Query 002402
Match_columns 927
No_of_seqs 402 out of 2060
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 1E-133 2E-138 1179.4 62.4 786 41-919 11-834 (834)
2 PRK10199 alkaline phosphatase 100.0 4.5E-27 9.8E-32 260.6 28.6 259 86-367 30-344 (346)
3 PF04389 Peptidase_M28: Peptid 100.0 2.1E-29 4.5E-34 256.7 9.2 170 181-351 1-179 (179)
4 KOG2195 Transferrin receptor a 99.9 4.5E-23 9.8E-28 245.9 16.4 204 159-372 334-551 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.8 6.9E-19 1.5E-23 185.0 18.5 249 82-363 46-334 (338)
6 COG2234 Iap Predicted aminopep 99.7 2E-17 4.4E-22 191.5 15.3 192 162-364 183-393 (435)
7 TIGR03176 AllC allantoate amid 99.5 3.8E-13 8.2E-18 155.1 14.9 127 87-248 3-141 (406)
8 PRK12890 allantoate amidohydro 99.4 5E-12 1.1E-16 145.9 16.3 128 85-247 7-145 (414)
9 PRK12891 allantoate amidohydro 99.4 6E-12 1.3E-16 145.4 16.1 128 83-245 6-145 (414)
10 TIGR01879 hydantase amidase, h 99.4 6.8E-12 1.5E-16 144.3 15.5 126 88-248 2-139 (401)
11 PRK13590 putative bifunctional 99.4 6.3E-12 1.4E-16 151.4 15.0 127 85-246 179-321 (591)
12 PRK13799 unknown domain/N-carb 99.3 6.5E-12 1.4E-16 151.2 14.4 128 84-246 178-321 (591)
13 PRK09290 allantoate amidohydro 99.3 2.1E-11 4.5E-16 140.8 16.4 130 84-248 4-145 (413)
14 PRK09133 hypothetical protein; 99.3 3.7E-11 8.1E-16 141.1 17.1 151 81-262 31-203 (472)
15 PF05450 Nicastrin: Nicastrin; 99.3 6.8E-11 1.5E-15 126.3 16.4 167 181-347 1-200 (234)
16 PRK12892 allantoate amidohydro 99.3 5.6E-11 1.2E-15 136.9 16.2 129 84-248 7-146 (412)
17 PRK12893 allantoate amidohydro 99.3 5.1E-11 1.1E-15 137.3 15.8 131 84-249 7-149 (412)
18 PRK06133 glutamate carboxypept 99.3 1.3E-10 2.8E-15 134.3 18.5 145 86-264 36-198 (410)
19 PRK08596 acetylornithine deace 99.2 2.6E-10 5.6E-15 132.2 18.1 145 87-264 13-179 (421)
20 TIGR01910 DapE-ArgE acetylorni 99.2 2.2E-10 4.8E-15 130.3 15.8 146 91-264 2-168 (375)
21 PRK08588 succinyl-diaminopimel 99.2 2.7E-10 5.9E-15 129.6 16.3 141 86-263 1-162 (377)
22 COG4882 Predicted aminopeptida 99.2 1.9E-10 4.2E-15 125.2 14.1 170 163-366 178-359 (486)
23 PRK07473 carboxypeptidase; Pro 99.2 5.5E-10 1.2E-14 127.7 18.0 149 84-264 8-174 (376)
24 PF09940 DUF2172: Domain of un 99.1 1.3E-09 2.7E-14 121.2 18.1 239 83-367 56-308 (386)
25 PRK07906 hypothetical protein; 99.1 3.9E-10 8.4E-15 130.7 14.3 130 90-249 2-155 (426)
26 TIGR01893 aa-his-dipept aminoa 99.1 6E-10 1.3E-14 131.2 15.8 137 86-264 3-166 (477)
27 KOG2526 Predicted aminopeptida 99.1 1.6E-09 3.5E-14 120.4 17.2 199 161-364 191-417 (555)
28 PRK07338 hypothetical protein; 99.1 1.5E-09 3.4E-14 124.6 17.3 157 86-263 16-190 (402)
29 PRK04443 acetyl-lysine deacety 99.1 1.4E-09 3.1E-14 122.7 15.4 134 85-264 4-149 (348)
30 PRK13013 succinyl-diaminopimel 99.1 3.4E-09 7.3E-14 122.7 18.1 154 86-264 13-189 (427)
31 PRK07907 hypothetical protein; 99.1 3.2E-09 7E-14 124.0 17.6 143 86-264 17-185 (449)
32 PRK08262 hypothetical protein; 99.1 2.9E-09 6.3E-14 125.6 17.1 134 81-247 38-201 (486)
33 COG1363 FrvX Cellulase M and r 99.1 1.4E-08 3.1E-13 114.0 21.6 225 87-366 2-348 (355)
34 PRK13983 diaminopimelate amino 99.1 3.8E-09 8.3E-14 120.8 17.5 149 87-261 5-180 (400)
35 TIGR01883 PepT-like peptidase 99.0 2.2E-09 4.8E-14 121.4 15.0 128 88-247 1-146 (361)
36 PRK15026 aminoacyl-histidine d 99.0 4.2E-09 9.1E-14 124.2 17.4 139 83-263 6-171 (485)
37 PRK09104 hypothetical protein; 99.0 4.1E-09 8.9E-14 123.7 17.1 146 85-262 15-190 (464)
38 TIGR01880 Ac-peptdase-euk N-ac 99.0 4.5E-09 9.8E-14 120.8 16.6 147 83-261 5-173 (400)
39 PRK06446 hypothetical protein; 99.0 4.3E-09 9.4E-14 122.6 16.4 141 87-263 2-164 (436)
40 PRK05469 peptidase T; Provisio 99.0 3.7E-09 8.1E-14 121.9 15.3 124 87-245 2-184 (408)
41 PRK13007 succinyl-diaminopimel 99.0 5.5E-09 1.2E-13 117.7 16.1 134 86-263 6-156 (352)
42 PRK06915 acetylornithine deace 99.0 7.5E-09 1.6E-13 119.8 17.3 157 86-262 16-193 (422)
43 PRK06837 acetylornithine deace 99.0 6.2E-09 1.4E-13 120.9 16.6 145 86-246 19-184 (427)
44 PRK08201 hypothetical protein; 99.0 7.3E-09 1.6E-13 121.3 16.8 146 86-263 13-183 (456)
45 PRK13381 peptidase T; Provisio 99.0 6.1E-09 1.3E-13 120.0 15.9 124 89-247 3-184 (404)
46 PRK07522 acetylornithine deace 99.0 6.2E-09 1.3E-13 118.7 15.0 142 87-263 4-166 (385)
47 PRK00466 acetyl-lysine deacety 99.0 8.3E-09 1.8E-13 116.4 15.2 129 86-264 9-149 (346)
48 TIGR01892 AcOrn-deacetyl acety 99.0 8.3E-09 1.8E-13 116.6 14.9 137 92-264 2-158 (364)
49 TIGR01882 peptidase-T peptidas 98.9 8.1E-09 1.8E-13 119.4 15.1 126 87-246 3-187 (410)
50 PRK08652 acetylornithine deace 98.9 9.9E-09 2.1E-13 115.2 14.9 131 87-263 2-144 (347)
51 PRK13009 succinyl-diaminopimel 98.9 1.2E-08 2.6E-13 116.0 15.5 138 88-262 3-163 (375)
52 PF01546 Peptidase_M20: Peptid 98.9 5.2E-09 1.1E-13 106.8 11.3 165 184-362 1-188 (189)
53 PRK07079 hypothetical protein; 98.9 1.4E-08 2.9E-13 119.5 16.3 149 84-262 14-190 (469)
54 PRK07318 dipeptidase PepV; Rev 98.9 1.7E-08 3.7E-13 118.7 16.1 127 86-249 13-167 (466)
55 PRK07205 hypothetical protein; 98.9 1.8E-08 3.9E-13 117.7 15.7 128 85-249 9-165 (444)
56 PRK05111 acetylornithine deace 98.9 2.9E-08 6.3E-13 113.2 16.0 139 87-261 5-168 (383)
57 TIGR03106 trio_M42_hydro hydro 98.9 1.2E-07 2.5E-12 107.3 20.4 147 198-361 181-339 (343)
58 PRK08651 succinyl-diaminopimel 98.9 3.8E-08 8.3E-13 112.7 16.6 148 86-264 5-173 (394)
59 PRK13004 peptidase; Reviewed 98.8 6E-08 1.3E-12 111.7 16.6 135 87-263 15-172 (399)
60 PRK09961 exoaminopeptidase; Pr 98.8 1.9E-07 4.2E-12 105.6 20.3 151 197-364 163-333 (344)
61 TIGR03107 glu_aminopep glutamy 98.8 2.9E-07 6.3E-12 104.2 21.2 149 198-364 176-341 (350)
62 COG0624 ArgE Acetylornithine d 98.8 6.2E-08 1.3E-12 111.8 15.8 144 87-262 13-180 (409)
63 TIGR01886 dipeptidase dipeptid 98.8 4.7E-08 1E-12 115.0 14.9 126 87-249 13-166 (466)
64 PRK08554 peptidase; Reviewed 98.8 8.4E-08 1.8E-12 112.1 16.8 141 88-264 2-166 (438)
65 TIGR01902 dapE-lys-deAc N-acet 98.8 4.6E-08 9.9E-13 109.9 14.0 125 92-264 2-138 (336)
66 TIGR01891 amidohydrolases amid 98.8 8.2E-08 1.8E-12 109.1 15.2 132 91-263 3-151 (363)
67 KOG2275 Aminoacylase ACY1 and 98.8 8.2E-08 1.8E-12 107.8 14.4 130 83-246 25-176 (420)
68 PRK06156 hypothetical protein; 98.8 1.8E-07 3.9E-12 111.6 18.3 137 86-262 45-213 (520)
69 TIGR01246 dapE_proteo succinyl 98.8 8.6E-08 1.9E-12 109.0 14.9 135 91-262 3-160 (370)
70 TIGR01900 dapE-gram_pos succin 98.8 9.1E-08 2E-12 109.4 14.9 135 93-264 2-171 (373)
71 PRK09864 putative peptidase; P 98.7 5.3E-07 1.2E-11 102.1 20.2 148 198-364 173-341 (356)
72 TIGR03320 ygeY M20/DapE family 98.6 4.1E-07 9E-12 104.5 15.4 134 87-262 13-169 (395)
73 TIGR01887 dipeptidaselike dipe 98.6 3.5E-07 7.5E-12 107.2 14.7 123 87-247 2-153 (447)
74 TIGR03526 selenium_YgeY putati 98.6 6.5E-07 1.4E-11 103.0 16.4 134 87-262 13-169 (395)
75 PRK08737 acetylornithine deace 98.5 1.2E-06 2.7E-11 99.9 14.3 132 86-264 5-157 (364)
76 PLN02693 IAA-amino acid hydrol 98.5 2.7E-06 5.9E-11 99.5 16.2 122 88-248 48-183 (437)
77 PLN02280 IAA-amino acid hydrol 98.5 3.2E-06 6.9E-11 99.9 16.6 119 102-258 109-242 (478)
78 COG4310 Uncharacterized protei 98.3 3.2E-06 6.9E-11 91.4 11.6 171 179-367 177-356 (435)
79 COG4187 RocB Arginine degradat 98.3 3.1E-06 6.8E-11 95.3 10.9 158 83-265 4-209 (553)
80 PF05343 Peptidase_M42: M42 gl 97.9 4.4E-05 9.6E-10 84.7 9.1 133 198-343 132-282 (292)
81 KOG2657 Transmembrane glycopro 97.7 0.00024 5.1E-09 81.8 11.2 187 162-350 156-374 (596)
82 KOG2276 Metalloexopeptidases [ 97.3 0.0031 6.6E-08 71.3 13.6 142 85-247 14-179 (473)
83 PF04114 Gaa1: Gaa1-like, GPI 96.6 0.1 2.2E-06 62.4 19.5 184 162-367 2-228 (504)
84 COG1473 AbgB Metal-dependent a 95.3 0.33 7.3E-06 56.3 14.9 124 102-261 24-163 (392)
85 COG2195 PepD Di- and tripeptid 93.6 0.12 2.6E-06 60.2 6.3 60 199-261 143-203 (414)
86 PRK02813 putative aminopeptida 87.0 1.8 3.9E-05 51.0 8.0 141 196-348 230-415 (428)
87 KOG3566 Glycosylphosphatidylin 85.3 7.4 0.00016 46.7 11.7 93 162-265 119-228 (617)
88 PTZ00371 aspartyl aminopeptida 84.7 3.9 8.4E-05 48.7 9.4 157 196-362 247-453 (465)
89 PRK02256 putative aminopeptida 78.2 2.9 6.4E-05 49.6 5.2 47 195-245 255-301 (462)
90 PRK12821 aspartyl/glutamyl-tRN 58.2 3.4E+02 0.0075 32.4 16.0 33 582-615 316-350 (477)
91 PF10190 Tmemb_170: Putative t 46.2 2.2E+02 0.0047 27.4 9.9 50 421-471 31-80 (105)
92 TIGR02921 PEP_integral PEP-CTE 40.2 8.2E+02 0.018 30.4 19.7 27 475-501 148-174 (952)
93 KOG3533 Inositol 1,4,5-trispho 36.5 1.3E+03 0.028 31.7 17.0 20 445-464 2261-2280(2706)
94 PF05656 DUF805: Protein of un 34.6 2.9E+02 0.0064 26.1 9.4 13 572-584 64-76 (120)
95 PF12911 OppC_N: N-terminal TM 34.4 43 0.00094 27.5 3.1 35 653-687 9-43 (56)
96 PF10337 DUF2422: Protein of u 32.8 5.9E+02 0.013 30.3 13.5 31 587-617 188-218 (459)
97 PRK08651 succinyl-diaminopimel 32.7 78 0.0017 36.3 6.0 56 307-367 338-393 (394)
98 PRK07522 acetylornithine deace 31.4 1.2E+02 0.0025 34.7 7.1 74 277-365 311-384 (385)
99 PRK08596 acetylornithine deace 25.6 1.1E+02 0.0023 35.8 5.6 56 307-367 363-418 (421)
100 PF05297 Herpes_LMP1: Herpesvi 24.3 25 0.00055 38.9 0.0 13 848-860 322-334 (381)
101 PRK11007 PTS system trehalose( 24.1 1.3E+03 0.029 27.8 14.8 36 585-620 303-338 (473)
102 PF06781 UPF0233: Uncharacteri 23.7 1.5E+02 0.0033 27.4 4.8 30 39-69 27-56 (87)
103 KOG2292 Oligosaccharyltransfer 22.7 8.3E+02 0.018 30.0 11.7 28 535-562 193-222 (751)
104 PRK09824 PTS system beta-gluco 20.7 1.7E+03 0.037 27.9 15.9 36 585-620 289-324 (627)
105 KOG3262 H/ACA small nucleolar 20.7 1.1E+02 0.0025 31.9 3.8 25 729-753 60-85 (215)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=1.1e-133 Score=1179.39 Aligned_cols=786 Identities=31% Similarity=0.512 Sum_probs=675.9
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhccccccCCCCCCccc--cCCCCCCHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHH
Q 002402 41 AKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQ--AGKRGFSEFEAIKHVKALTELGPHPVGSDALD-RALQVYV 117 (927)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~~~~--~~~~~fs~~rA~~~L~~L~~igpr~~GS~~n~-~a~~~yL 117 (927)
.+|....++..+.++.... ++.+.++++|.|++..+ ..+++|+++||++++++|+++|||++||++|| .+++ |+
T Consensus 11 ~~r~~~~~~~~~~f~~~~~--~~~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~-~i 87 (834)
T KOG2194|consen 11 RKRNGAPCLAHLIFLLSIA--IVLYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEMHASS-FI 87 (834)
T ss_pred hhhccchHHHHHHHHHHHH--HHHHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHHHHHH-HH
Confidence 3444444444443333333 33345566666665444 44789999999999999999999999999999 8999 99
Q ss_pred HHHHHhhccccCCc-eeEEEEEEeccCCccccccccc--ccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC
Q 002402 118 FAAAQKIKETKHWE-VDVEVDFFHAKSGANRLVSGAF--MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA 194 (927)
Q Consensus 118 ~~~l~~ig~~~~~~-~~vevd~f~~~~g~~~~~g~~~--~~~~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~ 194 (927)
++|+++++++++.+ +++|+|.+.. +|.| ++++.+|++++||++||.+|+ +.++.+||++|||||+++
T Consensus 88 l~e~~~i~~~~~~~~~~~Evd~q~~--------sg~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfDSvpt 157 (834)
T KOG2194|consen 88 LKEVNKIRKGSQSDLYDMEVDLQSA--------SGSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFDSVPT 157 (834)
T ss_pred HHHHHHHHhhhhcchhhheeceeec--------cceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeeccccccCC
Confidence 99999999877664 5677776553 2333 678899999999999999984 344569999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCCCCCCccceec
Q 002402 195 AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQA 274 (927)
Q Consensus 195 spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G~gG~~~lfq~ 274 (927)
+|||+||++|||+|||++|++++..+.++|+|+|+||++||.+++|||+|++||||+++|+++||||++|+||++++||+
T Consensus 158 ~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQa 237 (834)
T KOG2194|consen 158 GPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQA 237 (834)
T ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEec
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHH
Q 002402 275 GPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLG 354 (927)
Q Consensus 275 g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g 354 (927)
||++|+++.|.++++||+++++++|+||+|+|||+|||++|++++|+||+|+|+..|++.|||++|.++++.++++||+|
T Consensus 238 gp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tG 317 (834)
T KOG2194|consen 238 GPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTG 317 (834)
T ss_pred CCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhh
Confidence 99779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccCCCCCCceEEeeccCceEEEEechhHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 002402 355 ENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVS 434 (927)
Q Consensus 355 ~~vl~lv~~la~s~~l~~~~~~~~~~~~~~~~~VyFd~~G~~~v~y~~~~~~~l~~~v~~~~l~l~~~~l~~~~~~~l~~ 434 (927)
+|++++++.++|+ ++.+ .++.+++ +||||++|++|+.|+++++++||+.+ .+.++ ....+.+.+.+.+
T Consensus 318 en~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i---~~~i~-l~~~~~g~~~~~~ 385 (834)
T KOG2194|consen 318 ENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITI---CISIW-LMSLRSGSSQLGK 385 (834)
T ss_pred hHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhh---hhhhh-hhhhcccchhhhh
Confidence 9999999999998 5542 3455667 99999999999999999999999332 22223 3344444445889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC
Q 002402 435 LALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQL 514 (927)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~s~~~l~igly~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 514 (927)
++++|+.+++++++++++++++|++++.++ .+|+||++||+++|+|.||+++|+.++|.++... .+ +.++
T Consensus 386 f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~----~~-----~~~~ 455 (834)
T KOG2194|consen 386 FILACLLQILSIVVAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKR----SK-----RHSL 455 (834)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhh----cc-----cccc
Confidence 999999999999999999999999999994 6999999999999999999999999999873211 11 1111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 002402 515 SPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLA 594 (927)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~~a~~~~w~ll~~~~t~~~i~S~y~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 594 (927)
..++.+++++|+ +|++|++++|+++|||+|++++|+++|+++ ++.++..++|.++..|..+++++++
T Consensus 456 --------~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~ 522 (834)
T KOG2194|consen 456 --------EYLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQV 522 (834)
T ss_pred --------chhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeeh
Confidence 113556777886 788889999999999999999999999999 5577888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q 002402 595 VPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSL 674 (927)
Q Consensus 595 ~P~l~~~~~~~~~~~~~~p~~gR~g~~~~~~pd~l~d~~ia~~~a~~~~l~~~~l~P~~~~~~~~~~i~~~l~~~~~~~~ 674 (927)
.|+.+.+|.+++++.+|+|||||+|.+. ||| .+||.++++.+.+.++|++|++|+||+++.++.+++.++.+++
T Consensus 523 ~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~ 596 (834)
T KOG2194|consen 523 GPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVIL 596 (834)
T ss_pred HhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999855 997 8999999999999999999999999999999998988888888
Q ss_pred HHHhhCCCCCCCCCC-CcceEEEEEEeccCCCCCC---CCCcceeeccccCCC--------CchHHH---HhccCCcccC
Q 002402 675 ILVLSGTVPPFSEDT-ARAVNVVHVVDASGKFGGK---QEPSSFIALYSTTPG--------KLTKEV---EQIKEGFVCG 739 (927)
Q Consensus 675 ~~~~~~~~~pf~~~~-~~r~~~~h~~~~~~~~d~~---~d~~~~~~l~~~~~~--------~l~~~~---~~c~~e~~Cg 739 (927)
.+++|.++|||++++ +||+.++|++|++|+++|. +|+++++...|.... +++++. .+|+.+++||
T Consensus 597 ~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 676 (834)
T KOG2194|consen 597 IIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCG 676 (834)
T ss_pred HHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCC
Confidence 778899999999875 5799999999999999975 788888887765432 233332 5689999999
Q ss_pred CccccccccceeeeeeEeecCCCCcccCCCCC-------ceeeeccccccccccccCCCceEEEEEEEcCCCcEEEEEec
Q 002402 740 RDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVP-------TIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDA 812 (927)
Q Consensus 740 ~~~~~~f~~~p~y~~~~~~~~~~~~Wlp~~~p-------~l~~~s~~~~~~~~~~~~~~~~~r~~f~~~g~~~~sl~i~p 812 (927)
+ |+|+ |.+.+.+++|+|+++| .+.+++| +..++++.|++|++.|++||++||+|
T Consensus 677 ~---------p~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk--------~~~~~~~~r~~~~i~~~d~~s~~i~p 737 (834)
T KOG2194|consen 677 M---------PVYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSK--------TSLDNGNLRYEFSITGTDHISLFISP 737 (834)
T ss_pred c---------eeee--ccccCccceEecCCccccCCCCceEEEeec--------cccCCCceEEEEEEeccCceEEEEEe
Confidence 9 8998 9999999999999876 4556666 44557789999999999999999999
Q ss_pred ---eeecceeeecCCcccccCCCCCCCCCcEEEEEEcC-CCCceEEEEEEEeccCCcccccccccccCCCceEEEe----
Q 002402 813 ---EEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGG-KNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLR---- 884 (927)
Q Consensus 813 ---~~i~~wSf~~~~~~~~~~~~~~~~~~~~~i~~s~G-~~~P~~F~l~l~~~~~~~~~~~~~~~~~~~~p~~~l~---- 884 (927)
+++.+|||.+. + ..+ + ..+|+||++|| ++.|++||||+++. ++.+++| +|++
T Consensus 738 ~~d~~~~~wsf~~~---~--~~~--~-~~~~~i~~~yg~~~~p~~F~lel~~~-----------~~~~~v~-~k~~~~~h 797 (834)
T KOG2194|consen 738 LNDVKVLDWSFTTS---P--LTE--N-KTPYHIYFSYGLDSTPLNFWLELEKE-----------EGVTDVP-FKLGVSAH 797 (834)
T ss_pred cCCceEEEEeccCC---c--ccc--c-CCceEEEEEeecCCCCceEEEEEeec-----------cCccCCc-eEEeeeee
Confidence 59999999644 3 333 2 22699999999 89999999999998 5578888 8888
Q ss_pred --ccccCCCHHHHHHHhcCCCccccccCCCCcccccc
Q 002402 885 --TDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF 919 (927)
Q Consensus 885 --~~~~~~t~~~~~~l~~fP~wa~~~gk~~~p~~l~~ 919 (927)
+|.+++||++++|+++||+||..++|++|+....|
T Consensus 798 ~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 798 YIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF 834 (834)
T ss_pred eccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence 47889999999999999999999999999987654
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.96 E-value=4.5e-27 Score=260.59 Aligned_cols=259 Identities=20% Similarity=0.277 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc-ccccccc
Q 002402 86 EFEAIKHVKALTE-LGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR-TLIYSDL 163 (927)
Q Consensus 86 ~~rA~~~L~~L~~-igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~-~~~y~~~ 163 (927)
.+-|.+++++|+. +++|++||+++.++++ ||.++|+++| ++++.+.|..+.. .... .+. .......
