Query 002403
Match_columns 927
No_of_seqs 224 out of 445
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 00:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7a_A Inositol pyrophosphate 100.0 1E-120 4E-125 977.1 25.3 321 4-331 5-325 (330)
2 1i7n_A Synapsin II; synapse, p 100.0 2.5E-29 8.5E-34 272.0 14.8 219 55-313 67-302 (309)
3 2p0a_A Synapsin-3, synapsin II 100.0 7.6E-29 2.6E-33 271.8 14.5 221 56-316 85-322 (344)
4 1pk8_A RAT synapsin I; ATP bin 99.9 6.4E-28 2.2E-32 269.9 14.5 220 56-315 180-416 (422)
5 2q7d_A Inositol-tetrakisphosph 99.9 3.7E-26 1.3E-30 250.0 19.0 274 4-314 16-335 (346)
6 1z2n_X Inositol 1,3,4-trisphos 99.8 1.2E-20 3.9E-25 199.8 17.1 254 1-299 6-308 (324)
7 1uc8_A LYSX, lysine biosynthes 99.8 2.5E-20 8.4E-25 191.2 18.4 237 21-289 11-253 (280)
8 3ln6_A Glutathione biosynthesi 99.8 4.6E-19 1.6E-23 211.3 7.8 183 83-292 471-724 (750)
9 3ln7_A Glutathione biosynthesi 99.7 6.1E-19 2.1E-23 210.3 7.3 181 85-292 478-730 (757)
10 1gsa_A Glutathione synthetase; 99.7 2.6E-18 8.9E-23 178.8 6.8 198 53-289 76-285 (316)
11 3r5x_A D-alanine--D-alanine li 99.7 8.5E-18 2.9E-22 176.6 9.6 253 23-310 24-299 (307)
12 1iow_A DD-ligase, DDLB, D-ALA\ 99.7 1.3E-16 4.5E-21 166.2 15.7 235 24-289 24-274 (306)
13 4eg0_A D-alanine--D-alanine li 99.6 6.5E-15 2.2E-19 156.7 16.3 237 22-290 33-284 (317)
14 2fb9_A D-alanine:D-alanine lig 99.5 2.4E-14 8.3E-19 153.4 12.5 199 55-289 75-289 (322)
15 3se7_A VANA; alpha-beta struct 99.5 2E-13 6.8E-18 147.6 19.0 199 56-289 90-309 (346)
16 2pvp_A D-alanine-D-alanine lig 99.5 5.1E-14 1.7E-18 154.7 12.5 223 56-312 107-346 (367)
17 1e4e_A Vancomycin/teicoplanin 99.5 1.1E-13 3.7E-18 149.1 14.3 201 55-288 89-308 (343)
18 1ehi_A LMDDL2, D-alanine:D-lac 99.5 7.3E-14 2.5E-18 153.2 12.6 207 54-288 91-319 (377)
19 2i87_A D-alanine-D-alanine lig 99.5 1.1E-13 3.6E-18 150.5 12.1 208 55-289 86-310 (364)
20 3df7_A Putative ATP-grAsp supe 99.4 2.9E-13 1E-17 144.7 12.0 174 54-288 67-247 (305)
21 3i12_A D-alanine-D-alanine lig 99.4 3.6E-12 1.2E-16 139.1 18.1 229 55-312 97-353 (364)
22 3e5n_A D-alanine-D-alanine lig 99.4 4E-12 1.4E-16 140.5 18.5 230 55-313 116-373 (386)
23 3k3p_A D-alanine--D-alanine li 99.4 4.6E-13 1.6E-17 148.2 10.6 261 21-312 56-374 (383)
24 3lwb_A D-alanine--D-alanine li 99.4 4.1E-12 1.4E-16 139.7 15.6 205 56-289 109-334 (373)
25 3tqt_A D-alanine--D-alanine li 99.4 4.9E-12 1.7E-16 139.4 15.3 229 55-311 97-353 (372)
26 2pn1_A Carbamoylphosphate synt 99.4 2E-12 6.7E-17 137.0 11.0 191 56-288 72-270 (331)
27 2ip4_A PURD, phosphoribosylami 99.3 1.3E-12 4.6E-17 143.7 8.7 201 56-288 61-280 (417)
28 2dwc_A PH0318, 433AA long hypo 99.3 2.6E-12 9E-17 142.0 11.1 194 56-289 82-295 (433)
29 1kjq_A GART 2, phosphoribosylg 99.3 1.5E-12 5.1E-17 141.3 8.8 196 56-288 74-281 (391)
30 3ax6_A Phosphoribosylaminoimid 99.3 8.6E-12 2.9E-16 135.5 14.6 188 56-289 62-261 (380)
31 2z04_A Phosphoribosylaminoimid 99.3 1.7E-11 5.8E-16 132.2 16.8 192 56-289 57-254 (365)
32 3aw8_A PURK, phosphoribosylami 99.3 2.4E-12 8.2E-17 139.3 9.5 195 56-289 59-262 (369)
33 4fu0_A D-alanine--D-alanine li 99.3 2.8E-12 9.7E-17 139.5 8.1 201 56-289 97-316 (357)
34 4dim_A Phosphoribosylglycinami 99.3 2.9E-12 9.8E-17 139.8 8.1 197 56-289 71-279 (403)
35 1vkz_A Phosphoribosylamine--gl 99.3 4E-12 1.4E-16 140.4 8.4 237 21-288 25-288 (412)
36 2yrx_A Phosphoribosylglycinami 99.3 2.8E-12 9.7E-17 143.1 6.0 207 56-288 83-307 (451)
37 2yw2_A Phosphoribosylamine--gl 99.3 4E-12 1.4E-16 140.0 7.2 207 56-289 62-287 (424)
38 2xcl_A Phosphoribosylamine--gl 99.2 2.2E-12 7.4E-17 142.0 3.6 206 56-288 62-286 (422)
39 3vot_A L-amino acid ligase, BL 99.2 3.4E-11 1.1E-15 132.9 12.6 203 57-288 76-289 (425)
40 3q2o_A Phosphoribosylaminoimid 99.2 9E-11 3.1E-15 128.4 15.1 233 8-290 16-279 (389)
41 4ffl_A PYLC; amino acid, biosy 99.2 7E-11 2.4E-15 127.6 13.2 176 56-288 63-242 (363)
42 3lp8_A Phosphoribosylamine-gly 99.2 1.6E-11 5.4E-16 137.8 8.4 207 56-289 83-308 (442)
43 2qk4_A Trifunctional purine bi 99.2 7E-12 2.4E-16 139.7 4.7 207 56-289 88-314 (452)
44 3k5i_A Phosphoribosyl-aminoimi 99.2 1.8E-10 6.1E-15 127.6 14.8 185 71-290 99-292 (403)
45 3mjf_A Phosphoribosylamine--gl 99.2 2.5E-11 8.5E-16 135.7 7.9 205 57-288 68-292 (431)
46 4e4t_A Phosphoribosylaminoimid 99.2 2.5E-10 8.5E-15 127.4 15.6 189 56-289 96-303 (419)
47 3eth_A Phosphoribosylaminoimid 99.2 2.4E-10 8.1E-15 125.6 15.0 189 56-289 42-242 (355)
48 2w70_A Biotin carboxylase; lig 99.2 2.9E-11 1E-15 134.3 7.5 198 56-289 74-292 (449)
49 3orq_A N5-carboxyaminoimidazol 99.2 4.5E-10 1.5E-14 123.0 16.8 190 56-290 73-275 (377)
50 3ouz_A Biotin carboxylase; str 99.1 9.2E-11 3.1E-15 130.6 9.5 199 56-290 78-297 (446)
51 1ulz_A Pyruvate carboxylase N- 99.1 6.8E-11 2.3E-15 131.4 8.4 197 56-289 73-291 (451)
52 2r85_A PURP protein PF1517; AT 99.1 9.1E-11 3.1E-15 123.7 8.0 190 57-288 63-286 (334)
53 2vpq_A Acetyl-COA carboxylase; 99.1 1.1E-10 3.8E-15 129.7 8.3 200 55-290 72-293 (451)
54 2dzd_A Pyruvate carboxylase; b 99.1 1.6E-10 5.6E-15 128.9 7.8 198 56-290 79-297 (461)
55 3n6r_A Propionyl-COA carboxyla 99.0 7.1E-10 2.4E-14 131.3 12.5 200 56-290 74-293 (681)
56 3vmm_A Alanine-anticapsin liga 99.0 1.4E-09 4.7E-14 123.6 11.7 206 56-288 102-329 (474)
57 3glk_A Acetyl-COA carboxylase 98.9 5E-10 1.7E-14 129.4 6.6 212 56-290 123-365 (540)
58 3jrx_A Acetyl-COA carboxylase 98.9 7.6E-10 2.6E-14 129.2 7.6 212 56-290 139-381 (587)
59 1a9x_A Carbamoyl phosphate syn 98.9 1.7E-09 5.7E-14 133.8 10.9 196 56-288 82-302 (1073)
60 3u9t_A MCC alpha, methylcroton 98.9 7.2E-10 2.5E-14 131.1 6.2 202 56-290 100-319 (675)
61 2qf7_A Pyruvate carboxylase pr 98.9 5.8E-09 2E-13 130.1 13.6 200 56-289 93-312 (1165)
62 1a9x_A Carbamoyl phosphate syn 98.9 5.7E-09 1.9E-13 129.1 12.8 199 56-288 634-844 (1073)
63 1w96_A ACC, acetyl-coenzyme A 98.8 7.8E-10 2.7E-14 127.3 2.9 206 56-288 130-370 (554)
64 3hbl_A Pyruvate carboxylase; T 98.8 6E-09 2.1E-13 129.7 10.6 198 56-289 77-294 (1150)
65 3va7_A KLLA0E08119P; carboxyla 98.8 1.1E-08 3.9E-13 128.0 12.8 201 56-289 103-321 (1236)
66 2pbz_A Hypothetical protein; N 98.4 1.5E-06 5E-11 94.8 13.0 170 78-288 80-267 (320)
67 2r7k_A 5-formaminoimidazole-4- 97.9 1.6E-05 5.4E-10 87.8 8.9 178 79-288 107-313 (361)
68 1nd6_A Prostatic acid phosphat 97.8 0.00023 7.7E-09 76.4 15.3 47 495-547 47-96 (354)
69 3it3_A Acid phosphatase; HAP, 97.7 0.00027 9.2E-09 77.1 14.2 51 495-548 49-102 (342)
70 2cqy_A Propionyl-COA carboxyla 97.4 4.3E-07 1.5E-11 80.9 -11.2 51 92-155 4-56 (108)
71 1wr2_A Hypothetical protein PH 97.1 2.6E-05 8.7E-10 80.4 -3.8 101 94-219 19-130 (238)
72 1dkq_A Phytase; histidine acid 97.0 0.00093 3.2E-08 74.3 7.5 51 492-546 51-108 (410)
73 2io8_A Bifunctional glutathion 94.1 0.29 9.9E-06 57.9 12.5 114 75-228 477-600 (619)
74 2nu8_B SCS-beta, succinyl-COA 90.5 0.34 1.1E-05 54.1 6.7 45 97-154 5-50 (388)
75 2gfi_A Phytase; hydrolase; HET 90.1 0.24 8.4E-06 55.8 5.2 55 495-557 138-194 (458)
76 3it3_A Acid phosphatase; HAP, 89.8 0.14 4.8E-06 55.7 2.8 61 709-778 181-245 (342)
77 1qfx_A Protein (PH 2.5 acid ph 88.7 0.21 7.2E-06 56.5 3.3 47 492-546 122-172 (460)
78 1qwo_A Phytase; alpha barrel, 88.0 0.25 8.4E-06 55.3 3.2 43 495-546 113-157 (442)
79 3k4q_A 3-phytase A; PHYA, 3-ph 86.9 0.52 1.8E-05 53.3 5.1 44 495-547 114-159 (444)
80 2wnh_A 3-phytase; histidine ac 86.8 0.3 1E-05 54.3 3.1 49 495-547 65-117 (418)
81 1nd6_A Prostatic acid phosphat 86.2 0.32 1.1E-05 52.0 2.8 40 859-920 250-289 (354)
82 2fp4_B Succinyl-COA ligase [GD 84.6 0.23 7.9E-06 55.6 0.7 42 98-152 6-48 (395)
83 3ufx_B Succinyl-COA synthetase 84.0 0.91 3.1E-05 50.8 5.2 44 98-154 6-49 (397)
84 3ntl_A Acid glucose-1-phosphat 82.4 0.6 2.1E-05 52.2 2.9 49 495-547 56-109 (398)
85 3ntl_A Acid glucose-1-phosphat 82.3 0.56 1.9E-05 52.5 2.7 48 858-921 279-326 (398)
86 3tig_A TTL protein; ATP-grAsp, 81.6 0.31 1.1E-05 54.5 0.3 56 144-217 147-210 (380)
87 2wnh_A 3-phytase; histidine ac 81.0 0.85 2.9E-05 50.7 3.5 22 352-373 12-33 (418)
88 3n6x_A Putative glutathionylsp 69.0 4.2 0.00014 46.8 5.1 51 194-244 399-466 (474)
89 2gfi_A Phytase; hydrolase; HET 62.4 3.2 0.00011 46.7 2.5 21 352-372 57-77 (458)
90 1qwo_A Phytase; alpha barrel, 61.3 3.5 0.00012 45.9 2.5 20 352-371 45-64 (442)
91 2vob_A Trypanothione synthetas 60.2 9.2 0.00031 45.6 5.9 66 146-228 544-615 (652)
92 1qfx_A Protein (PH 2.5 acid ph 56.9 4.6 0.00016 45.6 2.5 21 352-372 50-70 (460)
93 1ujc_A Phosphohistidine phosph 47.6 9.5 0.00033 36.5 2.7 21 522-542 47-67 (161)
94 2rfl_A Putative phosphohistidi 46.5 11 0.00036 36.6 2.9 21 522-542 57-77 (173)
95 3mxo_A Serine/threonine-protei 40.5 13 0.00043 36.6 2.4 21 522-542 57-77 (202)
96 1qhf_A Protein (phosphoglycera 37.9 16 0.00056 36.8 2.8 21 522-542 51-71 (240)
97 3eoz_A Putative phosphoglycera 37.9 15 0.00051 36.8 2.5 21 522-542 71-91 (214)
98 3hjg_A Putative alpha-ribazole 37.8 16 0.00055 36.5 2.7 21 522-542 51-71 (213)
99 3kkk_A Phosphoglycerate mutase 37.6 17 0.00057 37.0 2.9 21 522-542 62-82 (258)
100 1fzt_A Phosphoglycerate mutase 37.4 16 0.00055 36.2 2.6 21 522-542 58-78 (211)
101 3gp3_A 2,3-bisphosphoglycerate 37.2 17 0.00058 37.0 2.9 21 522-542 60-80 (257)
102 3e9c_A ZGC:56074; histidine ph 34.2 19 0.00065 37.2 2.6 21 522-542 53-73 (265)
103 3c7t_A Ecdysteroid-phosphate p 33.7 21 0.00072 36.6 2.9 21 522-542 84-104 (263)
104 1h2e_A Phosphatase, YHFR; hydr 33.6 19 0.00066 35.6 2.5 21 522-542 50-70 (207)
105 1e58_A Phosphoglycerate mutase 33.5 21 0.00073 36.1 2.9 21 522-542 53-73 (249)
106 3mbk_A Ubiquitin-associated an 33.4 21 0.00073 36.5 2.9 21 522-542 82-102 (264)
107 3r7a_A Phosphoglycerate mutase 33.3 21 0.00073 35.8 2.8 22 522-543 62-83 (237)
108 2qni_A AGR_C_517P, uncharacter 33.2 17 0.00059 36.8 2.1 21 522-542 67-87 (219)
109 3d4i_A STS-2 protein; PGM, 2H- 32.6 22 0.00077 36.5 2.9 21 522-542 91-111 (273)
110 1yfk_A Phosphoglycerate mutase 32.5 22 0.00076 36.6 2.8 21 522-542 54-74 (262)
111 3d8h_A Glycolytic phosphoglyce 31.8 23 0.0008 36.5 2.9 21 522-542 71-91 (267)
112 4eo9_A 2,3-bisphosphoglycerate 30.8 25 0.00085 36.3 2.8 21 522-542 78-98 (268)
113 2hhj_A Bisphosphoglycerate mut 30.6 25 0.00086 36.2 2.9 21 522-542 54-74 (267)
114 4emb_A 2,3-bisphosphoglycerate 30.0 26 0.00089 36.2 2.8 21 522-542 78-98 (274)
115 3f2i_A ALR0221 protein; alpha- 29.5 27 0.00093 34.2 2.7 20 522-541 49-68 (172)
116 3dcy_A Regulator protein; OMIM 26.9 28 0.00097 36.0 2.5 21 522-542 58-78 (275)
117 1rii_A 2,3-bisphosphoglycerate 23.9 39 0.0013 35.2 2.8 21 522-542 55-75 (265)
118 3f3k_A Uncharacterized protein 23.8 30 0.001 35.5 2.0 21 522-542 61-81 (265)
119 1dkq_A Phytase; histidine acid 22.8 1.2E+02 0.0041 33.4 6.7 47 858-921 295-341 (410)
No 1
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=1.1e-120 Score=977.07 Aligned_cols=321 Identities=57% Similarity=1.057 Sum_probs=310.1
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchHHHHHHHHhcCCc
Q 002403 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPF 83 (927)
Q Consensus 4 ~~~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~ 83 (927)
.++++|||||||+||+|||||+||+||.++++||||||+|+|||++|||+||.|||||||||+||||+|||+|+++|+||
T Consensus 5 ~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr~p~ 84 (330)
T 3t7a_A 5 ERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPF 84 (330)
T ss_dssp -CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHHCCE
T ss_pred CCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 002403 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (927)
Q Consensus 84 ~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (927)
+|||+.+|.++|||+++|++|+++|||||+|++++++++.+....+++.+|+|+++|++++||||+||++||||||||||
T Consensus 85 ~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyy 164 (330)
T 3t7a_A 85 VINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYY 164 (330)
T ss_dssp ESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCCCEEEC
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEcccccccCcceeec
Confidence 99999999999999999999999999999999999986444446789999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCc
Q 002403 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (927)
Q Consensus 164 p~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke 243 (927)
|++|||||+|||||+||+||+|+|++ .+|++++|||||||+++|+||||||||++|||||+|+||++||+||||+||||
T Consensus 165 p~s~GgG~~RLfrki~n~sS~~~~~~-~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp~~~G~~r~N~~gG~ 243 (330)
T 3t7a_A 165 PTSAGGGSQRLFRKIGSRSSVYSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKE 243 (330)
T ss_dssp CGGGTCCEEEEEEEETTEEEEEESCC-SCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECTTSSCBCCBCTTSCB
T ss_pred ccccCCchhhhhhhhCCcccccChhh-hhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCCCCCCcEEEcCCCCc
Confidence 99999999999999999999999987 67999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCccccccchhhHHHHHHHHHHHHHHhhCCCCCCCCC
Q 002403 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIP 323 (927)
Q Consensus 244 ~r~~v~Lt~eEk~iA~k~~~afgq~VcGfDlLRs~~~syV~DVNGwSFVK~n~~YYd~cA~iL~~~~l~~~~~~~~~~~~ 323 (927)
+|++|+||+||++||.|||+||||+||||||||++++|||||||||||||+|.+|||+||+||+.+||++++|+.
