL 131 (927)
Q Consensus 55 ~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~---~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~i 131 (927)
++..+++++.....+++.+...+++-..+...+ .....+..-+. ..+ .++..+...++.....+.+.+++.+
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~----~~~-~l~~~~~~~dd~~~ll~a~~l~~ll 152 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPK----QLE-QLFDVSLKGDFQTVLISGFNVVSLL 152 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTT----HHH-HHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcc----cch-HHHHHHhcccchHHHHHHHHHHHHH
Confidence 567888999888889999988888888876541 00000111111 111 1333333333555556666666666
Q ss_pred HhccCCCCCccchHHHH------HHHhcC-CChHHHHHHHHHHHHhhhh--hHHHHHH----hHHHHHHHHHhhhCCC--
Q 002400 132 AASVLPDGDWPELIPFI------FQCLVT-FNDKIQESALLILSRMSQF--VSEVLIA----HGDTLHEVFSKFLGSN-- 196 (927)
Q Consensus 132 a~~~~~~~~w~~ll~~l------~~~l~s-~~~~~r~~al~~l~~l~~~--~~~~l~~----~~~~l~~~l~~~l~~~-- 196 (927)
+....+ -.+.++.+ +..+.+ .+.+.+..++.+|..+... +...|-. .++.++.++...+.+.
T Consensus 153 ~~~~~~---~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 153 VQNGLH---NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TSTTTC---CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred hccCCc---cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 432221 12344333 333444 2344566788888776543 2222322 2333444334443211
Q ss_pred -----------CHHHHHHHHHHHHHHHHhhCCCchhHHhH-HhhH---HHHHHHHHHHHhcCChhHHHHHHHHHHHHHcc
Q 002400 197 -----------NFDLRIAALEATVNFIMNCLPSLGEKERF-LDLL---PLMMRTLTEALNKGNESSAQEALELLIELAAT 261 (927)
Q Consensus 197 -----------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~~---p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (927)
+.++.+.++-|+..+. |... -.+.+ ...+ +.++..+. .+..|.+.+-++.++.++.+.
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLS---F~~~-~~~~l~~~~i~~~~~L~~i~k---~s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLT---FNPV-FANELVQKYLSDFLDLLKLVK---ITIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHT---TSHH-HHHHHHTTSHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHTTSS
T ss_pred cccccccCCCccHHHHHHHHHHHHHHH---cCHH-HHHHHHhcchHHHHHHHHHHH---hhccchhHHHHHHHHHHHhcc
Confidence 3455666665554433 3211 11222 2223 33333333 345788889999999998876
Q ss_pred Cc----HHHHHHH--HHHHHHHHHHhhccCchhhhhCCcchhH--HHHHHHHHHHHhhhchHHHH--hhHHHHHHHHHhc
Q 002400 262 EP----RFLRKQL--VDVVGSMLQVAEAEAVFPGFLAAPEWQK--HHAVLIALAQIAEGCSKVMI--KNLDQVVSMVLNS 331 (927)
Q Consensus 262 ~~----~~~~~~l--~~ll~~ll~~~~~~~~i~~~l~~~~~~~--r~aal~al~~i~~~~~~~~~--~~l~~l~~~l~~~ 331 (927)
.+ ......+ ...++ +++.+ +...|.. -...+..|....+ +.++ ..+++...-+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~-~l~~L----------~~rk~~Dedl~edl~~L~e~L~---~~~~~ltsfDeY~~El~sG 368 (480)
T 1ho8_A 303 RVKQHKKVIKQLLLLGNALP-TVQSL----------SERKYSDEELRQDISNLKEILE---NEYQELTSFDEYVAELDSK 368 (480)
T ss_dssp SSTTHHHHHHHHHHHHCHHH-HHHHH----------HSSCCSSHHHHHHHHHHHHHHH---HHHHTCCHHHHHHHHHHHT
T ss_pred cchhhhhHHHHHHHHccchH-HHHHH----------hhCCCCcHHHHHHHHHHHHHHH---HHHHhcccHHHHHHHHhcC
Confidence 53 2222221 22222 22222 2222311 1112222222222 1111 1244445445555
Q ss_pred cCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC---------CCCchHHHHHHHHHHHhHhcCCCccc
Q 002400 332 FQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD---------FQNPRVQAHAASAVLNFSENCTPDIL 402 (927)
Q Consensus 332 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~---------~~~~~v~~~a~~al~~l~~~~~~~~~ 402 (927)
.-.-+|.-+...+|.=.. ..+.. ---.++..|++.+.. ..++.+..-||.=++.|++..+...
T Consensus 369 ~L~WSP~H~se~FW~ENa--~kf~e-----~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr- 440 (480)
T 1ho8_A 369 LLCWSPPHVDNGFWSDNI--DEFKK-----DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI- 440 (480)
T ss_dssp CCCCCGGGGCHHHHHHHS--GGGSS-----GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH-
T ss_pred CcccCCCccchhHHHHHH--HHHHh-----cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchh-
Confidence 434466666656654332 11211 111455555555542 1367888899999999998876421
Q ss_pred cCchH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 002400 403 TPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVAD 437 (927)
Q Consensus 403 ~~~l~--~l~~~L~~~l~~~~~~v~~~a~~al~~l~~ 437 (927)
..+. ..-..++.++.+.++.||.+|+.|++.+..
T Consensus 441 -~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 441 -DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp -HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1222 134566888999999999999999988763
No 115
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.89 E-value=1.7 Score=43.70 Aligned_cols=190 Identities=11% Similarity=0.141 Sum_probs=126.3
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhH-------HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhh
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVS-------EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNC 215 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~-------~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 215 (927)
+++..|+..+..-+.+.|..+..++..+...-. +.+.. -+.++..+..+..+++. -..+=..|..++ .+
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~di--Al~~G~mLReci-r~ 153 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEI--ALNCGIMLRECI-RH 153 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTT--HHHHHHHHHHHH-TS
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchh--HhHHHHHHHHHH-Hh
Confidence 578888888888888888888888888765421 11222 26778888888776542 222222233333 11
Q ss_pred CCCchhHHhHHhhH--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcH----HHHHHHHHHHHHHHHHhhccCchhh
Q 002400 216 LPSLGEKERFLDLL--PLMMRTLTEALNKGNESSAQEALELLIELAATEPR----FLRKQLVDVVGSMLQVAEAEAVFPG 289 (927)
Q Consensus 216 ~~~~~~~~~~~~~~--p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~l~~ll~~ll~~~~~~~~i~~ 289 (927)
+.+..++ ...+..+.+.++.+.-+++..|+..+.++....+. ++......++... ..
T Consensus 154 -------e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y----------~~ 216 (341)
T 1upk_A 154 -------EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY----------EK 216 (341)
T ss_dssp -------HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH----------HH
T ss_pred -------HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHH----------HH
Confidence 1111100 01122334456678889999999999998876544 4444444444433 36
Q ss_pred hhCCcchhHHHHHHHHHHHHhhh--chHHHHhhHH--HHHHHHHhccCCCCHHHHHHHHHHHHHhHhh
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEG--CSKVMIKNLD--QVVSMVLNSFQDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~--~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 353 (927)
+++++++-.|+-++..||.+.-. ....+..|+. +-+..++..|+|++..+|..|+..+..+..+
T Consensus 217 Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 217 LLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 78899999999999999998865 3445666653 5577888999999999999999999888764
No 116
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.97 E-value=1.6 Score=45.43 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChh--HHH-----HHHHHHHh-cCCChhHHHHHHHHHHhhcccCccc
Q 002400 18 NPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPD--AFA-----LNLSRMLS-SSSLPECRAMSAILLRKHLTRDDST 89 (927)
Q Consensus 18 ~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~--~~~-----~~L~~il~-~~~~~~~R~~a~v~Lk~~i~~~~~~ 89 (927)
|..=+.++|..+.|+|+..|......|..+...-.+ .|+ ..+...+- +.....+-. ---+|...++..
T Consensus 127 d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIae-LLeilgsIinGf--- 202 (403)
T 3fga_B 127 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGF--- 202 (403)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHH-HHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHH-HHHHHHHHHccc---
Confidence 344577888888899998888888777654433221 011 11111111 111111110 111222233222
Q ss_pred cccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHH
Q 002400 90 SFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSR 169 (927)
Q Consensus 90 ~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~ 169 (927)
=..+.++++..+...|+.......-...-.+++.|+..+...+.. --..++..|+...--.+......-+.-+..
T Consensus 203 ---a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ---ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp ---CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred ---CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 234667888888888887776654455567888898888765521 112233333333333444433444555666
Q ss_pred hhhhhH-HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH--HHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC-Ch
Q 002400 170 MSQFVS-EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVN--FIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG-NE 245 (927)
Q Consensus 170 l~~~~~-~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~-~~ 245 (927)
+++..+ ..+......++..+..++++++..|-..|+..|.+ ++ ..+ ......++|.+...+.+..... +.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~-~li-----~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIM-SLI-----SDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHH-HHH-----HTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHH-HHH-----HHhHHHHHHHHHHHHHHHHHHccCH
Confidence 666553 46667778889999999999999999999877654 22 111 0122346677777666543322 56
Q ss_pred hHHHHHHHHHHHHHccCcHHHHHHH
Q 002400 246 SSAQEALELLIELAATEPRFLRKQL 270 (927)
Q Consensus 246 ~~~~~a~~~l~~l~~~~~~~~~~~l 270 (927)
.+...+..++..+.+.++..+..+.
T Consensus 352 ~v~~l~~~vlk~l~e~d~~lF~~~~ 376 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQKLFDDCT 376 (403)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCTTH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 6777778888777776665554443
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.94 E-value=0.24 Score=45.82 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=103.2
Q ss_pred HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC--ChhHHHHHHHH
Q 002400 177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG--NESSAQEALEL 254 (927)
Q Consensus 177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~--~~~~~~~a~~~ 254 (927)
++..+++.+...+.. ..|.+|+..+..= ..++.++|.+++.+.+-+... +-......+..
T Consensus 8 Elq~yf~~It~a~~~-------~~r~~aL~sL~~D-----------~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~ 69 (196)
T 4atg_A 8 ELQLYFDKILSMIKS-------DMKDIAIECLEKE-----------SGLQQLVPYFIQHISELILKSFKEAEVLKTCIAL 69 (196)
T ss_dssp HHHHHHHHHHHHHTS-------TTHHHHHHHHHHC-----------SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHhcC-----------CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344456666665554 3566666554431 236778888888877655432 55556667777
Q ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCC
Q 002400 255 LIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQD 334 (927)
Q Consensus 255 l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d 334 (927)
...+..++.-++.+|+..++|.++..+-.. .+.. . ..|+-|...++.++..+++.....-+.++..+.+.+.|
T Consensus 70 ~~ALl~N~~l~lepYlH~LipsvLtCll~k-----~l~~-~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 70 YFSLIKNKHVFIDPYLHQILPSLLTCVIGK-----SIVD-D-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp HHHHHHCTTCCCGGGHHHHHHHHHHHHHCT-----TCCC-H-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHhc-----ccCH-H-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 788887776667778888888777544221 1111 2 89999999999999987764445567888888888877
Q ss_pred C--CHHHHHHHHHHHHHhHh
Q 002400 335 P--HPRVRWAAINAIGQLST 352 (927)
Q Consensus 335 ~--~~~vr~~a~~~l~~~~~ 352 (927)
+ +...+..|...+..+..
T Consensus 143 p~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 143 PNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHCH
T ss_pred CCCChHHHHHHHHHHHHhHH
Confidence 6 56779999999988764
No 118
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=94.49 E-value=5.9 Score=41.99 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=104.1
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV 174 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~ 174 (927)
.+.++++..+...|+.......-...-.+++.|+..+...+.. --..++..|+...--.+......-+.-+..+++..
T Consensus 238 PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~ 315 (449)
T 2npp_B 238 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI 315 (449)
T ss_dssp SCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC
Confidence 4667888888777777776554445566888888887765421 11223333333332334333334445566666654
Q ss_pred H-HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH--HHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC-ChhHHHH
Q 002400 175 S-EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVN--FIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG-NESSAQE 250 (927)
Q Consensus 175 ~-~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~-~~~~~~~ 250 (927)
+ ..+......++..+..++++++..|-..|+..|.+ ++ ..+. ..-..++|.+...+.+..... +..+...
T Consensus 316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~-~li~-----~n~~~IlPii~p~L~~~s~~HWn~~V~~l 389 (449)
T 2npp_B 316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIM-SLIS-----DNAAKILPIMFPSLYRNSKTHWNKTIHGL 389 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHH-HHHH-----TTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHH-HHHH-----hchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence 3 45667778899999999999999999999877654 22 1110 112234565555554322222 4567778
Q ss_pred HHHHHHHHHccCcHHHHHHHHH
Q 002400 251 ALELLIELAATEPRFLRKQLVD 272 (927)
Q Consensus 251 a~~~l~~l~~~~~~~~~~~l~~ 272 (927)
+..++..+.+.++..+..+...