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~-yL~~~f~~lG------~~v~~q~f~~~~~-~~~~----~g~~~~~~~~g 97 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSAD-YLRQQFQQMG------YQSDIRTFNSRYI-YTAR----DNRKNWHNVTG 97 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHHHHHHHCC------CceEeeeccccce-eecc----cccccccCCcc
Confidence 5567788888977 8999999999999999 9999999999 5565554442100 0000 000 0011346
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEEeeccccc--------------CCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 002402 164 NHIVLRIQPKYASEAAENAILVSSHIDTVF--------------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFL 229 (927)
Q Consensus 164 ~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~--------------~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFl 229 (927)
.|||++++|+ .++.|+++|||||++ ..+||+||++|||+|||++|.|++. +++++|+|+
T Consensus 98 ~nVIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv 170 (346)
T PRK10199 98 STVIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFV 170 (346)
T ss_pred ceEEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEE
Confidence 8999999885 346899999999985 2479999999999999999999864 578899999
Q ss_pred EeCCCCCCccchHHHHhcCCc--cCCceEEEEeccCCCCCCccceecCCC-HHHH-----HHHHHHhcCCCCcchhh---
Q 002402 230 FNTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEAMGIGGKSGLFQAGPH-PWAV-----ENFAAAAKYPSGQVTAQ--- 298 (927)
Q Consensus 230 f~~aEE~Gl~GS~~fv~~h~~--~~~i~a~INLD~~G~gG~~~lfq~g~~-~~li-----~~y~~~a~~p~~~~l~~--- 298 (927)
++++||.|+.||+.|+++++. .+++.++||+|+++.+ ....+..|.+ ...+ +...+.++ ..|..+..
T Consensus 171 ~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a~-~~g~~~~~~~~ 248 (346)
T PRK10199 171 ATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIAR-RHGIAATTNPG 248 (346)
T ss_pred EECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHHH-HcCCccccCCC
Confidence 999999999999999987643 4689999999999875 4445555542 2111 11112221 12222211
Q ss_pred --hhhccCCCCCCCchHHhhhcCCCeEEEEEee-------------------CCCCCCC-CCCCCcCCCCH-------hH
Q 002402 299 --DLFASGAITSATDFQVYKEVAGLSGLDFAYT-------------------DKSAVYH-TKNDKLDLLKP-------GS 349 (927)
Q Consensus 299 --e~f~~g~ips~TD~~~F~~~~GIPgld~a~~-------------------~~~~~YH-T~~Dt~d~id~-------~s 349 (927)
..+..| ....|||.+|.+ .|||.+.+... ..+..+| |.+|+.++++. ..
T Consensus 249 ~~~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~ 326 (346)
T PRK10199 249 LNKNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERR 326 (346)
T ss_pred ccccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHH
Confidence 122223 235699999999 99999988422 1245689 89999999887 35
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 002402 350 LQHLGENMLAFLLQAASS 367 (927)
Q Consensus 350 lq~~g~~vl~lv~~la~s 367 (927)
+....+.+++++.+|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~ 344 (346)
T PRK10199 327 CRDVVRIMLPLVKELAKA 344 (346)
T ss_pred HHhHHHHHHHHHHHHhcc
Confidence 666778899999999985
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=2.1e-29 Score=256.71 Aligned_cols=170 Identities=31% Similarity=0.484 Sum_probs=131.0
Q ss_pred CEEEEEeeccccc------CCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhc-CCccCC
Q 002402 181 NAILVSSHIDTVF------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 253 (927)
Q Consensus 181 ~~VLl~AHyDSv~------~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~-h~~~~~ 253 (927)
++|+|+|||||++ .++||+||++|||+|||+||.|++.+.+++++|+|+||+|||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 899999999999999999999999777889999999999999999999999963 356789
Q ss_pred ceEEEEeccCCCCCCccceecCCC-HHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchHHhhhcCCCeEEEEEeeC-C
Q 002402 254 IRVAIDLEAMGIGGKSGLFQAGPH-PWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD-K 331 (927)
Q Consensus 254 i~a~INLD~~G~gG~~~lfq~g~~-~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 331 (927)
+.++||+|++|.+++....+..+. ++.++.+.+....+.+.....+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 999999999999888877765442 3434444333322333322233332234556799999997 999999999887 7
Q ss_pred CCCCCCCCCCcCCCCHhHHH
Q 002402 332 SAVYHTKNDKLDLLKPGSLQ 351 (927)
Q Consensus 332 ~~~YHT~~Dt~d~id~~slq 351 (927)
.+.|||+.||++++++++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78999999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=245.90 Aligned_cols=204 Identities=22% Similarity=0.307 Sum_probs=160.6
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHh---cCCCCCCcEEEEEeCCCC
Q 002402 159 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTGEE 235 (927)
Q Consensus 159 ~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~---~~~~p~~~IvFlf~~aEE 235 (927)
.-.++.|||++|+|. ++++++|+|++|+|||. +||.|+++|+|+|+|++|.+.. .+++|+|+|+|++|||||
T Consensus 334 ~~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeE 408 (702)
T KOG2195|consen 334 EETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEE 408 (702)
T ss_pred eeeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchh
Confidence 346789999999996 58999999999999995 8899999999999999999876 579999999999999999
Q ss_pred CCccchHHHHhcCC--ccCCceEEEEeccCCCCCCccceecCCCHHHHHHH---HHHhcCCCCcchhhhhhccCCCCCCC
Q 002402 236 EGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENF---AAAAKYPSGQVTAQDLFASGAITSAT 310 (927)
Q Consensus 236 ~Gl~GS~~fv~~h~--~~~~i~a~INLD~~G~gG~~~lfq~g~~~~li~~y---~~~a~~p~~~~l~~e~f~~g~ips~T 310 (927)
.|+.||..|+++|. +..++.++||+|+++.++...-.+ ++|.+.+.. .+..+.|........ ......+|
T Consensus 409 fGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~--~~PlL~~li~~~~k~~~~p~~~~~~~~---v~~~g~~S 483 (702)
T KOG2195|consen 409 FGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK--TTPLLTDLIEEAAKSVLSPDKGDQSNR---VLSLGGGS 483 (702)
T ss_pred ccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe--cCccHHHHHHHHHhccCCCCcccccee---EeccCCCC
Confidence 99999999999885 357899999999999876443333 344444333 333455544322111 11237899
Q ss_pred chHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCC----CHh--HHHHHHHHHHHHHHHHhcCCCCCC
Q 002402 311 DFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLL----KPG--SLQHLGENMLAFLLQAASSTSLPK 372 (927)
Q Consensus 311 D~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----d~~--slq~~g~~vl~lv~~la~s~~l~~ 372 (927)
||.+|..+.|||+++++|....+.|||.+||++.+ |+. .+..++.+....+..+++++.+|-
T Consensus 484 d~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPf 551 (702)
T KOG2195|consen 484 DYASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPF 551 (702)
T ss_pred cchhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 99999999999999999999999999999996654 333 455556666677777777666664
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.9e-19 Score=185.00 Aligned_cols=249 Identities=18% Similarity=0.273 Sum_probs=186.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002402 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 161 (927)
Q Consensus 82 ~~fs~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~ 161 (927)
+.-+-.|.++.|.-|- -||.+||+++.++++ ||.+.++.++ ..+|.|.|..... .-+.
T Consensus 46 ~~s~~~~~~~~L~p~l--v~Rvpgs~g~~~vr~-~i~~~l~~l~------w~ve~~~f~~~tp-------------~g~~ 103 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPIL--VPRVPGSPGSRQVRR-FIIQHLRNLG------WAVETDAFTDNTP-------------LGTR 103 (338)
T ss_pred CCCCHHHHHHhhhhhh--ccccCCCCccHHHHH-HHHHHHHhcC------ceeeeccccccCc-------------ceee
Confidence 3446678888876665 489999999999999 9999999997 7889888775321 1135
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccCC----CCCCCChhHHHHHHHHHHHHHhc----CCCCCCcEEEEEeCC
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----EGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLFNTG 233 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~s----pGA~Dn~sGVA~mLElaR~L~~~----~~~p~~~IvFlf~~a 233 (927)
+..|||+++.+. .++++++.|||||.-.. -||.|.+..||.||++||.+.+. ...++-++.++|+||
T Consensus 104 ~f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDG 178 (338)
T KOG3946|consen 104 NFNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDG 178 (338)
T ss_pred eeeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEecc
Confidence 678999999764 67889999999996321 58999999999999999999873 234678899999999
Q ss_pred CCC--------CccchHHHHhcC------C-----ccCCceEEEEeccCCCCCCcc--ceecCCCHHHHHHH------HH
Q 002402 234 EEE--------GLNGAHSFVTQH------P-----WSTTIRVAIDLEAMGIGGKSG--LFQAGPHPWAVENF------AA 286 (927)
Q Consensus 234 EE~--------Gl~GS~~fv~~h------~-----~~~~i~a~INLD~~G~gG~~~--lfq~g~~~~li~~y------~~ 286 (927)
||. .++||++.++++ + ..+.+...+-+|-.|+.+++. .|.. ++.|..+-- .+
T Consensus 179 EEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~ 257 (338)
T KOG3946|consen 179 EEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELAL 257 (338)
T ss_pred HHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHH
Confidence 983 689999998772 2 235677788888899877764 2221 234432211 11
Q ss_pred H---hcCCCCcchhhhhhccCCCC--CCCchHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHH
Q 002402 287 A---AKYPSGQVTAQDLFASGAIT--SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFL 361 (927)
Q Consensus 287 ~---a~~p~~~~l~~e~f~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv 361 (927)
+ ..++. -...||.+... -+.||.+|.+ .|+|.+.+.-..-..+|||+.|+..++|..+..|++..+-.++
T Consensus 258 ~g~l~s~r~----~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv 332 (338)
T KOG3946|consen 258 LGLLASHRL----PPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFV 332 (338)
T ss_pred HHHHHhccC----CchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHH
Confidence 1 12221 12335543321 3789999999 9999999988777889999999999999999999998877766
Q ss_pred HH
Q 002402 362 LQ 363 (927)
Q Consensus 362 ~~ 363 (927)
.+
T Consensus 333 ~e 334 (338)
T KOG3946|consen 333 AE 334 (338)
T ss_pred HH
Confidence 54
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.73 E-value=2e-17 Score=191.52 Aligned_cols=192 Identities=25% Similarity=0.298 Sum_probs=137.4
Q ss_pred ccceEEEEEcCCCC-------CcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q 002402 162 DLNHIVLRIQPKYA-------SEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 234 (927)
Q Consensus 162 ~~~NVIa~i~G~~~-------~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aE 234 (927)
+..|+++++++... ....++.+++++|+|+++.+|||+||++|+|++||+||+|++. +|+++|+|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 45666666665411 1246789999999999999999999999999999999999985 49999999999999
Q ss_pred CCCccchHHHHhcCC--ccCCceEEEEeccCCCCCCccceecCC---C--HHHHHHHHHHhcCCCCcchhhhhhccCCCC
Q 002402 235 EEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGP---H--PWAVENFAAAAKYPSGQVTAQDLFASGAIT 307 (927)
Q Consensus 235 E~Gl~GS~~fv~~h~--~~~~i~a~INLD~~G~gG~~~lfq~g~---~--~~li~~y~~~a~~p~~~~l~~e~f~~g~ip 307 (927)
|.|+.||+.|+.++. ..+++.++||+||.|..++...++... + ........+...++... .+. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----ccc-CCCC
Confidence 999999999997765 357888899999999976333233211 1 11122222221122211 111 1234
Q ss_pred CCCchHHhhhcCCCeEEEEEeeCCC-----CCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHH
Q 002402 308 SATDFQVYKEVAGLSGLDFAYTDKS-----AVYHTKNDKLDLLKPGSLQHLGENMLAFLLQA 364 (927)
Q Consensus 308 s~TD~~~F~~~~GIPgld~a~~~~~-----~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~l 364 (927)
..+||.+|.. .|+|++.+...... .++||..|| ++ +..++++.+..+.+.+...
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~~~ 393 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLVLD 393 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhhhh
Confidence 5699999998 99999988755433 589999999 88 8888888775555444433
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.47 E-value=3.8e-13 Score=155.10 Aligned_cols=127 Identities=20% Similarity=0.138 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002402 87 FEAIKHVKALTELGP-------HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 159 (927)
Q Consensus 87 ~rA~~~L~~L~~igp-------r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 159 (927)
.|.++.|++|++||. |...|++..++++ ||.++++++| +++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~-~~~~~~~~~G------l~v~~D---------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQ-QFKKRMAESG------LETRFD---------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHH-HHHHHHHHcC------CEEEEc----------------------
Confidence 588999999999853 5667999999999 9999999998 667665
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--
Q 002402 160 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG-- 237 (927)
Q Consensus 160 y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~G-- 237 (927)
...|++++++|. ..+.+.|++++|+|||+. .|.-|+..||++.||++|.|++.+.+|+++|.+++|..||.+
T Consensus 54 --~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf 127 (406)
T TIGR03176 54 --DVGNLYGRLVGT---EFPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRF 127 (406)
T ss_pred --CCCcEEEEecCC---CCCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccC
Confidence 346999999996 235689999999999985 689999999999999999999988899999999999999986
Q ss_pred ---ccchHHHHhcC
Q 002402 238 ---LNGAHSFVTQH 248 (927)
Q Consensus 238 ---l~GS~~fv~~h 248 (927)
++||+.+..+.
T Consensus 128 ~~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 128 PYVFWGSKNIFGLA 141 (406)
T ss_pred CcccccHHHHhCCC
Confidence 99999998544
No 8
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.38 E-value=5e-12 Score=145.94 Aligned_cols=128 Identities=19% Similarity=0.185 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccc
Q 002402 85 SEFEAIKHVKALTELG------PHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 158 (927)
Q Consensus 85 s~~rA~~~L~~L~~ig------pr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~ 158 (927)
+.+|+++++.+|++|+ .|+..|.++.++++ ||.++|+++| ++++.+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~-~l~~~l~~~G------~~~~~~--------------------- 58 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARA-LLAAWMRAAG------LEVRRD--------------------- 58 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHH-HHHHHHHHCC------CEEEEc---------------------
Confidence 4689999999999875 35677888889999 9999999998 555542
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC--
Q 002402 159 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE-- 236 (927)
Q Consensus 159 ~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~-- 236 (927)
...|++++++|+ ..+.+.|++++|+|+|+. .|+.|+.+|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 ---~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~ 131 (414)
T PRK12890 59 ---AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVR 131 (414)
T ss_pred ---CCCcEEEEeCCC---CCCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccc
Confidence 124999999874 124578999999999985 58899999999999999999988777899999999999997
Q ss_pred ---CccchHHHHhc
Q 002402 237 ---GLNGAHSFVTQ 247 (927)
Q Consensus 237 ---Gl~GS~~fv~~ 247 (927)
++.||+.+...
T Consensus 132 ~~~~~~G~~~~~~~ 145 (414)
T PRK12890 132 FGPSMIGSRALAGT 145 (414)
T ss_pred cCCccccHHHHHcc
Confidence 67899888754
No 9
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.37 E-value=6e-12 Score=145.42 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHhcC--C-----CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccc
Q 002402 83 GFSEFEAIKHVKALTELG--P-----HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMG 155 (927)
Q Consensus 83 ~fs~~rA~~~L~~L~~ig--p-----r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~ 155 (927)
.++.+|.+++++.|++|| | |+..|.++.++++ ||.++|++.| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~-~l~~~l~~~G------~~v~~~------------------ 60 (414)
T PRK12891 6 RVDGERLWASLERMAQIGATPKGGVCRLALTDGDREARD-LFVAWARDAG------CTVRVD------------------ 60 (414)
T ss_pred ccCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHH-HHHHHHHHCC------CEEEEC------------------
Confidence 346679999999999985 3 6778888889999 9999999998 566553
Q ss_pred ccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 002402 156 RTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 235 (927)
Q Consensus 156 ~~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE 235 (927)
...|++++++|. ....+.|++++|+||||. .|..|+.+||+++|+++|.|++.+.+++++|.|+++.+||
T Consensus 61 ------~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE 130 (414)
T PRK12891 61 ------AMGNLFARRAGR---DPDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEE 130 (414)
T ss_pred ------CCCCEEEEecCC---CCCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccc
Confidence 224999999875 124578999999999985 4778999999999999999999888899999999999999
Q ss_pred CC-----ccchHHHH
Q 002402 236 EG-----LNGAHSFV 245 (927)
Q Consensus 236 ~G-----l~GS~~fv 245 (927)
.+ +.||+.+.
T Consensus 131 ~~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 131 GSRFAPSMVGSGVFF 145 (414)
T ss_pred cCcCCcccccHHHHh
Confidence 85 67998774
No 10
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.36 E-value=6.8e-12 Score=144.34 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccc
Q 002402 88 EAIKHVKALTELGP-------HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 160 (927)
Q Consensus 88 rA~~~L~~L~~igp-------r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y 160 (927)
|.++++.+|++++. |..-|.++.++++ ||.++++++| +++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~-~l~~~~~~~G------~~~~~~----------------------- 51 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQD-LFKKRMRAAG------LEVRFD----------------------- 51 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHH-HHHHHHHHCC------CEEEEe-----------------------
Confidence 78899999998854 4445887889999 9999999998 556553
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC----
Q 002402 161 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE---- 236 (927)
Q Consensus 161 ~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~---- 236 (927)
+..||+++++|. ..+.+.|++++|+|+|+. .|.-|+..|++++|+++|.|++.+.+|+++|.|+++.+||.
T Consensus 52 -~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~ 126 (401)
T TIGR01879 52 -EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFP 126 (401)
T ss_pred -cCCcEEEEecCC---CCCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcc
Confidence 225999999875 123578999999999985 57889999999999999999998888999999999999997
Q ss_pred -CccchHHHHhcC
Q 002402 237 -GLNGAHSFVTQH 248 (927)
Q Consensus 237 -Gl~GS~~fv~~h 248 (927)
++.||+.++.+.
T Consensus 127 ~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 127 YGMWGSRNMVGLA 139 (401)
T ss_pred cccccHHHHhccc
Confidence 789999998654
No 11
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.35 E-value=6.3e-12 Score=151.40 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHHhhccccCCce-eEEEEEEeccCCccccccccc
Q 002402 85 SEFEAIKHVKALTELGP----------HPVGSDALDRALQVYVFAAAQKIKETKHWEV-DVEVDFFHAKSGANRLVSGAF 153 (927)
Q Consensus 85 s~~rA~~~L~~L~~igp----------r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~-~vevd~f~~~~g~~~~~g~~~ 153 (927)
-.+|.++.+.+|++|+. |...|++..++++ ||.++++++| + ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~-~l~~~~~~~G------l~~v~~D---------------- 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQ-QISHWMRDCG------FDEVHID---------------- 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHH-HHHHHHHHcC------CCeeeEC----------------
Confidence 35799999999999743 3345899999999 9999999998 5 56554
Q ss_pred ccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q 002402 154 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 233 (927)
Q Consensus 154 ~~~~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~a 233 (927)
...||+++++|+ ....+.|++++|+|||+. .|.-|+..||+++||++|.|.+.+.+++++|.|++|.+
T Consensus 236 --------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~ 303 (591)
T PRK13590 236 --------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAE 303 (591)
T ss_pred --------CCCCEEEEecCC---CCCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Confidence 347999999985 233478999999999985 68899999999999999999998888889999999999
Q ss_pred CCC-----CccchHHHHh
Q 002402 234 EEE-----GLNGAHSFVT 246 (927)
Q Consensus 234 EE~-----Gl~GS~~fv~ 246 (927)
||. ++.||+.+..
T Consensus 304 EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13590 304 EEGQRYKATFLGSGALIG 321 (591)
T ss_pred CccccCCccccchHHHhC
Confidence 997 5999998764
No 12
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.34 E-value=6.5e-12 Score=151.21 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHhcC-----C-----CCCCCHHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCcccccccc
Q 002402 84 FSEFEAIKHVKALTELG-----P-----HPVGSDALDRALQVYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGA 152 (927)
Q Consensus 84 fs~~rA~~~L~~L~~ig-----p-----r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~ 152 (927)
-..+|.++.++.|++|| + |...|+++.++++ |+.++++++| ++ +++|
T Consensus 178 ~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~-~~~~~~~~~G------l~~v~~D--------------- 235 (591)
T PRK13799 178 AIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACAN-QISDWMRDAG------FDEVEID--------------- 235 (591)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHH-HHHHHHHHcC------CCeEeEC---------------
Confidence 36789999999999986 1 5667999999999 9999999999 55 7765
Q ss_pred cccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q 002402 153 FMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 232 (927)
Q Consensus 153 ~~~~~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~ 232 (927)
...||+++++|+ ..+.+.|++++|+|||+ ..|.-|+..||+++||++|.|.+.+.+++++|.++.|.
T Consensus 236 ---------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~-~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~ 302 (591)
T PRK13799 236 ---------AVGNVVGRYKAA---DDDAKTLITGSHYDTVR-NGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFA 302 (591)
T ss_pred ---------CCCCEEEEcCCC---CCCCCeEEEeccccccC-CCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEec
Confidence 347999999886 23568899999999998 58999999999999999999999999999999999999
Q ss_pred CCCC-----CccchHHHHh
Q 002402 233 GEEE-----GLNGAHSFVT 246 (927)
Q Consensus 233 aEE~-----Gl~GS~~fv~ 246 (927)
+||. ++.||+.+..
T Consensus 303 ~EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 303 EEEGQRFKATFLGSGALIG 321 (591)
T ss_pred CCCccCCCccccchHHHhC
Confidence 9997 7999999974
No 13
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.32 E-value=2.1e-11 Score=140.77 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc
Q 002402 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 156 (927)
Q Consensus 84 fs~~rA~~~L~~L~~igp-------r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 156 (927)
.+.+++++++++|.++|+ |+..|.++.++++ ||.++|+++| ++++++
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~-~l~~~l~~~g------~~~~~~------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARD-LFAEWMEAAG------LTVRVD------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHH-HHHHHHHHcC------CEEEEc-------------------
Confidence 457899999999999855 5677887779999 9999999998 555542
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q 002402 157 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE 236 (927)
Q Consensus 157 ~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~ 236 (927)
...|+++++.|. ..+++.|++++|+|+|+. .|..|+..|+|+|+++++.|++.+.+++++|.|+++.+||.
T Consensus 58 -----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 128 (413)
T PRK09290 58 -----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEG 128 (413)
T ss_pred -----CCCcEEEEecCC---CCCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCcc
Confidence 225999999763 123468999999999985 56789999999999999999988777889999999999998
Q ss_pred -----CccchHHHHhcC
Q 002402 237 -----GLNGAHSFVTQH 248 (927)
Q Consensus 237 -----Gl~GS~~fv~~h 248 (927)
|+.|++.++.++
T Consensus 129 g~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 129 SRFGPAMLGSRVFTGAL 145 (413)
T ss_pred ccccCccccHHHHHccc
Confidence 578999988654
No 14
>PRK09133 hypothetical protein; Provisional
Probab=99.30 E-value=3.7e-11 Score=141.09 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=115.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEE-EEEEeccCCccccccccccccccc
Q 002402 81 KRGFSEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVE-VDFFHAKSGANRLVSGAFMGRTLI 159 (927)
Q Consensus 81 ~~~fs~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~ve-vd~f~~~~g~~~~~g~~~~~~~~~ 159 (927)
..++..+++.+.|++|.+|. -+.+..++.++.+ ||.++|+++| ++++ ++.+..
