Query 002403
Match_columns 927
No_of_seqs 224 out of 445
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 23:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 5E-275 1E-279 2292.8 54.2 866 4-925 38-918 (1018)
2 COG0189 RimK Glutathione synth 100.0 6.1E-30 1.3E-34 279.4 14.2 253 13-295 35-294 (318)
3 PF08443 RimK: RimK-like ATP-g 99.9 4.6E-28 9.9E-33 245.1 7.2 171 94-295 1-174 (190)
4 PRK10446 ribosomal protein S6 99.9 1.4E-24 3E-29 233.4 18.0 249 8-290 2-265 (300)
5 PLN02941 inositol-tetrakisphos 99.9 2.9E-24 6.3E-29 235.7 20.5 268 4-309 19-323 (328)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 4.3E-23 9.2E-28 215.3 16.3 249 9-290 2-256 (277)
7 TIGR02144 LysX_arch Lysine bio 99.9 2.1E-22 4.6E-27 212.1 15.7 238 22-290 11-254 (280)
8 PRK05246 glutathione synthetas 99.9 6.8E-23 1.5E-27 222.7 11.8 198 52-289 75-285 (316)
9 TIGR01380 glut_syn glutathione 99.9 1.2E-22 2.6E-27 221.0 11.8 199 52-289 74-284 (312)
10 PRK12458 glutathione synthetas 99.9 1.9E-21 4.1E-26 214.1 11.7 199 52-288 75-296 (338)
11 PF00328 His_Phos_2: Histidine 99.8 1.8E-17 3.9E-22 176.2 18.6 139 676-920 197-335 (347)
12 TIGR02291 rimK_rel_E_lig alpha 99.8 2.7E-18 5.9E-23 188.0 12.4 185 84-292 25-272 (317)
13 TIGR03103 trio_acet_GNAT GNAT- 99.7 5.8E-18 1.3E-22 197.3 9.7 178 84-292 285-524 (547)
14 PRK01372 ddl D-alanine--D-alan 99.7 5.3E-16 1.1E-20 166.1 20.5 247 6-290 4-270 (304)
15 PRK14016 cyanophycin synthetas 99.7 6E-17 1.3E-21 194.3 10.3 181 84-294 202-451 (727)
16 TIGR02068 cya_phycin_syn cyano 99.7 1.1E-16 2.4E-21 195.2 10.0 176 85-290 202-446 (864)
17 PRK02471 bifunctional glutamat 99.6 1.4E-15 3E-20 183.0 11.2 184 83-292 475-728 (752)
18 PRK14571 D-alanyl-alanine synt 99.5 1.5E-13 3.3E-18 147.9 17.0 242 20-299 18-274 (299)
19 TIGR01205 D_ala_D_alaTIGR D-al 99.5 2.6E-13 5.7E-18 145.9 16.5 209 55-289 62-284 (315)
20 TIGR01435 glu_cys_lig_rel glut 99.5 3.9E-14 8.4E-19 169.4 10.7 179 84-290 463-712 (737)
21 PF02955 GSH-S_ATP: Prokaryoti 99.5 5.9E-14 1.3E-18 142.5 5.5 145 111-290 12-162 (173)
22 PRK14569 D-alanyl-alanine synt 99.4 2.4E-12 5.1E-17 139.3 15.6 245 6-289 3-264 (296)
23 PRK01966 ddl D-alanyl-alanine 99.3 8.3E-12 1.8E-16 137.2 14.3 206 56-289 81-300 (333)
24 PRK12767 carbamoyl phosphate s 99.3 7.8E-12 1.7E-16 135.0 13.9 194 56-288 69-268 (326)
25 PRK06849 hypothetical protein; 99.3 9.5E-12 2.1E-16 138.7 14.3 194 57-287 77-273 (389)
26 TIGR01142 purT phosphoribosylg 99.3 1.1E-11 2.5E-16 136.8 13.4 197 57-287 63-269 (380)
27 PRK14570 D-alanyl-alanine synt 99.3 5.3E-11 1.2E-15 133.1 16.6 208 56-289 87-315 (364)
28 PRK14572 D-alanyl-alanine synt 99.3 1.7E-11 3.7E-16 135.5 11.7 190 72-290 105-315 (347)
29 PRK14568 vanB D-alanine--D-lac 99.3 1E-10 2.2E-15 129.2 17.5 199 56-288 90-308 (343)
30 PRK13790 phosphoribosylamine-- 99.2 5.7E-11 1.2E-15 133.0 12.0 193 69-288 38-248 (379)
31 PF05770 Ins134_P3_kin: Inosit 99.2 1.8E-10 4E-15 126.4 12.0 259 4-301 5-300 (307)
32 TIGR01161 purK phosphoribosyla 99.1 6.1E-10 1.3E-14 122.8 14.2 193 56-288 60-263 (352)
33 PRK09288 purT phosphoribosylgl 99.1 3.1E-10 6.7E-15 126.2 11.7 198 56-288 75-283 (395)
34 PF13535 ATP-grasp_4: ATP-gras 99.1 1.1E-10 2.3E-15 114.6 5.9 162 93-288 1-177 (184)
35 PRK00885 phosphoribosylamine-- 99.1 5.5E-10 1.2E-14 126.0 10.9 207 57-288 63-286 (420)
36 cd07061 HP_HAP_like Histidine 99.0 1.2E-09 2.6E-14 114.0 12.0 49 495-547 28-78 (242)
37 PRK07206 hypothetical protein; 99.0 2.9E-09 6.4E-14 119.3 15.2 208 56-287 70-285 (416)
38 PRK06019 phosphoribosylaminoim 99.0 5.4E-09 1.2E-13 116.7 14.9 196 56-289 63-266 (372)
39 PRK05294 carB carbamoyl phosph 99.0 1.4E-09 3E-14 136.3 10.2 198 56-288 629-839 (1066)
40 PRK05586 biotin carboxylase; V 99.0 2.1E-09 4.5E-14 122.6 10.2 203 55-288 73-291 (447)
41 PRK08462 biotin carboxylase; V 98.9 1.6E-09 3.5E-14 123.1 8.3 200 56-288 76-293 (445)
42 PRK02186 argininosuccinate lya 98.9 4.6E-09 9.9E-14 129.5 12.8 203 51-288 65-275 (887)
43 PRK07178 pyruvate carboxylase 98.9 3.3E-09 7.2E-14 122.2 10.6 204 56-289 73-291 (472)
44 PRK08463 acetyl-CoA carboxylas 98.9 2.8E-09 6E-14 123.1 9.4 205 56-289 73-292 (478)
45 TIGR01369 CPSaseII_lrg carbamo 98.9 1.7E-08 3.7E-13 126.6 16.5 199 56-288 629-839 (1050)
46 PRK08591 acetyl-CoA carboxylas 98.9 2.9E-09 6.2E-14 121.1 8.3 205 56-288 74-291 (451)
47 TIGR00877 purD phosphoribosyla 98.9 7.6E-09 1.7E-13 116.6 11.4 204 57-288 65-288 (423)
48 PRK08654 pyruvate carboxylase 98.9 3.9E-09 8.4E-14 122.8 9.3 203 56-288 74-290 (499)
49 KOG1057 Arp2/3 complex-interac 98.9 2.4E-10 5.3E-15 134.0 -0.6 66 836-925 780-845 (1018)
50 PRK06111 acetyl-CoA carboxylas 98.9 1E-08 2.2E-13 116.3 12.2 210 56-289 74-292 (450)
51 PRK06395 phosphoribosylamine-- 98.9 9.3E-09 2E-13 117.7 10.9 205 57-287 66-290 (435)
52 PF02655 ATP-grasp_3: ATP-gras 98.8 4.7E-09 1E-13 104.5 6.7 149 94-287 1-155 (161)
53 TIGR00514 accC acetyl-CoA carb 98.8 2.1E-08 4.5E-13 114.6 10.2 199 56-288 74-291 (449)
54 TIGR01235 pyruv_carbox pyruvat 98.8 1.4E-08 3E-13 127.7 8.8 202 56-288 74-291 (1143)
55 PF14397 ATPgrasp_ST: Sugar-tr 98.8 2.7E-08 5.9E-13 108.2 10.0 187 86-289 16-257 (285)
56 PRK14573 bifunctional D-alanyl 98.7 1.7E-07 3.7E-12 114.7 17.0 209 56-289 526-755 (809)
57 PF15632 ATPgrasp_Ter: ATP-gra 98.7 8.7E-08 1.9E-12 106.5 12.9 197 56-287 66-278 (329)
58 PRK12815 carB carbamoyl phosph 98.7 5E-08 1.1E-12 122.6 12.0 196 56-288 630-837 (1068)
59 PLN02948 phosphoribosylaminoim 98.7 6.9E-08 1.5E-12 114.3 11.7 199 57-290 84-290 (577)
60 PLN02257 phosphoribosylamine-- 98.7 1E-07 2.2E-12 109.3 12.4 194 67-287 71-287 (434)
61 PRK12833 acetyl-CoA carboxylas 98.7 5.6E-08 1.2E-12 112.0 9.3 205 56-289 77-295 (467)
62 PRK12999 pyruvate carboxylase; 98.6 9.6E-08 2.1E-12 120.6 9.8 201 56-288 78-295 (1146)
63 PF07478 Dala_Dala_lig_C: D-al 98.6 4.8E-08 1.1E-12 101.4 5.8 159 103-290 1-175 (203)
64 PRK05294 carB carbamoyl phosph 98.6 2E-07 4.2E-12 117.3 11.1 197 56-287 82-301 (1066)
65 PLN02735 carbamoyl-phosphate s 98.5 5.8E-07 1.2E-11 113.4 14.1 199 56-289 649-875 (1102)
66 PF02750 Synapsin_C: Synapsin, 98.5 4.1E-07 8.8E-12 94.2 9.6 168 86-291 1-179 (203)
67 PLN02735 carbamoyl-phosphate s 98.5 4.8E-07 1E-11 114.2 12.2 197 56-287 98-318 (1102)
68 PRK06524 biotin carboxylase-li 98.5 3.4E-07 7.5E-12 106.2 10.1 183 74-287 119-320 (493)
69 PRK13789 phosphoribosylamine-- 98.5 7.6E-07 1.6E-11 102.0 11.4 205 57-289 69-294 (426)
70 COG1181 DdlA D-alanine-D-alani 98.5 7.3E-07 1.6E-11 98.8 10.8 191 72-290 78-286 (317)
71 COG1821 Predicted ATP-utilizin 98.5 3.1E-07 6.7E-12 98.3 7.3 167 56-288 73-254 (307)
72 TIGR01369 CPSaseII_lrg carbamo 98.4 8.1E-07 1.8E-11 111.7 11.8 196 56-288 81-300 (1050)
73 TIGR02712 urea_carbox urea car 98.3 1.5E-06 3.3E-11 110.5 10.7 204 56-289 73-291 (1201)
74 PRK12815 carB carbamoyl phosph 98.3 3.6E-06 7.8E-11 106.2 11.8 206 56-298 82-309 (1068)
75 PRK05784 phosphoribosylamine-- 98.2 5E-06 1.1E-10 97.0 11.3 205 56-287 69-307 (486)
76 PF14398 ATPgrasp_YheCD: YheC/ 98.2 6.3E-06 1.4E-10 88.9 9.3 193 79-293 6-236 (262)
77 COG0439 AccC Biotin carboxylas 97.7 7.7E-05 1.7E-09 86.4 8.2 201 56-287 74-290 (449)
78 COG2232 Predicted ATP-dependen 97.6 0.0003 6.6E-09 78.2 10.2 170 55-288 82-272 (389)
79 PRK13278 purP 5-formaminoimida 97.6 0.0015 3.2E-08 74.1 16.0 173 86-290 113-312 (358)
80 PF02786 CPSase_L_D2: Carbamoy 97.4 3E-05 6.5E-10 81.5 -0.2 165 96-289 1-179 (211)
81 PRK13277 5-formaminoimidazole- 97.3 0.0009 2E-08 75.8 9.0 162 95-287 125-316 (366)
82 COG0458 CarB Carbamoylphosphat 97.0 0.0028 6E-08 72.5 9.1 194 56-292 70-293 (400)
83 PF02222 ATP-grasp: ATP-grasp 96.8 0.0041 9E-08 63.8 8.3 149 104-287 1-158 (172)
84 PF01071 GARS_A: Phosphoribosy 96.4 0.016 3.4E-07 60.9 9.5 164 96-287 2-186 (194)
85 COG0027 PurT Formate-dependent 96.3 0.0094 2E-07 66.4 7.6 220 11-287 38-282 (394)
86 KOG3895 Synaptic vesicle prote 96.2 0.0029 6.4E-08 70.8 2.9 200 76-318 180-394 (488)
87 COG0026 PurK Phosphoribosylami 95.8 0.054 1.2E-06 61.8 10.3 204 61-304 66-279 (375)
88 PF14305 ATPgrasp_TupA: TupA-l 95.3 0.73 1.6E-05 49.8 16.4 179 90-287 14-215 (239)
89 COG3919 Predicted ATP-grasp en 93.0 0.65 1.4E-05 52.0 10.4 157 93-287 111-285 (415)
90 KOG3672 Histidine acid phospha 91.6 0.11 2.5E-06 59.3 2.6 59 495-560 178-240 (487)
91 PF14243 DUF4343: Domain of un 88.7 3.2 6.9E-05 41.1 9.6 82 192-290 32-117 (130)
92 COG1038 PycA Pyruvate carboxyl 85.3 1.2 2.6E-05 55.2 5.5 178 82-292 107-301 (1149)
93 COG0151 PurD Phosphoribosylami 83.3 2 4.3E-05 50.2 5.9 187 73-287 79-286 (428)
94 PRK00696 sucC succinyl-CoA syn 80.3 0.5 1.1E-05 54.0 -0.3 42 98-152 6-48 (388)
95 KOG0238 3-Methylcrotonyl-CoA c 79.1 2.1 4.5E-05 51.0 4.1 181 83-292 98-291 (670)
96 PF03133 TTL: Tubulin-tyrosine 78.2 1.1 2.4E-05 48.8 1.6 55 146-218 67-127 (292)
97 PRK10172 phosphoanhydride phos 76.5 1.8 3.9E-05 50.9 2.7 54 492-547 77-135 (436)
98 cd07040 HP Histidine phosphata 70.8 3.6 7.7E-05 39.3 2.9 24 520-543 48-71 (153)
99 COG4770 Acetyl/propionyl-CoA c 70.1 5.9 0.00013 47.9 4.9 180 83-293 102-296 (645)
100 KOG3720 Lysosomal & prostatic 69.4 5 0.00011 46.8 4.1 51 495-548 80-133 (411)
101 KOG3720 Lysosomal & prostatic 68.7 3.2 7E-05 48.3 2.4 17 354-370 32-48 (411)
102 PHA02117 glutathionylspermidin 68.3 12 0.00026 43.8 6.8 65 146-228 309-379 (397)
103 PRK10172 phosphoanhydride phos 66.1 4.3 9.4E-05 47.8 2.8 45 859-921 322-367 (436)
104 TIGR01016 sucCoAbeta succinyl- 62.6 4.3 9.3E-05 46.5 1.9 42 98-152 6-48 (386)
105 PF13549 ATP-grasp_5: ATP-gras 59.5 3.8 8.2E-05 44.1 0.7 47 96-155 11-57 (222)
106 PRK10507 bifunctional glutathi 58.4 21 0.00045 44.1 6.7 73 146-238 529-607 (619)
107 KOG0369 Pyruvate carboxylase [ 56.7 17 0.00037 45.0 5.4 178 87-292 138-327 (1176)
108 PF00300 His_Phos_1: Histidine 50.8 12 0.00027 35.7 2.6 21 522-542 50-70 (158)
109 PRK10173 glucose-1-phosphatase 49.7 12 0.00026 43.8 2.8 55 492-547 75-133 (413)
110 PF08442 ATP-grasp_2: ATP-gras 49.3 7.6 0.00016 41.3 1.0 42 99-153 6-48 (202)
111 PLN00124 succinyl-CoA ligase [ 45.8 8.9 0.00019 45.1 0.9 44 98-152 33-77 (422)
112 PF14403 CP_ATPgrasp_2: Circul 44.6 24 0.00052 41.9 4.2 191 6-235 185-429 (445)
113 TIGR03162 ribazole_cobC alpha- 44.0 16 0.00035 36.5 2.3 21 522-542 46-66 (177)
114 cd07067 HP_PGM_like Histidine 43.5 17 0.00037 35.2 2.3 21 522-542 50-70 (153)
115 cd02639 R3H_RRM R3H domain of 42.6 28 0.00061 30.6 3.2 34 235-268 11-44 (60)
116 PRK14046 malate--CoA ligase su 39.6 17 0.00037 42.3 1.9 21 99-119 7-27 (392)
117 PRK03482 phosphoglycerate muta 36.7 26 0.00055 36.6 2.5 21 522-542 50-70 (215)
118 PRK13463 phosphatase PhoE; Pro 36.0 26 0.00056 36.5 2.4 20 522-541 51-70 (203)
119 COG1181 DdlA D-alanine-D-alani 34.8 14 0.0003 41.8 0.3 74 142-228 85-160 (317)
120 PRK10173 glucose-1-phosphatase 34.0 31 0.00068 40.5 3.0 46 859-921 304-350 (413)
121 smart00855 PGAM Phosphoglycera 33.0 32 0.0007 33.6 2.5 21 522-542 51-71 (155)
122 COG0406 phoE Broad specificity 32.7 31 0.00067 35.5 2.4 23 522-544 53-75 (208)
123 PTZ00123 phosphoglycerate muta 31.2 34 0.00075 36.7 2.5 21 522-542 39-59 (236)
124 PRK15004 alpha-ribazole phosph 30.6 34 0.00073 35.3 2.2 20 522-541 49-68 (199)
125 TIGR00249 sixA phosphohistidin 30.0 40 0.00086 33.9 2.5 21 522-542 47-67 (152)
126 TIGR03848 MSMEG_4193 probable 30.0 36 0.00078 35.2 2.3 21 522-542 49-69 (204)
127 TIGR00640 acid_CoA_mut_C methy 26.7 36 0.00078 33.8 1.6 71 7-79 55-125 (132)
128 PRK01295 phosphoglyceromutase; 24.8 54 0.0012 34.4 2.6 21 522-542 53-73 (206)
129 KOG2156 Tubulin-tyrosine ligas 24.4 15 0.00033 44.2 -1.7 72 111-216 283-360 (662)
130 PRK14115 gpmA phosphoglyceromu 24.1 56 0.0012 35.5 2.6 21 522-542 51-71 (247)
131 PTZ00122 phosphoglycerate muta 22.9 67 0.0014 36.1 2.9 22 522-543 156-177 (299)
132 PRK14116 gpmA phosphoglyceromu 22.0 62 0.0014 34.5 2.4 20 522-541 52-71 (228)
133 PRK10848 phosphohistidine phos 21.8 67 0.0014 32.6 2.4 21 522-542 47-67 (159)
134 KOG1382 Multiple inositol poly 21.6 75 0.0016 38.1 3.1 30 522-551 162-191 (467)
135 PRK14119 gpmA phosphoglyceromu 21.3 68 0.0015 34.1 2.5 21 522-542 52-72 (228)
136 PRK14118 gpmA phosphoglyceromu 20.4 70 0.0015 34.1 2.4 21 522-542 51-71 (227)
137 PRK13462 acid phosphatase; Pro 20.0 66 0.0014 33.8 2.0 17 522-538 56-72 (203)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=5e-275 Score=2292.81 Aligned_cols=866 Identities=55% Similarity=0.849 Sum_probs=783.4
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchHHHHHHHHhcCCc
Q 002403 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPF 83 (927)
Q Consensus 4 ~~~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~ 83 (927)
.++|+||||||++|++||||++||+||+.+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++||+||
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPF 117 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPF 117 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002403 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (927)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (927)
+||||.||+++||||.||+||++.|||+|++.+++|++|+++.+.+++.+|+++|||++|.||||||||+||||||||||
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYY 197 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYY 197 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEe
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCc
Q 002403 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (927)
Q Consensus 164 p~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke 243 (927)
|+|+|||.+||||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|+|||+|||||+||+|+||+||||
T Consensus 198 PsSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKE 276 (1018)
T KOG1057|consen 198 PSSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKE 276 (1018)
T ss_pred cCCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCce
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccchhhHHHHHHHHHHHHHHhhCCCCCCCCC
Q 002403 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIP 323 (927)
Q Consensus 244 ~r~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~~~syV~DVNGwSFVK~n~~YYd~cA~iL~~~~l~~~~~~~~~~~~ 323 (927)
+||||.||++||.||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++||+.+.+++..+.+|
T Consensus 277 vRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP 356 (1018)
T KOG1057|consen 277 VRYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIP 356 (1018)
T ss_pred eeceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCccceEEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCccceeecc
Q 002403 324 PILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKS 403 (927)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vvaViRHgDRTPKQK~K~~~~~~~fi~l~~~~~~~~~~~e~klk~ 403 (927)
+++||..+++ .+++.+ +++++++|||||||||||||||||||||++|++++||+||++|+|++ ++|+|||+
T Consensus 357 ~~~p~~~~~~---~~~~v~-----~~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~ 427 (1018)
T KOG1057|consen 357 WSLPGIRNEK---VEPWVP-----TSSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKS 427 (1018)
T ss_pred CCCcccccCC---CCCcee-----cCCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCC
Confidence 8888877654 233444 35679999999999999999999999999999999999999999866 78999999
Q ss_pred hHhHHHHHHHHHhhccccCCCCCCCCcchhhhhhhhhHHHHHHHhhCCCCCCccc-cccchhhhhhhcccccccCCCcce
Q 002403 404 AVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLANLVSGQFID 482 (927)
Q Consensus 404 ~~qLq~vld~~~~~l~~~~~g~~~~~~~~~~e~~~kl~ql~~vLe~~~~fsGinr-vQlKp~~~~~~~~~~~~~~~~~~~ 482 (927)
|+|||+|||++|.++++.+ ++++++.|...||+||++||||||||||||| |||||+.| +..++++++.++...
T Consensus 428 ~~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~-~~~k~se~e~~r~~~ 501 (1018)
T KOG1057|consen 428 ANQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKW-VYVKKSEGELEREPQ 501 (1018)
T ss_pred HHHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeeccc-cCCCCCccccccCcc
Confidence 9999999999999998754 2234445667899999999999999999999 99999999 555666666666688
Q ss_pred eEEEEeccCcch---------hhHHHhhc--c-CCCCCchhhhcccccccceEeecCCchHHHHHHHHHhhhcccCCCCC
Q 002403 483 FLIEQFYQDNGV---------NEIAYWWG--S-HSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLT 550 (927)
Q Consensus 483 ~~LI~KW~~GGe---------e~LG~~fR--Y-p~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~legelt 550 (927)
++||+|| ||| |+|||.|| | +|+|+|||||||||||||||||||||||||||||||||||+|||+||
T Consensus 502 llliLKw--GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelT 579 (1018)
T KOG1057|consen 502 LLLILKW--GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELT 579 (1018)
T ss_pred eeEEeee--CCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhhccCCc
Confidence 9999999 999 99999999 5 47899999999999999999999999999999999999999999999
Q ss_pred cceeeeEecCCCccCCCChhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 002403 551 PILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQ 630 (927)
Q Consensus 551 Pilv~~V~kd~~lLD~~~~a~~~md~vK~kL~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~l~~~~~~~ 630 (927)
|||||||+||+.|||++++|++.|++||++||++|+.|.++ .++|+|+.. + |+|++++.+++++|+.++..
T Consensus 580 piLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-----~~e~~~~~~---~-P~~~~~l~~~ve~vk~~~k~ 650 (1018)
T KOG1057|consen 580 PILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-----TPEFDWPEL---M-PNPSEVLTQVVELVKNPVKV 650 (1018)
T ss_pred HHHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC-----CCccchhhc---C-CcHhHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999864 468899975 3 59999999999999999888
Q ss_pred HHHhhhhhhhhhccCCCCCCCCChhhhhhcCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHhhhcccCccccCCCCc
Q 002403 631 VRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPD 710 (927)
Q Consensus 631 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpd 710 (927)
+++.+.. ..++. .++++.+|.+|+||+|+|+||++||+|||+|||+. +++||||||||
T Consensus 651 ~~e~~~~-------------~~~~~--------~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~DiSKIpd 708 (1018)
T KOG1057|consen 651 CDENFAL-------------IEPLD--------HIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDISKIPD 708 (1018)
T ss_pred HHHhhhc-------------ccccc--------ceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCccccch
Confidence 8864421 11222 47899999999999999999999999999999975 59999999999
Q ss_pred chhhhhhhhccccccCcccHHHHHHHHHHhcceeccccccCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhhc
Q 002403 711 VYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTREEAISVAELKS 790 (927)
Q Consensus 711 iYD~iKYD~LHNr~f~l~~l~ELY~lAK~LaD~V~PqEYGIt~~EKL~IG~~is~pLL~KI~~DL~~~~~~~~~~~~~~~ 790 (927)
||||||||+|||++|.++.+.|||.+||.|||+|+||||||+++|||+||+.+|.|||+||+.||+++++ +..++.++
T Consensus 709 iYD~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki~~dL~~~~e--~~~~et~~ 786 (1018)
T KOG1057|consen 709 IYDTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKILSDLVRTLE--LESAETKN 786 (1018)
T ss_pred HHhhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhhhHhhhcchh--hcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 55667777
Q ss_pred cccccccccccc--ccCCCCCCcccccccccccCCCcCCCCCCCCCCCccccccccCccccCCCCCccceeeEEEeecch
Q 002403 791 SQDQVSKSTKTE--KEDKDYPPKLFIKADDTRRSSTTSDISMDQDDDDDKETQYRLDPKYANVKTPERHVRTRLYFTSES 868 (927)
Q Consensus 791 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~rL~p~ya~V~SP~RhVRTRlYFTSES 868 (927)
+.++.+-+ +.. ..+-...+...+......+-+. ++....+...++.+||.+.+....++.||++||+|||+||
T Consensus 787 ~~~p~~~s-p~~~~r~~lY~~sk~~v~sl~~~ryG~----~~~~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rlyFtres 861 (1018)
T KOG1057|consen 787 RLNPVYLS-PRRHVRTRLYFTSKSHVHSLLLRRYGI----SDVEKLNDGLLTSIRLYEQILNDPTSERHFHTRLYFTRES 861 (1018)
T ss_pred ccCccccC-hhHHHHHHHhhhhHhhhhhhhhhhcCC----chhhhhcccchhceeechhhccCCcccccceeEEEeccch
Confidence 66664211 000 0000111111222222222221 1222334467899999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCccccccccchhhhhhhhhhcCCCCCcccccceEEEeecCCCCC
Q 002403 869 HIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVRI 925 (927)
Q Consensus 869 HIhSLLNvlr~~~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~lyE~~~~~~ 925 (927)
|||||+||+++|.++.+..|..+.++++|...++..+|||||+||||||||++.++.
T Consensus 862 hi~~l~nv~~~~~~dEs~~g~~~~~~~~~l~r~~~~~eld~~~~i~fel~e~t~~S~ 918 (1018)
T KOG1057|consen 862 HIYTLMNVIRYCNLDESDRGLPMKICRNALPRLCDLKELDYLSQIVFELFENTEASG 918 (1018)
T ss_pred hhhhhhhHhhhccccccccCCccccCcccCcccccchhhhhHHHHHHHHhccccccc
Confidence 999999999999999887788999999999999999999999999999999988764
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.1e-30 Score=279.37 Aligned_cols=253 Identities=22% Similarity=0.254 Sum_probs=202.7
Q ss_pred ecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHhcCCcccCCchhh
Q 002403 13 VMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEPQ 91 (927)
Q Consensus 13 am~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iNdl~~q 91 (927)
.++.--++-++..+..+.....-.+++-+..+.+...+...-..+|++|.+-...+.. ..+++.++..|.++||+..+.
T Consensus 35 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~i 114 (318)
T COG0189 35 ILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQSI 114 (318)
T ss_pred EEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHHH
Confidence 3333344555555555544444456777888888888888888999999999999888 788889999999999999999
Q ss_pred hHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChH
Q 002403 92 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 171 (927)
Q Consensus 92 ~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~ 171 (927)
..++||..+++.|+++|||+|.|+++.+. ++....-.+.++.|+|+||++|+ .|-|+
T Consensus 115 ~~~~nK~~~~~~l~~~~ipvP~T~i~~~~------------~~~~~~~~~~~g~pvVlKp~~Gs-----------~G~gV 171 (318)
T COG0189 115 RRCRNKLYTTQLLAKAGIPVPPTLITRDP------------DEAAEFVAEHLGFPVVLKPLDGS-----------GGRGV 171 (318)
T ss_pred HhhhhHHHHHHHHHhcCCCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEeeCCCC-----------Cccce
Confidence 99999999999999999999999999862 12222223344579999999999 67676
Q ss_pred HHHHhhcC-CCcccccccccccccC--cceEEeeccCC-CCceeEEEEECCceeE--EEeecCCCCCCceeecCCCCcee
Q 002403 172 KELFRKVG-NRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVR 245 (927)
Q Consensus 172 ~rLfrki~-n~sS~~~~~~~~~r~~--gsyIyeEFi~~-~G~DIKvytVG~~~vh--Ae~RkSPv~dG~vrrN~~gke~r 245 (927)
- +.+.-. +-.+..+ ..... ..+|.||||++ ++.|+||+++|+.+++ |++|.++ .|+||+|.|+|+..
T Consensus 172 ~-~v~~~d~~l~~~~e----~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~ 244 (318)
T COG0189 172 F-LVEDADPELLSLLE----TLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRA 244 (318)
T ss_pred E-EecCCChhHHHHHH----HHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccc
Confidence 3 444333 2222222 23333 46999999999 6688888888888888 8899886 99999999999999
Q ss_pred eeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccc
Q 002403 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (927)
Q Consensus 246 ~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~~~syV~DVNGwSFVK~n 295 (927)
.++.||++++++|.|||+++|..+||||++++++|.||+|||.-+-.++.