T Consensus 390 a~~vlk~l~e~d~~lf~~c~~~ 411 (449)
T 2npp_B 390 IYNALKLFMEMNQKLFDDCTQQ 411 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHH
Confidence 8888888888888777665543
No 119
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.48 E-value=0.86 Score=45.76 Aligned_cols=187 Identities=9% Similarity=0.156 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH-HHhcccCcchhhHH-HHHHHHHHHHHHhhCcchhhhhHHHHHHH
Q 002400 422 QMVQEGALTALASVADSSQGQFQKYYDAVMPYLKA-ILVNANDKSNRMLR-AKSMECISLVGMAVGKDKFRDDAKQVMEV 499 (927)
Q Consensus 422 ~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~-~l~~~~~~~~~~lr-~~a~~~l~~l~~~~~~~~~~~~~~~i~~~ 499 (927)
..+|...+..+...+....+ .....+.++|.|.. .+.+... ..+..| ...+.+++.+...+| +.+.++.+.|++.
T Consensus 43 R~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~-~vp~aRepeVL~l~~tii~kl~-~~i~~~vp~Il~~ 119 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQR-NVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHT-SCGGGCCTHHHHHHHHHHHHHG-GGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHHHHHH-HHhhhhHHHHHHH
Confidence 34666777777777765533 12223444555543 2332211 111222 245889999999998 7788888888876
Q ss_pred HH----HHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhh----hHHHHHHHcccCCCccccCCCCCCCCCCCcch
Q 002400 500 LM----SLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSV----VMPPLLQSAQLKPDVIITSADSDVDIDDEDES 571 (927)
Q Consensus 500 l~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (927)
+. .+.+..+++--..|...+..+..+...+-..+...=+. ++..++-+++.. ..
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~-----------------~r- 181 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT-----------------MR- 181 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS-----------------SH-
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC-----------------Cc-
Confidence 54 45555554433488888888888887655554333333 334444344221 01
Q ss_pred hhhhccCCceeeechhhHHhHHHHHHHHHHHHHHhcc--c-----ccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHH
Q 002400 572 IQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKE--G-----FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 644 (927)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~l~~~~~~--~-----~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l 644 (927)
+--..+++.+..+...... . +..|.-.++..++..++|..|..-=+.=+..|..+
T Consensus 182 ------------------~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~l 243 (321)
T 1w9c_A 182 ------------------NVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYM 243 (321)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHH
Confidence 1123455556555555431 1 34566777777888888876655444444555555
Q ss_pred HHH
Q 002400 645 LRS 647 (927)
Q Consensus 645 ~~~ 647 (927)
+..
T Consensus 244 f~~ 246 (321)
T 1w9c_A 244 FNL 246 (321)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.22 E-value=1.1 Score=41.49 Aligned_cols=147 Identities=16% Similarity=0.310 Sum_probs=91.3
Q ss_pred HHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccC-----CCCchHHHHHHHHH
Q 002400 316 VMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDD-----FQNPRVQAHAASAV 390 (927)
Q Consensus 316 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~-----~~~~~v~~~a~~al 390 (927)
....+++++...+.. ..|.+|+..+.. + + -+.+++|-++..+.+ ..+..+-.......
T Consensus 8 Elq~yf~~It~a~~~-------~~r~~aL~sL~~---D--~-----gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 8 ELQLYFDKILSMIKS-------DMKDIAIECLEK---E--S-----GLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHTS-------TTHHHHHHHHHH---C--S-----SCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHhc---C--C-----ChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 345566666666655 457777777664 2 1 122333333322221 02345555666667
Q ss_pred HHhHhcCCCccccCchHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchh
Q 002400 391 LNFSENCTPDILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNR 467 (927)
Q Consensus 391 ~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~ 467 (927)
..+.++-. =.+.||+..+++.++.++-.. ...+|+.|...++.++...+......-+.+...+.+.+.+... ..
T Consensus 71 ~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~--~l 147 (196)
T 4atg_A 71 FSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR--SE 147 (196)
T ss_dssp HHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS--CH
T ss_pred HHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC--Ch
Confidence 77776644 357899999999999987432 2379999999999999988876555556677777777655322 23
Q ss_pred hHHHHHHHHHHHHHH
Q 002400 468 MLRAKSMECISLVGM 482 (927)
Q Consensus 468 ~lr~~a~~~l~~l~~ 482 (927)
..+-.|+.+++.++.
T Consensus 148 ~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 148 DSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhHH
Confidence 444556666665543
No 121
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.04 E-value=6.6 Score=40.84 Aligned_cols=235 Identities=11% Similarity=0.116 Sum_probs=123.2
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH-HHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHHhhCCC
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG-DTLHEVFSKFLGSN--NFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~-~~l~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
..++-.|+.++.|+|+..|...-.+|..+...+... .+++ ..+-..+.+.+... ...+ ...++++++++ ..+.-
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~-R~~Irk~innif~~fiye~e~~~GI-aeLLeilgsIi-nGfa~ 204 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGI-AELLEILGSII-NGFAL 204 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHTTCCCTTH-HHHHHHHHHHH-HHCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHhcCcccCCCH-HHHHHHHHHHH-cccCC
Confidence 457888999999999999999999999888776542 1111 11222333322222 1122 25677888888 66532
Q ss_pred chhHHhHHhhHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchh
Q 002400 219 LGEKERFLDLLPLMMRTLTEALNKGNES-SAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQ 297 (927)
Q Consensus 219 ~~~~~~~~~~~p~ll~~l~~~l~~~~~~-~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~ 297 (927)
+-..+ ..-.+.+++..+.....-. --.+-..++..+++.+|......+..++... --.+..
T Consensus 205 PLkee----hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~W--------------P~tns~ 266 (403)
T 3fga_B 205 PLKEE----HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW--------------PKTHSP 266 (403)
T ss_dssp SCCHH----HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTC--------------CSSCHH
T ss_pred CchHH----HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhC--------------CCCCcH
Confidence 21111 1111122222221111111 1122233444555566665544444433211 011222
Q ss_pred HHHHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHH--hHhhhchhHHHHhHhhHHHHHHHhc
Q 002400 298 KHHAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQ--LSTDLGPELQTQFHHRLLPALVGAM 374 (927)
Q Consensus 298 ~r~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~il~~ll~~l 374 (927)
....-+.-+..+.+..+ ..+......++..+..++.++|-.|-++|+..... +...+.... ...++-++|.+.+..
T Consensus 267 KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~-~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 267 KEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA-AKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 22233444666666554 34556677788888899999999998888765521 111111111 223344444444444
Q ss_pred cCCCCchHHHHHHHHHHHhHhcCC
Q 002400 375 DDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 375 ~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
..+=++.|+..++.++..+.+.-+
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHccCHHHHHHHHHHHHHHHHhCH
Confidence 442367899999999988876543
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.59 E-value=3 Score=50.71 Aligned_cols=232 Identities=19% Similarity=0.179 Sum_probs=132.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCC--
Q 002400 118 KSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGS-- 195 (927)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~-- 195 (927)
+..|+.+.+++.... -++-+..+.+.+.+......+ +..++....... . | -..++..+...+.+
T Consensus 339 ~~~r~~~lDal~~aG--------T~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~-~---P-t~e~l~~~~~l~~~~~ 404 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMA--------TSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ-Q---A-TRESLSYARELLNTSF 404 (1056)
T ss_dssp HHHHHHHHHHHHHHC--------SHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC-C---C-CHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhHhcC--------CHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC-C---C-CHHHHHHHHHHHhCcc
Confidence 445665555555431 145677777777765544333 334443222111 0 1 12234444444443
Q ss_pred --CCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHH
Q 002400 196 --NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDV 273 (927)
Q Consensus 196 --~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~l 273 (927)
.++.+|..++-+++.++..+..+.. ..-.++++.+.+.+.+.+...+++....++..+.++.- | ..
T Consensus 405 ~~~~~~l~~ta~La~gslV~k~c~~~~--~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p--------~~ 472 (1056)
T 1lsh_A 405 IRNRPILRKTAVLGYGSLVFRYCANTV--SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P--------NS 472 (1056)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHTTCS--SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G--------GG
T ss_pred cccCHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h--------hH
Confidence 3778999999999999843322111 01123466677777777777777777777777776642 2 22
Q ss_pred HHHHHHHhhccCchhhh---hCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhcc--CCCCHHHHHHHHHHHH
Q 002400 274 VGSMLQVAEAEAVFPGF---LAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSF--QDPHPRVRWAAINAIG 348 (927)
Q Consensus 274 l~~ll~~~~~~~~i~~~---l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l--~d~~~~vr~~a~~~l~ 348 (927)
++.+. +++... -.+...++|.+|+.+|..++...++ .+-+.+++.+ ...++.||-+|+..|-
T Consensus 473 l~~l~------~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 473 IKKIQ------RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHH------TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHH------HhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 33333 222111 0123457889999999988865443 2334444444 3468899999998884
Q ss_pred HhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCC
Q 002400 349 QLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 349 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~ 398 (927)
.. .|.. ..+..+...+...++..|+....+.|.++.+...
T Consensus 540 ~t----~P~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 540 ES----KPSV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HT----CCCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HH----CcCH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 32 1222 2344444555543678888888888888877654
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.00 E-value=7.2 Score=38.02 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=101.2
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHH---hh
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIM---NC 215 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~---~~ 215 (927)
.-.|++++.+++...+.+..+|.-....+...+..-+ .+...+++.+...++++++.|...++.+...+.. ++
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888887778888999999999888884432 3567788888888889999999999988887652 11
Q ss_pred C-CCch-------hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc--c-----C------------------
Q 002400 216 L-PSLG-------EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAA--T-----E------------------ 262 (927)
Q Consensus 216 ~-~~~~-------~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~--~-----~------------------ 262 (927)
+ .++. .|..+..+-.. +.....+.+..++..++.|+..++- . .
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~----Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~ 200 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQ----ILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTL 200 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHH----HHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCS
T ss_pred HhcCCCCcchHHHHHHHHHHHHHH----HHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCc
Confidence 1 1211 12233333333 3333456778888888888877651 0 0
Q ss_pred --cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchH
Q 002400 263 --PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSK 315 (927)
Q Consensus 263 --~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~ 315 (927)
+.-+..-...++..++....+. +.....-.+.+.+|+.+++..+.
T Consensus 201 l~~~~Le~Ea~~lL~~LL~~~~~~--------~iss~~l~a~lnsL~~Iak~RP~ 247 (257)
T 3gs3_A 201 FRREKLQEEGNNILDILLQFHGTT--------HISSVNLIACTSSLCTIAKMRPI 247 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCT--------TCCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCC--------ccchHHHHHHHHHHHHHHHhCcH
Confidence 1223333445566555332211 11222355788888888887664
No 124
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.57 E-value=8.2 Score=37.61 Aligned_cols=112 Identities=10% Similarity=0.111 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHH
Q 002400 98 PSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEV 177 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 177 (927)
++...++-..+++. ...++..+|+.++..+....+... ..-+..++.|..++.++++.+.+.++.+...+....-..