T Consensus 31 ~~~~~~~~~~~~l~~Lv~i~-S~s~~~~e~~~~~-~l~~~l~~~G------~~~~~~~~~~~------------------ 84 (472)
T PRK09133 31 APTADQQAARDLYKELIEIN-TTASTGSTTPAAE-AMAARLKAAG------FADADIEVTGP------------------ 84 (472)
T ss_pred CcchhHHHHHHHHHHHhccC-CCCCCcchHHHHH-HHHHHHHHcC------CCceEEEeccC------------------
Confidence 35688999999999999873 2222234457889 9999999998 3322 121110
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhcC
Q 002402 160 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWA 219 (927)
Q Consensus 160 y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~--------------------spGA~Dn~sGVA~mLElaR~L~~~~ 219 (927)
..+..|+++++.|+ .+++.|++++|+|+||. +.|+.|+.+|+|++|++++.|.+.+
T Consensus 85 ~~~~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~ 160 (472)
T PRK09133 85 YPRKGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREG 160 (472)
T ss_pred CCCceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcC
Confidence 01347999999775 23467999999999974 3799999999999999999998877
Q ss_pred CCCCCcEEEEEeCCCC-CCccchHHHHhcCCccCCceEEEEecc
Q 002402 220 HGFKNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 220 ~~p~~~IvFlf~~aEE-~Gl~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
..++++|.|++..+|| .|..|++.++++++..-+..++|+ |.
T Consensus 161 ~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 161 FKPKRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCCCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 7788999999999999 899999999987653334567888 65
No 15
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.28 E-value=6.8e-11 Score=126.31 Aligned_cols=167 Identities=23% Similarity=0.333 Sum_probs=115.9
Q ss_pred CEEEEEeeccccc----CCCCCCCChhHHHHHHHHHHHHHhc---CCCCCCcEEEEEeCCCCCCccchHHHHhcC-----
Q 002402 181 NAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQW---AHGFKNAVIFLFNTGEEEGLNGAHSFVTQH----- 248 (927)
Q Consensus 181 ~~VLl~AHyDSv~----~spGA~Dn~sGVA~mLElaR~L~~~---~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h----- 248 (927)
+.|++.|.+||.. .+|||+++.+|++++|++|+.|++. ....+++|+|+|++||..|..||+.|+.+.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999964 4799999999999999999999874 245789999999999999999999998543
Q ss_pred C--------c-cCCceEEEEeccCCCCCCcccee-c-CC--C---HHHHHHHHHHhcCCCCc--chhhhhhccCCCCCCC
Q 002402 249 P--------W-STTIRVAIDLEAMGIGGKSGLFQ-A-GP--H---PWAVENFAAAAKYPSGQ--VTAQDLFASGAITSAT 310 (927)
Q Consensus 249 ~--------~-~~~i~a~INLD~~G~gG~~~lfq-~-g~--~---~~li~~y~~~a~~p~~~--~l~~e~f~~g~ips~T 310 (927)
| . .++|..+|.++.+|..+...++. + ++ + ..+.+...+..+.+... ...+..-...-+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 2 1 15899999999999866532332 1 21 1 12333333332222111 1111111122466656
Q ss_pred chHHhhhcCCCeEEEEEeeCC---CCCCCCCCCCcCCCCH
Q 002402 311 DFQVYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKP 347 (927)
Q Consensus 311 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~ 347 (927)
=++..++..++||+-++-.+. ..+||+.+|+.++++.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 555555545899998876544 4689999999998876
No 16
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.27 E-value=5.6e-11 Score=136.91 Aligned_cols=129 Identities=22% Similarity=0.284 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002402 84 FSEFEAIKHVKALTELGP------HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 157 (927)
Q Consensus 84 fs~~rA~~~L~~L~~igp------r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 157 (927)
.+.+|+++.+++|++++. |+..|.++.++++ ||.++|+++| ++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~-~l~~~l~~~G------~~~~~~-------------------- 59 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARR-RLAAWCEAAG------LAVRID-------------------- 59 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHH-HHHHHHHHcC------CEEEEc--------------------
Confidence 457799999999999863 3556777778899 9999999998 555542
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC-
Q 002402 158 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE- 236 (927)
Q Consensus 158 ~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~- 236 (927)
+..|++++++|+ .+.+.|++++|+|+|+. .|-.|+..|+|++|++++.|++.+.+++++|.|+++.+||.
T Consensus 60 ----~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 130 (412)
T PRK12892 60 ----GIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGS 130 (412)
T ss_pred ----CCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccc
Confidence 224999999875 23478999999999985 46788999999999999999998888899999999999998
Q ss_pred ----CccchHHHHhcC
Q 002402 237 ----GLNGAHSFVTQH 248 (927)
Q Consensus 237 ----Gl~GS~~fv~~h 248 (927)
++.||+.++.++
T Consensus 131 ~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 131 RFTPGFLGSRAYAGRL 146 (412)
T ss_pred cccCccccHHHHHcCC
Confidence 578999998544
No 17
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.27 E-value=5.1e-11 Score=137.34 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc
Q 002402 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 156 (927)
Q Consensus 84 fs~~rA~~~L~~L~~igp-------r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 156 (927)
.+.++++++|++|.++.. |..+|.++.++.+ ||.++|+++| ++++++
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~-~l~~~l~~~G------~~~~~~------------------- 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARD-LLAQWMEEAG------LTVSVD------------------- 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHH-HHHHHHHHcC------CEEEEc-------------------
Confidence 457899999999999762 4455777778999 9999999998 455542
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q 002402 157 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE 236 (927)
Q Consensus 157 ~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~ 236 (927)
...|++++++|. ..+++.|++++|+|+||. .|.-|+..|+|++|++++.|++.+.+++.+|+|+|+.+||.
T Consensus 61 -----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 131 (412)
T PRK12893 61 -----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEG 131 (412)
T ss_pred -----CCCcEEEEeCCC---CCCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccc
Confidence 124999999874 123578999999999984 57789999999999999999988777899999999999998
Q ss_pred C-----ccchHHHHhcCC
Q 002402 237 G-----LNGAHSFVTQHP 249 (927)
Q Consensus 237 G-----l~GS~~fv~~h~ 249 (927)
| +.|+..+..+++
T Consensus 132 g~~~~~~~G~~~~~~~~~ 149 (412)
T PRK12893 132 ARFAPAMLGSGVFTGALP 149 (412)
T ss_pred cccccccccHHHHhCcCC
Confidence 6 889998885543
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.26 E-value=1.3e-10 Score=134.27 Aligned_cols=145 Identities=20% Similarity=0.273 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVGSD-ALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~-~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
.+++.+.|++|.++ |-..+.+ +++++.+ ||.++|+++| ++++++.... ....
T Consensus 36 ~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~-~l~~~L~~~G------~~v~~~~~~~-------------------~~~~ 88 (410)
T PRK06133 36 QPAYLDTLKELVSI-ESGSGDAEGLKQVAA-LLAERLKALG------AKVERAPTPP-------------------SAGD 88 (410)
T ss_pred HHHHHHHHHHHHcC-CCCCCCHHHHHHHHH-HHHHHHHhCC------CeEEEEccCC-------------------CCCC
Confidence 35777888888886 3333333 3347899 9999999998 5555432110 1236
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEE
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 227 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-----------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~Iv 227 (927)
|++++++|. +.+.|++.+|+|+|+. +.|+.|+.+|++++|++++.|++.+.++..+|+
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999763 2467999999999974 378999999999999999999987666778999
Q ss_pred EEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 228 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 228 Flf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
|+|..+||.|..|++.++++.. .+...+|++|...
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~~ 198 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPGR 198 (410)
T ss_pred EEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCCC
Confidence 9999999999899999997643 2456788888543
No 19
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.22 E-value=2.6e-10 Score=132.16 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 87 FEAIKHVKALTELGPHPVGSD-ALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~-~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
+++.+.+++|.++. -+.+.. +.+++.+ ||.++|+++| ++++.+... ....|
T Consensus 13 ~~~~~~l~~Lv~i~-S~s~~~~~e~~~a~-~l~~~l~~~G------~~~~~~~~~--------------------~~~~n 64 (421)
T PRK08596 13 DELLELLKTLVRFE-TPAPPARNTNEAQE-FIAEFLRKLG------FSVDKWDVY--------------------PNDPN 64 (421)
T ss_pred HHHHHHHHHHhcCC-CCCCCchhHHHHHH-HHHHHHHHCC------CeEEEEEcc--------------------CCCce
Confidence 57888899998862 222222 3347788 9999999998 455543110 12369
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
|+++++|+. ....+.|++.+|+|+|+. +.|+.|+.+|+|++|.+++.|.+.+..++.
T Consensus 65 via~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~ 142 (421)
T PRK08596 65 VVGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPG 142 (421)
T ss_pred EEEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 999998741 122367999999999864 279999999999999999999988777889
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
+|.|+|..+||.|..|++.++++.. ....+|+.|..+
T Consensus 143 ~v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~~ 179 (421)
T PRK08596 143 DLIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTSD 179 (421)
T ss_pred cEEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCCC
Confidence 9999999999999999999986643 346788888643
No 20
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.19 E-value=2.2e-10 Score=130.34 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEE
Q 002402 91 KHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRI 170 (927)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i 170 (927)
+.|++|.++..-...|.++.++++ ||.++|+++| ++++...... + ......|+++.+
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~-~l~~~l~~~G------~~~~~~~~~~--------~--------~~~~~~~~~~~~ 58 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIAN-YIKDLLREFG------FSTDVIEITD--------D--------RLKVLGKVVVKE 58 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHH-HHHHHHHHCC------CceEEEecCc--------h--------hcccccceEEec
Confidence 456777775221113445568899 9999999998 4554431110 0 001224778887
Q ss_pred cCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 002402 171 QPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFL 229 (927)
Q Consensus 171 ~G~~~~~~~~~~VLl~AHyDSv~~s---------------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFl 229 (927)
.|+ .+++.|++.+|+|+|+.. .|+.|+.+|+|++|++++.|.+.+.+++++|+|+
T Consensus 59 ~g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~ 134 (375)
T TIGR01910 59 PGN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQ 134 (375)
T ss_pred cCC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEE
Confidence 764 245789999999999863 5899999999999999999998766788999999
Q ss_pred EeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 230 FNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 230 f~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
|+.+||.|..|++.++++ ...++...+|..|..|
T Consensus 135 ~~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~~ 168 (375)
T TIGR01910 135 SVVDEESGEAGTLYLLQR-GYFKDADGVLIPEPSG 168 (375)
T ss_pred EEcCcccCchhHHHHHHc-CCCCCCCEEEECCCCC
Confidence 999999999999999964 3333466777777553
No 21
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.19 E-value=2.7e-10 Score=129.63 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 86 EFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
++++.+.|++|.++ |-+ |..+.++++ ||.++|+++| ++++.+... ....|
T Consensus 1 ~~~~~~~l~~Lv~i-~s~--s~~e~~~~~-~l~~~l~~~G------~~~~~~~~~--------------------~~~~~ 50 (377)
T PRK08588 1 EEEKIQILADIVKI-NSV--NDNEIEVAN-YLQDLFAKHG------IESKIVKVN--------------------DGRAN 50 (377)
T ss_pred ChHHHHHHHHHhcC-CCC--CCcHHHHHH-HHHHHHHHCC------CceEEEecC--------------------CCCce
Confidence 36788999999985 323 333457888 9999999998 455443210 13469
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
+++++ |. .++.|++.+|+|+|+. +.|+.|+..|+|+||++++.|.+.+..++.
T Consensus 51 l~a~~-g~-----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~ 124 (377)
T PRK08588 51 LVAEI-GS-----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNG 124 (377)
T ss_pred EEEEe-CC-----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCC
Confidence 99998 42 2268999999999985 368899999999999999999987777889
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
+|.|+|..+||.|..|++.++++ .+.+++.++|..|..
T Consensus 125 ~i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep~ 162 (377)
T PRK08588 125 TIRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEPS 162 (377)
T ss_pred cEEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecCC
Confidence 99999999999999999999964 344455666666643
No 22
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.19 E-value=1.9e-10 Score=125.19 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=123.7
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCc----
Q 002402 163 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGL---- 238 (927)
Q Consensus 163 ~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl---- 238 (927)
..|+|+-= + ..++.++++||.|||. .|+.||..|++...|+++.|...+ ..+-++.|++||.|+
T Consensus 178 ~y~~Ia~~-~-----~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVD-G-----GENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEec-C-----CCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 45666532 2 3456899999999997 699999999999999999998753 557788899999885
Q ss_pred -----cchHHHHhcCCccCCceEEEEeccCCCCCCccceecCCCHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchH
Q 002402 239 -----NGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ 313 (927)
Q Consensus 239 -----~GS~~fv~~h~~~~~i~a~INLD~~G~gG~~~lfq~g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~ 313 (927)
.||+.|.++.+-.+++.+.+|+|.+|.+-.. . ..-|.|.+...+..+....+ ++. -.|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~lv---~-~~~P~L~e~~~~~g~~~ves---pe~--------y~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCLV---A-SGAPQLVEHALEAGAVEVES---PEP--------YCDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccchh---h-hcChHHHHHHHHhCCceecC---CCc--------ccchh
Confidence 5899999887778899999999999975322 1 22467777666653322221 222 24666
Q ss_pred HhhhcCCCeEEEEEeeCC---CCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhc
Q 002402 314 VYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 366 (927)
Q Consensus 314 ~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~la~ 366 (927)
.+.. .|||++.+....+ +..|||+.||+... ...-.++.++.++++
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~------~n~~t~~d~a~r~v~ 359 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASW------DNAWTAVDAAVRTVT 359 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCchhH------HHHHHHHHHHHHHHh
Confidence 6766 8999999987653 56899999999533 233455666667765
No 23
>PRK07473 carboxypeptidase; Provisional
Probab=99.18 E-value=5.5e-10 Score=127.68 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002402 84 FSEFEAIKHVKALTELGPHPVGSDAL-DRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 162 (927)
Q Consensus 84 fs~~rA~~~L~~L~~igpr~~GS~~n-~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~ 162 (927)
++.+++.+.|++|.++. =+.+.+++ .++.+ ||.++|+++| ++++.+. .. . ..
T Consensus 8 ~~~~~~~~~l~~Lv~i~-S~s~~~~~~~~~~~-~l~~~l~~~G------~~~~~~~--~~------~-----------~~ 60 (376)
T PRK07473 8 FDSEAMLAGLRPWVECE-SPTWDAAAVNRMLD-LAARDMAIMG------ATIERIP--GR------Q-----------GF 60 (376)
T ss_pred cCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHH-HHHHHHHHcC------CeEEEec--CC------C-----------CC
Confidence 56889999999999873 34454443 36788 9999999998 4555431 10 0 01
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 002402 163 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 225 (927)
Q Consensus 163 ~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-----------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~ 225 (927)
..|+++++.+. ...++.|++++|+|+|+. ++|+.|+.+|+|+||.+++.|.+.+.+++.+
T Consensus 61 ~~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~ 137 (376)
T PRK07473 61 GDCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLP 137 (376)
T ss_pred CCeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCC
Confidence 25899998653 124578999999999942 4899999999999999999998876566678
Q ss_pred EEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 226 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 226 IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
|.|+|+.+||.|..|++.+++++.. +..++|..|..+
T Consensus 138 v~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 138 ITVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 9999999999999999999976433 346788888664
No 24
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.14 E-value=1.3e-09 Score=121.16 Aligned_cols=239 Identities=19% Similarity=0.196 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHh----cCCCCCC-CHHHH--HHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccc
Q 002402 83 GFSEFEAIKHVKALTE----LGPHPVG-SDALD--RALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMG 155 (927)
Q Consensus 83 ~fs~~rA~~~L~~L~~----igpr~~G-S~~n~--~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~ 155 (927)
..+-++..+||..+-+ |..|+.. ++... .+.+ +++++. ..+++|.+|.-..+ |
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~~-----~~~~L~---dg~Y~V~IdS~l~~-------G----- 115 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSHN-----QLDALP---DGEYEVVIDSTLED-------G----- 115 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--HH-----HHHT-----SSEEEEEEEEEEES-------------
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCHH-----HHhhCC---CCceEEEEeeeecC-------C-----
Confidence 4678888899888866 3334332 22222 2222 333443 24588888753321 1
Q ss_pred ccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 002402 156 RTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 235 (927)
Q Consensus 156 ~~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE 235 (927)
...|. -..++|+ +++.|++++|.+|.. -|+||.||+|++.++||.|++. +.+.+.+|+|-.
T Consensus 116 -~L~yg-----E~~ipG~-----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P--- 176 (386)
T PF09940_consen 116 -SLTYG-----EFVIPGE-----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP--- 176 (386)
T ss_dssp -EEEEE-----EEEE--S-----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE----
T ss_pred -ceeEE-----EEEecCC-----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc---
Confidence 12222 2345774 667899999999974 6999999999999999999975 456999999998
Q ss_pred CCccchHHHHhcCCc--cCCceEEEEeccCCCCCCccceecCCCHHHHHH-HHHHhcCCCCcchhhhhhccCCCCCCCch
Q 002402 236 EGLNGAHSFVTQHPW--STTIRVAIDLEAMGIGGKSGLFQAGPHPWAVEN-FAAAAKYPSGQVTAQDLFASGAITSATDF 312 (927)
Q Consensus 236 ~Gl~GS~~fv~~h~~--~~~i~a~INLD~~G~gG~~~lfq~g~~~~li~~-y~~~a~~p~~~~l~~e~f~~g~ips~TD~ 312 (927)
+-.||-.|+.+|.. .+++++.++|.++|..|.-...++.....+++. .....++-... ... ..+.|.++|.
T Consensus 177 -eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~~---~~~--~~F~~~GsDE 250 (386)
T PF09940_consen 177 -ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGPN---FKI--YDFLPRGSDE 250 (386)
T ss_dssp -TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS----EEE--E---S-SSTH
T ss_pred -ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCCC---ceE--ecccccCCCc
Confidence 46899999999864 345999999999998764433332222334433 22221111100 011 1256788999
Q ss_pred HHhhhcCC--CeEEEEEee--CCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 002402 313 QVYKEVAG--LSGLDFAYT--DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 367 (927)
Q Consensus 313 ~~F~~~~G--IPgld~a~~--~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~la~s 367 (927)
++|-. -| +|-..+.-. +..+-|||..|+++.|+++.|+..-+.++.++..|-+.
T Consensus 251 RQfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 251 RQFCS-PGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp HHHTS-TTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred ceeec-CCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99986 33 554444321 23457999999999999999999999999999888764
No 25
>PRK07906 hypothetical protein; Provisional
Probab=99.13 E-value=3.9e-10 Score=130.72 Aligned_cols=130 Identities=24% Similarity=0.339 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002402 90 IKHVKALTELGPHPV---GSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 166 (927)
Q Consensus 90 ~~~L~~L~~igpr~~---GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NV 166 (927)
.+.|++|.+|..-.. .+++++++++ ||.++++++| ++++.+... .+..|+
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~-~l~~~l~~~G------~~~~~~~~~--------------------~~~~nv 54 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAE-YVAEKLAEVG------LEPTYLESA--------------------PGRANV 54 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHH-HHHHHHHhCC------CCeEEeecC--------------------CCceEE
Confidence 466778877532111 1245568899 9999999998 455543100 134699
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 002402 167 VLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 226 (927)
Q Consensus 167 Ia~i~G~~~~~~~~~~VLl~AHyDSv~~--------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~I 226 (927)
+++++|+ ....+.|++++|+|+|+. +.|+.|+..|++++|++++.+++.+..++++|
T Consensus 55 ~~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i 131 (426)
T PRK07906 55 VARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDL 131 (426)
T ss_pred EEEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccE
Confidence 9999774 123467999999999975 26999999999999999999998877889999
Q ss_pred EEEEeCCCCCC-ccchHHHHhcCC
Q 002402 227 IFLFNTGEEEG-LNGAHSFVTQHP 249 (927)
Q Consensus 227 vFlf~~aEE~G-l~GS~~fv~~h~ 249 (927)
.|+|+.+||.| ..|++.++++++
T Consensus 132 ~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 132 VFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred EEEEecCcccchhhhHHHHHHHHH
Confidence 99999999996 569999986653
No 26
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.13 E-value=6e-10 Score=131.20 Aligned_cols=137 Identities=19% Similarity=0.335 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 86 EFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
.+|+++.|++|.++ |++ |.+++++++ ||.++++++| ++++.+ +..|
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~-~l~~~l~~~G------~~~~~~------------------------~~~n 48 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSN-FIVNWAKKLG------LEVKQD------------------------EVGN 48 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHH-HHHHHHHHcC------CeEEEe------------------------CCCe
Confidence 47899999999997 555 555567889 9999999998 555554 2359
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccCC------------------------CCCC---CChhHHHHHHHHHHHHHhc
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFAA------------------------EGAG---DCSSCVAVMLELARAMSQW 218 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~s------------------------pGA~---Dn~sGVA~mLElaR~L~~~ 218 (927)
++++++|.. +....+.|++++|+|+|+.+ +|+. |++.|+|++|++++. .
T Consensus 49 ~~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~ 124 (477)
T TIGR01893 49 VLIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N 124 (477)
T ss_pred EEEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C
Confidence 999998742 11244789999999999742 4553 999999999999875 2
Q ss_pred CCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 219 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 219 ~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
..++++|.++|+.+||.|+.||+.+..+. . ....++|.|..+
T Consensus 125 -~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~-~--~~~~~~~~d~~~ 166 (477)
T TIGR01893 125 -NLKHPPLELLFTVDEETGMDGALGLDENW-L--SGKILINIDSEE 166 (477)
T ss_pred -CCCCCCEEEEEEeccccCchhhhhcChhh-c--CCcEEEEecCCC
Confidence 23566999999999999999999997432 2 335688888543
No 27
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.12 E-value=1.6e-09 Score=120.38 Aligned_cols=199 Identities=19% Similarity=0.205 Sum_probs=135.9
Q ss_pred cccceEEEEEc-CCCC--CcCCCCEEEEEeecccccC----CCCCCCChhHHHHHHHHHHHHHhc----CCCCCCcEEEE
Q 002402 161 SDLNHIVLRIQ-PKYA--SEAAENAILVSSHIDTVFA----AEGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFL 229 (927)
Q Consensus 161 ~~~~NVIa~i~-G~~~--~~~~~~~VLl~AHyDSv~~----spGA~Dn~sGVA~mLElaR~L~~~----~~~p~~~IvFl 229 (927)
....||.+++. |-.. ....-+.|++.||||+.+. ++||+-|||||+++||++|.+++. ....++++.|+
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~ 270 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFI 270 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEE
Confidence 47889999998 4210 0134589999999999754 689999999999999999999982 34678999999
Q ss_pred EeCCCCCCccchHHHHhcCC--ccCCceEEEEeccCCCCCCccceecC-C--CHHHHHHHH----HHhcCCCCcchhhhh
Q 002402 230 FNTGEEEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAG-P--HPWAVENFA----AAAKYPSGQVTAQDL 300 (927)
Q Consensus 230 f~~aEE~Gl~GS~~fv~~h~--~~~~i~a~INLD~~G~gG~~~lfq~g-~--~~~li~~y~----~~a~~p~~~~l~~e~ 300 (927)
.++|--...+|++.|++-.. .++++..+|++|++|.+..+.....+ | +...+..+- ..+++-.-.. ...
T Consensus 271 lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v--~~k 348 (555)
T KOG2526|consen 271 LTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEV--VTK 348 (555)
T ss_pred EccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEE--EEE
Confidence 99999999999999996432 35799999999999987555433322 2 223333332 2233221000 000
Q ss_pred hccCCCCC-----CCchHHhhhcCCCeEEEEEeeCC--CCCCCCCC-CCcCCCCHhHHHHHHHHHHHHHHHH
Q 002402 301 FASGAITS-----ATDFQVYKEVAGLSGLDFAYTDK--SAVYHTKN-DKLDLLKPGSLQHLGENMLAFLLQA 364 (927)
Q Consensus 301 f~~g~ips-----~TD~~~F~~~~GIPgld~a~~~~--~~~YHT~~-Dt~d~id~~slq~~g~~vl~lv~~l 364 (927)
-+ .|.- .=.|.-|.- ..+|++.+..... .+...+.. |+...+|.++|-+....+.+.+...