T Consensus 244 ~~~~v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~~~~~~~----- 318 (330)
T 3t7a_A 244 VRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQF----- 318 (330)
T ss_dssp CCEECCCCHHHHHHHHHHHHHTTBSEEEEEEEEETTEEEEEEEEESCCCSSCHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred eeeeecCCHHHHHHHHHHHHHhCCceEEEEEEEECCccEEEEeCCCccccCchhHHHHHHHHHHHHHHHHhCccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCC
Q 002403 324 PILPWKVN 331 (927)
Q Consensus 324 ~~~~~~~~ 331 (927)
++||+.+
T Consensus 319 -~~~~~~~ 325 (330)
T 3t7a_A 319 -HIPWSIP 325 (330)
T ss_dssp -TCCCCC-
T ss_pred -CCcccCC
Confidence 5677653
No 2
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.96 E-value=2.5e-29 Score=272.04 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=171.6
Q ss_pred CCcCeeeccccCCC-----chHHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCCEEEEeccCC
Q 002403 55 PICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVP 122 (927)
Q Consensus 55 P~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---p~P~t~~~~r~~p 122 (927)
+..|++|.+-.+.. ....++++++.+|.+++|++.+...++|| ..++++|.+.|+ |+|.+.+...
T Consensus 67 ~~~D~vi~R~~~~~~~~~~~~r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~--- 143 (309)
T 1i7n_A 67 FRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN--- 143 (309)
T ss_dssp ECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS---
T ss_pred ccCCEEEEecccccccccchHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCC---
Confidence 46799999887765 22577889999999999999999999999 778999999999 8555544422
Q ss_pred CccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEe
Q 002403 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYE 201 (927)
Q Consensus 123 ~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIye 201 (927)
..+.+.. ++.|+|+||+.|+ +|-|+. |++......+..+ .++ .+..++.|
T Consensus 144 ---------~~~~~~~----~g~PvVvK~~~Gs-----------~G~GV~-lv~~~~~~~~~~~----~~~~~~~~~~vQ 194 (309)
T 1i7n_A 144 ---------HREMLTL----PTFPVVVKIGHAH-----------SGMGKV-KVENHYDFQDIAS----VVALTQTYATAE 194 (309)
T ss_dssp ---------GGGGSSC----CCSSEEEEESSCS-----------TTTTEE-EECSHHHHHHHHH----HHHHHTCCEEEE
T ss_pred ---------hhhhhhc----cCCCEEEEeCCCC-----------ceeCeE-EECCHHHHHHHHH----HHhccCCeEEEE
Confidence 1223331 3589999999999 998984 6655543333332 223 34567789
Q ss_pred eccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeCCC
Q 002403 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR 280 (927)
Q Consensus 202 EFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~af-gq~VcGfDlLRs~~~ 280 (927)
|||+ .|.||||+|||++++ |+.|+|+ .|.|++|.+ ++...++.+|++++++|.+|+++| |+.+||||||++.+|
T Consensus 195 efI~-~g~DiRv~VvGg~v~-a~~Rr~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~g 269 (309)
T 1i7n_A 195 PFID-AKYDIRVQKIGNNYK-AYMRTSI--SGNWKTNTG-SAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDG 269 (309)
T ss_dssp ECCC-EEEEEEEEEETTEEE-EEEEESS--CTTTSCSCC-CSSEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTS
T ss_pred eecC-CCceEEEEEECCEEE-EEEEEcC--CCCCeecCC-cceeeecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Confidence 9999 799999999999987 6777786 899999996 577789999999999999999999 799999999999877
Q ss_pred -cEEEecCC--ccccccchhhHHHHHHHHHHHHHHh
Q 002403 281 -SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEA 313 (927)
Q Consensus 281 -syV~DVNG--wSFVK~n~~YYd~cA~iL~~~~l~~ 313 (927)
+||||||+ .++.++... +.+.-+.++++..
T Consensus 270 ~~~V~EVN~~~~P~~~~~~~---~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 270 KDYIFEVMDCSMPLIGEHQV---EDRQLITDLVISK 302 (309)
T ss_dssp CEEEEEEECTTCCCCSSCHH---HHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCccchhh---hhHHHHHHHHHHH
Confidence 58999999 999986654 4444444444444
No 3
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.96 E-value=7.6e-29 Score=271.77 Aligned_cols=221 Identities=14% Similarity=0.144 Sum_probs=172.0
Q ss_pred CcCeeeccccCCC-----chHHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCC
Q 002403 56 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 123 (927)
Q Consensus 56 ~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---p~P~t~~~~r~~p~ 123 (927)
..|++|.+-.+.. ....++++++.+|.+++|++.+...++|| ..++++|.+.|+ |+|.+.+...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~---- 160 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPN---- 160 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESS----
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCc----
Confidence 6799999987743 12467889999999999999999999999 889999999999 8555544422
Q ss_pred ccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEee
Q 002403 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 202 (927)
Q Consensus 124 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIyeE 202 (927)
..+.+.. ++.|+|+||+.|+ +|-|+. |++......+..+ .+. .+..+++||
T Consensus 161 --------~~~~~~~----~g~PvVvK~~~Gs-----------~G~GV~-lve~~~~~~~~~~----~~~~~~~~~~vQe 212 (344)
T 2p0a_A 161 --------HKPMVTA----PHFPVVVKLGHAH-----------AGMGKI-KVENQLDFQDITS----VVAMAKTYATTEA 212 (344)
T ss_dssp --------STTCCCC----SSSSEEEEESSCC-----------TTTTEE-EECSHHHHHHHHH----HHHHHTCCEEEEE
T ss_pred --------hhhhhhc----cCCCEEEEeCCCC-----------ceeCeE-EECCHHHHHHHHH----HHhccCCeEEEEe
Confidence 1233332 3589999999999 999984 6665543333332 222 345667899
Q ss_pred ccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeCCCc
Q 002403 203 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGRS 281 (927)
Q Consensus 203 Fi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~af-gq~VcGfDlLRs~~~s 281 (927)
||+ .|.||||||||++++ |+.|+++ .|.|++|.+ ++...++.+|++++++|.+|+++| |+.+||||||++.+|+
T Consensus 213 fI~-~g~DiRv~VVGg~vv-a~~R~~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~G~ 287 (344)
T 2p0a_A 213 FID-SKYDIRIQKIGSNYK-AYMRTSI--SGNWKANTG-SAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 287 (344)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-SEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ccC-CCccEEEEEECCEEE-EEEEecC--CCCCeecCC-ceEEEeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999998 5666675 899999996 577789999999999999999999 7999999999998774
Q ss_pred -EEEecCC--ccccccchhhHHHHHHHHHHHHHHhhCC
Q 002403 282 -YVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKAP 316 (927)
Q Consensus 282 -yV~DVNG--wSFVK~n~~YYd~cA~iL~~~~l~~~~~ 316 (927)
||||||+ -++.++.. .+++.-+...+++.+..
T Consensus 288 ~~VlEVN~~~~P~~~~~~---~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 288 DYIIEVMDSSMPLIGEHV---EEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp EEEEEEECTTCCCCGGGH---HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCcccchh---hhHHHHHHHHHHHHHHH
Confidence 8999999 66666444 45565566666666543
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.95 E-value=6.4e-28 Score=269.90 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=171.3
Q ss_pred CcCeeeccccCCC-----chHHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCC
Q 002403 56 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 123 (927)
Q Consensus 56 ~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---p~P~t~~~~r~~p~ 123 (927)
..|++|.+-.+.. ....++++++..+.++||++.+..+++|| ..++++|.+.|+ |+|.+.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~---- 255 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPN---- 255 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS----
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCc----
Confidence 6799999887655 12577899999999999999999999999 678999999999 8444444422
Q ss_pred ccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEee
Q 002403 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 202 (927)
Q Consensus 124 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-~~gsyIyeE 202 (927)
..+.+.. ++.|+|+||+.|+ +|-|+. |++......+..+ .++ .+..+++||
T Consensus 256 --------~~~~i~~----~g~PvVvKp~~GS-----------~G~GV~-lve~~~~l~~ii~----~~~~~~~~~~vQE 307 (422)
T 1pk8_A 256 --------HKEMLSS----TTYPVVVKMGHAH-----------SGMGKV-KVDNQHDFQDIAS----VVALTKTYATAEP 307 (422)
T ss_dssp --------GGGCCCC----SSSSEEEEESSCC-----------TTTTEE-EECSHHHHHHHHH----HHHHHTSCEEEEE
T ss_pred --------hhhhhhc----cCCCEEEEeCCCC-----------ceeCeE-EeCCHHHHHHHHH----HHhccCceEEEEe
Confidence 1223332 4589999999999 999984 6665543333332 333 345667899
Q ss_pred ccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeCCC-
Q 002403 203 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR- 280 (927)
Q Consensus 203 Fi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~af-gq~VcGfDlLRs~~~- 280 (927)
||+ .|.||||+|||++++ |+.|+++ .|.||+|++ ++...++.||++++++|.+|+++| |+.|||||||++.+|
T Consensus 308 fI~-~g~DIRv~VVGg~vv-a~~Rr~~--~g~WrtNvg-~g~~e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~dG~ 382 (422)
T 1pk8_A 308 FID-AKYDVRVQKIGQNYK-AYMRTSV--SGNWKTNTG-SAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGR 382 (422)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-CEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ecC-CCceEEEEEECCEEE-EEEEEcC--CCCceeccC-ceeeeeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999998 6666665 899999996 577789999999999999999999 899999999999877
Q ss_pred cEEEecCC--ccccccchhhHHHHHHHHHHHHHHhhC
Q 002403 281 SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKA 315 (927)
Q Consensus 281 syV~DVNG--wSFVK~n~~YYd~cA~iL~~~~l~~~~ 315 (927)
.||||||+ -++.++... +.+.-+.++++..+.
T Consensus 383 ~~VlEVN~s~~P~~~g~~~---~~~~~IA~~ii~~i~ 416 (422)
T 1pk8_A 383 DHIIEVVGSSMPLIGDHQD---EDKQLIVELVVNKMT 416 (422)
T ss_dssp EEEEEEECTTCCCCTTCHH---HHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCccchhh---hHHHHHHHHHHHHHH
Confidence 58999999 566665553 555555556566553
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.94 E-value=3.7e-26 Score=250.02 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=194.2
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCc-----------hHH
Q 002403 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYP-----------LEK 72 (927)
Q Consensus 4 ~~~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfp-----------l~k 72 (927)
.+..+||.|--.+|.++--.+.++.-+.+.| ++++.+.-. .+......+|++|......++ ...
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G-~~~~~iD~~----~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRG-MEVVQLNLS----RPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTT-CEEEECCTT----SCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred cCceEEEEEECcccchhhhHHHHHHHHHhCC-cEEEEcccc----cchhhcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 4567899999999988887788888887766 677666543 333445689999999876433 123
Q ss_pred HHHHHH--hcCCcccCCchhhhHhhhHHHHHHHHHhC-------CCCCCCEEEEeccCCCccccccccccceeeecCeec
Q 002403 73 AESYAT--LRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143 (927)
Q Consensus 73 ai~y~~--lr~p~~iNdl~~q~~l~DR~~~lqiL~~~-------gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~ 143 (927)
.++.+. ..+.++||+..++..++||+.++++|++. |||+|+|+++.+..+. +..+.+...+ +
T Consensus 91 ~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~-------~~~~~~~~~~--l 161 (346)
T 2q7d_A 91 RFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-------DTMRLLEKNG--L 161 (346)
T ss_dssp HHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCT-------THHHHHHHTT--C
T ss_pred HHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHH-------HHHHHHHhcC--C
Confidence 333333 34889999999999999999999999997 9999999999763111 1122222122 4
Q ss_pred cCcEEEeecccc---CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce
Q 002403 144 WKPFVEKPVHGD---DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY 220 (927)
Q Consensus 144 ~kPfVeKpv~Ge---dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~ 220 (927)
+.|+|+||+.|+ -|++.+-+. ... +. . .+..+++||||+.+|.|+||||||+.+
T Consensus 162 g~P~VvKP~~g~Gs~s~~v~~v~~----------------~~~-l~----~--~~~~~lvQefI~~~G~dirv~VvG~~v 218 (346)
T 2q7d_A 162 TFPFICKTRVAHGTNSHEMAIVFN----------------QEG-LN----A--IQPPCVVQNFINHNAVLYKVFVVGESY 218 (346)
T ss_dssp CSSEEEECSBCSSTTCCEEEEECS----------------GGG-TT----C----CCEEEEECCCCTTEEEEEEEETTEE
T ss_pred CCCEEEEecCCCcceeeeeEEecC----------------HHH-HH----h--cCCCEEEEEeeCCCCeEEEEEEECCEE
Confidence 689999999763 233332221 111 11 1 246699999999899999999999999
Q ss_pred eEEEeecCCCC-CC-------ceee-cCC-CCceee---------eeeC--CHHHHHHHHHHHHHhCCceeEEEEEeeC-
Q 002403 221 AHAEARKSPVV-DG-------VVMR-NPD-GKEVRY---------PVLL--TPNEKQMAREVCIAFRQAVCGFDLLRCE- 278 (927)
Q Consensus 221 vhAe~RkSPv~-dG-------~vrr-N~~-gke~r~---------~v~L--t~eEk~iA~k~~~afgq~VcGfDlLRs~- 278 (927)
+++++|..|-+ .| .|.+ |.+ +|+.++ ...+ +++.+++|.++++++|++++|||++++.
T Consensus 219 ~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~ 298 (346)
T 2q7d_A 219 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ 298 (346)
T ss_dssp EEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTT
T ss_pred EEEEEecCCCcCcCccccccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecC
Confidence 98866655411 01 2332 323 344321 2333 4688999999999999999999999986
Q ss_pred -CCcEEEecCCccccccchhhHHHHHHHHHHHHHHhh
Q 002403 279 -GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAK 314 (927)
Q Consensus 279 -~~syV~DVNGwSFVK~n~~YYd~cA~iL~~~~l~~~ 314 (927)
|++||+|||.|+=.++-.+|...+.++|....-+.-
T Consensus 299 ~g~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~ 335 (346)
T 2q7d_A 299 TGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQS 335 (346)
T ss_dssp TCCEEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCccccccchHHHHHHHHHHHHhhccC
Confidence 679999999999899888998888887777664443
No 6
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.85 E-value=1.2e-20 Score=199.83 Aligned_cols=254 Identities=17% Similarity=0.231 Sum_probs=169.9
Q ss_pred CCCCCeeEEEEeecCcccCChhHHHHHHHhhcCCceEE--EEeCCceeecCCCcccC-CcCeeeccccCCCc-hHHHHHH
Q 002403 1 MEVHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV--IHFGDKVILEDPIEKWP-ICDCLIAFYSSGYP-LEKAESY 76 (927)
Q Consensus 1 ~~~~~~~~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~v--iiF~d~vIL~e~ve~wP-~~D~lIsf~s~gfp-l~kai~y 76 (927)
|...+..+|||+.-+++. |- .+...+.+. .+++ +++.-. .|...+- .+|+++...+.-.. +..+++.
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~-G~~v~~~~~d~~----~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~ 76 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHT-QFELNNIIFDVT----LSTELPDKEPNAIITKRTHPVGKMADEMRK 76 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEE-EEEETTEEEEEE----EESSCCSSCCSEEEECCSCSSSHHHHHHHH
T ss_pred cccCCcEEEEEEEchhhh-hh---hHHHHHHhc-CcEEEEEEecCC----CCccccCCCceEEEEeccchHHHHHHHHHH
Confidence 445566789998855443 21 233333333 3777 777542 2333222 57988877644332 2455555
Q ss_pred HHh--cCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc
Q 002403 77 ATL--RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (927)
Q Consensus 77 ~~l--r~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G 154 (927)
+.. .+..++|+..+..++.||...+++|+++|||+|++.++.+.. +..+.+.-.| ++.|+|+||..|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~~---------~~~~~~~~~~--~~~P~vvKP~~g 145 (324)
T 1z2n_X 77 YEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKE---------EVIQLLQSKQ--LILPFIVKPENA 145 (324)
T ss_dssp HHHHCTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHH---------HHHHHHHTTC--SCSSEEEEESBC
T ss_pred HHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCHH---------HHHHHHHHcC--CCCCEEEeeCCC
Confidence 544 666789999999999999999999999999999999987520 1111121111 347999999998
Q ss_pred cC----cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCC
Q 002403 155 DD----HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPV 230 (927)
Q Consensus 155 ed----Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv 230 (927)
.+ |++++.... . .+. ..+..+|+||||+..|.|++|+++|+.+++++ |+++.