T Consensus 245 e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~sP~~~~~ 294 (318)
T COG0189 245 EPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNVSPTGKGE 294 (318)
T ss_pred cccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeCCCccccc
Confidence 99999999999999999999999999999999999999999986656664
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.94 E-value=4.6e-28 Score=245.05 Aligned_cols=171 Identities=29% Similarity=0.431 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHH
Q 002403 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (927)
Q Consensus 94 l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~ 172 (927)
..||..++++|+++|||+|+|.+++.. + +....+. ++ ++|+|+||+.|. .|-|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~----~~p~ViKp~~g~-----------~G~gV~ 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG----GFPVVIKPLRGS-----------SGRGVF 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH------SSEEEE-SB------------------E
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc----CCCEEEeeCCCC-----------CCCEEE
Confidence 368999999999999999999999862 1 2334443 32 489999999998 566663
Q ss_pred HHHhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeC
Q 002403 173 ELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLL 250 (927)
Q Consensus 173 rLfrki~n~sS~~~~~~~~~-r~~gsyIyeEFi~~-~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~L 250 (927)
+++......+..+ .. ..+..+++|+||+. .|.|+||||||+++++|+.|.++ +|+||+|.+.|+...++.|
T Consensus 57 -~i~~~~~~~~~l~----~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l 129 (190)
T PF08443_consen 57 -LINSPDELESLLD----AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDL 129 (190)
T ss_dssp -EEESHCHHHHHHH---------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE---
T ss_pred -EecCHHHHHHHHH----HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecC
Confidence 4444433333222 22 35678899999999 56999999999999999999997 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccc
Q 002403 251 TPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (927)
Q Consensus 251 t~eEk~iA~k~~~afgq~VcGfDlLRs~~~syV~DVNGwSFVK~n 295 (927)
+++.+++|.++++++|+++|||||+++++++||||||.++-+++.
T Consensus 130 ~~e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 130 PEEIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 999999999999999999999999999999999999999887654
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=233.43 Aligned_cols=249 Identities=20% Similarity=0.267 Sum_probs=182.8
Q ss_pred EEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCC-ceeec--CC-------CcccCCcCeeeccccCC--CchHHHHH
Q 002403 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILE--DP-------IEKWPICDCLIAFYSSG--YPLEKAES 75 (927)
Q Consensus 8 ~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d-~vIL~--e~-------ve~wP~~D~lIsf~s~g--fpl~kai~ 75 (927)
+|||-+.+....| -+.+++-+.+.| ++++++.- +..++ .. ......+|++|++.... +.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4677776655444 345555555545 66655543 22211 11 12345789999976543 22244467
Q ss_pred HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccc
Q 002403 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (927)
Q Consensus 76 y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~G 154 (927)
.++..+|+++|+..+..+++||..++++|+++|||+|++.++... . +..+.++ .+ +.|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~~~~----~~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP--D-------DTSDLIDMVG----GAPLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHHHHhC----CCCEEEEECCC
Confidence 888999999999999999999999999999999999999987531 1 1112221 22 47999999999
Q ss_pred cCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCC
Q 002403 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (927)
Q Consensus 155 edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~-r~~gsyIyeEFi~~-~G~DIKvytVG~~~vhAe~RkSPv~d 232 (927)
. .|.|+. +++...+....++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 7 555653 3322211111111 11 23456999999987 79999999999999999999886 6
Q ss_pred CceeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCcc
Q 002403 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS 290 (927)
Q Consensus 233 G~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~~~syV~DVNGwS 290 (927)
|+|+.|.+.|+..+++.|+++.+++|.++++++|..++|||++.+.+|+||+|||..+
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~~p 265 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASP 265 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEECCC
Confidence 8999999988999999999999999999999999999999999998789999999654
No 5
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.92 E-value=2.9e-24 Score=235.66 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=191.1
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchHHHHHHH-HhcCC
Q 002403 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYA-TLRKP 82 (927)
Q Consensus 4 ~~~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~-~lr~p 82 (927)
.+..+||-|--.||.+|==-..++....+.| ++++--..+- |++.=-.+|++|-....-.=-....+|. +-.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3568999888888888866666777777765 5554443332 4432224699988764432123334443 34567
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCC-------CCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002403 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (927)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~g-------Ip~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (927)
.+||.+.++..+.||..++++|+++| ||+|+++++...... ....... ..++.|+|.||+.|.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~a--------l~~~~~~--~~l~~P~V~KPl~g~ 163 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESS--------IPDAVAL--AGLKFPLVAKPLVAD 163 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHH--------HHHHHHH--hcCCCCEEEeecccC
Confidence 89999999999999999999999999 999999999873100 0001112 236789999999993
Q ss_pred CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCce
Q 002403 156 DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVV 235 (927)
Q Consensus 156 dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~v 235 (927)
. ++.|- ....+-+..+.- ..+..|++||||+-+|.|+||||||+. ++|+.|+| .+.|
T Consensus 164 G--------ss~gh----~m~lv~~~~~L~-------~l~~p~~lQEfVnh~g~d~RVfVvGd~-v~~~~R~S---~~n~ 220 (328)
T PLN02941 164 G--------SAKSH----KMSLAYDQEGLS-------KLEPPLVLQEFVNHGGVLFKVYVVGDY-VKCVRRFS---LPDV 220 (328)
T ss_pred C--------Ccccc----ceEEecCHHHHH-------hcCCcEEEEEecCCCCEEEEEEEECCE-EEEEEecC---Cccc
Confidence 0 11332 223332221111 124469999999999999999999999 59999998 6777
Q ss_pred e---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeC---CCcEEEec
Q 002403 236 M---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVCDV 286 (927)
Q Consensus 236 r---rN~~gk----------------e~-------r~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~---~~syV~DV 286 (927)
+ .|+++| +. ..+...+++-+++|.++++++|+.++||||++.. ++.||+||
T Consensus 221 ~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidV 300 (328)
T PLN02941 221 SEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDI 300 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEe
Confidence 7 888877 32 4455667789999999999999999999999996 36779999
Q ss_pred CCccccccchhhHHHHHHHHHHH
Q 002403 287 NGWSFVKNSYKYYDDAACVLRKM 309 (927)
Q Consensus 287 NGwSFVK~n~~YYd~cA~iL~~~ 309 (927)
|+++-+|+-..|+..-.+.|.++
T Consensus 301 N~fP~~k~~p~~~~~l~~~~~~~ 323 (328)
T PLN02941 301 NYFPGYAKMPGYETVLTDFLLSL 323 (328)
T ss_pred cCCCccccCCchHHHHHHHHHHH
Confidence 99999999999995444444333
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.90 E-value=4.3e-23 Score=215.34 Aligned_cols=249 Identities=20% Similarity=0.239 Sum_probs=178.7
Q ss_pred EEEeecCcccCChhHHHHHHHhhcCCceEEEEeCC---ceeecCCCcccCCcCeeeccccCCCchHHHHHHHHhcCCccc
Q 002403 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD---KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (927)
Q Consensus 9 iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d---~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~i 85 (927)
|||++=.... =++.+.+.+.+.| +++.+|.- .+-++..-..||.+|+++.+...+..-..+.+.++..+.+++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654332 4455556665555 66666653 233333223489999999887444443466778888898899
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 002403 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (927)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (927)
|+..+..+++||+..+++|+++|||+|+|..+... . +....+. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~--~-------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP--E-------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH--H-------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 99999999999999999999999999999988641 0 1122221 23479999999986
Q ss_pred CCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCc
Q 002403 166 SAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (927)
Q Consensus 166 ~~GgG~~rLfrki~n~sS~~~~~~~~~-r~~gsyIyeEFi~~-~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke 243 (927)
.|.|+. +++........+. ..... ...+.||+||||+. .|.|+||+++|+++++++.|.. .+.|+.|.+.|+
T Consensus 135 -~g~gv~-~i~~~~~l~~~~~-~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~ 208 (277)
T TIGR00768 135 -WGRLVS-LARDKQAAETLLE-HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGG 208 (277)
T ss_pred -CCCceE-EEcCHHHHHHHHH-HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhcCC
Confidence 333432 1111100000000 00001 11357999999998 4699999999999999998873 678999999888
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCC-CcEEEecCCcc
Q 002403 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEG-RSYVCDVNGWS 290 (927)
Q Consensus 244 ~r~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~~-~syV~DVNGwS 290 (927)
...++.|+++.+++|.++++++|..+||||++.+.+ ++||+|||..+
T Consensus 209 ~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~p 256 (277)
T TIGR00768 209 KAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNP 256 (277)
T ss_pred eeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCCc
Confidence 888999999999999999999999999999999865 79999999764
No 7
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.88 E-value=2.1e-22 Score=212.15 Aligned_cols=238 Identities=18% Similarity=0.189 Sum_probs=171.2
Q ss_pred hHHHHHHHhhcCCceEEE-EeCCc--eeecCCCcccCCcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHH
Q 002403 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 98 (927)
Q Consensus 22 Pm~~IL~rL~~~~~f~vi-iF~d~--vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~ 98 (927)
..+.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+.........++..+..++|+..+..+++||.
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHH
Confidence 3566666666655 3333 23333 344666679999999998733322222444566788988999999999999999
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhc
Q 002403 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (927)
Q Consensus 99 ~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki 178 (927)
..+++|+++|||+|+|..+... . +..+.+ ..++.|+|+||..|. .|-|+. ++...
T Consensus 90 ~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~----~~~~~P~vvKP~~g~-----------~g~gv~-~v~~~ 144 (280)
T TIGR02144 90 FTYLKLAKAGVPTPRTYLAFDR--E-------AALKLA----EALGYPVVLKPVIGS-----------WGRLVA-LIRDK 144 (280)
T ss_pred HHHHHHHHCCcCCCCeEeeCCH--H-------HHHHHH----HHcCCCEEEEECcCC-----------CcCCEE-EECCH
Confidence 9999999999999999988641 0 111111 124579999999986 333432 11111
Q ss_pred CCCccccccccccc--ccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHH
Q 002403 179 GNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ 256 (927)
Q Consensus 179 ~n~sS~~~~~~~~~--r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~ 256 (927)
.+....+.. .... ..+..+|+||||+..|.|++|+++|+.++|++.|.+ +.|+.|.+.|+...++.++++.++
T Consensus 145 ~~l~~~~~~-~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~~ 219 (280)
T TIGR02144 145 DELESLLEH-KEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVEE 219 (280)
T ss_pred HHHHHHHHH-HHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHHH
Confidence 000000000 0001 124569999999987999999999999999999976 689999998888889999999999
Q ss_pred HHHHHHHHhCCceeEEEEEeeC-CCcEEEecCCcc
Q 002403 257 MAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGWS 290 (927)
Q Consensus 257 iA~k~~~afgq~VcGfDlLRs~-~~syV~DVNGwS 290 (927)
+|.++++++|..++|||++.+. |++||+|||.++
T Consensus 220 ~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~~p 254 (280)
T TIGR02144 220 LAVKAAEAVGGGVVAIDIFESKERGLLVNEVNHVP 254 (280)
T ss_pred HHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeCCc
Confidence 9999999999999999999985 479999999864
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=99.88 E-value=6.8e-23 Score=222.68 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=153.7
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 002403 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (927)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~ 126 (927)
-.||.+|+++.+-...|+. ...+++++.++..++|+..+...+.||+.+++++. ++|+|.++... .
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~--- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A--- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H---
Confidence 4578899999886555542 45788888899999999999999999999999766 89999987641 0
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC-CCcccccccccccc--cCcceEEeec
Q 002403 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG-NRSSEFHPDVRRVR--REGSYIYEEF 203 (927)
Q Consensus 127 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~-n~sS~~~~~~~~~r--~~gsyIyeEF 203 (927)
...+.++-. +|+|+||+.|+ +|.|+.+ .++-+ +..+.++ ... ....||+|+|
T Consensus 146 ----~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~~-i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~ 200 (316)
T PRK05246 146 ----EIRAFRAEH-----GDIILKPLDGM-----------GGAGIFR-VKADDPNLGSILE----TLTEHGREPVMAQRY 200 (316)
T ss_pred ----HHHHHHHHC-----CCEEEEECCCC-----------CccceEE-EeCCCccHHHHHH----HHHHccCCeEEEEec
Confidence 122333312 38999999998 5556542 22111 1011111 122 2458999999
Q ss_pred cCC-CCceeEEEEECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCceeEEEEEeeC
Q 002403 204 MPT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 278 (927)
Q Consensus 204 i~~-~G~DIKvytVG~~~vh-Ae~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~---~afgq~VcGfDlLRs~ 278 (927)
|+. .+.|+||+++|++++| |+.|.++ .|+||+|.|.|+...++.||++++++|.+++ ++.|+.+||||++
T Consensus 201 I~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli--- 275 (316)
T PRK05246 201 LPEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI--- 275 (316)
T ss_pred cccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---
Confidence 998 5789999999999999 9999986 7999999999999999999999999999999 5779999999999
Q ss_pred CCcEEEecCCc
Q 002403 279 GRSYVCDVNGW 289 (927)
Q Consensus 279 ~~syV~DVNGw 289 (927)
+.||+|||..
T Consensus 276 -~~~l~EvN~~ 285 (316)
T PRK05246 276 -GDYLTEINVT 285 (316)
T ss_pred -CCEEEEEeCC
Confidence 4589999954
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.88 E-value=1.2e-22 Score=220.97 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=153.1
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 002403 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (927)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~ 126 (927)
-.|+.+|++|.+-...|.. ...+++++..+..++|+..+.....||...++++. ++|+|++.+.. .
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~--~--- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDK--A--- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCH--H---
Confidence 4588999999886555442 46789999999999999999999999999888763 89999987641 0
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc--cCcceEEeecc
Q 002403 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (927)
Q Consensus 127 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r--~~gsyIyeEFi 204 (927)
+..+.+.-. .|+|+||+.|+ .|.|+.+ ++. ....+..-+.... ....|++|+||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~-v~~---~~~~~~~~~~~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFR-LDP---GDPNFNSILETMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEE-EcC---CCccHHHHHHHHHhccCCcEEEEecc
Confidence 122223212 38999999997 5656542 221 1111110000111 23579999999
Q ss_pred CC-CCceeEEEEECCcee-EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCceeEEEEEeeCC
Q 002403 205 PT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (927)
Q Consensus 205 ~~-~G~DIKvytVG~~~v-hAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~---~afgq~VcGfDlLRs~~ 279 (927)
++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...++.||++++++|.+++ +++|+.+||||+|
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 98 778999999999975 69999886 8999999999999999999999999999998 7789999999999
Q ss_pred CcEEEecCCc
Q 002403 280 RSYVCDVNGW 289 (927)
Q Consensus 280 ~syV~DVNGw 289 (927)
++||+|||..
T Consensus 275 g~~v~EvN~~ 284 (312)
T TIGR01380 275 GGYLTEVNVT 284 (312)
T ss_pred CCEEEEEecC
Confidence 4799999964
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.85 E-value=1.9e-21 Score=214.14 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=149.6
Q ss_pred cccCCcCeeeccccCCCch--HHHHH--------HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccC
Q 002403 52 EKWPICDCLIAFYSSGYPL--EKAES--------YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 121 (927)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl--~kai~--------y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~ 121 (927)
-.|..+|+++.+-.-.+.. ...+. +++..+.+++|+..+...+.||+..+++++ +++|+|++....
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 3578889999876555543 22233 235778999999999999999998876544 789999987641
Q ss_pred CCccccccccccceee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC--CCcccccccccccccCcce
Q 002403 122 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 198 (927)
Q Consensus 122 p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~--n~sS~~~~~~~~~r~~gsy 198 (927)
. +..+.+. .++ .|+|+||++|. .|.|+. ++..-. |..+.++ .+...+.+
T Consensus 151 -~-------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~-~v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 -E-------YIREFLEESPG----DKMILKPLQGS-----------GGQGVF-LIEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred -H-------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeE-EEecCChhhHHHHHH----HHhhCCCE
Confidence 1 1222332 222 36999999997 555653 222111 1111121 22235689
Q ss_pred EEeeccCC-CCceeEEEEECCcee------EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCc
Q 002403 199 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 268 (927)
Q Consensus 199 IyeEFi~~-~G~DIKvytVG~~~v------hAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~af---gq~ 268 (927)
|+||||++ .+.|+||++||++++ ||+.|.++ .|+||+|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999998 678999999999999 99999885 7999999999999999999999999999999988 999
Q ss_pred eeEEEEEeeCCCcEEEecCC
Q 002403 269 VCGFDLLRCEGRSYVCDVNG 288 (927)
Q Consensus 269 VcGfDlLRs~~~syV~DVNG 288 (927)
+||||++ +.+|+|||-
T Consensus 281 ~~gVDli----~~~l~EIN~ 296 (338)
T PRK12458 281 FVGLDIV----GDKLVEVNV 296 (338)
T ss_pred EEeEEEE----CCEEEEEeC
Confidence 9999999 568999993
No 11
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.76 E-value=1.8e-17 Score=176.16 Aligned_cols=139 Identities=24% Similarity=0.363 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcccCccccCCCCcchhhhhhhhccccccCcccHHHHHHHHHHhcceeccccccCCchh
Q 002403 676 CGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQ 755 (927)
Q Consensus 676 c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdiYD~iKYD~LHNr~f~l~~l~ELY~lAK~LaD~V~PqEYGIt~~E 755 (927)
|.|++...+...|..++..+|.. ...+.+.+|++|+.+++|++++..+ ..+.++|.. ||.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~- 259 (347)
T PF00328_consen 197 IPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEYL--EDLKEYYQY------------YGYSDE- 259 (347)
T ss_dssp STTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHHH--HHHHHHHHH------------CSTTHH-
T ss_pred cCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHhh--hhHHHHhhc------------ccCCch-
Confidence 56766677889999999999874 2689999999999999999998773 335556665 888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhhcccccccccccccccCCCCCCcccccccccccCCCcCCCCCCCCCC
Q 002403 756 KLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDDD 835 (927)
Q Consensus 756 KL~IG~~is~pLL~KI~~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 835 (927)
++...+.|||+.|+..+...-..
T Consensus 260 ---~~~~~~~~ll~~ll~~l~~~~~~------------------------------------------------------ 282 (347)
T PF00328_consen 260 ---IARLQGGPLLNELLRRLKQAING------------------------------------------------------ 282 (347)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCHSS------------------------------------------------------
T ss_pred ---HHHHHHhHHHHHHHHHHhhcccc------------------------------------------------------
Confidence 45566678888888887753200
Q ss_pred CccccccccCccccCCCCCccceeeEEEeecchhHHHHHHHHHhcCCccccccccchhhhhhhhhhcCCCCCcccccceE
Q 002403 836 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 915 (927)
Q Consensus 836 ~~~e~~~rL~p~ya~V~SP~RhVRTRlYFTSESHIhSLLNvlr~~~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf 915 (927)
.++.+..|-.+||+..+.|..||.+| |+.....+. .. .--.|-|+|+|
T Consensus 283 ----------------~~~~~~~k~~~~s~HD~tl~~ll~~L---gl~~~~~~~-----------~~--~~pp~as~l~f 330 (347)
T PF00328_consen 283 ----------------NSPGRPPKLVLYSGHDTTLMPLLSAL---GLDNYSPPY-----------QS--YWPPYASNLVF 330 (347)
T ss_dssp ----------------TCSCSSCSEEEEEE-HHHHHHHHHHT---TCTTTSTTT-----------HS--SCSSTT-EEEE
T ss_pred ----------------ccccccceEEEEecCHHHHHHHHHHh---CCCccCccc-----------cC--CCCCccceeEE
Confidence 00112357899999999999999998 455432110 11 23468899999
Q ss_pred EEeec
Q 002403 916 RMFEN 920 (927)
Q Consensus 916 ~lyE~ 920 (927)
|||++
T Consensus 331 El~~~ 335 (347)
T PF00328_consen 331 ELYRD 335 (347)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 12
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.76 E-value=2.7e-18 Score=187.99 Aligned_cols=185 Identities=17% Similarity=0.126 Sum_probs=134.4
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccccCcceeEE
Q 002403 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (927)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IY 162 (927)
..|+=+-..++.||..+.++|.++|||+|.|..+.... ...++..+ +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~--------~~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQ--------AEVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCch--------hhHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 46777888899999999999999999999998877521 01122222 233 247999999999
Q ss_pred eccCCCChHHHHHhhcCCCc------cccccc-cc--------cc-ccC--cceEEeeccCCC-----------CceeEE
Q 002403 163 YPSSAGGGMKELFRKVGNRS------SEFHPD-VR--------RV-RRE--GSYIYEEFMPTG-----------GTDVKV 213 (927)
Q Consensus 163 yp~~~GgG~~rLfrki~n~s------S~~~~~-~~--------~~-r~~--gsyIyeEFi~~~-----------G~DIKv 213 (927)
+|-|+. +++...+.. ..+.++ +. .+ ... ..+.|+||+..+ +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 888874 444322111 010000 00 00 112 224445665332 389999
Q ss_pred EEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 002403 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (927)
Q Consensus 214 ytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt--------------------------------~eEk~iA~k~ 261 (927)
+|||++.++||.|.+. -.|.|+.|.|.|+...++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999662 357899999999999999886 6788999999
Q ss_pred HHHhCCceeEEEEEee-CCCcEEEecCCcccc
Q 002403 262 CIAFRQAVCGFDLLRC-EGRSYVCDVNGWSFV 292 (927)
Q Consensus 262 ~~afgq~VcGfDlLRs-~~~syV~DVNGwSFV 292 (927)
++++|+.++|+|++.+ +++++|+|||+-+-+
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999986 689999999976544
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.73 E-value=5.8e-18 Score=197.26 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=134.4
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002403 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (927)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (927)
.+|+..+..++.||..+.++|+++|||+|++.++... + +..++++ .++ |+|+||++|+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~----~~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLA----EHG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHH----HhC-CEEEEECCCC--------
Confidence 6788999999999999999999999999999998741 0 1112222 233 7999999997
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc------
Q 002403 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (927)
Q Consensus 164 p~~~GgG~~rLfrki~n~sS~~~~~~~~-~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~--dG~------ 234 (927)
+|.|+. + .+.+... +..-+.. .+....+|+|+|++ |.|+||+|||+++++|+.|.+|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~e-L~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDD-LEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHH-HHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 666763 2 1211111 1110001 12345799999994 999999999999999999998843 442
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 002403 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (927)
Q Consensus 235 ------------------------------------------------vrrN~~gke~r~~v--~Lt~eEk~iA~k~~~a 264 (927)
.++|+|-|+....| .+.|+.+++|.+||++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 25788888887777 7999999999999999
Q ss_pred hCCceeEEEEEeeC-CCc--EEEecCCcccc
Q 002403 265 FRQAVCGFDLLRCE-GRS--YVCDVNGWSFV 292 (927)
Q Consensus 265 fgq~VcGfDlLRs~-~~s--yV~DVNGwSFV 292 (927)
+|+.||||||+... .+| +|||||--+-.
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl 524 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGL 524 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccc
Confidence 99999999999864 455 79999965544
No 14
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.71 E-value=5.3e-16 Score=166.14 Aligned_cols=247 Identities=16% Similarity=0.175 Sum_probs=165.5
Q ss_pred eeEEEEee------cCcccCChhHHHHHHHhhcCCceEEEEeCC-ceeecCCCcccCCcCeeeccccCCCchH-HHHHHH
Q 002403 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYA 77 (927)
Q Consensus 6 ~~~iGVCa------m~~Ka~SkPm~~IL~rL~~~~~f~viiF~d-~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~ 77 (927)
+++|+||+ -+....|. +.|++-|.+.| +++++... +-+++ +-.+..+|+++..+...+..+ .+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~--~~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAA--QLKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHH--HhccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 45544443 66777776644 66666532 22222 123457899998865433332 234455
Q ss_pred HhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 002403 78 TLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (927)
Q Consensus 78 ~lr~p~~iN-dl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (927)
+..+...+| +..+..++.||....++|+++|||+|++..+... ++.... -..++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~~~~~-~~~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTRE------------EDLLAA-IDKLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCc------------chHHHH-HhhcCCCEEEeeCCCC-
Confidence 677766665 4789999999999999999999999999998762 111111 1124589999999985
Q ss_pred cceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--
Q 002403 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (927)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG-- 233 (927)
.|.|+. ++.|.....+ -+. .......+|+||||+ |.++.|.++|+.+.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 333432 1221111100 000 012256799999997 8999999999999888887763 33
Q ss_pred ceeecCCCCceeee--eeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeC-CCcEEEecCCcc
Q 002403 234 VVMRNPDGKEVRYP--VLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (927)
Q Consensus 234 ~vrrN~~gke~r~~--v~Lt~eE----k~iA~k~~~afgq-~VcGfDlLRs~-~~syV~DVNGwS 290 (927)
.++.+.+.|+..+. ..+++++ +++|.++++++|. .+|+||++.++ |++||+|||..+
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p 270 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQP 270 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCC
Confidence 46777776655433 3577654 6789999999998 48999999997 669999999653
No 15
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.68 E-value=6e-17 Score=194.29 Aligned_cols=181 Identities=21% Similarity=0.328 Sum_probs=136.6
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002403 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (927)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (927)
.-++..+..++.||..+.++|+++|||+|++.++... ++.... -..+++|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~------------~~a~~~-a~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA------------EDAWEA-AEEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH------------HHHHHH-HHHcCCCEEEEECCCC--------
Confidence 5778888999999999999999999999999987651 222221 1235689999999997
Q ss_pred ccCCCChHHHH-HhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc------
Q 002403 164 PSSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (927)
Q Consensus 164 p~~~GgG~~rL-frki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~--dG~------ 234 (927)
+|.|+. + .+....-...++. ..+....+|+||||+ |.|+||+|||+++++|+.|.+|-+ ||.
T Consensus 261 ---~G~GV~-~~v~~~~el~~a~~~---a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-VNITTREEIEAAYAV---ASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-EecCCHHHHHHHHHH---HHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 555653 2 1111100011110 112346799999996 999999999999999999998854 332
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 002403 235 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 261 (927)
Q Consensus 235 -------------------------------------------------vr--rN~~gke~r~~v~--Lt~eEk~iA~k~ 261 (927)
+| .|.+.|+....+. ++|+.+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 4888888888885 999999999999
Q ss_pred HHHhCCceeEEEEEeeC-------CCcEEEecCCcccccc
Q 002403 262 CIAFRQAVCGFDLLRCE-------GRSYVCDVNGWSFVKN 294 (927)
Q Consensus 262 ~~afgq~VcGfDlLRs~-------~~syV~DVNGwSFVK~ 294 (927)
|+++|+.||||||+... .+..|||||.-+-++.
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~ 451 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRM 451 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhh
Confidence 99999999999999853 4678999998877664
No 16
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.66 E-value=1.1e-16 Score=195.16 Aligned_cols=176 Identities=22% Similarity=0.307 Sum_probs=130.4
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEec
Q 002403 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (927)
Q Consensus 85 iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp 164 (927)
.++..+..+++||..+.++|+++|||+|++.++... ++.... -..+++|+|+||.+|.
T Consensus 202 ~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~------------~ea~~~-~~~ig~PvVVKP~~g~--------- 259 (864)
T TIGR02068 202 RTSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSA------------EDAWEA-AQDLGYPVVIKPYDGN--------- 259 (864)
T ss_pred CCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHH-HHHcCCCEEEEECCCC---------
Confidence 356778899999999999999999999999988651 222221 1234589999999997
Q ss_pred cCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC----------
Q 002403 165 SSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG---------- 233 (927)
Q Consensus 165 ~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG---------- 233 (927)
+|.|+. + .+.+... +..-.. .......+|+|+|++ |.|+||+|||+++++|+.|.+|-|-|
T Consensus 260 --~G~GV~-l--~v~s~~e-l~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi 331 (864)
T TIGR02068 260 --HGRGVT-I--NILTRDE-IESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELI 331 (864)
T ss_pred --CccCEE-E--EeCCHHH-HHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHH
Confidence 455553 2 1111111 000000 112346799999995 89999999999999999999997655
Q ss_pred -------------------------------------------------ceeecCCCCceeeee--eCCHHHHHHHHHHH
Q 002403 234 -------------------------------------------------VVMRNPDGKEVRYPV--LLTPNEKQMAREVC 262 (927)
Q Consensus 234 -------------------------------------------------~vrrN~~gke~r~~v--~Lt~eEk~iA~k~~ 262 (927)
..++|.+.|+...-+ .++|+.+++|.+||
T Consensus 332 ~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa 411 (864)
T TIGR02068 332 EQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAA 411 (864)
T ss_pred HHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHH
Confidence 225678888888777 99999999999999
Q ss_pred HHhCCceeEEEEEee-------CCCcEEEecCCcc
Q 002403 263 IAFRQAVCGFDLLRC-------EGRSYVCDVNGWS 290 (927)
Q Consensus 263 ~afgq~VcGfDlLRs-------~~~syV~DVNGwS 290 (927)
+++|+.||||||+-. ..+..|||||+-+
T Consensus 412 ~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p 446 (864)
T TIGR02068 412 KIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAP 446 (864)
T ss_pred HHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCc
Confidence 999999999999753 2334799999654
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.61 E-value=1.4e-15 Score=183.00 Aligned_cols=184 Identities=19% Similarity=0.186 Sum_probs=128.5
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 002403 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (927)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (927)
...|.+.+-.+++||..+.++|+++|||+|++.++... . +..+++. ...+.|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~--e-------~a~~~~~---~~~g~PvVVKP~~g~------- 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL--E-------EALADYS---LFADKAIVVKPKSTN------- 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH--H-------HHHHHHH---HhcCCCEEEEECCCC-------
Confidence 46677777888999999999999999999999887641 0 1111221 112479999999998
Q ss_pred eccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc--e---
Q 002403 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--V--- 235 (927)
Q Consensus 163 yp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~--dG~--v--- 235 (927)
.|.|+. +++.+.+.......-....+.+..+|+||||+ |.|+||+|||+++++|+.|.+|-| ||. +
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 777774 55544433322221000123456799999995 999999999999999999999866 443 1
Q ss_pred ----------------------------------------------------eecCCCCceeee--eeCCHHHHHHHHHH
Q 002403 236 ----------------------------------------------------MRNPDGKEVRYP--VLLTPNEKQMAREV 261 (927)
Q Consensus 236 ----------------------------------------------------rrN~~gke~r~~--v~Lt~eEk~iA~k~ 261 (927)
..|.+-|+...- =.+.|+-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 012222222111 14667779999999
Q ss_pred HHHhCCceeEEEEEeeC-------C--CcEEEecCCcccc
Q 002403 262 CIAFRQAVCGFDLLRCE-------G--RSYVCDVNGWSFV 292 (927)
Q Consensus 262 ~~afgq~VcGfDlLRs~-------~--~syV~DVNGwSFV 292 (927)
|+++|+.||||||+-.. . +..|||||+-+-.