T Consensus 349 hk--kInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla~~ 417 (555)
T KOG2526|consen 349 HK--KINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALAGY 417 (555)
T ss_pred ee--eEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHHHH
Confidence 11 1211 124666665 7899999987643 23455666 9999999998887666665544443
No 28
>PRK07338 hypothetical protein; Provisional
Probab=99.10 E-value=1.5e-09 Score=124.63 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVGS-DALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS-~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
.+++.+.|++|.++. -..+. ++..++.+ ||.++|+++| +++++...... . .. ...+.........
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~-~l~~~l~~~G------~~~~~~~~~~~--~--~~--~~~~~~~~~~~~~ 81 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAE-LLADAFAALP------GEIELIPLPPV--E--VI--DADGRTLEQAHGP 81 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHH-HHHHHHHhCC------CcEEEecCCcc--c--cc--cccccccccCcCC
Confidence 467778888888762 22222 23357888 9999999998 44543211100 0 00 0000000112347
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEE
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 227 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-----------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~Iv 227 (927)
|+++++.|. .++.|++++|+|+||. ++|+.|+.+|+|++|++++.|.+.+..++.+|.
T Consensus 82 nl~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~ 156 (402)
T PRK07338 82 ALHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYD 156 (402)
T ss_pred eEEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEE
Confidence 999999653 2245999999999974 268999999999999999999887666778999
Q ss_pred EEEeCCCCCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 228 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 228 Flf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
|+|..+||.|..|++.++.++.. +..+.+.+|..
T Consensus 157 ~~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 157 VLINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 99999999999999999876542 34567777764
No 29
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.08 E-value=1.4e-09 Score=122.75 Aligned_cols=134 Identities=22% Similarity=0.216 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 85 SEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 85 s~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
.++++.+.+++|.++. -+ |..+.++++ ||.++|+++| ++++.+ +..
T Consensus 4 ~~~~~~~~l~~Lv~i~-s~--s~~e~~~~~-~l~~~l~~~G------~~~~~~------------------------~~~ 49 (348)
T PRK04443 4 SALEARELLKGLVEIP-SP--SGEEAAAAE-FLVEFMESHG------REAWVD------------------------EAG 49 (348)
T ss_pred chHHHHHHHHHHHcCC-CC--CCChHHHHH-HHHHHHHHcC------CEEEEc------------------------CCC
Confidence 3578999999999862 23 334458899 9999999998 455432 235
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 232 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~ 232 (927)
|+++++.+ .++.|++++|+|+|+. +.|+.|+..|+|++|++++.| + .+++.+|.|++..
T Consensus 50 n~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~ 120 (348)
T PRK04443 50 NARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAV 120 (348)
T ss_pred cEEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEc
Confidence 89998732 2368999999999974 489999999999999999999 3 4678899999999
Q ss_pred CCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 233 GEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 233 aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
+||.|..|...++.+. . +..++|+.|..+
T Consensus 121 dEE~g~~~~~~~l~~~-~--~~d~~iv~Ept~ 149 (348)
T PRK04443 121 EEEAPSSGGARLVADR-E--RPDAVIIGEPSG 149 (348)
T ss_pred ccccCChhHHHHHHhc-c--CCCEEEEeCCCC
Confidence 9999888777766443 2 456778887444
No 30
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.07 E-value=3.4e-09 Score=122.73 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVGS-DALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS-~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
.+++.+.+++|.++.. .... .+.+++.+ ||.++|+++| ++++.+...... + ...+....
T Consensus 13 ~~~~~~~l~~Lv~i~S-~~~~g~~e~~~~~-~l~~~l~~~G------~~~~~~~~~~~~------~------~~~~~~~~ 72 (427)
T PRK13013 13 RDDLVALTQDLIRIPT-LNPPGRAYREICE-FLAARLAPRG------FEVELIRAEGAP------G------DSETYPRW 72 (427)
T ss_pred HHHHHHHHHHHhcCCC-cCCCCccHHHHHH-HHHHHHHHCC------CceEEEecCCCC------c------ccccCCcc
Confidence 3577888888888622 1111 22347889 9999999998 455543211000 0 00112357
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 225 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~ 225 (927)
|++++++|+ .+++.|++.+|+|+||. ++|+.|+.+|+|++|.+++.|++.+.+++.+
T Consensus 73 nlia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 148 (427)
T PRK13013 73 NLVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGS 148 (427)
T ss_pred eEEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCcc
Confidence 999999774 24578999999999974 2699999999999999999999877677889
Q ss_pred EEEEEeCCCCCCcc-chHHHHhcCCccC--CceEEEEeccCC
Q 002402 226 VIFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAIDLEAMG 264 (927)
Q Consensus 226 IvFlf~~aEE~Gl~-GS~~fv~~h~~~~--~i~a~INLD~~G 264 (927)
|+|+|..+||.|.. |.+.++ +....+ ++.++|..|..+
T Consensus 149 v~~~~~~dEE~g~~~g~~~l~-~~~~~~~~~~d~~i~~ep~~ 189 (427)
T PRK13013 149 IEISGTADEESGGFGGVAYLA-EQGRFSPDRVQHVIIPEPLN 189 (427)
T ss_pred EEEEEEeccccCChhHHHHHH-hcCCccccCCCEEEEecCCC
Confidence 99999999998766 444444 333322 456777777443
No 31
>PRK07907 hypothetical protein; Provisional
Probab=99.06 E-value=3.2e-09 Score=124.04 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---HH-HHHHHHHHHHHHHHhhccccCCce-eEEEEEEeccCCcccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVGS---DA-LDRALQVYVFAAAQKIKETKHWEV-DVEVDFFHAKSGANRLVSGAFMGRTLIY 160 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS---~~-n~~a~~~yL~~~l~~ig~~~~~~~-~vevd~f~~~~g~~~~~g~~~~~~~~~y 160 (927)
.+++.+.|++|.++.. +.+. .+ .+++++ ||.++|+++| + ++++. ..
T Consensus 17 ~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~-~l~~~l~~~g------~~~~~~~--~~------------------- 67 (449)
T PRK07907 17 LPRVRADLEELVRIPS-VAADPFRREEVARSAE-WVADLLREAG------FDDVRVV--SA------------------- 67 (449)
T ss_pred HHHHHHHHHHHhcCCC-CCCCccchhhHHHHHH-HHHHHHHHcC------CceEEEE--ec-------------------
Confidence 4678888999988632 2221 12 347888 9999999998 3 34332 11
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcC
Q 002402 161 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWA 219 (927)
Q Consensus 161 ~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~ 219 (927)
....|+++++.++ .+.+.|++++|+|+||. ++|+.|+..|+|++|.+++.| .
T Consensus 68 ~~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~-- 140 (449)
T PRK07907 68 DGAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G-- 140 (449)
T ss_pred CCCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--
Confidence 1246999999764 24578999999999975 269999999999999999999 3
Q ss_pred CCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 220 HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 220 ~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
.+++++|.|++++.||.|..|++.+++++....+..++|..|..+
T Consensus 141 ~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 141 GDLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred cCCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 356789999999999999999999997764333446677766543
No 32
>PRK08262 hypothetical protein; Provisional
Probab=99.05 E-value=2.9e-09 Score=125.64 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCHHH-------HHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccc
Q 002402 81 KRGFSEFEAIKHVKALTELGPHPVGSDAL-------DRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAF 153 (927)
Q Consensus 81 ~~~fs~~rA~~~L~~L~~igpr~~GS~~n-------~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~ 153 (927)
+-.++.+++.+.|++|.++.. +.+.+++ .+..+ ||.++++++| .+++....
T Consensus 38 ~~~~~~~~~v~~L~~lv~i~S-~s~~~~~~~~~~~~~~~~~-~L~~~~~~~g------~~~~~~~~-------------- 95 (486)
T PRK08262 38 PVAVDEDAAAERLSEAIRFRT-ISNRDRAEDDAAAFDALHA-HLEESYPAVH------AALEREVV-------------- 95 (486)
T ss_pred CCcCCHHHHHHHHHHhcccce-eccCCCCcccHHHHHHHHH-HHHHhChhhh------ceeEEEEE--------------
Confidence 456889999999999998632 2332221 25778 9998888877 33333210
Q ss_pred ccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------------CCCCCCChhHHHHHHH
Q 002402 154 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------------AEGAGDCSSCVAVMLE 210 (927)
Q Consensus 154 ~~~~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-----------------------spGA~Dn~sGVA~mLE 210 (927)
+..|+++.+.|+ ....+.|++.+|+|+||. +.|+.|+.+|+|++|.
T Consensus 96 --------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~ 164 (486)
T PRK08262 96 --------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILE 164 (486)
T ss_pred --------CCccEEEEEECC---CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHH
Confidence 125888888774 122378999999999974 2599999999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhc
Q 002402 211 LARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 247 (927)
Q Consensus 211 laR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~ 247 (927)
+++.+.+.+..++.+|.|+|..+||.|..|++.+++.
T Consensus 165 A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 165 AAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred HHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 9999998776788999999999999998899988754
No 33
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.4e-08 Score=114.00 Aligned_cols=225 Identities=20% Similarity=0.246 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002402 87 FEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 166 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NV 166 (927)
++.++.|++|+++ +-++|.+. ++++ |++++|++++ .+++.| +..||
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~E~--eVr~-~~~~el~~~~------~ev~~D------------------------~lGnl 47 (355)
T COG1363 2 EELLELLKELLEA-PGPSGYEE--EVRD-VLKEELEPLG------DEVEVD------------------------RLGNL 47 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCcHH--HHHH-HHHHHHHHhC------CceEEc------------------------CCCcE
Confidence 3567889999984 44555433 6899 9999999998 355554 45799
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccCC---------------------------------------------------
Q 002402 167 VLRIQPKYASEAAENAILVSSHIDTVFAA--------------------------------------------------- 195 (927)
Q Consensus 167 Ia~i~G~~~~~~~~~~VLl~AHyDSv~~s--------------------------------------------------- 195 (927)
+++++|+ +..+.|++.||+|.++.-
T Consensus 48 ia~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~ 123 (355)
T COG1363 48 IAKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLK 123 (355)
T ss_pred EEEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccC
Confidence 9999884 344569999999998530
Q ss_pred --------------------------------C--------------------CCCCChhHHHHHHHHHHHHHhcCCCCC
Q 002402 196 --------------------------------E--------------------GAGDCSSCVAVMLELARAMSQWAHGFK 223 (927)
Q Consensus 196 --------------------------------p--------------------GA~Dn~sGVA~mLElaR~L~~~~~~p~ 223 (927)
+ =|-||-.||++|||++|.| + +..++
T Consensus 124 ~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~ 201 (355)
T COG1363 124 EEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELP 201 (355)
T ss_pred ccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCC
Confidence 1 1789999999999999999 4 56789
Q ss_pred CcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCCCCCC--------------cccee-c-CC-CHHHHHHHHH
Q 002402 224 NAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGK--------------SGLFQ-A-GP-HPWAVENFAA 286 (927)
Q Consensus 224 ~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G~gG~--------------~~lfq-~-g~-~~~li~~y~~ 286 (927)
.++.|+|+.-||.|+.||+....+- +-..+|.+|..+.+.. .+.+. . +. ++.+.+...+
T Consensus 202 ~~vy~v~tvqEEVGlrGA~~~a~~i----~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~ 277 (355)
T COG1363 202 ADVYFVASVQEEVGLRGAKTSAFRI----KPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLE 277 (355)
T ss_pred ceEEEEEecchhhccchhhcccccc----CCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 9999999999999999999887322 3356777777766433 12122 1 22 5666666555
Q ss_pred HhcCCCCcchhhhhhccCCCC-CCCchHHhhhc-CCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHH
Q 002402 287 AAKYPSGQVTAQDLFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQA 364 (927)
Q Consensus 287 ~a~~p~~~~l~~e~f~~g~ip-s~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~l 364 (927)
.|+. .+- -+|....| .+||-..+... .|+|...++.. -.+-|++. +.++.+.+.+..+.+.+++..+
T Consensus 278 ~A~~-~~I-----p~Q~~v~~~ggTDA~a~~~~g~gvpta~Igip--~ry~Hs~~---e~~~~~D~~~~~~Ll~~~i~~~ 346 (355)
T COG1363 278 LAEK-NNI-----PYQVDVSPGGGTDAGAAHLTGGGVPTALIGIP--TRYIHSPV---EVAHLDDLEATVKLLVAYLESL 346 (355)
T ss_pred HHHH-cCC-----CeEEEecCCCCccHHHHHHcCCCCceEEEecc--cccccCcc---eeecHHHHHHHHHHHHHHHHhc
Confidence 5432 111 12222334 57998887663 47999988753 23457754 4566777777777777777765
Q ss_pred hc
Q 002402 365 AS 366 (927)
Q Consensus 365 a~ 366 (927)
..
T Consensus 347 ~~ 348 (355)
T COG1363 347 DR 348 (355)
T ss_pred ch
Confidence 54
No 34
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.05 E-value=3.8e-09 Score=120.85 Aligned_cols=149 Identities=18% Similarity=0.180 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCcccccccccccccccccc
Q 002402 87 FEAIKHVKALTELGPHPVGS---DALDRALQVYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRTLIYSD 162 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS---~~n~~a~~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~~~y~~ 162 (927)
+++.+.|++|.++.. +.+. .++.++++ ||.++|+++| ++ ++....... ......
T Consensus 5 ~~~~~~l~~lv~i~s-~s~~~~~~~e~~~~~-~l~~~l~~~G------~~~~~~~~~~~~--------------~~~~~~ 62 (400)
T PRK13983 5 DEMIELLSELIAIPA-VNPDFGGEGEKEKAE-YLESLLKEYG------FDEVERYDAPDP--------------RVIEGV 62 (400)
T ss_pred HHHHHHHHHHhCcCC-CCCCCCCccHHHHHH-HHHHHHHHcC------CceEEEEecCCc--------------ccccCC
Confidence 578889999988632 1121 23457888 9999999998 44 433211000 000011
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002402 163 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 221 (927)
Q Consensus 163 ~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~ 221 (927)
..|++++++|. .+.+.|++++|+|+|+. +.|+.|+..|++++|++++.|.+.+.+
T Consensus 63 ~~nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIR 138 (400)
T ss_pred CccEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCC
Confidence 47999999774 23458999999999985 268999999999999999999987777
Q ss_pred CCCcEEEEEeCCCCCCcc-chHHHHhcCCc-cCCceEEEEec
Q 002402 222 FKNAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAIDLE 261 (927)
Q Consensus 222 p~~~IvFlf~~aEE~Gl~-GS~~fv~~h~~-~~~i~a~INLD 261 (927)
++.+|.|+|..+||.|.. |++.++++++. .....+++..|
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 889999999999998874 89999876532 22344555544
No 35
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.04 E-value=2.2e-09 Score=121.42 Aligned_cols=128 Identities=26% Similarity=0.297 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002402 88 EAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 167 (927)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVI 167 (927)
|.++.+++|.++ +.-|..+.++.+ ||.++|+++| ++++.+.... .+.+..|++
T Consensus 1 ~~~~~~~~l~~i---~s~s~~e~~~~~-~l~~~l~~~g------~~~~~~~~~~-----------------~~~~~~~~~ 53 (361)
T TIGR01883 1 RLKKYFLELIQI---DSESGKEKAILT-YLKKQITKLG------IPVSLDEVPA-----------------EVSNDNNLI 53 (361)
T ss_pred ChHHHHHHHeec---CCCCCcHHHHHH-HHHHHHHHcC------CEEEEecccc-----------------ccCCCceEE
Confidence 467888889885 233444558888 9999999998 4554431100 011357999
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccC--------------CCCC----CCChhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 002402 168 LRIQPKYASEAAENAILVSSHIDTVFA--------------AEGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFL 229 (927)
Q Consensus 168 a~i~G~~~~~~~~~~VLl~AHyDSv~~--------------spGA----~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFl 229 (927)
++++|+ .+++.|++++|+|+|+. +.|+ .|+.+|+|+||++++.|.+.+ .++.+|.|+
T Consensus 54 ~~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~ 128 (361)
T TIGR01883 54 ARLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFI 128 (361)
T ss_pred EEEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEE
Confidence 999775 23478999999999984 3566 799999999999999998764 467899999
Q ss_pred EeCCCCCCccchHHHHhc
Q 002402 230 FNTGEEEGLNGAHSFVTQ 247 (927)
Q Consensus 230 f~~aEE~Gl~GS~~fv~~ 247 (927)
|+.+||.|..|++.|...
T Consensus 129 ~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 129 FTVKEELGLIGMRLFDES 146 (361)
T ss_pred EEcccccCchhHhHhChh
Confidence 999999999999998753
No 36
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.03 E-value=4.2e-09 Score=124.25 Aligned_cols=139 Identities=19% Similarity=0.326 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002402 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 162 (927)
Q Consensus 83 ~fs~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~ 162 (927)
....++.++.+++|+++ |++.+. .+++++ ||.++++++| +++++| .
T Consensus 6 ~~~~~~~~~~l~~Lv~i-ps~S~~--e~~~~~-~l~~~~~~~G------~~~~~d------------------------~ 51 (485)
T PRK15026 6 QLSPQPLWDIFAKICSI-PHPSYH--EEQLAE-YIVGWAKEKG------FHVERD------------------------Q 51 (485)
T ss_pred hcCHHHHHHHHHHHhCC-CCCCCC--HHHHHH-HHHHHHHhCC------CEEEEE------------------------e
Confidence 35578899999999996 666543 348889 9999999998 556554 2
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC------------------------CCCC---CCChhHHHHHHHHHHHH
Q 002402 163 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------AEGA---GDCSSCVAVMLELARAM 215 (927)
Q Consensus 163 ~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~------------------------spGA---~Dn~sGVA~mLElaR~L 215 (927)
..|++++.++.. +....+.|++.+|+|+|+. +.|+ .|+++|+|++|++++
T Consensus 52 ~gnvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~-- 128 (485)
T PRK15026 52 VGNILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA-- 128 (485)
T ss_pred cCeEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH--
Confidence 259999886531 1134578999999999964 1677 499999999998763
Q ss_pred HhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 216 SQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 216 ~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
+.+. +..+|.++|+.+||.|+.||+.+.. .+ .+.+++||+|..
T Consensus 129 -~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~~-~~~~~~i~~e~~ 171 (485)
T PRK15026 129 -DENV-VHGPLEVLLTMTEEAGMDGAFGLQS--NW-LQADILINTDSE 171 (485)
T ss_pred -hCCC-CCCCEEEEEEcccccCcHhHHHhhh--cc-CCcCEEEEeCCC
Confidence 3332 3678999999999999999999963 22 457899999986
No 37
>PRK09104 hypothetical protein; Validated
Probab=99.03 E-value=4.1e-09 Score=123.66 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccc
Q 002402 85 SEFEAIKHVKALTELGPHPVGSD----ALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 160 (927)
Q Consensus 85 s~~rA~~~L~~L~~igpr~~GS~----~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y 160 (927)
..+++.+.|++|.+|.. ..+.+ +.+++.+ ||.++|+++| +++++.. .
T Consensus 15 ~~~~~~~~L~~lv~i~S-vs~~~~~~~~~~~~~~-~l~~~l~~~G------~~v~~~~--~------------------- 65 (464)
T PRK09104 15 NLDASLERLFALLRIPS-ISTDPAYAADCRKAAD-WLVADLASLG------FEASVRD--T------------------- 65 (464)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCccchHHHHHHHH-HHHHHHHHCC------CeEEEEe--c-------------------
Confidence 35688888999988632 22222 2346788 9999999998 4555421 1
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------------CCCCCCChhHHHHHHHHHHH
Q 002402 161 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------AEGAGDCSSCVAVMLELARA 214 (927)
Q Consensus 161 ~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~--------------------------spGA~Dn~sGVA~mLElaR~ 214 (927)
....||++++.|. ....+.|++++|+|+||. +.|+.|+..|+|++|++++.
T Consensus 66 ~~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~ 142 (464)
T PRK09104 66 PGHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRA 142 (464)
T ss_pred CCCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 0235999999764 124578999999999763 25789999999999999999
Q ss_pred HHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEecc
Q 002402 215 MSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 215 L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
|.+.+..++.+|.|++.++||.|..|...++.+.....+..++|..|.
T Consensus 143 l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 143 WKAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 998655677899999999999999999999865432224577888884
No 38
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.02 E-value=4.5e-09 Score=120.81 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002402 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 162 (927)
Q Consensus 83 ~fs~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~ 162 (927)
..-.+++.+.|++|.+|.. +.+..+.+++.+ ||.++|+++| ++++.. ... ..
T Consensus 5 ~~~~~~~~~~l~~lv~ipS-~~~~~~~~~~~~-~l~~~l~~~G------~~~~~~--~~~------------------~g 56 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINT-VQPNPDYAACVD-FLIKQADELG------LARKTI--EFV------------------PG 56 (400)
T ss_pred ccchHHHHHHHHHHhccCc-cCCCccHHHHHH-HHHHHHHhCC------CceeEE--Eec------------------CC
Confidence 4667889999999998732 223333457889 9999999998 344321 100 02
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002402 163 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 221 (927)
Q Consensus 163 ~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~ 221 (927)
..|++++++|+. ...+.|++++|+|+||. +.|+.|+.+|+|++|++++.|.+.+.+
T Consensus 57 ~~~l~~~~~g~~---~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGSN---PELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFK 133 (400)
T ss_pred ceeEEEEEecCC---CCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCC
Confidence 369999997741 22368999999999973 268999999999999999999987777
Q ss_pred CCCcEEEEEeCCCCCCc-cchHHHHhcCCccCCceEEEEec
Q 002402 222 FKNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLE 261 (927)
Q Consensus 222 p~~~IvFlf~~aEE~Gl-~GS~~fv~~h~~~~~i~a~INLD 261 (927)
++++|.|+|..+||.|- .|++.++++... ..+.+.+.+|
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~-~~~~~~~~~d 173 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKTDEF-KALNLGFALD 173 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHhhhc-cCCceEEEEc
Confidence 88999999999999875 699999854322 2334445444
No 39
>PRK06446 hypothetical protein; Provisional
Probab=99.02 E-value=4.3e-09 Score=122.55 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 87 FEAIKHVKALTELGPHPVGSD-ALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~-~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
.++.+.|++|.+|.. +.+.. +.+++.+ ||.++|+++| ++++.+. . ....|
T Consensus 2 ~~~~~~l~eLV~i~S-~s~~~~~~~~~a~-~l~~~l~~~G------~~ve~~~--~-------------------~~~~~ 52 (436)
T PRK06446 2 DEELYTLIEFLKKPS-ISATGEGIEETAN-YLKDTMEKLG------IKANIER--T-------------------KGHPV 52 (436)
T ss_pred hhHHHHHHHHhCCCC-CCCCcHhHHHHHH-HHHHHHHHCC------CeEEEEe--c-------------------CCCCE
Confidence 467888999988632 22222 2257888 9999999998 4555431 1 02369
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
+++++.+ .+++.|++++|+|+||. +.||.|+.+|+|++|.+++.+.+.+ .++.
T Consensus 53 lia~~~~-----~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~ 126 (436)
T PRK06446 53 VYGEINV-----GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNV 126 (436)
T ss_pred EEEEecC-----CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCC
Confidence 9999853 23468999999999873 2799999999999999999887654 5678
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
+|.|+|..+||.|..|++.++.+++..-+..++|. |..