T Consensus 146 ~g~~~s~gv~~v~~~----------------~-~l~------~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~-~~~~~ 201 (324)
T 1z2n_X 146 QGTFNAHQMKIVLEQ----------------E-GID------DIHFPCLCQHYINHNNKIVKVFCIGNTLKWQT-RTSLP 201 (324)
T ss_dssp SSSSGGGEEEEECSG----------------G-GGT------TCCSSEEEEECCCCTTCEEEEEEETTEEEEEE-ECCCC
T ss_pred CCCccceeeEEEeCH----------------H-HHh------hcCCCEEEEEccCCCCcEEEEEEECCEEEEEE-ecCcc
Confidence 51 333333221 1 111 12567999999998899999999999999985 54541
Q ss_pred -C-----------------------------------CCceeecCCCCceeeeeeCC-HHHHHHHHHHHHHhCCceeEEE
Q 002403 231 -V-----------------------------------DGVVMRNPDGKEVRYPVLLT-PNEKQMAREVCIAFRQAVCGFD 273 (927)
Q Consensus 231 -~-----------------------------------dG~vrrN~~gke~r~~v~Lt-~eEk~iA~k~~~afgq~VcGfD 273 (927)
+ .+.|+.|.+. +...+..++ ++.+++|.++++++|..+||||
T Consensus 202 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD 280 (324)
T 1z2n_X 202 NVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGID 280 (324)
T ss_dssp CCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccCCCccceeeccccchhhhccccccccccccccccccchhhcccc-CCccccCCCHHHHHHHHHHHHHHhCCcEEeeE
Confidence 1 2456777765 344577888 7999999999999999999999
Q ss_pred EEee-C-CCcEEEecCCccccccchhhH
Q 002403 274 LLRC-E-GRSYVCDVNGWSFVKNSYKYY 299 (927)
Q Consensus 274 lLRs-~-~~syV~DVNGwSFVK~n~~YY 299 (927)
++.. . |.+||+|||..+-...-..|.
T Consensus 281 ~~~~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 281 FIKENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp EECGGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred EEEEcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 9987 4 569999999554444444554
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.84 E-value=2.5e-20 Score=191.20 Aligned_cols=237 Identities=20% Similarity=0.205 Sum_probs=162.2
Q ss_pred hhHHHHHHHhhcCCceEEEEeCCc-eee--cCCCcccCCcC-eeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhh
Q 002403 21 APMGQILDRLQAFGEFEVIHFGDK-VIL--EDPIEKWPICD-CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHD 96 (927)
Q Consensus 21 kPm~~IL~rL~~~~~f~viiF~d~-vIL--~e~ve~wP~~D-~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~D 96 (927)
...+.+...+.+.| ++++++.-. ... ......|+.+| ++++.+++ +....+.++++..+...+|+..+..+++|
T Consensus 11 ~~~~~~~~a~~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~d 88 (280)
T 1uc8_A 11 PDERMLFERAEALG-LPYKKVYVPALPMVLGERPKELEGVTVALERCVSQ-SRGLAAARYLTALGIPVVNRPEVIEACGD 88 (280)
T ss_dssp HHHHHHHHHHHHHT-CCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSH-HHHHHHHHHHHHTTCCEESCHHHHHHHHB
T ss_pred HHHHHHHHHHHHcC-CcEEEEehhhceeeccCCCcccCCCCEEEECCccc-hhhHHHHHHHHHCCCceeCCHHHHHHhCC
Confidence 44566777777655 666665431 111 11013478899 78887763 22345667777888777899999999999
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHh
Q 002403 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (927)
Q Consensus 97 R~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfr 176 (927)
|....++|+++|||+|++..+... ++....- ..++.|+|+||..|. .|.|+. +++
T Consensus 89 K~~~~~~l~~~gi~~p~~~~~~~~------------~~~~~~~-~~~~~p~vvKp~~g~-----------~~~gv~-~v~ 143 (280)
T 1uc8_A 89 KWATSVALAKAGLPQPKTALATDR------------EEALRLM-EAFGYPVVLKPVIGS-----------WGRLLA-XXX 143 (280)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-HHHCSSEEEECSBCC-----------BCSHHH-HHH
T ss_pred HHHHHHHHHHcCcCCCCeEeeCCH------------HHHHHHH-HHhCCCEEEEECCCC-----------Ccccce-ecc
Confidence 999999999999999999988651 1111110 124579999999997 577775 555
Q ss_pred hcCCCcccccccccccc--cCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCCHHH
Q 002403 177 KVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE 254 (927)
Q Consensus 177 ki~n~sS~~~~~~~~~r--~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eE 254 (927)
....-...+.. ..... .+..+|+||||+..|.+++|+++|++++++..|++ +.|+.|.+.++...|..|+++-
T Consensus 144 ~~~el~~~~~~-~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~----~~~~~~~~~g~~~~p~~l~~~~ 218 (280)
T 1uc8_A 144 XXXXXXXXXXX-KEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS----AHWITNTARGGQAENCPLTEEV 218 (280)
T ss_dssp HHHC-------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC------------------CEECCCCHHH
T ss_pred cccccchhhhh-HhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec----CCccccccCCccccCCCCCHHH
Confidence 44322222221 00012 26789999999988999999999999999888863 7899999988888899999999
Q ss_pred HHHHHHHHHHhCCceeEEEEEeeCCCcEEEecCCc
Q 002403 255 KQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGW 289 (927)
Q Consensus 255 k~iA~k~~~afgq~VcGfDlLRs~~~syV~DVNGw 289 (927)
+++|.++++++|..++|||++.+.+++||+|||..
T Consensus 219 ~~~~~~~~~~lg~g~~~vD~~~~~~g~~~iEiN~r 253 (280)
T 1uc8_A 219 ARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHT 253 (280)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHhCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 99999999999999999999999888999999953
No 8
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.75 E-value=4.6e-19 Score=211.31 Aligned_cols=183 Identities=19% Similarity=0.232 Sum_probs=140.1
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 002403 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (927)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (927)
...+...+..+++||..+.++|+++|||+|++.++... ++....-...++.|+|+||..|.
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~G~------- 531 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDR------------KEALNYFSQIQDKPIVVKPKSTN------- 531 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETT------------TTHHHHHHHSSSSCEEEEETTCC-------
T ss_pred eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCcEEEEeCCCC-------
Confidence 45556677888899999999999999999999988762 22221111224589999999998
Q ss_pred eccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCC---------
Q 002403 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVD--------- 232 (927)
Q Consensus 163 yp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~d--------- 232 (927)
+|.|+. +++.+.+....... +. ..+.+..+|+||||+ |.|++|+|||+++++|+.|.+|-+.
T Consensus 532 ----~G~GV~-iv~~~~s~eel~~a-~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~e 603 (750)
T 3ln6_A 532 ----FGLGIS-IFKTSANLASYEKA-IDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQ 603 (750)
T ss_dssp ----SSSSCE-EESSCCCHHHHHHH-HHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHH
T ss_pred ----CCCCEE-EEeCCCCHHHHHHH-HHHHHhhCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHH
Confidence 677774 55433332221110 00 112467899999998 8999999999999999999987431
Q ss_pred ---------------------------------------------Cc-----eeecCCCCceeeee--eCCHHHHHHHHH
Q 002403 233 ---------------------------------------------GV-----VMRNPDGKEVRYPV--LLTPNEKQMARE 260 (927)
Q Consensus 233 ---------------------------------------------G~-----vrrN~~gke~r~~v--~Lt~eEk~iA~k 260 (927)
|+ +++|.+.||....+ .++|+.+++|.+
T Consensus 604 LI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~ 683 (750)
T 3ln6_A 604 LVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAE 683 (750)
T ss_dssp HHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHH
T ss_pred HHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHH
Confidence 22 67999999999999 799999999999
Q ss_pred HHHHhCCceeEEEEEeeC---------CCcEEEecCCcccc
Q 002403 261 VCIAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 292 (927)
Q Consensus 261 ~~~afgq~VcGfDlLRs~---------~~syV~DVNGwSFV 292 (927)
||+++|+.||||||+... ++.+|||||+-+-.
T Consensus 684 aa~~igl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~ 724 (750)
T 3ln6_A 684 MAEAMGAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLM 724 (750)
T ss_dssp HHHHHTCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCC
T ss_pred HHHHhCCCeEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 999999999999999874 35689999987644
No 9
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.75 E-value=6.1e-19 Score=210.29 Aligned_cols=181 Identities=21% Similarity=0.253 Sum_probs=136.7
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEec
Q 002403 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (927)
Q Consensus 85 iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp 164 (927)
-++..+..+++||..+.++|+++|||+|++.++... ++.+..-...+++|+|+||..|.
T Consensus 478 ~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~g~--------- 536 (757)
T 3ln7_A 478 HDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL------------EKAVASYALFENRAVVIKPKSTN--------- 536 (757)
T ss_dssp SSBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCH------------HHHHHGGGGSSSSCEEEEESSCS---------
T ss_pred CCHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCCEEEEeCCCC---------
Confidence 355567788899999999999999999999988651 22211111234689999999998
Q ss_pred cCCCChHHHHHh-hcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCC-----------
Q 002403 165 SSAGGGMKELFR-KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV----------- 231 (927)
Q Consensus 165 ~~~GgG~~rLfr-ki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~----------- 231 (927)
.|.|+. ++. ++.+... +..-+. ..+.+..+|+||||+ |.|++|+|+|+++++|+.|.+|-|
T Consensus 537 --~G~GV~-iv~~~v~~~ee-l~~al~~a~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eL 610 (757)
T 3ln7_A 537 --YGLGIT-IFQQGVQNRED-FAKALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAEL 610 (757)
T ss_dssp --TTTTCE-ECSSCCCCHHH-HHHHHHHHHHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHH
T ss_pred --CCCCeE-EecCCCCCHHH-HHHHHHHHHhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHH
Confidence 677764 331 1122211 111000 123467899999995 899999999999999999998632
Q ss_pred -------------------------------------------CCc-----eeecCCCCceeeee--eCCHHHHHHHHHH
Q 002403 232 -------------------------------------------DGV-----VMRNPDGKEVRYPV--LLTPNEKQMAREV 261 (927)
Q Consensus 232 -------------------------------------------dG~-----vrrN~~gke~r~~v--~Lt~eEk~iA~k~ 261 (927)
.|+ +++|.+.||....| .++|+.+++|.+|
T Consensus 611 i~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~a 690 (757)
T 3ln7_A 611 VAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGI 690 (757)
T ss_dssp HHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHH
T ss_pred HHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHH
Confidence 233 58899999999999 9999999999999
Q ss_pred HHHhCCceeEEEEEeeC---------CCcEEEecCCcccc
Q 002403 262 CIAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 292 (927)
Q Consensus 262 ~~afgq~VcGfDlLRs~---------~~syV~DVNGwSFV 292 (927)
|+++|+.||||||+... ++..|||||+-+-.
T Consensus 691 a~~lGl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~ 730 (757)
T 3ln7_A 691 TKAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMM 730 (757)
T ss_dssp HHHHTCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCH
T ss_pred HHHhCCCEEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 99999999999999872 36789999976643
No 10
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.72 E-value=2.6e-18 Score=178.80 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=147.9
Q ss_pred ccCCcCeeeccccCCCc-----hHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccc
Q 002403 53 KWPICDCLIAFYSSGYP-----LEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 127 (927)
Q Consensus 53 ~wP~~D~lIsf~s~gfp-----l~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~ 127 (927)
.|..+|+++.+...++. ....++.++..+..++|+..+..++.||+..+++|+ |+|++..++..
T Consensus 76 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~~~------- 144 (316)
T 1gsa_A 76 PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNK------- 144 (316)
T ss_dssp EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTT----TSCCEEEESCH-------
T ss_pred ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEecCHHHHHhhhhHHHHHhhhh----cCCCeEEeCCH-------
Confidence 45679999987655442 235667777788778899999999999999999887 99999988651
Q ss_pred ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc--cCcceEEeeccC
Q 002403 128 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFMP 205 (927)
Q Consensus 128 ~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r--~~gsyIyeEFi~ 205 (927)
++....- ..++ |+|+||..|. .|.|+. +++. +. ..+..-+.... ....+|+||||+
T Consensus 145 -----~~~~~~~-~~~~-p~vvKP~~g~-----------~g~Gv~-~v~~--~~-~~l~~~~~~~~~~~~~~~lvqe~i~ 202 (316)
T 1gsa_A 145 -----AQLKAFW-EKHS-DIILKPLDGM-----------GGASIF-RVKE--GD-PNLGVIAETLTEHGTRYCMAQNYLP 202 (316)
T ss_dssp -----HHHHHHH-HHHS-SEEEECSSCC-----------TTTTCE-EECT--TC-TTHHHHHHHHTTTTTSCEEEEECCG
T ss_pred -----HHHHHHH-HHcC-CEEEEECCCC-----------CcccEE-EecC--Ch-HHHHHHHHHHHhcCCceEEEecccC
Confidence 1211111 1234 9999999986 444542 1110 11 11110000111 246799999999
Q ss_pred C-CCceeEEEEECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHH---hCCceeEEEEEeeCCC
Q 002403 206 T-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIA---FRQAVCGFDLLRCEGR 280 (927)
Q Consensus 206 ~-~G~DIKvytVG~~~vh-Ae~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~a---fgq~VcGfDlLRs~~~ 280 (927)
. .+.|++|+++|+++++ +..|+++ .|.|+.|.|.|+...|..++++.+++|.+++++ +|..++|||++ |
T Consensus 203 ~~~~~~~~v~~~~g~~~~~~~~r~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~a~~~~~~l~~~g~~~~~vD~~----g 276 (316)
T 1gsa_A 203 AIKDGDKRVLVVDGEPVPYCLARIPQ--GGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDII----G 276 (316)
T ss_dssp GGGGCEEEEEEETTEECSEEEEEECC--SSCSCCCGGGTCEEEEEECCHHHHHHHHHHHHHHHHTTCCEEEEEEE----T
T ss_pred CCCCCCEEEEEECCEEeeeEEEEeCC--CCCceeEEccCCccccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEec----C
Confidence 7 5899999999999998 9999875 789999999888889999999999999999987 59999999999 4
Q ss_pred cEEEecCCc
Q 002403 281 SYVCDVNGW 289 (927)
Q Consensus 281 syV~DVNGw 289 (927)
+||+|||..
T Consensus 277 ~~~iEvN~r 285 (316)
T 1gsa_A 277 DRLTEINVT 285 (316)
T ss_dssp TEEEEEECS
T ss_pred CEEEEEcCC
Confidence 699999963
No 11
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.72 E-value=8.5e-18 Score=176.63 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=168.6
Q ss_pred HHHHHHHhhcCCceEEEEeCCceeecCCCcccCCcCeeeccccCCCchH-HHHHHHHhcCCccc-CCchhhhHhhhHHHH
Q 002403 23 MGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKV 100 (927)
Q Consensus 23 m~~IL~rL~~~~~f~viiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~ 100 (927)
-+.|++-|.+.| ++++.++-.-. ...++....+|++++....++..+ .+...++..+..++ |+..+..+++||..+
T Consensus 24 ~~~v~~al~~~g-~~v~~i~~~~~-~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~ 101 (307)
T 3r5x_A 24 GNEMIANLDKNK-YEIVPITLNEK-MDLIEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNIS 101 (307)
T ss_dssp HHHHHHHSCTTT-EEEEEEECSSG-GGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCC-CEEEEEcccCc-hhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHH
Confidence 456777787766 88887653210 011344568999998765443221 23345667775555 679999999999999
Q ss_pred HHHHHhCCCCCCCEEEEeccCCCccccccccccc-eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC
Q 002403 101 YEQLEKYGIPVPRYALVNREVPYQELDYFIEEED-FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG 179 (927)
Q Consensus 101 lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d-~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~ 179 (927)
.++|+++|||+|++.++.... +... .+ ..++.|+|+||..|. .|.|+. ++.