T Consensus 48 p~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~--~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 48 AELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKV--ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp GGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666774 444688999999999998876532 345677777888888889999999998888876553322
Q ss_pred H-------------HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 002400 178 L-------------IAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 178 l-------------~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
+ =..+..+-..+.+.+.+.+..||..+++++..++
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 1 1134455556666777779999999999999987
No 125
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.96 E-value=0.055 Score=52.82 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=113.7
Q ss_pred hcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhh
Q 002400 114 NETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFL 193 (927)
Q Consensus 114 ~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l 193 (927)
.++++.||..++..+ + ++ .+..+++++++.+|..+...+. .+.+...+
T Consensus 60 ~d~~~~VR~~AA~~l--------~----~~---~l~~L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll 107 (244)
T 1lrv_A 60 ADPFWERRAIAVRYS--------P----VE---ALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALM 107 (244)
T ss_dssp TCSSHHHHHHHHTTS--------C----GG---GGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTT
T ss_pred cCCCHHHHHHHHHhC--------C----HH---HHHHHccCcCHHHHHHHHHHCC-----------------HHHHHHHH
Confidence 445788888777532 1 22 2445567888888887775421 02456677
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHH
Q 002400 194 GSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDV 273 (927)
Q Consensus 194 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~l 273 (927)
+|++..||..+...+ +. ..+..++++++..++..+..- + .+
T Consensus 108 ~D~d~~VR~~aA~~l--------~~---------------~~L~~L~~D~d~~VR~~aA~~---l---~~---------- 148 (244)
T 1lrv_A 108 FDEDREVRITVADRL--------PL---------------EQLEQMAADRDYLVRAYVVQR---I---PP---------- 148 (244)
T ss_dssp TCSCHHHHHHHHHHS--------CT---------------GGGGGGTTCSSHHHHHHHHHH---S---CG----------
T ss_pred cCCCHHHHHHHHHhC--------CH---------------HHHHHHHcCCCHHHHHHHHHh---c---CH----------
Confidence 888888888877531 11 012223456666666655541 1 00
Q ss_pred HHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhh
Q 002400 274 VGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 274 l~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 353 (927)
+.+..+++|++|.+|.++...++ -+.+...++|+++.||.++...+
T Consensus 149 -----------~~l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l------ 194 (244)
T 1lrv_A 149 -----------GRLFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL------ 194 (244)
T ss_dssp -----------GGGGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC------
T ss_pred -----------HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC------
Confidence 23346677899999998877521 02344677999999999888652
Q ss_pred hchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 002400 354 LGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 433 (927)
Q Consensus 354 ~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~ 433 (927)
.. +.+...+.| +++.||..+...++ .+.+..+ ++.++.||..+...+|
T Consensus 195 -~~-----------~~L~~Ll~D-~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RG-----------DDLLELLHD-PDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CG-----------GGGGGGGGC-SSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CH-----------HHHHHHHcC-CCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 11 235566788 89999998888742 1333334 8888999988766544
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.41 E-value=15 Score=38.13 Aligned_cols=188 Identities=19% Similarity=0.252 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 002400 247 SAQEALELLIELA-ATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVV 325 (927)
Q Consensus 247 ~~~~a~~~l~~l~-~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~ 325 (927)
.....+.-..+++ ..+|.++..+++.++ ++..+++..+|.-....|+..+.. -.+++..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il--------------~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l 102 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEII--------------AFQADKSIEVRKFVIGFIEEACKR----DIELLLKLI 102 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHH--------------GGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHH--------------HhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3444444444542 245555444444443 333466788888877777665542 235677888
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhHhhh------chh---HHH---HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHh
Q 002400 326 SMVLNSFQDPHPRVRWAAINAIGQLSTDL------GPE---LQT---QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNF 393 (927)
Q Consensus 326 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~------~~~---~~~---~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l 393 (927)
+.+...+.|+++.|...+..|.+.+.... .+. ... ..+..+-..++..+++ .+..||..+.+.+..+
T Consensus 103 ~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds-~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 103 ANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDS-DNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHH
Confidence 88888889999999888888777665311 010 001 2334445556676776 7899999999999998
Q ss_pred HhcCCC-----c------------ccc---Cc---------hHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHhhhh
Q 002400 394 SENCTP-----D------------ILT---PY---------LDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 394 ~~~~~~-----~------------~~~---~~---------l~~l~~~L~~~l~~~--~~~v~~~a~~al~~l~~~~~~~ 442 (927)
+-.... + .+. |+ -..+++.|+..+... ++..-..++.+++.+++.-+
T Consensus 182 Il~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP-- 259 (386)
T 3o2t_A 182 IVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP-- 259 (386)
T ss_dssp HHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG--
T ss_pred HHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH--
Confidence 732210 0 111 11 246788888888753 23344455666666665433
Q ss_pred hHHhHHHHHHHHHHH
Q 002400 443 FQKYYDAVMPYLKAI 457 (927)
Q Consensus 443 ~~~~~~~i~~~L~~~ 457 (927)
.|++.+++.|...
T Consensus 260 --~~~~rIl~aL~~l 272 (386)
T 3o2t_A 260 --MFMSEVIQAYETL 272 (386)
T ss_dssp --GGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhh
Confidence 2677788877765
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.06 E-value=2.2 Score=38.34 Aligned_cols=78 Identities=13% Similarity=0.279 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
...+..|.+.|++.++.|+..|+..+..+..++++.+..... ..++..+.+.+....++.|+..+...+....+..+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456778888899999999999999999999999987753222 234444545444325689999999999998887764
No 128
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=90.36 E-value=20 Score=37.91 Aligned_cols=121 Identities=13% Similarity=0.197 Sum_probs=73.5
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC
Q 002400 183 DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATE 262 (927)
Q Consensus 183 ~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (927)
..++..+++..--.+..=...-+.-+..++ +.+ +...|..++..+...+..++.+..-.++..|+.+|.+---
T Consensus 283 ~~vi~~LLk~WP~tns~KevlFL~eleeil-e~~----~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i-- 355 (449)
T 2npp_B 283 EPVVMALLKYWPKTHSPKEVMFLNELEEIL-DVI----EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI-- 355 (449)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHH-TTC----CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH--
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHH-HhC----CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH--
Confidence 345555555554444433334444444555 444 2356888999999999999999999999999988843100
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcch--hHHHHHHHHHHHHhhhchHHH
Q 002400 263 PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEW--QKHHAVLIALAQIAEGCSKVM 317 (927)
Q Consensus 263 ~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~--~~r~aal~al~~i~~~~~~~~ 317 (927)
-..+..+...++|.+...+ .+. ...+| .+|..+..++..+.+..++.+
T Consensus 356 ~~li~~n~~~IlPii~p~L------~~~-s~~HWn~~V~~la~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 356 MSLISDNAAKILPIMFPSL------YRN-SKTHWNKTIHGLIYNALKLFMEMNQKLF 405 (449)
T ss_dssp HHHHHTTHHHHHHHHHHHH------TSC-TTCCSSTTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhchhhhHHhhHHHH------HHH-HHHhcCHHHHHHHHHHHHHHHHHCHHHH
Confidence 1233344455666555221 111 12345 578888888888887766543
No 129
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.36 E-value=16 Score=36.71 Aligned_cols=188 Identities=16% Similarity=0.105 Sum_probs=111.3
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccccC-HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCC--Ccc
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTRLA-PSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDG--DWP 142 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~-~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~--~w~ 142 (927)
.-+-+.|.-++.++.+.+.... +..+.... -..+..|-..|+..-. ++.+.-..+..+-..++++.-.. -+.
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~--~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRecir~e~la~~iL~~ 163 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQI--GTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRECIRHEPLAKIILWS 163 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCB--TTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHHHHTSHHHHHHHHHS
T ss_pred cCCchhhccHHHHHHHHHhccc--CCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHHHHHhHHHHHHHhcc
Confidence 4567777777777666665541 11111100 0011223333333222 33444444444443333321000 012
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhH----HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCC
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVS----EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~----~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
+.+-.+++.++.++-++-..|+.++..+..... +-+..+.+.+...+.+++.+++--+|..+++.|+.++ ..
T Consensus 164 ~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL-ld--- 239 (341)
T 1upk_A 164 EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL-LD--- 239 (341)
T ss_dssp GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HS---
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH-hC---
Confidence 234456678888888888889999988876533 3455677888888889999999999999999999988 31
Q ss_pred chhHHhHHhhH--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHccC
Q 002400 219 LGEKERFLDLL--PLMMRTLTEALNKGNESSAQEALELLIELAATE 262 (927)
Q Consensus 219 ~~~~~~~~~~~--p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (927)
.........++ |.-+..+..++.+....+..+|+.++.-++.++
T Consensus 240 r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 240 RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 11122333333 444566666777788888889998888777653
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.71 E-value=21 Score=37.04 Aligned_cols=172 Identities=12% Similarity=0.047 Sum_probs=108.1
Q ss_pred CCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhC--
Q 002400 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCL-- 216 (927)
Q Consensus 139 ~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-- 216 (927)
.-.+++++.+++...+++..+|..+...+.+.+..-. .+...+++.+...+.++++.|...++.+..++....+
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~----el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI----ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999889999999999999988875322 2467788888888888899999998888777552111
Q ss_pred --CCc-------hhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHc--c----C-------------------
Q 002400 217 --PSL-------GEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAA--T----E------------------- 262 (927)
Q Consensus 217 --~~~-------~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~--~----~------------------- 262 (927)
.++ ..|..+..+-..++. ...+++..++..++.|+..++- . .
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~----~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~n 210 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIIL----LLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRD 210 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHH----GGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTT
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHH----HhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCC
Confidence 011 123333333333333 3456778888888888877651 0 0
Q ss_pred -----cHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHh
Q 002400 263 -----PRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLN 330 (927)
Q Consensus 263 -----~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~ 330 (927)
+.-+..--..++..++..+..+ +-+...--+.+.+|+.++...+. +.+.+++.+..
T Consensus 211 Hp~L~~~~Le~EA~~lLd~LL~~l~~~--------~iss~~l~a~lnsLa~Iak~RP~----~~~rIl~aL~~ 271 (386)
T 3o2t_A 211 HPYIQYNVLWEEGKAALEQLLKFMVHP--------AISSINLTTALGSLANIARQRPM----FMSEVIQAYET 271 (386)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHccc--------ccccHHHHHHHHHHHHHHHhcHH----HHHHHHHHHHh
Confidence 0122333445666666433221 11223445788888888887764 45556665543
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.40 E-value=2.5 Score=36.87 Aligned_cols=101 Identities=9% Similarity=0.290 Sum_probs=68.8
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLP 368 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~ 368 (927)
.+.++||.. ..-+..+...-+. .-...+..+.+.|++.++.+...|+..+..+..++|+.+.... -..++.
T Consensus 17 ~l~~~dw~~----ileicD~I~~~~~----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 17 MNTAEDWGL----ILDICDKVGQSRT----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp TSSSCCHHH----HHHHHHHHTTSTT----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCCcCHHH----HHHHHHHHHCCCc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 345678854 3333333332221 2345677888889999999999999999999999998774221 123444
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
.+...+.. .++.|+..+...+....+..+.
T Consensus 89 el~~l~~~-~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 89 EVSNVLNK-GHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHH-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-CCHHHHHHHHHHHHHHHHHhCC
Confidence 44555555 6789999999999888877654
No 132
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.92 E-value=0.14 Score=49.90 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=119.3
Q ss_pred HhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCcc
Q 002400 63 LSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWP 142 (927)
Q Consensus 63 l~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~ 142 (927)
+..+.++.+|..|+..| ++. ++..|..++++.||..++..+ + +
T Consensus 58 ll~d~~~~VR~~AA~~l-----------------~~~--------~l~~L~~D~~~~VR~~aA~~L--------~----~ 100 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS-----------------PVE--------ALTPLIRDSDEVVRRAVAYRL--------P----R 100 (244)
T ss_dssp GTTCSSHHHHHHHHTTS-----------------CGG--------GGGGGTTCSSHHHHHHHHTTS--------C----S
T ss_pred HhcCCCHHHHHHHHHhC-----------------CHH--------HHHHHccCcCHHHHHHHHHHC--------C----H
Confidence 33578899998888632 111 133444456889999887532 2 1
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhH
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEK 222 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 222 (927)
+.+..+++++++.+|..+..-+ . .+.+...++|++..||..+... ++.