T Consensus 127 ~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~-E~~ 164 (436)
T PRK06446 127 NVKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM-EGA 164 (436)
T ss_pred CEEEEEEcccccCCHhHHHHHHHHHHHhCCCEEEE-CCC
Confidence 99999999999999999999987652212345553 543
No 40
>PRK05469 peptidase T; Provisional
Probab=99.01 E-value=3.7e-09 Score=121.93 Aligned_cols=124 Identities=14% Similarity=0.203 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCCC--------CCCCHHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCccccccccccccc
Q 002402 87 FEAIKHVKALTELGPH--------PVGSDALDRALQVYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRT 157 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr--------~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~ 157 (927)
+.+.+.|++|.+|..- +.+ .+.+++++ ||.++|+++| ++ ++++
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~-~~~~~~a~-~l~~~l~~~G------~~~~~~~-------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPST-EGQWDLAK-LLVEELKELG------LQDVTLD-------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCC-HHHHHHHH-HHHHHHHHcC------CCeEEEC--------------------
Confidence 3567888888876321 111 34567888 9999999998 43 3332
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCC------------------------------------------
Q 002402 158 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA------------------------------------------ 195 (927)
Q Consensus 158 ~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~s------------------------------------------ 195 (927)
...||+++++|+. ..+.+.|++.+|+|+||..
T Consensus 54 ----~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 127 (408)
T PRK05469 54 ----ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQT 127 (408)
T ss_pred ----CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCC
Confidence 2358999997741 1245889999999999642
Q ss_pred ----CCC----CCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHH
Q 002402 196 ----EGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 245 (927)
Q Consensus 196 ----pGA----~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv 245 (927)
.|+ .|+.+|+|+||.+++.|++.+..++.+|+|+|..+||.| .|++.++
T Consensus 128 ~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~ 184 (408)
T PRK05469 128 LITTDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFD 184 (408)
T ss_pred EEEcCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhh
Confidence 255 999999999999999998865567789999999999998 8999886
No 41
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.00 E-value=5.5e-09 Score=117.71 Aligned_cols=134 Identities=27% Similarity=0.294 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhh-ccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKI-KETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~i-g~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
++++.+.+++|.++ |-+ |..++++.+ ||.++|+++ + .+++. ...
T Consensus 6 ~~~~~~~l~~li~i-ps~--s~~e~~~~~-~l~~~l~~~~~------~~~~~-------------------------~~~ 50 (352)
T PRK13007 6 AADLAELTAALVDI-PSV--SGDEKALAD-AVEAALRALPH------LEVIR-------------------------HGN 50 (352)
T ss_pred HHHHHHHHHHHhcC-CCC--CchHHHHHH-HHHHHHHhCcC------ceEEe-------------------------cCC
Confidence 36788999999885 434 444557888 999999996 4 33321 124
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 230 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~--------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf 230 (927)
|+++++.+. .++.|++.+|+|+|+. +.|+.|+.+|+|++|.+++.|. .++++|.|+|
T Consensus 51 ~~~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~ 121 (352)
T PRK13007 51 SVVARTDLG-----RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVF 121 (352)
T ss_pred eEEEEccCC-----CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEE
Confidence 899998432 2246999999999984 3899999999999999999993 3678999999
Q ss_pred eCCCCCCc--cchHHHHhcCCccCCceEEEEeccC
Q 002402 231 NTGEEEGL--NGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 231 ~~aEE~Gl--~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
.++||.|. .|+..++.+++...+..++|+.|..
T Consensus 122 ~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 122 YDCEEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred EecccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 99999864 5888888766544556788888854
No 42
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.00 E-value=7.5e-09 Score=119.83 Aligned_cols=157 Identities=22% Similarity=0.207 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 86 EFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
.+++.+.+++|.++ | .-|.++.++.+ ||.++|+++| +++++......... ....+......+....|
T Consensus 16 ~~~~~~~l~~lv~i-p--s~s~~e~~~~~-~l~~~l~~~G------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~n 82 (422)
T PRK06915 16 EEEAVKLLKRLIQE-K--SVSGDESGAQA-IVIEKLRELG------LDLDIWEPSFKKLK---DHPYFVSPRTSFSDSPN 82 (422)
T ss_pred HHHHHHHHHHHHhC-C--CCCcchHHHHH-HHHHHHHhcC------CeeEEeecchhhhh---cccccCCcccccCCCce
Confidence 36788889999885 2 33444558888 9999999998 44443211100000 00000000001123589
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
|+++++|. .+.+.|++.+|+|+||. +.|+.|+.+|+++||.+++.|++.+.+++.
T Consensus 83 lia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~ 158 (422)
T PRK06915 83 IVATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKG 158 (422)
T ss_pred EEEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999874 24578999999999974 279999999999999999999987767888
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEecc
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
+|.|++..+||.|..|+...+.+ .+ +..++|.-|.
T Consensus 159 ~v~~~~~~dEE~g~~G~~~~~~~-~~--~~d~~i~~ep 193 (422)
T PRK06915 159 DVIFQSVIEEESGGAGTLAAILR-GY--KADGAIIPEP 193 (422)
T ss_pred cEEEEEecccccCCcchHHHHhc-Cc--CCCEEEECCC
Confidence 99999999999988898887744 22 3345555553
No 43
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.00 E-value=6.2e-09 Score=120.88 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 86 EFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
.+++.+.|++|.+| +.-|.++.++++ ||.++|+++| ++++....... ......+ .......+.+..|
T Consensus 19 ~~~~~~~l~~li~i---pS~s~~e~~~~~-~l~~~l~~~G------~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~n 85 (427)
T PRK06837 19 FDAQVAFTQDLVRF---PSTRGAEAPCQD-FLARAFRERG------YEVDRWSIDPD-DLKSHPG--AGPVEIDYSGAPN 85 (427)
T ss_pred hHHHHHHHHHHhcc---CCCCCcHHHHHH-HHHHHHHHCC------CceEEecCCHH-Hhhhccc--ccccccccCCCce
Confidence 35667778888875 334445558889 9999999998 44433110000 0000000 0000011235689
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~s---------------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
|++++.|. ..+.+.|++.+|+|+||.+ .|+.|+..|++++|.+++.+++.+.++++
T Consensus 86 l~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~ 162 (427)
T PRK06837 86 VVGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAA 162 (427)
T ss_pred EEEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999874 1235789999999999863 49999999999999999999987777889
Q ss_pred cEEEEEeCCCCCCccchHHHHh
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVT 246 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~ 246 (927)
+|.|+|+.+||.+..|+...+.
T Consensus 163 ~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 163 RVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred cEEEEEEeccccCCHhHHHHHh
Confidence 9999999999988778877663
No 44
>PRK08201 hypothetical protein; Provisional
Probab=98.99 E-value=7.3e-09 Score=121.27 Aligned_cols=146 Identities=17% Similarity=0.174 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC--C-HHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVG--S-DALDRALQVYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRTLIYS 161 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~G--S-~~n~~a~~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~~~y~ 161 (927)
.+++.+.|++|.++..-..+ . .++.++++ ||.++|+++| ++ ++++. . .
T Consensus 13 ~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~-~l~~~l~~~G------~~~~~~~~--~-------------------~ 64 (456)
T PRK08201 13 REAHLEELKEFLRIPSISALSEHKEDVRKAAE-WLAGALEKAG------LEHVEIME--T-------------------A 64 (456)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcchHHHHHHHH-HHHHHHHHcC------CCeEEEEe--c-------------------C
Confidence 36778888888876321111 1 23347788 9999999998 32 33331 0 1
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCC
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 220 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~ 220 (927)
...||++++.|. .+.+.|++++|+|+||. +.|+.|+..|+|++|++++.+.+.+.
T Consensus 65 ~~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~ 140 (456)
T PRK08201 65 GHPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEG 140 (456)
T ss_pred CCCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcC
Confidence 235899988653 24568999999999873 27999999999999999999987555
Q ss_pred CCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 221 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 221 ~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
.++.+|.|++..+||.|..|+..++++++..-+..++|..|..
T Consensus 141 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 141 TLPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 6678999999999999999999999765321123567777754
No 45
>PRK13381 peptidase T; Provisional
Probab=98.99 E-value=6.1e-09 Score=120.03 Aligned_cols=124 Identities=15% Similarity=0.239 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCC-------CCCCHHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCcccccccccccccccc
Q 002402 89 AIKHVKALTELGPH-------PVGSDALDRALQVYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRTLIY 160 (927)
Q Consensus 89 A~~~L~~L~~igpr-------~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~~~y 160 (927)
+.+.+.++.+|... ...+++++++++ ||.++|+++| ++ +++|
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~G------~~~~~~~----------------------- 52 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAK-LLADELRELG------LEDIVID----------------------- 52 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHH-HHHHHHHHcC------CCcEEEc-----------------------
Confidence 45556666654221 122455668999 9999999998 32 2221
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEEeecccccCC---------------------------------------------
Q 002402 161 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA--------------------------------------------- 195 (927)
Q Consensus 161 ~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~s--------------------------------------------- 195 (927)
...||++++.|+. ...+.|++++|+|+||..
T Consensus 53 -~~~nvi~~~~g~~---~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (404)
T PRK13381 53 -EHAIVTAKLPGNT---PGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIF 128 (404)
T ss_pred -CCeEEEEEEecCC---CCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEe
Confidence 2359999998741 223789999999999743
Q ss_pred -CCC----CCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhc
Q 002402 196 -EGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 247 (927)
Q Consensus 196 -pGA----~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~ 247 (927)
.|+ .|+..|+|+||.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 129 GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 129 SDGTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCCccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 267 999999999999999998764 457799999999999999999999744
No 46
>PRK07522 acetylornithine deacetylase; Provisional
Probab=98.97 E-value=6.2e-09 Score=118.71 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002402 87 FEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 166 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NV 166 (927)
.++.+.|++|.+| |.+.|. ++.++.+ ||.++|+++| +++++.. .. .....||
T Consensus 4 ~~~~~~l~~lv~i-~S~s~~-~~~~~~~-~l~~~l~~~G------~~~~~~~--~~-----------------~~~~~nv 55 (385)
T PRK07522 4 MSSLDILERLVAF-DTVSRD-SNLALIE-WVRDYLAAHG------VESELIP--DP-----------------EGDKANL 55 (385)
T ss_pred hhHHHHHHHHhCC-CCcCCC-ccHHHHH-HHHHHHHHcC------CeEEEEe--cC-----------------CCCcccE
Confidence 4678889999986 333332 1237888 9999999998 4554421 10 0134699
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 002402 167 VLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 226 (927)
Q Consensus 167 Ia~i~G~~~~~~~~~~VLl~AHyDSv~~--------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~I 226 (927)
++++.++ ..+.|++.+|+|+|+. +.|+.|+..|+|++|++++.|.+. +++++|
T Consensus 56 ~a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i 128 (385)
T PRK07522 56 FATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPL 128 (385)
T ss_pred EEEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCE
Confidence 9998542 3468999999999863 379999999999999999999875 467899
Q ss_pred EEEEeCCCCCCccchHHHHhcCCc-cCCceEEEEeccC
Q 002402 227 IFLFNTGEEEGLNGAHSFVTQHPW-STTIRVAIDLEAM 263 (927)
Q Consensus 227 vFlf~~aEE~Gl~GS~~fv~~h~~-~~~i~a~INLD~~ 263 (927)
.|+|..+||.|..|++.++.+... ..+..++|..|..
T Consensus 129 ~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep~ 166 (385)
T PRK07522 129 HLAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEPT 166 (385)
T ss_pred EEEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccCC
Confidence 999999999998999999865432 1234556665543
No 47
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=98.96 E-value=8.3e-09 Score=116.40 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 86 EFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
.+++.+.|++|.+|. +.|.+++++.+ ||.++|+++| ++++.+. ..|
T Consensus 9 ~~~~~~~l~~lv~i~---s~s~~e~~~~~-~l~~~l~~~g------~~~~~~~------------------------~~~ 54 (346)
T PRK00466 9 KQKAKELLLDLLSIY---TPSGNETNATK-FFEKISNELN------LKLEILP------------------------DSN 54 (346)
T ss_pred HHHHHHHHHHHhcCC---CCCCCHHHHHH-HHHHHHHHcC------CeEEEec------------------------CCC
Confidence 468999999999873 23444457888 9999999998 4555431 124
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 233 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~a 233 (927)
+++ .|. +.|++++|+|+||. ++|+.|+..|+|++|++++.+.+.+ .+|.|+|+.+
T Consensus 55 ~~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~d 121 (346)
T PRK00466 55 SFI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLAD 121 (346)
T ss_pred cEe--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcC
Confidence 432 231 35999999999984 3899999999999999999998754 3589999999
Q ss_pred CCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 234 EEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 234 EE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
||.|..|++.+++++ + +..++|..|..+
T Consensus 122 EE~g~~G~~~l~~~~-~--~~d~~i~~ep~~ 149 (346)
T PRK00466 122 EESTSIGAKELVSKG-F--NFKHIIVGEPSN 149 (346)
T ss_pred cccCCccHHHHHhcC-C--CCCEEEEcCCCC
Confidence 999989999999764 2 345677777654
No 48
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=98.95 E-value=8.3e-09 Score=116.59 Aligned_cols=137 Identities=20% Similarity=0.221 Sum_probs=99.1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002402 92 HVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 171 (927)
Q Consensus 92 ~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i~ 171 (927)
.|++|.+|.. +.+. ++.++++ ||.++|+++| ++++.+.... + ....||++++.
T Consensus 2 ~l~~lv~i~S-~s~~-~~~~~~~-~l~~~l~~~G------~~~~~~~~~~--------~----------~~~~nl~~~~~ 54 (364)
T TIGR01892 2 ILTKLVAFDS-TSFR-PNVDLID-WAQAYLEALG------FSVEVQPFPD--------G----------AEKSNLVAVIG 54 (364)
T ss_pred hHHHhhCcCC-cCCc-cHHHHHH-HHHHHHHHcC------CeEEEEeCCC--------C----------CccccEEEEec
Confidence 4667776521 2222 2247888 9999999998 5555542110 0 13579999985
Q ss_pred CCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 002402 172 PKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFN 231 (927)
Q Consensus 172 G~~~~~~~~~~VLl~AHyDSv~~--------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~ 231 (927)
|+ +.+.|++.+|+|+|+. +.|+.|+.+|+|++|.+++.|.+. +++++|.|+|.
T Consensus 55 ~~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~ 127 (364)
T TIGR01892 55 PS-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALT 127 (364)
T ss_pred CC-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEE
Confidence 42 3457999999999964 378999999999999999999874 46789999999
Q ss_pred CCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 232 TGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 232 ~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
.+||.|..|++.++++... +...++..|..+
T Consensus 128 ~~EE~g~~G~~~~~~~~~~--~~d~~i~~ep~~ 158 (364)
T TIGR01892 128 ADEEVGCTGAPKMIEAGAG--RPRHAIIGEPTR 158 (364)
T ss_pred eccccCCcCHHHHHHhcCC--CCCEEEECCCCC
Confidence 9999999999999976542 233455555433
No 49
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.95 E-value=8.1e-09 Score=119.41 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCCCCC--------CHHHHHHHHHHHHHHHHhhccccCCce-eEEEEEEeccCCccccccccccccc
Q 002402 87 FEAIKHVKALTELGPHPVG--------SDALDRALQVYVFAAAQKIKETKHWEV-DVEVDFFHAKSGANRLVSGAFMGRT 157 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~G--------S~~n~~a~~~yL~~~l~~ig~~~~~~~-~vevd~f~~~~g~~~~~g~~~~~~~ 157 (927)
+|+.+.+-++++|.. ++| +.+.++.++ ||.++|+++| + +|++|
T Consensus 3 ~~~~~~f~~~~~i~s-~s~~~~~~~ps~~~~~~~a~-~l~~~l~~lG------~~~v~~d-------------------- 54 (410)
T TIGR01882 3 EELLPRFLTYVKVNT-RSDENSDTCPSTPGQLTFGN-MLVDDLKSLG------LQDAHYD-------------------- 54 (410)
T ss_pred hHHHHHHHhhEEEec-ccCCCCCCCCCCHhHHHHHH-HHHHHHHHcC------CceEEEc--------------------
Confidence 577777777777632 222 334556777 9999999999 3 36665
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------------------------------
Q 002402 158 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------------- 194 (927)
Q Consensus 158 ~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~------------------------------------------- 194 (927)
.+..||+++++|.. ....+.|++.||+|||+.
T Consensus 55 ---~~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 129 (410)
T TIGR01882 55 ---EKNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQT 129 (410)
T ss_pred ---CCceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCce
Confidence 13579999998751 112388999999999972
Q ss_pred ---CCC----CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHh
Q 002402 195 ---AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 246 (927)
Q Consensus 195 ---spG----A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~ 246 (927)
+.| +.|+.+|+|+||++++.|++.+..++.+|.|+|+.+||.| .|++.+..
T Consensus 130 ~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 130 LITTDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred EEEcCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 111 3799999999999999998853345778999999999998 59988863
No 50
>PRK08652 acetylornithine deacetylase; Provisional
Probab=98.94 E-value=9.9e-09 Score=115.21 Aligned_cols=131 Identities=25% Similarity=0.278 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002402 87 FEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 166 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NV 166 (927)
|++.+.+++|.++ | .-|.++.++.+ ||.++|+++| ++++.+. . + +..|+
T Consensus 2 ~~~~~~~~~lv~i-p--s~s~~e~~~~~-~l~~~l~~~G------~~v~~~~--~--------~-----------~~~~~ 50 (347)
T PRK08652 2 ERAKELLKQLVKI-P--SPSGQEDEIAL-HIMEFLESLG------YDVHIES--D--------G-----------EVINI 50 (347)
T ss_pred hhHHHHHHHHhcC-C--CCCCchHHHHH-HHHHHHHHcC------CEEEEEe--c--------C-----------ceeEE
Confidence 6888999999985 2 33434457899 9999999998 5555431 0 1 23466
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q 002402 167 VLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 234 (927)
Q Consensus 167 Ia~i~G~~~~~~~~~~VLl~AHyDSv~~------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aE 234 (927)
++ + +++.|++.+|+|+++. +.|+.|+.+|+|+||++++.|.+. .++.+|.|+|..+|
T Consensus 51 ~~---~------~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dE 119 (347)
T PRK08652 51 VV---N------SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDE 119 (347)
T ss_pred Ec---C------CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCc
Confidence 65 3 2357999999999975 479999999999999999999864 34679999999999
Q ss_pred CCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 235 EEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 235 E~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
|.|..|++.++++++ ...+|..|..
T Consensus 120 E~g~~G~~~~~~~~~----~d~~i~~ep~ 144 (347)
T PRK08652 120 EEGGRGSALFAERYR----PKMAIVLEPT 144 (347)
T ss_pred ccCChhHHHHHHhcC----CCEEEEecCC
Confidence 998899999987643 1467777753
No 51
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.93 E-value=1.2e-08 Score=116.02 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002402 88 EAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 167 (927)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVI 167 (927)
++.+.+++|.++ +.-|..++++++ ||.++|+++| ++++... . ....|++
T Consensus 3 ~~~~~l~~Lv~i---ps~s~~e~~~~~-~l~~~l~~~G------~~~~~~~--~-------------------~~~~n~~ 51 (375)
T PRK13009 3 DVLELAQDLIRR---PSVTPDDAGCQD-LLAERLEALG------FTCERMD--F-------------------GDVKNLW 51 (375)
T ss_pred hHHHHHHHHhCC---CCCCCchhhHHH-HHHHHHHHcC------CeEEEec--c-------------------CCCcEEE
Confidence 466778888874 444555667889 9999999988 4444321 0 1246999
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 002402 168 LRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAV 226 (927)
Q Consensus 168 a~i~G~~~~~~~~~~VLl~AHyDSv~~s---------------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~~I 226 (927)
+++ |. +++.|++.+|+|+|+.+ .|+.|+.+|++++|++++.+.+.+.+++++|
T Consensus 52 ~~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i 125 (375)
T PRK13009 52 ARR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSI 125 (375)
T ss_pred EEe-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceE
Confidence 987 42 34689999999999742 5899999999999999999988776788999
Q ss_pred EEEEeCCCCCC-ccchHHHHhcCCc-cCCceEEEEecc
Q 002402 227 IFLFNTGEEEG-LNGAHSFVTQHPW-STTIRVAIDLEA 262 (927)
Q Consensus 227 vFlf~~aEE~G-l~GS~~fv~~h~~-~~~i~a~INLD~ 262 (927)
+|++..+||.+ ..|++.+++.... .....++|..|.
T Consensus 126 ~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 163 (375)
T PRK13009 126 AFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGEP 163 (375)
T ss_pred EEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEcCC
Confidence 99999999985 4699988743211 123455665553
No 52
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.93 E-value=5.2e-09 Score=106.76 Aligned_cols=165 Identities=26% Similarity=0.308 Sum_probs=115.7
Q ss_pred EEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCcc-chHH
Q 002402 184 LVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN-GAHS 243 (927)
Q Consensus 184 Ll~AHyDSv~~-------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~-GS~~ 243 (927)
|+.+|+|+|+. +.|++|+..|+++++.++|.+++.+..++.+|+|+|+.+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68899999991 589999999999999999999987788999999999999999998 9999
Q ss_pred HHhcC-CccCCceEEEEeccCCCCCCccceecCCCHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchHHhhh--cCC
Q 002402 244 FVTQH-PWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKE--VAG 320 (927)
Q Consensus 244 fv~~h-~~~~~i~a~INLD~~G~gG~~~lfq~g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~--~~G 320 (927)
++++. ....+...++..|..+.+.-. ...++.+++...++.+...+.. ......+..||...+.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEP-----PEPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSE-----EEEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhcc-----ccccceeccccchhhhhhhccc
Confidence 99763 122346666666655543211 2235556666665543333211 01113467899999995 478
Q ss_pred CeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHH
Q 002402 321 LSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 362 (927)
Q Consensus 321 IPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~ 362 (927)
+|.+.+.... ...|++... ++.+.+....+.+.++++
T Consensus 152 ~~~i~~G~~~--~~~H~~~E~---i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPDEY---IDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEEEESCE--ESTTSTT-E---EEHHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCCcE---ecHHHHHHHHHHHHHHHh
Confidence 8888775433 678887654 557777777777666654
No 53
>PRK07079 hypothetical protein; Provisional
Probab=98.93 E-value=1.4e-08 Score=119.54 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHH----HHHHhhccccCCceeEEEEEEeccCCcccccccccccccc
Q 002402 84 FSEFEAIKHVKALTELGPHPVGSDA-LDRALQVYVF----AAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 158 (927)
Q Consensus 84 fs~~rA~~~L~~L~~igpr~~GS~~-n~~a~~~yL~----~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~ 158 (927)
++++++.+.|++|.+|.. ..+.++ ...+++ ||. ++|+++| +++++. ....
T Consensus 14 ~~~~~~~~~L~~LV~ipS-vs~~~~~~~~~~~-~l~~~~~~~l~~~G------~~~~~~--~~~~--------------- 68 (469)
T PRK07079 14 FDSGAFFADLARRVAYRT-ESQNPDRAPALRA-YLTDEIAPALAALG------FTCRIV--DNPV--------------- 68 (469)
T ss_pred hccHHHHHHHHHHhccCC-CCCCcccHHHHHH-HHHHHHHHHHHHCC------CeEEEE--ecCC---------------
Confidence 444678999999998632 222222 235555 664 4677776 454432 1100
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEEeecccccC----------------------CCCCCCChhHHHHHHHHHHHHH
Q 002402 159 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA----------------------AEGAGDCSSCVAVMLELARAMS 216 (927)
Q Consensus 159 ~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~----------------------spGA~Dn~sGVA~mLElaR~L~ 216 (927)
..+..||++++.|. .+.+.|++++|+|+||. +.|+.|+.+|+|++|.+++.+.