T Consensus 102 ~~~l~~~Gip~p~~~~~~~~~---------~~~~~~~----~~~~~P~vvKP~~~~-----------~s~Gv~----~v~ 153 (307)
T 3r5x_A 102 KKILRYEGIETPDWIELTKME---------DLNFDEL----DKLGFPLVVKPNSGG-----------SSVGVK----IVY 153 (307)
T ss_dssp HHHHHHTTCCCCCEEEEESSS---------CCCHHHH----HHHCSSEEEEECC---------------CCCE----EEC
T ss_pred HHHHHHCCCCCCCEEEEeChh---------hhhHHHH----HhcCCCEEEEeCCCC-----------CCCCEE----EeC
Confidence 999999999999999998621 1111 11 124579999999985 333332 111
Q ss_pred CCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--ceeecC-CCCceeeeeeCCHHH-
Q 002403 180 NRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNP-DGKEVRYPVLLTPNE- 254 (927)
Q Consensus 180 n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG--~vrrN~-~gke~r~~v~Lt~eE- 254 (927)
+.. ++..-+. ..+.+..+|+||||+ |.+++|.++|+++.++..+..+ .+ .++.+. ++|...+|+.|++++
T Consensus 154 ~~~-el~~~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~p~~l~~~~~ 228 (307)
T 3r5x_A 154 DKD-ELISMLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHA--AEFFDYNAKYDDASTIEEVIELPAELK 228 (307)
T ss_dssp SHH-HHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEE--EEEETTEEEEEEEEEEEEECCCCHHHH
T ss_pred CHH-HHHHHHHHHHhcCCCEEEECCcC--CEEEEEEEECCEEeeEEEEEcC--CcccChhhcCCCCCCeEecCCCCHHHH
Confidence 111 1110000 112367899999998 8999999999988666455442 44 566666 677777799999976
Q ss_pred ---HHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEecCCccccc-----------cchhhHHHHHHHHHHHH
Q 002403 255 ---KQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWSFVK-----------NSYKYYDDAACVLRKMF 310 (927)
Q Consensus 255 ---k~iA~k~~~afgq~-VcGfDlLRs~~~syV~DVNGwSFVK-----------~n~~YYd~cA~iL~~~~ 310 (927)
+++|.++++++|.. +++||++.++|++||+|||-..-.. ....|-+-+++||..-+
T Consensus 229 ~~i~~~a~~~~~~lg~~G~~~vD~~~~~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~ 299 (307)
T 3r5x_A 229 ERVNKASLACYKALKCSVYARVDMMVKDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 299 (307)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEEECCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999998 9999999998889999999542211 23355555666665543
No 12
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.70 E-value=1.3e-16 Score=166.24 Aligned_cols=235 Identities=14% Similarity=0.151 Sum_probs=151.1
Q ss_pred HHHHHHhhcCCceEEEEeCCceeecCCCccc--CCcCeeeccccCCCchH-HHHHHHHhcCC-cccCCchhhhHhhhHHH
Q 002403 24 GQILDRLQAFGEFEVIHFGDKVILEDPIEKW--PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRK 99 (927)
Q Consensus 24 ~~IL~rL~~~~~f~viiF~d~vIL~e~ve~w--P~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~ 99 (927)
+.+...|.+.| ++++++.-. +.+.... ..+|+++.....++..+ ...+.++..+. ++-|+..+..+++||..
T Consensus 24 ~~l~~al~~~G-~~v~~~~~~---~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~ 99 (306)
T 1iow_A 24 AAVLAGLREGG-IDAYPVDPK---EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 (306)
T ss_dssp HHHHHHHHHTT-CEEEEECTT---TSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHH
T ss_pred HHHHHHHHHCC-CeEEEEecC---chHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHH
Confidence 56777777755 788887643 2221111 36798887763322221 12234555564 45599999999999999
Q ss_pred HHHHHHhCCCCCCCEEEEeccCCCccccccccc-cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhc
Q 002403 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEE-EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (927)
Q Consensus 100 ~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~-~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki 178 (927)
..++|+++|||+|++..+... + +.+. +..+.---..++.|+|+||..|. .|.|+. + +
T Consensus 100 ~~~~l~~~gi~~p~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~p~vvKP~~g~-----------~~~gv~-~---v 157 (306)
T 1iow_A 100 SKLLWQGAGLPVAPWVALTRA--E-----FEKGLSDKQLAEISALGLPVIVKPSREG-----------SSVGMS-K---V 157 (306)
T ss_dssp HHHHHHHTTCCBCCEEEEEHH--H-----HHHCCCTHHHHHHHTTCSSEEEEETTCC-----------TTTTCE-E---E
T ss_pred HHHHHHHCCCCCCCeEEEchh--h-----hhccchhhhhhHHhccCCCEEEEeCCCC-----------CCCCEE-E---e
Confidence 999999999999999988752 0 0000 00000000124579999999986 344442 1 2
Q ss_pred CCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--ceeecCCCCcee--eeeeCCH-
Q 002403 179 GNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP- 252 (927)
Q Consensus 179 ~n~sS~~~~~~~~-~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG--~vrrN~~gke~r--~~v~Lt~- 252 (927)
.+.. ++..-+.. .+.+..+|+||||+ |.+++|.++|+++.++..+... .+ .++.|.+.|+.. .|..|++
T Consensus 158 ~~~~-el~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~l~~~ 232 (306)
T 1iow_A 158 VAEN-ALQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS--GTFYDYEAKFLSDETQYFCPAGLEAS 232 (306)
T ss_dssp SSGG-GHHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS--SSSSCHHHHHTCSCCEEESSCCCCHH
T ss_pred CCHH-HHHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC--CCeEchhheecCCCeeEEcCCCCCHH
Confidence 2111 11100001 12367899999998 8999999999987776655432 22 344555545443 3556775
Q ss_pred ---HHHHHHHHHHHHhCCc-eeEEEEEeeC-CCcEEEecCCc
Q 002403 253 ---NEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGW 289 (927)
Q Consensus 253 ---eEk~iA~k~~~afgq~-VcGfDlLRs~-~~syV~DVNGw 289 (927)
+-+++|.++++++|.. ++|||++.+. |.+||+|||..
T Consensus 233 ~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~r 274 (306)
T 1iow_A 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 274 (306)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCC
Confidence 4578999999999996 9999999985 55999999954
No 13
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.61 E-value=6.5e-15 Score=156.67 Aligned_cols=237 Identities=15% Similarity=0.116 Sum_probs=150.1
Q ss_pred hHHHHHHHhhcCCceEEEEeCCceeecCCCc--ccCCcCeeeccccCCCch-HHHHHHHHhcCCccc-CCchhhhHhhhH
Q 002403 22 PMGQILDRLQAFGEFEVIHFGDKVILEDPIE--KWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDR 97 (927)
Q Consensus 22 Pm~~IL~rL~~~~~f~viiF~d~vIL~e~ve--~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR 97 (927)
--++|++-|.+.| ++++.++.. +..+. .+..+|++++....++-. ..+...++..+.+.+ |+..+..+++||
T Consensus 33 s~~~v~~al~~~g-~~v~~i~~~---~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK 108 (317)
T 4eg0_A 33 SGRLVLQGLRDAG-IDAHPFDPA---ERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDK 108 (317)
T ss_dssp HHHHHHHHHHHTT-CEEEEECTT---TSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCH
T ss_pred HHHHHHHHHHHCC-CEEEEEeCC---CchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCH
Confidence 4688888888866 888887732 11111 234688888755443332 234566667776555 788999999999
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhh
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrk 177 (927)
..+.++|+++|||+|++.++.... +..+.+.---..++.|+|+||..|. .|.|+. +
T Consensus 109 ~~~k~~l~~~Gip~p~~~~~~~~~---------~~~~~~~~~~~~~g~PvvvKP~~~~-----------~s~Gv~----~ 164 (317)
T 4eg0_A 109 FRTKLVWQQTGVPTPPFETVMRGD---------DYAARATDIVAKLGLPLFVKPASEG-----------SSVAVL----K 164 (317)
T ss_dssp HHHHHHHHHTTCCCCCEEEEETTS---------CHHHHHHHHHHHHCSCEEEEECC----------------CCE----E
T ss_pred HHHHHHHHHCCcCCCCEEEEECch---------hHHHHHHHHHHhcCCCEEEEeCCCC-----------CCCCEE----E
Confidence 999999999999999999998621 1111110000235689999999985 333332 2
Q ss_pred cCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeecCCCCCC--ceeecCCCCcee--eeeeCCH
Q 002403 178 VGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP 252 (927)
Q Consensus 178 i~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkSPv~dG--~vrrN~~gke~r--~~v~Lt~ 252 (927)
+.+... +..-+. ..+.+..+|+||||+. |.++.|.++|+.+.++..+.+. .+ .++.+.+.++.. .|..|++
T Consensus 165 v~~~~e-l~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~--~~~~~~~~k~~~g~~~~~~P~~l~~ 240 (317)
T 4eg0_A 165 VKTADA-LPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVPA--GEFYDYHAKYVANDTQYLIPCGLPA 240 (317)
T ss_dssp ECSGGG-HHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC-----------------CEEESSCSSCH
T ss_pred ECCHHH-HHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEeeC--CceechhhcccCCCeeEEcCCCCCH
Confidence 222211 110000 1234678999999987 8999999999987777666542 22 223444444444 3556775
Q ss_pred ----HHHHHHHHHHHHhCCc-eeEEEEEee-CCCcEEEecCCcc
Q 002403 253 ----NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVNGWS 290 (927)
Q Consensus 253 ----eEk~iA~k~~~afgq~-VcGfDlLRs-~~~syV~DVNGwS 290 (927)
+-+++|.++++++|.. +|+||++.+ +|.+||+|||-.+
T Consensus 241 ~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~p 284 (317)
T 4eg0_A 241 EQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAP 284 (317)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCC
Confidence 4578899999999996 999999988 4569999999554
No 14
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.53 E-value=2.4e-14 Score=153.45 Aligned_cols=199 Identities=15% Similarity=0.228 Sum_probs=134.9
Q ss_pred CCcCeeeccccCCCchH-HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAFYSSGYPLE-KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++...-.+-.+ .+...++..+.. +-++..+..+++||..+.++|+++|||+|++..+.+..
T Consensus 75 ~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------- 143 (322)
T 2fb9_A 75 ERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGE----------- 143 (322)
T ss_dssp TTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTS-----------
T ss_pred cCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECch-----------
Confidence 46899998864332221 334556677754 44779999999999999999999999999999987621
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD 210 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G-~D 210 (927)
++.+ .++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ | ++
T Consensus 144 ~~~~-----~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEe~I~--G~~E 200 (322)
T 2fb9_A 144 PPVV-----PFDPPFFVKPANTG-----------SSVGIS----RVERFQ-DLEAALALAFRYDEKAVVEKALS--PVRE 200 (322)
T ss_dssp CCCC-----CSCSCEEEEETTCC-----------TTTTCE----EESSHH-HHHHHHHHHTTTCSEEEEEECCS--SCEE
T ss_pred hhhh-----ccCCCEEEEeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCeEEEEeCCC--CCee
Confidence 1121 35689999999986 344442 122111 1111000 122467899999996 7 89
Q ss_pred eEEEEECCc---eeEEEeecCCCCCCc--eeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeC
Q 002403 211 VKVYTVGPE---YAHAEARKSPVVDGV--VMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE 278 (927)
Q Consensus 211 IKvytVG~~---~vhAe~RkSPv~dG~--vrrN~~gke~--r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~ 278 (927)
+.|.++|.. +.++..+... .+. +..+.+.|.. ..|..|++ +-+++|.++++++|. .+|+||++.++
T Consensus 201 ~~v~vl~~~~~~~~~~~ei~~~--~~~~~~~~k~~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 278 (322)
T 2fb9_A 201 LEVGVLGNVFGEASPVGEVRYE--APFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE 278 (322)
T ss_dssp EEEEEESSSSCEEEEEEEEEEE--CCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEET
T ss_pred EEEEEEeCCCceEeeeEEEeeC--CCccCHHHcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEEC
Confidence 999999985 5555444431 121 2233333433 34666776 678899999999999 89999999986
Q ss_pred CCcEEEecCCc
Q 002403 279 GRSYVCDVNGW 289 (927)
Q Consensus 279 ~~syV~DVNGw 289 (927)
|++||+|||-.
T Consensus 279 g~~~vlEiN~r 289 (322)
T 2fb9_A 279 GELYLNELNTI 289 (322)
T ss_dssp TEEEEEEEESS
T ss_pred CcEEEEEEECC
Confidence 66999999953
No 15
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.53 E-value=2e-13 Score=147.56 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=132.3
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++...-.+..+ .+..+++..+. |+-++..+..+++||..+.++|+++|||+|++..+.+.. .
T Consensus 90 ~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~-----------~ 158 (346)
T 3se7_A 90 RLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADE-----------K 158 (346)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTS-----------C
T ss_pred CCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcH-----------H
Confidence 4788888774444332 45566777775 556678999999999999999999999999999998621 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIK 212 (927)
.. -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |.++.
T Consensus 159 ~~----~~~lg~PvvvKP~~~~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEe~I~--G~E~~ 216 (346)
T 3se7_A 159 IP----TDQLTYPVFVKPARSG-----------SSFGVS----KVAREE-DLQGAVEAAREYDSKVLIEEAVI--GTEIG 216 (346)
T ss_dssp CC----TTTCCSSEEEEESSCC-----------TTTTCE----EECSHH-HHHHHHHHHTTTCSEEEEEECCC--SEEEE
T ss_pred HH----HHhcCCCEEEEeCCCC-----------CCcCEE----EECCHH-HHHHHHHHHHhCCCcEEEEeCcC--CEEEE
Confidence 11 1234689999999985 333432 122111 1111000 123467899999998 89999
Q ss_pred EEEECCc---eeEEEeecCCCCCCce-------eecCC--CCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEE
Q 002403 213 VYTVGPE---YAHAEARKSPVVDGVV-------MRNPD--GKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (927)
Q Consensus 213 vytVG~~---~vhAe~RkSPv~dG~v-------rrN~~--gke~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlL 275 (927)
|.++|.. .+....+..| .+.| ....+ +.....|..|++ +-+++|.++++++|. .+++||++
T Consensus 217 v~vl~~~~~~~~~~~~e~~~--~~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 294 (346)
T 3se7_A 217 CAVMGNGPELITGEVDQITL--SHGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLF 294 (346)
T ss_dssp EEEEEETTEEEECCCEEECC--C--------------CGGGSCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred EEEEecCCCeEEEeeEEEec--CCCCcCcccchhccccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 9999874 3333344443 2222 22222 123344677887 567899999999999 69999999
Q ss_pred eeCCC-cEEEecCCc
Q 002403 276 RCEGR-SYVCDVNGW 289 (927)
Q Consensus 276 Rs~~~-syV~DVNGw 289 (927)
.+.+| +||+|||..
T Consensus 295 ~~~~g~~~vlEiN~r 309 (346)
T 3se7_A 295 LTEDGKVVLNEVNTF 309 (346)
T ss_dssp ECTTSCEEEEEEESS
T ss_pred EeCCCCEEEEEEeCC
Confidence 98654 999999944
No 16
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.51 E-value=5.1e-14 Score=154.70 Aligned_cols=223 Identities=13% Similarity=0.144 Sum_probs=145.0
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++...-.+..+ .+...++..+.+ +-|+..+..+++||..+.++|+++|||+|++..+.+.. ..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKN----------RA 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEECTTT----------GG
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEEEeCCc----------hH
Confidence 5899998765444442 345566777754 45899999999999999999999999999999987621 11
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce-
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD- 210 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G-~D- 210 (927)
+... -..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ | ++
T Consensus 177 ~~~~--~~~lg~PvvVKP~~g~-----------ss~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlVEe~I~--G~~E~ 236 (367)
T 2pvp_A 177 NALD--LMNFNFPFIVKPSNAG-----------SSLGVN----VVKEEKE-LIYALDSAFEYSKEVLIEPFIQ--GVKEY 236 (367)
T ss_dssp GHHH--HCCSCSCEEEEESSCC-----------TTTTCE----EESSTTS-HHHHHHHHTTTCSCEEEEECCT--TCEEE
T ss_pred HHHH--HhccCCCEEEEECCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCcEEEEeCCC--CCcee
Confidence 2222 1235689999999986 344442 2222221 111010 122367899999997 7 89
Q ss_pred --eEEEEECCceeEEEeecCCCCCCc---eeecCCCCc--eeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC
Q 002403 211 --VKVYTVGPEYAHAEARKSPVVDGV---VMRNPDGKE--VRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (927)
Q Consensus 211 --IKvytVG~~~vhAe~RkSPv~dG~---vrrN~~gke--~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~ 278 (927)
+.|.+ +++.+....+..| ++. ++.+.+.|+ ...|..|++ +-+++|.++++++|.. +|+||++.++
T Consensus 237 svi~v~v-~g~~~~~~~ei~~--~~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 313 (367)
T 2pvp_A 237 NLAGCKI-KKDFCFSYIEEPN--KQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE 313 (367)
T ss_dssp EEEEEEE-TTEEEEEEEEETT--TTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEET
T ss_pred eEEEEEE-CCEEEEEEEEEec--CCceEcccccccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEEC
Confidence 88888 7774444324444 332 234444443 345777885 4678999999999975 9999999997
Q ss_pred CCcEEEecCCccccccchhhHHHHHHHHHHHHHH
Q 002403 279 GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 312 (927)
Q Consensus 279 ~~syV~DVNGwSFVK~n~~YYd~cA~iL~~~~l~ 312 (927)
|++||+|||--.=.- ....|-+-+.++..++..
T Consensus 314 g~~~vlEiN~rpg~t-~~s~~p~~~~l~~~li~~ 346 (367)
T 2pvp_A 314 NEVYLNEINPIPGSL-ANYLFDDFKTTLENLAQS 346 (367)
T ss_dssp TEEEEEEEESSCGGG-GGGGSSSHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCC-cccccCCHHHHHHHHHhC
Confidence 789999999532111 111222445555555544
No 17
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.50 E-value=1.1e-13 Score=149.07 Aligned_cols=201 Identities=14% Similarity=0.223 Sum_probs=131.7
Q ss_pred CCcCeeeccccCCCchH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++...-.+-.+ .....++..+. |+-|+..+..+++||..+.++|+++|||+|++..+.+.
T Consensus 89 ~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------ 156 (343)
T 1e4e_A 89 NHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKD------------ 156 (343)
T ss_dssp EECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTT------------
T ss_pred ccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEech------------
Confidence 35899998764332111 23344556664 45588999999999999999999999999999998762
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DI 211 (927)
++ +. . ..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |.++
T Consensus 157 ~~-~~-~-~~~~~PvvvKP~~~~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~~lvEe~I~--G~E~ 215 (343)
T 1e4e_A 157 DR-PV-A-ATFTYPVFVKPARSG-----------SSFGVK----KVNSADE-LDYAIESARQYDSKILIEQAVS--GCEV 215 (343)
T ss_dssp CC-CC-G-GGSCSCEEEEESSCC-----------TTTTCE----EECSGGG-HHHHHHHHTTTCSSEEEEECCC--SEEE
T ss_pred hh-hh-h-hccCCCEEEEeCCCC-----------CCCCEE----EeCCHHH-HHHHHHHHHhcCCcEEEEeCcC--CeEE
Confidence 11 11 0 345689999999985 333432 1222111 111000 122467899999997 8999
Q ss_pred EEEEECCc----eeEEEeecCCCCCCceeecCC----CCcee--eeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEe
Q 002403 212 KVYTVGPE----YAHAEARKSPVVDGVVMRNPD----GKEVR--YPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLR 276 (927)
Q Consensus 212 KvytVG~~----~vhAe~RkSPv~dG~vrrN~~----gke~r--~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLR 276 (927)
.|.++|.. +.....+...----.++.+.+ .|+.. .|..|++ +-+++|.++++++|.. +|+||++.