T Consensus 101 ---~~L~~ll~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~--------l~~---- 148 (244)
T 1lrv_A 101 ---EQLSALMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR--------IPP---- 148 (244)
T ss_dssp ---GGGGGTTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH--------SCG----
T ss_pred ---HHHHHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh--------cCH----
Confidence 2355667888999998877732 1 1234566788999999988762 110
Q ss_pred HhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhccCchhhhhCCcchhHHHHH
Q 002400 223 ERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV 302 (927)
Q Consensus 223 ~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~~~i~~~l~~~~~~~r~aa 302 (927)
..+..+++++++.++..+...+ + + +.+..+++|++|.+|.++
T Consensus 149 -----------~~l~~l~~D~d~~VR~~aa~~l-------~-----------~---------~ll~~ll~D~d~~VR~aa 190 (244)
T 1lrv_A 149 -----------GRLFRFMRDEDRQVRKLVAKRL-------P-----------E---------ESLGLMTQDPEPEVRRIV 190 (244)
T ss_dssp -----------GGGGGTTTCSCHHHHHHHHHHS-------C-----------G---------GGGGGSTTCSSHHHHHHH
T ss_pred -----------HHHHHHHcCCCHHHHHHHHHcC-------C-----------H---------HHHHHHHcCCCHHHHHHH
Confidence 0222334566777776665420 0 0 334567789999999998
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchH
Q 002400 303 LIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRV 382 (927)
Q Consensus 303 l~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v 382 (927)
...+. .+.+...+.|++|.||.++...++ .+.+ ..|.| +++.|
T Consensus 191 a~~l~-----------------~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L-~~L~D-~~~~V 233 (244)
T 1lrv_A 191 ASRLR-----------------GDDLLELLHDPDWTVRLAAVEHAS------------------LEAL-RELDE-PDPEV 233 (244)
T ss_dssp HHHCC-----------------GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHH-HHCCC-CCHHH
T ss_pred HHhCC-----------------HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHH-HHccC-CCHHH
Confidence 87631 135677789999999999988764 1223 33577 89999
Q ss_pred HHHHHHHHH
Q 002400 383 QAHAASAVL 391 (927)
Q Consensus 383 ~~~a~~al~ 391 (927)
|..+...|+
T Consensus 234 R~aa~~~L~ 242 (244)
T 1lrv_A 234 RLAIAGRLG 242 (244)
T ss_dssp HHHHHCCC-
T ss_pred HHHHHHHhC
Confidence 998876543
No 133
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.89 E-value=15 Score=44.52 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=102.9
Q ss_pred HHHHHHHHhc---CCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 002400 56 ALNLSRMLSS---SSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELA 132 (927)
Q Consensus 56 ~~~L~~il~~---~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia 132 (927)
+..+..++.+ ..++.+|+.|.+.+-.++.+. .. .-...+.+....+...+.+.+... +..-+.....+++++.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~--c~-~~~~c~~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY--CA-NTVSCPDELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH--HT-TCSSCCGGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHH--hc-cCCCCCHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccC
Confidence 3444444443 245677777777777776553 00 012235565677888888888765 4555556667777663
Q ss_pred hccCCCCCccchHHHHHHHhcC-------CChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhC--CCCHHHHHH
Q 002400 133 ASVLPDGDWPELIPFIFQCLVT-------FNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLG--SNNFDLRIA 203 (927)
Q Consensus 133 ~~~~~~~~w~~ll~~l~~~l~s-------~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~--~~~~~vr~~ 203 (927)
. |+.++.|..++.. ....+|..|+.+|..+....+.. +.+++.+... ..+.++|.+
T Consensus 469 ~--------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 469 Q--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp C--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHH
T ss_pred C--------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHH
Confidence 2 5677877777642 23467788999999988765543 4445555553 348999999
Q ss_pred HHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHccC
Q 002400 204 ALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALN-KGNESSAQEALELLIELAATE 262 (927)
Q Consensus 204 a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~ 262 (927)
|+..|...- ++ ... ++.+...+. +.+.++.......+..+++..
T Consensus 534 A~~~Lm~t~----P~-------~~~----l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 534 SCIVFFESK----PS-------VAL----VSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHTC----CC-------HHH----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHC----cC-------HHH----HHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 997765422 11 112 222323232 356667766667777777654
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.82 E-value=8.2 Score=33.93 Aligned_cols=78 Identities=10% Similarity=0.256 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccC-----CCCchHHHHHHHHHHHhHh
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDD-----FQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~-----~~~~~v~~~a~~al~~l~~ 395 (927)
...+..+.+.+++.++.|...|+..+..+..++|+.+.... -..++..+.+.+.. ..++.|+..+...+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677788889999999999999999999999998774433 24567777776653 1367899999999998888
Q ss_pred cCCC
Q 002400 396 NCTP 399 (927)
Q Consensus 396 ~~~~ 399 (927)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7753
No 135
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=86.09 E-value=34 Score=35.41 Aligned_cols=200 Identities=10% Similarity=0.062 Sum_probs=105.1
Q ss_pred CcchhHHHHHHHHHHHHhhh---chHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhh-HH
Q 002400 293 APEWQKHHAVLIALAQIAEG---CSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHR-LL 367 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~---~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-il 367 (927)
++.|..-......+..+.+. .++..+.+++ .++-.++..+..++++=|......+.++...+.... .++.. +-
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R--~~Irk~i~ 217 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLR--AYIRKQIN 217 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 56788777777777666553 1233445554 477788888999999999998888877765443211 22222 22
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHhhhhhHHh
Q 002400 368 PALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQGQFQKY 446 (927)
Q Consensus 368 ~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~-~v~~~a~~al~~l~~~~~~~~~~~ 446 (927)
..+.+.+.......--......++.++.+...-.-+.+..-+...|+.+.+.... ........|+..+...-+ ..
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp----~L 293 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS----TL 293 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCG----GG
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCc----hh
Confidence 2233333321222233456677777777764211112333344445555443321 122233344444443322 23
Q ss_pred HHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHH
Q 002400 447 YDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 502 (927)
Q Consensus 447 ~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 502 (927)
...++..|...|-..+... .+ --+.-+..+...++++.|.+....++..+-.
T Consensus 294 ~~~vi~~LLk~WP~tns~K--ev--lFL~eleeiLe~~~~~~f~~i~~~lF~~la~ 345 (392)
T 2jak_A 294 TEPVVMALLKYWPKTHSPK--EV--MFLNELEEILDVIEPSEFVKIMEPLFRQLAK 345 (392)
T ss_dssp HHHHHHHHHHSSCSSCCTT--HH--HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchH--HH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4455666666654433211 11 1244456666667767777777766666554
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.04 E-value=7.6 Score=35.13 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHHHHHhccC-----CCCchHHHHHHHHHHHhHh
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPALVGAMDD-----FQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~ll~~l~~-----~~~~~v~~~a~~al~~l~~ 395 (927)
...+..|.+.+++.++.|+..|+..|..+..++|+.+...+. ..++..+.+.+.. ..+..|+..+...+.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 356778888899999999999999999999999987743321 2355666666542 1357899999999999988
Q ss_pred cCCC
Q 002400 396 NCTP 399 (927)
Q Consensus 396 ~~~~ 399 (927)
..+.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8763
No 137
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=85.65 E-value=41 Score=35.83 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHh
Q 002400 335 PHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 335 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~ 395 (927)
.++.+-..||.=+|.++.+.+....-----..=..+++.+.+ +++.||..|..|+..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h-~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH-SDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC-SSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 368889999999999999875432100011345667888888 999999999999988763
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.58 E-value=6.1 Score=34.78 Aligned_cols=78 Identities=10% Similarity=0.209 Sum_probs=60.5
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccC-----CCCchHHHHHHHHHHHhHh
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDD-----FQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~-----~~~~~v~~~a~~al~~l~~ 395 (927)
...+..+.+.+++.+|.+...|+..+..+..++|+.+.... -..++..+.+.+.+ ..++.|+..+...+.....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 35677888889999999999999999999999998774332 23456666666653 1467899999999999988
Q ss_pred cCCC
Q 002400 396 NCTP 399 (927)
Q Consensus 396 ~~~~ 399 (927)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7753
No 139
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=85.29 E-value=22 Score=36.82 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=71.1
Q ss_pred ccCHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhh
Q 002400 95 RLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFV 174 (927)
Q Consensus 95 ~l~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~ 174 (927)
.+.++++..+...|+.......-...-.+++.|+..+...+.. --..++..|+...--.+......-+.-+..+.+..
T Consensus 250 PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~ 327 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI 327 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC
Confidence 4667788877777777766543444556788888877765421 11123333333222222222233445556666554
Q ss_pred H-HHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 002400 175 S-EVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVN 210 (927)
Q Consensus 175 ~-~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~ 210 (927)
+ ..+......+...+.+++++++..|-.+|+..|.+
T Consensus 328 ~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wnN 364 (392)
T 2jak_A 328 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN 364 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCc
Confidence 3 35666778889999999999999999999877654
No 140
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=85.13 E-value=78 Score=38.63 Aligned_cols=356 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHh-----------
Q 002400 102 ANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRM----------- 170 (927)
Q Consensus 102 ~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l----------- 170 (927)
..+-+.+++.+... +..+++-+...+-.|... .+-+++...|.++++. ++......+.+|+.+
T Consensus 156 ~~l~~ki~~vl~va-p~~lQ~diI~sLPeIl~d----s~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~vr 229 (1323)
T 3s4w_B 156 KDLTAQMMQLISVA-PVNLQHDFITSLPEILGD----SQHANVGKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKIR 229 (1323)
T ss_dssp HHHHHHHHHHHHHS-CTTTHHHHHHTHHHHSCG----GGHHHHHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHHHHHHHHHHhHHHhcc----hhhHHHHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHHH
Q ss_pred ---hhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH-------------------HHhhCCCchhHHhHHhh
Q 002400 171 ---SQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNF-------------------IMNCLPSLGEKERFLDL 228 (927)
Q Consensus 171 ---~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l-------------------~~~~~~~~~~~~~~~~~ 228 (927)
.+.+...-...++.++.++++..+..+..--...++--..+ - ...........-++.
T Consensus 230 ~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~-~~~~~~~~~~s~~~~ 308 (1323)
T 3s4w_B 230 QLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKG-LASSSGNQENSDKDC 308 (1323)
T ss_dssp HHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC-----------------------------CHHHHH
T ss_pred HHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccc-cccCCccccccccch
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc-------CchhhhhCCcchhHHHH
Q 002400 229 LPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAE-------AVFPGFLAAPEWQKHHA 301 (927)
Q Consensus 229 ~p~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~-------~~i~~~l~~~~~~~r~a 301 (927)
.-.+++.+...+. ......+.|....+..+..-....-+++=.++-+..+. ..+...+.+....
T Consensus 309 ~~lild~lks~l~-----~~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it---- 379 (1323)
T 3s4w_B 309 IVLVFDVIKSAIR-----YEKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQ---- 379 (1323)
T ss_dssp HHHHHHHHHHHHH-----HCHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSC----
T ss_pred HHHHHHHHHHHHh-----cChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCch----
Q ss_pred HHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCch
Q 002400 302 VLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPR 381 (927)
Q Consensus 302 al~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~ 381 (927)
...+...-.+....+..+++.++...-..+...++.||.-+......+...+. ..+.++++..|+..+.+ ++..
T Consensus 380 -~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd----~~~qqeVl~~Lv~hi~s-g~~~ 453 (1323)
T 3s4w_B 380 -EQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD----TYCQQEVVGALVTHVCS-GTEA 453 (1323)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHH-CCHH
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHhhhcC-CCcH
Q ss_pred HHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhH-HhHHHHHHHHHHHHhc
Q 002400 382 VQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQ-KYYDAVMPYLKAILVN 460 (927)
Q Consensus 382 v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~~~i~~~L~~~l~~ 460 (927)
-...|...|..++...+ +.+.||.. ++..++..+++-+..=-..++..++.++...+..-. ..-+.+.-.+.+-+..
T Consensus 454 eVd~ALdvL~~L~~~~~-~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~ 531 (1323)
T 3s4w_B 454 EVDTALDVLLELIVLNA-SAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSS 531 (1323)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCH-HHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhC
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhhC
Q 002400 461 ANDKSNRMLRAKSMECISLVGMAVG 485 (927)
Q Consensus 461 ~~~~~~~~lr~~a~~~l~~l~~~~~ 485 (927)
.....|...+-..-.++..++
T Consensus 532 ----~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 532 ----TVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp ----SSHHHHHHHHHHHHHHHHHTT
T ss_pred ----CchhhhhhhHHHHHHHHHHHH
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.09 E-value=6.8 Score=37.49 Aligned_cols=79 Identities=10% Similarity=0.210 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc
Q 002400 322 DQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 322 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 400 (927)
...+..|.+.|++.++.|+..|+..|..+..+.|+.+.... -..++..|.+.++...++.|+..+...+....+....+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46778888889999999999999999999999998764322 12334444444444356889999999999988877543
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.13 E-value=7.6 Score=37.02 Aligned_cols=79 Identities=6% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHh-HhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 321 LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQF-HHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 321 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
-...+..+.+.|++.++.|+..|+..|..+..+.|+.+.... -..++..+...+.+..+..|+..+...+....+....
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 346777888889999999999999999999999987664321 1124444444444435689999999988888877653
No 143
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=82.44 E-value=36 Score=32.68 Aligned_cols=211 Identities=14% Similarity=0.127 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccc-cccC
Q 002400 19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIF-TRLA 97 (927)
Q Consensus 19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w-~~l~ 97 (927)
.+.+.+++..+.+|+ .|..|-..|-.-++..|+ ..+.|.+-.. .-+.+|...++.++ ..+ ..++
T Consensus 2 ~~~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~-La~~LW~S~G---------tia~LLQEIisiYp---~lspp~Lt 66 (268)
T 2fv2_A 2 REKIYQWINELSSPE--TRENALLELSKKRESVPD-LAPMLWHSFG---------TIAALLQEIVNIYP---SINPPTLT 66 (268)
T ss_dssp CHHHHHHHHHTSSTT--THHHHHHHHHHHTTTCTT-HHHHHHHSTT---------HHHHHHHHHHHTGG---GBTTBCCC
T ss_pred hHHHHHHHHHhcCch--hHHHHHHHHHHhhhcccc-HHHHHHhccC---------HHHHHHHHHHHHcc---cCCCcccC
Confidence 356777777777665 477776666554443443 2233322211 12344455554431 011 1233
Q ss_pred HhHHHHHHH--HHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCC--ChHHHHHHHHHHHHhhhh
Q 002400 98 PSTQANLKS--VLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTF--NDKIQESALLILSRMSQF 173 (927)
Q Consensus 98 ~~~~~~ik~--~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~--~~~~r~~al~~l~~l~~~ 173 (927)
...-+.+-+ .|++.+.+ ++..|...-+ ...|-++-.++...... -+..|-.++.+++.+.+.