T Consensus 69 -~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~ 143 (469)
T PRK07079 69 -AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVL 143 (469)
T ss_pred -CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHH
Confidence 01346999998553 24578999999999973 2699999999999999999986
Q ss_pred hc-CCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEecc
Q 002402 217 QW-AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 217 ~~-~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
+. +.+++.+|+|++..+||.|..|++.++++++...+..++|..|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~ 190 (469)
T PRK07079 144 AARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDG 190 (469)
T ss_pred HhcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCC
Confidence 53 35788999999999999999999999988742222456666664
No 54
>PRK07318 dipeptidase PepV; Reviewed
Probab=98.91 E-value=1.7e-08 Score=118.66 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------CHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVG---------SDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 156 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~G---------S~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 156 (927)
.+++.+.|++|.+|..-..+ -.++.++.+ ||.++++++| ++++..
T Consensus 13 ~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~-~l~~~~~~~G------~~~~~~------------------- 66 (466)
T PRK07318 13 KDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALE-KFLEIAERDG------FKTKNV------------------- 66 (466)
T ss_pred HHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHH-HHHHHHHHCC------CEEEEe-------------------
Confidence 35778888899886332111 123457888 9999999988 444321
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHh
Q 002402 157 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQ 217 (927)
Q Consensus 157 ~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-------------------spGA~Dn~sGVA~mLElaR~L~~ 217 (927)
.|++++++.. ...+.|++.+|+|+||. +.|+.|+..|+|+++.+++.|++
T Consensus 67 -------~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~ 135 (466)
T PRK07318 67 -------DNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE 135 (466)
T ss_pred -------cCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH
Confidence 2555555431 13357999999999974 37999999999999999999998
Q ss_pred cCCCCCCcEEEEEeCCCCCCccchHHHHhcCC
Q 002402 218 WAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 249 (927)
Q Consensus 218 ~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~ 249 (927)
.+.+++.+|.|+|+.+||.|..|++.++++++
T Consensus 136 ~g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 136 LGLPLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred cCCCCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 87778889999999999999999999997764
No 55
>PRK07205 hypothetical protein; Provisional
Probab=98.90 E-value=1.8e-08 Score=117.65 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc
Q 002402 85 SEFEAIKHVKALTELGPHPVGS--------DALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 156 (927)
Q Consensus 85 s~~rA~~~L~~L~~igpr~~GS--------~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 156 (927)
+.+++.+.|++|.++.. ..+. ++-.++.+ |+.++++++| ++++++.
T Consensus 9 ~~~~~~~~l~~lv~i~S-~s~~~~~~~~~~~~~~~~~~-~~~~~l~~~g------~~~~~~~------------------ 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPS-VLNEGENGTPFGQAIQDVLE-ATLDLCQGLG------FKTYLDP------------------ 62 (444)
T ss_pred hHHHHHHHHHHHccccc-ccCCCcCCCCCchhHHHHHH-HHHHHHHhCC------CEEEEcC------------------
Confidence 55788888999988632 1221 22256788 9999999988 4554430
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHH
Q 002402 157 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAM 215 (927)
Q Consensus 157 ~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L 215 (927)
...|+++++ |. .++.|++++|+|+||. +.|+.|+..|+|++|++++.|
T Consensus 63 -----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l 131 (444)
T PRK07205 63 -----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKAL 131 (444)
T ss_pred -----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHH
Confidence 112556665 42 3367999999999975 279999999999999999999
Q ss_pred HhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCC
Q 002402 216 SQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 249 (927)
Q Consensus 216 ~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~ 249 (927)
.+.+.+++++|.|+|.++||.|..|++.|+.+.+
T Consensus 132 ~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 132 LDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred HHcCCCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 9887788899999999999999999999986543
No 56
>PRK05111 acetylornithine deacetylase; Provisional
Probab=98.88 E-value=2.9e-08 Score=113.24 Aligned_cols=139 Identities=20% Similarity=0.225 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002402 87 FEAIKHVKALTELGPHPVGSD-----ALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 161 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~-----~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~ 161 (927)
++..+.+++|.++. -..+.+ ++.++++ ||.+.|+++| ++++++... + ..
T Consensus 5 ~~~i~~l~~lv~i~-s~s~~e~~~~~~~~~~~~-~l~~~l~~~g------~~~~~~~~~---------~---------~~ 58 (383)
T PRK05111 5 PSFIEMYRALIATP-SISATDPALDQSNRAVID-LLAGWFEDLG------FNVEIQPVP---------G---------TR 58 (383)
T ss_pred hHHHHHHHHHhCcC-CcCCCCcccccchHHHHH-HHHHHHHHCC------CeEEEEecC---------C---------CC
Confidence 47888999998863 222221 1347889 9999999998 455543210 0 01
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHG 221 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~--------------------spGA~Dn~sGVA~mLElaR~L~~~~~~ 221 (927)
...|+++++ |. ..+.|++.+|+|+|+. +.|+.|+.+++|++|++++.|.+. .
T Consensus 59 ~~~nvia~~-g~-----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~ 130 (383)
T PRK05111 59 GKFNLLASL-GS-----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--K 130 (383)
T ss_pred CCceEEEEe-CC-----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--C
Confidence 236999998 43 1235999999999963 379999999999999999999864 4
Q ss_pred CCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEec
Q 002402 222 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 261 (927)
Q Consensus 222 p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD 261 (927)
++.+|+|+|..+||.|..|++.++++.... ...+|.-|
T Consensus 131 ~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~--~d~~i~~e 168 (383)
T PRK05111 131 LKKPLYILATADEETSMAGARAFAEATAIR--PDCAIIGE 168 (383)
T ss_pred CCCCeEEEEEeccccCcccHHHHHhcCCCC--CCEEEEcC
Confidence 568899999999999989999999654322 24455545
No 57
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.87 E-value=1.2e-07 Score=107.30 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=89.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCCC--------CCCc
Q 002402 198 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI--------GGKS 269 (927)
Q Consensus 198 A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G~--------gG~~ 269 (927)
|-||.+||+++++++|.+++.+.+++.+|.|+|+..||.| .|+.. ....++..+|.+|.... .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~-----~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASH-----ALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchh-----cccHhhhccEEEEecccCCCCCcCCCCce
Confidence 4899999999999999999876678899999999999999 56311 12223333466664321 1233
Q ss_pred ccee-cCC--CHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchHHhhhc-CCCeEEEEEeeCCCCCCCCCCCCcCCC
Q 002402 270 GLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLL 345 (927)
Q Consensus 270 ~lfq-~g~--~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~i 345 (927)
+... .++ |+.+.+...+.|+. .+-....+++.. .+||-..+... .|+|...++.- -.+-|| .+.+
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----~gtDa~~~~~~~~Gi~t~~i~iP--~Ry~Hs----~e~~ 323 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQD-HGIPHRRDVFRY----YRSDAASAVEAGHDIRTALVTFG--LDASHG----YERT 323 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH-cCCCcEEEecCC----CCChHHHHHHcCCCCCEEEeecc--ccchhh----hhhc
Confidence 2122 122 57777666665432 111111222221 36776665442 69999888642 233466 6677
Q ss_pred CHhHHHHHHHHHHHHH
Q 002402 346 KPGSLQHLGENMLAFL 361 (927)
Q Consensus 346 d~~slq~~g~~vl~lv 361 (927)
+.+.++++.+.+.+++
T Consensus 324 ~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 324 HIDALEALANLLVAYA 339 (343)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7777777777665544
No 58
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.87 E-value=3.8e-08 Score=112.69 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPHPVGS-DALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr~~GS-~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
.+++.+.|++|.+|.. ...+ .++.++++ ||.++|+++| ++++++.... +. . . .......
T Consensus 5 ~~~~~~~l~~lv~i~S-~s~~~~~~~~~a~-~l~~~l~~~G------~~~~~~~~~~--~~----~----~--~~~~~~~ 64 (394)
T PRK08651 5 MFDIVEFLKDLIKIPT-VNPPGENYEEIAE-FLRDTLEELG------FSTEIIEVPN--EY----V----K--KHDGPRP 64 (394)
T ss_pred HHHHHHHHHHHhcCCc-cCCCCcCHHHHHH-HHHHHHHHcC------CeEEEEecCc--cc----c----c--cccCCcc
Confidence 4788899999998732 1112 23447888 9999999998 4555442110 00 0 0 0001246
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccCC--------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFAA--------------------EGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~s--------------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
|++++. +. .++.|++.+|+|+++.. .|+.|+..|++++|++++.+.+.+ ++
T Consensus 65 ~~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~ 135 (394)
T PRK08651 65 NLIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DG 135 (394)
T ss_pred eEEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CC
Confidence 888865 32 23789999999999742 678999999999999999998753 78
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCC
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
+|.|+|..+||.|..|++.++++... +...++..|..|
T Consensus 136 ~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 136 NIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 99999999999988999999976543 245666666555
No 59
>PRK13004 peptidase; Reviewed
Probab=98.83 E-value=6e-08 Score=111.66 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeE-EEEEEeccCCcccccccccccccccccccce
Q 002402 87 FEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDV-EVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~v-evd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
+++.+.+++|.++ +.-|.++.++.+ ||.++|+++| +++ +++ ...|
T Consensus 15 ~~~~~~l~~lv~i---ps~s~~e~~~a~-~l~~~l~~~G------~~~~~~~------------------------~~~n 60 (399)
T PRK13004 15 ADMTRFLRDLIRI---PSESGDEKRVVK-RIKEEMEKVG------FDKVEID------------------------PMGN 60 (399)
T ss_pred HHHHHHHHHHhcC---CCCCCchHHHHH-HHHHHHHHcC------CcEEEEc------------------------CCCe
Confidence 5788888888875 333434457888 9999999998 332 111 1248
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
+++++.|. ++.|++.+|+|+|+. +.|+.||.+|++++|.+++.|.+.+..++.
T Consensus 61 ~~a~~~~~------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~ 134 (399)
T PRK13004 61 VLGYIGHG------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEY 134 (399)
T ss_pred EEEEECCC------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCC
Confidence 99988542 267999999999985 258999999999999999999987777889
Q ss_pred cEEEEEeCCCCC-CccchHHHHhcCCccCCceEEEEeccC
Q 002402 225 AVIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 225 ~IvFlf~~aEE~-Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
+|.|+|..+||. +-.|++.++++... +...++..|..
T Consensus 135 ~i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~~ 172 (399)
T PRK13004 135 TLYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEPT 172 (399)
T ss_pred eEEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccCC
Confidence 999999999996 34677777754222 23455555543
No 60
>PRK09961 exoaminopeptidase; Provisional
Probab=98.83 E-value=1.9e-07 Score=105.64 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=98.1
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCCCC----------
Q 002402 197 GAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIG---------- 266 (927)
Q Consensus 197 GA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G~g---------- 266 (927)
-|-||-+||++++|++|.+++. ++..+|.|+|+..||.|+.||+.-..+ ... ..+|.+|.+-.+
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i~p--d~~I~vDv~~~~d~~~~~~~~~ 236 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--VSP--DVAIVLDTACWAKNFDYGAANH 236 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--cCC--CEEEEEeccCCCCCCCCCCCcc
Confidence 3789999999999999999764 578999999999999999999988743 222 447777755322
Q ss_pred -----CCcccee-cC--CCHHHHHHHHHHhcCCCCcchhhhhhccCCC-CCCCchHHhhhc-CCCeEEEEEeeCCCCCCC
Q 002402 267 -----GKSGLFQ-AG--PHPWAVENFAAAAKYPSGQVTAQDLFASGAI-TSATDFQVYKEV-AGLSGLDFAYTDKSAVYH 336 (927)
Q Consensus 267 -----G~~~lfq-~g--~~~~li~~y~~~a~~p~~~~l~~e~f~~g~i-ps~TD~~~F~~~-~GIPgld~a~~~~~~~YH 336 (927)
|+.+-+. .+ +|+.+.+...+.++.-. -. +|.... ..+||-..|... .|+|++.+..- ..+=|
T Consensus 237 ~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~-Ip-----~Q~~~~~ggGTDa~~~~~~~~Giptv~ig~p--~ry~H 308 (344)
T PRK09961 237 RQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIG-IP-----LQADMFSNGGTDGGAVHLTGTGVPTVVMGPA--TRHGH 308 (344)
T ss_pred cccCCCceEEEccCCcCCCHHHHHHHHHHHHHcC-CC-----cEEEecCCCcchHHHHHHhCCCCCEEEechh--hhccc
Confidence 2222121 12 25667766666553211 10 121112 246898877542 68999998653 22348
Q ss_pred CCCCCcCCCCHhHHHHHHHHHHHHHHHH
Q 002402 337 TKNDKLDLLKPGSLQHLGENMLAFLLQA 364 (927)
Q Consensus 337 T~~Dt~d~id~~slq~~g~~vl~lv~~l 364 (927)
|+. |.++.+.+.++.+.+.+++..+
T Consensus 309 s~~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 309 CAA---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred Chh---heEEHHHHHHHHHHHHHHHHHc
Confidence 865 4556777777777777776554
No 61
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.82 E-value=2.9e-07 Score=104.23 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=99.0
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCCCC-----------
Q 002402 198 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIG----------- 266 (927)
Q Consensus 198 A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G~g----------- 266 (927)
|-||-.||++|+|++|.+++. +++.++.++|+..||.|+.||+.-+.+. .. ..+|.+|..-++
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i--~p--D~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKF--NP--DIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhC--CC--CEEEEEecCCcCCCCCCCccccC
Confidence 789999999999999999864 5788999999999999999999765332 22 367777754332
Q ss_pred -CCcccee-cCC--CHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchH--HhhhcCCCeEEEEEeeCCCCCCCCCCC
Q 002402 267 -GKSGLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ--VYKEVAGLSGLDFAYTDKSAVYHTKND 340 (927)
Q Consensus 267 -G~~~lfq-~g~--~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT~~D 340 (927)
|+.+.+. .++ |+.+.+...+.|+.- +-. .|.. ....+||-. .+.. .|+|.+.++-- ..+-||+.-
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~-~I~-~Q~~----~~~gGtDa~~~~~~~-~Gvpt~~i~ip--~Ry~Hs~~e 320 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEA-GIK-YQYY----VAKGGTDAGAAHLKN-SGVPSTTIGVC--ARYIHSHQT 320 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHc-CCC-cEEe----cCCCCchHHHHHHhC-CCCcEEEEccC--cccccChhh
Confidence 3333222 233 677777766655321 100 1111 112356666 5655 79999988742 334588764
Q ss_pred CcCCCCHhHHHHHHHHHHHHHHHH
Q 002402 341 KLDLLKPGSLQHLGENMLAFLLQA 364 (927)
Q Consensus 341 t~d~id~~slq~~g~~vl~lv~~l 364 (927)
.++.+.+.+..+.+.+++..+
T Consensus 321 ---~i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 321 ---LYSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred ---eeeHHHHHHHHHHHHHHHHhc
Confidence 456777888888888887765
No 62
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.81 E-value=6.2e-08 Score=111.78 Aligned_cols=144 Identities=21% Similarity=0.240 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002402 87 FEAIKHVKALTELGPHPVGS-DALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS-~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
+++.+.|+.|.++ ++-| .+..++++ |+.++|+++| ..++.+..... ....|
T Consensus 13 ~~~~~~l~~lv~~---~s~s~~~~~~~~~-~l~~~l~~~g------~~~~~~~~~~~------------------~~~~n 64 (409)
T COG0624 13 DDILELLKELVRI---PSVSAGEEAEAAE-LLAEWLEELG------FEVEEDEVGPG------------------PGRPN 64 (409)
T ss_pred HHHHHHHHHHhcC---CCCCcccchHHHH-HHHHHHHHcC------CceEEeecCCC------------------CCceE
Confidence 3455677777764 4445 55668899 9999999988 45555432110 03469
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~s---------------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
+++++.+. .+++.|++++|+|+||.+ .|+.|+..++++++.+++.+.+.+..++.
T Consensus 65 ~~~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~ 140 (409)
T COG0624 65 LVARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPG 140 (409)
T ss_pred EEEEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCe
Confidence 99999875 233899999999999863 69999999999999999999997778889
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCCc--cCCceEEEEecc
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEA 262 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~~--~~~i~a~INLD~ 262 (927)
+|.+++...||.|-.|...++.++.. ..+..+.|..|.
T Consensus 141 ~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 141 DVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 99999999999999999999876642 346677888886
No 63
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.80 E-value=4.7e-08 Score=115.00 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCCCCC---------CCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccc
Q 002402 87 FEAIKHVKALTELGPHPV---------GSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 157 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~---------GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 157 (927)
+++.+.|++|.++..-.. ...+.+++.+ |+++.++++| ++++..
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~G------~~~~~~-------------------- 65 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALT-KFLSFAERDG------FTTKNF-------------------- 65 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHH-HHHHHHHHCC------CeEEEe--------------------
Confidence 466778888877532110 1234457888 9999999998 454431
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002402 158 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 218 (927)
Q Consensus 158 ~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-------------------spGA~Dn~sGVA~mLElaR~L~~~ 218 (927)
.|+++++.+. .+++.|++.+|+|+||. +.|+.||..|++++|.+++.|++.
T Consensus 66 ------~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~ 135 (466)
T TIGR01886 66 ------DNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKEL 135 (466)
T ss_pred ------cCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHh
Confidence 1222223221 24568999999999975 489999999999999999999988
Q ss_pred CCCCCCcEEEEEeCCCCCCccchHHHHhcCC
Q 002402 219 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 249 (927)
Q Consensus 219 ~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~ 249 (927)
+.+++++|+|++..+||.|..|++.++++++
T Consensus 136 ~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 136 GLPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 8788999999999999999999999997664
No 64
>PRK08554 peptidase; Reviewed
Probab=98.80 E-value=8.4e-08 Score=112.06 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 88 EAIKHVKALTELGPHPVG---SDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 88 rA~~~L~~L~~igpr~~G---S~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
++.+.|++|.++.....+ ..+..++++ |+.+.++++| ++++... . ....
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~-~l~~~l~~~G------~~~~~~~--~-------------------~~~~ 53 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPK-FIKDTLESWG------IESELIE--K-------------------DGYY 53 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHH-HHHHHHHHCC------CeEEEEe--c-------------------CCce
Confidence 456788888876332111 223457899 9999999988 4444321 0 0225
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~--------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
|+++++ |. .++.|++.+|+|+|+. ++|+.|+.+|+|++|.+++.|.+. .+++
T Consensus 54 ~l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~ 125 (438)
T PRK08554 54 AVYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNG 125 (438)
T ss_pred EEEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCC
Confidence 888887 32 2357999999999974 389999999999999999999864 3678
Q ss_pred cEEEEEeCCCCCCccchHHHHhcCC-ccCCceEEEEeccCC
Q 002402 225 AVIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAIDLEAMG 264 (927)
Q Consensus 225 ~IvFlf~~aEE~Gl~GS~~fv~~h~-~~~~i~a~INLD~~G 264 (927)
+|.|+|+.+||.|..++..++++.. ......++|+.|..+
T Consensus 126 ~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 126 KVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred CEEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 8999999999998777777665432 224567899999865
No 65
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.80 E-value=4.6e-08 Score=109.90 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=93.8
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002402 92 HVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 171 (927)
Q Consensus 92 ~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i~ 171 (927)
.+++|.++ |-+.| .++++++ ||.++|+++| ++++.+ ...|+++..
T Consensus 2 ~l~~lv~i-~s~s~--~e~~~~~-~l~~~l~~~g------~~~~~~------------------------~~~~~~~~~- 46 (336)
T TIGR01902 2 LLKDLLEI-YSPSG--KEANAAK-FLEEISKDLG------LKLIID------------------------DAGNFILGK- 46 (336)
T ss_pred hHHHHhcC-CCCCc--chHHHHH-HHHHHHHHcC------CEEEEC------------------------CCCcEEEEe-
Confidence 36677775 33333 3457889 9999999998 444221 124777765
Q ss_pred CCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCcc
Q 002402 172 PKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN 239 (927)
Q Consensus 172 G~~~~~~~~~~VLl~AHyDSv~~------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~ 239 (927)
+. +++.|++++|+|+|+. +.|+.|+.+|+|+||++++.|.+. ..+|.|+++.+||.|..
T Consensus 47 ~~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~ 117 (336)
T TIGR01902 47 GD-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSK 117 (336)
T ss_pred CC-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCc
Confidence 22 3478999999999963 479999999999999999999763 35899999999999999
Q ss_pred chHHHHhcCCccCCceEEEEeccCC
Q 002402 240 GAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 240 GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
|++.+++++. . .++|..|..+
T Consensus 118 G~~~~~~~~~--~--~~~ii~ept~ 138 (336)
T TIGR01902 118 GAREVIDKNY--P--FYVIVGEPSG 138 (336)
T ss_pred cHHHHHhhcC--C--CEEEEecCCC
Confidence 9999997653 1 2667777655
No 66
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.78 E-value=8.2e-08 Score=109.08 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=97.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEE
Q 002402 91 KHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRI 170 (927)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i 170 (927)
+.+++|.++ |.+.| .+.++++ ||.++|+++| ++++.+ . ....|+++++
T Consensus 3 ~~~~~L~~i-ps~s~--~E~~~a~-~l~~~l~~~g------~~~~~~--~--------------------~~~~~vva~~ 50 (363)
T TIGR01891 3 DIRRHLHEH-PELSF--EEFKTSS-LIAEALESLG------IEVRRG--V--------------------GGATGVVATI 50 (363)
T ss_pred HHHHHHhcC-CCCCC--chHHHHH-HHHHHHHHcC------CceEec--C--------------------CCCcEEEEEE
Confidence 567788885 56655 3457889 9999999998 444331 0 0236999998
Q ss_pred cCCCCCcCCCCEEEEEeecccccCC-----------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q 002402 171 QPKYASEAAENAILVSSHIDTVFAA-----------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 233 (927)
Q Consensus 171 ~G~~~~~~~~~~VLl~AHyDSv~~s-----------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~a 233 (927)
.++ .+++.|++++|+|+|+.+ .|+ .+++|++|.+++.|++.+.+++++|.|+|+.+
T Consensus 51 ~~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~d 123 (363)
T TIGR01891 51 GGG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPA 123 (363)
T ss_pred eCC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeec
Confidence 763 234789999999999731 233 26789999999999876566788999999999
Q ss_pred CCCCccchHHHHhcCCccCCceEEEEeccC
Q 002402 234 EEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 263 (927)
Q Consensus 234 EE~Gl~GS~~fv~~h~~~~~i~a~INLD~~ 263 (927)
||.+ .|++.+++++ +.+++.++|+.|..
T Consensus 124 EE~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 124 EEGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred CcCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 9986 7999998654 34566788888764
No 67
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.77 E-value=8.2e-08 Score=107.82 Aligned_cols=130 Identities=21% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002402 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 162 (927)
Q Consensus 83 ~fs~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~ 162 (927)
.-+.+|.++.|+.-+- .|.+-++. .+++ |+.++.+.++... ..++.. + .
T Consensus 25 ~~~v~~f~eylRi~Tv-~p~~dy~~---a~~~-Fl~~~a~~l~l~~---~~i~~~----------------------p-~ 73 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTV-QPNPDYTI---ACAD-FLKKYAKSLGLTV---QKIESE----------------------P-G 73 (420)
T ss_pred chHHHHHHHHhhcccc-ccCCCccH---HHHH-HHHHHHHhcCCce---eEEEec----------------------C-c
Confidence 4567777777776664 45554443 5678 9999999988321 111111 1 2
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002402 163 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 221 (927)
Q Consensus 163 ~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~ 221 (927)
..+++.+++|+ +...+.||+++|.|+||. +.||.|+.+-++++||++|.|...+.+
T Consensus 74 ~~~~l~T~~GS---~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGS---DPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFK 150 (420)
T ss_pred eeEEEEEeeCC---CCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCC
Confidence 46889999997 345688999999999985 379999999999999999999999999
Q ss_pred CCCcEEEEEeCCCCCC-ccchHHHHh
Q 002402 222 FKNAVIFLFNTGEEEG-LNGAHSFVT 246 (927)
Q Consensus 222 p~~~IvFlf~~aEE~G-l~GS~~fv~ 246 (927)
|+|+|.+.|-.+||.| -.|++.|+.