T Consensus 216 ~v~vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 295 (343)
T 1e4e_A 216 GCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFL 295 (343)
T ss_dssp EEEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 99999865 233333322100012344554 44443 4555775 6788999999999994 99999999
Q ss_pred eC-CCcEEEecCC
Q 002403 277 CE-GRSYVCDVNG 288 (927)
Q Consensus 277 s~-~~syV~DVNG 288 (927)
+. |.+||+|||-
T Consensus 296 ~~~g~~~viEiN~ 308 (343)
T 1e4e_A 296 QDNGRIVLNEVNT 308 (343)
T ss_dssp CTTCCEEEEEEES
T ss_pred eCCCCEEEEEeeC
Confidence 74 5599999994
No 18
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.50 E-value=7.3e-14 Score=153.18 Aligned_cols=207 Identities=19% Similarity=0.207 Sum_probs=137.1
Q ss_pred cCCcCeeeccccCCCchH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccc
Q 002403 54 WPICDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (927)
Q Consensus 54 wP~~D~lIsf~s~gfpl~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e 131 (927)
...+|++++.+.-.+..+ .+...++..+.+.+ |+..+..+++||..+.++|+++|||+|++..+.+.. +
T Consensus 91 ~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~---------~ 161 (377)
T 1ehi_A 91 AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPES---------A 161 (377)
T ss_dssp TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEEECTTG---------G
T ss_pred ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEEEeccc---------c
Confidence 346899998874333332 34455677776555 999999999999999999999999999999987621 0
Q ss_pred cccee-eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCC-
Q 002403 132 EEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG- 208 (927)
Q Consensus 132 ~~d~i-~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G- 208 (927)
.+..+ .+ -..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ....+..+|+||||+ |
T Consensus 162 ~~~~~~~~-~~~~g~PvvVKP~~~~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEe~I~--G~ 222 (377)
T 1ehi_A 162 NNWSWDKI-VAELGNIVFVKAANQG-----------SSVGIS----RVTNAE-EYTEALSDSFQYDYKVLIEEAVN--GA 222 (377)
T ss_dssp GGCCHHHH-HHHHCSCEEEEESSCC-----------TTTTEE----EECSHH-HHHHHHHHHTTTCSCEEEEECCC--CS
T ss_pred chHHHHHH-HHhcCCCEEEEeCCCC-----------CCcCEE----EeCCHH-HHHHHHHHHHhcCCcEEEEcCCC--CC
Confidence 01111 11 1135689999999985 333432 122111 1110000 112356899999996 7
Q ss_pred ceeEEEEECCc---eeEEEeecCCC---CCCce--eecCCCC-ce--eeeeeCCHH----HHHHHHHHHHHhCCc-eeEE
Q 002403 209 TDVKVYTVGPE---YAHAEARKSPV---VDGVV--MRNPDGK-EV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGF 272 (927)
Q Consensus 209 ~DIKvytVG~~---~vhAe~RkSPv---~dG~v--rrN~~gk-e~--r~~v~Lt~e----Ek~iA~k~~~afgq~-VcGf 272 (927)
+++.|.++|+. +.+...+.... ..|.+ +.+.+.+ +. ..|..|+++ -+++|.++++++|.. +|+|
T Consensus 223 ~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~v 302 (377)
T 1ehi_A 223 RELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARM 302 (377)
T ss_dssp CEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 89999999874 66665554410 12322 2333333 33 346678865 467899999999997 9999
Q ss_pred EEEeeC-CCcEEEecCC
Q 002403 273 DLLRCE-GRSYVCDVNG 288 (927)
Q Consensus 273 DlLRs~-~~syV~DVNG 288 (927)
|++.+. |.+||+|||-
T Consensus 303 D~~~~~~g~~~vlEiN~ 319 (377)
T 1ehi_A 303 DFLLDENNVPYLGEPNT 319 (377)
T ss_dssp EEEECTTCCEEEEEEES
T ss_pred EEEEeCCCCEEEEEEeC
Confidence 999984 5699999993
No 19
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.48 E-value=1.1e-13 Score=150.47 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=129.9
Q ss_pred CCcCeeeccccCCCchH-HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAFYSSGYPLE-KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++.+...+..+ .....++..+.+ +-++..+..+++||..+.++|+++|||+|++..+.+... ..+.
T Consensus 86 ~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~------~~~~ 159 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEY------EKYE 159 (364)
T ss_dssp SBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHH------HHHH
T ss_pred cCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhh------cccc
Confidence 45899998763322221 234455666654 456799999999999999999999999999999876200 0000
Q ss_pred -cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCce
Q 002403 133 -EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTD 210 (927)
Q Consensus 133 -~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~D 210 (927)
++...+. ..++.|+|+||..|. .|.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |.+
T Consensus 160 ~~~~~~~~-~~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~-el~~a~~~~~~~~~~~lvEe~I~--G~E 220 (364)
T 2i87_A 160 HNILKLVN-DKLNYPVFVKPANLG-----------SSVGIS----KCNNEA-ELKEGIKEAFQFDRKLVIEQGVN--ARE 220 (364)
T ss_dssp HHHHHHHH-HHCCSSEEEEESSCS-----------SCTTCE----EESSHH-HHHHHHHHHHTTCSEEEEEECCC--CEE
T ss_pred hhHHHHHH-HhcCCCEEEEeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCeEEEEeCcc--CeE
Confidence 0111110 124579999999986 344442 122111 1111000 112467899999998 899
Q ss_pred eEEEEECCc---eeEEEeecCCCCCC--ceeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeC
Q 002403 211 VKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE 278 (927)
Q Consensus 211 IKvytVG~~---~vhAe~RkSPv~dG--~vrrN~~gke~--r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~ 278 (927)
+.|.++|+. +++...+... .+ .+..+.+.|+. ..|..|++ +-+++|.++++++|. .+++||++.+.
T Consensus 221 ~~v~vl~~~~~~~~~~~e~~~~--~~~~~~~~k~~~g~~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 298 (364)
T 2i87_A 221 IEVAVLGNDYPEATWPGEVVKD--VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE 298 (364)
T ss_dssp EEEEEEESSSCEECCCEEECCS--CCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEcCCCcEEeeeEEEecC--CCcCCHHHcccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 999999875 4444444331 22 23444444433 34666776 668899999999999 69999999974
Q ss_pred -CCcEEEecCCc
Q 002403 279 -GRSYVCDVNGW 289 (927)
Q Consensus 279 -~~syV~DVNGw 289 (927)
|.+||+|||..
T Consensus 299 ~g~~~viEiN~r 310 (364)
T 2i87_A 299 DNQIYINETNAM 310 (364)
T ss_dssp TCCEEEEEEESS
T ss_pred CCCEEEEEEeCC
Confidence 55999999953
No 20
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.44 E-value=2.9e-13 Score=144.73 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=125.3
Q ss_pred cCCcCeeecc-ccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 54 WPICDCLIAF-YSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 54 wP~~D~lIsf-~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
.+.||+++.. ++....+...++.++..++++.|+..+..+++||....++|++ |||+|++.+.
T Consensus 67 ~~~~D~~~~i~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~~--------------- 130 (305)
T 3df7_A 67 LEKSDAFLIIAPEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSLR--------------- 130 (305)
T ss_dssp HTTCSEEEEECCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEESS---------------
T ss_pred HHhcCEEEEEccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEecc---------------
Confidence 4678874433 2233445677787777788999999999999999999999999 9999999841
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
.++.|+|+||..|. .|.|+. ++.+ .+..+|+||||+ |.++.
T Consensus 131 ---------~~~~P~vvKP~~g~-----------gs~Gv~----~v~~-------------~~~~~lvEe~I~--G~e~s 171 (305)
T 3df7_A 131 ---------PLDCKFIIKPRTAC-----------AGEGIG----FSDE-------------VPDGHIAQEFIE--GINLS 171 (305)
T ss_dssp ---------CCSSSEEEEESSCC---------------CB----CCSS-------------CCTTEEEEECCC--SEEEE
T ss_pred ---------cCCCCEEEEeCCCC-----------CCCCEE----EEec-------------CCCCEEEEeccC--CcEEE
Confidence 12479999999986 344442 2322 367899999999 89999
Q ss_pred EEEECCceeEEEeecCCCCCCceeecCCCCceeeeeeCC----HHHHHHHHHHHHHh-C-CceeEEEEEeeCCCcEEEec
Q 002403 213 VYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAF-R-QAVCGFDLLRCEGRSYVCDV 286 (927)
Q Consensus 213 vytVG~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt----~eEk~iA~k~~~af-g-q~VcGfDlLRs~~~syV~DV 286 (927)
|.++++..+++..+... +..+..-.+...|..|+ ++-+++|.++++++ | ..++|+|++.+ |++||+||
T Consensus 172 v~v~~g~~~~~~~~~~~-----~~~~~~~~g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~-~~~~viEi 245 (305)
T 3df7_A 172 VSLAVGEDVKCLSVNEQ-----IINNFRYAGAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS-DQPYVIEI 245 (305)
T ss_dssp EEEEESSSEEEEEEEEE-----EEETTEEEEEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES-SSEEEEEE
T ss_pred EEEEeCCeEEEEEEeeE-----eccCceeccccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC-CCEEEEEE
Confidence 99997555555443211 11111111223466677 57788999999999 8 46999999996 88999999
Q ss_pred CC
Q 002403 287 NG 288 (927)
Q Consensus 287 NG 288 (927)
|-
T Consensus 246 Np 247 (305)
T 3df7_A 246 NA 247 (305)
T ss_dssp ES
T ss_pred cC
Confidence 93
No 21
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.41 E-value=3.6e-12 Score=139.14 Aligned_cols=229 Identities=14% Similarity=0.220 Sum_probs=143.0
Q ss_pred CCcCeeecc-ccCCCchHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAF-YSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf-~s~gfpl~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++- |+..---..+...+++.+ ||+-++..+..+++||..+.++|+++|||+|++..+.+... ..
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~--------~~ 168 (364)
T 3i12_A 97 PTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNR--------HA 168 (364)
T ss_dssp CCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEETTTG--------GG
T ss_pred CCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEcccc--------ch
Confidence 357888877 443221124556777877 45566789999999999999999999999999999986210 00
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DI 211 (927)
.+...+ -..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |.++
T Consensus 169 ~~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~e-l~~a~~~a~~~~~~vlVEe~I~--G~E~ 229 (364)
T 3i12_A 169 FSFAEV-ESRLGLPLFVKPANQG-----------SSVGVS----KVANEAQ-YQQAVALAFEFDHKVVVEQGIK--GREI 229 (364)
T ss_dssp CCHHHH-HHHHCSSEEEEETTCC-----------TTTTCE----EESSHHH-HHHHHHHHHHHCSEEEEEECCC--SEEE
T ss_pred hhHHHH-HHhcCCCEEEEECCCC-----------CCcCeE----EeCCHHH-HHHHHHHHHhcCCcEEEEcCcC--CeEE
Confidence 111111 1235689999999985 344442 1222111 111000 123467899999997 7999
Q ss_pred EEEEECCce---eEEEeecCCCCCCceeec--C-CC--CceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEee-
Q 002403 212 KVYTVGPEY---AHAEARKSPVVDGVVMRN--P-DG--KEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC- 277 (927)
Q Consensus 212 KvytVG~~~---vhAe~RkSPv~dG~vrrN--~-~g--ke~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs- 277 (927)
.|.++|+.. ....... | .++.+... - .+ .....|..|++ +-+++|.++++++|. .++++|++.+
T Consensus 230 ~v~vl~~~~~~~~~~~ei~-~-~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIV-L-NSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEE-C-CTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEeCCCceEeeeEEEe-c-CCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 999998763 2222222 2 13322221 1 12 23344666776 456789999999999 5999999988
Q ss_pred CCCcEEEecCCc------ccc-----ccchhhHHHHHHHHHHHHHH
Q 002403 278 EGRSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFLE 312 (927)
Q Consensus 278 ~~~syV~DVNGw------SFV-----K~n~~YYd~cA~iL~~~~l~ 312 (927)
+|.+||+|||-. |.+ -....|-+-|.+||..-+-+
T Consensus 308 ~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li~~a~~~ 353 (364)
T 3i12_A 308 DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALER 353 (364)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 456999999933 322 12346666677777665544
No 22
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.41 E-value=4e-12 Score=140.55 Aligned_cols=230 Identities=15% Similarity=0.238 Sum_probs=143.3
Q ss_pred CCcCeeeccccCCCchH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++-..-.+-.+ .+...+++.+ ||+-|+..+..+++||..+.++|+++|||+|++..+.+.. . ..
T Consensus 116 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~-------~-~~ 187 (386)
T 3e5n_A 116 AQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHT-------A-AH 187 (386)
T ss_dssp CCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEEEHHH-------H-TT
T ss_pred CCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc-------c-ch
Confidence 35788877632111111 3456666777 5667899999999999999999999999999999998621 0 00
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DI 211 (927)
.+...+ -..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++
T Consensus 188 ~~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~e-l~~a~~~a~~~~~~vlVEe~I~--G~E~ 248 (386)
T 3e5n_A 188 ADVDTL-IAQLGLPLFVKPANQG-----------SSVGVS----QVRTADA-FAAALALALAYDHKVLVEAAVA--GREI 248 (386)
T ss_dssp CCHHHH-HHHHCSSEEEEESBSC-----------SSTTCE----EECSGGG-HHHHHHHHTTTCSEEEEEECCC--SEEE
T ss_pred hhHHHH-HHhcCCCEEEEECCCC-----------cCCCEE----EECCHHH-HHHHHHHHHhCCCcEEEEcCCC--CeEE
Confidence 111111 1235689999999986 344442 2322221 111011 123467899999998 7999
Q ss_pred EEEEECCceeEEE---eecCCCCCC--ceeecC-CC--CceeeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeC
Q 002403 212 KVYTVGPEYAHAE---ARKSPVVDG--VVMRNP-DG--KEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE 278 (927)
Q Consensus 212 KvytVG~~~vhAe---~RkSPv~dG--~vrrN~-~g--ke~r~~v~Lt~e----Ek~iA~k~~~afgq~-VcGfDlLRs~ 278 (927)
.|-++|.....+. .+..+ .+ .+.... ++ .....|..|+++ -+++|.++++++|.. ++++|++.+.
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~--~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVH--DAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-------------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT
T ss_pred EEEEEeCCCceEEEeEEEEeC--CcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 9999988753332 33321 33 122222 22 334446677774 468999999999997 9999999885
Q ss_pred -CCcEEEecC---Cc---ccc-----ccchhhHHHHHHHHHHHHHHh
Q 002403 279 -GRSYVCDVN---GW---SFV-----KNSYKYYDDAACVLRKMFLEA 313 (927)
Q Consensus 279 -~~syV~DVN---Gw---SFV-----K~n~~YYd~cA~iL~~~~l~~ 313 (927)
|.+||+||| |+ |.+ .....|-+-|.+||..-+-+.
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~~r~ 373 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERH 373 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 459999999 43 222 123356666777776655443
No 23
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.40 E-value=4.6e-13 Score=148.22 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=155.4
Q ss_pred hhHHHHHHHhhcCCceEEEEeC-C---ceeecCC-------Cccc------------------CCcCeeeccccCCCch-
Q 002403 21 APMGQILDRLQAFGEFEVIHFG-D---KVILEDP-------IEKW------------------PICDCLIAFYSSGYPL- 70 (927)
Q Consensus 21 kPm~~IL~rL~~~~~f~viiF~-d---~vIL~e~-------ve~w------------------P~~D~lIsf~s~gfpl- 70 (927)
+--++|++-|.+.| |+|+.++ + ...+..+ ...| ..+|++++-..-.+-.