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l 728 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAM 728 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCCch
Confidence 99999999999999653 1 5579999976543
No 18
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.53 E-value=1.5e-13 Score=147.93 Aligned_cols=242 Identities=16% Similarity=0.196 Sum_probs=154.6
Q ss_pred ChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHhcCCccc-CCchhhhHhhhH
Q 002403 20 SAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDR 97 (927)
Q Consensus 20 SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR 97 (927)
-+--++|++-|.+.| ++++.++..--+-..+...+.+|+++....-.+-. ..+-+.++..+.+.+ ++..+..+++||
T Consensus 18 l~s~~~i~~al~~~g-~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK 96 (299)
T PRK14571 18 LRSGERVKKALEKLG-YEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDK 96 (299)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCH
Confidence 344567777777654 66666643211111122234678888775433322 345667778886665 568999999999
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhh
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrk 177 (927)
..+.++|+ +|||+|++..+... . ....++.|+|+||.+|. .|-|+. +
T Consensus 97 ~~~k~~l~-~~ip~p~~~~~~~~------------~-----~~~~l~~P~vvKP~~g~-----------~s~Gv~----~ 143 (299)
T PRK14571 97 LLTYRFLK-GTVEIPDFVEIKEF------------M-----KTSPLGYPCVVKPRREG-----------SSIGVF----I 143 (299)
T ss_pred HHHHHHHh-cCCCCCCEEEEech------------h-----hhhhcCCCEEEecCCCC-----------CcCCEE----E
Confidence 99999998 58999999887531 0 01235689999999985 333432 1
Q ss_pred cCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeecCCCCCC--ceeecCCCCceee--eee
Q 002403 178 VGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVRY--PVL 249 (927)
Q Consensus 178 i~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~---~vhAe~RkSPv~dG--~vrrN~~gke~r~--~v~ 249 (927)
+.|...... -+. ..+....+|+||||+ |+++.|-++|.. .+.+....-| .++ .+..+.++++..+ |..
T Consensus 144 v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~-~~~~~~~~~k~~~g~~~~~~p~~ 219 (299)
T PRK14571 144 CESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP-KRRFYDYVAKYTKGETEFILPAP 219 (299)
T ss_pred ECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec-CCCccccccccCCCCeeEEeCCC
Confidence 221111100 000 112345799999996 899999999853 3555544333 122 2334444555443 556
Q ss_pred CCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecCCccccccchhhH
Q 002403 250 LTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYY 299 (927)
Q Consensus 250 Lt~eE----k~iA~k~~~afgq-~VcGfDlLRs~~~syV~DVNGwSFVK~n~~YY 299 (927)
|+++. +++|.++++++|. .+|+||++-.++++||+|||.-+-......+.
T Consensus 220 l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 220 LNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCCCCCCccCHHH
Confidence 87764 5689999999995 79999999888899999999887666554444
No 19
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.51 E-value=2.6e-13 Score=145.92 Aligned_cols=209 Identities=15% Similarity=0.178 Sum_probs=131.6
Q ss_pred CCcCeeeccccCCCch-HHHHHHHHhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl-~kai~y~~lr~p~~iN-dl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++.....+.. ..+-+.++..+.+.+| +..+..+++||..+.++|.++|||+|++..+.++. . +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~-~-------~~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-A-------SA 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEeccc-c-------cc
Confidence 3579988854221122 3556677888866666 58899999999999999999999999999987321 0 00
Q ss_pred cce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCce
Q 002403 133 EDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTD 210 (927)
Q Consensus 133 ~d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~D 210 (927)
.+. +.--...++.|+|+||..|. .|.|+. ++.|... +..-+. ....+..+|+||||+ |++
T Consensus 134 ~~~~~~~~~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~e-l~~~~~~~~~~~~~~lvEe~i~--G~e 195 (315)
T TIGR01205 134 DELECEQVAEPLGFPVIVKPAREG-----------SSVGVS----KVKSEEE-LQAALDEAFEYDEEVLVEQFIK--GRE 195 (315)
T ss_pred hhhhHHHHHHhcCCCEEEEeCCCC-----------CccCEE----EECCHHH-HHHHHHHHHhcCCcEEEEcCCC--CEE
Confidence 110 00000124689999999975 233321 1211111 100000 112356799999995 999
Q ss_pred eEEEEEC-CceeEEEeecCCCC-CCceeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCC-C
Q 002403 211 VKVYTVG-PEYAHAEARKSPVV-DGVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEG-R 280 (927)
Q Consensus 211 IKvytVG-~~~vhAe~RkSPv~-dG~vrrN~~gke~r--~~v~Lt~eE----k~iA~k~~~afgq-~VcGfDlLRs~~-~ 280 (927)
+.|.++| +.....+.+-.... --.+..+.+.++.. .|..++++. +++|.++++++|. .+|+||++.+.+ +
T Consensus 196 ~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~ 275 (315)
T TIGR01205 196 LEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGE 275 (315)
T ss_pred EEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCC
Confidence 9999999 54333443322100 00123343434333 344577654 7899999999998 699999999864 6
Q ss_pred cEEEecCCc
Q 002403 281 SYVCDVNGW 289 (927)
Q Consensus 281 syV~DVNGw 289 (927)
+||+|||.-
T Consensus 276 ~~viEvN~~ 284 (315)
T TIGR01205 276 IYLNEINTI 284 (315)
T ss_pred EEEEEeeCC
Confidence 999999954
No 20
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.51 E-value=3.9e-14 Score=169.42 Aligned_cols=179 Identities=22% Similarity=0.298 Sum_probs=121.5
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee-eecCeeccCcEEEeeccccCcceeEE
Q 002403 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIY 162 (927)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i-~v~g~~~~kPfVeKpv~GedHni~IY 162 (927)
...+..+-.++.||..+-++|+++|||+|...++.... +....+ .+. ++|+|+||++|.
T Consensus 463 s~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~----g~PVVVKP~~g~------- 522 (737)
T TIGR01435 463 SKDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFE----NKAIVVKPKSTN------- 522 (737)
T ss_pred CCccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhc----CCCEEEeeCCCC-------
Confidence 45566677899999999999999999999998876520 011111 122 479999999998
Q ss_pred eccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC--CCc--ee-
Q 002403 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--VM- 236 (927)
Q Consensus 163 yp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~--dG~--vr- 236 (927)
+|-|+. +++...+. .++..-+. ..+.+..+|+||||+ |+|+||+|+|+++++|+.|.+|-| ||+ ++
T Consensus 523 ----~G~GVs-i~~~~~~~-eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~e 594 (737)
T TIGR01435 523 ----YGLGIT-IFKNGFTL-EDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRE 594 (737)
T ss_pred ----CcCCeE-EecCcCCH-HHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHH
Confidence 666663 33322211 11111111 234566799999996 999999999999999999998866 553 11
Q ss_pred ----ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHH
Q 002403 237 ----RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREV 261 (927)
Q Consensus 237 ----rN~---~gke~r-----------------------------------------------~~v-~Lt~eEk~iA~k~ 261 (927)
.|. .|++.+ -.+ .+.|+-+++|.+|
T Consensus 595 LI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~a 674 (737)
T TIGR01435 595 LVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRI 674 (737)
T ss_pred HHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHH
Confidence 121 122211 112 4456779999999
Q ss_pred HHHhCCceeEEEEEeeC---------CCcEEEecCCcc
Q 002403 262 CIAFRQAVCGFDLLRCE---------GRSYVCDVNGWS 290 (927)
Q Consensus 262 ~~afgq~VcGfDlLRs~---------~~syV~DVNGwS 290 (927)
|+|+|+.||||||+-.. .+.-|||||--+
T Consensus 675 a~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P 712 (737)
T TIGR01435 675 ATAVGAAICGVDLIIPDETIPDTDKHAIWGVIEANFNP 712 (737)
T ss_pred HHhcCCCEEEEEEEecCCCCCccccccceEEEEEcCCc
Confidence 99999999999999531 113389999543
No 21
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.45 E-value=5.9e-14 Score=142.48 Aligned_cols=145 Identities=22% Similarity=0.329 Sum_probs=91.5
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 002403 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (927)
Q Consensus 111 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~ 190 (927)
+|.|++.... .+..+.++-.| . +|+||+.|- .|-|+-++-+.-.|.++.++
T Consensus 12 ~P~T~vs~~~---------~~i~~f~~~~~----~-~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---- 62 (173)
T PF02955_consen 12 IPPTLVSRDK---------EEIRAFIEEHG----D-IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---- 62 (173)
T ss_dssp S--EEEES-H---------HHHHHHHHHHS----S-EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----
T ss_pred CcCEEEECCH---------HHHHHHHHHCC----C-EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----
Confidence 4788877642 12334444333 2 999999997 55566433333233333333
Q ss_pred ccccC--cceEEeeccCC-CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 002403 191 RVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 265 (927)
Q Consensus 191 ~~r~~--gsyIyeEFi~~-~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~af-- 265 (927)
..-.+ ..++.|+|+++ ..-|.|+++++++++||..|.++ .|+||.|.+-|+...++.||++|++||.+++..+
T Consensus 63 ~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 63 TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRE 140 (173)
T ss_dssp HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhh
Confidence 22233 45999999998 55599999999999999999996 9999999999999999999999999999999887
Q ss_pred -CCceeEEEEEeeCCCcEEEecCCcc
Q 002403 266 -RQAVCGFDLLRCEGRSYVCDVNGWS 290 (927)
Q Consensus 266 -gq~VcGfDlLRs~~~syV~DVNGwS 290 (927)
|+..+|+|+| |.|+.|||=.|
T Consensus 141 ~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 141 DGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp TT--EEEEEEE----TTEEEEEE-SS
T ss_pred cCcEEEEEecc----ccceEEEeccC
Confidence 7899999999 56999999655
No 22
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.42 E-value=2.4e-12 Score=139.29 Aligned_cols=245 Identities=14% Similarity=0.149 Sum_probs=150.7
Q ss_pred eeEEEEeec----CcccCChhHHHHHHHhhcCCceEEEEeCCc--eeecCCCcccCCcCeeec-cccCCCchHHHHHHHH
Q 002403 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGDK--VILEDPIEKWPICDCLIA-FYSSGYPLEKAESYAT 78 (927)
Q Consensus 6 ~~~iGVCam----~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~--vIL~e~ve~wP~~D~lIs-f~s~gfpl~kai~y~~ 78 (927)
+++|+|-+= ++-.--+-.++|++-|.+. .++++.++-. -++..=.+. .+|+++. +|+..--...+...++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHH
Confidence 456666542 2222335667888888774 4787777421 112111111 3565444 3433222245566777
Q ss_pred hcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 002403 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (927)
Q Consensus 79 lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (927)
+.+ ||+-++..+..+++||..+-++|+++|||||++.++... ... -..++.|+|+||.+|.
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~------------~~~----~~~~~~P~vVKP~~gg-- 141 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDK------------LVA----EDEISFPVAVKPSSGG-- 141 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchh------------hhh----HhhcCCCEEEEeCCCC--
Confidence 888 566788899999999999999999999999999877531 001 1235689999999975
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceee
Q 002403 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR 237 (927)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrr 237 (927)
.|-|+. ++.|... +..-+........+|+||||+ |+++.|.++|+....+....++ .+.+..
T Consensus 142 ---------ss~Gv~----~v~~~~e-L~~a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~ 203 (296)
T PRK14569 142 ---------SSIATF----KVKSIQE-LKHAYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDY 203 (296)
T ss_pred ---------CCcCeE----EcCCHHH-HHHHHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCCh
Confidence 233331 1211111 100000111224689999995 8999999999876555544332 222211
Q ss_pred -cCCCCceee--eeeCC----HHHHHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEecCCc
Q 002403 238 -NPDGKEVRY--PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGW 289 (927)
Q Consensus 238 -N~~gke~r~--~v~Lt----~eEk~iA~k~~~afgq-~VcGfDlLRs-~~~syV~DVNGw 289 (927)
+.+.+...+ |..++ .+-+++|.++++++|. .+|.||++-. +|.+||+|||.-
T Consensus 204 ~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~ 264 (296)
T PRK14569 204 ESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSS 264 (296)
T ss_pred hhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC
Confidence 222333333 44444 3567789999999995 6999999886 466999999944
No 23
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.35 E-value=8.3e-12 Score=137.16 Aligned_cols=206 Identities=18% Similarity=0.237 Sum_probs=128.8
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++-..-.+..+ .+..+++..+ ||+=++..+..+++||..+.++|.++|||+|++..+.... +..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---------WEE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---------cch
Confidence 6899888754333332 3556777777 4556778999999999999999999999999999887521 000
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIK 212 (927)
..+..-...++.|+|+||.+|. .+.|+. + +.+. .++..-+. ..+.+..+|+|+||+ |.++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~-~---v~~~-~el~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS-K---VKNE-EELAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE-E---ECCH-HHHHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0111001235689999999975 233332 1 1111 11110000 123457899999998 89999
Q ss_pred EEEECCc-eeEEEeecCCCCCCcee--ecC-CC-CceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeC-CCc
Q 002403 213 VYTVGPE-YAHAEARKSPVVDGVVM--RNP-DG-KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCE-GRS 281 (927)
Q Consensus 213 vytVG~~-~vhAe~RkSPv~dG~vr--rN~-~g-ke~r~~v~Lt~e----Ek~iA~k~~~afgq-~VcGfDlLRs~-~~s 281 (927)
|-++|.+ .+.....--+ -++-+. ..- .| .+...|..|+++ -+++|.++++++|. .+|.+|++-.. |.+
T Consensus 214 v~vl~~~~~~~~~~ei~~-~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVK-PDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEec-CCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999952 1111111111 011110 111 12 233456677765 46899999999997 79999999875 458
Q ss_pred EEEecCCc
Q 002403 282 YVCDVNGW 289 (927)
Q Consensus 282 yV~DVNGw 289 (927)
||+|||--
T Consensus 293 ~vlEiNt~ 300 (333)
T PRK01966 293 YLNEINTM 300 (333)
T ss_pred EEEEeeCC
Confidence 99999944
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.35 E-value=7.8e-12 Score=135.02 Aligned_cols=194 Identities=22% Similarity=0.271 Sum_probs=128.6
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++|+.+....++ .+..+.++..+ +++.|+.++..+++||....++|.++|||+|++..+... +
T Consensus 69 ~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~ 136 (326)
T PRK12767 69 KIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL------------E 136 (326)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCH------------H
Confidence 357888765444433 33334444555 467899999999999999999999999999999877541 1
Q ss_pred ceee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+... +.-..++.|+|+||.+|. .|.|+. +++ +. .++.. .+.....+|+||||.-..-.+-
T Consensus 137 ~~~~~~~~~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~-~el~~---~~~~~~~~lvqeyi~G~e~~v~ 197 (326)
T PRK12767 137 DFKAALAKGELQFPLFVKPRDGS-----------ASIGVF-KVN---DK-EELEF---LLEYVPNLIIQEFIEGQEYTVD 197 (326)
T ss_pred HHHhhhhcccCCCCEEEEeCCCC-----------CccCeE-EeC---CH-HHHHH---HHHhCCCeEEEeccCCceEEEE
Confidence 2111 011234689999999886 333432 111 11 11110 1222348999999944455666
Q ss_pred EEEE-CCceeEEEeecCCCCCCceeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecCC
Q 002403 213 VYTV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (927)
Q Consensus 213 vytV-G~~~vhAe~RkSPv~dG~vrrN~~gke-~r~~v~Lt~eEk~iA~k~~~afgq-~VcGfDlLRs~~~syV~DVNG 288 (927)
+|+. ++++++...++.- ...+|. ....+...++-+++|.++++++|. .+++||++...|++||+|+|.
T Consensus 198 ~~~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 198 VLCDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEEcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 6776 6777776666531 111222 222334568889999999999999 599999999999999999995
No 25
>PRK06849 hypothetical protein; Provisional
Probab=99.34 E-value=9.5e-12 Score=138.71 Aligned_cols=194 Identities=16% Similarity=0.240 Sum_probs=129.9
Q ss_pred cCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002403 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (927)
+|++||..+..+.+.++.+.++..-.+..++.+....++||...++.++++|||+|+|..+... ++..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~------------~~l~ 144 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP------------EAIR 144 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 6888888776655555555444444567899999999999999999999999999999998752 1111
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 002403 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (927)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytV 216 (927)
.+.-...++|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++.
T Consensus 145 ~~~~~~~~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 145 NFMFKTPHTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred HHhhcCCCCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 1111112589999999986 3444431 2111 1111 00 11234569999999965556778888
Q ss_pred CCceeEEEeecCCCCCCceeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEee-CCCcEEEecC
Q 002403 217 GPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (927)
Q Consensus 217 G~~~vhAe~RkSPv~dG~vrrN~~gk-e~r~~v~Lt~eEk~iA~k~~~afgq~-VcGfDlLRs-~~~syV~DVN 287 (927)
++++++...... ....+ ++ .+.+.....++-.++|.++++++|.. +++||++.+ +|..|++|||
T Consensus 207 ~G~v~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCAG--SGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred CCEEEEEEEeec-----cccCC--CCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 888765444321 11111 11 12222234678899999999999977 999999998 5679999999
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.32 E-value=1.1e-11 Score=136.83 Aligned_cols=197 Identities=19% Similarity=0.257 Sum_probs=125.1
Q ss_pred cCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
+|++++-+.. ++. .+++.++..+.++.++..+..+++||....++| +++|||+|++..+... ++.
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~------------~~~ 128 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSL------------DEL 128 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 7887765543 343 345677777877789999999999999999975 8999999999888751 222
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccc-cccccCcceEEeeccCCCCceeEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVRREGSYIYEEFMPTGGTDVKVY 214 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~-~~~r~~gsyIyeEFi~~~G~DIKvy 214 (927)
... ...++.|+|+||++|. .|.|+. +.+....-...++--. .....++.+|+||||+ .+..+-|.
T Consensus 129 ~~~-~~~~g~P~VvKP~~g~-----------~s~gv~-~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 129 REA-VEKIGYPCVVKPVMSS-----------SGKGQS-VVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HHH-HHHcCCCEEEEECCCc-----------CCCCeE-EECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEE
Confidence 111 1135689999999986 233332 2211110000000000 0001245799999996 35788887
Q ss_pred EE---CCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEec
Q 002403 215 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 286 (927)
Q Consensus 215 tV---G~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eE----k~iA~k~~~afgq-~VcGfDlLRs~~~syV~DV 286 (927)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 22222222212334577788764 5788999999997 7889999999899999999
Q ss_pred C
Q 002403 287 N 287 (927)
Q Consensus 287 N 287 (927)
|
T Consensus 269 n 269 (380)
T TIGR01142 269 S 269 (380)
T ss_pred e
Confidence 9
No 27
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.29 E-value=5.3e-11 Score=133.10 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=130.5
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcCCcccCCc-hhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~iNdl-~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++...-.+-.+ .+..++++.+.+.++.- .+..+++||..+.++|+++|||||++..+.+... ..+.+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 4787776654333333 67889999997777766 5999999999999999999999999887765210 01111
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+...---..++.|+|+||..+. ..+|.+-.... .|-+.+.. ..+.+..+|+||||. |+++.
T Consensus 161 ~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al~~----------a~~~~~~vlVEefI~--GrEi~ 222 (364)
T PRK14570 161 GIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCIEE----------AFKYDLTVVIEKFIE--AREIE 222 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHHHH----------HHhCCCCEEEECCcC--CEEEE
Confidence 1111001235689999999953 33333221111 11111110 123355689999997 99999
Q ss_pred EEEECCceeEE---EeecCCCCCCcee-----ecCC-CCce--eeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEe
Q 002403 213 VYTVGPEYAHA---EARKSPVVDGVVM-----RNPD-GKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLR 276 (927)
Q Consensus 213 vytVG~~~vhA---e~RkSPv~dG~vr-----rN~~-gke~--r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLR 276 (927)
|-|+|+....+ ..... .++.|- ...+ |+.. .-|..|++ +-+++|.+|++++|. .+|.||++-
T Consensus 223 v~Vlg~~~~~v~~~~Ei~~--~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 223 CSVIGNEQIKIFTPGEIVV--QDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred EEEECCCCceEeeeEEEEe--CCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 99999753221 11110 022121 1112 2222 22556665 677899999999999 699999988
Q ss_pred e--CCCcEEEecCCc
Q 002403 277 C--EGRSYVCDVNGW 289 (927)
Q Consensus 277 s--~~~syV~DVNGw 289 (927)
+ +|.+||+|||--
T Consensus 301 ~~~~g~~yvlEiNt~ 315 (364)
T PRK14570 301 EKDTGLIYLNEINTI 315 (364)
T ss_pred ECCCCcEEEEEeeCC
Confidence 6 366999999944
No 28
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.27 E-value=1.7e-11 Score=135.53 Aligned_cols=190 Identities=13% Similarity=0.156 Sum_probs=123.3
Q ss_pred HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002403 72 KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (927)
Q Consensus 72 kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (927)
.+..+++..|. |+-++..+..+++||..+.++|+++|||+|++..+.+.. .....++.+.. -..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~------~~~~~~~~~~~-~~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLK------YLNSPRKTLLK-LESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccc------cccChHHHHHH-HHhcCCCEEEe
Confidence 45667778884 555778999999999999999999999999999887521 00001111110 12356899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC----ce---eE
Q 002403 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (927)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~----~~---vh 222 (927)
|++|. ..+|++.... ..|.+.+.. ....+..+|+||||+ |+++.|-++|. +. +.
T Consensus 178 P~~ggsS~GV~~v~~~------~el~~a~~~----------~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKITNA------EQLMTLLAL----------IFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEECCH------HHHHHHHHH----------HHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 99974 3344333221 112221210 112355789999995 89999999972 21 11
Q ss_pred --EEeecCCCCCCc---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEecCCcc
Q 002403 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWS 290 (927)
Q Consensus 223 --Ae~RkSPv~dG~---vrrN~~gke~--r~~v~Lt~e----Ek~iA~k~~~afgq~-VcGfDlLRs~~~syV~DVNGwS 290 (927)
.|-+ | .|. ++...+.++. ..|..|+++ -+++|.++++++|.. ++++|++-+.|++||+|||.-+
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt~P 315 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNTLP 315 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeCCC
Confidence 2222 1 222 2233333332 245667765 488999999999965 9999999988889999999554
No 29
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.27 E-value=1e-10 Score=129.20 Aligned_cols=199 Identities=15% Similarity=0.243 Sum_probs=131.8
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++-..-++-.+ .+..++++.+ ||+-++..+..+++||..+.++|+++|||+|++.++....
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 4788877754444453 5677888888 5666889999999999999999999999999999887521
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+ +. -..++.|+|+||.+|. ..+|.+.... ..|...+.. ..+.+..+|+||||+ |+.+-
T Consensus 158 ~-~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~------~eL~~a~~~----------a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-PD--AATLTYPVFVKPARSGSSFGVSKVNSA------DELDYAIES----------ARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-hh--hhhcCCCEEEEeCCCCCCCCEEEeCCH------HHHHHHHHH----------HHhcCCcEEEECCcC--CEEEE
Confidence 1 11 1245689999999974 2222222211 111111110 122356799999996 88999
Q ss_pred EEEECCc---eeEEEeecCCCCCCceeec----CC-C---CceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEe
Q 002403 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD-G---KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLR 276 (927)
Q Consensus 213 vytVG~~---~vhAe~RkSPv~dG~vrrN----~~-g---ke~r~~v~Lt~e----Ek~iA~k~~~afgq-~VcGfDlLR 276 (927)
|-++|.. .+....+..+ ..|.++.. .. | .....|..|+++ -+++|.++++++|. .+|.+|++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9888853 2222233322 13333311 11 1 123457778765 46899999999999 799999998
Q ss_pred e-CCCcEEEecCC
Q 002403 277 C-EGRSYVCDVNG 288 (927)
Q Consensus 277 s-~~~syV~DVNG 288 (927)
+ +|..||+|||-
T Consensus 296 ~~~g~~~llEINt 308 (343)
T PRK14568 296 QEDGTVVLNEVNT 308 (343)
T ss_pred eCCCCEEEEEeeC
Confidence 7 45688999994
No 30
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.21 E-value=5.7e-11 Score=133.05 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=123.6
Q ss_pred ch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCc
Q 002403 69 PL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (927)
Q Consensus 69 pl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kP 146 (927)
|| .....+++..+. +.-.+..+-.+++||..+.++|+++|||+|++..+.. .++....- ..++.|
T Consensus 38 ~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~------------~~ea~~~~-~~~g~P 104 (379)
T PRK13790 38 PLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVER------------KKDALTYI-ENCELP 104 (379)
T ss_pred HHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECC------------HHHHHHHH-HhcCCC
Confidence 44 455677888885 4446778889999999999999999999999887654 12222211 124689
Q ss_pred EEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeE--E
Q 002403 147 FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH--A 223 (927)
Q Consensus 147 fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vh--A 223 (927)
+|+||..|. -.++++.....+ ....++.+- ....++.+|+||||.-.--.|-+++-|..++. +
T Consensus 105 vVvKp~~~~~gkGV~iv~~~~e---l~~a~~~~~-----------~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~ 170 (379)
T PRK13790 105 VVVKKDGLAAGKGVIIADTIEA---ARSAIEIMY-----------GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDC 170 (379)
T ss_pred EEEEeCCCCCCCCEEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEcccCceEEEEEEeeCCEEEeccc
Confidence 999999875 233333322111 111111110 01224579999999766678888887765432 2
Q ss_pred EeecCC-CCCCceeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---CCceeE---EEEEeeCCCcEEEecCC
Q 002403 224 EARKSP-VVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (927)
Q Consensus 224 e~RkSP-v~dG~vrrN~~gke~r~~v-~Lt~eE-----k~iA~k~~~af---gq~VcG---fDlLRs~~~syV~DVNG 288 (927)
..++.. ..+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |...+| +|++-+.+|+||+|||.
T Consensus 171 ~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 171 IAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred ccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 232221 2467666676443333344 467654 67899999998 545555 59988888999999996
No 31
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=99.15 E-value=1.8e-10 Score=126.36 Aligned_cols=259 Identities=22% Similarity=0.352 Sum_probs=153.9
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchHHHHHHHHhcC-C
Q 002403 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRK-P 82 (927)
Q Consensus 4 ~~~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~-p 82 (927)
.+..+||.|--.+|.+|==-+. |--+.+...++++--. ++.|+++=--.||+|-=..+.--.....+|.+..- .
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~-~~~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v 79 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPS-FIDLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEV 79 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCH-HCCCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTS
T ss_pred ccceEEEEEECHHHHHHhhHHH-HHHHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCe
Confidence 4678999888777765533222 2233444456666433 45666655458999977776332356667777632 3
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhC-------CCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-
Q 002403 83 FLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG- 154 (927)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~-------gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G- 154 (927)
.+|..++++..+.||...|++|++. +|.+|+.+++..+. . +..+.+.-.| +..|+|.||+-+
T Consensus 80 ~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~-------~~~~~l~~ag--L~fPlI~KPlvA~ 149 (307)
T PF05770_consen 80 VVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA-E-------SLPELLKEAG--LKFPLICKPLVAC 149 (307)
T ss_dssp EEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH-C-------CHHHHHHCTT--S-SSEEEEESB-S
T ss_pred EEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH-H-------HHHHHHHHCC--CcccEEeeehhhc
Confidence 6788899999999999988888774 78999999998641 1 1222222344 689999999984
Q ss_pred ---cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC-CC
Q 002403 155 ---DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PV 230 (927)
Q Consensus 155 ---edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkS-Pv 230 (927)
+-|...|-|... |-.. + ....+.||||.-+|.=-||||||+.+. ...|+| |=
T Consensus 150 Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~v~-~v~R~SLpn 205 (307)
T PF05770_consen 150 GSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDKVF-VVKRPSLPN 205 (307)
T ss_dssp STSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTEEE-EEEEE----
T ss_pred CCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCEEE-EEECCCCCC
Confidence 458888877542 2221 1 224599999999999999999997754 466666 21
Q ss_pred C-CCce-------e----ecCCCCce-------eeeeeCC--HHHHHHHHHHHHHhCCceeEEEEEeeCCC---cEEEec
Q 002403 231 V-DGVV-------M----RNPDGKEV-------RYPVLLT--PNEKQMAREVCIAFRQAVCGFDLLRCEGR---SYVCDV 286 (927)
Q Consensus 231 ~-dG~v-------r----rN~~gke~-------r~~v~Lt--~eEk~iA~k~~~afgq~VcGfDlLRs~~~---syV~DV 286 (927)
+ .|+. . ++.+-... ...+... +.-+++|..+-+++|++..|||++|.++. .||+||
T Consensus 206 ~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 206 VSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp --SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEE
T ss_pred CCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEe
Confidence 1 1111 1 11110000 0112222 23478999999999999999999998544 789999
Q ss_pred CCccccccchhhHHH
Q 002403 287 NGWSFVKNSYKYYDD 301 (927)
Q Consensus 287 NGwSFVK~n~~YYd~ 301 (927)
|=|+=+|+-..|+..
T Consensus 286 NyFPgY~~vp~f~~~ 300 (307)
T PF05770_consen 286 NYFPGYKKVPDFESV 300 (307)
T ss_dssp EES--TTTSCTHHHH
T ss_pred ccCCCccCCCChHHH
Confidence 999888888999843
No 32
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.12 E-value=6.1e-10 Score=122.81 Aligned_cols=193 Identities=19% Similarity=0.268 Sum_probs=120.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.||++ ++-...+|. .++++++..+..+.++..+..+++||....+.|+++|||+|++..+.... +....
T Consensus 60 ~~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~~ 128 (352)
T TIGR01161 60 SCDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE---------ELDAA 128 (352)
T ss_pred hCCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH---------HHHHH
Confidence 35654 443344444 34566777766678999999999999999999999999999999887520 11111
Q ss_pred eeecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
+ ..++.|+|+||..|. ..++++...... ....++. . .+..+|+||||+- |..+-|
T Consensus 129 ~----~~~g~P~vvKp~~~g~~g~Gv~~v~~~~e---l~~a~~~--------------~-~~~~~lvEe~I~~-~~E~sv 185 (352)
T TIGR01161 129 L----QELGFPVVLKARTGGYDGRGQYRIRNEAD---LPQAAKE--------------L-GDRECIVEEFVPF-ERELSV 185 (352)
T ss_pred H----HHcCCCEEEEeCCCCCCCCCEEEECCHHH---HHHHHHh--------------c-CCCcEEEEecCCC-CeEEEE
Confidence 1 124589999999863 223333222110 1111111 1 1347999999973 577777
Q ss_pred EEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCC-cEEE
Q 002403 214 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVC 284 (927)
Q Consensus 214 ytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~~~-syV~ 284 (927)
.++. +++.. -|+..... ++-.......|..+++ +-+++|.++++++|. .++++|++.+.+| +||+
T Consensus 186 ~~~~~~~G~~~~-----~~~~~~~~-~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~ 259 (352)
T TIGR01161 186 IVARSADGETAF-----YPVVENIH-QDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLIN 259 (352)
T ss_pred EEEEcCCCCEEE-----ECCcccEE-eCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEE
Confidence 6652 23221 23222222 1111111223555654 357889999999998 4999999998666 9999
Q ss_pred ecCC
Q 002403 285 DVNG 288 (927)
Q Consensus 285 DVNG 288 (927)
|||-
T Consensus 260 Einp 263 (352)
T TIGR01161 260 ELAP 263 (352)
T ss_pred EecC
Confidence 9994
No 33
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.11 E-value=3.1e-10 Score=126.16 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=123.1
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHH-hCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~-~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|++|+.... ++. .++..++..+.++..+.++..+++||....+.|. ++|||+|++..+.. .++
T Consensus 75 ~id~vi~~~e~-~~~-~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s------------~~~ 140 (395)
T PRK09288 75 KPDYIVPEIEA-IAT-DALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADS------------LEE 140 (395)
T ss_pred CCCEEEEeeCc-CCH-HHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECC------------HHH
Confidence 48888886654 333 2344555567666788999999999999999985 78999999988875 122
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIyeEFi~~~G~DIK 212 (927)
..+.. ..++.|+|+||..|. -.++++..... -..+.++.... ..| ..+.+|+||||+ .|..+-
T Consensus 141 l~~~~-~~~g~P~VvKP~~g~~s~Gv~~v~~~~---el~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~s 205 (395)
T PRK09288 141 LRAAV-EEIGYPCVVKPVMSSSGKGQSVVRSPE---DIEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEIT 205 (395)
T ss_pred HHHHH-HhcCCCEEEEeCCCcCCCCeEEECCHH---HHHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEE
Confidence 22211 135689999999885 12233222211 11122222100 001 136799999997 366777
Q ss_pred EEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCC-ceeEEEEEeeCCCcEEE
Q 002403 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (927)
Q Consensus 213 vytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk----~iA~k~~~afgq-~VcGfDlLRs~~~syV~ 284 (927)
|.++.. ..... .| . +.++.+-+-.+...|..|+++.. ++|.++++++|. .++.+|++-+++++||+
T Consensus 206 v~~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~vi 279 (395)
T PRK09288 206 LLTVRAVDGGTHFC----AP-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFS 279 (395)
T ss_pred EEEEEcCCCCEEEe----cC-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEE
Confidence 776632 22222 12 1 22322212122335677877654 489999999984 56779999988899999
Q ss_pred ecCC
Q 002403 285 DVNG 288 (927)
Q Consensus 285 DVNG 288 (927)
|+|.