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh
Confidence 9999999999999987 899999995
No 68
>PRK06156 hypothetical protein; Provisional
Probab=98.77 E-value=1.8e-07 Score=111.58 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCC-CCCC-----CHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGP-HPVG-----SDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 159 (927)
Q Consensus 86 ~~rA~~~L~~L~~igp-r~~G-----S~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 159 (927)
.+++.+.|++|.+|.. .+.| .++.....+ ||.+++++.| ++++.
T Consensus 45 ~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~-~l~~~l~~~G------~~~~~----------------------- 94 (520)
T PRK06156 45 GAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKK-LLKSLARDFG------LDYRN----------------------- 94 (520)
T ss_pred HHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHH-HHHHHHHHCC------CeEEe-----------------------
Confidence 4677788888887632 1111 112235568 9999999988 33321
Q ss_pred ccccceEE-EEEcCCCCCcCCCCEEEEEeecccccC-------------------------CCCCCCChhHHHHHHHHHH
Q 002402 160 YSDLNHIV-LRIQPKYASEAAENAILVSSHIDTVFA-------------------------AEGAGDCSSCVAVMLELAR 213 (927)
Q Consensus 160 y~~~~NVI-a~i~G~~~~~~~~~~VLl~AHyDSv~~-------------------------spGA~Dn~sGVA~mLElaR 213 (927)
...||+ ++++|+ ..+.|++.+|+|+||. +.|+.|+..|++++|.+++
T Consensus 95 --~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~ 167 (520)
T PRK06156 95 --VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMK 167 (520)
T ss_pred --cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHH
Confidence 012444 677653 3367999999999973 2689999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEecc
Q 002402 214 AMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 214 ~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
.|.+.+.+++++|.|+|+.+||.|..|++.++.++. ....++|+|+
T Consensus 168 ~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 168 AIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 998877777889999999999999999999996553 2356777775
No 69
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.76 E-value=8.6e-08 Score=108.97 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEE
Q 002402 91 KHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRI 170 (927)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i 170 (927)
+.|++|.++ +.-|..+.++++ ||.++|+++| +++++.. . .+..|++++.
T Consensus 3 ~~l~~lv~i---ps~s~~e~~~~~-~i~~~l~~~G------~~~~~~~--~-------------------~~~~~~~~~~ 51 (370)
T TIGR01246 3 ELAKELISR---PSVTPNDAGCQD-IIAERLEKLG------FEIEWMH--F-------------------GDTKNLWATR 51 (370)
T ss_pred HHHHHHhcC---CCCCcchHHHHH-HHHHHHHHCC------CEEEEEe--c-------------------CCCceEEEEe
Confidence 567777764 344555567889 9999999998 4554431 0 0235899975
Q ss_pred cCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 002402 171 QPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFL 229 (927)
Q Consensus 171 ~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFl 229 (927)
|. ..+.|++.+|+|+||. +.|+.|+..|+++|+++++.+.+.+.+++.+|+|+
T Consensus 52 -g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~ 125 (370)
T TIGR01246 52 -GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLL 125 (370)
T ss_pred -cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 32 3468999999999975 26888999999999999999988766778899999
Q ss_pred EeCCCCCC-ccchHHHHhcCCc-cCCceEEEEecc
Q 002402 230 FNTGEEEG-LNGAHSFVTQHPW-STTIRVAIDLEA 262 (927)
Q Consensus 230 f~~aEE~G-l~GS~~fv~~h~~-~~~i~a~INLD~ 262 (927)
|..+||.+ ..|++.+++.... ......+|..|.
T Consensus 126 ~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 126 ITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred EEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 99999986 4699988753211 123455665553
No 70
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.76 E-value=9.1e-08 Score=109.37 Aligned_cols=135 Identities=24% Similarity=0.237 Sum_probs=96.5
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcC
Q 002402 93 VKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 172 (927)
Q Consensus 93 L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i~G 172 (927)
|++|.++ | .-|.+++++.+ ||.++|++++.. .++++.+ ..||++++.+
T Consensus 2 l~~Lv~i-p--S~s~~e~~~~~-~i~~~l~~~g~~-----~~~~~~~-----------------------~~nvva~~~~ 49 (373)
T TIGR01900 2 LQQIMDI-F--SPSDHEGPIAD-EIEAALNNLELE-----GLEVFRF-----------------------GDNVLARTDF 49 (373)
T ss_pred hHHHhCC-C--CCCchHHHHHH-HHHHHHhhcccc-----CceEEEE-----------------------CCEEEEecCC
Confidence 5667765 2 23334457888 999999988621 1223210 1399998743
Q ss_pred CCCCcCCCCEEEEEeecccccC-------------------------------CCCCCCChhHHHHHHHHHHHHHh--cC
Q 002402 173 KYASEAAENAILVSSHIDTVFA-------------------------------AEGAGDCSSCVAVMLELARAMSQ--WA 219 (927)
Q Consensus 173 ~~~~~~~~~~VLl~AHyDSv~~-------------------------------spGA~Dn~sGVA~mLElaR~L~~--~~ 219 (927)
. +.+.|++++|+|+|+. +.|+.|+.+|+|+||.+++.|.+ .+
T Consensus 50 ~-----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~ 124 (373)
T TIGR01900 50 G-----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPE 124 (373)
T ss_pred C-----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccc
Confidence 2 3467999999999952 26899999999999999999954 24
Q ss_pred CCCCCcEEEEEeCCCCCC--ccchHHHHhcCCccCCceEEEEeccCC
Q 002402 220 HGFKNAVIFLFNTGEEEG--LNGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 220 ~~p~~~IvFlf~~aEE~G--l~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
..++.+|.|+|..+||.+ ..|+..++++++...+..++|..|..+
T Consensus 125 ~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~ 171 (373)
T TIGR01900 125 TELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPTG 171 (373)
T ss_pred cCCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCCC
Confidence 467889999999999986 369999987765333456777777544
No 71
>PRK09864 putative peptidase; Provisional
Probab=98.74 E-value=5.3e-07 Score=102.11 Aligned_cols=148 Identities=20% Similarity=0.174 Sum_probs=96.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccCCC------------
Q 002402 198 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI------------ 265 (927)
Q Consensus 198 A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~G~------------ 265 (927)
|-||-.||++|+|++|.+++ ++.++.|+|+.-||.|+.||+.-+.+.+ .+ .+|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~--PD--iaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK--PD--VVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC--CC--EEEEEecccCCCCCCCcccccc
Confidence 78999999999999999964 7799999999999999999998764332 23 3666664421
Q ss_pred ----CCCcc-ceecCC--CHHHHHHHHHHhcCCCCcchhhhhhccCCCC-CCCchHHhhhc-CCCeEEEEEeeCCCCCCC
Q 002402 266 ----GGKSG-LFQAGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYH 336 (927)
Q Consensus 266 ----gG~~~-lfq~g~--~~~li~~y~~~a~~p~~~~l~~e~f~~g~ip-s~TD~~~F~~~-~GIPgld~a~~~~~~~YH 336 (927)
+|+.+ .+..++ |+.+.+...+.|+. .+-. +|....+ .+||-..+... .|+|...++.- -.+-|
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip-----~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP--~RY~H 316 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH-NDLP-----LQFSTMKTGATDGGRYNVMGGGRPVVALCLP--TRYLH 316 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHH-cCCC-----ceEEEcCCCCchHHHHHHhCCCCcEEEEeec--cCcCC
Confidence 12332 222233 57777776665532 1110 1211222 36777766442 69999988752 33558
Q ss_pred CCCCCcCCCCHhHHHHHHHHHHHHHHHH
Q 002402 337 TKNDKLDLLKPGSLQHLGENMLAFLLQA 364 (927)
Q Consensus 337 T~~Dt~d~id~~slq~~g~~vl~lv~~l 364 (927)
|+.-. ++.+.++++.+.+.+++..+
T Consensus 317 s~~e~---~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 317 ANSGM---ISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CcceE---eEHHHHHHHHHHHHHHHHhc
Confidence 88655 45666667777777766654
No 72
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.63 E-value=4.1e-07 Score=104.54 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcee-EEEEEEeccCCcccccccccccccccccccce
Q 002402 87 FEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
+++.+.+++|.++ |-+.| .++++.+ ||.++|+++| ++ ++++ ...|
T Consensus 13 ~~~~~~~~~lv~i-~s~s~--~e~~~~~-~l~~~l~~~G------~~~~~~~------------------------~~~n 58 (395)
T TIGR03320 13 GDMIRFLRDLVAI-PSESG--DEKRVAE-RIKEEMEKLG------FDKVEID------------------------PMGN 58 (395)
T ss_pred HHHHHHHHHHHcC-CCCCC--chHHHHH-HHHHHHHHhC------CcEEEEC------------------------CCCC
Confidence 6778888888885 32333 3457889 9999999998 33 2221 1248
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
+++++ |. +++.|++.+|+|+|+. +.|+.|+..|+|+||.+++.|.+.+..++.
T Consensus 59 ~~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~ 132 (395)
T TIGR03320 59 VLGYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDY 132 (395)
T ss_pred EEEEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCc
Confidence 89887 42 2367999999999874 389999999999999999999987666778
Q ss_pred cEEEEEeCCCCCC-ccchHHHHhcCCccCCceEEEEecc
Q 002402 225 AVIFLFNTGEEEG-LNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 225 ~IvFlf~~aEE~G-l~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
+|+|++..+||.+ -.|++.++.+... ...++|..|.
T Consensus 133 ~i~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~iv~ep 169 (395)
T TIGR03320 133 TLLVTGTVQEEDCDGLCWQYIIEEDGI--KPEFVVITEP 169 (395)
T ss_pred eEEEEecccccccCchHHHHHHHhcCC--CCCEEEEcCC
Confidence 9999999999964 2334555543222 2344555553
No 73
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.63 E-value=3.5e-07 Score=107.17 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCCC-----C-----CHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccc
Q 002402 87 FEAIKHVKALTELGPHPV-----G-----SDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 156 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~-----G-----S~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 156 (927)
+.+.+.|++|.++.. +. + .++..++.+ ||.++++++| ++++.
T Consensus 2 ~~~i~ll~~Lv~ipS-~s~~~~p~~~~~~~~~~~~~~~-~l~~~~~~~g------~~~~~-------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDS-VEDLEEAKEGAPFGEGPKKALD-KFLELAKRDG------FTTEN-------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCc-CCCCCCCCCCCCcchhHHHHHH-HHHHHHHHcC------ceEEE--------------------
Confidence 356777888877522 11 1 223457889 9999999988 34431
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHh
Q 002402 157 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQ 217 (927)
Q Consensus 157 ~~~y~~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-------------------spGA~Dn~sGVA~mLElaR~L~~ 217 (927)
..|++++.... ...+.|++++|+|+|+. +.|+.|+..|+++++++++.|.+
T Consensus 54 ------~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~ 123 (447)
T TIGR01887 54 ------VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKE 123 (447)
T ss_pred ------ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH
Confidence 11333332211 12357999999999974 37999999999999999999998
Q ss_pred cCCCCCCcEEEEEeCCCCCCccchHHHHhc
Q 002402 218 WAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 247 (927)
Q Consensus 218 ~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~ 247 (927)
.+.+++++|.|+|+.+||.|..|+..++.+
T Consensus 124 ~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 124 LGLKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred cCCCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 777788999999999999999999999864
No 74
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.62 E-value=6.5e-07 Score=102.96 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeE-EEEEEeccCCcccccccccccccccccccce
Q 002402 87 FEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDV-EVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 165 (927)
Q Consensus 87 ~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~v-evd~f~~~~g~~~~~g~~~~~~~~~y~~~~N 165 (927)
+++.+.+++|.++ |-+ |..+.++.+ ||.++++++| +++ +.+ ...|
T Consensus 13 ~~~~~~l~~Lv~i-ps~--s~~e~~~~~-~l~~~l~~~g------~~~~~~~------------------------~~~~ 58 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSE--SGDEGRVAL-RIKQEMEKLG------FDKVEID------------------------PMGN 58 (395)
T ss_pred HHHHHHHHHHhcC-CCC--CCchHHHHH-HHHHHHHHcC------CceEEEc------------------------CCCc
Confidence 5677888888875 333 333447888 9999999988 332 221 1248
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 002402 166 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 224 (927)
Q Consensus 166 VIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~ 224 (927)
+++.+ |. .++.|++.+|+|+|+. +.|+.|+..|+|++|.+++.|.+.+..++.
T Consensus 59 v~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~ 132 (395)
T TIGR03526 59 VLGYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDY 132 (395)
T ss_pred EEEEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCc
Confidence 89988 42 2357999999999974 389999999999999999999987666778
Q ss_pred cEEEEEeCCCCC-CccchHHHHhcCCccCCceEEEEecc
Q 002402 225 AVIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAIDLEA 262 (927)
Q Consensus 225 ~IvFlf~~aEE~-Gl~GS~~fv~~h~~~~~i~a~INLD~ 262 (927)
++.|++..+||. +-.|++.++.+... +..++|..|.
T Consensus 133 ~v~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~i~~ep 169 (395)
T TIGR03526 133 TLLVTGTVQEEDCDGLCWQYIIEEDKI--KPEFVVITEP 169 (395)
T ss_pred eEEEEEecccccCCcHhHHHHHhccCC--CCCEEEecCC
Confidence 999999999993 33466676644322 2344554553
No 75
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.50 E-value=1.2e-06 Score=99.89 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002402 86 EFEAIKHVKALTELGPH-PVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 164 (927)
Q Consensus 86 ~~rA~~~L~~L~~igpr-~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~ 164 (927)
.+++.+.|++|.+|... +.++.++.++.+ ||.++++ | ++++++. . + ....
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~-~l~~~l~--g------~~~~~~~--~--------~----------~~~~ 55 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFD-YLRAQLP--G------FQVEVID--H--------G----------AGAV 55 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHH-HHHHHhC--C------CEEEEec--C--------C----------CCce
Confidence 45788999999987432 222222357888 9999986 4 4555441 1 0 1345
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 002402 165 HIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 225 (927)
Q Consensus 165 NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~-------------------spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~ 225 (927)
|++++. |+ +.|++++|+|+||. +.|+.|+.+|+|+||.+++. ++.+
T Consensus 56 nli~~~-g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~ 120 (364)
T PRK08737 56 SLYAVR-GT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGD 120 (364)
T ss_pred EEEEEc-CC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCC
Confidence 888853 31 36999999999974 25999999999999999873 3468
Q ss_pred EEEEEeCCCCCCc-cchHHHHhcCCccCCceEEEEeccCC
Q 002402 226 VIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLEAMG 264 (927)
Q Consensus 226 IvFlf~~aEE~Gl-~GS~~fv~~h~~~~~i~a~INLD~~G 264 (927)
|.|+|+.+||.|. .|++.++++.. +..++|..|..+
T Consensus 121 v~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ept~ 157 (364)
T PRK08737 121 AAFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAEPTM 157 (364)
T ss_pred EEEEEEcccccCchhhHHHHHHhCC---CCCEEEEcCCCC
Confidence 9999999999987 68899986542 234556555443
No 76
>PLN02693 IAA-amino acid hydrolase
Probab=98.46 E-value=2.7e-06 Score=99.47 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002402 88 EAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 167 (927)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVI 167 (927)
++.+..++|-+ +|--|-.+.++.+ ||.++|+++| ++++.. ....|++
T Consensus 48 ~~~~~r~~lh~---~PE~s~~E~~ta~-~i~~~L~~~G------~~~~~~-----------------------~~~~~vi 94 (437)
T PLN02693 48 WMVRIRRKIHE---NPELGYEEFETSK-LIRSELDLIG------IKYRYP-----------------------VAITGII 94 (437)
T ss_pred HHHHHHHHHHh---CCCCCCchHHHHH-HHHHHHHHCC------CeeEec-----------------------CCCcEEE
Confidence 34444555554 4445555568899 9999999998 444321 0236999
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccCC-----------CC---CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q 002402 168 LRIQPKYASEAAENAILVSSHIDTVFAA-----------EG---AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 233 (927)
Q Consensus 168 a~i~G~~~~~~~~~~VLl~AHyDSv~~s-----------pG---A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~a 233 (927)
+++.+ .+++.|++.+|+|++|.. +| +.|..+++|+||.+++.|++.+.+++.+|+|+|..+
T Consensus 95 a~~g~-----~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pd 169 (437)
T PLN02693 95 GYIGT-----GEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPA 169 (437)
T ss_pred EEECC-----CCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEc
Confidence 99832 235789999999999842 12 667777999999999999986556678999999999
Q ss_pred CCCCccchHHHHhcC
Q 002402 234 EEEGLNGAHSFVTQH 248 (927)
Q Consensus 234 EE~Gl~GS~~fv~~h 248 (927)
|| +..|++.++++.
T Consensus 170 EE-~~~Ga~~~i~~g 183 (437)
T PLN02693 170 EE-GLSGAKKMREEG 183 (437)
T ss_pred cc-chhhHHHHHHCC
Confidence 99 557999998653
No 77
>PLN02280 IAA-amino acid hydrolase
Probab=98.45 E-value=3.2e-06 Score=99.86 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCC
Q 002402 102 HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAEN 181 (927)
Q Consensus 102 r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i~G~~~~~~~~~ 181 (927)
+|--+.++.++.+ ||.++|+++| ++++.. ....|+++++ |+ .+++
T Consensus 109 ~PEls~~E~~t~~-~i~~~L~~~G------~~~~~~-----------------------~~~~~vva~~-g~----~~~~ 153 (478)
T PLN02280 109 NPELAFEEYKTSE-LVRSELDRMG------IMYRYP-----------------------LAKTGIRAWI-GT----GGPP 153 (478)
T ss_pred CCCCCCcHHHHHH-HHHHHHHHCC------CeEEec-----------------------CCCCEEEEEE-CC----CCCC
Confidence 3433445568899 9999999998 454431 0235999998 53 1337
Q ss_pred EEEEEeecccccCC---------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHh
Q 002402 182 AILVSSHIDTVFAA---------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 246 (927)
Q Consensus 182 ~VLl~AHyDSv~~s---------------pGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~ 246 (927)
.|++.+|+|++|.. .|.+.|+ ++|++|.+++.|++.+.+++.+|+|+|..+||.| .|++.+++
T Consensus 154 ~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g-~Ga~~li~ 231 (478)
T PLN02280 154 FVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG-NGAKRMIG 231 (478)
T ss_pred EEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhccccCCceEEEEeccccccc-chHHHHHH
Confidence 89999999999852 2333344 9999999999998766667889999999999997 49999985
Q ss_pred cCCccCCceEEE
Q 002402 247 QHPWSTTIRVAI 258 (927)
Q Consensus 247 ~h~~~~~i~a~I 258 (927)
+ ...+++.+++
T Consensus 232 ~-g~~~~~d~~~ 242 (478)
T PLN02280 232 D-GALDDVEAIF 242 (478)
T ss_pred C-CCCcCCCEEE
Confidence 4 3333334444
No 78
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.34 E-value=3.2e-06 Score=91.37 Aligned_cols=171 Identities=18% Similarity=0.240 Sum_probs=129.4
Q ss_pred CCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCc-cCCceEE
Q 002402 179 AENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 257 (927)
Q Consensus 179 ~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~-~~~i~a~ 257 (927)
.++.|++++|.-|.. =|+||.||+|.+.-+++.|+.. +.+.+-+|+|-. +-.||-.|..+|.. .++++.-
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 566799999999874 7999999999999999999875 468899999987 35799999999875 4799999
Q ss_pred EEeccCCCCCCccceecCCCHHHHHHHHHH-hcCCCCcchhhhhhccCCCCCCCchHHhhhcCCCeEEEEE-------ee
Q 002402 258 IDLEAMGIGGKSGLFQAGPHPWAVENFAAA-AKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFA-------YT 329 (927)
Q Consensus 258 INLD~~G~gG~~~lfq~g~~~~li~~y~~~-a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a-------~~ 329 (927)
+.+-+.|-+|.....++.-...+++..+.. -+|-... ..+ ..++|.++|-+.|.. ||+++- -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~s~---~~~--~dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCGSN---FKA--ADFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCCcC---cee--eecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 999999988776666644434455544432 2232211 111 236888999999975 555442 12
Q ss_pred CCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 002402 330 DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 367 (927)
Q Consensus 330 ~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~la~s 367 (927)
+..+-|||..|+.+.++++.|..--+.+++++..+-+.
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~N 356 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEIN 356 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44567999999999999999998888888888887764
No 79
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.30 E-value=3.1e-06 Score=95.29 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhcc-ccCCceeEEEEEEeccCCccccccccccccccccc
Q 002402 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQVYVFAAAQKIKE-TKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 161 (927)
Q Consensus 83 ~fs~~rA~~~L~~L~~igpr~~GS~~n~~a~~~yL~~~l~~ig~-~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~ 161 (927)
..|.||+++...+|++ -|-..||+++..-.+ +|..-|.++-. +.+. .|.+.... . +..|
T Consensus 4 ~is~e~v~~lt~~LV~-~~SvtgT~GE~a~ad-~l~~vL~~~pYFqehp-----ed~~~~pi-----~-------nDpy- 63 (553)
T COG4187 4 RISSERVRALTLSLVS-WPSVTGTPGEGAFAD-RLLGVLGELPYFQEHP-----EDLWLQPI-----H-------NDPY- 63 (553)
T ss_pred hhhHHHHHHHHHHHee-ccccCCCcccccHHH-HHHHHHhcCchhhhCh-----HhhcccCC-----C-------CCcc-
Confidence 3568999999999998 477899999887788 99998888752 1111 11111110 0 1112
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC------------------------------------------CCCCC
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------------AEGAG 199 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~------------------------------------------spGA~ 199 (927)
.-.||.|-++|+ ++++.|++.+|||+|.. +.|+.
T Consensus 64 gR~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~ 139 (553)
T COG4187 64 GRRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGAL 139 (553)
T ss_pred ccceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCch
Confidence 457999999985 57789999999999964 37999
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCc-----cCCceEEEEeccCCC
Q 002402 200 DCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAIDLEAMGI 265 (927)
Q Consensus 200 Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~-----~~~i~a~INLD~~G~ 265 (927)
|..||.|+-|..+..+++. ...+.+|.|+.+..||..-.|.+.-+...+- .-...++||+|.++.
T Consensus 140 DMKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 140 DMKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 9999999999999999986 5678899999999999987787766544331 136789999999875
No 80
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.86 E-value=4.4e-05 Score=84.72 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=84.6
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEeccC------CCC-----
Q 002402 198 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM------GIG----- 266 (927)
Q Consensus 198 A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD~~------G~g----- 266 (927)
|-||-+||++++|++|.+++. ..+.+|.|+|+..||.|+.|++..+.+. +...+|.+|.. +..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 678999999999999999874 4569999999999999999999887542 22345555543 221
Q ss_pred ---CCccc-eecCC--CHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchHHhhhc-CCCeEEEEEeeCCCCCCCCCC
Q 002402 267 ---GKSGL-FQAGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKN 339 (927)
Q Consensus 267 ---G~~~l-fq~g~--~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~ 339 (927)
|+.+. ...++ ++.+.+...+.|+.- +-..-.+.+ ...+||-..+... .|+|+..++.- -.+.||+.