T Consensus 56 ~Sa~~v~~al~~~~-~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEd 134 (383)
T 3k3p_A 56 LSAESVMRAINYDN-FLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGED 134 (383)
T ss_dssp HHHHHHHHHSCTTT-EEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGCCTTCEEEEECCSTTTSS
T ss_pred HHHHHHHHHhhhcC-CEEEEEEecCCCCEEecccccccccccccccccccccccccccccccccCCCEEEEcCCCCCcch
Confidence 45678888887655 8887765 2 1221100 0122 1578888766544433
Q ss_pred HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCC-CCCCCEEEEeccCCCccccccccc-cceeeecCeeccCcE
Q 002403 71 EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYG-IPVPRYALVNREVPYQELDYFIEE-EDFVEVHGNRFWKPF 147 (927)
Q Consensus 71 ~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~g-Ip~P~t~~~~r~~p~~~~~~~~e~-~d~i~v~g~~~~kPf 147 (927)
-.+...+++.+ ||+-|+..+..+++||..+.++|+++| ||+|++..+.+.. +. ++...+ -..++.|+
T Consensus 135 g~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~---------~~~~~~~~~-~~~lg~Pv 204 (383)
T 3k3p_A 135 GSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGE---------PLESKLAEV-EEKLIYPV 204 (383)
T ss_dssp SHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTS---------CHHHHHHHH-HHHCCSSE
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCcc---------chhHHHHHH-HHhcCCCE
Confidence 24456677777 566789999999999999999999999 9999999998621 00 111111 12356899
Q ss_pred EEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEE---
Q 002403 148 VEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA--- 223 (927)
Q Consensus 148 VeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhA--- 223 (927)
|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.|-++|+....+
T Consensus 205 vVKP~~gg-----------ss~GV~----~v~~~~e-l~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~~~~~ 266 (383)
T 3k3p_A 205 FVKPANMG-----------SSVGIS----KAENRTD-LKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVKTTLP 266 (383)
T ss_dssp EEEECC-----------------CE----EESSHHH-HHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEECCC
T ss_pred EEEeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCeeEEee
Confidence 99999985 233332 2222111 111000 123467899999998 9999999998753322
Q ss_pred EeecCCCCCC--ceeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhCCc-eeEEEEEeeC-CCcEEEecCCcc---
Q 002403 224 EARKSPVVDG--VVMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGWS--- 290 (927)
Q Consensus 224 e~RkSPv~dG--~vrrN~~gk--e~r~~v~Lt~eE----k~iA~k~~~afgq~-VcGfDlLRs~-~~syV~DVNGwS--- 290 (927)
..+..+ .+ ++.+.-+.+ ....|..|+++. +++|.++++++|.. ++++|++.+. |.+||+|||--+
T Consensus 267 ~ei~~~--~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~t 344 (383)
T 3k3p_A 267 GEIVKD--VAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGFT 344 (383)
T ss_dssp EEEC-------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCC
T ss_pred EEEecC--CCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCCC
Confidence 222221 22 122222222 233456677654 68999999999997 9999999984 559999999432
Q ss_pred ---ccc-----cchhhHHHHHHHHHHHHHH
Q 002403 291 ---FVK-----NSYKYYDDAACVLRKMFLE 312 (927)
Q Consensus 291 ---FVK-----~n~~YYd~cA~iL~~~~l~ 312 (927)
.+- ....|-+-|.+||..-+-+
T Consensus 345 ~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 374 (383)
T 3k3p_A 345 QWSMYPLLWENMGLSYSVLIEELVSLAKEM 374 (383)
T ss_dssp --CHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 221 1234556666666655433
No 24
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.37 E-value=4.1e-12 Score=139.72 Aligned_cols=205 Identities=15% Similarity=0.197 Sum_probs=132.4
Q ss_pred CcCeeeccccCCCchH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++-..-.+-.+ .+..++++.+. |+-++..+..+++||..+.++|+++|||+|++..+.+.. ..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~----------~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPR----------ST 178 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEECTTC----------CC
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEEECcc----------cc
Confidence 5888888774332221 34566677775 555678999999999999999999999999999998631 00
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIK 212 (927)
.... .-..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.
T Consensus 179 ~~~~-~~~~lg~PvvVKP~~gg-----------ss~GV~----~v~~~~e-L~~a~~~a~~~~~~vlVEe~I~--G~E~~ 239 (373)
T 3lwb_A 179 LHRQ-ECERLGLPVFVKPARGG-----------SSIGVS----RVSSWDQ-LPAAVARARRHDPKVIVEAAIS--GRELE 239 (373)
T ss_dssp CCHH-HHHHHCSCEEEEESBCS-----------TTTTCE----EECSGGG-HHHHHHHHHTTCSSEEEEECCE--EEEEE
T ss_pred hhHH-HHHhcCCCEEEEeCCCC-----------CCCCEE----EeCCHHH-HHHHHHHHHhcCCCEEEeCCCC--CeEEE
Confidence 0001 12245689999999986 344442 2322221 111011 123467899999998 89999
Q ss_pred EEEECCcee-----EEEeecCCCCCC----c--eeecCCCC--ceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEE
Q 002403 213 VYTVGPEYA-----HAEARKSPVVDG----V--VMRNPDGK--EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDL 274 (927)
Q Consensus 213 vytVG~~~v-----hAe~RkSPv~dG----~--vrrN~~gk--e~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDl 274 (927)
|-++|.... ....+...-..+ - +..+.+.+ +...|..|++ +-+++|.++++++|. .+++||+
T Consensus 240 v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf 319 (373)
T 3lwb_A 240 CGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDF 319 (373)
T ss_dssp EEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEE
Confidence 999987532 122222110011 1 12222222 2334677775 557899999999999 5999999
Q ss_pred EeeCCCcEEEecCCc
Q 002403 275 LRCEGRSYVCDVNGW 289 (927)
Q Consensus 275 LRs~~~syV~DVNGw 289 (927)
+.+.+|.||+|||-.
T Consensus 320 ~~~~dg~~vlEIN~~ 334 (373)
T 3lwb_A 320 FLTDDGPVINEINTM 334 (373)
T ss_dssp EEETTEEEEEEEESS
T ss_pred EEECCCCEEEEecCC
Confidence 998655599999954
No 25
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.36 E-value=4.9e-12 Score=139.44 Aligned_cols=229 Identities=14% Similarity=0.161 Sum_probs=139.3
Q ss_pred CCcCeeeccccCCCchH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 55 PICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
..+|++++-..-.+-.+ .+..++++.+ ||+-++..+..++.||..+.++|+++|||+|++..+.+.. +.
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~ 167 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRD---------AT 167 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEEECTTS---------CC
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEechh---------hh
Confidence 35898888765444332 4567777888 5666889999999999999999999999999999998621 00
Q ss_pred cceeeecCeeccCc-EEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCce
Q 002403 133 EDFVEVHGNRFWKP-FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTD 210 (927)
Q Consensus 133 ~d~i~v~g~~~~kP-fVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~D 210 (927)
...+.---..++.| +|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |++
T Consensus 168 ~~~~~~~~~~lg~P~vvVKP~~gg-----------ss~Gv~----~v~~~~e-L~~a~~~a~~~~~~vlVEe~I~--G~E 229 (372)
T 3tqt_A 168 EGVYQRLLDRWGTSELFVKAVSLG-----------SSVATL----PVKTETE-FTKAVKEVFRYDDRLMVEPRIR--GRE 229 (372)
T ss_dssp TTHHHHHHHHC---CEEEEESSCC-----------SGGGEE----EECSHHH-HHHHHHHHTTTCSCEEEEECCC--SEE
T ss_pred hhHHHHHHHhcCCCeEEEEECCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCCEEEECCCC--CEE
Confidence 11111011235689 999999875 333331 2222211 111000 123467899999998 899
Q ss_pred eEEEEECCceeEE--EeecCCCCCC--ceeecCC-CC--ceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC
Q 002403 211 VKVYTVGPEYAHA--EARKSPVVDG--VVMRNPD-GK--EVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (927)
Q Consensus 211 IKvytVG~~~vhA--e~RkSPv~dG--~vrrN~~-gk--e~r~~v~Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~ 278 (927)
+.|-++|+....+ ..+.-| .++ .++..-+ |+ ....|..|++ +-+++|.++++++|.. +|+||++.+.
T Consensus 230 ~~v~vl~~~~~~~~~~~ei~~-~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~ 308 (372)
T 3tqt_A 230 IECAVLGNGAPKASLPGEIIP-HHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP 308 (372)
T ss_dssp EEEEEEESSSCEECCCEEEEC-C---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEeCCCceEeeeEEEec-CCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC
Confidence 9999999873221 111111 122 2233333 22 2334566776 4568999999999997 9999999885
Q ss_pred -CCcEEEecC---Cc---ccc-----ccchhhHHHHHHHHHHHHH
Q 002403 279 -GRSYVCDVN---GW---SFV-----KNSYKYYDDAACVLRKMFL 311 (927)
Q Consensus 279 -~~syV~DVN---Gw---SFV-----K~n~~YYd~cA~iL~~~~l 311 (927)
|.+||+||| || |.+ ..-..|-+-|.+||..-+-
T Consensus 309 dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~ 353 (372)
T 3tqt_A 309 NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAID 353 (372)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 569999999 54 222 1122455556666655443
No 26
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.35 E-value=2e-12 Score=137.03 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=122.0
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++|+.+....++ ....+.++..+. ++.|+..+..+++||....++|+++|||+|++..... +..
T Consensus 72 ~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~-----------~~~ 140 (331)
T 2pn1_A 72 GVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMA-----------SFE 140 (331)
T ss_dssp TCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSHH-----------HHH
T ss_pred CCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEecHH-----------Hhh
Confidence 478898876544444 344556666664 6789999999999999999999999999999864211 111
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
+.+ ....++.|+|+||..|. .|.|+. +++... ++.. .++....+|+||||+ |..+.|
T Consensus 141 ~~~--~~~~~~~P~vvKp~~g~-----------g~~gv~-~v~~~~----el~~---~~~~~~~~lvee~i~--G~e~~v 197 (331)
T 2pn1_A 141 EAL--AAGEVQLPVFVKPRNGS-----------ASIEVR-RVETVE----EVEQ---LFSKNTDLIVQELLV--GQELGV 197 (331)
T ss_dssp HHH--HTTSSCSCEEEEESBC------------------------------------------CEEEEECCC--SEEEEE
T ss_pred hhh--hcccCCCCEEEEeCCCC-----------CCCCeE-EeCCHH----HHHH---HHHhCCCeEEEecCC--CcEEEE
Confidence 111 01134589999999997 455663 433221 1211 233456899999998 577777
Q ss_pred EEEC----CceeEEEeecCCCCCCceeecCCCCcee-eeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecC
Q 002403 214 YTVG----PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVN 287 (927)
Q Consensus 214 ytVG----~~~vhAe~RkSPv~dG~vrrN~~gke~r-~~v~Lt~eEk~iA~k~~~afgq-~VcGfDlLRs~~~syV~DVN 287 (927)
.+++ ++++++..|.. +. ..+|... .+..+.++-+++|.++++++|. .+++||++...|++||+|||
T Consensus 198 ~~~~d~~~G~~~~~~~~~~------~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~g~~~~iEiN 269 (331)
T 2pn1_A 198 DAYVDLISGKVTSIFIKEK------LT--MRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDVAGTLYLSEIN 269 (331)
T ss_dssp EEEECTTTCCEEEEEEEEE------EE--EETTEEEEEEEECCHHHHHHHHHHHTTTCCCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEEE------EE--ecCCceeEeEEeccHHHHHHHHHHHHHhCCcceEEEEEEEcCCCEEEEEEe
Confidence 6665 56665554432 00 0122222 2335789999999999999999 69999999778889999999
Q ss_pred C
Q 002403 288 G 288 (927)
Q Consensus 288 G 288 (927)
.
T Consensus 270 ~ 270 (331)
T 2pn1_A 270 P 270 (331)
T ss_dssp S
T ss_pred C
Confidence 6
No 27
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.33 E-value=1.3e-12 Score=143.68 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=127.4
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|++++...... ...+.+.++..+. +.-|+..+..+++||....++|+++|||+|++..+... ++
T Consensus 61 ~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~ 127 (417)
T 2ip4_A 61 GIDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREP------------LE 127 (417)
T ss_dssp TCCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSH------------HH
T ss_pred CCCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCH------------HH
Confidence 4788887533221 2344556666674 44599999999999999999999999999999877641 22
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---ccCcceEEeeccCCCCcee
Q 002403 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~---r~~gsyIyeEFi~~~G~DI 211 (927)
..... ..++.|+|+||..|. .|.|+. +++ +. .++..-+... ..+..+|+||||+ |.++
T Consensus 128 ~~~~~-~~~~~P~vvKp~~~~-----------gg~Gv~-~v~---~~-~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~ 188 (417)
T 2ip4_A 128 ALAYL-EEVGVPVVVKDSGLA-----------AGKGVT-VAF---DL-HQAKQAVANILNRAEGGEVVVEEYLE--GEEA 188 (417)
T ss_dssp HHHHH-HHHCSSEEEECTTSC-----------SSTTCE-EES---CH-HHHHHHHHHHTTSSSCCCEEEEECCC--SCEE
T ss_pred HHHHH-HHcCCCEEEEECCCC-----------CCCCEE-EeC---CH-HHHHHHHHHHHhhccCCeEEEEECcc--CcEE
Confidence 11111 124579999999985 333432 111 11 0111000011 1136799999998 8899
Q ss_pred EEEEEC-CceeEEE--eec-CCCCCCceeecCCCCceeeeeeCCHHHH-----HHHHHHHHHh-----C-CceeEEEEEe
Q 002403 212 KVYTVG-PEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVLLTPNEK-----QMAREVCIAF-----R-QAVCGFDLLR 276 (927)
Q Consensus 212 KvytVG-~~~vhAe--~Rk-SPv~dG~vrrN~~gke~r~~v~Lt~eEk-----~iA~k~~~af-----g-q~VcGfDlLR 276 (927)
.|.+++ ++.+++. .|. -+..++...-|..+-+.-.|..|+++.. ++|.++++++ + ..+++||++.
T Consensus 189 sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~ 268 (417)
T 2ip4_A 189 TVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLML 268 (417)
T ss_dssp EEEEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEE
T ss_pred EEEEEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEE
Confidence 998883 3445543 232 2223444444544444556777888643 3477778876 4 3567899999
Q ss_pred eCCCcEEEecCC
Q 002403 277 CEGRSYVCDVNG 288 (927)
Q Consensus 277 s~~~syV~DVNG 288 (927)
+.+|+||+|||-
T Consensus 269 ~~~g~~viEiN~ 280 (417)
T 2ip4_A 269 TREGPKVLEFNA 280 (417)
T ss_dssp CSSCEEEEEEES
T ss_pred eCCCeEEEEEec
Confidence 877799999995
No 28
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.33 E-value=2.6e-12 Score=142.04 Aligned_cols=194 Identities=15% Similarity=0.186 Sum_probs=127.1
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.||++++.+.. +...+.+.++..+.++.|+..+..+++||....++| +++|||+|++..+... ++
T Consensus 82 ~~d~V~~~~e~--~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~------------~~ 147 (433)
T 2dwc_A 82 KPDAIIPEIEA--INLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTL------------DE 147 (433)
T ss_dssp CCSEEEECSSC--SCHHHHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSH------------HH
T ss_pred CCCEEEECccc--CCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCH------------HH
Confidence 68999988753 334566777788877889999999999999999999 8999999999987641 12
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 002403 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 209 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-----~~gsyIyeEFi~~~G~ 209 (927)
....- ..++.|+|+||..|. .|.|+. .+.+.. ++..-+.... .++.+|+||||+. |.
T Consensus 148 ~~~~~-~~~g~P~vvKp~~g~-----------gg~Gv~----~v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 209 (433)
T 2dwc_A 148 LYEAC-EKIGYPCHTKAIMSS-----------SGKGSY----FVKGPE-DIPKAWEEAKTKARGSAEKIIVEEHIDF-DV 209 (433)
T ss_dssp HHHHH-HHHCSSEEEEECCC-----------------E----EECSGG-GHHHHHHC---------CCEEEEECCCC-SE
T ss_pred HHHHH-HhcCCCEEEEECCCc-----------CCCCeE----EECCHH-HHHHHHHHHHhhcccCCCCEEEEccCCC-Ce
Confidence 11110 124589999999875 333432 222111 1110000111 2567999999986 88
Q ss_pred eeEEEEEC-----CceeEEE----eecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 002403 210 DVKVYTVG-----PEYAHAE----ARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (927)
Q Consensus 210 DIKvytVG-----~~~vhAe----~RkSPv~dG~vrrN~~gke~r~~v~Lt~e----Ek~iA~k~~~afgq-~VcGfDlL 275 (927)
++.|.+++ ++.++.. ..+. .+|... +.-.|..|+++ -+++|.++++++|. .++++|++
T Consensus 210 E~sv~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~------~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 281 (433)
T 2dwc_A 210 EVTELAVRHFDENGEIVTTFPKPVGHYQ--IDGDYH------ASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMF 281 (433)
T ss_dssp EEEECCEEEECTTSCEEEEEECCEEEEE--SSSSEE------EEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEE
T ss_pred eEEEEEEecccCCCCEeEEEecccceEE--EcCEEE------EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 99988773 4432221 1111 133332 22236678874 47889999999998 79999999
Q ss_pred eeCCCcEEEecCCc
Q 002403 276 RCEGRSYVCDVNGW 289 (927)
Q Consensus 276 Rs~~~syV~DVNGw 289 (927)
.+.+++||+|||.-
T Consensus 282 ~~~~~~~viEiN~R 295 (433)
T 2dwc_A 282 VKGDKVWANEVSPR 295 (433)
T ss_dssp EETTEEEEEEEESS
T ss_pred EeCCcEEEEEEeCC
Confidence 99889999999953
No 29
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.33 E-value=1.5e-12 Score=141.26 Aligned_cols=196 Identities=17% Similarity=0.240 Sum_probs=128.4
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL-~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.||++++.+.. +...+.+.++..+.++.|+..+..+++||....++| +++|||+|++..+... . +..+
T Consensus 74 ~~d~v~~~~e~--~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~--~-------~~~~ 142 (391)
T 1kjq_A 74 KPHYIVPEIEA--IATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSE--S-------LFRE 142 (391)
T ss_dssp CCSEEEECSSC--SCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSH--H-------HHHH
T ss_pred CCCEEEECCCc--CCHHHHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCH--H-------HHHH
Confidence 68999987753 334566777788877889999999999999999999 8999999999987641 0 1111
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 002403 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 209 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-----~~gsyIyeEFi~~~G~ 209 (927)
++. .++.|+|+||..|. .|.|+. + +.+.. ++..-+.... .+..+|+||||+. |.