T Consensus 67 ~~~SnRVcnaLaLlQcvAs--hpetr~~Fl~------------a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~ 132 (268)
T 2fv2_A 67 AHQSNRVCNALALLQCVAS--HPETRSAFLA------------AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKT 132 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTTHHHHHH------------TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhHHHHHHHHHHHHHc--CcchhhHHHH------------ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhcc
Confidence 332222222 23344442 2333332111 23444443334332222 246788999999998876
Q ss_pred hHHHHHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCch------hHHhHHhhHHHHHHHHHHHHhcCCh
Q 002400 174 VSEVLIAHG--DTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLG------EKERFLDLLPLMMRTLTEALNKGNE 245 (927)
Q Consensus 174 ~~~~l~~~~--~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~------~~~~~~~~~p~ll~~l~~~l~~~~~ 245 (927)
-......++ .+++|.+++.+..+++-.+..|.-.+..++ .. +.+ ..+.|..+...+-+.+.++.+++..
T Consensus 133 dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL-~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~ 209 (268)
T 2fv2_A 133 DEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL-LD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSA 209 (268)
T ss_dssp CCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCH
T ss_pred CcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh-cc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 444333332 468999999999999999999998888887 21 100 0122322222222222333345556
Q ss_pred hHHHHHHHHHHHHHcc
Q 002400 246 SSAQEALELLIELAAT 261 (927)
Q Consensus 246 ~~~~~a~~~l~~l~~~ 261 (927)
...+..+.+...++++
T Consensus 210 RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 210 RLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6666666666666654
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.50 E-value=44 Score=33.68 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=87.8
Q ss_pred CcchhHHHHHHHHHHHHhhhchHHHHhhHH-HHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHH-HhHhhHHHHH
Q 002400 293 APEWQKHHAVLIALAQIAEGCSKVMIKNLD-QVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQT-QFHHRLLPAL 370 (927)
Q Consensus 293 ~~~~~~r~aal~al~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~il~~l 370 (927)
+.+-+.++-++..|..+...-.+...+.+. .=+..++....+.+...+.-++.++++++.+... +.. --.+.++..+
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-m~gvvs~~~fI~~l 207 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG-MLGVVAHSDTIQWL 207 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH-HHHHHHCHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc-ccchhCCHHHHHHH
Confidence 345666777777777744321111111111 1123344444555788888899999999876321 100 1146678888
Q ss_pred HHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHH------------HHHHHHHHhc---CCChhHHHHHHHHHHHH
Q 002400 371 VGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDG------------IVSKLLVLLQ---NGKQMVQEGALTALASV 435 (927)
Q Consensus 371 l~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~------------l~~~L~~~l~---~~~~~v~~~a~~al~~l 435 (927)
...+.+ ....|...|...|..+++...... +.+.. .++.++..|+ ..+..++..++..|..+
T Consensus 208 yslv~s-~~~~V~k~AL~LL~v~V~~se~~~--~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 208 YTLCAS-LSRLVVKTALKLLLVFVEYSENNA--PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHGGGC-SCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHcC-ccHHHHHHHHHHHHHHHccCcccc--hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 888887 788999999999999998874211 11111 1345666665 56778888888888877
Q ss_pred HHHhh
Q 002400 436 ADSSQ 440 (927)
Q Consensus 436 ~~~~~ 440 (927)
...++
T Consensus 285 L~~ap 289 (339)
T 3dad_A 285 LAALP 289 (339)
T ss_dssp HHHCS
T ss_pred HhcCC
Confidence 76655
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.90 E-value=27 Score=30.25 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH--HHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400 406 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY--DAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA 483 (927)
Q Consensus 406 l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 483 (927)
-...+..+.+-+++.++.++..|+..+..++..+|..|...+ ..++..|..++.. .+..+|.++++.+..-+.+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~----~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK----GHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHH
Confidence 356777888888889999999999999999999998776333 3444445555432 3457899899988888877
Q ss_pred hCcchhhhhHHHHHHH
Q 002400 484 VGKDKFRDDAKQVMEV 499 (927)
Q Consensus 484 ~~~~~~~~~~~~i~~~ 499 (927)
.+.+.-.++...++..
T Consensus 116 f~~~~~l~~i~~~Y~~ 131 (140)
T 3ldz_A 116 FKNDPQLSLISAMIKN 131 (140)
T ss_dssp HTTCGGGTHHHHHHHH
T ss_pred hCCCCCchHHHHHHHH
Confidence 6643222333344443
No 146
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=80.17 E-value=14 Score=32.79 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHH-HHHhccC--CCCchHHHHHHHHHHHhHhc
Q 002400 322 DQVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPA-LVGAMDD--FQNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 322 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~-ll~~l~~--~~~~~v~~~a~~al~~l~~~ 396 (927)
...+..+.+.++ ++++.|+..|+..+..+..++|+.+..... ..++.. +++.+.. .+...|+..+...+....+.
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 456777888887 589999999999999999999987743322 235555 4555532 13458999999998888876
Q ss_pred CC
Q 002400 397 CT 398 (927)
Q Consensus 397 ~~ 398 (927)
.+
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.60 E-value=16 Score=32.77 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhh
Q 002400 116 TNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFL 193 (927)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l 193 (927)
++...--.+|+.|.. . + ..=.+.+..|...+++.++.+...|+.+|..+...++..|...+ ..++.-+.+.+
T Consensus 31 ~Dw~~~leicD~I~~----~-~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~ 104 (163)
T 1x5b_A 31 EDWSLIMDICDKVGS----T-P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI 104 (163)
T ss_dssp CCHHHHHHHHHHHHH----S-S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhC----C-C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 355555556666643 1 1 12246777788888999999999999999999999887665322 23333333333
Q ss_pred CC-CCHHHHHHHHHHHHHHHHhhCCC
Q 002400 194 GS-NNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 194 ~~-~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
.. .++.|+..++..+..+. ..+.+
T Consensus 105 ~~~~~~~Vk~kil~li~~W~-~~f~~ 129 (163)
T 1x5b_A 105 KNKAHPKVCEKLKSLMVEWS-EEFQK 129 (163)
T ss_dssp HTTCCHHHHHHHHHHHHHHH-HHTTT
T ss_pred ccCCCHHHHHHHHHHHHHHH-HHhcC
Confidence 33 47899999999999998 76653
No 148
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=78.64 E-value=58 Score=32.77 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=76.1
Q ss_pred HHHhccCCCCHHHHHHHHHHHHH-hHhhhchhHHHHhH-hhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC--ccc
Q 002400 327 MVLNSFQDPHPRVRWAAINAIGQ-LSTDLGPELQTQFH-HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP--DIL 402 (927)
Q Consensus 327 ~l~~~l~d~~~~vr~~a~~~l~~-~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~~ 402 (927)
.++..|.+.+.+.+..++..|.+ +.+. .++..+|. .+-+..|+....+ .+...+.++..||..+...... ..+
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D--~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQED--KDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTC--TTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcc--hHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhccccccchh
Confidence 34444455677778888888887 4432 22322332 3457777787777 7889999999999998765211 111
Q ss_pred cCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 403 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 403 ~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
. -+..+..+..++.+....|...++..+-.++......
T Consensus 199 s--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~ 236 (339)
T 3dad_A 199 A--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENN 236 (339)
T ss_dssp H--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred C--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCccc
Confidence 1 2567788888888877888888999999988777544
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.40 E-value=13 Score=32.06 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhc---CCC--C
Q 002400 715 CIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIR---HPN--A 789 (927)
Q Consensus 715 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~---~~~--~ 789 (927)
..+.+|++..-..-...+..++..|.+++.++++.++--|...|..++.++++.|...+..=...+..+.+ .++ .
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~ 109 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLK 109 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCccc
Confidence 44556666543322234678999999999999999999999999999999987776655443333333332 112 1
Q ss_pred CCchhhhHHHHHHHHHHHH
Q 002400 790 LHSDNVMAYDNAVSALGKI 808 (927)
Q Consensus 790 ~~~~~~~~~~na~~al~~l 808 (927)
-.+-...||+.|-.++.-|
T Consensus 110 G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 110 GDALNKAVRETAHETISAI 128 (140)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 1233577887766555444
No 150
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.15 E-value=17 Score=34.63 Aligned_cols=130 Identities=10% Similarity=-0.068 Sum_probs=76.3
Q ss_pred hhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 290 FLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 290 ~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+..++....|..|+..++.......+ .-++.+-..+. -.++.+....+.+++.+... +-..+.+
T Consensus 63 L~~s~~~E~r~la~~~l~~~~~~~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~--------~~~~~~~ 127 (220)
T 2b6c_A 63 YYQKTEREYQYVAIDLALQNVQRFSL-------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL--------HLTELPT 127 (220)
T ss_dssp HHTSSSHHHHHHHHHHHHHTGGGCCH-------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH--------SGGGHHH
T ss_pred HHcCchhHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--------ChHHHHH
Confidence 33445566777777777655432211 22333333332 45777777666656655432 2223455
Q ss_pred HHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 369 ALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 369 ~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
.+..-..+ ++.-+|..|+.++-... -..+.+.+++.+...+.+....|+.++-++|..++..-++.
T Consensus 128 ~i~~W~~s-~~~w~rR~ai~~~l~~~-------~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 128 IFALFYGA-ENFWNRRVALNLQLMLK-------EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp HHHHHTTC-SSHHHHHHHHHTTTTCG-------GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 66677777 77888777766442111 12455666666666778888888888888887777554443
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.53 E-value=33 Score=30.06 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=59.8
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhCC------CCHHHHHHHHHHHHHHHH
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLGS------NNFDLRIAALEATVNFIM 213 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~------~~~~vr~~a~~~l~~l~~ 213 (927)
.+.+..|...+++.++.+...|+.+|..+...++..|...+ ..++.-+.+.+.. .+..|+..++..+..+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~- 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT- 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH-
Confidence 35667777788899999999999999999999888775433 4566666666653 37899999999999999
Q ss_pred hhCCC
Q 002400 214 NCLPS 218 (927)
Q Consensus 214 ~~~~~ 218 (927)
..|.+
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 77753
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.36 E-value=21 Score=34.07 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhC
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLG 194 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~ 194 (927)
+...--.+++.|. .. + ..=.+.+..|...+++.++++...|+.+|..+....+..|...+ ..++..+.+.+.
T Consensus 25 dw~~ileicD~I~----~~-~-~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~ 98 (226)
T 3zyq_A 25 DWESILQICDLIR----QG-D-TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK 98 (226)
T ss_dssp CHHHHHHHHHHHH----TT-S-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh----CC-C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc
Confidence 4444455555553 11 1 22357788888889999999999999999999998887654322 233333333333
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 195 -SNNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 195 -~~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
..+..|+..++..+..+. ..+.+.
T Consensus 99 ~~~~~~Vk~kil~li~~W~-~~f~~~ 123 (226)
T 3zyq_A 99 RQVEVNVRNKILYLIQAWA-HAFRNE 123 (226)
T ss_dssp HCCCHHHHHHHHHHHHHHH-HHTTTC
T ss_pred cCCCHHHHHHHHHHHHHHH-HHhCCC
Confidence 347899999999999998 777543
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.53 E-value=40 Score=31.93 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhC
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLG 194 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~ 194 (927)
+...--.+++.|. .. + ..=.+.+..|...+++.++.+...|+.+|..+....+..|...+ ..++..+...+.
T Consensus 22 dw~~~leicd~i~----~~-~-~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~ 95 (220)
T 1dvp_A 22 DWPSILLICDEIN----QK-D-VTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLE 95 (220)
T ss_dssp CHHHHHHHHHHHH----TT-S-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhc----CC-C-cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhc
Confidence 5555455555553 11 1 22346777888888999999999999999999999887664321 223333333333
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhCCC
Q 002400 195 -SNNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 195 -~~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
..+..||..++..+..+. ..+.+
T Consensus 96 ~~~~~~Vk~kil~li~~W~-~~f~~ 119 (220)
T 1dvp_A 96 STPHENVRQKMLELVQTWA-YAFRS 119 (220)
T ss_dssp HCSCHHHHHHHHHHHHHHH-HHTTT
T ss_pred CCCcHHHHHHHHHHHHHHH-HHhcc
Confidence 347899999999999998 66643
No 154
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=74.33 E-value=28 Score=30.00 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCC-----------CCchHHHHHHH
Q 002400 320 NLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDF-----------QNPRVQAHAAS 388 (927)
Q Consensus 320 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~-----------~~~~v~~~a~~ 388 (927)
.+..+++.|.+.|++.++.|..-|+.+|..++..-.+.+.......+ . .++.+.+. ....||..|-.