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~-~Ip~Q~~~~----~~ggTDa~~~~~~~~Gi~t~~i~iP--~ry~Hs~~ 278 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEEN-GIPYQREVF----SGGGTDAGAIQLSGGGIPTAVISIP--CRYMHSPV 278 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHHT-T--EEEEEE----SSSSSTHHHHHTSTTSSEEEEEEEE--EBSTTSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHHc-CCCeEEEec----CCcccHHHHHHHcCCCCCEEEEecc--cccCCCcc
Confidence 22221 21112 466666666554321 111111222 2357898888652 59999988753 45679987
Q ss_pred CCcC
Q 002402 340 DKLD 343 (927)
Q Consensus 340 Dt~d 343 (927)
-+.+
T Consensus 279 e~~~ 282 (292)
T PF05343_consen 279 EVID 282 (292)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
No 81
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00024 Score=81.82 Aligned_cols=187 Identities=13% Similarity=0.175 Sum_probs=126.3
Q ss_pred ccceEEEEEcCCCCC---cCCCCEEEEEeeccccc----CCCCCCCChhHHHHHHHHHHHHHhcC--CCCCCcEEEEEeC
Q 002402 162 DLNHIVLRIQPKYAS---EAAENAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQWA--HGFKNAVIFLFNT 232 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~---~~~~~~VLl~AHyDSv~----~spGA~Dn~sGVA~mLElaR~L~~~~--~~p~~~IvFlf~~ 232 (927)
...||..-+++.... +.-.++++..+-+||.. .++||..--++....|..||.|++.. ...+++|.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 556887776653221 12268999999999963 47899989999999999999998742 4678999999999
Q ss_pred CCCCCccchHHHHhcC---C--cc-CC---ceEEEEeccCCCC-CCcc-ceecCC-C----HH---HHHHHHHHh-cCCC
Q 002402 233 GEEEGLNGAHSFVTQH---P--WS-TT---IRVAIDLEAMGIG-GKSG-LFQAGP-H----PW---AVENFAAAA-KYPS 292 (927)
Q Consensus 233 aEE~Gl~GS~~fv~~h---~--~~-~~---i~a~INLD~~G~g-G~~~-lfq~g~-~----~~---li~~y~~~a-~~p~ 292 (927)
||-.+.+||..++-+. + .+ ++ +..++.+-.+|-+ ++.+ ++..+- . .. .++.++|.. .+++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 9999999999887544 2 22 33 7888888887753 2222 333211 1 11 233344331 2333
Q ss_pred CcchhhhhhccCCCCCCCchHHhhhcCCCeEEEEEeeC---CCCCCCCCCCCcCCCCHhHH
Q 002402 293 GQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD---KSAVYHTKNDKLDLLKPGSL 350 (927)
Q Consensus 293 ~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~id~~sl 350 (927)
.- +.++- +..-+|..+=++..|+..++.++-++-.+ ...+||+.+|+.|+++...-
T Consensus 316 ~l-l~~s~-~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 316 DL-LKPSG-SSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred ee-ecCCC-CCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 21 11221 12346766767777756899999998665 34689999999999998755
No 82
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0031 Score=71.31 Aligned_cols=142 Identities=21% Similarity=0.313 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002402 85 SEFEAIKHVKALTELGP---HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 161 (927)
Q Consensus 85 s~~rA~~~L~~L~~igp---r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~ 161 (927)
..++..+.|++..+|.. -|.-...-.+.++ |+.++++++|. .++.- +- |.+...+ + .+.
T Consensus 14 ~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~-~~~~~l~~lG~------~~~l~--dl--g~q~~~~----g---~~v 75 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQSVSADPTKRLEVRRMAD-WLRDYLTKLGA------PLELV--DL--GYQSLPD----G---QIV 75 (473)
T ss_pred cHHHHHHHHHHHhcccccccCccccHHHHHHHH-HHHHHHHHhCC------ceeee--ec--ccCCCCC----C---ccc
Confidence 45677788888877643 1222222347899 99999999992 22211 10 0000001 0 011
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhcCC
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 220 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~---------------------spGA~Dn~sGVA~mLElaR~L~~~~~ 220 (927)
...-++--.-|+ ..+++.+++-.|||-+|. +.|++||..-|+.-.++++++.+.+.
T Consensus 76 ~lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~ 152 (473)
T KOG2276|consen 76 PLPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGI 152 (473)
T ss_pred ccChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCc
Confidence 112222222244 356789999999999875 38999999999999999999999998
Q ss_pred CCCCcEEEEEeCCCCCCccchHHHHhc
Q 002402 221 GFKNAVIFLFNTGEEEGLNGAHSFVTQ 247 (927)
Q Consensus 221 ~p~~~IvFlf~~aEE~Gl~GS~~fv~~ 247 (927)
.++.+|+|+|-+-||.|-.|-...+++
T Consensus 153 ~lpvnv~f~~EgmEEsgS~~L~~l~~~ 179 (473)
T KOG2276|consen 153 DLPVNVVFVFEGMEESGSEGLDELIEK 179 (473)
T ss_pred cccceEEEEEEechhccCccHHHHHHH
Confidence 999999999999999998887776644
No 83
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=96.64 E-value=0.1 Score=62.42 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=114.4
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccch
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 241 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS 241 (927)
+++||++.++... .++.|.+++.+-+++.. | .-|..|+|.+|.++|++++.. --.++|+|++.+.|. .|.
T Consensus 2 ~G~nvy~i~rapR--~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~-~wsKDii~l~~~~~~---~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAPR--GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQS-YWSKDIIFLFTDDEL---AGM 71 (504)
T ss_pred CceEEEEEEecCC--CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhch-hhhccEEEEecCCcc---hHH
Confidence 4689999997642 46778999999998763 3 456999999999999999864 347999999998654 678
Q ss_pred HHHHhcC--C---------c---cCCceEEEEeccCCCCCCcc-ceecCCC-----HHHHHHHHHHhcCC---CCc----
Q 002402 242 HSFVTQH--P---------W---STTIRVAIDLEAMGIGGKSG-LFQAGPH-----PWAVENFAAAAKYP---SGQ---- 294 (927)
Q Consensus 242 ~~fv~~h--~---------~---~~~i~a~INLD~~G~gG~~~-lfq~g~~-----~~li~~y~~~a~~p---~~~---- 294 (927)
++|++++ . . +..+++.||+|-.+.....+ +.-.|-| --+++...+.+.+. .+.
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 8888653 1 1 23689999999887654443 2223432 23444433322111 000
Q ss_pred ----------------chhhhhhccCCCCCCCchHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHH
Q 002402 295 ----------------VTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENML 358 (927)
Q Consensus 295 ----------------~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl 358 (927)
++...+.+.+.-.....|..|.+ .+|.++.+.-.... .+. . ....+.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~~------~~~--~---~~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKST------GPG--P---HDFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccCC------CCC--C---cCHHHHHHHHH
Confidence 00011111122223567999998 78999998422111 110 1 12456777777
Q ss_pred HHHHHHhcC
Q 002402 359 AFLLQAASS 367 (927)
Q Consensus 359 ~lv~~la~s 367 (927)
..+|.+-|-
T Consensus 220 ~~~RslNNL 228 (504)
T PF04114_consen 220 GIFRSLNNL 228 (504)
T ss_pred HHHHHHHHH
Confidence 777877774
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=95.25 E-value=0.33 Score=56.30 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=88.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCC
Q 002402 102 HPVGSDALDRALQVYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAEN 181 (927)
Q Consensus 102 r~~GS~~n~~a~~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~y~~~~NVIa~i~G~~~~~~~~~ 181 (927)
+|-=+-.+.++.+ ||.+.|++.| +++ ++. + ...+=|++.+.|. .+++
T Consensus 24 ~PEL~f~E~~Ta~-~i~~~L~~~g------~~~-~~~-----------~----------~~~TGvva~~~~g----~~g~ 70 (392)
T COG1473 24 HPELGFEEYRTAA-YIAEKLEELG------FEV-VEV-----------G----------GGKTGVVATLKGG----KPGP 70 (392)
T ss_pred CCccchhHHHHHH-HHHHHHHHcC------Cee-Eec-----------c----------CCceEEEEEEcCC----CCCC
Confidence 4555666668899 9999999998 341 110 1 0125688999864 3555
Q ss_pred EEEEEeecccccC-----------CCC----CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHHh
Q 002402 182 AILVSSHIDTVFA-----------AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 246 (927)
Q Consensus 182 ~VLl~AHyDSv~~-----------spG----A~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv~ 246 (927)
.|.+=|-||-.|. .+| -+-| .-++++|-+|+.|++....++.+|+|+|-.|||.+- |++..++
T Consensus 71 tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~-Ga~~mi~ 148 (392)
T COG1473 71 TIALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG-GAKAMIE 148 (392)
T ss_pred EEEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc-cHHHHHh
Confidence 9999999999884 244 2333 336888999999998766899999999999999876 9999985
Q ss_pred cCCccCC-ceEEEEec
Q 002402 247 QHPWSTT-IRVAIDLE 261 (927)
Q Consensus 247 ~h~~~~~-i~a~INLD 261 (927)
+- ..++ +.+++-+-
T Consensus 149 ~G-~~~~~vD~v~g~H 163 (392)
T COG1473 149 DG-VFDDFVDAVFGLH 163 (392)
T ss_pred cC-CccccccEEEEec
Confidence 43 2333 55655543
No 85
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=93.60 E-value=0.12 Score=60.19 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCccchHHHHhcCCccCCceEEEEec
Q 002402 199 GDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 261 (927)
Q Consensus 199 ~Dn~sGVA~mLElaR~L~~~~-~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h~~~~~i~a~INLD 261 (927)
.||.+|++.++++++++.+.. .-+..+|++.|+++||.|+.|++.|.-. .-.+...-++|
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a---~f~a~~ay~iD 203 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA---RFLADFAYTLD 203 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH---hhhcceeEecC
Confidence 377799999999999999642 3466789999999999999999988532 22455666777
No 86
>PRK02813 putative aminopeptidase 2; Provisional
Probab=87.01 E-value=1.8 Score=50.97 Aligned_cols=141 Identities=14% Similarity=0.099 Sum_probs=83.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCcc---chHH-----------HHhcCC-----ccCCceE
Q 002402 196 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRV 256 (927)
Q Consensus 196 pGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~---GS~~-----------fv~~h~-----~~~~i~a 256 (927)
.++-||-+||.+++|+++...+ +.++++++++-||.|.. ||+. -..... ..-+-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 5788999999999999987532 67999999999999988 7774 110000 0113345
Q ss_pred EEEeccCCCC------------------CCcccee--cC--CCHHHHHHHHHHh---cCCCCcchhhhhhccCCCCCCCc
Q 002402 257 AIDLEAMGIG------------------GKSGLFQ--AG--PHPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATD 311 (927)
Q Consensus 257 ~INLD~~G~g------------------G~~~lfq--~g--~~~~li~~y~~~a---~~p~~~~l~~e~f~~g~ips~TD 311 (927)
+|.+|++-+. |..+-+. .+ +++.....+.+.+ .-|+ |.....+-.|.+||
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-----Q~~v~~~d~~gGst 379 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-----QEFVNRSDMPCGST 379 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCccH
Confidence 7777765332 1111111 01 2344444433332 2232 21112234567889
Q ss_pred hHHhhh-cCCCeEEEEEeeCCCCCCCCCCCCcCCCCHh
Q 002402 312 FQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPG 348 (927)
Q Consensus 312 ~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~ 348 (927)
-.++.. ..|+|.+|+.-- --.=||+..+...-|..
T Consensus 380 ig~i~~s~~Gi~tvdiGiP--~l~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 380 IGPITAARLGIRTVDVGAP--MLAMHSARELAGVKDHA 415 (428)
T ss_pred HHHHHHhCCCCcEEEeChh--hcccccHHHHccHHHHH
Confidence 888865 479999998631 22458888777655444
No 87
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=7.4 Score=46.74 Aligned_cols=93 Identities=19% Similarity=0.312 Sum_probs=68.7
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccch
Q 002402 162 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 241 (927)
Q Consensus 162 ~~~NVIa~i~G~~~~~~~~~~VLl~AHyDSv~~spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS 241 (927)
.+.||.+.+++.. .+..+.+++..-|+... |. |-.|++.++.+++.+++.. --.++|+|++++++ ..|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~~---~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDGP---ALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCCc---cccH
Confidence 3789999998642 45678899999998763 33 4789999999999998743 35789999999984 5677
Q ss_pred HHHHhcC-C-c---------------cCCceEEEEeccCCC
Q 002402 242 HSFVTQH-P-W---------------STTIRVAIDLEAMGI 265 (927)
Q Consensus 242 ~~fv~~h-~-~---------------~~~i~a~INLD~~G~ 265 (927)
.+|.+.+ . . +....+.+++|....
T Consensus 188 ~AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~ 228 (617)
T KOG3566|consen 188 DAWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEK 228 (617)
T ss_pred HHHHHHhhccccccccccccccccccccceeeEEEEEeccc
Confidence 7887653 2 0 123467888887754
No 88
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=84.75 E-value=3.9 Score=48.73 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=90.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCccchHHHHhcC-Cc-cC------Cce-----------
Q 002402 196 EGAGDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQH-PW-ST------TIR----------- 255 (927)
Q Consensus 196 pGA~Dn~sGVA~mLElaR~L~~~~-~~p~~~IvFlf~~aEE~Gl~GS~~fv~~h-~~-~~------~i~----------- 255 (927)
.++-||-.||.++||+++...... ..+....++++++-||.|..|+++-.... |. .+ ...
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 467899999999999998765310 11344455555999999998887754221 11 00 111
Q ss_pred ----EEEEeccCCC------------------CCCcccee----cCCCHHHHHHHHHHhc---CCCCcchhhhhhccCCC
Q 002402 256 ----VAIDLEAMGI------------------GGKSGLFQ----AGPHPWAVENFAAAAK---YPSGQVTAQDLFASGAI 306 (927)
Q Consensus 256 ----a~INLD~~G~------------------gG~~~lfq----~g~~~~li~~y~~~a~---~p~~~~l~~e~f~~g~i 306 (927)
.+|..|++-+ +|..+-+. ..+++.++..+.+.++ -|+ |.....+-.
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~-----Q~~~~~~d~ 401 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPI-----QEFVVKNDS 401 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCC
Confidence 6788887533 12222121 1124555555544432 232 221122345
Q ss_pred CCCCchHHhhh-cCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHH
Q 002402 307 TSATDFQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 362 (927)
Q Consensus 307 ps~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~ 362 (927)
|++||-.++.. ..|+|.+|+.-- --.=||+..+...-|.. ++.+.+.++..
T Consensus 402 ~~GsTig~i~~s~~Gi~tvDiGiP--~l~MHS~rE~~~~~D~~---~~~~l~~af~~ 453 (465)
T PTZ00371 402 PCGSTIGPILSSNLGIRTVDIGIP--QLAMHSIREMCGVVDIY---YLVKLIKAFFT 453 (465)
T ss_pred CCcchHHHHHHhCCCCcEEEechh--hcccccHHHHccHHHHH---HHHHHHHHHHH
Confidence 67888888866 479999998631 22459988877665555 44444444443
No 89
>PRK02256 putative aminopeptidase 1; Provisional
Probab=78.21 E-value=2.9 Score=49.63 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCccchHHHH
Q 002402 195 AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 245 (927)
Q Consensus 195 spGA~Dn~sGVA~mLElaR~L~~~~~~p~~~IvFlf~~aEE~Gl~GS~~fv 245 (927)
+.++-||-.||.+++|+++... .++..+++++++-||.|..|++.-.
T Consensus 255 ~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 255 GAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred eccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 3688999999999999998654 3567999999999999988776644
No 90
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=58.22 E-value=3.4e+02 Score=32.35 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh
Q 002402 582 RPLKLATLLLGLAVPVLVSAG--NFIRLANVIVAIV 615 (927)
Q Consensus 582 ~~~~~~~~~~~~~~P~l~~~~--~~~~~~~~~~p~~ 615 (927)
++-.|...-+ +..|+++... ..+..+.+.+|+|
T Consensus 316 ~y~~w~~~r~-~~~p~~~~~~~~vi~pi~~~~~p~~ 350 (477)
T PRK12821 316 TYAFWLLIRL-LFAPAIFLLDIIVIYPILLLLTPIM 350 (477)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333333 7888886543 3333455556665
No 91
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=46.23 E-value=2.2e+02 Score=27.36 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=35.0
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 002402 421 TASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYV 471 (927)
Q Consensus 421 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~ 471 (927)
+..+.+.+.....++.+...+.+.....+...+.++|.++.+- +..|+++
T Consensus 31 ~~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 31 FFTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 3444444444456666666666667888888899999999865 6788875
No 92
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=40.15 E-value=8.2e+02 Score=30.36 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002402 475 WLAVGLFAAPAFLGALTGQHLGYIILK 501 (927)
Q Consensus 475 ~l~igly~~p~~~g~~~~~~l~~~~~~ 501 (927)
.+++|+|+...++-..+|.+.+|..+.
T Consensus 148 ml~~giy~~~~l~~~~ip~~~gff~l~ 174 (952)
T TIGR02921 148 MLLFGIYAAALLAFFAIPAAAGFFELL 174 (952)
T ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 367788888877777777777766553
No 93
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=36.52 E-value=1.3e+03 Score=31.67 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 002402 445 MLVFSVSFAVVIAFILPQIS 464 (927)
Q Consensus 445 ~~~~~~~~~~~va~~~~~~~ 464 (927)
++-+++...++||+++|...
T Consensus 2261 sFn~av~iN~lVAffYPf~~ 2280 (2706)
T KOG3533|consen 2261 SFNLAVIINALVAFFYPFPE 2280 (2706)
T ss_pred hhhHHHHHHHHHHhccCCCC
Confidence 55677888899999999654
No 94
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=34.63 E-value=2.9e+02 Score=26.08 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=7.1
Q ss_pred HHhhcCCCCCCCh
Q 002402 572 EATLTPVRFPRPL 584 (927)
Q Consensus 572 ~~~l~~~~~~~~~ 584 (927)
.....++|+.+..
T Consensus 64 al~vRRlhD~G~s 76 (120)
T PF05656_consen 64 ALTVRRLHDIGRS 76 (120)
T ss_pred HHHhhhhhcCCCC
Confidence 3444566775544
No 95
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=34.42 E-value=43 Score=27.52 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=22.3
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 002402 653 VHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSE 687 (927)
Q Consensus 653 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~pf~~ 687 (927)
..+++|.|.-+.++.++.+++++.+..+...||++
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45666666666566666555555566777788854
No 96
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=32.80 E-value=5.9e+02 Score=30.30 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002402 587 ATLLLGLAVPVLVSAGNFIRLANVIVAIVVR 617 (927)
Q Consensus 587 ~~~~~~~~~P~l~~~~~~~~~~~~~~p~~gR 617 (927)
..+.-.++.|+++...+....-.++.|.++|
T Consensus 188 ~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 188 YTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 4445556788888777776666666777666
No 97
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=32.66 E-value=78 Score=36.31 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=43.9
Q ss_pred CCCCchHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 002402 307 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 367 (927)
Q Consensus 307 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~la~s 367 (927)
...||...|.+ .|+|++.+.-. +...-|++. |+++.+.+....+....++.+|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999987 89999866332 223567765 7888999999999999999999874
No 98
>PRK07522 acetylornithine deacetylase; Provisional
Probab=31.45 E-value=1.2e+02 Score=34.70 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHhcCCCCcchhhhhhccCCCCCCCchHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHH
Q 002402 277 HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGEN 356 (927)
Q Consensus 277 ~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~ 356 (927)
+..+++.+++....+... ..+..||...|.. .|+|++.+... +....||+. |+++.+.+.+..+.
T Consensus 311 ~~~~v~~~~~~~~~~~~~----------~~~~~td~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~i~~l~~~~~~ 375 (385)
T PRK07522 311 DAAAARLVRALTGDNDLR----------KVAYGTEAGLFQR-AGIPTVVCGPG-SIEQAHKPD---EFVELAQLAACEAF 375 (385)
T ss_pred CcHHHHHHHHHhCCCCcc----------eEeeecchHHhcc-CCCCEEEECCC-ChhhCCCCC---ccccHHHHHHHHHH
Confidence 345677776654332210 1234699999986 89999866532 223678866 77899999999999
Q ss_pred HHHHHHHHh
Q 002402 357 MLAFLLQAA 365 (927)
Q Consensus 357 vl~lv~~la 365 (927)
+..++..+|
T Consensus 376 ~~~~~~~~~ 384 (385)
T PRK07522 376 LRRLLASLA 384 (385)
T ss_pred HHHHHHHHh
Confidence 999988876
No 99
>PRK08596 acetylornithine deacetylase; Validated
Probab=25.55 E-value=1.1e+02 Score=35.78 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=45.3
Q ss_pred CCCCchHHhhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 002402 307 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 367 (927)
Q Consensus 307 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~vl~lv~~la~s 367 (927)
+..||...|.+ .|+|++.+.... ....|++. |+++.+.+.+..+.+..++..+...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 45799999988 899999776432 34678865 7889999999999999999988754
No 100
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.30 E-value=25 Score=38.86 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=0.0
Q ss_pred CCCceEEEEEEEe
Q 002402 848 KNAVSKFDLDLYW 860 (927)
Q Consensus 848 ~~~P~~F~l~l~~ 860 (927)
+..|-+-.=+.+.
T Consensus 322 dggPp~Lt~~ve~ 334 (381)
T PF05297_consen 322 DGGPPKLTEEVEN 334 (381)
T ss_dssp -------------
T ss_pred CCCCCcccccccc
Confidence 4555554444444
No 101
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=24.05 E-value=1.3e+03 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 002402 585 KLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDR 620 (927)
Q Consensus 585 ~~~~~~~~~~~P~l~~~~~~~~~~~~~~p~~gR~g~ 620 (927)
|....+++.+-|+++.+++=+.+.++.+....+.|.
T Consensus 303 ~ig~~i~g~~~~~lV~~G~H~~~~pi~~~~i~~~G~ 338 (473)
T PRK11007 303 PIGAALFGFLYAPLVITGVHQTTLAIDLQMIQSMGG 338 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Confidence 456677778888888888888888888777766664
No 102
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=23.72 E-value=1.5e+02 Score=27.42 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=14.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhhcccccc
Q 002402 39 RSAKRSGLAWTVAFAAFVYATYGVYYYQYEH 69 (927)
Q Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 69 (927)
+..+++... +-+.++++-..|.++.|....
T Consensus 27 ~~sp~W~~p-~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 27 KPSPRWYAP-LMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred CCCCccHHH-HHHHHHHHHHHHHhhhhcccC
Confidence 334444333 333334444456676676554
No 103
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.72 E-value=8.3e+02 Score=29.95 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhccc--chHHHHHHHH
Q 002402 535 GFLQWLILLALGNFYKIG--STFIALFWLV 562 (927)
Q Consensus 535 ~~~~w~ll~~~~t~~~i~--S~y~~~~~~~ 562 (927)
+-++|+.++.+.-++-+. .+|.+.+-++
T Consensus 193 GSifwa~~~aL~YFYMVsaWGGYvFiiNLI 222 (751)
T KOG2292|consen 193 GSIFWAACCALAYFYMVSAWGGYVFIINLI 222 (751)
T ss_pred chHHHHHHHHHHHHhheeeccceEEEEech
Confidence 457888888777665554 4666544433
No 104
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=20.74 E-value=1.7e+03 Score=27.89 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 002402 585 KLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDR 620 (927)
Q Consensus 585 ~~~~~~~~~~~P~l~~~~~~~~~~~~~~p~~gR~g~ 620 (927)
|....+++.+-|++..+++=+.+.++.+..+...|.
T Consensus 289 ~i~g~i~g~~~~~lV~~G~H~~l~pi~~~~ia~~G~ 324 (627)
T PRK09824 289 AFAGAVMGAFWQVFVIFGLHWGLVPLMINNLTVLGH 324 (627)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhCc
Confidence 455667777888888888878888887777666664
No 105
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=1.1e+02 Score=31.89 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=18.5
Q ss_pred HHhccCCcccCC-ccccccccceeee
Q 002402 729 VEQIKEGFVCGR-DNVVDFVTLSMEY 753 (927)
Q Consensus 729 ~~~c~~e~~Cg~-~~~~~f~~~p~y~ 753 (927)
+..|+.++.|-. ++.+++-+.|+|.
T Consensus 60 lh~Cegd~Vck~~~~kIPyfNAPIyl 85 (215)
T KOG3262|consen 60 LHMCEGDLVCKLTNKKIPYFNAPIYL 85 (215)
T ss_pred hhhcCCceEEeeccccCCCCCCceee
Confidence 477999999984 4456777777664
Done!