T Consensus 143 ~~~----~~g~P~vvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 201 (391)
T 1kjq_A 143 AVA----DIGYPCIVKPVMSS-----------SGKGQT-F---IRSAE-QLAQAWKYAQQGGRAGAGRVIVEGVVKF-DF 201 (391)
T ss_dssp HHH----HHCSSEEEEESCC--------------CCCE-E---ECSGG-GHHHHHHHHHHHSGGGCCCEEEEECCCC-SE
T ss_pred HHH----hcCCCEEEEeCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhhcccCCCCEEEEEecCC-Ce
Confidence 121 24579999999875 333432 1 21111 1110000111 2568999999986 88
Q ss_pred eeEEEEECCc-eeEEEeecCCCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 002403 210 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (927)
Q Consensus 210 DIKvytVG~~-~vhAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~~~syV 283 (927)
++.|.+++.. -++ -.|+. +.++.+....+.-.|..|++ +-+++|.++++++|. .++++|++.+.+++||
T Consensus 202 E~sv~~~~~~~g~~----~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~~~~v 276 (391)
T 1kjq_A 202 EITLLTVSAVDGVH----FCAPV-GHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDEVIF 276 (391)
T ss_dssp EEEEEEEEETTEEE----ECCCE-EEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEeCCCeE----EccCc-ceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCcEEE
Confidence 9999887531 111 11111 12222111112223666886 356789999999998 7999999999889999
Q ss_pred EecCC
Q 002403 284 CDVNG 288 (927)
Q Consensus 284 ~DVNG 288 (927)
+|||.
T Consensus 277 iEiN~ 281 (391)
T 1kjq_A 277 SEVSP 281 (391)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99995
No 30
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.33 E-value=8.6e-12 Score=135.46 Aligned_cols=188 Identities=20% Similarity=0.237 Sum_probs=125.8
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.+|++++.+.. ++..+.++++..+..+.|+..+..+++||....++|+++|||+|++..+... +++
T Consensus 62 ~~d~v~~~~e~--~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~ 127 (380)
T 3ax6_A 62 GSDVTTYDLEH--IDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDL------------ESD 127 (380)
T ss_dssp TCSEEEESCSC--SCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSH------------HHH
T ss_pred cCCEEEecccC--CCHHHHHHHHHCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCH------------HHH
Confidence 47888876643 3355667788888657799999999999999999999999999999887641 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvyt 215 (927)
+. .++.|+|+||..|. | .|.|+. .+.+.. ++.. .++ ..+|+||||+. |.++.|.+
T Consensus 128 ~~----~~~~P~vvKp~~~~------y----~g~Gv~----~v~~~~-el~~---~~~--~~~lvEe~i~~-g~e~sv~~ 182 (380)
T 3ax6_A 128 VR----EFGFPVVQKARKGG------Y----DGRGVF----IIKNEK-DLEN---AIK--GETYLEEFVEI-EKELAVMV 182 (380)
T ss_dssp HH----TTCSSEEEEESCCC---------------EE----EECSGG-GGGG---CCC--SSEEEEECCCE-EEEEEEEE
T ss_pred HH----hcCCCEEEEecCCC------C----CCCCeE----EECCHH-HHHH---Hhc--CCEEEEeccCC-CeeEEEEE
Confidence 21 24579999999874 0 122332 232221 1111 122 78999999975 89999999
Q ss_pred ECC---ceeE-EEeecC--CCCCCceeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCC-CcEE
Q 002403 216 VGP---EYAH-AEARKS--PVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEG-RSYV 283 (927)
Q Consensus 216 VG~---~~vh-Ae~RkS--Pv~dG~vrrN~~gke~r~~v~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~~-~syV 283 (927)
++. ++.. ...++- + ..|.. ...-.|..|++ +-+++|.++++++|. .++++|++.+.+ .+||
T Consensus 183 ~~~~~G~~~~~~~~~~~~~~-~~~~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~v 255 (380)
T 3ax6_A 183 ARNEKGEIACYPVVEMYFDE-DANIC------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILV 255 (380)
T ss_dssp EECSSCCEEEEEEEEEC---------------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEE
T ss_pred EECCCCCEEEECCeeeeecc-cCCee------EEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEE
Confidence 864 3322 111111 1 01211 12234666776 567889999999999 499999999855 5999
Q ss_pred EecCCc
Q 002403 284 CDVNGW 289 (927)
Q Consensus 284 ~DVNGw 289 (927)
+|||.-
T Consensus 256 iEiN~R 261 (380)
T 3ax6_A 256 NEIAPR 261 (380)
T ss_dssp EEEESS
T ss_pred EEecCC
Confidence 999964
No 31
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.33 E-value=1.7e-11 Score=132.22 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=114.7
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.+|++++.+.... . ..+++++. ++.|+..+..+++||..+.++|+++|||+|++..+. .. +..++
T Consensus 57 ~~d~v~~~~e~~~-~-~~~~~l~~---~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~---------~~~~~ 121 (365)
T 2z04_A 57 SCDIITYEFEHIK-D-EVLEKCES---KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-RD---------EIIDA 121 (365)
T ss_dssp HCSEEEESSSCCC-H-HHHHHHTT---TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC------------------
T ss_pred cCCEEEECCCCCc-H-HHHHHHhh---hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-HH---------HHHHH
Confidence 5799998775443 2 35565543 889999999999999999999999999999998776 21 12222
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvyt 215 (927)
+. .++.|+|+||..|. | .|.|+. +.+........+. ....+..+|+||||+. |.++.|.+
T Consensus 122 ~~----~~~~P~vvKp~~~~------~----~g~Gv~-~v~~~~el~~~~~----~~~~~~~~lvEe~i~~-g~e~sv~~ 181 (365)
T 2z04_A 122 LK----SFKLPVVIKAEKLG------Y----DGKGQY-RIKKLEDANQVVK----NHDKEESFIIEEFVKF-EAEISCIG 181 (365)
T ss_dssp ----------CEEEECC---------------------------------------------CEEEECCCC-SEEEEEEE
T ss_pred HH----hcCCCEEEEEcCCC------c----CCCCeE-EECCHHHHHHHHH----HhccCCCEEEEccCCC-CEEEEEEE
Confidence 22 24579999999875 1 234553 4433322111111 1113578999999985 89999999
Q ss_pred ECC---ceeEE-EeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEeeCC-CcEEEecCCc
Q 002403 216 VGP---EYAHA-EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCDVNGW 289 (927)
Q Consensus 216 VG~---~~vhA-e~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afgq~-VcGfDlLRs~~-~syV~DVNGw 289 (927)
++. ++++. ..++ +.++......-.|..+.++.+++|.++++++|.. ++++|++.+.+ .+||+|||--
T Consensus 182 ~~d~~G~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R 254 (365)
T 2z04_A 182 VRDREGKTYFYPQPFN-------KHEEGILIYNYVPYAKLKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPR 254 (365)
T ss_dssp EECTTCCEEECCEEEE-------EEETTEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESS
T ss_pred EECCCCCEEEECCEEE-------EEeCCEeEEEECCHhHHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccC
Confidence 862 33321 1111 1222111123446667889999999999999995 99999999854 4999999964
No 32
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.32 E-value=2.4e-12 Score=139.26 Aligned_cols=195 Identities=17% Similarity=0.146 Sum_probs=128.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.+|++++.+.. ++..++++++..+ +..|+..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 59 ~~d~v~~~~e~--~~~~~~~~l~~~g-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~ 123 (369)
T 3aw8_A 59 GLALVTYEFEN--VPVEAARRLEGRL-PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGP------------EDL 123 (369)
T ss_dssp TCSEEEECCTT--CCHHHHHHHHHHS-CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSH------------HHH
T ss_pred CCCEEEECCCC--cCHHHHHHHHHcC-CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCH------------HHH
Confidence 58999877744 4466677888888 89999999999999999999999999999999987651 222
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvyt 215 (927)
.... ..++.|+|+||..|. | .|.|+. + +.+.. ++..-+... .+..+|+||||+. |.++.|.+
T Consensus 124 ~~~~-~~~g~P~vvKp~~~~------~----~g~Gv~-~---v~~~~-el~~~~~~~-~~~~~lvEe~i~~-g~e~sv~~ 185 (369)
T 3aw8_A 124 EEGL-KRVGLPALLKTRRGG------Y----DGKGQA-L---VRTEE-EALEALKAL-GGRGLILEGFVPF-DREVSLLA 185 (369)
T ss_dssp HHHH-TTTCSSEEEEECCC----------------EE-E---ECSHH-HHHHHHTTT-CSSSEEEEECCCC-SEEEEEEE
T ss_pred HHHH-HHcCCCEEEEEcCCC------C----CcceEE-E---ECCHH-HHHHHHHhc-CCCcEEEEEcCCC-CEEEEEEE
Confidence 1111 124589999999874 1 122331 1 21111 111000011 1567999999985 89999998
Q ss_pred ECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEec
Q 002403 216 VGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDV 286 (927)
Q Consensus 216 VG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs~~~syV~DV 286 (927)
++. +++ +..+ ...+.++..+...-.|.. |++ +-+++|.++++++|.. ++++|++.+.+++||+||
T Consensus 186 ~~d~~G~~~-~~~~-----~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~~~~viEi 259 (369)
T 3aw8_A 186 VRGRTGEVA-FYPL-----VENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVGEELLFNEM 259 (369)
T ss_dssp EECTTSCEE-ECCC-----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEE
T ss_pred EECCCCCEE-EECC-----eeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEEEEE
Confidence 873 333 2211 112223222222233555 775 4577889999999996 999999998878999999
Q ss_pred CCc
Q 002403 287 NGW 289 (927)
Q Consensus 287 NGw 289 (927)
|--
T Consensus 260 N~R 262 (369)
T 3aw8_A 260 APR 262 (369)
T ss_dssp ESS
T ss_pred eCC
Confidence 953
No 33
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.29 E-value=2.8e-12 Score=139.47 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=129.0
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~ 132 (927)
.+|++++-.. |+.- -.....+++.+ ||+=.+..+..++.||..+.++|+++|||+|++..+.+.. .
T Consensus 97 ~~D~vf~~l~-G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~ 165 (357)
T 4fu0_A 97 KVDLVFPVLH-GKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFN----------E 165 (357)
T ss_dssp ECSEEEECCC-SHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEGGG----------H
T ss_pred CCCEEEECCc-CccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecCCC----------h
Confidence 4676665422 2211 13456677888 5667999999999999999999999999999999987621 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DI 211 (927)
...+.---..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+++|+||+ |+.+
T Consensus 166 ~~~~~~~~~~lg~PvvVKP~~gg-----------~s~Gv~----~v~~~~e-l~~~~~~a~~~~~~vlvE~~i~--G~e~ 227 (357)
T 4fu0_A 166 EAAMKEIEANLTYPLFIKPVRAG-----------SSFGIT----KVIEKQE-LDAAIELAFEHDTEVIVEETIN--GFEV 227 (357)
T ss_dssp HHHHHHHHHHCCSSEEEEETTCS-----------SSTTCE----EESSHHH-HHHHHHHHTTTCSEEEEEECCC--SEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCCC-----------CCCceE----EeccHHh-HHHHHHHHhccCCeEEEEEecC--CEEE
Confidence 11111011235689999999986 444542 2322211 111111 234567899999994 8999
Q ss_pred EEEEECCceeEE-----EeecCCCCCCceee----cCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEee
Q 002403 212 KVYTVGPEYAHA-----EARKSPVVDGVVMR----NPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC 277 (927)
Q Consensus 212 KvytVG~~~vhA-----e~RkSPv~dG~vrr----N~~gke~r~~v~Lt~eE----k~iA~k~~~afgq-~VcGfDlLRs 277 (927)
-|.++|.....+ ..+. .+.++. +....+...|..|+++. +++|.++++++|. .+|+||++.+
T Consensus 228 ~v~vl~~~~~~~~~v~~~~~~----~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~ 303 (357)
T 4fu0_A 228 GCAVLGIDELIVGRVDEIELS----SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT 303 (357)
T ss_dssp EEEEEESSSEEECCCEEEEEC----HHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEecCCceEEEEEEEEcc----cccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEe
Confidence 999888764322 1111 111111 11122334467788754 5789999999998 4999999887
Q ss_pred C-CCcEEEecCCc
Q 002403 278 E-GRSYVCDVNGW 289 (927)
Q Consensus 278 ~-~~syV~DVNGw 289 (927)
. |.+||+|||--
T Consensus 304 ~dg~~~vlEvNt~ 316 (357)
T 4fu0_A 304 PSGEIVFNEVNTI 316 (357)
T ss_dssp TTCCEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 4 55999999943
No 34
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.29 E-value=2.9e-12 Score=139.81 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=126.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.+|++++. +.-.++..+.+.++..+. ..|+.++..+++||....++|+++|||+|++..+... ++.
T Consensus 71 ~~d~v~~~-~~~~~~~~~a~~~~~~gl-~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~ 136 (403)
T 4dim_A 71 NLDGAATC-CLDTGIVSLARICDKENL-VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNE------------NEL 136 (403)
T ss_dssp CCSEEECC-SCSTTHHHHHHHHHHHTC-SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSH------------HHH
T ss_pred CCCEEEeC-CcchhHHHHHHHHHHcCc-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHH
Confidence 47899986 333444444444555554 4799999999999999999999999999999877641 222
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---ccCcceEEeeccCCCCceeE
Q 002403 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~---r~~gsyIyeEFi~~~G~DIK 212 (927)
... -..++.|+|+||..|. .|.|+. .+.+... +..-.... ..++.+|+||||+-.--+|.
T Consensus 137 ~~~-~~~~g~P~vvKp~~g~-----------gg~Gv~----~v~~~~e-l~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~ 199 (403)
T 4dim_A 137 KNA-LENLKLPVIVKATDLQ-----------GSKGIY----IAKKEEE-AIDGFNETMNLTKRDYCIVEEFIEGYEFGAQ 199 (403)
T ss_dssp HHH-HHTSCSSEEEECSCC----------------CE----EESSHHH-HHHHHHHHHHHCSSSCCEEEECCCSEEEEEE
T ss_pred HHH-HhcCCCCEEEEECCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCcCCcEEEEEccCCcEEEEE
Confidence 111 0124589999999986 333332 2221111 11000011 13577999999996556677
Q ss_pred EEEECCceeEEEeecCCCCCCceeecCC-CC--ceeeeeeCCHHH----HHHHHHHHHHhCCc--eeEEEEEeeCCCcEE
Q 002403 213 VYTVGPEYAHAEARKSPVVDGVVMRNPD-GK--EVRYPVLLTPNE----KQMAREVCIAFRQA--VCGFDLLRCEGRSYV 283 (927)
Q Consensus 213 vytVG~~~vhAe~RkSPv~dG~vrrN~~-gk--e~r~~v~Lt~eE----k~iA~k~~~afgq~--VcGfDlLRs~~~syV 283 (927)
+++.++++...... +.+..+.+ +. +...|..|+++. .++|.++++++|.. +++||++.+.+++||
T Consensus 200 ~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~~~~~~ 273 (403)
T 4dim_A 200 AFVYKNDVLFVMPH------GDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKDNEVYI 273 (403)
T ss_dssp EEEETTEEEEEEEE------EEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEE
T ss_pred EEEECCEEEEEEEe------cceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEECCcEEE
Confidence 77777776543311 11111111 11 233466788765 67999999999986 789999999889999
Q ss_pred EecCCc
Q 002403 284 CDVNGW 289 (927)
Q Consensus 284 ~DVNGw 289 (927)
+|||.-
T Consensus 274 iEiN~R 279 (403)
T 4dim_A 274 IELTGR 279 (403)
T ss_dssp EEEESS
T ss_pred EEEcCC
Confidence 999954
No 35
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.27 E-value=4e-12 Score=140.45 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=138.3
Q ss_pred hhHHHHHHHhhcCCceEEEEeCCc--------eeec-CCCccc---CCcCeeeccccCCCchHHHHHHHHhcCCcccCCc
Q 002403 21 APMGQILDRLQAFGEFEVIHFGDK--------VILE-DPIEKW---PICDCLIAFYSSGYPLEKAESYATLRKPFLVNEL 88 (927)
Q Consensus 21 kPm~~IL~rL~~~~~f~viiF~d~--------vIL~-e~ve~w---P~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl 88 (927)
--++.|...+.+... +|++..+. . +| +.+..+ -.+|++++..-.+ .+..+.+.+.. +..|+.
T Consensus 25 gr~~a~a~~~a~~~g-~v~~~~~np~~~~~d~~-id~~~l~~~~~~~~~d~V~~~~E~~-~~a~~~~~l~~---~~g~~~ 98 (412)
T 1vkz_A 25 GREHAIGWAFAKQGY-EVHFYPGNAGTKRDGTN-HPYEGEKTLKAIPEEDIVIPGSEEF-LVEGVSNWRSN---VFGPVK 98 (412)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEECCTTGGGTSEE-CCCCTHHHHHTSCSSCEECCSSGGG-TCC-----CTT---BSSCCH
T ss_pred HHHHHHHHHHHhCCC-CEEEECCChhhhccccc-CCHHHHHHHHHHcCCCEEEECCcHH-HHHHHHHHhhh---hhCCCH
Confidence 345666666644333 88887431 1 11 111111 2579998843332 22344554443 677999
Q ss_pred hhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCC
Q 002403 89 EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSA 167 (927)
Q Consensus 89 ~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~ 167 (927)
.+..+++||..+.++|+++|||+|++..+... ++....- ..++.|+|+||..|. ..++++.....