T Consensus 280 Einp 283 (395)
T PRK09288 280 EVSP 283 (395)
T ss_pred EecC
Confidence 9993
No 34
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.09 E-value=1.1e-10 Score=114.56 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=95.2
Q ss_pred HhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHH
Q 002403 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (927)
Q Consensus 93 ~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~ 172 (927)
++.||....+++.+.|||+|++..+.... +..+.+. .++.|+|+||..|. .|.|+.
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~----~~~~p~vvKp~~g~-----------gs~gv~ 56 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAE----DLGFPFVVKPVDGS-----------GSRGVF 56 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHH----HSSSSEEEEESS-S-----------TTTT-E
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEcCccc-----------cCCCEE
Confidence 46799999999999999999999987621 1222222 12379999999996 233332
Q ss_pred HHHhhcCCCccccccccccc-----ccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCC---Cce
Q 002403 173 ELFRKVGNRSSEFHPDVRRV-----RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KEV 244 (927)
Q Consensus 173 rLfrki~n~sS~~~~~~~~~-----r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~g---ke~ 244 (927)
+++.. + .+..-+..+ ...+.||+||||+...-.+.+++.+++.+.+...+.- .....+. ...
T Consensus 57 -~~~~~---~-~l~~~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~ 126 (184)
T PF13535_consen 57 -IVHSP---E-ELEAALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVPT 126 (184)
T ss_dssp -EESSH---H-HHHHHHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEEE
T ss_pred -EeCCH---H-HHHHHHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----cccccccccceee
Confidence 21111 1 111000011 2357899999999655777888888887555443331 0112221 233
Q ss_pred eeeeeC----CHHHHHHHHHHHHHhCC--ceeEEEEEeeCCC-cEEEecCC
Q 002403 245 RYPVLL----TPNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (927)
Q Consensus 245 r~~v~L----t~eEk~iA~k~~~afgq--~VcGfDlLRs~~~-syV~DVNG 288 (927)
.+.... .++-++.+.++++++|. .++++|++...+| .|++|||.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 127 GYSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred eeecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 333322 26778899999999997 9999999999877 58999994
No 35
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.06 E-value=5.5e-10 Score=126.03 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=123.1
Q ss_pred cCeeeccccCCCch-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
+|++|+ +...|+ ......++..+ |+.-++..+..+++||....++|+++|||+|++..+... . +..+
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~--~-------~~~~ 131 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA--E-------EALA 131 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHH
Confidence 466664 223444 23445666677 445578888999999999999999999999999877641 0 1122
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
.+. .++.|+|+||..|. -.++++...... ....++.+-+. +.+. +..+.+|+||||+-.--.|-+
T Consensus 132 ~~~----~~~~P~VvKP~~~~gs~Gv~~v~~~~e---l~~~~~~~~~~-~~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 132 YLD----EKGAPIVVKADGLAAGKGVVVAMTLEE---AKAAVDDMLAG-NKFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHH----HcCCCEEEEeCCCCCCCcEEEeCCHHH---HHHHHHHHhhc-cccc------CCCCeEEEEEccCCcEEEEEE
Confidence 221 24589999999875 122222221110 11122221110 0010 124579999999743334444
Q ss_pred EEECCceeE-EEeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC---C---ceeEEEEEeeCC
Q 002403 214 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 279 (927)
Q Consensus 214 ytVG~~~vh-Ae~Rk-SPv~dG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~k~~~afg---q---~VcGfDlLRs~~ 279 (927)
++-|..+.. ...|. -...+|.+.-|+.|-+.-.|.. |+++.. +|+.++.++++ . .++.+|++-+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 443444322 22221 1224676666766666666765 777543 36666777654 3 567899999999
Q ss_pred CcEEEecCC
Q 002403 280 RSYVCDVNG 288 (927)
Q Consensus 280 ~syV~DVNG 288 (927)
|+||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999994
No 36
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.05 E-value=1.2e-09 Score=113.95 Aligned_cols=49 Identities=43% Similarity=0.512 Sum_probs=39.6
Q ss_pred hhHHHhhc--cCCCCCchhhhcccccccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
.++|+.+| |+. ++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 28 ~~~G~~lr~~y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 28 FELGRYFRQRYGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 46888888 753 33224567789999999999999999999999998665
No 37
>PRK07206 hypothetical protein; Provisional
Probab=99.03 E-value=2.9e-09 Score=119.34 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=124.4
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.+|++|+..-.+.++...+ .+..+++..|+..+...++||....+.|.++|||+|++..+.... +..+.
T Consensus 70 ~~d~vi~~~e~~~~~~a~l--~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~---------e~~~~ 138 (416)
T PRK07206 70 GPEAIIAGAESGVELADRL--AEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWE---------EAEAW 138 (416)
T ss_pred CCCEEEECCCccHHHHHHH--HHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---------HHHHH
Confidence 3689999765555553333 234455558999999999999999999999999999999886410 12222
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvy 214 (927)
+.-.| -++.|+|+||+.|. -.+|++...... .+..++..-+..+.+. ..+..+|+||||+-.--.|-++
T Consensus 139 ~~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~e---l~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~ 208 (416)
T PRK07206 139 LRENG-LIDRPVVIKPLESAGSDGVFICPAKGD---WKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFV 208 (416)
T ss_pred HHhcC-CCCCCEEEeCCCCCCCCCEEEeCCHHH---HHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEE
Confidence 22111 01349999999975 234444333221 2223333211111110 1246799999997544455667
Q ss_pred EECCceeE-EEee--cCCCCCCceeecCCCCceeeee--eCCHHHHHHHHHHHHHhCC--ceeEEEEEeeCCCcEEEecC
Q 002403 215 TVGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYPV--LLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (927)
Q Consensus 215 tVG~~~vh-Ae~R--kSPv~dG~vrrN~~gke~r~~v--~Lt~eEk~iA~k~~~afgq--~VcGfDlLRs~~~syV~DVN 287 (927)
+.+++... +..+ +.+.-+|.+... ... ..|. ...++-.++|.++++++|. .++.+|+..+.+|++|+|||
T Consensus 209 ~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 209 SLDGNHLVTEIVRYHKTSLNSGSTVYD--YDE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred EECCEEEEEEeEEeeecccCCCCceec--ccc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 66777443 2232 222223322111 000 0111 1223445678999999998 57899999999999999999
No 38
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.99 E-value=5.4e-09 Score=116.74 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=121.4
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.||++ +|-....|. .++++++.. ..+.++.++..+++||...-+.|+++|||+|++..+... ++.
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~------------~~l 127 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSA------------EDL 127 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 57764 444445554 556666665 557799999999999999999999999999999988751 222
Q ss_pred eeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
... ...++.|+|+||..| . .+++++...... ....++.+ ..+.+|+||||+- |..+-|
T Consensus 128 ~~~-~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 128 EAA-LADLGLPAVLKTRRGGYDGKGQWVIRSAED---LEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HHH-HHHcCCcEEEEeCCCCcCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 111 112468999999984 3 344443322111 11122221 2457999999984 566777
Q ss_pred EEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCC-cEEEecC
Q 002403 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (927)
Q Consensus 214 ytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~~~-syV~DVN 287 (927)
.+++.. ..+.+--|+.. .+.+|-.-.....|..+++ +-+++|.++++++|.. ++++|++.+.+| +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 665421 00111123221 1212100011223445554 5678899999999965 888999998666 9999999
Q ss_pred Cc
Q 002403 288 GW 289 (927)
Q Consensus 288 Gw 289 (927)
--
T Consensus 265 pR 266 (372)
T PRK06019 265 PR 266 (372)
T ss_pred CC
Confidence 53
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.97 E-value=1.4e-09 Score=136.32 Aligned_cols=198 Identities=17% Similarity=0.259 Sum_probs=129.7
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
..|.+|+.++.-.++ .....++..+. +.-|+..+..+++||.+..++|+++|||+|++..+... ++
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~------------ee 695 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSV------------EE 695 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCH------------HH
Confidence 468899988866666 44456667774 45588999999999999999999999999999988651 22
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC-CceeE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~-G~DIK 212 (927)
..... ..++.|+|+||..|. ..++++.+.... ....++..- ....++.+|+||||+-. .-+|-
T Consensus 696 ~~~~~-~~igyPvvVKP~~~~Gg~Gv~iv~~~ee---L~~~~~~a~-----------~~s~~~~vlIEefI~G~~E~sV~ 760 (1066)
T PRK05294 696 ALEVA-EEIGYPVLVRPSYVLGGRAMEIVYDEEE---LERYMREAV-----------KVSPDHPVLIDKFLEGAIEVDVD 760 (1066)
T ss_pred HHHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------hhCCCCcEEEEecCCCCEEEEEE
Confidence 22211 235689999998875 122222221110 011111100 11235679999999764 67888
Q ss_pred EEEECCce-eEE-EeecCCCCCCceeecCCCCceee---eeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeCCCcE
Q 002403 213 VYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (927)
Q Consensus 213 vytVG~~~-vhA-e~RkSPv~dG~vrrN~~gke~r~---~v~Lt~e----Ek~iA~k~~~afgq-~VcGfDlLRs~~~sy 282 (927)
+++-|..+ +.+ +.+.. +...|.|+... +..|+++ -+++|.++++++|. .+++||++.+.+++|
T Consensus 761 ~v~dg~~v~i~~i~e~i~-------~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~y 833 (1066)
T PRK05294 761 AICDGEDVLIGGIMEHIE-------EAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVY 833 (1066)
T ss_pred EEecCCeEEEeeeEEeee-------eccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEE
Confidence 88766532 222 23222 12345454433 3467754 46688899999998 466799999999999
Q ss_pred EEecCC
Q 002403 283 VCDVNG 288 (927)
Q Consensus 283 V~DVNG 288 (927)
|+|||.
T Consensus 834 ViEiNp 839 (1066)
T PRK05294 834 VIEVNP 839 (1066)
T ss_pred EEEEec
Confidence 999995
No 40
>PRK05586 biotin carboxylase; Validated
Probab=98.95 E-value=2.1e-09 Score=122.65 Aligned_cols=203 Identities=18% Similarity=0.243 Sum_probs=120.2
Q ss_pred CCcCeeeccccCCCchH-HHH-HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE--EeccCCCcccccc
Q 002403 55 PICDCLIAFYSSGYPLE-KAE-SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 129 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai-~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~--~~r~~p~~~~~~~ 129 (927)
..||+++|-| ||-.+ ..+ +-++..+ ||+..+.++..+++||....++|+++|||+|++.. +..
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 5789998865 33221 122 2234455 46789999999999999999999999999998753 222
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 002403 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G 208 (927)
.++....- ..+++|+|+||++|. -.++++..... -....|+...+.+- ....++.+|+||||+. +
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~---el~~a~~~~~~~~~-------~~~~~~~vivEe~i~g-~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEE---ELIKAFNTAKSEAK-------AAFGDDSMYIEKFIEN-P 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHH---HHHHHHHHHHHHHH-------HhcCCCeEEEEecCCC-C
Confidence 12222211 135689999999986 12222222111 11122222110000 0011467999999963 4
Q ss_pred ceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeee-eeCCH----HHHHHHHHHHHHhCCceeE-EEEEeeCC
Q 002403 209 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYP-VLLTP----NEKQMAREVCIAFRQAVCG-FDLLRCEG 279 (927)
Q Consensus 209 ~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~-v~Lt~----eEk~iA~k~~~afgq~VcG-fDlLRs~~ 279 (927)
+.+-|.+++ +++++.-.|... ..++|..--+.. | ..|++ +-+++|.++++++|..-++ +|++.+.+
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~~~~~~~~-p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~ 281 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRNQKVLEEA-PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKD 281 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecccceEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCC
Confidence 678887776 355555433221 122221111111 2 13666 3457899999999976554 99999755
Q ss_pred C-cEEEecCC
Q 002403 280 R-SYVCDVNG 288 (927)
Q Consensus 280 ~-syV~DVNG 288 (927)
| .||+|||.
T Consensus 282 g~~~~iEvNp 291 (447)
T PRK05586 282 GNFYFMEMNT 291 (447)
T ss_pred CCEEEEEEEC
Confidence 4 79999994
No 41
>PRK08462 biotin carboxylase; Validated
Probab=98.93 E-value=1.6e-09 Score=123.14 Aligned_cols=200 Identities=18% Similarity=0.265 Sum_probs=117.9
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~-~r~~p~~~~~~~~e 131 (927)
.+|+++|-++ |.- ....+.++..|. ++-++.++..+++||....++|.++|||+|++... -.+
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~----------- 142 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS----------- 142 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-----------
Confidence 4789998874 311 223345667774 67799999999999999999999999999986532 111
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccc---cccccccCcceEEeeccCCCC
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTGG 208 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~---~~~~~r~~gsyIyeEFi~~~G 208 (927)
.++.... -..++.|+|+||++|. .|-|+. +++....-...|.- +......++.+|+||||.. +
T Consensus 143 ~~~~~~~-~~~~g~PvvvKP~~g~-----------gs~Gv~-~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~ 208 (445)
T PRK08462 143 YEEAKKI-AKEIGYPVILKAAAGG-----------GGRGMR-VVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN-P 208 (445)
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCC-----------CCCCeE-EECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC-C
Confidence 1111111 1235689999999986 333432 22111000000000 0000012567999999965 5
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCce-eeee-eCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC
Q 002403 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPV-LLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (927)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~-r~~v-~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~ 278 (927)
+.+.|.++|. ++++.-.|...+ .+++ .+-. ..|. .|++ +-+++|.++++++|.. ++-||++-+.
T Consensus 209 ~e~~v~v~~~~~g~~~~~g~~~~~~----~~~~--~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~ 282 (445)
T PRK08462 209 RHIEVQILGDKHGNVIHVGERDCSL----QRRH--QKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS 282 (445)
T ss_pred eEEEEEEEECCCCCEEEEEeccccc----eecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC
Confidence 5677777743 444443232211 1111 1110 0122 4554 5577899999999985 3349999874
Q ss_pred -CCcEEEecCC
Q 002403 279 -GRSYVCDVNG 288 (927)
Q Consensus 279 -~~syV~DVNG 288 (927)
|++||+|||.
T Consensus 283 ~g~~~viEiNp 293 (445)
T PRK08462 283 NLDFYFMEMNT 293 (445)
T ss_pred CCCEEEEEEEC
Confidence 5799999993
No 42
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.93 E-value=4.6e-09 Score=129.46 Aligned_cols=203 Identities=14% Similarity=0.090 Sum_probs=127.9
Q ss_pred CcccCCcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 002403 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (927)
Q Consensus 51 ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~ 130 (927)
+..++.+|+++++.-.+.++ |-+-.+..+.+ -|+.++..+++||...-+.|+++|||+|++..++...
T Consensus 65 ~~~~~~i~~V~~~se~~v~~--aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~--------- 132 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYFIEV--ASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA--------- 132 (887)
T ss_pred HHhcCCCCEEEeCchhhHHH--HHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH---------
Confidence 45666788888874434433 22233344433 3788999999999999999999999999999887520
Q ss_pred cccceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~ 209 (927)
+..+.+ ..+++|+|+||++|.. .+|++. .+.. -....+..+. . ...+.+|+||||+-.--
T Consensus 133 e~~~~~----~~~~~PvVVKP~~g~gS~GV~~v--~~~~-el~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~ 193 (887)
T PRK02186 133 VALDAL----DGLTYPVVVKPRMGSGSVGVRLC--ASVA-EAAAHCAALR-----------R-AGTRAALVQAYVEGDEY 193 (887)
T ss_pred HHHHHH----HhCCCCEEEEeCCCCCCCCeEEE--CCHH-HHHHHHHHHH-----------h-cCCCcEEEeecccCCcE
Confidence 111222 1246899999999861 222221 1110 0011111110 0 12577999999986556
Q ss_pred eeEEEEECCc-eeEEEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC--ceeEEEEEeeCCCcE
Q 002403 210 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ--AVCGFDLLRCEGRSY 282 (927)
Q Consensus 210 DIKvytVG~~-~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~e----Ek~iA~k~~~afgq--~VcGfDlLRs~~~sy 282 (927)
.|-+++.++. .+.+..++.......|.-+ +.-+|..++++ -.+++.++++++|. .++++|++.+.+++|
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~ 269 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVV 269 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEE
Confidence 6777776543 4555566542111122111 22356677753 45788999999998 578999999999999
Q ss_pred EEecCC
Q 002403 283 VCDVNG 288 (927)
Q Consensus 283 V~DVNG 288 (927)
|+|||.
T Consensus 270 liEIn~ 275 (887)
T PRK02186 270 IIEINP 275 (887)
T ss_pred EEEECC
Confidence 999994
No 43
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.93 E-value=3.3e-09 Score=122.17 Aligned_cols=204 Identities=18% Similarity=0.244 Sum_probs=122.0
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
.||+++|-| ||-- ..+.+.++..+ ||+-++.++..+++||....++|.++|||+|++....-. +.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~----------~~ 140 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLA----------DL 140 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCC----------CH
Confidence 589999855 3321 22345555666 466788999999999999999999999999887542110 11
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCCCCc
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 209 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~---~~r~~gsyIyeEFi~~~G~ 209 (927)
++..... ..++.|+|+||..|. -|-|+. +.+....-...|+--.. ....++.+++|+||.. +.
T Consensus 141 ~e~~~~~-~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~~ 206 (472)
T PRK07178 141 DEALAEA-ERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-PK 206 (472)
T ss_pred HHHHHHH-HHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-Ce
Confidence 2222211 235689999999986 333432 22211100000000000 0012446889999954 66
Q ss_pred eeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCc-eeEEEEEee-CCC
Q 002403 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EGR 280 (927)
Q Consensus 210 DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk----~iA~k~~~afgq~-VcGfDlLRs-~~~ 280 (927)
.+-|-++| ++++|...|... ..+++..-.|..-...|+++.+ ++|.++++++|.. ++.+|++-+ .|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 66665554 356666555431 1233332223321226777654 5999999999975 455999985 678
Q ss_pred cEEEecCCc
Q 002403 281 SYVCDVNGW 289 (927)
Q Consensus 281 syV~DVNGw 289 (927)
+||+|||.=
T Consensus 283 ~y~iEiNpR 291 (472)
T PRK07178 283 VYFMEMNTR 291 (472)
T ss_pred EEEEEEeCC
Confidence 999999943
No 44
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.91 E-value=2.8e-09 Score=123.06 Aligned_cols=205 Identities=16% Similarity=0.188 Sum_probs=121.6
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE-EeccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL-VNREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~-~~r~~p~~~~~~~~e 131 (927)
.+|++++.|+ |-. ..+.+.++..+. |+-++.++..+++||....++|.++|||+|+... .... +
T Consensus 73 ~iDaI~pg~g--~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~----------~ 140 (478)
T PRK08463 73 GADAIHPGYG--FLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE----------S 140 (478)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC----------C
Confidence 4788998763 321 123444556664 4458899999999999999999999999977433 2211 0
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~D 210 (927)
.++..... ..++.|+|+||+.|. ..++++-.... -....++... ++ ......++.+++|+||.. ++.
T Consensus 141 ~~~~~~~~-~~igyPvvvKP~~ggGg~Gv~iv~~~~---eL~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~ 208 (478)
T PRK08463 141 MEEIKIFA-RKIGYPVILKASGGGGGRGIRVVHKEE---DLENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRH 208 (478)
T ss_pred HHHHHHHH-HHhCCCEEEEeCCCCCCCceEEeCCHH---HHHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeE
Confidence 12222211 235689999999985 12222222111 0111122110 00 001123567999999975 666
Q ss_pred eEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCHHHH----HHHHHHHHHhCCceeE-EEEEeeC-CC
Q 002403 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GR 280 (927)
Q Consensus 211 IKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v-~Lt~eEk----~iA~k~~~afgq~VcG-fDlLRs~-~~ 280 (927)
+-+-++|. +++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-+| +|++.+. ++
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~ 283 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR 283 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCC
Confidence 76656654 466666664321 12221111222 22 4777665 4899999999977565 9999875 77
Q ss_pred cEEEecCCc
Q 002403 281 SYVCDVNGW 289 (927)
Q Consensus 281 syV~DVNGw 289 (927)
+||||||.=
T Consensus 284 ~y~iEiN~R 292 (478)
T PRK08463 284 FYFMEMNTR 292 (478)
T ss_pred EEEEEEECC
Confidence 999999943
No 45
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.90 E-value=1.7e-08 Score=126.55 Aligned_cols=199 Identities=18% Similarity=0.264 Sum_probs=128.8
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|.+|+.++.-.++ .+...++..+. +.-|+.++..++.||.+..++|+++|||+|++..+... ++
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~------------ee 695 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV------------EE 695 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH------------HH
Confidence 478999888755444 22233445564 44589999999999999999999999999999988751 22
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~-~G~DIK 212 (927)
..... ..++.|+|+||..|. ..++.+.+.... ....++... ....++.+|+||||+. .--+|-
T Consensus 696 ~~~~~-~~igyPvIVKP~~~~Gg~gv~iv~~~ee---L~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 696 AVEFA-SEIGYPVLVRPSYVLGGRAMEIVYNEEE---LRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHHHH-HhcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 22211 134689999998874 233333332110 111111110 1124567999999974 456788
Q ss_pred EEEECCceeEEE-eecCCCCCCceeecCCCCceee--ee-eCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 002403 213 VYTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVRY--PV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (927)
Q Consensus 213 vytVG~~~vhAe-~RkSPv~dG~vrrN~~gke~r~--~v-~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~~~syV 283 (927)
+++.|++++... ... ..+.+.|.|.... |. .|++ +-+++|.++++++|. .++.||++...+++||
T Consensus 761 ~l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yv 834 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYV 834 (1050)
T ss_pred EEEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEE
Confidence 888888765432 111 1123456555433 32 5676 456788999999994 4556999999999999
Q ss_pred EecCC
Q 002403 284 CDVNG 288 (927)
Q Consensus 284 ~DVNG 288 (927)
+|||.
T Consensus 835 IEvNp 839 (1050)
T TIGR01369 835 IEVNP 839 (1050)
T ss_pred EEEeC
Confidence 99994
No 46
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.89 E-value=2.9e-09 Score=121.09 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=116.5
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e~ 132 (927)
.||+++|.++--.--..+...++..+. ++.++.++..+++||....+.|+++|||+|++. .+.. .
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~------------~ 141 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDD------------E 141 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCC------------H
Confidence 489999877321111233455566674 567999999999999999999999999999864 2322 1
Q ss_pred cceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DI 211 (927)
++..... ..++.|+|+||+.|.. .++++-.... -....++.....+ . ....+..+++||||+. +..+
T Consensus 142 ~~~~~~~-~~~g~PvvvKP~~g~gs~Gv~iv~~~~---el~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~ 209 (451)
T PRK08591 142 EEALAIA-KEIGYPVIIKATAGGGGRGMRVVRTEA---ELEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHI 209 (451)
T ss_pred HHHHHHH-HHcCCCEEEEECCCCCCceEEEECCHH---HHHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEE
Confidence 2222211 1346899999999861 2222222111 0111222210000 0 0012456899999964 4556
Q ss_pred EEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeeeCC----HHHHHHHHHHHHHhCCc-eeEEEEEee-CCCcE
Q 002403 212 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (927)
Q Consensus 212 KvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt----~eEk~iA~k~~~afgq~-VcGfDlLRs-~~~sy 282 (927)
-+-+++ +++++.-.|.... .+++..-.+..-+..|+ .+-.++|.++++++|.. ++.||++.+ +|++|
T Consensus 210 ~v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~ 285 (451)
T PRK08591 210 EIQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFY 285 (451)
T ss_pred EEEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEE
Confidence 554443 3455543332110 01100000000011344 45567899999999975 444999988 67799
Q ss_pred EEecCC
Q 002403 283 VCDVNG 288 (927)
Q Consensus 283 V~DVNG 288 (927)
|+|||.
T Consensus 286 viEINp 291 (451)
T PRK08591 286 FIEMNT 291 (451)
T ss_pred EEEEEC
Confidence 999995
No 47
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.89 E-value=7.6e-09 Score=116.58 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=117.4
Q ss_pred cCeeeccccCCCch-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
+|++|+... .++ ..+.+.++..+ |+.-++..+..+++||....++|+++|||+|++..+... ++
T Consensus 65 id~vi~~~e--~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~ 130 (423)
T TIGR00877 65 IDLAVIGPE--APLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP------------EE 130 (423)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 677776433 333 34566777778 556688999999999999999999999999999888651 22
Q ss_pred eeeecCeeccCc-EEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 135 FVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 135 ~i~v~g~~~~kP-fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
....- ..++.| +|+||..|. -.++++...... ....++.+-+.+ +. ..+..+|+||||+ |..+-
T Consensus 131 ~~~~~-~~~g~P~~VvKp~~~~gg~Gv~~v~~~~e---l~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 131 ALSYI-QEKGAPAIVVKADGLAAGKGVIVAKTNEE---AIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHHHH-HhcCCCeEEEEECCCCCCCCEEEECCHHH---HHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 22211 124589 999999875 122322221110 111122111000 10 1245799999997 55555
Q ss_pred EEEE--CCceeE-EEeecC-CCCCCceeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhC------CceeEEEEEe
Q 002403 213 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 276 (927)
Q Consensus 213 vytV--G~~~vh-Ae~RkS-Pv~dG~vrrN~~gke~r~~v-~Lt~e-----Ek~iA~k~~~afg------q~VcGfDlLR 276 (927)
|.++ |..+.. ..+|.- ...+|..--++.+-+.-.|. .++++ .++++.++.++++ -.++.+|++.
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 5444 443332 222211 11233222222221222232 35443 2456666777774 3678899999
Q ss_pred eCCCcEEEecCC
Q 002403 277 CEGRSYVCDVNG 288 (927)
Q Consensus 277 s~~~syV~DVNG 288 (927)
+.+++||||||.
T Consensus 277 t~~g~~viEin~ 288 (423)
T TIGR00877 277 TKEGPKVLEFNC 288 (423)
T ss_pred ECCCcEEEEEEc
Confidence 988899999993
No 48
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.88 E-value=3.9e-09 Score=122.77 Aligned_cols=203 Identities=16% Similarity=0.248 Sum_probs=122.9
Q ss_pred CcCeeeccccCCCchH--HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
.+|+++|.| ||..+ ...+.++..+ +|+-++.++..+++||....++|+++|||+|+.....-. +.
T Consensus 74 ~~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~----------~~ 141 (499)
T PRK08654 74 GADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIE----------DI 141 (499)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCC----------CH
Confidence 368899876 33321 3345555666 456788999999999999999999999999877643110 01
Q ss_pred cceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DI 211 (927)
++..... ..++.|+|+||..|. ..++.+-.... -....|+... +.-. ..+ .++.+++|+||.. ++.|
T Consensus 142 ~e~~~~a-~~igyPvvIKp~~GgGG~Gv~iv~~~~---eL~~a~~~~~---~~a~---~~f-~~~~v~vE~~I~~-~r~i 209 (499)
T PRK08654 142 EEAKEIA-EEIGYPVIIKASAGGGGIGMRVVYSEE---ELEDAIESTQ---SIAQ---SAF-GDSTVFIEKYLEK-PRHI 209 (499)
T ss_pred HHHHHHH-HHhCCCEEEEeCCCCCCCeEEEeCCHH---HHHHHHHHHH---HHHH---HhC-CCCeEEEEeCCCC-CcEE
Confidence 2222211 235689999999986 12222221110 0111222111 0000 001 2567999999964 6678
Q ss_pred EEEEECC---ceeEEEeecCCCCCCceeecCCCCcee-eee-eCCHH----HHHHHHHHHHHhCCceeE-EEEEeeCCCc
Q 002403 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVR-YPV-LLTPN----EKQMAREVCIAFRQAVCG-FDLLRCEGRS 281 (927)
Q Consensus 212 KvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r-~~v-~Lt~e----Ek~iA~k~~~afgq~VcG-fDlLRs~~~s 281 (927)
-|-++|. +++|.-.|...+ -|++ +|-+- .|. .|+++ -.++|.++++++|..=+| ||++-.++++
T Consensus 210 eVqvl~d~~G~vv~l~~recsi----qrr~--qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~ 283 (499)
T PRK08654 210 EIQILADKHGNVIHLGDRECSI----QRRH--QKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNF 283 (499)
T ss_pred EEEEEEcCCCCEEEEeeecccc----ccCc--cceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcE
Confidence 7777764 566666665321 1222 22111 121 35653 367899999999987666 9999988899
Q ss_pred EEEecCC
Q 002403 282 YVCDVNG 288 (927)
Q Consensus 282 yV~DVNG 288 (927)
||+|||.