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~-~-~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS-V-AVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT-H-HHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH-H-HHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 45789999999999999999999999999998876666533222222 2 23333211 12468988888
Q ss_pred HHHHhHhc
Q 002400 389 AVLNFSEN 396 (927)
Q Consensus 389 al~~l~~~ 396 (927)
++..+.+.
T Consensus 124 l~~ll~d~ 131 (140)
T 1vdy_A 124 TISAIFSE 131 (140)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCc
Confidence 88777644
No 155
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.23 E-value=37 Score=29.74 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=58.3
Q ss_pred cchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhCC------CCHHHHHHHHHHHHHHHH
Q 002400 142 PELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLGS------NNFDLRIAALEATVNFIM 213 (927)
Q Consensus 142 ~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~~------~~~~vr~~a~~~l~~l~~ 213 (927)
.+.+..|...+++.++.+...|+.+|..+...++..|...+ ..++.-+.+.+.+ .+..|+...+..+..+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~- 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT- 125 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH-
Confidence 35677777888899999999999999999999888765432 3445555555542 47899999999999999
Q ss_pred hhCCC
Q 002400 214 NCLPS 218 (927)
Q Consensus 214 ~~~~~ 218 (927)
..|++
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 77754
No 156
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=73.54 E-value=46 Score=29.97 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHHHHHhhhC
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHG--DTLHEVFSKFLG 194 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~~l~~~l~ 194 (927)
+...--.+|+.|.. . + ..=.+.+..|...+++.++.+...|+.+|..+...++..|...+ ..++.-+.+.+.
T Consensus 30 Dw~~ileicD~I~~----~-~-~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~ 103 (171)
T 1juq_A 30 DWEYIIGFCDQINK----E-L-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVS 103 (171)
T ss_dssp CHHHHHHHHHHHHH----S-T-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHc----C-C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhc
Confidence 44444455555542 1 1 11235677777888999999999999999999999988765432 344444555543
Q ss_pred ------CCCHHHHHHHHHHHHHHHHhhCCC
Q 002400 195 ------SNNFDLRIAALEATVNFIMNCLPS 218 (927)
Q Consensus 195 ------~~~~~vr~~a~~~l~~l~~~~~~~ 218 (927)
..+..||..++..+..+. ..+.+
T Consensus 104 ~k~~~~~~~~~Vk~kil~li~~W~-~~f~~ 132 (171)
T 1juq_A 104 PKYLGDRVSEKVKTKVIELLYSWT-MALPE 132 (171)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHH-HHCTT
T ss_pred cccCCCCCCHHHHHHHHHHHHHHH-HHcCC
Confidence 137899999999999999 77743
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=70.15 E-value=27 Score=30.69 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=56.0
Q ss_pred HHHHHHHHhccCC-CCHHHHHHHHHHHHHhHhhhchhHHHHhH-hhHHHH-HHHhccCC--CCchHHHHHHHHHHHhHhc
Q 002400 322 DQVVSMVLNSFQD-PHPRVRWAAINAIGQLSTDLGPELQTQFH-HRLLPA-LVGAMDDF--QNPRVQAHAASAVLNFSEN 396 (927)
Q Consensus 322 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~il~~-ll~~l~~~--~~~~v~~~a~~al~~l~~~ 396 (927)
...+..+.+.++. +++.+...|+..+..+..++|..+..... ..++.. +.+.+.+. ....|+..+...+......
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3567778888874 68888888999999999999987743332 234443 44444431 2347999999999999988
Q ss_pred CCCc
Q 002400 397 CTPD 400 (927)
Q Consensus 397 ~~~~ 400 (927)
++.+
T Consensus 132 F~~~ 135 (152)
T 3rru_A 132 FPGG 135 (152)
T ss_dssp CSSS
T ss_pred hCCC
Confidence 7643
No 158
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=67.12 E-value=26 Score=29.99 Aligned_cols=86 Identities=8% Similarity=0.052 Sum_probs=56.0
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc
Q 002400 321 LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 321 l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 400 (927)
+..-+...+..|+.....++..+.||+... .+...++..+.+.+.. ..+.-|....+.+..++..+...
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~----------~~a~~Iv~~i~~~l~~-~~~~~KL~~LYL~ndIl~ns~~~ 74 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIENK----------KHHSTIVYHWMKWLRR-SAYPHRLNLFYLANDVIQNCKRK 74 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHTG----------GGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHhccc
Confidence 344555666678877788888888888642 3345667777777776 66777888999999999887643
Q ss_pred cccCchHHHHHHHHHHh
Q 002400 401 ILTPYLDGIVSKLLVLL 417 (927)
Q Consensus 401 ~~~~~l~~l~~~L~~~l 417 (927)
....|.+.+-+.+...+
T Consensus 75 ~~~~f~~~f~~~l~~~~ 91 (132)
T 4flb_A 75 NAIIFRESFADVLPEAA 91 (132)
T ss_dssp TCTHHHHHHHTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 22234343333333333
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=63.80 E-value=8.3 Score=36.95 Aligned_cols=98 Identities=9% Similarity=0.183 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhH--HhHHHHHHHHccCCChhHHhhHhHHHHHHHhhc-C-----CCcHH--HHHHH
Q 002400 707 AEERRIAICIFDDVMEHCREAALKYY--DTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFG-G-----SVFKP--LVGEA 776 (927)
Q Consensus 707 ~~~r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~-~-----~~~~~--~~~~i 776 (927)
...|..+++.+|.+++.-..++..|+ .+++|..++.+...+.-.|..|.+-+..+.... | ..... .+..+
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~v 195 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMI 195 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHH
Confidence 45789999999999998877777764 489999999999999899999999888877542 1 11111 12334
Q ss_pred HHHHHHhhc-CCCCCCchhhhHHHHHHHHHHHHHh
Q 002400 777 LSRLDFVIR-HPNALHSDNVMAYDNAVSALGKICQ 810 (927)
Q Consensus 777 l~~L~~~l~-~~~~~~~~~~~~~~na~~al~~l~~ 810 (927)
+..++.-+. +| +....+.++.|--|+..
T Consensus 196 L~~mV~~l~~~p------s~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 196 LGKMVLQLSKEP------SARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHHHHHTTTSC------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC------ChHHHHHHHHHHHHHhc
Confidence 444443332 23 34466777777777655
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=62.41 E-value=78 Score=27.94 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhhhhhHHhHH--HHHHH-HHHHHhcccCcchhhHHHHHHHHHHHHH
Q 002400 406 LDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQGQFQKYYD--AVMPY-LKAILVNANDKSNRMLRAKSMECISLVG 481 (927)
Q Consensus 406 l~~l~~~L~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~--~i~~~-L~~~l~~~~~~~~~~lr~~a~~~l~~l~ 481 (927)
....+..+.+-++ +.++.++..|+..+..++..+|..|...+. .++.. |...+....+ ....+|.++++.+..-+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~-~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNN-PPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHH
Confidence 3566777888887 478899999999999999999988765332 34554 4555533222 23578889999888888
Q ss_pred HhhC
Q 002400 482 MAVG 485 (927)
Q Consensus 482 ~~~~ 485 (927)
.+.+
T Consensus 130 ~~f~ 133 (157)
T 1elk_A 130 DAFR 133 (157)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 7765
No 161
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=59.98 E-value=1.2e+02 Score=28.83 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHH
Q 002400 33 SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQL 112 (927)
Q Consensus 33 d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l 112 (927)
.+..|+-|-+..++........+. .++..+-.+..-+.|.+|..+++... ..++++....+.. ++.
T Consensus 40 ~P~lR~laK~~~k~~~~~~~~~~~-~~~~~L~~~~~~E~r~~ai~~l~~~~----------k~~~~~~l~~~~~-~l~-- 105 (232)
T 3jxy_A 40 TPERRQLLKDIIQIHTLPDQKDFQ-IIIRELWDLPEREFQAAALDIMQKYK----------KHINETHIPFLEE-LIV-- 105 (232)
T ss_dssp HHHHHHHHHHHHHHHCCCCGGGHH-HHHHHHHTSSBHHHHHHHHHHHHHTG----------GGCCGGGHHHHHH-HHT--
T ss_pred hHHHHHHHHHHHHhccccchhhHH-HHHHHHhcCcHHHHHHHHHHHHHHHH----------HhCCHHHHHHHHH-HHc--
Confidence 455666666665654331122222 23444434567789999988887432 2244554444432 222
Q ss_pred hhcchhhHHHHHH-HHHHHHHhccCCCCCccc-hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHH
Q 002400 113 QNETNKSIIKKIC-DAVSELAASVLPDGDWPE-LIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFS 190 (927)
Q Consensus 113 ~~~~~~~vr~~~~-~~i~~ia~~~~~~~~w~~-ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~ 190 (927)
.-.+..+...+| .+++.+... . |+ +.+.+...+.|++.-+|+.|+..+-.. . .......+++.+.
T Consensus 106 -~~~nWd~~D~~a~~~~g~~~~~-~-----p~~~~~~l~~W~~s~~~w~rR~ai~~~l~~---~---~~~d~~~~~~~i~ 172 (232)
T 3jxy_A 106 -TKSWWDSVDSIVPTFLGDIFLK-H-----PELISAYIPKWIASDNIWLQRAAILFQLKY---K---QKMDEELLFWIIG 172 (232)
T ss_dssp -SSCCHHHHHHHTTTHHHHHHHH-C-----GGGGGGTHHHHHHSSCHHHHHHHHHTTTTC---G---GGCCHHHHHHHHH
T ss_pred -cCCChHHHHHhhHHHHHHHHHH-C-----HHHHHHHHHHHhcCCchHHHHHHHHHHHHH---H---hCCCHHHHHHHHH
Confidence 223666665554 556666554 2 33 566777888999998888887665221 1 1223445677777
Q ss_pred hhhCCCCHHHHHHHHHHHHHHH
Q 002400 191 KFLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 191 ~~l~~~~~~vr~~a~~~l~~l~ 212 (927)
..+.|++.-|+.+.-.+|..+.
T Consensus 173 ~~~~d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 173 QLHSSKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999888888877
No 162
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=54.77 E-value=65 Score=27.96 Aligned_cols=90 Identities=8% Similarity=0.043 Sum_probs=53.5
Q ss_pred ccC-CCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHH
Q 002400 331 SFQ-DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGI 409 (927)
Q Consensus 331 ~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l 409 (927)
.|. +..+.+...+.+|+... .+...++..+.+.+.. ..+.-+-.+.+.+..++++++.....-+-..+
T Consensus 18 ~L~~nSk~~I~~LT~~a~~~~----------~~a~~Iv~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l 86 (144)
T 1sz9_A 18 ELTFNSRPIITTLTKLAEENI----------SCAQYFVDAIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNL 86 (144)
T ss_dssp TCSSCCHHHHHHHHHHHHHTG----------GGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTH
T ss_pred HhccccHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344 44455555555554421 3556777777777776 67888899999999999998754222222234
Q ss_pred HHHHHHHhcCCChhHHHHHHHH
Q 002400 410 VSKLLVLLQNGKQMVQEGALTA 431 (927)
Q Consensus 410 ~~~L~~~l~~~~~~v~~~a~~a 431 (927)
.+.+.......+...|......
T Consensus 87 ~~~f~~~~~~~d~~~r~k~~rL 108 (144)
T 1sz9_A 87 FNLYKRTYLLVDNTTRTKLINM 108 (144)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 4444444444555555544333
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=53.83 E-value=1.2e+02 Score=30.38 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHhccCC-CCHHHHHHHHHHHHHhHhhh-chhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCc
Q 002400 323 QVVSMVLNSFQD-PHPRVRWAAINAIGQLSTDL-GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPD 400 (927)
Q Consensus 323 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 400 (927)
.++..+...+.+ ..|..+-.+++++..+...- +..........+++.+...+.+ ++..+|.++...+-+++-.....
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhc
Confidence 455555555543 35666777777777765532 2222234567788888887777 78999999999888887442211
Q ss_pred cccCchHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHH
Q 002400 401 ILTPYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADS 438 (927)
Q Consensus 401 ~~~~~l~~l~~~L~~~l~~-~~~~v~~~a~~al~~l~~~ 438 (927)
.-.+-...++..+...++. .+.+..-.++.++|.++..
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 0011223344545555543 3556677778888888743
No 164
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=49.83 E-value=89 Score=29.75 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=59.1
Q ss_pred CCCHHHHHHHH-HHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHH
Q 002400 334 DPHPRVRWAAI-NAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSK 412 (927)
Q Consensus 334 d~~~~vr~~a~-~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~ 412 (927)
..++.+....+ .++|.+... +-..+.+.+..-..+ ++.-+|..|+..+-... .......+...