T Consensus 284 yflEiNp 290 (499)
T PRK08654 284 YFLEMNT 290 (499)
T ss_pred EEEEEEC
Confidence 9999995
No 49
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=98.88 E-value=2.4e-10 Score=133.98 Aligned_cols=66 Identities=42% Similarity=0.712 Sum_probs=58.2
Q ss_pred CccccccccCccccCCCCCccceeeEEEeecchhHHHHHHHHHhcCCccccccccchhhhhhhhhhcCCCCCcccccceE
Q 002403 836 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 915 (927)
Q Consensus 836 ~~~e~~~rL~p~ya~V~SP~RhVRTRlYFTSESHIhSLLNvlr~~~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf 915 (927)
..+|+.+||+|.| .||.||||||||||||||+|||+ ++||| + +.+.||||++|+++
T Consensus 780 ~~~et~~~~~p~~---~sp~~~~r~~lY~~sk~~v~sl~-~~ryG-~-------------------~~~~~ln~~~~t~~ 835 (1018)
T KOG1057|consen 780 ESAETKNRLNPVY---LSPRRHVRTRLYFTSKSHVHSLL-LRRYG-I-------------------SDVEKLNDGLLTSI 835 (1018)
T ss_pred cchhhhcccCccc---cChhHHHHHHHhhhhHhhhhhhh-hhhcC-C-------------------chhhhhcccchhce
Confidence 3568999999999 59999999999999999999999 99999 2 35689999999999
Q ss_pred EEeecCCCCC
Q 002403 916 RMFENTAVRI 925 (927)
Q Consensus 916 ~lyE~~~~~~ 925 (927)
||||....++
T Consensus 836 ~L~~~~~~d~ 845 (1018)
T KOG1057|consen 836 RLYEQILNDP 845 (1018)
T ss_pred eechhhccCC
Confidence 9999865543
No 50
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.88 E-value=1e-08 Score=116.33 Aligned_cols=210 Identities=11% Similarity=0.095 Sum_probs=116.9
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++.++- ++. ..+...++..+. +.-++.++..+++||....+.|.++|||+|++....... .+
T Consensus 74 ~id~I~p~~~~-~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~----------~~ 142 (450)
T PRK06111 74 GAEAIHPGYGL-LSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLED----------AE 142 (450)
T ss_pred CCCEEEeCCCc-cccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCC----------HH
Confidence 34778776421 111 123455566664 456889999999999999999999999999873221110 11
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+..... ..++.|+|+||.+|. -+++++.....+ ....++....... ....++.+|+||||.- +..+-
T Consensus 143 e~~~~~-~~~~~P~VvKP~~g~gs~Gv~iv~~~~e---l~~a~~~~~~~~~-------~~~~~~~~lvEe~i~g-~~e~~ 210 (450)
T PRK06111 143 EAIAIA-RQIGYPVMLKASAGGGGIGMQLVETEQE---LTKAFESNKKRAA-------NFFGNGEMYIEKYIED-PRHIE 210 (450)
T ss_pred HHHHHH-HHhCCCEEEEeCCCCCCceEEEECCHHH---HHHHHHHHHHHHH-------HhcCCCcEEEEcccCC-CcEEE
Confidence 221111 135689999999985 244444433221 2223332210000 0012457999999973 34555
Q ss_pred EEEEC---CceeEEEeecCCCCCCceeecCCCCcee-eeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCC-cEEEec
Q 002403 213 VYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDV 286 (927)
Q Consensus 213 vytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r-~~v~Lt~eEk~iA~k~~~afgq-~VcGfDlLRs~~~-syV~DV 286 (927)
+-+++ ++.++.-.|..++.... ..-....... ..-.+..+-+++|.++++++|. .++.||++.+.++ +||+||
T Consensus 211 v~v~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEi 289 (450)
T PRK06111 211 IQLLADTHGNTVYLWERECSVQRRH-QKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEM 289 (450)
T ss_pred EEEEEcCCCCEEEEEeecccccccc-cceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEE
Confidence 54443 33444434433211100 0000000000 0011223456789999999998 5777999988776 999999
Q ss_pred CCc
Q 002403 287 NGW 289 (927)
Q Consensus 287 NGw 289 (927)
|.=
T Consensus 290 N~R 292 (450)
T PRK06111 290 NTR 292 (450)
T ss_pred ECC
Confidence 954
No 51
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.86 E-value=9.3e-09 Score=117.71 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=124.5
Q ss_pred cCeeeccccCCCchH-HHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE-EEeccCCCcccccccccc
Q 002403 57 CDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~-~~~r~~p~~~~~~~~e~~ 133 (927)
+|.+|+... -||. .....++..+..+ ..+.++-.+.+||....+.|.++|||+|++. .+... +
T Consensus 66 id~Vi~~~d--~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~------------~ 131 (435)
T PRK06395 66 VDIVFVGPD--PVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE------------K 131 (435)
T ss_pred CCEEEECCC--hHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh------------H
Confidence 788888643 3553 3355666667555 4889999999999999999999999998665 44321 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
+..... ..++.|+|+||..+. .|-|+........+....++.-......++.+|+||||.-.=-.|=+
T Consensus 132 e~~~~~-~~~~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd~ 199 (435)
T PRK06395 132 DAARDY-ITSMKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQA 199 (435)
T ss_pred HHHHHH-HhhCCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEEE
Confidence 111111 112579999999987 56676422211111111111000011335679999999644356666
Q ss_pred EEECCceeEE-Eeec-CCCCCCceeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhCC------ceeEEEEEe
Q 002403 214 YTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLLR 276 (927)
Q Consensus 214 ytVG~~~vhA-e~Rk-SPv~dG~vrrN~~gke~r~-----~v~Lt~eEk----~iA~k~~~afgq------~VcGfDlLR 276 (927)
|+-|..+..- ..+. =.+.||++--|+.|=+.-. +-.|++++. +++.+++++++. .+..++++-
T Consensus 200 ~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~l 279 (435)
T PRK06395 200 FSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMD 279 (435)
T ss_pred EEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEE
Confidence 7766664221 1110 1123666555654433211 112776554 677788899993 456789999
Q ss_pred eCCCcEEEecC
Q 002403 277 CEGRSYVCDVN 287 (927)
Q Consensus 277 s~~~syV~DVN 287 (927)
+.+||||+|+|
T Consensus 280 t~~gp~ViE~n 290 (435)
T PRK06395 280 TPNGVKVIEIN 290 (435)
T ss_pred eCCCcEEEEEe
Confidence 99999999999
No 52
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.84 E-value=4.7e-09 Score=104.53 Aligned_cols=149 Identities=25% Similarity=0.318 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHH
Q 002403 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (927)
Q Consensus 94 l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (927)
+.||+++++.|+++|||+|.++...... . . .+|+|+||..|. -|.|. +
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~---------------~-~----~~~~viKp~~G~-----------Gg~~i-~ 48 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE---------------P-I----DGPWVIKPRDGA-----------GGEGI-R 48 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS-------------------B
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc---------------c-c----CCcEEEEeCCCC-----------CCCCe-E
Confidence 4699999999999999999555443210 0 1 369999999997 33343 2
Q ss_pred HHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeecCCCC-CCceeecCCCCceeeeee
Q 002403 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVV-DGVVMRNPDGKEVRYPVL 249 (927)
Q Consensus 174 Lfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~---~vhAe~RkSPv~-dG~vrrN~~gke~r~~v~ 249 (927)
.++.- ..... . .....|+||||+ |+-.-+.++... .+-+..|+-=.. ++.++.+ |+-......
T Consensus 49 ~~~~~----~~~~~---~--~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~--G~~~~~~~~ 115 (161)
T PF02655_consen 49 IVDSE----DELEE---F--LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYC--GGIVPADTP 115 (161)
T ss_dssp --SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEE--EEEES----
T ss_pred EECCc----hhhcc---c--cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceeeec--ccccccCCc
Confidence 33322 11111 0 111129999997 555555544432 344555553100 1112211 222222223
Q ss_pred CCHHHHHHHHHHHHHh-CC-ceeEEEEEeeCCCcEEEecC
Q 002403 250 LTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 287 (927)
Q Consensus 250 Lt~eEk~iA~k~~~af-gq-~VcGfDlLRs~~~syV~DVN 287 (927)
..++-.++|.+++++| |+ ..+|||++.+.+++||+|||
T Consensus 116 ~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 116 LKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 4667778999999999 75 69999999999999999999
No 53
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.77 E-value=2.1e-08 Score=114.56 Aligned_cols=199 Identities=19% Similarity=0.267 Sum_probs=113.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~ 130 (927)
.||+++|-+ ||-- ....+.++..+ ||+.++.++..+++||....++|+++|||+|++. .+..
T Consensus 74 ~id~I~pg~--g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~----------- 140 (449)
T TIGR00514 74 GADAIHPGY--GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVED----------- 140 (449)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCC-----------
Confidence 689999866 2211 11233455666 4677999999999999999999999999998865 2321
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccc---cccccccCcceEEeeccCCC
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTG 207 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~---~~~~~r~~gsyIyeEFi~~~ 207 (927)
.++..... ..++.|+|+||++|. .|-|+. +++....-...+.- .......++.+|+||||+.
T Consensus 141 -~~e~~~~~-~~ig~PvvvKP~~g~-----------gs~Gv~-~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g- 205 (449)
T TIGR00514 141 -EEENVRIA-KRIGYPVIIKATAGG-----------GGRGMR-VVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN- 205 (449)
T ss_pred -HHHHHHHH-HHhCCCEEEEeCCCC-----------CCCccE-EECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-
Confidence 12222111 235689999999986 233332 11111000000000 0000012456999999953
Q ss_pred CceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee
Q 002403 208 GTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC 277 (927)
Q Consensus 208 G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~--r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs 277 (927)
++.+-|-+++ ++.++...|-. .+.+. +.+-. .-+..|++ +-+++|.++++++|.. ++.||++-+
T Consensus 206 ~~e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~ 279 (449)
T TIGR00514 206 PRHVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLD 279 (449)
T ss_pred CeEEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEe
Confidence 5556554444 34444432211 11110 11111 11124555 4456789999999974 456999987
Q ss_pred -CCCcEEEecCC
Q 002403 278 -EGRSYVCDVNG 288 (927)
Q Consensus 278 -~~~syV~DVNG 288 (927)
+|.+||+|||.
T Consensus 280 ~~g~~~viEiNp 291 (449)
T TIGR00514 280 KNGEFYFMEMNT 291 (449)
T ss_pred CCCCEEEEEEEC
Confidence 56789999993
No 54
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.76 E-value=1.4e-08 Score=127.73 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=120.9
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEe-ccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVN-REVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~-r~~p~~~~~~~~e 131 (927)
.+|+++|-|+ |-- ....+.++..+ +|+-++.++..+++||..+.+++.++|||+|+..... .+
T Consensus 74 ~iDaI~PGyG--flsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~----------- 140 (1143)
T TIGR01235 74 GVDAIHPGYG--FLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET----------- 140 (1143)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC-----------
Confidence 4688888653 321 12234445555 5667889999999999999999999999999865321 11
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCCCC
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~---~~r~~gsyIyeEFi~~~G 208 (927)
.++.... ...+++|+|+||..|. -|.|++ .++....-...+.--.. ..-.++.+++|+||+ ++
T Consensus 141 ~eea~~~-ae~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~ 206 (1143)
T TIGR01235 141 MEEVLDF-AAAIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RP 206 (1143)
T ss_pred HHHHHHH-HHHcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CC
Confidence 1222211 1235689999999886 233332 22211100000000000 001246789999995 36
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC-C
Q 002403 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE-G 279 (927)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~-~ 279 (927)
..|.|-++|. +++|...|-+.+. ||+..--+..-...|++ +-.++|.++++++|.. ++.||++... |
T Consensus 207 reIeVqVlgD~~G~vv~l~eRdcsvq----rr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg 282 (1143)
T TIGR01235 207 RHIEVQLLGDKHGNVVHLFERDCSVQ----RRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDG 282 (1143)
T ss_pred eEEEEEEEEeCCCCEEEEEecccccc----ccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCC
Confidence 7888888865 4677777754211 12211112221124555 4557899999999954 6669999874 5
Q ss_pred CcEEEecCC
Q 002403 280 RSYVCDVNG 288 (927)
Q Consensus 280 ~syV~DVNG 288 (927)
++||+|||-
T Consensus 283 ~~yfIEVNP 291 (1143)
T TIGR01235 283 KFYFIEVNP 291 (1143)
T ss_pred cEEEEEeec
Confidence 799999993
No 55
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.76 E-value=2.7e-08 Score=108.25 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=121.4
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 002403 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (927)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (927)
|+-..-.++.||....+++.+.|||+|+.++..... -.........++....-...-..+||+||..|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 888899999999999999999999999955522210 000000011122222111111269999999997
Q ss_pred CCCChHHHHHhhcCCCccccccccc----ccccCc--ceEEeeccCC---------CC-ceeEEEEE----CCceeEEEe
Q 002403 166 SAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 225 (927)
Q Consensus 166 ~~GgG~~rLfrki~n~sS~~~~~~~----~~r~~g--syIyeEFi~~---------~G-~DIKvytV----G~~~vhAe~ 225 (927)
.|.|+. ++...+. ..+..+.. .....+ .||+||||.- .+ -+|||.|+ ++.+++|+.
T Consensus 85 -~G~Gi~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGIL-VIDRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEE-EEEeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 555553 2221110 11111111 111222 8999999863 12 68999999 346789999
Q ss_pred ecCCCCCCceeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-CCcee
Q 002403 226 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 270 (927)
Q Consensus 226 RkSPv~dG~vrrN~~gke~r~~v~Lt----------------------------------~eEk~iA~k~~~af-gq~Vc 270 (927)
|-+. .|...-|.|.|++..+|-+. ++-.++|.++++.| ++.+.
T Consensus 161 Rlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 9984 77777888877765544331 34567888998877 67999
Q ss_pred EEEEEeeCCCcEEEecCCc
Q 002403 271 GFDLLRCEGRSYVCDVNGW 289 (927)
Q Consensus 271 GfDlLRs~~~syV~DVNGw 289 (927)
|.|+.=+.+||+++|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999888999999965
No 56
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.74 E-value=1.7e-07 Score=114.69 Aligned_cols=209 Identities=16% Similarity=0.208 Sum_probs=128.4
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++.+-..-++-. -....++++.+ ||+=.+..+..++.||..+-++|+++|||+|++..+.+..- ..+.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~------~~~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGW------KREPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhc------ccChH
Confidence 478776654322223 25677888888 56677999999999999999999999999999988865210 00011
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIK 212 (927)
..+.-.-..++.|+|+||..+- .+.|+. ++.|.. ++..-+. ....+..+|+|||+.. |+.+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~i~~-grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLG-----------SSIGVF----EVHNVE-ELRDKISEAFLYDTDVFVEESRLG-SREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeccCC-CEEEE
Confidence 1111001235689999999974 233332 122111 1111111 1223556899999863 89999
Q ss_pred EEEECCce---eEE--EeecCCCCCCc--eeecC--CCC---ceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEE
Q 002403 213 VYTVGPEY---AHA--EARKSPVVDGV--VMRNP--DGK---EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (927)
Q Consensus 213 vytVG~~~---vhA--e~RkSPv~dG~--vrrN~--~gk---e~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlL 275 (927)
|-++|... +.+ ..+.. ..+- +..+- +|+ .+.+|..|++ +-+++|.++.+++|. .+|.||++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998752 111 22222 1121 11222 233 2335667775 456788999999995 47789999
Q ss_pred eeC-CCcEEEecCCc
Q 002403 276 RCE-GRSYVCDVNGW 289 (927)
Q Consensus 276 Rs~-~~syV~DVNGw 289 (927)
-+. |.+||+|||--
T Consensus 741 v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 741 LDEEGNFWLSEMNPI 755 (809)
T ss_pred EcCCCCEEEEEeeCC
Confidence 874 66999999933
No 57
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.73 E-value=8.7e-08 Score=106.51 Aligned_cols=197 Identities=21% Similarity=0.246 Sum_probs=146.0
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCccc--CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV--NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i--Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|+++|.+..-+ |.+-.+-|+..|.-++ =+.++..++.||.+.|+.++++|||+|.+..+..- ..|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 5788888888777 8888888999987654 46889999999999999999999999999998762 1122222
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc------------ccCcceEEe
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 201 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~------------r~~gsyIye 201 (927)
..+... ++|+.+||..|. -|-|.++|-+....-...+.|+...+ ..--.+|+.
T Consensus 139 ~~l~~~----~~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFP----GQPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCC----CceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 223333 368999999998 34444433333322233344433321 135679999
Q ss_pred eccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEe-eCC
Q 002403 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 279 (927)
Q Consensus 202 EFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afgq~-VcGfDlLR-s~~ 279 (927)
||++-.=--|=|.+-++++++|-.|+= . |.+..+.-.++--++|.++|++||++ +.+|.+-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K---~----------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRK---L----------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEe---c----------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 999986556667777789998888865 1 26667788899999999999999996 67899988 688
Q ss_pred CcEEEecC
Q 002403 280 RSYVCDVN 287 (927)
Q Consensus 280 ~syV~DVN 287 (927)
+|+++|+|
T Consensus 271 ~p~LLEIN 278 (329)
T PF15632_consen 271 NPKLLEIN 278 (329)
T ss_pred CEEEEEeC
Confidence 89999999
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.72 E-value=5e-08 Score=122.60 Aligned_cols=196 Identities=13% Similarity=0.179 Sum_probs=124.0
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|.+|+-++...+. ++..-++..+ |+.-++.++...+.||.+..++|+++|||+|++..+.. .++
T Consensus 630 ~~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s------------~ee 696 (1068)
T PRK12815 630 NIKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATD------------EEE 696 (1068)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCC------------HHH
Confidence 378888877665433 2222334455 45568899999999999999999999999999998875 223
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
..... ..+++|+|+||..|. ..+++|.+... .....++.. ...++.+|+||||.-.--+|-+
T Consensus 697 ~~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 697 AFAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEE
Confidence 32211 235689999999874 23333333211 111122211 1235679999999534455555
Q ss_pred EEECCceeE-E-EeecCCCCCCceeecCCCCcee---eeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 002403 214 YTVGPEYAH-A-EARKSPVVDGVVMRNPDGKEVR---YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (927)
Q Consensus 214 ytVG~~~vh-A-e~RkSPv~dG~vrrN~~gke~r---~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~~~syV 283 (927)
++=|..++. + +.+.. +...|.|... .|..|++ +-+++|.++++++|. .++.||++..++++||
T Consensus 760 i~dg~~v~i~~i~e~~e-------~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yv 832 (1068)
T PRK12815 760 ISDGEDVTIPGIIEHIE-------QAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYV 832 (1068)
T ss_pred EEcCCceEEeeEEEEee-------ccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEE
Confidence 555554322 2 22211 1223545432 2456775 456788999999984 4777999999999999
Q ss_pred EecCC
Q 002403 284 CDVNG 288 (927)
Q Consensus 284 ~DVNG 288 (927)
+|||-
T Consensus 833 iEiNp 837 (1068)
T PRK12815 833 LEVNP 837 (1068)
T ss_pred EEEeC
Confidence 99994
No 59
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.70 E-value=6.9e-08 Score=114.30 Aligned_cols=199 Identities=16% Similarity=0.194 Sum_probs=123.1
Q ss_pred cCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002403 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (927)
||++ ++-....+.+ ++++++..++.+.++.++..+++||...-+.|+++|||+|++..+... ++..
T Consensus 84 ~dvI-t~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~------------~el~ 149 (577)
T PLN02948 84 CDVL-TVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDL------------ESAE 149 (577)
T ss_pred CCEE-EEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCH------------HHHH
Confidence 5654 4444455543 458888888767799999999999999999999999999999888641 1111
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 002403 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (927)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvy 214 (927)
.. ...+++|+|+||..|. -.++++-..... ....++... ..+..+|+|+||+ ....+-|.
T Consensus 150 ~~-~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~e---L~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 150 KA-GDLFGYPLMLKSRRLAYDGRGNAVAKTEED---LSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred HH-HHhcCCcEEEEeCCCCCCCCCeEEECCHHH---HHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 11 1235689999999753 344444332221 222222221 1234689999994 24677777
Q ss_pred EECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCC-cEEEecCC
Q 002403 215 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVNG 288 (927)
Q Consensus 215 tVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~~~-syV~DVNG 288 (927)
+++.. ..+..--|+++.. .+|........|..|++ +-+++|.++++++|.. ++.+|++-+.+| .||+|||.
T Consensus 212 v~r~~--~G~i~~~p~~E~~-~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInp 288 (577)
T PLN02948 212 VARSR--DGSTRCYPVVETI-HKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAP 288 (577)
T ss_pred EEECC--CCCEEEecCcccE-EECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeC
Confidence 77421 0011113543222 22211112235666776 4567789999999743 557899888665 68999994
Q ss_pred cc
Q 002403 289 WS 290 (927)
Q Consensus 289 wS 290 (927)
-.
T Consensus 289 Rp 290 (577)
T PLN02948 289 RP 290 (577)
T ss_pred CC
Confidence 43
No 60
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.69 E-value=1e-07 Score=109.31 Aligned_cols=194 Identities=18% Similarity=0.190 Sum_probs=115.3
Q ss_pred CCch-HHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc
Q 002403 67 GYPL-EKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (927)
Q Consensus 67 gfpl-~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~ 144 (927)
-+|+ ....++++..+.. .-.+..+..+.+||..+-++|+++|||+|++..+... . +...++. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~--~-------e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP--A-------AAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHHHHH----HcC
Confidence 3555 4566777777654 4578889999999999999999999999998877541 0 1122222 245
Q ss_pred CcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccc--ccc-ccCcceEEeeccCCCCceeEEEEE--CCc
Q 002403 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDVKVYTV--GPE 219 (927)
Q Consensus 145 kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~--~~~-r~~gsyIyeEFi~~~G~DIKvytV--G~~ 219 (927)
.|+|+||..|. .|-|+. +.+........+..-. ..+ ..+..+|+||||. |..+-|.++ |..
T Consensus 138 ~PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 138 APIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGEN 203 (434)
T ss_pred CCEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCc
Confidence 79999999764 333432 2221110000000000 011 1245799999997 556665443 323
Q ss_pred eeEE-E-eecCCCCCCceeecCCCCceeeeee-CCHHHHH-HHHH-------HHHHhCCceeE---EEEEee--CCCcEE
Q 002403 220 YAHA-E-ARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-MARE-------VCIAFRQAVCG---FDLLRC--EGRSYV 283 (927)
Q Consensus 220 ~vhA-e-~RkSPv~dG~vrrN~~gke~r~~v~-Lt~eEk~-iA~k-------~~~afgq~VcG---fDlLRs--~~~syV 283 (927)
+..- + ...-.+.||+..-|+.|-+.-.|.. ++++..+ ++.. +.++.|....| +|++-+ +|++||
T Consensus 204 ~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~v 283 (434)
T PLN02257 204 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKL 283 (434)
T ss_pred EEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEE
Confidence 3221 1 1233456898888887655444553 7775444 3333 33466766555 677665 466999
Q ss_pred EecC
Q 002403 284 CDVN 287 (927)
Q Consensus 284 ~DVN 287 (927)
+|+|
T Consensus 284 LE~N 287 (434)
T PLN02257 284 LEYN 287 (434)
T ss_pred EEEE
Confidence 9999
No 61
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.66 E-value=5.6e-08 Score=112.02 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=117.8
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~ 130 (927)
.+|+++|.|+ |-- ....+.++..+ +|+-++.++..+++||....++|.++|||+|++. .+..
T Consensus 77 ~~daI~pg~g--~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~----------- 143 (467)
T PRK12833 77 GADAIHPGYG--FLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS----------- 143 (467)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC-----------
Confidence 4688988662 311 12233444555 5788899999999999999999999999998875 3322
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~D 210 (927)
.++.... ...++.|+|+||+.|. -+..++.-.+.- .....|+... ++-. ..+ .++.+++|+||+. |+.
T Consensus 144 -~~e~~~~-~~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEV-AARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 1222221 1235689999999986 122222211110 0111121110 0000 011 2567899999976 677
Q ss_pred eEEEEECCc--eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC--CCc
Q 002403 211 VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GRS 281 (927)
Q Consensus 211 IKvytVG~~--~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~--~~s 281 (927)
|-|-++|+. ++|.-.|..-+ . |++..--+..-+..|++ +-+++|.++++++|.. ++.||++-.. |.+
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~~-~---r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~ 287 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECSL-Q---RRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEF 287 (467)
T ss_pred EEEEEEeCCCcEEEEEEeeccc-c---cCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCE
Confidence 777777653 45554443211 0 11100000011123554 5567899999999975 3458998763 568
Q ss_pred EEEecCCc
Q 002403 282 YVCDVNGW 289 (927)
Q Consensus 282 yV~DVNGw 289 (927)
||+|||.=
T Consensus 288 ~~iEvNpR 295 (467)
T PRK12833 288 YFIEMNTR 295 (467)
T ss_pred EEEEEECC
Confidence 99999953
No 62
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.61 E-value=9.6e-08 Score=120.56 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=118.2
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE--EeccCCCccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~--~~r~~p~~~~~~~~ 130 (927)
.+|++++.| ||-- ....+.++..+ +|+-++.++..+++||....++|.++|||+|+... +..
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s----------- 144 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDD----------- 144 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCC-----------
Confidence 478899865 3321 12223334455 46778999999999999999999999999977653 222
Q ss_pred cccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~ 209 (927)
.++.... ...++.|+|+||..|. ..++.+..... -....|+... ++ . .....++.+++|+||+. ++
T Consensus 145 -~eea~~~-a~~iGyPvVVKP~~GgGGrGv~vV~~~e---EL~~a~~~a~---~e-a---~~~fg~~~vlVEefI~g-~~ 211 (1146)
T PRK12999 145 -IEEALEF-AEEIGYPIMLKASAGGGGRGMRIVRSEE---ELEEAFERAK---RE-A---KAAFGNDEVYLEKYVEN-PR 211 (1146)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCCCCCCeEEeCCHH---HHHHHHHHHH---HH-H---HhhcCCCcEEEecCCCC-Ce
Confidence 1222221 1235689999999986 12222221110 0111122110 00 0 00012567999999974 56
Q ss_pred eeEEEEEC---CceeEEEeecCCCCCCceeecCCCC--ceeeeeeCCHH----HHHHHHHHHHHhCCce-eEEEEEeeCC
Q 002403 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPN----EKQMAREVCIAFRQAV-CGFDLLRCEG 279 (927)
Q Consensus 210 DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gk--e~r~~v~Lt~e----Ek~iA~k~~~afgq~V-cGfDlLRs~~ 279 (927)
.|-|-++| ++++|--.|-..+ .|| |.+ |..-...|+++ -.++|.++++++|..= +.+|++.+.+
T Consensus 212 ~ieVqvl~D~~G~vv~l~erdcsv----qrr--~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d 285 (1146)
T PRK12999 212 HIEVQILGDKHGNVVHLYERDCSV----QRR--HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD 285 (1146)
T ss_pred EEEEEEEEECCCCEEEEEccccce----eec--CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC
Confidence 67776665 4566655553321 122 222 22111256654 3558999999999854 4499998754
Q ss_pred -CcEEEecCC
Q 002403 280 -RSYVCDVNG 288 (927)
Q Consensus 280 -~syV~DVNG 288 (927)
++|++|||-
T Consensus 286 g~~yfIEINp 295 (1146)
T PRK12999 286 GNFYFIEVNP 295 (1146)
T ss_pred CCEEEEEEEC
Confidence 799999994
No 63
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.60 E-value=4.8e-08 Score=101.39 Aligned_cols=159 Identities=21% Similarity=0.303 Sum_probs=98.5
Q ss_pred HHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCC
Q 002403 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (927)
Q Consensus 103 iL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrki~n~ 181 (927)
+|+++|||||+++++.+.. ...+.+.-.-..++.|+|+||..+ +-.+|.+ -.+ ...|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~---------~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~----~~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNE---------DDSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHN----EEELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTS---------HHHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESS----HHHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEeccc---------ccchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCC----HHHHHHHHHH-
Confidence 5889999999999999831 011111111224678999999986 4333332 111 1123332211
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeecCCCCCCceee------cCCCCceeeeeeCCH
Q 002403 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMR------NPDGKEVRYPVLLTP 252 (927)
Q Consensus 182 sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG---~~~vhAe~RkSPv~dG~vrr------N~~gke~r~~v~Lt~ 252 (927)
..+-+..+|+|||| .|+++-|-++| ..+...+....+ ++-+.- +-.......|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12345679999999 79999999999 666666666664 333321 113334455666765
Q ss_pred ----HHHHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEecCCcc
Q 002403 253 ----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWS 290 (927)
Q Consensus 253 ----eEk~iA~k~~~afgq-~VcGfDlLRs-~~~syV~DVNGwS 290 (927)
+-+++|.+|.+++|. .+|=||+.=+ +|.+||+|||.-+
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~P 175 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIP 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcc
Confidence 456789999999997 8999999877 6679999999654
No 64
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.57 E-value=2e-07 Score=117.33 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=120.1
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~ 129 (927)
.+|++|+.++....+.-++ ..++..+ ++.-.+..+..+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 152 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM--------- 152 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH---------
Confidence 5799999877554443222 1355666 455689999999999999999999999999999988751
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 002403 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G 208 (927)
++.... -..++.|+|+||..|. ..++++...... ...+++.. + .....+.+|+||||+-.
T Consensus 153 ---~e~~~~-~~~ig~PvVVKP~~g~gg~Gv~iv~~~ee---L~~a~~~~------~-----~~s~~~~vlvEe~I~G~- 213 (1066)
T PRK05294 153 ---EEALEV-AEEIGYPVIIRPSFTLGGTGGGIAYNEEE---LEEIVERG------L-----DLSPVTEVLIEESLLGW- 213 (1066)
T ss_pred ---HHHHHH-HHHcCCCeEEEcCCCCCCCCeEEECCHHH---HHHHHHHH------H-----hhCCCCeEEEEEcccCc-
Confidence 222111 1234589999999875 122222221110 11111100 0 01124579999999631
Q ss_pred ceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCCc--eeEEEE
Q 002403 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGFDL 274 (927)
Q Consensus 209 ~DIKvytVG~---~~v--hAe~RkSPv~dG~vrrN~~gke~r--~~v-~Lt~eE----k~iA~k~~~afgq~--VcGfDl 274 (927)
..+-+-++.+ +.+ ..+.+..| .| .|.|++. .|. .|++++ +++|.++++++|.. +|.||+
T Consensus 214 ~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef 286 (1066)
T PRK05294 214 KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQF 286 (1066)
T ss_pred eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEE
Confidence 2333333321 111 12333333 12 3444442 233 577644 58999999999997 999999
Q ss_pred Eee-C-CCcEEEecC
Q 002403 275 LRC-E-GRSYVCDVN 287 (927)
Q Consensus 275 LRs-~-~~syV~DVN 287 (927)
.-+ . |..||+|||
T Consensus 287 ~~~~~~g~~~viEiN 301 (1066)
T PRK05294 287 ALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEECCCCcEEEEEee
Confidence 987 3 558999999
No 65
>PLN02735 carbamoyl-phosphate synthase
Probab=98.54 E-value=5.8e-07 Score=113.43 Aligned_cols=199 Identities=14% Similarity=0.215 Sum_probs=123.8
Q ss_pred CcCeeeccccCCCchHHH---HHHHHhc----------CCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCC
Q 002403 56 ICDCLIAFYSSGYPLEKA---ESYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka---i~y~~lr----------~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p 122 (927)
.+|++|+-|+...|+.-| .+++... =++...+.++..++.||.+.-++|+++|||+|++..+..
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s--- 725 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARS--- 725 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCC---
Confidence 478999999877776322 2222222 246788999999999999999999999999999987754
Q ss_pred CccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEe
Q 002403 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 201 (927)
Q Consensus 123 ~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIye 201 (927)
.++...+. ..++.|+|+||..|. ..++.|.+...+ ....++... ....++.+|+|
T Consensus 726 ---------~eea~~~a-~~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a~-----------~~~~~~~vlVE 781 (1102)
T PLN02735 726 ---------EADALAIA-KRIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETAV-----------EVDPERPVLVD 781 (1102)
T ss_pred ---------HHHHHHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHHH-----------HhcCCCCEEEE
Confidence 12222211 235789999999874 222222222110 111111110 11235579999
Q ss_pred eccCCCCceeEEEEECC---ceeE--EEeecCCCCCCceeecCCCCceeeee---eCCHHH----HHHHHHHHHHhCC-c
Q 002403 202 EFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-A 268 (927)
Q Consensus 202 EFi~~~G~DIKvytVG~---~~vh--Ae~RkSPv~dG~vrrN~~gke~r~~v---~Lt~eE----k~iA~k~~~afgq-~ 268 (927)
+||.. |.-+=|-++++ +++. .+.+.- +...|-|+....+ .|+++. +++|.++++++|. .
T Consensus 782 efI~~-g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G 853 (1102)
T PLN02735 782 KYLSD-ATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCG 853 (1102)
T ss_pred EecCC-cEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 99953 66676766653 2221 111111 1223555544333 577544 5679999999985 5
Q ss_pred eeEEEEEee-CCCcEEEecCCc
Q 002403 269 VCGFDLLRC-EGRSYVCDVNGW 289 (927)
Q Consensus 269 VcGfDlLRs-~~~syV~DVNGw 289 (927)
++.+|++-+ +|++||+|||--
T Consensus 854 ~~~vqf~v~~dg~~yviEiNpR 875 (1102)
T PLN02735 854 LMNCQYAITPSGEVYIIEANPR 875 (1102)
T ss_pred eeeEEEEEcCCCcEEEEEEeCC
Confidence 777999985 677999999943
No 66
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.51 E-value=4.1e-07 Score=94.23 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=103.5
Q ss_pred CCchhhhHhhhHHHHH----HHHHh---CCCCC-CCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 002403 86 NELEPQHLLHDRRKVY----EQLEK---YGIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (927)
Q Consensus 86 Ndl~~q~~l~DR~~~l----qiL~~---~gIp~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (927)
|+|.+.+.+.||--++ +|-.+ ...|+ +.|.+-+. .+.+.- -..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh-------------~em~s~----~~fPvVvKvG~~h-- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNH-------------REMLSA----PRFPVVVKVGHAH-- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSG-------------GGGCS-----SSSSEEEEESS-S--
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCCh-------------hhhccC----CCCCEEEEEcccc--
Confidence 8899999999993222 22223 34443 33333332 233321 1379999975554
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCcee
Q 002403 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (927)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vr 236 (927)
+|-|-. |+.|....-|-.. .+. .+.=+-.|-||.. --||||--||++| -|+.|+|. .|.|.
T Consensus 62 ---------~G~GKv----kv~n~~~~qDi~s-ll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 ---------AGMGKV----KVDNQQDFQDIAS-LLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp ---------TTTTEE----EE-SHHHHHHHHH-HHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred ---------CceeEE----EEccHHHHHHHHH-HHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 555542 4444442211100 223 3333457888855 6899999999997 89999995 99999
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeC-CCcEEEecCCccc
Q 002403 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCE-GRSYVCDVNGWSF 291 (927)
Q Consensus 237 rN~~gke~r~~v~Lt~eEk~iA~k~~~af-gq~VcGfDlLRs~-~~syV~DVNGwSF 291 (927)
+|+ |-..-+.|.+|+..|...-.+++.| |++|||+|.|-+. |+-|++||||-|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 997 4566678999999999999999999 9999999999996 5578999998754
No 67
>PLN02735 carbamoyl-phosphate synthase
Probab=98.51 E-value=4.8e-07 Score=114.17 Aligned_cols=197 Identities=12% Similarity=0.133 Sum_probs=124.8
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~ 129 (927)
.+|++|+-++...++.-++ .-++..+ |+.-++..+..++.||...-++|.++|||+|++..+...
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 168 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTL--------- 168 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCH---------
Confidence 6899999877555553222 2345666 577899999999999999999999999999999888641
Q ss_pred ccccceeeecCeecc-CcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC
Q 002403 130 IEEEDFVEVHGNRFW-KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 207 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~-kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~ 207 (927)
++....- ..++ .|+|+||..|. ..+++|-+.... ....++..- ....++.+|+||||.-
T Consensus 169 ---eea~~~~-~~iG~yPvVVKP~~~~GG~Gv~iv~n~eE---L~~a~~~a~-----------~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 169 ---DECFEIA-EDIGEFPLIIRPAFTLGGTGGGIAYNKEE---FETICKAGL-----------AASITSQVLVEKSLLG- 229 (1102)
T ss_pred ---HHHHHHH-HHhCCCCEEEEeCCCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEecCC-
Confidence 1111111 1234 79999999853 233333322110 111111110 1124667899999963
Q ss_pred CceeEEEEECC---ce--eEEEeecCCCCCCceeecCCCCceee--ee-eCCHH----HHHHHHHHHHHhCC--ceeEEE
Q 002403 208 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVRY--PV-LLTPN----EKQMAREVCIAFRQ--AVCGFD 273 (927)
Q Consensus 208 G~DIKvytVG~---~~--vhAe~RkSPv~dG~vrrN~~gke~r~--~v-~Lt~e----Ek~iA~k~~~afgq--~VcGfD 273 (927)
..-+=|=++++ +. +..+.+..| .| .|.|.... |. .|+++ -+++|.+|++++|. .+|.||
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 24555655543 22 233444444 23 24344432 44 47764 44569999999997 699999
Q ss_pred EEee--CCCcEEEecC
Q 002403 274 LLRC--EGRSYVCDVN 287 (927)
Q Consensus 274 lLRs--~~~syV~DVN 287 (927)
+.-+ +|..||+|||
T Consensus 303 f~l~~~~g~~~ViEVN 318 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMN 318 (1102)
T ss_pred EEEECCCCcEEEEEec
Confidence 9876 4668999999
No 68
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.51 E-value=3.4e-07 Score=106.25 Aligned_cols=183 Identities=15% Similarity=0.142 Sum_probs=109.0
Q ss_pred HHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEee
Q 002403 74 ESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKP 151 (927)
Q Consensus 74 i~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKp 151 (927)
.+.++..| ||+.-+..+..++.||..+.++++++|||+|++.++..+. .++... +....++.|+|+||
T Consensus 119 Q~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVVKP 188 (493)
T PRK06524 119 EALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVVQT 188 (493)
T ss_pred HHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEEEE
Confidence 33444555 5679999999999999999999999999999998764311 111111 11113678999999
Q ss_pred cccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee--EEEEECC-ceeEEEeec
Q 002403 152 VHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV--KVYTVGP-EYAHAEARK 227 (927)
Q Consensus 152 v~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DI--KvytVG~-~~vhAe~Rk 227 (927)
..|. -+++++...... ...++.++ -.+..+++|+||. |.-+ =|++-+. .+++...+.
T Consensus 189 ~~GGSS~GV~~Vkn~eE---Le~a~~~~--------------~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e 249 (493)
T PRK06524 189 PYGDSGSTTFFVRGQRD---WDKYAGGI--------------VGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTS 249 (493)
T ss_pred CCCCCCcCEEEeCCHHH---HHHHHHHh--------------cCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccc
Confidence 9874 333333332111 11111111 1124578899995 4433 2343332 222211111
Q ss_pred CCCCCCceeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhC----CceeEEEEEee--CCCcEEEecC
Q 002403 228 SPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (927)
Q Consensus 228 SPv~dG~vrrN~~gke---~r~~v~Lt~----eEk~iA~k~~~afg----q~VcGfDlLRs--~~~syV~DVN 287 (927)
++-..++. .-.+|. ...|..+++ +-+++|.+++++++ ..+++||++-. +|+.|++|||
T Consensus 250 -~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 250 -LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred -cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 11000121 011222 244778888 77789999999984 68899999998 4679999999
No 69
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.47 E-value=7.6e-07 Score=101.96 Aligned_cols=205 Identities=16% Similarity=0.174 Sum_probs=116.0
Q ss_pred cCeeeccccCCCchH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 57 CDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
+|++|+.... |+. .+...++..+..++ -+..+-.+.+||..+-++|.++|||+|++..+... .+..+
T Consensus 69 iD~Vv~g~E~--~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~ 137 (426)
T PRK13789 69 FDLIVVGPED--PLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLS 137 (426)
T ss_pred CCEEEECCch--HHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHH
Confidence 6777753333 332 23344556665433 23345668899999999999999999998776541 01222
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
++. .++.|+|+||..+. ..+|+|.....+ ....++.+-. .+.|. ..+..+|+||||. |+-+=|
T Consensus 138 ~~~----~~~~PvVVKp~~~~~gkGV~vv~~~ee---l~~a~~~~~~-~~~~g------~~~~~vlIEEfl~--G~E~Sv 201 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLAAGKGVTVATEKKM---AKRALKEIFK-DKKFG------QSGNQVVIEEFME--GQEASI 201 (426)
T ss_pred HHH----hcCCCEEEEeCCCCCCCcEEEECCHHH---HHHHHHHHHh-hcccc------CCCCeEEEEECcC--CeEEEE
Confidence 222 24579999999764 334443332211 1111111100 01010 1234799999997 455555
Q ss_pred EEE--CCceeE---EEeecCCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---C---CceeEEEEEe
Q 002403 214 YTV--GPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---R---QAVCGFDLLR 276 (927)
Q Consensus 214 ytV--G~~~vh---Ae~RkSPv~dG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~k~~~af---g---q~VcGfDlLR 276 (927)
.++ |..+.. +...| ...||+-.-|+.|=+.-.|.. ++++.. +|+.++.+++ | ..+..+|++-
T Consensus 202 ~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~i 280 (426)
T PRK13789 202 FAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMI 280 (426)
T ss_pred EEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEE
Confidence 444 333221 11111 224777666777666666765 466322 3445556555 4 4567789888
Q ss_pred eCCC-cEEEecCCc
Q 002403 277 CEGR-SYVCDVNGW 289 (927)
Q Consensus 277 s~~~-syV~DVNGw 289 (927)
+.+| +||+|+|--
T Consensus 281 t~~g~~~vlE~n~R 294 (426)
T PRK13789 281 SPEGEPKVVEFNCR 294 (426)
T ss_pred cCCCCEEEEEEecC
Confidence 8766 999999954
No 70
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=7.3e-07 Score=98.79 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=135.2
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002403 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (927)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (927)
....|++..+ ||+.....+=++.-|+..+-+++...|+|++..+...++.+ .+..++-.-..++.|+++|
T Consensus 78 ~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~---------~~~~~e~~~~~l~~p~~Vk 148 (317)
T COG1181 78 TIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEY---------SSVIVEEVEEGLGFPLFVK 148 (317)
T ss_pred hHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccc---------hhHHHHHhhcccCCCEEEE
Confidence 5678888888 99999999999999999999999999999999999998421 1111111112356999999
Q ss_pred eccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCC-
Q 002403 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP- 229 (927)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSP- 229 (927)
|...- --+.+.-.++.|-|- +..+. ..+.+...+.|+|+. |+.|.|=+.|... +++.-++
T Consensus 149 p~~~g-SSvg~~~v~~~~d~~-----------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~~ 209 (317)
T COG1181 149 PAREG-SSVGRSPVNVEGDLQ-----------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPLG 209 (317)
T ss_pred cCCcc-ceeeEEEeeeccchH-----------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcc--cceecCce
Confidence 98842 123333333333332 21221 456788889999999 9999999999865 2222221
Q ss_pred -C-CCC-ce----eecCCCCceeeee--eCCH----HHHHHHHHHHHHhC-CceeEEEEEeeC--CCcEEEecCCcc
Q 002403 230 -V-VDG-VV----MRNPDGKEVRYPV--LLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVNGWS 290 (927)
Q Consensus 230 -v-~dG-~v----rrN~~gke~r~~v--~Lt~----eEk~iA~k~~~afg-q~VcGfDlLRs~--~~syV~DVNGwS 290 (927)
+ .+| .| ..|+++|+..+.+ .||+ +-+++|.+|.+|+| ..+||+|++-.. |..|++|||--+
T Consensus 210 eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~P 286 (317)
T COG1181 210 EIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNP 286 (317)
T ss_pred EEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCC
Confidence 0 133 33 2688844433322 3665 56889999999999 999999999997 789999999543
No 71
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.46 E-value=3.1e-07 Score=98.25 Aligned_cols=167 Identities=22% Similarity=0.231 Sum_probs=123.4
Q ss_pred CcCe--eeccccCCC--ch-HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 002403 56 ICDC--LIAFYSSGY--PL-EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (927)
Q Consensus 56 ~~D~--lIsf~s~gf--pl-~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~ 130 (927)
.||+ +|+--++|. .| ..+-+|++..|+ +..+.+.+-|||++|..|..+ +++|.|...-. .
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~-~--------- 137 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWAE-E--------- 137 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-C---------
Confidence 4664 444444552 23 345667777765 568999999999999999999 99999985321 1
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC----
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---- 206 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~---- 206 (927)
.+-+|+||.+|. +|.|.. | +.-.| ++ .|.||||+-
T Consensus 138 -------------~~k~ViKp~dgC-----------gge~i~--~-------~~~~p-------d~-~i~qEfIeG~~lS 176 (307)
T COG1821 138 -------------PKKYVIKPADGC-----------GGEGIL--F-------GRDFP-------DI-EIAQEFIEGEHLS 176 (307)
T ss_pred -------------CceEEecccccC-----------Ccceee--c-------cCCCc-------ch-hhHHHhcCCcceE
Confidence 246999999997 555542 2 11122 22 788999974
Q ss_pred ----CCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhC--CceeEEEEEeeCCC
Q 002403 207 ----GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGR 280 (927)
Q Consensus 207 ----~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afg--q~VcGfDlLRs~~~ 280 (927)
.|+++.+.+|..+++.- +..+.--.||..+++.+|..+-.++|+++.+-++ -...||||+-+ +.
T Consensus 177 VSL~~GEkv~pLsvNrQfi~~---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~ 246 (307)
T COG1821 177 VSLSVGEKVLPLSVNRQFIIF---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE 246 (307)
T ss_pred EEEecCCccccceechhhhhh---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC
Confidence 47777777776664432 4455666789999999999999999999999998 35789999999 99
Q ss_pred cEEEecCC
Q 002403 281 SYVCDVNG 288 (927)
Q Consensus 281 syV~DVNG 288 (927)
|||+|||-
T Consensus 247 pYvIEINp 254 (307)
T COG1821 247 PYVIEINP 254 (307)
T ss_pred cEEEEecC
Confidence 99999993
No 72
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.44 E-value=8.1e-07 Score=111.75 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=119.6
Q ss_pred CcCeeeccccCCCchHHH-----HHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002403 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka-----i~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~ 129 (927)
.+|++++.++-..++.-+ ..-++..|. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 151 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSV--------- 151 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCH---------
Confidence 579999988754444211 224556674 55689999999999999999999999999999888651
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-cc--ccCcceEEeeccCC
Q 002403 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 206 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~--r~~gsyIyeEFi~~ 206 (927)
++.... ...++.|+|+||..|. .|.|+. + +.|.. ++..-+. .. ...+.+|+||||+-
T Consensus 152 ---~e~~~~-~~~igyPvIVKP~~g~-----------gg~Gv~-i---v~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 152 ---EEALAA-AKEIGYPVIVRPAFTL-----------GGTGGG-I---AYNRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred ---HHHHHH-HHHhCCCeEEECCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 222221 1235689999999875 233332 1 21111 1110000 01 12257899999973
Q ss_pred CCceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCce--eeee-eCCHHH----HHHHHHHHHHhCCc-eeEEE
Q 002403 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNE----KQMAREVCIAFRQA-VCGFD 273 (927)
Q Consensus 207 ~G~DIKvytVG~---~~v--hAe~RkSPv~dG~vrrN~~gke~--r~~v-~Lt~eE----k~iA~k~~~afgq~-VcGfD 273 (927)
...+=+-+++. +.+ ..+.+--| .| .|-|++ -.|. .|++++ +++|.++++++|.. +|.||
T Consensus 212 -~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 -WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred -ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 13333333321 222 22344344 22 233333 2243 377654 46889999999974 78999
Q ss_pred EEee--CCCcEEEecCC
Q 002403 274 LLRC--EGRSYVCDVNG 288 (927)
Q Consensus 274 lLRs--~~~syV~DVNG 288 (927)
+.-+ +++.||+|||.
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 9887 35689999993
No 73
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.34 E-value=1.5e-06 Score=110.48 Aligned_cols=204 Identities=16% Similarity=0.146 Sum_probs=117.5
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCC-EEEEeccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~-t~~~~r~~p~~~~~~~~e 131 (927)
.+|++|+.|+ |-- ....+.++..+ +|+-++.++..+++||....++|+++|||+|. +.++..
T Consensus 73 ~idaIiPG~g--flsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s------------ 138 (1201)
T TIGR02712 73 GAQAIHPGYG--FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSS------------ 138 (1201)
T ss_pred CCCEEEeCCc--ccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCC------------
Confidence 4678887653 311 22345666777 46778999999999999999999999999866 544432
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~D 210 (927)
.++..... ..++.|+|+||..|. ..++.+..... -....|+.+.+.+.. .+ .+..+|+||||.. |.-
T Consensus 139 ~dea~~~a-~~igyPvVVKP~~ggGG~GV~iv~~~e---EL~~a~~~~~~~~~~------~f-~~~~vlVEefI~g-~~e 206 (1201)
T TIGR02712 139 LDEALEAA-KEIGYPVMLKSTAGGGGIGMQKCDSAA---ELAEAFETVKRLGES------FF-GDAGVFLERFVEN-ARH 206 (1201)
T ss_pred HHHHHHHH-HhcCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHHHH------hc-CCCcEEEEecCCC-CEE
Confidence 12222211 235689999999985 12232222111 112233332111100 00 1345899999974 566
Q ss_pred eEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC--CC
Q 002403 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GR 280 (927)
Q Consensus 211 IKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~--~~ 280 (927)
+-|.++|+ .+++--.|-.- .-++|...-+..-+..|++ +-.++|.++++++|.. ++.+|++-+. ++
T Consensus 207 veV~v~~Dg~g~vv~lg~rd~s----~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~ 282 (1201)
T TIGR02712 207 VEVQIFGDGKGKVVALGERDCS----LQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDE 282 (1201)
T ss_pred EEEEEEECCCCeEEEeeEEEee----eEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCC
Confidence 77766653 34443333210 0111211111111112443 4566888999999865 7779999864 67
Q ss_pred cEEEecCCc
Q 002403 281 SYVCDVNGW 289 (927)
Q Consensus 281 syV~DVNGw 289 (927)
+||+|||.=
T Consensus 283 ~y~lEVNpR 291 (1201)
T TIGR02712 283 FYFLEVNTR 291 (1201)
T ss_pred EEEEEEECC
Confidence 999999963
No 74
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.27 E-value=3.6e-06 Score=106.20 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=121.1
Q ss_pred CcCeeeccccCCCchHHHH--H---HHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAE--S---YATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai--~---y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~ 129 (927)
.+|++|+.++....+.-+. . .++..+. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 152 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSV--------- 152 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCH---------
Confidence 5899999776433343222 1 4556664 44578999999999999999999999999999988751
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 002403 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G 208 (927)
++.... -..++.|+|+||..|. ..++++...... ...+++..- .....+.+|+||||+- .
T Consensus 153 ---ee~~~~-~~~igyPvVVKP~~g~gG~Gv~iv~~~eE---L~~a~~~~~-----------~~s~~~~vLVEe~I~G-~ 213 (1068)
T PRK12815 153 ---EEALAF-AEKIGFPIIVRPAYTLGGTGGGIAENLEE---LEQLFKQGL-----------QASPIHQCLLEESIAG-W 213 (1068)
T ss_pred ---HHHHHH-HHHcCCCEEEEECcCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEccCC-C
Confidence 221111 1134589999999874 122222221110 111111110 0112357999999963 1
Q ss_pred ceeEEEEECC---cee--EEEeecCCCCCCceeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 002403 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (927)
Q Consensus 209 ~DIKvytVG~---~~v--hAe~RkSPv~dG~vrrN~~gke~r--~~v-~Lt~e----Ek~iA~k~~~afgq-~VcGfDlL 275 (927)
..+=|-++.+ +++ .++.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 3344444432 222 22233233 22 1223221 233 47765 36788999999998 57889988
Q ss_pred eeC--CCcEEEecCCccccccchhh
Q 002403 276 RCE--GRSYVCDVNGWSFVKNSYKY 298 (927)
Q Consensus 276 Rs~--~~syV~DVNGwSFVK~n~~Y 298 (927)
-+. +++||+||| +=+-++..+
T Consensus 287 l~~~~g~~~ViEIN--PR~~~s~~l 309 (1068)
T PRK12815 287 LDPKSKQYYLIEVN--PRVSRSSAL 309 (1068)
T ss_pred EECCCCcEEEEEEe--cCcccchhh
Confidence 763 569999999 333344444
No 75
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.24 E-value=5e-06 Score=97.00 Aligned_cols=205 Identities=14% Similarity=0.033 Sum_probs=115.9
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++|+...+ |+. .+...++..+.. .-++..+-.+.+||..+-++|+++|||+|.......+ .+
T Consensus 69 ~id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~-----------~~ 135 (486)
T PRK05784 69 NPDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYD-----------VE 135 (486)
T ss_pred CCCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCC-----------HH
Confidence 36888875444 442 333445566644 4588899999999999999999999999743333332 12
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCC-Ccccc--------cc---ccccc-ccCcceEE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN-RSSEF--------HP---DVRRV-RREGSYIY 200 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n-~sS~~--------~~---~~~~~-r~~gsyIy 200 (927)
+++..- ..+ .|+|+||..+. .|-|+. +...... .++.+ +. ....+ ..+..+|+
T Consensus 136 ea~~~~-~~~-~PvVVKP~~~a-----------ggkGV~-iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlI 201 (486)
T PRK05784 136 EAAKFI-EYG-GSVAIKPARQA-----------GGKGVK-VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILV 201 (486)
T ss_pred HHHHHH-hhc-CCEEEeeCCCC-----------CCCCEE-EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEE
Confidence 222211 112 39999999886 455553 2221110 00000 00 00011 23567999
Q ss_pred eeccCCCCceeEEEEECCceeE-EEeecC-CCCCCceeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhCC--
Q 002403 201 EEFMPTGGTDVKVYTVGPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFRQ-- 267 (927)
Q Consensus 201 eEFi~~~G~DIKvytVG~~~vh-Ae~RkS-Pv~dG~vrrN~~gke~r~~----v~-Lt~eE----k~iA~k~~~afgq-- 267 (927)
||||.-.=-.|=+++-|..++. ...+.- .+.+|+.--|+.|=+.=.| +. +++++ .+++.++..+++.
T Consensus 202 EEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~ 281 (486)
T PRK05784 202 EEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKET 281 (486)
T ss_pred EEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999842234444544444331 112111 1236766667766554333 32 34433 3457777767763
Q ss_pred -----ceeEEEEEee-CCCcEEEecC
Q 002403 268 -----AVCGFDLLRC-EGRSYVCDVN 287 (927)
Q Consensus 268 -----~VcGfDlLRs-~~~syV~DVN 287 (927)
.++-++++-+ .+||+|+|+|
T Consensus 282 g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 282 GERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred CCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 3455688888 9999999999
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.16 E-value=6.3e-06 Score=88.90 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=119.3
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCC-CC--CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002403 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (927)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~g-Ip--~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (927)
.++....|. -+.|||.+|+.|.+.. +. +|.|...... .+....+.- .+-+.+||..|+
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---------~~l~~~L~~-----y~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---------EDLREMLNK-----YKSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---------HHHHHHHHH-----CCEEEEEeCCCC
Confidence 445556665 3579999999999864 44 7888776541 012333332 236899999998
Q ss_pred CcceeEEeccCCCChHHHHHhhcCCC-cccccc------cccccccCcceEEeeccCC---CC--ceeEEEEEC--C---
Q 002403 156 DHSIMIYYPSSAGGGMKELFRKVGNR-SSEFHP------DVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P--- 218 (927)
Q Consensus 156 dHni~IYyp~~~GgG~~rLfrki~n~-sS~~~~------~~~~~r~~gsyIyeEFi~~---~G--~DIKvytVG--~--- 218 (927)
.+..|+.=...++|..--++.-+.. ...|.. -+...-....||+|+.|+- +| -|+||.+-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 4444444433333321111111110 001110 0011235669999999976 55 899999982 2
Q ss_pred ceeEEEeecCCCCCCceeecCCCCceeeeee-----------CCHHHHHHH----HHHHHHhCC--ceeEEEEEee-CCC
Q 002403 219 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-----------LTPNEKQMA----REVCIAFRQ--AVCGFDLLRC-EGR 280 (927)
Q Consensus 219 ~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-----------Lt~eEk~iA----~k~~~afgq--~VcGfDlLRs-~~~ 280 (927)
.+....+|.++ .|.+-+|.++||...++. +..+-+++| ..+.+.||. .-.|+||-=. +|+
T Consensus 146 ~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 146 QVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred EEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCC
Confidence 56788999998 999999999888865541 222233444 444556674 7889999887 566
Q ss_pred cEEEecCCccccc
Q 002403 281 SYVCDVNGWSFVK 293 (927)
Q Consensus 281 syV~DVNGwSFVK 293 (927)
..++|||.-+-..
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 7799999865443
No 77
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.71 E-value=7.7e-05 Score=86.44 Aligned_cols=201 Identities=17% Similarity=0.201 Sum_probs=129.2
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcCCcccC--CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVN--ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~iN--dl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e 131 (927)
.+|+++|.|+ |-- .+..+-++..+ ++.. +.+....++||...-++++++|||+|+....-- .+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~----------~~ 140 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAV----------AD 140 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCc----------CC
Confidence 6889999887 433 34445555555 3333 335667899999999999999999999872110 01
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccc---cccCcceEEeeccCCCC
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR---VRREGSYIYEEFMPTGG 208 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~---~r~~gsyIyeEFi~~~G 208 (927)
.++.+... ..++.|+|+||..|- -|.|+ |+.+....-...|..-... .-.++.++.|+|+.. -
T Consensus 141 ~ee~~~~a-~~iGyPVivKa~~Gg-----------Gg~G~-r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~ 206 (449)
T COG0439 141 NEEALAIA-EEIGYPVIVKAAAGG-----------GGRGM-RVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-P 206 (449)
T ss_pred HHHHHHHH-HHcCCCEEEEECCCC-----------CcccE-EEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-C
Confidence 23333322 235599999999986 44455 3555442111111110000 114677999999987 3
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEee-CC
Q 002403 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EG 279 (927)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~----iA~k~~~afgq~VcG-fDlLRs-~~ 279 (927)
+=|=+-+.|+ .++|.-.|-. +.=||+-.=.|..-...++++.+. .|.+++++.|-.-|| |.+|=. ++
T Consensus 207 rhievqv~gD~~g~~i~l~eRdc----siqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~ 282 (449)
T COG0439 207 RHIEVQVLGDGHGNVIHLGERDC----SIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNG 282 (449)
T ss_pred ceEEEEEEEcCcccEEEEEeccC----CCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Confidence 4555666665 4588888863 234566665666655566766554 467888888777776 788888 59
Q ss_pred CcEEEecC
Q 002403 280 RSYVCDVN 287 (927)
Q Consensus 280 ~syV~DVN 287 (927)
++|++|+|
T Consensus 283 ~~yfiEmN 290 (449)
T COG0439 283 EFYFIEMN 290 (449)
T ss_pred CEEEEEEe
Confidence 99999999
No 78
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.59 E-value=0.0003 Score=78.16 Aligned_cols=170 Identities=25% Similarity=0.407 Sum_probs=111.9
Q ss_pred CCcCe-eeccccCCCchHHHHHHHHhcCCccc----CCch-hhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccc
Q 002403 55 PICDC-LIAFYSSGYPLEKAESYATLRKPFLV----NELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDY 128 (927)
Q Consensus 55 P~~D~-lIsf~s~gfpl~kai~y~~lr~p~~i----Ndl~-~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~ 128 (927)
+.+|| +|+| +||+. ++ .++++.. |+-. ....+-+|.+.|..|...|.|.|.+.-..
T Consensus 82 ~dvD~~ii~~--sg~e~---l~---~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e---------- 143 (389)
T COG2232 82 EDVDAPIIPF--SGFEA---LR---TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE---------- 143 (389)
T ss_pred hhcceeeeec--ccccc---cc---ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhh----------
Confidence 45788 5543 45533 22 3454433 5555 77788889999999999999988653221
Q ss_pred cccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC--
Q 002403 129 FIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-- 206 (927)
Q Consensus 129 ~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~-- 206 (927)
-+. -| .+|.|+||++|. | |. ++.+. ++.+. + -.-+|.||||+-
T Consensus 144 ------~~~-~g---ekt~IlKPv~Ga------------G-G~---~el~~-----~~Ee~--~--~~~~i~Qefi~G~p 188 (389)
T COG2232 144 ------PLE-EG---EKTLILKPVSGA------------G-GL---VELVK-----FDEED--P--PPGFIFQEFIEGRP 188 (389)
T ss_pred ------hhh-hc---ceeeEEeeccCC------------C-ce---eeecc-----ccccc--C--CcceehhhhcCCce
Confidence 111 22 379999999995 3 32 33331 22111 0 167899999973
Q ss_pred -------CCceeEEEEECCceeEEEeecCCCCCCceeecCC-----CCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEE
Q 002403 207 -------GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPD-----GKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFD 273 (927)
Q Consensus 207 -------~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~-----gke~r~~v~Lt~eEk~iA~k~~~afgq~-VcGfD 273 (927)
+|.|....+|...++- |. +.+-. |-=+.+++...+|-.++|..+..-||+. --|||
T Consensus 189 ~Svs~is~g~~a~~la~N~QiI~----------~~-~~~~~~f~Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVD 257 (389)
T COG2232 189 VSVSFISNGSDALTLAVNDQIID----------GL-RGEYSQFVYKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVD 257 (389)
T ss_pred eEEEEEecCcceEEEEEeeeeec----------cc-ccccccceeccCcCCCcchhhHHHHHHHHHHHHHhccccccccc
Confidence 4566666666555443 21 11222 4456677777777788999999999974 67999
Q ss_pred EEeeCCCcEEEecCC
Q 002403 274 LLRCEGRSYVCDVNG 288 (927)
Q Consensus 274 lLRs~~~syV~DVNG 288 (927)
++-...||||+|||=
T Consensus 258 fvl~d~gpyViEVNP 272 (389)
T COG2232 258 FVLNDKGPYVIEVNP 272 (389)
T ss_pred eEeecCCcEEEEecC
Confidence 999999999999994
No 79
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.59 E-value=0.0015 Score=74.09 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=99.1
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 002403 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (927)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (927)
-+..+.....||.+..+.|.++|||+|+++ .. + ++ +..|+|+||..|.+ +-.++...