T Consensus 107 ~~nWd~~D~~a~~~~g~~~~~--------~p~~~~~~l~~W~~s-~~~w~rR~ai~~~l~~~-------~~~d~~~~~~~ 170 (232)
T 3jxy_A 107 KSWWDSVDSIVPTFLGDIFLK--------HPELISAYIPKWIAS-DNIWLQRAAILFQLKYK-------QKMDEELLFWI 170 (232)
T ss_dssp SCCHHHHHHHTTTHHHHHHHH--------CGGGGGGTHHHHHHS-SCHHHHHHHHHTTTTCG-------GGCCHHHHHHH
T ss_pred CCChHHHHHhhHHHHHHHHHH--------CHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH-------hCCCHHHHHHH
Confidence 45777766543 455554432 111244555666777 78888887775542221 12234455666
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhH
Q 002400 413 LLVLLQNGKQMVQEGALTALASVADSSQGQFQKYY 447 (927)
Q Consensus 413 L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 447 (927)
+...+.+....|+..+-++|..+....++...+|+
T Consensus 171 i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 171 IGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 66778888899999888888888766555444443
No 165
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=47.14 E-value=61 Score=27.69 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=51.4
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh---
Q 002400 365 RLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQG--- 441 (927)
Q Consensus 365 ~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~--- 441 (927)
+.+...+..|+. ....++..+.+++... .+...+++.+.+.+...++.-|-..+-.+..++..+..
T Consensus 7 ~~l~~~L~~L~~-s~~sI~~~s~w~l~~~----------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 7 SALEKKLSELSN-SQQSVQTLSLWLIHHR----------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp HHHHHHHHHCCS-STTHHHHHHHHHHHTG----------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHccc-cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 345555667776 6777888777876532 35667777777777776666777888888888776643
Q ss_pred hhHHhHHHHHHHH
Q 002400 442 QFQKYYDAVMPYL 454 (927)
Q Consensus 442 ~~~~~~~~i~~~L 454 (927)
.|.+.+...+|.+
T Consensus 76 ~y~~~f~~~l~~~ 88 (135)
T 4fu3_A 76 EFTREFESVLVDA 88 (135)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=44.41 E-value=1.7e+02 Score=29.25 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHhhhch--HHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHh
Q 002400 296 WQKHHAVLIALAQIAEGCS--KVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGA 373 (927)
Q Consensus 296 ~~~r~aal~al~~i~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~ 373 (927)
...+..++.++..+-.+.. ..+..+...+++.+...+.+++..+|-++...+-.++-........+-...++..+...
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~i 241 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTI 241 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 3345555555555544322 23445667888888888888899999999888887776542211011222344444444
Q ss_pred ccCCCCchHHHHHHHHHHHhHh
Q 002400 374 MDDFQNPRVQAHAASAVLNFSE 395 (927)
Q Consensus 374 l~~~~~~~v~~~a~~al~~l~~ 395 (927)
+....+.+..-++..||++++.
T Consensus 242 l~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 242 LEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHHHHHHHHHHHHHh
Confidence 4433456777777778887774
No 167
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=41.10 E-value=2.3e+02 Score=26.53 Aligned_cols=153 Identities=11% Similarity=0.011 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccCHhHHHHHHHHHHHHH
Q 002400 33 SNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQL 112 (927)
Q Consensus 33 d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~~~~~~~ik~~Ll~~l 112 (927)
.+..|+-|-+..+.... .|...-..++.-+-.+..-+.|.+|+.++...... ++++....+.. + +
T Consensus 34 ~P~lR~laK~~~k~~~~-~~~~~~~~~~~~L~~s~~~E~r~la~~~l~~~~~~----------~~~~~l~~~~~-~---l 98 (220)
T 2b6c_A 34 APERQALSKQLLKESHT-WPKEKLCQEIEAYYQKTEREYQYVAIDLALQNVQR----------FSLEEVVAFKA-Y---V 98 (220)
T ss_dssp HHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGG----------CCHHHHHHGGG-G---T
T ss_pred hHHHHHHHHHHHHHhcc-CcccchHHHHHHHHcCchhHHHHHHHHHHHHHHhh----------CCHHHHHHHHH-H---h
Confidence 45667666665544311 12111113334344467789999999998755322 23322221111 1 1
Q ss_pred hhcchhhHHHHHHHHHHHHHhccCCCCCccc-hHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh
Q 002400 113 QNETNKSIIKKICDAVSELAASVLPDGDWPE-LIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSK 191 (927)
Q Consensus 113 ~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~-ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~ 191 (927)
..-.+..+.-.+|.+++.+... .|+ +.+.+...+.|++.-+|+.|+..+-.-.+ ..+.+.+++++..
T Consensus 99 ~~~~nWd~~D~~a~~~~~~~~~------~~~~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~ 166 (220)
T 2b6c_A 99 PQKAWWDSVDAWRKFFGSWVAL------HLTELPTIFALFYGAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIY 166 (220)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHH------SGGGHHHHHHHHTTCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH------ChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHH
Confidence 1123666666777667776543 244 66788899999999888888775521111 1345667888888
Q ss_pred hhCCCCHHHHHHHHHHHHHHH
Q 002400 192 FLGSNNFDLRIAALEATVNFI 212 (927)
Q Consensus 192 ~l~~~~~~vr~~a~~~l~~l~ 212 (927)
.+.|++.-|+.+.-.+|..+.
T Consensus 167 ~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 167 DRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp TTTCCCHHHHHHHHHHHHHHT
T ss_pred hCCChHHHHHHHHHHHHHHHH
Confidence 899999999999888888877
No 168
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=39.72 E-value=1.8e+02 Score=24.98 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=48.3
Q ss_pred cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhccc
Q 002400 15 LGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTR 85 (927)
Q Consensus 15 ~~~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~ 85 (927)
|+.+.+.+...|..+. +..+.++.+..++-.-.+ .....+..+.+.+.....+.-+.++.++|-|-|-.
T Consensus 1 m~fs~~~l~~kL~~L~-~sq~sIq~~s~W~l~h~~-~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlq 69 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLE-DSQESISSASKWLLLQYR-DAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQ 69 (142)
T ss_dssp -CCCHHHHHHHHHTCC-SCHHHHHHHHHHHHTCGG-GHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc-ccHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHH
Confidence 7788899999998876 566677777777766444 23446677777776654466777888887776644
No 169
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=39.51 E-value=1.2e+02 Score=26.57 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcC-CChHHHHHHHHHHHHhhhhhHHHHHHhH--HHHHH-HHHhh
Q 002400 117 NKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVT-FNDKIQESALLILSRMSQFVSEVLIAHG--DTLHE-VFSKF 192 (927)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~l~~~~--~~l~~-~l~~~ 192 (927)
+...--.+|+.|.. . + ..=.+.+..|...+++ .++.+...|+.+|..+...++..|...+ ..++. .+.+.
T Consensus 33 Dw~~ileicD~In~----~-~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl 106 (152)
T 3rru_A 33 DWGQFMHICDIINT----T-Q-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKL 106 (152)
T ss_dssp CHHHHHHHHHHHHH----S-T-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGG
T ss_pred cHHHHHHHHHHHhC----C-C-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHH
Confidence 44444455655542 1 1 1224566777777764 5777777899999999999888765543 34554 34455
Q ss_pred hCC---CCHHHHHHHHHHHHHHHHhhCCCc
Q 002400 193 LGS---NNFDLRIAALEATVNFIMNCLPSL 219 (927)
Q Consensus 193 l~~---~~~~vr~~a~~~l~~l~~~~~~~~ 219 (927)
+.. ....|+..++..+..+. ..|.+.
T Consensus 107 ~~~~~~~~~~Vk~kil~li~~Wa-~~F~~~ 135 (152)
T 3rru_A 107 LNPRYNLPLDIQNRILNFIKTWS-QGFPGG 135 (152)
T ss_dssp GSGGGCCCHHHHHHHHHHHHHHH-TCCSSS
T ss_pred hcCCCCCcHHHHHHHHHHHHHHH-HHhCCC
Confidence 543 25689999999999999 777543
No 170
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=36.10 E-value=41 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhh
Q 002400 319 KNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 319 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 353 (927)
..++.+++.+...+.|++..|+.+..|+|..++..
T Consensus 147 ~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 147 SKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 56778888888899999999999999999988764
No 171
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=35.34 E-value=2.2e+02 Score=24.60 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhh
Q 002400 371 VGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQ 442 (927)
Q Consensus 371 l~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 442 (927)
++.|.+ ..+.+-......|..++.... .+...++..+.+.+....+.-|-.++-.+-+++..++..
T Consensus 11 L~~L~~-~k~~~S~~~I~~LT~~a~~~~-----~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k 76 (145)
T 3d9j_A 11 LYSLND-YKPPISKAKMTQITKAAIKAI-----KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQ 76 (145)
T ss_dssp HHGGGG-SCSSCCHHHHHHHHHHHHHTG-----GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhh
Confidence 344544 222344445555666655432 466788888888888888888888999999999888873
No 172
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=33.24 E-value=2.9e+02 Score=31.70 Aligned_cols=91 Identities=9% Similarity=0.169 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH--hhhhhHHhHHHHHHHHHHHHhcccCcchhhHHH-----HHHHHH
Q 002400 405 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADS--SQGQFQKYYDAVMPYLKAILVNANDKSNRMLRA-----KSMECI 477 (927)
Q Consensus 405 ~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~--~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~-----~a~~~l 477 (927)
.+..++..+...++..++..-...+..|+.++.+ +.+ ..+++.|..++....+......|+ .++.++
T Consensus 85 lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~------~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~L 158 (771)
T 1h2v_C 85 FVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA------PSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSL 158 (771)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH------HHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecH------HHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHH
Confidence 4555666666677777776556666777777653 221 234444444444433322222222 245555
Q ss_pred HHHHHhhCcchhhhhHHHHHHHHHH
Q 002400 478 SLVGMAVGKDKFRDDAKQVMEVLMS 502 (927)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~i~~~l~~ 502 (927)
-.++..+. +.....+..+++.+-.
T Consensus 159 p~~G~~L~-e~~~~~l~~lle~~~~ 182 (771)
T 1h2v_C 159 PWVGKELY-EKKDAEMDRIFANTES 182 (771)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCHHHHHHHHHHHHH
Confidence 55555443 3344445566665544
No 173
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=30.29 E-value=2.7e+02 Score=24.05 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHHHHHHHhhhh-------hhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHH
Q 002400 706 TAEERRIAICIFDDVMEHCREA-------ALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALS 778 (927)
Q Consensus 706 ~~~~r~~a~~~l~~l~~~~~~~-------~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~ 778 (927)
.++.|..+++.+.++++..+.. +.+.+...++.++..+-..++..|......++..-+. ..|. ++++.
T Consensus 55 ~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~r--~vF~---~~~l~ 129 (145)
T 3d9j_A 55 KPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN--NVFK---SEIIQ 129 (145)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHT--TSSC---HHHHH
T ss_pred CccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCC--CCCC---HHHHH
Confidence 4778999999999999999873 3343333333333333233477887777776666543 2222 24455
Q ss_pred HHHHhhcC
Q 002400 779 RLDFVIRH 786 (927)
Q Consensus 779 ~L~~~l~~ 786 (927)
.+...+..
T Consensus 130 ~l~~~l~~ 137 (145)
T 3d9j_A 130 PLLDMAAA 137 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 55544443
No 174
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=29.09 E-value=3.6e+02 Score=26.69 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=45.4
Q ss_pred CccchHHHHHHHhcCC------ChHHHHHHHHHHHHhhhhh--HHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 002400 140 DWPELIPFIFQCLVTF------NDKIQESALLILSRMSQFV--SEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNF 211 (927)
Q Consensus 140 ~w~~ll~~l~~~l~s~------~~~~r~~al~~l~~l~~~~--~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l 211 (927)
.+..-+..+..+++++ +...-+.++..|..++-.+ +..+..+-..++.-+. +....++.+|..|.+.++..
T Consensus 19 eFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ss 97 (315)
T 3qml_C 19 EFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSC 97 (315)
T ss_dssp TTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHH
Confidence 4555556666666654 3445677777777777553 3344432223333333 33345778999999999999
Q ss_pred HHhh
Q 002400 212 IMNC 215 (927)
Q Consensus 212 ~~~~ 215 (927)
+ ++
T Consensus 98 L-RN 100 (315)
T 3qml_C 98 L-RN 100 (315)
T ss_dssp H-TT
T ss_pred H-cc
Confidence 9 54
No 175
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=28.48 E-value=2.7e+02 Score=23.50 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=61.6
Q ss_pred chHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC--Cch
Q 002400 143 ELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP--SLG 220 (927)
Q Consensus 143 ~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~ 220 (927)
+.+...++.+++........+..++... .+.+.++..+.+.+....+.-|...+-.+..++ .+.. .+.