T Consensus 113 gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~--~----------~~--------i~~PvIVKp~~g~g-gkGv~i~~ 169 (358)
T PRK13278 113 GNREILRWEADRDKERKLLEEAGIRIPRKY--ES--P----------ED--------IDRPVIVKLPGAKG-GRGYFIAK 169 (358)
T ss_pred CCHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CC--H----------HH--------cCCCEEEEeCCCCC-CCCeEEeC
Confidence 356688899999999999999999999962 21 1 11 13699999988753 33444443
Q ss_pred CCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE---CCceeEEEeecCCC-CCCceee--c-
Q 002403 166 SAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGVVMR--N- 238 (927)
Q Consensus 166 ~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytV---G~~~vhAe~RkSPv-~dG~vrr--N- 238 (927)
+..- ....++.+-++. . +.....+|+||||.-.--.+=+|+. |.-...++.|+=-. .||.+|- +
T Consensus 170 s~~E-l~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~ 240 (358)
T PRK13278 170 SPEE-FKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKD 240 (358)
T ss_pred CHHH-HHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccceeeccchh
Confidence 3221 222333321110 1 1125779999999742223335553 55455555554332 4565651 1
Q ss_pred --CCCCceeeeee------CC----HHHHHHHHHHHHH----h-CCcee--EEEEEeeCCC-cEEEecCCcc
Q 002403 239 --PDGKEVRYPVL------LT----PNEKQMAREVCIA----F-RQAVC--GFDLLRCEGR-SYVCDVNGWS 290 (927)
Q Consensus 239 --~~gke~r~~v~------Lt----~eEk~iA~k~~~a----f-gq~Vc--GfDlLRs~~~-syV~DVNGwS 290 (927)
..+.+-.+++. +. ++-.+++.+++++ + +..+| .+|.+.+.++ .||+|||+=-
T Consensus 241 ~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 241 QLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred hhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 11222222222 22 4555667777776 5 54444 5677776555 6999998754
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.43 E-value=3e-05 Score=81.47 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 002403 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (927)
Q Consensus 96 DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (927)
||.++.+++.+.|||+|+....--+ +.++.+.+. +.+++|+++||..|- -|-|. +++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~a-~~iGyPVliKas~gg-----------GG~gm-~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEFA-EEIGYPVLIKASAGG-----------GGRGM-RIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHHH-HHH-SSEEEEETTSS-----------TTTSE-EEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHHH-HhcCCceEEeecccc-----------ccccc-ccc
Confidence 7999999999999999988765111 134444322 346799999999875 22232 233
Q ss_pred hhcCCCcccccccccccc---cCcceEEeeccCC-CCceeEEEEECC-ceeEEEeecCCCCCCceeecCCCC--ceeeee
Q 002403 176 RKVGNRSSEFHPDVRRVR---REGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVRYPV 248 (927)
Q Consensus 176 rki~n~sS~~~~~~~~~r---~~gsyIyeEFi~~-~G~DIKvytVG~-~~vhAe~RkSPv~dG~vrrN~~gk--e~r~~v 248 (927)
.....-.+.+........ .++.+++|+|+.. .--+|-|..=|. +++|.-.|-. ...+ -+|+ +..=+.
T Consensus 58 ~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~-----~~~~-hs~dsi~~~P~~ 131 (211)
T PF02786_consen 58 HNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGEREC-----SEQR-HSQDSIEEAPAQ 131 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEE-----EEEE-TTEEEEEEES-S
T ss_pred cchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeecc-----cccc-ccccceeEeecc
Confidence 322111111111000000 2788999999987 444444443332 4555555544 1222 2233 344455
Q ss_pred eCCHHHH----HHHHHHHHHhCC-ceeEEEEEee--CCCcEEEecCCc
Q 002403 249 LLTPNEK----QMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 289 (927)
Q Consensus 249 ~Lt~eEk----~iA~k~~~afgq-~VcGfDlLRs--~~~syV~DVNGw 289 (927)
.||+++. ++|.++|+++|. .+|-|-++-. ++..||+|||=.
T Consensus 132 ~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 132 TLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred ccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 7888665 478999999986 4788999998 688999999954
No 81
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.26 E-value=0.0009 Score=75.81 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHH
Q 002403 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKE 173 (927)
Q Consensus 95 ~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~r 173 (927)
+|++..|.+|.++|||+|+++-. | + ++ ..|+|+||..|.. -...++..++. ..
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p-----------~--eI-----d~PVIVKp~~asG~~srG~f~a~s~----eE 178 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----P-----------E--EI-----DRPVIVKLPEAKRRLERGFFTASSY----ED 178 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----c-----------c--cc-----CccEEEEECCCCCccccCeEeeCCH----HH
Confidence 56788899999999999999852 1 1 22 3699999999971 01111111110 11
Q ss_pred HHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CC--ceeEEEeecCCCCCCceee------------
Q 002403 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMR------------ 237 (927)
Q Consensus 174 Lfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytV--G~--~~vhAe~RkSPv~dG~vrr------------ 237 (927)
|.++....+ ......-.....+++||||.-.--.+-+|.. -+ +++..-.|--=-+||.+|-
T Consensus 179 l~~~a~~l~---~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p 255 (366)
T PRK13277 179 FYEKSEELI---KAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEP 255 (366)
T ss_pred HHHHHHhhh---hcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCC
Confidence 111110000 0000000122567899999742233335544 34 4444444422125776652
Q ss_pred -cCCCCceeeeeeCC----HHHHHHHHHHHHHhCC-----ce--eEEEEEeeC-CCcEEEecC
Q 002403 238 -NPDGKEVRYPVLLT----PNEKQMAREVCIAFRQ-----AV--CGFDLLRCE-GRSYVCDVN 287 (927)
Q Consensus 238 -N~~gke~r~~v~Lt----~eEk~iA~k~~~afgq-----~V--cGfDlLRs~-~~syV~DVN 287 (927)
+.--|+ .|+.++ ++-.+++.+++++++. .+ ..+|.+.+. +..||+|||
T Consensus 256 ~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EIn 316 (366)
T PRK13277 256 RYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVA 316 (366)
T ss_pred ceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEc
Confidence 122222 233333 5667788888899873 22 345666655 668899999
No 82
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0028 Score=72.48 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=112.1
Q ss_pred CcCeeeccccCCCchHHHHHHHHh-----cC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~l-----r~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~ 129 (927)
+.|++++-++-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++.-
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~--------- 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSV--------- 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccH---------
Confidence 459999999999999655553221 13 4578999999999999999999999999999 3344331
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccc-cccc--cCcceEEeeccCC
Q 002403 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVR--REGSYIYEEFMPT 206 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~-~~~r--~~gsyIyeEFi~~ 206 (927)
.+..+.+. .++.|+|+||--|. -|.|+. .++.. .++..-. ...+ .-...+.||+|..
T Consensus 140 ~e~~~~~~----~ig~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIAD----EIGYPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHh----hcCCCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 12233333 24489999999886 332443 33221 1111000 0111 1235667777765
Q ss_pred C----------CceeEEEEECCceeEEEeecCCCCCCceeecCCCCceee---eeeCCHHHHH----HHHHHHHHhCCc-
Q 002403 207 G----------GTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRY---PVLLTPNEKQ----MAREVCIAFRQA- 268 (927)
Q Consensus 207 ~----------G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~---~v~Lt~eEk~----iA~k~~~afgq~- 268 (927)
. +.|-.+++ -.|.+-=| .|.- -|.... .-.|+..|-+ .|.++.+++|..
T Consensus 200 ~ke~e~ev~rd~~~n~ivv------c~men~dp--~gvh-----tgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G 266 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIVV------CNMENLDP--MGVH-----TGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEG 266 (400)
T ss_pred ceEEEEEEEEeCCCCEEEE------EeCCcccc--cccc-----ccceeeeccccccccHHHHHHHHHHHHHHHHhcccC
Confidence 2 22222222 23344333 3332 222221 2245555544 455788888765
Q ss_pred eeEEEEEeeCC--CcEEEecC-Ccccc
Q 002403 269 VCGFDLLRCEG--RSYVCDVN-GWSFV 292 (927)
Q Consensus 269 VcGfDlLRs~~--~syV~DVN-GwSFV 292 (927)
=|-|+.-=..+ ..||+||| .+|=.
T Consensus 267 ~~niQ~av~~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 267 GCNIQFAVDPGGGELYVIEINPRVSRS 293 (400)
T ss_pred CCceeEEEcCCCceEEEEEecCCcCcc
Confidence 24466555443 47899999 66644
No 83
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=96.81 E-value=0.0041 Score=63.82 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=78.2
Q ss_pred HHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhcCCC
Q 002403 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 181 (927)
Q Consensus 104 L~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrki~n~ 181 (927)
|++.|||+|++..+... +|.-. ....++.|+|.|+..| - .++.++-...+ -..+.++.+
T Consensus 1 l~~~gip~~~~~~i~~~------------~~l~~-a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~---dl~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL------------EDLEE-AAESIGFPAVLKTRRGGYDGKGQFVIRSEE---DLEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSH------------HHHHH-HHHHHTSSEEEEESSSSCTTTTEEEESSGG---GHHHHHHHT---
T ss_pred CcccCCCCCCeEEECCH------------HHHHH-HHHHcCCCEEEEccCcCcCCCccEEECCHH---HHHHHHHhc---
Confidence 78999999999999862 22111 2234568999997665 3 23333333221 122233322
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHH
Q 002403 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 257 (927)
Q Consensus 182 sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~i 257 (927)
..+.+|.|+||+- ...|=|.++-+ ..-+.+-=|++. .+.+|-.-...-.|..+++ +-++|
T Consensus 62 ------------~~~~~ilE~~v~f-~~EiSvivaR~--~~G~~~~yp~~e-n~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPF-DREISVIVARD--QDGEIRFYPPVE-NVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---E-SEEEEEEEEEE--TTSEEEEEEEEE-EEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCC-cEEEEEEEEEc--CCCCEEEEcCce-EEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999985 33444444321 111112122111 1112222234455666775 55678
Q ss_pred HHHHHHHhCC-ceeEEEEEeeCCC--cEEEecC
Q 002403 258 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDVN 287 (927)
Q Consensus 258 A~k~~~afgq-~VcGfDlLRs~~~--syV~DVN 287 (927)
|.+|+.+++. .|-+|.+.-+.+| -||-|+-
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEia 158 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIA 158 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEecc
Confidence 8888888864 5788899988655 4787764
No 84
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=96.42 E-value=0.016 Score=60.88 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcE-EEeeccc-cCcceeEEeccCC-CChHH
Q 002403 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 172 (927)
Q Consensus 96 DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPf-VeKpv~G-edHni~IYyp~~~-GgG~~ 172 (927)
||..+=++++++||||+.+..... +.+...+|+-. ..|. |+|+--- ...++.|.-.... --.++
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~---------~~~A~~~l~~~----~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTD---------YEEALEYLEEQ----GYPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESS---------HHHHHHHHHHH----SSSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECC---------HHHHHHHHHhc----CCCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 577788999999999998777664 12344555422 3577 9998432 2344555432211 11122
Q ss_pred HHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEE-----eecCCCCCCceeecCCCCceee
Q 002403 173 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (927)
Q Consensus 173 rLfrki~n~sS~~~~~~~~~r-~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe-----~RkSPv~dG~vrrN~~gke~r~ 246 (927)
++|..- .+. .+...|.|||+.-.=--+=++|=|..++.-- .|-- ||+-=-|+-|=|.=.
T Consensus 69 ~~~~~~------------~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVDR------------KFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTSS------------TTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhcccc------------ccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 222200 111 3567899999975445566677787765322 2444 899888998877777
Q ss_pred eeeC-CHHH-----HHHHHHHHHHh---CCceeE---EEEEeeCCCcEEEecC
Q 002403 247 PVLL-TPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 287 (927)
Q Consensus 247 ~v~L-t~eE-----k~iA~k~~~af---gq~VcG---fDlLRs~~~syV~DVN 287 (927)
|+.. |+++ +.|...+.+++ |...+| +.|+-+.+||+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7755 5543 23444455554 445555 5788889999999998
No 85
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0094 Score=66.42 Aligned_cols=220 Identities=18% Similarity=0.237 Sum_probs=137.6
Q ss_pred EeecCcccCChhHH-------------HHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchHHHHHHH
Q 002403 11 VCVMEKKVFSAPMG-------------QILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYA 77 (927)
Q Consensus 11 VCam~~Ka~SkPm~-------------~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~ 77 (927)
|.|.|+=+....|| +-|..+++....|.||=.=+- +-. .++--+
T Consensus 38 ViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEA----------------------I~t-d~L~el 94 (394)
T COG0027 38 VIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEA----------------------IAT-DALVEL 94 (394)
T ss_pred EEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhh----------------------hhH-HHHHHH
Confidence 67788888777776 345555555444444421111 111 233345
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 002403 78 TLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (927)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (927)
+..+-.+|-...+-.+..||-..-++. ++.|+||-++-|++. .+++.. .-+.++.|.|+||+-++
T Consensus 95 E~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s------------~~e~~~-a~~~iGfPcvvKPvMSS- 160 (394)
T COG0027 95 EEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADS------------LEELRA-AVEKIGFPCVVKPVMSS- 160 (394)
T ss_pred HhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCcccccccc------------HHHHHH-HHHHcCCCeeccccccc-
Confidence 566666777777778888884443333 356999999999986 222222 22345699999999987
Q ss_pred cceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEE---ECCc--eeEEEeecCCC
Q 002403 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYT---VGPE--YAHAEARKSPV 230 (927)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIyeEFi~~~G~DIKvyt---VG~~--~vhAe~RkSPv 230 (927)
.|-|- -+.++..+-.+.++--...-| ..+..|+|+||+-+ ..|-..| +++. ||+-.--+-+
T Consensus 161 ----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd-~EiTlLtvr~~~~~~~Fc~PIGHrq~- 227 (394)
T COG0027 161 ----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFD-FEITLLTVRAVDGTGSFCAPIGHRQE- 227 (394)
T ss_pred ----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecce-EEEEEEEEEEecCCCCcCCCcccccC-
Confidence 77775 467766544444442111124 56779999999873 2334444 3333 5543322221
Q ss_pred CCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhC-CceeEEEEEeeCCCcEEEecC
Q 002403 231 VDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVN 287 (927)
Q Consensus 231 ~dG~vrrN~~gke~r~~v~Lt~e----Ek~iA~k~~~afg-q~VcGfDlLRs~~~syV~DVN 287 (927)
||+. -|.-.|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|.-||-
T Consensus 228 -dgdY------~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEVS 282 (394)
T COG0027 228 -DGDY------RESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVS 282 (394)
T ss_pred -CCCh------hcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeecC
Confidence 5554 577889999974 4678888899986 579999998887777777774
No 86
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.0029 Score=70.82 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=130.9
Q ss_pred HHHhcCCcccCCchhhhHhhhHHHHHHHHHh----CC---CCC-CCEEEEeccCCCccccccccccceeeecCeeccCcE
Q 002403 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEK----YG---IPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF 147 (927)
Q Consensus 76 y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~----~g---Ip~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPf 147 (927)
-+..-+.+.||++.+.+-+-||--+..-|.+ .| +|+ |.+.+-+ ....+..- .+|+
T Consensus 180 g~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn-------------HK~m~s~~----tyPv 242 (488)
T KOG3895|consen 180 GLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN-------------HKEMLSQP----TYPV 242 (488)
T ss_pred HHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC-------------chhhccCC----CCcE
Confidence 3445678899999999999999555444443 23 442 2222222 22222212 3799
Q ss_pred EEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEee
Q 002403 148 VEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEAR 226 (927)
Q Consensus 148 VeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~R 226 (927)
|+|-=.|- +|.|-. |+.|....-|-.. .+. .+.-.-.|-||.. --|||+=-||.+|-+=|+|
T Consensus 243 VVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDa-KYDiriQKIG~nYKaymRt 305 (488)
T KOG3895|consen 243 VVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMRT 305 (488)
T ss_pred EEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhccccccc-cceeehhhhhhhHHHHhhh
Confidence 99997776 777743 3433332222110 112 2233346788876 5799999999998776665
Q ss_pred cCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhC-CceeEEEEEeeC-CCcEEEecCCccccccchhhH----H
Q 002403 227 KSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRCE-GRSYVCDVNGWSFVKNSYKYY----D 300 (927)
Q Consensus 227 kSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afg-q~VcGfDlLRs~-~~syV~DVNGwSFVK~n~~YY----d 300 (927)
| +.|.|.+|+ |-..-+.|..++..|...--++..|| +.||.||.|-++ |+-||+|||+-|. -|+ +
T Consensus 306 -s--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~sm-----pliGeh~e 376 (488)
T KOG3895|consen 306 -S--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSM-----PLIGEHQE 376 (488)
T ss_pred -h--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeeccccc-----cccccchh
Confidence 5 599999997 55666788889999999888899996 799999999996 5699999998542 333 2
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 002403 301 DAACVLRKMFLEAKAPHL 318 (927)
Q Consensus 301 ~cA~iL~~~~l~~~~~~~ 318 (927)
+=.+.+..++....++..
T Consensus 377 eDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 377 EDRQLISELVVSKMAQLL 394 (488)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 223445555555555543
No 87
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.054 Score=61.77 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=116.8
Q ss_pred eccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecC
Q 002403 61 IAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHG 140 (927)
Q Consensus 61 Isf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g 140 (927)
|+|=....|. .++++.... ..+-=..++..+++||+.==+.|+++|||+|....+.+. +|... -.
T Consensus 66 iT~EfE~V~~-~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~------------~el~~-~~ 130 (375)
T COG0026 66 ITYEFENVPA-EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSA------------EELDA-AA 130 (375)
T ss_pred EEEeeccCCH-HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHH-HH
Confidence 3333334444 456666665 334446788999999999999999999999999999862 22221 22
Q ss_pred eeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce
Q 002403 141 NRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY 220 (927)
Q Consensus 141 ~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~ 220 (927)
..++.|+|+|.--|- | .|-|.. .++......+... ..-..+..|.|+|++=. .-|-|.++ +-
T Consensus 131 ~~~g~p~VlKtr~gG-------Y---DGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~-~EiSvi~a--R~ 192 (375)
T COG0026 131 ADLGFPAVLKTRRGG-------Y---DGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFE-REISVIVA--RS 192 (375)
T ss_pred HHcCCceEEEecccc-------c---cCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccc-eEEEEEEE--Ec
Confidence 345589999999873 1 355543 3332221111111 11123444999999873 33444443 11
Q ss_pred eEEEeecCCCCCCceeecCCCCceee----eeeCC----HHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcE-EEecCCcc
Q 002403 221 AHAEARKSPVVDGVVMRNPDGKEVRY----PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSY-VCDVNGWS 290 (927)
Q Consensus 221 vhAe~RkSPv~dG~vrrN~~gke~r~----~v~Lt----~eEk~iA~k~~~afgq-~VcGfDlLRs~~~sy-V~DVNGwS 290 (927)
.-.+.+-=|++ -|.|..++=. |..++ .+-++||.+++..++. .|-||.+.-+.+|.+ |-|.- +
T Consensus 193 ~~G~~~~yP~~-----eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiA--P 265 (375)
T COG0026 193 NDGEVAFYPVA-----ENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIA--P 265 (375)
T ss_pred CCCCEEEeccc-----ceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeecc--C
Confidence 11222222322 3566555432 22344 4566788888888874 678888888877543 44432 4
Q ss_pred ccccchhhHHHHHH
Q 002403 291 FVKNSYKYYDDAAC 304 (927)
Q Consensus 291 FVK~n~~YYd~cA~ 304 (927)
=|-||-.|=-+.+.
T Consensus 266 RvHNSGH~T~~gc~ 279 (375)
T COG0026 266 RVHNSGHWTIDGCE 279 (375)
T ss_pred CCCCccccchhhcc
Confidence 44455555444443
No 88
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=95.27 E-value=0.73 Score=49.78 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=101.1
Q ss_pred hhhHhhhHHHHHHHHHhCC--CCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCC
Q 002403 90 PQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSA 167 (927)
Q Consensus 90 ~q~~l~DR~~~lqiL~~~g--Ip~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~ 167 (927)
-...+-||..|-..+++.+ ..+|+++-+-.+ -+.| +=..+..+||+||..|+. .+.|+.-++.
T Consensus 14 ~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~------------~~~i--~~~~Lp~~fViK~nhgsg-~~~i~~dk~~ 78 (239)
T PF14305_consen 14 LFTKLADKYAVREYVEEKIGEEYLPPLLGVYDN------------PDDI--DFDSLPDKFVIKPNHGSG-SNIIVRDKSK 78 (239)
T ss_pred cceecchHHHHHHHHHHhCCCceECceeecCCC------------hhhh--hhhcCCCCEEEEEecCCC-cEEEEeCCcc
Confidence 3456889999999999886 445555544432 1222 222355799999999985 4444444433
Q ss_pred CC--hHHHHHhh-cCCCcccccccccccc-cCcceEEeeccCC-CC---ceeEEEEECCc--eeEEEeecCC-----CCC
Q 002403 168 GG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSP-----VVD 232 (927)
Q Consensus 168 Gg--G~~rLfrk-i~n~sS~~~~~~~~~r-~~gsyIyeEFi~~-~G---~DIKvytVG~~--~vhAe~RkSP-----v~d 232 (927)
.- -+++.+++ ....-.....+- ..+ -.--.|+|||+.. .| .|.|+|+.+++ ++.......+ ..|
T Consensus 79 ~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~yd 157 (239)
T PF14305_consen 79 LDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFYD 157 (239)
T ss_pred cCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEEC
Confidence 21 11112222 111111111111 222 3446899999999 66 79999999995 5555444321 112
Q ss_pred CceeecC------CCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecC
Q 002403 233 GVVMRNP------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 287 (927)
Q Consensus 233 G~vrrN~------~gke~r~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~~~syV~DVN 287 (927)
.+|.+=. .+.....|-.| ++..++|.++|+-|. .|=||+..++++.|.-|.=
T Consensus 158 ~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGElT 215 (239)
T PF14305_consen 158 RDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGELT 215 (239)
T ss_pred cccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEeee
Confidence 2211100 11222222222 355667777777655 6889999999999999874
No 89
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=93.01 E-value=0.65 Score=52.01 Aligned_cols=157 Identities=24% Similarity=0.304 Sum_probs=89.2
Q ss_pred HhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHH
Q 002403 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (927)
Q Consensus 93 ~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~ 172 (927)
-+-.|=.-|.+-.+.|+|.|+|+.++.. .|+ .+-.+..|+|.||-.|- |+-
T Consensus 111 wlceKPllY~ra~elgl~~P~Ty~v~S~------------~d~---~~~el~FPvILKP~mgg--------------~~~ 161 (415)
T COG3919 111 WLCEKPLLYNRAEELGLPYPKTYLVNSE------------IDT---LVDELTFPVILKPGMGG--------------SVH 161 (415)
T ss_pred HHhhCcHHHHHHHHhCCCCcceEEecch------------hhh---hhhheeeeEEecCCCCC--------------cce
Confidence 3344555688888999999999999962 111 22234579999996542 222
Q ss_pred HHHhhcCC-Ccccccccccccc-----cCcceEEeeccCCCCceeEEEEE----CCce---eEEEeecCCCCCCceeecC
Q 002403 173 ELFRKVGN-RSSEFHPDVRRVR-----REGSYIYEEFMPTGGTDVKVYTV----GPEY---AHAEARKSPVVDGVVMRNP 239 (927)
Q Consensus 173 rLfrki~n-~sS~~~~~~~~~r-----~~gsyIyeEFi~~~G~DIKvytV----G~~~---vhAe~RkSPv~dG~vrrN~ 239 (927)
...|+.-- +++.-+-.+-.+| --.+.|+||||+-+|+.-++|.- |-.+ .+--+|+=||--|
T Consensus 162 ~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPvdfg------ 235 (415)
T COG3919 162 FEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPVDFG------ 235 (415)
T ss_pred eehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCcccc------
Confidence 22222110 0010000000011 12457999999999998887642 3322 2233556663222
Q ss_pred CCCceeeeeeCCH--HHHHHHHHHHHHhCC-ceeEEEEEee-CCCcE-EEecC
Q 002403 240 DGKEVRYPVLLTP--NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSY-VCDVN 287 (927)
Q Consensus 240 ~gke~r~~v~Lt~--eEk~iA~k~~~afgq-~VcGfDlLRs-~~~sy-V~DVN 287 (927)
=..+.|++-. +--+-|+++-..++- ..+-||+=+. .+||| ++|||
T Consensus 236 ---ytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 236 ---YTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred ---cccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 2334555544 333445555555443 4677899887 67899 99999
No 90
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=91.65 E-value=0.11 Score=59.26 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=39.5
Q ss_pred hhHHHhhc--cCCCCCchhhh--cccccccceEeecCCchHHHHHHHHHhhhcccCCCCCcceeeeEecC
Q 002403 495 NEIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKD 560 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrL--hst~rhDlKIysSdEgRVq~TAaaFakg~L~legeltPilv~~V~kd 560 (927)
=.+|..|| |-- -+|.+ |.---.|+-++|+--+|.-.||-||-=+||--. ...|| .||-.
T Consensus 178 L~~G~~~r~~Y~k---~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i---~iR~s 240 (487)
T KOG3672|consen 178 LRLGKYFRHRYEK---TKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPI---QIRAS 240 (487)
T ss_pred HhhhHHHHHHHhh---ccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhee---eeecC
Confidence 35799999 631 12222 223335777999999999999999988887654 35566 35544
No 91
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=88.71 E-value=3.2 Score=41.12 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=53.3
Q ss_pred cccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHH--HhCCce
Q 002403 192 VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAV 269 (927)
Q Consensus 192 ~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~--afgq~V 269 (927)
...+..++..|-++ -..--|+|++.++++.+ .+- .|..+.. ..++.-.-|.++.+ .-.-..
T Consensus 32 ~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~-s~Y----~~~~~~~-----------~~~~~~~~~~~~~~~~~~~p~~ 94 (130)
T PF14243_consen 32 LDPDTPVLVSEVVE-IESEWRCFIVDGEVVTG-SPY----RGDWDLE-----------PDPDVVAFAIQALAAAWTLPPA 94 (130)
T ss_pred CCCCceEEEeceEe-eeeeEEEEEECCEEEEE-eec----CCCcccC-----------CCHHHHHHHHHHHHhcccCCCe
Confidence 34566677777777 46778999999986654 332 1111111 14444444455544 455788
Q ss_pred eEEEEEee-CCCcEEEecC-Ccc
Q 002403 270 CGFDLLRC-EGRSYVCDVN-GWS 290 (927)
Q Consensus 270 cGfDlLRs-~~~syV~DVN-GwS 290 (927)
|.+|+=++ .|+.+|+|+| ||+
T Consensus 95 ~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 95 YVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEEeCCCCEEEEEecCccc
Confidence 99999999 6789999999 554
No 92
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=85.34 E-value=1.2 Score=55.20 Aligned_cols=178 Identities=23% Similarity=0.291 Sum_probs=117.6
Q ss_pred CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc-cceeeecCeeccCcEEEeeccccCccee
Q 002403 82 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE-EDFVEVHGNRFWKPFVEKPVHGDDHSIM 160 (927)
Q Consensus 82 p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~-~d~i~v~g~~~~kPfVeKpv~GedHni~ 160 (927)
.|+==..+....+-||-++-.+-.++|||+=. ..++|. ++ ++..+ -++..++|+++|..-|-
T Consensus 107 ~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvip----gt~~~~-------~~~ee~~~-fa~~~gyPvmiKA~~GG----- 169 (1149)
T COG1038 107 TFIGPKPEVLDMLGDKVKARNAAIKAGVPVIP----GTDGPI-------ETIEEALE-FAEEYGYPVMIKAAAGG----- 169 (1149)
T ss_pred EEeCCCHHHHHHhccHHHHHHHHHHcCCCccC----CCCCCc-------ccHHHHHH-HHHhcCCcEEEEEccCC-----
Confidence 34445678899999999999989999999522 223332 22 22222 22345699999998775
Q ss_pred EEeccCCCChHHHHHhhcC-------CCcccccccccccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCC
Q 002403 161 IYYPSSAGGGMKELFRKVG-------NRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPV 230 (927)
Q Consensus 161 IYyp~~~GgG~~rLfrki~-------n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~---~~vhAe~RkSPv 230 (927)
||-++|..|+.. .++|+=.+ .+ -++...+|.|+.. ..-|-|=+.|+ +++|--.|-+-
T Consensus 170 -------GGRGMR~vr~~~~l~~~~~~AksEAka---AF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCS- 236 (1149)
T COG1038 170 -------GGRGMRVVRSEADLAEAFERAKSEAKA---AF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCS- 236 (1149)
T ss_pred -------CccceeeecCHHHHHHHHHHHHHHHHH---hc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccc-
Confidence 332234444332 11121111 12 2455566888876 56677777774 68999999884
Q ss_pred CCCceeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEeeC-CCcEEEecCCcccc
Q 002403 231 VDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRCE-GRSYVCDVNGWSFV 292 (927)
Q Consensus 231 ~dG~vrrN~~gke~r~~v~Lt~eEk~----iA~k~~~afgq~VcG-fDlLRs~-~~syV~DVNGwSFV 292 (927)
.=|||-.==|++-.+-|+++-++ -|.|+|+..|-.=+| +..|-.+ ++-|.+|||=---|
T Consensus 237 ---vQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 237 ---VQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred ---hhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 34677666788888899998764 589999999977666 6667765 47999999965544
No 93
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=83.34 E-value=2 Score=50.24 Aligned_cols=187 Identities=16% Similarity=0.197 Sum_probs=109.8
Q ss_pred HHHHHHhcCCcccCCchh-hhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEee
Q 002403 73 AESYATLRKPFLVNELEP-QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (927)
Q Consensus 73 ai~y~~lr~p~~iNdl~~-q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKp 151 (927)
+...|+.++..+.--... -.+=++|..+=.+++++|||++.+-..+. ..+..++|.-- +.|+|+||
T Consensus 79 vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~---------~e~a~ayi~~~----g~piVVKa 145 (428)
T COG0151 79 VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTD---------PEEAKAYIDEK----GAPIVVKA 145 (428)
T ss_pred hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCC---------HHHHHHHHHHc----CCCEEEec
Confidence 345555666555544333 33557888899999999999998877763 12355666522 37999999
Q ss_pred ccccCcceeEEeccCCCChHHHHHhhcCCCcccccccc--cccc-cCcceEEeeccCCCCceeEEEEECCceeE---E--
Q 002403 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---A-- 223 (927)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~--~~~r-~~gsyIyeEFi~~~G~DIKvytVG~~~vh---A-- 223 (927)
.-=. .|-||. .......+..-.+.-+ +.+. .....+.|||+.-.=--+=|+|=|..++- |
T Consensus 146 dGLa-----------aGKGV~-V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQD 213 (428)
T COG0151 146 DGLA-----------AGKGVI-VAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQD 213 (428)
T ss_pred cccc-----------CCCCeE-EcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccc
Confidence 3323 455663 3322211111100000 0111 12568999999865556667777766432 1
Q ss_pred EeecCCCCCCceeecCCCCceeeeee-CCHHHHH-----HHHHHHHHhC---CceeEE---EEEeeCCCcEEEecC
Q 002403 224 EARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-----MAREVCIAFR---QAVCGF---DLLRCEGRSYVCDVN 287 (927)
Q Consensus 224 e~RkSPv~dG~vrrN~~gke~r~~v~-Lt~eEk~-----iA~k~~~afg---q~VcGf---DlLRs~~~syV~DVN 287 (927)
-.| +.||+-=-|+-|=|.=.|+. +|++.-+ |...+.++|. -..+|| =|+-+.+||+|+|.|
T Consensus 214 hKr---a~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 214 HKR---AYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred ccc---ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 123 24888888998877655554 4555333 3344455554 446776 345677889999999
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=80.26 E-value=0.5 Score=53.98 Aligned_cols=42 Identities=31% Similarity=0.435 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeec-cCcEEEeec
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPV 152 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~-~kPfVeKpv 152 (927)
..+.++|+++|||+|++.++... ++...... .+ ++|+|+||.
T Consensus 6 ~~ak~lL~~~gIpvp~~~~~~~~------------~ea~~~a~-~i~g~PvVvK~~ 48 (388)
T PRK00696 6 YQAKELFAKYGVPVPRGIVATTP------------EEAVEAAE-ELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHcCCCCCCCeeeCCH------------HHHHHHHH-HcCCCcEEEEEe
Confidence 45678999999999999988752 22222111 13 589999996
No 95
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=79.08 E-value=2.1 Score=51.02 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=112.2
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc-ceeeecCeeccCcEEEeeccccCcceeE
Q 002403 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE-DFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (927)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~-d~i~v~g~~~~kPfVeKpv~GedHni~I 161 (927)
|.==+..++.-+-||..+-+|..++|||+=+-+ ++ ...++ ....+. ..|++|+.+|++-|-
T Consensus 98 FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~----~g-------~~qs~e~~~~~a-~eIgyPvMiKa~~GG------ 159 (670)
T KOG0238|consen 98 FIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGY----HG-------EDQSDEEAKKVA-REIGYPVMIKATAGG------ 159 (670)
T ss_pred EECCCHHHHHHhcchHHHHHHHHhcCCccccCc----cc-------ccccHHHHHHHH-HhcCCcEEEEeccCC------
Confidence 333456788899999999999999999963321 21 11223 333333 457899999998885
Q ss_pred EeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCce
Q 002403 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVV 235 (927)
Q Consensus 162 Yyp~~~GgG~~rLfrki~n~sS~~~~~~~---~~r~~gsyIyeEFi~~~G~DIKvytVG~---~~vhAe~RkSPv~dG~v 235 (927)
-|.|. |++..-+.-.-.|...-+ ..=-+...+.|.||.. -+-|-|=|.|+ +++|--.|-+- .=
T Consensus 160 -----GGkGM-ria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l~ERdCS----vQ 228 (670)
T KOG0238|consen 160 -----GGKGM-RIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHLGERDCS----VQ 228 (670)
T ss_pred -----CCcce-EeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEEecccccc----hh
Confidence 23343 444433211111110000 0013455688999988 45566666664 56777778763 34
Q ss_pred eecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEE-eeCCCcEEEecCCcccc
Q 002403 236 MRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLL-RCEGRSYVCDVNGWSFV 292 (927)
Q Consensus 236 rrN~~gke~r~~v~Lt~eEk----~iA~k~~~afgq~VcG-fDlL-Rs~~~syV~DVNGwSFV 292 (927)
|||-.==|.+-.-.|+++-+ +-|.++|+|.|-.=+| |..| .+.+..|.+|+|--=-|
T Consensus 229 RRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 229 RRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred hhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 67766555555556666544 5789999999977666 4444 44667889999976555
No 96
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=78.24 E-value=1.1 Score=48.85 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=28.2
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC----CC--ceeEEEEECC
Q 002403 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVGP 218 (927)
Q Consensus 146 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~----~G--~DIKvytVG~ 218 (927)
-+|.||-.|. +|.|.. |++... .+.. ......+.||+|+||+. +| -|||+||+=.
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~~----~i~~--~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNLE----QILR--FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp -EEEEES------------------EE-EES-HH----HHHC--CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred EEEEeccccC-----------CCCCce-ecCCHH----HHHH--HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 5899998887 777763 666442 1110 01236889999999975 66 7999998733
No 97
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=76.54 E-value=1.8 Score=50.94 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=39.7
Q ss_pred cch--hhHHHhhc--cCCCCCchhhhcccc-cccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 492 NGV--NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 492 GGe--e~LG~~fR--Yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
|++ -.||+.+| |-. .|||-=+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 77 G~~~~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 77 GGELVTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 555 57999999 632 3554322222 457899988888999999999999988765
No 98
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=70.83 E-value=3.6 Score=39.30 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.8
Q ss_pred cceEeecCCchHHHHHHHHHhhhc
Q 002403 520 DLKIYSSDEGRVQMSAAAFAKGLL 543 (927)
Q Consensus 520 DlKIysSdEgRVq~TAaaFakg~L 543 (927)
-..||||+-.||+.||++|++++.
T Consensus 48 ~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 48 FDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCEEEECChHHHHHHHHHHHHHhc
Confidence 357999999999999999999985
No 99
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=70.11 E-value=5.9 Score=47.94 Aligned_cols=180 Identities=14% Similarity=0.164 Sum_probs=113.9
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 002403 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (927)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (927)
|+==+..++..+-||..+=.+..+.|||+=+-+ .+ .+++.+.+.--...+++|+.+|.--|-
T Consensus 102 fIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~----~g-------~~qd~~~~~~~A~eiGyPVlIKAsaGG------- 163 (645)
T COG4770 102 FIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGY----HG-------PIQDAAELVAIAEEIGYPVLIKASAGG------- 163 (645)
T ss_pred EECCCHHHHHHhccHHHHHHHHHHcCCCccCCC----CC-------cccCHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 333456789999999999999999999953221 12 223444443344568899999997765
Q ss_pred eccCCCChHHHHHhhcCCCcccccccccccc------cCcceEEeeccCCCCceeEEEEEC---CceeEEEeecCCCCCC
Q 002403 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVR------REGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDG 233 (927)
Q Consensus 163 yp~~~GgG~~rLfrki~n~sS~~~~~~~~~r------~~gsyIyeEFi~~~G~DIKvytVG---~~~vhAe~RkSPv~dG 233 (927)
||-++|+.++...-.-.|+. ..| -++..+.|.|+.. -+-|-+=|.| ++++|.=+|-+-
T Consensus 164 -----GGKGMRvv~~~~e~~e~l~s---arrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCS---- 230 (645)
T COG4770 164 -----GGKGMRVVETPEEFAEALES---ARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCS---- 230 (645)
T ss_pred -----CCCceEeecCHHHHHHHHHH---HHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccc----
Confidence 33223455554322222221 111 3778899999988 4455555555 568898888773
Q ss_pred ceeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEEee-CCCcEEEecCCccccc
Q 002403 234 VVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 293 (927)
Q Consensus 234 ~vrrN~~gke~r~~v~Lt~eEk----~iA~k~~~afgq~VcG-fDlLRs-~~~syV~DVNGwSFVK 293 (927)
.=|||--==|.+-.=-||++-+ +-|+++|++.|--=+| |..|-. .++.|.+|+|--=-|-
T Consensus 231 lQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVE 296 (645)
T COG4770 231 LQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVE 296 (645)
T ss_pred hhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceecc
Confidence 3456554444444445777665 3589999999976666 455554 4557788988655443
No 100
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=69.35 E-value=5 Score=46.81 Aligned_cols=51 Identities=29% Similarity=0.407 Sum_probs=38.4
Q ss_pred hhHHHhhc--cCCCCCchhhhcccc-cccceEeecCCchHHHHHHHHHhhhcccCCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~lege 548 (927)
-+||+.+| |=-.+ ++| -..| +.++.|+|||=-|+.+||++..+||+.-++.
T Consensus 80 ~~LG~~LR~rYvr~~-~fL--~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 80 FELGRFLRKRYVRYG-NFL--SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHhhcc-ccC--CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 36999998 42111 122 2222 7799999999999999999999999998754
No 101
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=68.66 E-value=3.2 Score=48.33 Aligned_cols=17 Identities=53% Similarity=0.933 Sum_probs=16.1
Q ss_pred cceEEEEEEEEcCCCCc
Q 002403 354 EELRCVIAVMRHGDRTP 370 (927)
Q Consensus 354 ~eLr~vvaViRHgDRTP 370 (927)
-+|.=|.+|.|||||||
T Consensus 32 ~~Lefv~~i~RHGdRaP 48 (411)
T KOG3720|consen 32 GELEFVQVIFRHGDRAP 48 (411)
T ss_pred CceEEEEEEeecCCCCc
Confidence 48999999999999999
No 102
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=68.31 E-value=12 Score=43.80 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=46.8
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---CCc--eeEEEEECCc
Q 002403 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 219 (927)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~---~G~--DIKvytVG~~ 219 (927)
.+|.||+-| |.-||-|+-+ |+. +.+.-| .|. +..+|||+|.+- +|. =|=+++||+.
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g----~y~--------~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDG----NYA--------EEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCC----CCC--------CCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 8778888753 222 222111 122 577899999975 453 3778999999
Q ss_pred eeEEEeecC
Q 002403 220 YAHAEARKS 228 (927)
Q Consensus 220 ~vhAe~RkS 228 (927)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 103
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=66.15 E-value=4.3 Score=47.84 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=30.8
Q ss_pred eeEEEeecchhHHHHHHHHHhc-CCccccccccchhhhhhhhhhcCCCCCcccccceEEEeecC
Q 002403 859 RTRLYFTSESHIHSLMNVLRYC-NLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 921 (927)
Q Consensus 859 RTRlYFTSESHIhSLLNvlr~~-~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~lyE~~ 921 (927)
|-.||.--.|.|-+|++.|..- .|+.. ...+| +=+-+|||+|++.
T Consensus 322 kl~~lvGHDTNIA~l~~~L~~~w~lp~q---------------~~~tP---pGg~LvFErw~d~ 367 (436)
T PRK10172 322 SVLFIAGHDTNLANLGGALELNWTLPGQ---------------PDNTP---PGGELVFERWRRL 367 (436)
T ss_pred eEEEEEecchhHHHHHHHhCCCccCCCC---------------CCCCC---CcceEEEEEEeeC
Confidence 6789999999999999998641 12211 11222 2478999999983
No 104
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=62.55 E-value=4.3 Score=46.46 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc-CcEEEeec
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW-KPFVEKPV 152 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~-kPfVeKpv 152 (927)
..+.++|++.|||+|++.++... ++....- ..++ .|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~------------~ea~~~~-~~ig~~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV------------EEAEEIA-AKLGAGPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH------------HHHHHHH-HHhCCCcEEEEec
Confidence 35778999999999999988541 2221111 1244 79999997
No 105
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=59.46 E-value=3.8 Score=44.08 Aligned_cols=47 Identities=36% Similarity=0.446 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002403 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (927)
Q Consensus 96 DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (927)
+-..++++|+..|||+|++.++.. .++....- ..++.|+|.|.++-.
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~------------~~ea~~~a-~~ig~PvvlKi~sp~ 57 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTS------------AEEAVAAA-EEIGFPVVLKIVSPD 57 (222)
T ss_dssp -HHHHHHHHHTTT------EEESS------------HHHHHHHH-HHH-SSEEEEEE-TT
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCC------------HHHHHHHH-HHhCCCEEEEEecCC
Confidence 346789999999999999999986 23333211 234589999999864
No 106
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=58.44 E-value=21 Score=44.07 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=50.4
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---CC--ceeEEEEECCc
Q 002403 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (927)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~---~G--~DIKvytVG~~ 219 (927)
.+|.||+-| |.-||-|+-+. |. .+.+.-| .|. +.-+|||+|.+- +| .=|=+++||++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~-~~~~~~g----~y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EE-VLDKTSG----KFA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----Cc-EeeccCC----CCC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 88888888542 22 1222222 133 567899999975 22 44778999999
Q ss_pred eeEEEeecCCCCCCceeec
Q 002403 220 YAHAEARKSPVVDGVVMRN 238 (927)
Q Consensus 220 ~vhAe~RkSPv~dG~vrrN 238 (927)
++..--|.+ ++.+-.|
T Consensus 592 ~aG~giRed---~~~IT~~ 607 (619)
T PRK10507 592 YGGTCLRGD---PSLVIKK 607 (619)
T ss_pred EEEEEEecC---CccccCC
Confidence 999999987 3555443
No 107
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=56.67 E-value=17 Score=44.98 Aligned_cols=178 Identities=21% Similarity=0.262 Sum_probs=111.1
Q ss_pred CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccC
Q 002403 87 ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (927)
Q Consensus 87 dl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~ 166 (927)
+.+-..-+-||-.+-++--++|||+=. ..++|-. ...|..++..- .+.|+|+|..-|-
T Consensus 138 speVi~~mGDKv~AR~~Ai~agVpvVP----GTpgPit---t~~EA~eF~k~----yG~PvI~KAAyGG----------- 195 (1176)
T KOG0369|consen 138 SPEVIDSMGDKVAARAIAIEAGVPVVP----GTPGPIT---TVEEALEFVKE----YGLPVIIKAAYGG----------- 195 (1176)
T ss_pred CHHHHHHhhhHHHHHHHHHHcCCCccC----CCCCCcc---cHHHHHHHHHh----cCCcEEEeecccC-----------
Confidence 445677889999999999999999522 2234331 12233333332 3479999998875
Q ss_pred CCChHHHHHhhcCCCcccccccccc-c--ccCcceEEeeccCCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCC
Q 002403 167 AGGGMKELFRKVGNRSSEFHPDVRR-V--RREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPD 240 (927)
Q Consensus 167 ~GgG~~rLfrki~n~sS~~~~~~~~-~--r~~gsyIyeEFi~~~G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~ 240 (927)
||-++|..|+...-.-.|.-..+. . =-+|+..+|.|++. -+-|-|=..| ++++|--.|-+-|. ||--.
T Consensus 196 -GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQ----RRHQK 269 (1176)
T KOG0369|consen 196 -GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQ----RRHQK 269 (1176)
T ss_pred -CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchh----hhhcc
Confidence 333334555543222212110000 1 15899999999987 4566676676 46899999977432 33222
Q ss_pred CCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEee-CCCcEEEecCCcccc
Q 002403 241 GKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 292 (927)
Q Consensus 241 gke~r~~v~Lt~eEk~----iA~k~~~afgq~VcG-fDlLRs-~~~syV~DVNGwSFV 292 (927)
==|++-.-.|.++-++ -|.|+|+..|-.=+| +..|-. +|+-|.+|||--=-|
T Consensus 270 VVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 270 VVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred eeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 3355555566666553 479999999987777 556655 577899999976554
No 108
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=50.85 E-value=12 Score=35.70 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.-.||+-||+++++++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 399999999999999999954
No 109
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=49.69 E-value=12 Score=43.80 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=40.5
Q ss_pred cch--hhHHHhhc-cCCCCCchhhhccc-ccccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 492 NGV--NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 492 GGe--e~LG~~fR-Yp~~~~gLlrLhst-~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
|++ ..+|+.+| |.. ..|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 75 G~~~~~~~G~~~r~~~~-~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 75 GGVLEVYMGHYMREWLA-QQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 666 67999999 322 3566532210 1247999999999999999999999987654
No 110
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=49.30 E-value=7.6 Score=41.28 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeecc
Q 002403 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 153 (927)
Q Consensus 99 ~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~ 153 (927)
.+-++|+++|||+|+..++... + +..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4678999999999999999873 1 2333332 554 589999964
No 111
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=45.81 E-value=8.9 Score=45.08 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee-eecCeeccCcEEEeec
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPV 152 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i-~v~g~~~~kPfVeKpv 152 (927)
..+.++|++.|||+|+..++... + +..... +++- -++|+|+|..
T Consensus 33 yqaK~LL~~~GIpvp~~~va~t~--e-------ea~~aa~~l~~--~~~pvVvKaq 77 (422)
T PLN00124 33 YQGAELMSKYGVNVPKGAAASSL--D-------EVKKALEKMFP--DEGEVVVKSQ 77 (422)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH--H-------HHHHHHHHhcc--cCCcEEEEEE
Confidence 45789999999999999988762 1 111111 1220 0369999998
No 112
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=44.58 E-value=24 Score=41.94 Aligned_cols=191 Identities=20% Similarity=0.289 Sum_probs=100.8
Q ss_pred eeEEEEeecCcccCChhHHHHHHHhhcCCceEEEE-------eCCceeecCCCcccCCcCee---------eccccCCCc
Q 002403 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIH-------FGDKVILEDPIEKWPICDCL---------IAFYSSGYP 69 (927)
Q Consensus 6 ~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~vii-------F~d~vIL~e~ve~wP~~D~l---------Isf~s~gfp 69 (927)
+.+|.|+=-.-..-+.=-..+..++.+.| ++.+| |.|..... .+-.+|++ |..++..=|
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G-~~~vI~d~~~L~y~~g~L~~----~~~~ID~VyRR~Vt~e~l~~~d~~~~ 259 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHG-YDCVICDPRDLEYRDGRLYA----GGRPIDAVYRRFVTSELLERYDEVQP 259 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcC-CceEecChHHceecCCEEEE----CCEeeehhhHhhhhHHhhhccccchH
Confidence 34566554444333333335555566666 55554 33444333 45566665 444444455
Q ss_pred hHHHHHHHHhcCCcccCCchhh--------hHhhhHHHHH------HHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 70 LEKAESYATLRKPFLVNELEPQ--------HLLHDRRKVY------EQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 70 l~kai~y~~lr~p~~iNdl~~q--------~~l~DR~~~l------qiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
|-.|++ .+....+|++.+| ++|||-.... +-+-+.. +|-|..+.... . ..--+.-|.
T Consensus 260 li~Ay~---~~av~~vgsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H--vP~T~~l~~~~-~---~~~g~~~dL 330 (445)
T PF14403_consen 260 LIQAYR---DGAVCMVGSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH--VPWTRLLTAGR-T---TYQGEDVDL 330 (445)
T ss_pred HHHHHh---cCCeEEecchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh--CCceEEEcCcc-c---cccccchhH
Confidence 655555 8888899999886 3455544322 2222333 45666665410 0 000011222
Q ss_pred ee--ecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCccccccccc--ccc--cCcceEEeeccCC--
Q 002403 136 VE--VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR--RVR--REGSYIYEEFMPT-- 206 (927)
Q Consensus 136 i~--v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~--~~r--~~gsyIyeEFi~~-- 206 (927)
++ +.. ..-+|+||.++- .|+||| | -+++++-+ .++ .++.||+|||+.-
T Consensus 331 ~~~~~a~---r~~lVLKP~D~Ygg~GV~~-----------------G---~e~~~eeW~~~l~~a~~~~yilQe~v~~~~ 387 (445)
T PF14403_consen 331 VEFAIAN---RDRLVLKPNDEYGGKGVYI-----------------G---WETSPEEWEAALEEAAREPYILQEYVRPPR 387 (445)
T ss_pred HHHHHhc---hhcEEeccccccCCCCeEE-----------------C---CcCCHHHHHHHHHHHhcCCcEEEEEecCCc
Confidence 21 122 246999999984 333333 2 22333222 122 3568999999864
Q ss_pred -------CCc--------eeEEEEECCceeEEEeecCCCCCCce
Q 002403 207 -------GGT--------DVKVYTVGPEYAHAEARKSPVVDGVV 235 (927)
Q Consensus 207 -------~G~--------DIKvytVG~~~vhAe~RkSPv~dG~v 235 (927)
+|+ ++=.|+-|++++.+-+|-|+ .+..
T Consensus 388 ~~~~~~~dg~~~~~~~~~~~g~fly~~~~~G~~tR~g~--~~vi 429 (445)
T PF14403_consen 388 EPMPAFEDGEVVFEEYPYDSGPFLYGGKFAGCYTRLGT--GNVI 429 (445)
T ss_pred cccccccCCceeEeeeeeeccceeECCEEEEEEEEecc--CCce
Confidence 121 23358889999999999995 4444
No 113
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=44.01 E-value=16 Score=36.49 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.-.|++.||+++++.+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 599999999999999998753
No 114
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=43.54 E-value=17 Score=35.18 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.-.|++.||+++++++
T Consensus 50 ~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 50 RIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred EEEECcHHHHHHHHHHHHHhc
Confidence 699999999999999999987
No 115
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.56 E-value=28 Score=30.60 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.9
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc
Q 002403 235 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 268 (927)
Q Consensus 235 vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afgq~ 268 (927)
|+.....-+..+|..||++|+.+.-.+|.-+|+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 4545557899999999999999999999999986
No 116
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=39.62 E-value=17 Score=42.26 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCCCCEEEEec
Q 002403 99 KVYEQLEKYGIPVPRYALVNR 119 (927)
Q Consensus 99 ~~lqiL~~~gIp~P~t~~~~r 119 (927)
.+.++|++.|||+|++.++..
T Consensus 7 eak~lL~~yGIpvp~~~~~~~ 27 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYS 27 (392)
T ss_pred HHHHHHHHcCCCCCCceEECC
Confidence 467899999999999999876
No 117
>PRK03482 phosphoglycerate mutase; Provisional
Probab=36.69 E-value=26 Score=36.59 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.-.|++-||+++++.+
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~~ 70 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQAC 70 (215)
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 699999999999999998753
No 118
>PRK13463 phosphatase PhoE; Provisional
Probab=36.05 E-value=26 Score=36.51 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKG 541 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (927)
.||||+-.|++-||++++..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred EEEECCcHHHHHHHHHHHhc
Confidence 59999999999999999763
No 119
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=34.78 E-value=14 Score=41.84 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=45.7
Q ss_pred eccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccC--cceEEeeccCCCCceeEEEEECCc
Q 002403 142 RFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGTDVKVYTVGPE 219 (927)
Q Consensus 142 ~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~--gsyIyeEFi~~~G~DIKvytVG~~ 219 (927)
.++.|+|.||+.|+ +|.|.+...+.+-+..-.-.+.-..+..+ .+.+.|+|. .|.|-++||.+.+
T Consensus 85 ~~giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~ 151 (317)
T COG1181 85 LLGIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAR 151 (317)
T ss_pred HhCCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCC
Confidence 34589999999999 88887544443322222222211122222 344444444 4788999999999
Q ss_pred eeEEEeecC
Q 002403 220 YAHAEARKS 228 (927)
Q Consensus 220 ~vhAe~RkS 228 (927)
...+--|.-
T Consensus 152 ~gSSvg~~~ 160 (317)
T COG1181 152 EGSSVGRSP 160 (317)
T ss_pred ccceeeEEE
Confidence 998887743
No 120
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=34.02 E-value=31 Score=40.48 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.9
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCcc-ccccccchhhhhhhhhhcCCCCCcccccceEEEeecC
Q 002403 859 RTRLYFTSESHIHSLMNVLRYCNLDE-SLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 921 (927)
Q Consensus 859 RTRlYFTSESHIhSLLNvlr~~~l~~-~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~lyE~~ 921 (927)
|-.+||.--|.|.+|++.|- +.. .+ . ..-..--|=+.|+||+|.+.
T Consensus 304 Kl~lysgHDtnIa~ll~ALg---l~~~~l------P--------~~~~~~P~g~~LvFEl~~d~ 350 (413)
T PRK10173 304 KVTVLVGHDSNIASLLTALD---FKPYQL------H--------DQYERTPIGGKIVFQRWHDS 350 (413)
T ss_pred CEEEEEEccccHHHHHHHhC---CCcccc------C--------CCCCcCCccceEEEEEEEeC
Confidence 46899999999999999983 331 11 0 01134568899999999974
No 121
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=33.05 E-value=32 Score=33.63 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.-.|++-||+++++.+
T Consensus 51 ~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 51 VIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 499999999999999998765
No 122
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=32.66 E-value=31 Score=35.51 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=20.3
Q ss_pred eEeecCCchHHHHHHHHHhhhcc
Q 002403 522 KIYSSDEGRVQMSAAAFAKGLLD 544 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~L~ 544 (927)
.||||+-.|++.||++.|+.+-.
T Consensus 53 ~i~sS~l~Ra~~TA~~~a~~~~~ 75 (208)
T COG0406 53 AIYSSPLKRAQQTAEPLAEELGL 75 (208)
T ss_pred EEEECchHHHHHHHHHHHHhcCC
Confidence 48999999999999999987643
No 123
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=31.19 E-value=34 Score=36.69 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++-||+++++++
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999766
No 124
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=30.57 E-value=34 Score=35.32 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.6
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKG 541 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (927)
+||||.-.|++.||++++++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred EEEECchHHHHHHHHHHHhc
Confidence 49999999999999999875
No 125
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=30.04 E-value=40 Score=33.85 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.=.|++.||+++++.+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 699999999999999999886
No 126
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=30.01 E-value=36 Score=35.20 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++-||+++++.+
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 599999999999999999865
No 127
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.69 E-value=36 Score=33.82 Aligned_cols=71 Identities=11% Similarity=0.241 Sum_probs=50.1
Q ss_pred eEEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchHHHHHHHHh
Q 002403 7 ITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATL 79 (927)
Q Consensus 7 ~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~l 79 (927)
-.||+|+|+--.... |+.++.+|.+.+--++.|+-.=.+.+++.+.|=...+ =.||+.|-|+...++++..
T Consensus 55 dii~iSsl~~~~~~~-~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 55 HVVGVSSLAGGHLTL-VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CEEEEcCchhhhHHH-HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHHHHHHHHH
Confidence 479999999655555 9999999988664355555554455666666655443 4677889999888887654
No 128
>PRK01295 phosphoglyceromutase; Provisional
Probab=24.83 E-value=54 Score=34.42 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+=.|++-||++++..+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 599999999999999998754
No 129
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=15 Score=44.20 Aligned_cols=72 Identities=19% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 002403 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (927)
Q Consensus 111 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~ 190 (927)
+|++++.-.| ..+.-++.+-+..+. +|+||-..- .|.|. |..+|.+
T Consensus 283 mPrtyilP~d--------~e~lrk~w~~nasr~---wIVkppasa-----------Rg~gI-rv~~kw~----------- 328 (662)
T KOG2156|consen 283 MPRTYILPAD--------REELRKYWEKNASRL---WIVKPPASA-----------RGIGI-RVINKWS----------- 328 (662)
T ss_pred cceeeecccc--------HHHHHHHHhhCcccc---EEecCcccc-----------cCcce-Eeccchh-----------
Q ss_pred ccccCcceEEeeccCC----CC--ceeEEEEE
Q 002403 191 RVRREGSYIYEEFMPT----GG--TDVKVYTV 216 (927)
Q Consensus 191 ~~r~~gsyIyeEFi~~----~G--~DIKvytV 216 (927)
.+.++...++|+||.. +| .|+|+||+
T Consensus 329 q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~ 360 (662)
T KOG2156|consen 329 QFPKDRPLVVQKYIERPLLINGSKFDLRLYVV 360 (662)
T ss_pred hCCCcccHHHHHHhhcceeecCcceeEEEEEE
No 130
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=24.14 E-value=56 Score=35.52 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+=.|++.||++++..+
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 699999999999999998654
No 131
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=22.89 E-value=67 Score=36.13 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEeecCCchHHHHHHHHHhhhc
Q 002403 522 KIYSSDEGRVQMSAAAFAKGLL 543 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~L 543 (927)
.||||+=.|++.||++++.++.
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 5999999999999999997764
No 132
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=22.03 E-value=62 Score=34.50 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=18.2
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKG 541 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (927)
.||||+=.|++.||++++.+
T Consensus 52 ~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 52 QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred EEEECChHHHHHHHHHHHHh
Confidence 59999999999999999765
No 133
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=21.77 E-value=67 Score=32.59 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.=.|++.||++++..+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (159)
T PRK10848 47 RVLVSPYLRAEQTLEVVGECL 67 (159)
T ss_pred EEEECCHHHHHHHHHHHHHHh
Confidence 499999999999999999876
No 134
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=21.62 E-value=75 Score=38.07 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=26.2
Q ss_pred eEeecCCchHHHHHHHHHhhhcccCCCCCc
Q 002403 522 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~L~legeltP 551 (927)
-|+++.--||..||++||-||.+-.+..-|
T Consensus 162 ~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t 191 (467)
T KOG1382|consen 162 NINTTASQRVVDSAQAFAYGLFGEDHFNIT 191 (467)
T ss_pred EeeccchHHHHHHHHHHHhhhccccccCCC
Confidence 488999999999999999999987776556
No 135
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=21.27 E-value=68 Score=34.12 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=18.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+=.|++.||+++++.+
T Consensus 52 ~i~sSpL~Ra~~TA~~i~~~~ 72 (228)
T PRK14119 52 VAFTSLLTRALDTTHYILTES 72 (228)
T ss_pred EEEeCccHHHHHHHHHHHHhc
Confidence 599999999999999998753
No 136
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=20.45 E-value=70 Score=34.13 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+=.|++.||+++++.+
T Consensus 51 ~i~sSpl~Ra~~TA~~i~~~~ 71 (227)
T PRK14118 51 IAFTSVLTRAIKTCNIVLEES 71 (227)
T ss_pred EEEEeChHHHHHHHHHHHHhc
Confidence 599999999999999998753
No 137
>PRK13462 acid phosphatase; Provisional
Probab=20.04 E-value=66 Score=33.77 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=15.9
Q ss_pred eEeecCCchHHHHHHHH
Q 002403 522 KIYSSDEGRVQMSAAAF 538 (927)
Q Consensus 522 KIysSdEgRVq~TAaaF 538 (927)
.||||+-.|++.||++.
T Consensus 56 ~i~sSpl~Ra~qTA~~i 72 (203)
T PRK13462 56 LVISSPRRRALDTAKLA 72 (203)
T ss_pred EEEECchHHHHHHHHHh
Confidence 59999999999999986
Done!