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~---------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl-~ns~~~~~~ 76 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHR---------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVI-QNSKRKGPE 76 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHH-HHHTTTCSH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH-HHHHhcCHH
Confidence 3455555556655555555566665532 134456666666666555567778887777777 3321 122
Q ss_pred hHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002400 221 EKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIE 257 (927)
Q Consensus 221 ~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l~~ 257 (927)
-...|...+|.++..+...............++.|.+
T Consensus 77 y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 77 FTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 3456777778777766654444444455667778865
No 176
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=27.54 E-value=97 Score=20.87 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhhcC
Q 002400 887 ASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS 927 (927)
Q Consensus 887 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 927 (927)
.+++++++..+.+. +.+|+..-++||++|.|
T Consensus 9 v~RaiELle~lq~s----------gevp~~KL~aLq~VLqS 39 (53)
T 1zl8_A 9 VQRILELMEHVQKT----------GEVNNAKLASLQQVLQS 39 (53)
T ss_dssp HHHHHHHHHHHGGG----------SSSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHc----------CCCCcHHHHHHHHHHHH
Confidence 45667777776533 44677777778877764
No 177
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.62 E-value=1.3e+02 Score=31.40 Aligned_cols=99 Identities=7% Similarity=0.124 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccc--cCHhHHHHHHHHHHHHHh-------hcchhhHHHHHHHHHHHHHhccC
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTR--LAPSTQANLKSVLLVQLQ-------NETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~--l~~~~~~~ik~~Ll~~l~-------~~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
+.++..+.++..+|-|++... .|.. +..+ .++..+++.+. ...++.+|.+++.++-.++....
T Consensus 273 ~~~~an~MltlR~laNlF~~~-----~~g~~ll~~~---~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~ 344 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNE-----NWGVKLLESN---QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT 344 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT-----TTHHHHHTSH---HHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhcCCc-----chHHHHhhCc---hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHh
Confidence 557889999999999998765 2421 2211 24555555442 12377899999999888887644
Q ss_pred CCCCccchHHHHHHHhc---------CCChHHHHHHHHHHHHhhh
Q 002400 137 PDGDWPELIPFIFQCLV---------TFNDKIQESALLILSRMSQ 172 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~---------s~~~~~r~~al~~l~~l~~ 172 (927)
....-.+++..+.+++. ..+.+...+++.+|+.+..
T Consensus 345 ~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 345 KGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 21222577778877776 2467788888999888874
No 178
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=24.16 E-value=6e+02 Score=26.13 Aligned_cols=155 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred chhhhhCCcchhHHHHHHHHHHHHhhhch-HHHHhhHHHHHHHHHhccC-----------CCCHHHHHHHHHHHHHhHhh
Q 002400 286 VFPGFLAAPEWQKHHAVLIALAQIAEGCS-KVMIKNLDQVVSMVLNSFQ-----------DPHPRVRWAAINAIGQLSTD 353 (927)
Q Consensus 286 ~i~~~l~~~~~~~r~aal~al~~i~~~~~-~~~~~~l~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~~~~~ 353 (927)
++..+..+.........+..|..-....+ ..+......=+..++..|. +.+......++.|+..++..
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~ 150 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 150 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHHHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc
Q ss_pred hchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCcc-ccCchHHH-----------HHHHHHHhcC-C
Q 002400 354 LGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI-LTPYLDGI-----------VSKLLVLLQN-G 420 (927)
Q Consensus 354 ~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-~~~~l~~l-----------~~~L~~~l~~-~ 420 (927)
-..--.---.+..+..+..++.. +.+.++..+...|..+|...+++. ....+..+ +..++..+.+ .
T Consensus 151 ~~G~~~vl~~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~ 229 (383)
T 3eg5_B 151 KFGIKTMLETEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 229 (383)
T ss_dssp HHHHHHHHTCSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred hhhHHHHHcChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccC
Q ss_pred ChhHHHHHHHHHHHHHHHhhh
Q 002400 421 KQMVQEGALTALASVADSSQG 441 (927)
Q Consensus 421 ~~~v~~~a~~al~~l~~~~~~ 441 (927)
+...+..++..|..++...++
T Consensus 230 ~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 230 SIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHHcCCCC
No 179
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.16 E-value=1e+02 Score=31.48 Aligned_cols=99 Identities=7% Similarity=0.120 Sum_probs=66.1
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccc--cCHhHHHHHHHHHHHHHh-------hcchhhHHHHHHHHHHHHHhccC
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTR--LAPSTQANLKSVLLVQLQ-------NETNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~--l~~~~~~~ik~~Ll~~l~-------~~~~~~vr~~~~~~i~~ia~~~~ 136 (927)
+.++..+.++..+|-|++... .|.. +.. +.++..+++.+. ...++.+|.+++..+-.++....
T Consensus 210 ~~~~~n~MltlR~laNlF~~~-----~~g~~ll~~---~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~ 281 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNE-----NWGVKLLES---NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT 281 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT-----TTHHHHHTS---HHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhccCc-----chHHHHHhc---chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHh
Confidence 557889999999999998765 2421 211 113445555442 12377899999999888887644
Q ss_pred CCCCccchHHHHHHHhc---------CCChHHHHHHHHHHHHhhh
Q 002400 137 PDGDWPELIPFIFQCLV---------TFNDKIQESALLILSRMSQ 172 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~---------s~~~~~r~~al~~l~~l~~ 172 (927)
....-.+++..+.+++. ..+.+...+++.+|+.+..
T Consensus 282 ~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 282 KGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 21222577778887776 2477788889999998874
No 180
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.64 E-value=1.6e+02 Score=28.45 Aligned_cols=99 Identities=8% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCChhHHHHHHHHHHhhcccCccccccccc--cCHhHHHHHHHHHHHHHh----hc---chhhHHHHHHHHHHHHHhccC
Q 002400 66 SSLPECRAMSAILLRKHLTRDDSTSFIFTR--LAPSTQANLKSVLLVQLQ----NE---TNKSIIKKICDAVSELAASVL 136 (927)
Q Consensus 66 ~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~--l~~~~~~~ik~~Ll~~l~----~~---~~~~vr~~~~~~i~~ia~~~~ 136 (927)
+.++..+.++.-++-|.+... .|.. +..+ .++..+++.+. +. +++.+|.+++..+-.++....
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~-----~~g~~l~~~~---~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~ 172 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNE-----NWGVKLLESN---QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT 172 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT-----TTHHHHHTSH---HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHcccCC-----chHHHHHhcc---hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh
Confidence 456889999999999999775 1322 2211 23444555442 11 378899999999988887654
Q ss_pred CCCCccchHHHHHHHhcC---------CChHHHHHHHHHHHHhhh
Q 002400 137 PDGDWPELIPFIFQCLVT---------FNDKIQESALLILSRMSQ 172 (927)
Q Consensus 137 ~~~~w~~ll~~l~~~l~s---------~~~~~r~~al~~l~~l~~ 172 (927)
....-.++...+.+++.. .+.+...+++.+++.+..
T Consensus 173 ~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 173 KGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 322235677777776652 256677788888887774
No 181
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=23.32 E-value=2.7e+02 Score=24.23 Aligned_cols=42 Identities=2% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhh
Q 002400 884 EQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSIL 925 (927)
Q Consensus 884 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 925 (927)
+.+|.....++-.+..++....+..++++|..+.+..|.+++
T Consensus 70 ~~~K~~~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYi 111 (152)
T 3dwl_G 70 QEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFI 111 (152)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHH
Confidence 677877777777777777766799999999999999998775
No 182
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.08 E-value=4.2e+02 Score=29.30 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCccccccccccC
Q 002400 21 HFETLISNL--MSSSNEHRSHAEVLLSH-LRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLA 97 (927)
Q Consensus 21 ~l~~~L~~~--~s~d~~~r~~Ae~~l~~-~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l~ 97 (927)
.+.+.|..+ .+|+...|+.|...++. +.+.++++=...|-.++.++..+.++-.+...+|+.|... |....
T Consensus 365 ~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~e~R~~iL~~LL~~~~~~~v~~~lI~~~KdeI~~a------l~~~~ 438 (596)
T 4f52_E 365 TVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQGKYTLFRCLLNTSNHSGVEAFIIQNIKNQIDMS------LKRTR 438 (596)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT------CCC--
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH------HhcCC
Q ss_pred HhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 002400 98 PSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMS 171 (927)
Q Consensus 98 ~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~ 171 (927)
. ++...-..+...+..+.. .|.+.+++++ ...+....|+.++..+.
T Consensus 439 ~-----------------~~~F~~~~l~~ll~~vl~--lp~g~~tDL~---------~~~d~I~aaLNLlr~Ll 484 (596)
T 4f52_E 439 N-----------------NKWFTGPQLISLLDLVLF--LPEGAETDLL---------QNSDRIMASLNLLRYLV 484 (596)
T ss_dssp -------------------CTTTSHHHHHHHHHHSC--CTTTTTCCTT---------TSHHHHHHHHHHHHHHH
T ss_pred C-----------------CCccccHHHHHHHHHHhc--CCCCCCCchh---------hhhHHHHHHHHHHHHHH
No 183
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=23.06 E-value=3.1e+02 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhh
Q 002400 883 TEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSIL 925 (927)
Q Consensus 883 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 925 (927)
++++|.....++-.+...+....+..++++|+++++..|.+++
T Consensus 68 ~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYi 110 (151)
T 1k8k_G 68 SQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYI 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHH
Confidence 4567777776666666677766699999999999999998875
No 184
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=22.70 E-value=3.5e+02 Score=22.92 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=44.9
Q ss_pred hhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHH
Q 002400 289 GFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLP 368 (927)
Q Consensus 289 ~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~ 368 (927)
+.++|.||.........|... -..++|.+...|+..+..=. .|++..+...+.. .....+.+
T Consensus 38 ~WLQD~NWPvA~~i~~~L~~~-----------~~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~----~~~~~l~~ 99 (134)
T 3ut4_A 38 KWLQDYNWPIAKDILPVVVLH-----------QSIAMPHILTILQGNDIMWK---YWVIKLMIPYLIY----PNKQLVKS 99 (134)
T ss_dssp GGGSCTTSTTHHHHHHHHHHT-----------HHHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCH----HHHHHHHH
T ss_pred HHHhcCCCccHHHHHHHHHHc-----------cHhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCH----HHHHHHHH
Confidence 777889998876666555432 22344444444433333221 3455555544433 23445555
Q ss_pred HHHHhccCC----CCchHHHHHHHHHHHh
Q 002400 369 ALVGAMDDF----QNPRVQAHAASAVLNF 393 (927)
Q Consensus 369 ~ll~~l~~~----~~~~v~~~a~~al~~l 393 (927)
.+.+..... ....|...|-..|..+
T Consensus 100 eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 100 ELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 555555441 1335666666666655
No 185
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.89 E-value=3.8e+02 Score=23.01 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCC
Q 002400 320 NLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTP 399 (927)
Q Consensus 320 ~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~ 399 (927)
+-+.++..+.+.+....|.-+-.++..+..+..+.+..+...+...+.+.+...... .++.+|......+...-+..+.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~-~d~~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL-VDNTTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT-SCHHHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhCcccC
Confidence 455677777777766788889999999999999988777555555566666666555 5678888888887777655322
Q ss_pred ccccCchHHHHHHHHHHhc
Q 002400 400 DILTPYLDGIVSKLLVLLQ 418 (927)
Q Consensus 400 ~~~~~~l~~l~~~L~~~l~ 418 (927)
. ..-|-+..+..+-..|.
T Consensus 119 ~-~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 119 G-LPLFEGSALEKIEQFLI 136 (144)
T ss_dssp S-SCSSCHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHH
Confidence 1 11244455555554443
No 186
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=20.72 E-value=2.7e+02 Score=23.91 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=45.1
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCC-CchHHHHHHHHHHHhHhcCC
Q 002400 324 VVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQ-NPRVQAHAASAVLNFSENCT 398 (927)
Q Consensus 324 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~-~~~v~~~a~~al~~l~~~~~ 398 (927)
.+...+..|+.....++.++.|++... .+.+.++..+.+.+...+ .+.-|....+.+..++..+.
T Consensus 7 ~l~~kL~~L~~sq~sIq~~s~W~l~h~----------~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk 72 (142)
T 2km4_A 7 QFTTKLNTLEDSQESISSASKWLLLQY----------RDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK 72 (142)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHTCG----------GGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh
Confidence 344556678887788888888888431 345567777777777621 45667777888888887664
Done!