T Consensus 99 ~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~e~~~~~-~~~g~PvvvKp~~~~gg~Gv~~v~~~~- 164 (412)
T 1vkz_A 99 EVARLEGSKVYAKRFMKKYGIRTARFEVAETP------------EELREKI-KKFSPPYVIKADGLARGKGVLILDSKE- 164 (412)
T ss_dssp HHHHHHHCHHHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-TTSCSSEEEEESSCCSSCCEEEESSHH-
T ss_pred HHHHHhcCHHHHHHHHHHcCCCCCCEEEECCH------------HHHHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH-
Confidence 99999999999999999999999999877641 2222111 124589999999985 12333222111
Q ss_pred CChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEEC-CceeEEEe---ecCCCCCCceeecCCCCc
Q 002403 168 GGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG-PEYAHAEA---RKSPVVDGVVMRNPDGKE 243 (927)
Q Consensus 168 GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG-~~~vhAe~---RkSPv~dG~vrrN~~gke 243 (927)
-....++.+-+.+..|. ..+.+|+||||+ |..+.|.+++ ++.+.+.. ..-+..++...-|+.+-+
T Consensus 165 --el~~a~~~~~~~~~~~g-------~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 233 (412)
T 1vkz_A 165 --ETIEKGSKLIIGELIKG-------VKGPVVIDEFLA--GNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMG 233 (412)
T ss_dssp --HHHHHHHHHHHTSSSTT-------CCSCEEEEECCC--SEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSE
T ss_pred --HHHHHHHHHHhhccccC-------CCCeEEEEECCc--CcEEEEEEEECCCEEEEeeeeEeeeeccCCCCCCCCCCce
Confidence 01111111110000111 124899999998 8899988873 33333322 111112333333443333
Q ss_pred eeeeeeCCHHH----HHHHHHHHHHh-----CC-ceeEEEEEeeCCCcEEEecCC
Q 002403 244 VRYPVLLTPNE----KQMAREVCIAF-----RQ-AVCGFDLLRCEGRSYVCDVNG 288 (927)
Q Consensus 244 ~r~~v~Lt~eE----k~iA~k~~~af-----gq-~VcGfDlLRs~~~syV~DVNG 288 (927)
.-.|..|+++. +++|.++++++ +. .++++|++.+.+|+||+|||-
T Consensus 234 ~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g~~viEiN~ 288 (412)
T 1vkz_A 234 SWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNV 288 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEES
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCCcEEEEEec
Confidence 44577788754 67899999999 44 678899999877799999995
No 36
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.26 E-value=2.8e-12 Score=143.07 Aligned_cols=207 Identities=15% Similarity=0.122 Sum_probs=124.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|++|+.+.... ...+.+.++..+..+ -++..+..+++||....++|+++|||+|++..+.... +..+
T Consensus 83 ~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~ 152 (451)
T 2yrx_A 83 AIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYE---------EAKA 152 (451)
T ss_dssp TCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHH---------HHHH
T ss_pred CCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHH---------HHHH
Confidence 4788887433221 234556666777544 4899999999999999999999999999998876410 1112
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
++. .++.|+|+||..|. -.++++.. +.. -....++.+-.. +.|. ..+..+|+||||+ |.++.|
T Consensus 153 ~~~----~~~~PvVvKp~~~~gg~Gv~~v~--~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~sv 216 (451)
T 2yrx_A 153 YIE----QKGAPIVIKADGLAAGKGVTVAQ--TVE-EALAAAKAALVD-GQFG------TAGSQVVIEEYLE--GEEFSF 216 (451)
T ss_dssp HHH----HHCSSEEEEECC----CCEEEES--SHH-HHHHHHHHHHHH-SCCB------TTBCCEEEEECCC--SEEEEE
T ss_pred HHH----hcCCcEEEEeCCCCCCCcEEEEC--CHH-HHHHHHHHHHhc-cccC------CCCCeEEEEECCc--CcEEEE
Confidence 221 24579999999985 12222221 110 011111111100 0011 0246799999999 788888
Q ss_pred EEE-CCceeEEE--eec-CCCCCCceeecCCCCceeeeee-CCHHH-----HHHHHHHHHHh---CC---ceeEEEEEee
Q 002403 214 YTV-GPEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNE-----KQMAREVCIAF---RQ---AVCGFDLLRC 277 (927)
Q Consensus 214 ytV-G~~~vhAe--~Rk-SPv~dG~vrrN~~gke~r~~v~-Lt~eE-----k~iA~k~~~af---gq---~VcGfDlLRs 277 (927)
.++ .++.+.+. .|. ..+.++...-|..+.+.-.|.. |+++. +++|.++++++ |. .+++||++.+
T Consensus 217 ~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~ 296 (451)
T 2yrx_A 217 MAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMAT 296 (451)
T ss_dssp EEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE
T ss_pred EEEEcCCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe
Confidence 776 33444443 221 2223444333444444445665 88864 33567777776 43 4677899999
Q ss_pred CCCcEEEecCC
Q 002403 278 EGRSYVCDVNG 288 (927)
Q Consensus 278 ~~~syV~DVNG 288 (927)
.+|+||+|||-
T Consensus 297 ~~g~~viEiN~ 307 (451)
T 2yrx_A 297 ANGPKVIEFNA 307 (451)
T ss_dssp TTEEEEEEEES
T ss_pred CCCcEEEEEec
Confidence 87899999994
No 37
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.26 E-value=4e-12 Score=139.98 Aligned_cols=207 Identities=17% Similarity=0.144 Sum_probs=126.6
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++..- .++ ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++..+... +
T Consensus 62 ~~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~ 127 (424)
T 2yw2_A 62 GVDFTIVGPE--APLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDF------------E 127 (424)
T ss_dssp TCSEEEECSH--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------H
T ss_pred CCCEEEECCc--hHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCH------------H
Confidence 3688887432 232 344566667774 44599999999999999999999999999999877641 2
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+....- ..++.|+|+||..|. ..++++..... -....++.+.+. +.|. ..+..+|+||||+ |..+.
T Consensus 128 ~~~~~~-~~~~~PvvvKp~~g~gg~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~s 194 (424)
T 2yw2_A 128 KAKEYV-EKVGAPIVVKADGLAAGKGAVVCETVE---KAIETLDRFLNK-KIFG------KSSERVVIEEFLE--GEEAS 194 (424)
T ss_dssp HHHHHH-HHHCSSEEEEESSCCTTCSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEE
T ss_pred HHHHHH-HHcCCcEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CcEEE
Confidence 221111 124579999999885 22333222111 011222222110 1111 0246799999998 77888
Q ss_pred EEEEC-CceeEE--Eeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---CC---ceeEEEEEe
Q 002403 213 VYTVG-PEYAHA--EARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLR 276 (927)
Q Consensus 213 vytVG-~~~vhA--e~Rk-SPv~dG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~k~~~af---gq---~VcGfDlLR 276 (927)
|.++. ++.+++ +.|. ..+.++...-|+.+-+.-.|.. |+++.. ++|.++++++ |. .+++||++.
T Consensus 195 v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~ 274 (424)
T 2yw2_A 195 YIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMI 274 (424)
T ss_dssp EEEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred EEEEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 77663 334443 3332 2223444334443434445665 888653 5677888877 43 467799999
Q ss_pred eCCCcEEEecCCc
Q 002403 277 CEGRSYVCDVNGW 289 (927)
Q Consensus 277 s~~~syV~DVNGw 289 (927)
+.+|+||+|||.-
T Consensus 275 ~~~g~~viEiN~R 287 (424)
T 2yw2_A 275 TKEGPKVLEFNVR 287 (424)
T ss_dssp ETTEEEEEEEESS
T ss_pred eCCCcEEEEEecC
Confidence 9777999999964
No 38
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.23 E-value=2.2e-12 Score=142.04 Aligned_cols=206 Identities=17% Similarity=0.154 Sum_probs=124.7
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++.+. .++ ..+.+.++..+..+ -|+..+..+++||....++|+++|||+|++..+.... +..
T Consensus 62 ~~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~ 130 (422)
T 2xcl_A 62 QVGLTIVGPE--VPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFD---------EAK 130 (422)
T ss_dssp TEEEEEECSH--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHH---------HHH
T ss_pred CCCEEEECCc--HHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHH---------HHH
Confidence 3677776433 232 34556676777544 4999999999999999999999999999998876410 111
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+++. .++.|+|+||..|. -.++++..... -....++.+-+. +.|. ..+..+|+||||+ |.++.
T Consensus 131 ~~~~----~~~~P~vvKp~~~~~g~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~s 194 (422)
T 2xcl_A 131 AYVQ----EKGAPIVIKADGLAAGKGVTVAMTEE---EAIACLHDFLED-EKFG------DASASVVIEEYLS--GEEFS 194 (422)
T ss_dssp HHHH----HHCSSEEEEESSCGGGTCEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEE
T ss_pred HHHH----hcCCCEEEEeCCCCCCCcEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCc--CcEEE
Confidence 1221 24579999999985 12333322111 111222222110 0111 0246799999998 88999
Q ss_pred EEEEC-CceeEE--Eeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---CC---ceeEEEEEe
Q 002403 213 VYTVG-PEYAHA--EARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLR 276 (927)
Q Consensus 213 vytVG-~~~vhA--e~Rk-SPv~dG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~k~~~af---gq---~VcGfDlLR 276 (927)
|.++. ++.+++ ..|. ..+.++...-|+.|-+.-.|.. |+++.. ++|.++++++ |. .+++||++.
T Consensus 195 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~ 274 (422)
T 2xcl_A 195 LMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLML 274 (422)
T ss_dssp EEEEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred EEEEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEE
Confidence 88773 333443 2221 1122333333333333445655 887643 3677788776 43 467789999
Q ss_pred eCCCcEEEecCC
Q 002403 277 CEGRSYVCDVNG 288 (927)
Q Consensus 277 s~~~syV~DVNG 288 (927)
+.+|+||+|||.
T Consensus 275 ~~~g~~viEiN~ 286 (422)
T 2xcl_A 275 TENGSKVIEFNA 286 (422)
T ss_dssp ETTEEEEEEEES
T ss_pred eCCCcEEEEEec
Confidence 987899999995
No 39
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.23 E-value=3.4e-11 Score=132.90 Aligned_cols=203 Identities=15% Similarity=0.193 Sum_probs=123.9
Q ss_pred cCeeeccccCCCchHHHH-HHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 57 CDCLIAFYSSGYPLEKAE-SYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~kai-~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
+|++|++.-.+.++...+ +.+.+. =|+.++..+++||....++|+++|||+|++..+... ++.
T Consensus 76 id~V~~~~e~~~~~~a~l~e~lglp----g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~ 139 (425)
T 3vot_A 76 FDGVMTLFEPALPFTAKAAEALNLP----GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTL------------ADL 139 (425)
T ss_dssp CSEEECCCGGGHHHHHHHHHHTTCS----SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSG------------GGG
T ss_pred CCEEEECCchhHHHHHHHHHHcCCC----CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcH------------HHH
Confidence 577888766666553322 333322 368899999999999999999999999999988752 111
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~-~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
. ...++.|+|+||..|. -.+|++-.... -....++.+...+. .... ....+..+|+||||+-.--.|-+
T Consensus 140 ~---~~~~g~P~vvKp~~g~gs~Gv~~v~~~~---el~~a~~~~~~~~~---~~~~~~~~~~~~~lvEe~i~G~e~sv~~ 210 (425)
T 3vot_A 140 E---NRKLSYPLVVKPVNGFSSQGVVRVDDRK---ELEEAVRKVEAVNQ---RDLNRFVHGKTGIVAEQFIDGPEFAIET 210 (425)
T ss_dssp T---TCCCCSSEEEEESCC-----CEEECSHH---HHHHHHHHHHHHTT---SSHHHHHTTCCCEEEEECCCSCEEEEEE
T ss_pred H---HhhcCCcEEEEECCCCCCCCceEechHH---HHHHHHHHHHhhhh---hhhhhhccCCCcEEEEEEecCcEEEEEE
Confidence 1 1345689999999985 12222221111 01122222211000 0000 11246779999999744345566
Q ss_pred EEECCceeE-EEeecCCCCCCceeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC--ceeEEEEEeeCC-CcEEEe
Q 002403 214 YTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCEG-RSYVCD 285 (927)
Q Consensus 214 ytVG~~~vh-Ae~RkSPv~dG~vrrN~~gke~r~~v~Lt~eE----k~iA~k~~~afgq--~VcGfDlLRs~~-~syV~D 285 (927)
++.++++.. +..++-. ..|. +....+...|..|+++. .++|.++++++|. .++.+|++.+.+ .+||+|
T Consensus 211 ~~~~g~~~~~~~~~~~~-~~~~---~~~~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iE 286 (425)
T 3vot_A 211 LSIQGNVHVLSIGYKGN-SKGP---FFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIE 286 (425)
T ss_dssp EEETTEEEEEEEEEEEC-CCCS---BCCCCEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEE
T ss_pred EEeCCcEEEEeEEEEec-cCCC---ccccceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEE
Confidence 766766533 3333332 1222 22234445678888764 4678999999997 499999998865 499999
Q ss_pred cCC
Q 002403 286 VNG 288 (927)
Q Consensus 286 VNG 288 (927)
||.
T Consensus 287 iN~ 289 (425)
T 3vot_A 287 VGA 289 (425)
T ss_dssp EES
T ss_pred Eec
Confidence 995
No 40
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.22 E-value=9e-11 Score=128.41 Aligned_cols=233 Identities=17% Similarity=0.220 Sum_probs=146.8
Q ss_pred EEEEeecCcccCChhHHHHHHHhhcCCceEEEEeCCc-----------eeecCC-----C-cccCCcCeeeccccCCCch
Q 002403 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDK-----------VILEDP-----I-EKWPICDCLIAFYSSGYPL 70 (927)
Q Consensus 8 ~iGVCam~~Ka~SkPm~~IL~rL~~~~~f~viiF~d~-----------vIL~e~-----v-e~wP~~D~lIsf~s~gfpl 70 (927)
+|||.---. --+.+...+.+.| ++++++... .+.... + +-...||++...+ ...+.
T Consensus 16 ~IlIlG~G~-----~g~~la~aa~~~G-~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~-e~~~~ 88 (389)
T 3q2o_A 16 TIGIIGGGQ-----LGRMMALAAKEMG-YKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEF-ENIDY 88 (389)
T ss_dssp EEEEECCSH-----HHHHHHHHHHHTT-CEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESC-CCCCH
T ss_pred EEEEECCCH-----HHHHHHHHHHHcC-CEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecc-ccccH
Confidence 566654332 2455666666655 777777521 111100 0 1123478764333 34444
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002403 71 EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (927)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (927)
.++++++..+. +.|+..+..+++||....++|+++|||+|++..+... ++.... -..++.|+|+|
T Consensus 89 -~~~~~l~~~g~-~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~~~~-~~~~g~P~vvK 153 (389)
T 3q2o_A 89 -RCLQWLEKHAY-LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQ------------EQLTEA-IAELSYPSVLK 153 (389)
T ss_dssp -HHHHHHHHHSC-CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHCSSEEEE
T ss_pred -HHHHHHHhhCc-cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHHHHH-HHhcCCCEEEE
Confidence 45566767765 7799999999999999999999999999999988752 222111 11356899999
Q ss_pred ecccc-C-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC---ceeE---
Q 002403 151 PVHGD-D-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAH--- 222 (927)
Q Consensus 151 pv~Ge-d-Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~---~~vh--- 222 (927)
|..|. + .++++...... ....++.. .++.+|+||||+ ++.++.|.+++. +++.
T Consensus 154 p~~~~~~g~Gv~~v~~~~e---l~~~~~~~---------------~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~~~ 214 (389)
T 3q2o_A 154 TTTGGYDGKGQVVLRSEAD---VDEARKLA---------------NAAECILEKWVP-FEKEVSVIVIRSVSGETKVFPV 214 (389)
T ss_dssp ESSCCSSSCCEEEESSGGG---HHHHHHHH---------------HHSCEEEEECCC-CSEEEEEEEEECTTCCEEECCC
T ss_pred eCCCCCCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEeccc-CceEEEEEEEEcCCCCEEEecC
Confidence 99983 2 55554443221 11222211 146799999998 358999999864 2211
Q ss_pred EEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeCC-CcEEEecCCcc
Q 002403 223 AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCDVNGWS 290 (927)
Q Consensus 223 Ae~RkSPv~dG~vrrN~~gke~r~~v~Lt~e----Ek~iA~k~~~afgq~-VcGfDlLRs~~-~syV~DVNGwS 290 (927)
.+.... +|.+ .+.-.|..|+++ -+++|.++++++|.. ++++|++.+.+ .+||+|||--.
T Consensus 215 ~e~~~~---~g~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~ 279 (389)
T 3q2o_A 215 AENIHV---NNIL------HESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYINELAPRP 279 (389)
T ss_dssp EEEEEE---TTEE------EEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSC
T ss_pred eeeEEc---CCce------EEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCC
Confidence 111111 2332 123345567764 467899999999996 99999999854 69999999653
No 41
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.20 E-value=7e-11 Score=127.57 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=124.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.||++++.|+.-..+..+.+..+..+.++.++.++..+++||....++|+++|||+|.+.
T Consensus 63 ~~D~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~-------------------- 122 (363)
T 4ffl_A 63 RVDAVLPVNENLACIEFLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR-------------------- 122 (363)
T ss_dssp SSSEEEECCCCHHHHHHHHHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS--------------------
T ss_pred CCCEEEECCCChhHHHHHHHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce--------------------
Confidence 589999887643223334444566677788999999999999999999999999998641
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvyt 215 (927)
.++.|+|+||..|. .|.|+. .+.|... .......++.||||. |..+-|.+
T Consensus 123 ------~ig~P~vvKp~~g~-----------g~~gv~----~v~~~~~-------~~~~~~~~~~ee~i~--g~e~sv~~ 172 (363)
T 4ffl_A 123 ------PSKPPYFVKPPCES-----------SSVGAR----IIYDDKD-------LEGLEPDTLVEEYVE--GEVVSLEV 172 (363)
T ss_dssp ------CSSSCEEEECSSCC-----------TTTTCE----EEC-------------CCCTTCEEEECCC--SEEEEEEE
T ss_pred ------ecCCCEEEEECCCC-----------CCcCeE----EeccHHH-------hhhhccchhhhhhcc--CcEEEEEE
Confidence 13479999999886 444543 2322211 122466789999996 66677766
Q ss_pred ECC--cee-EEEeecCCCCCCceeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEecCC
Q 002403 216 VGP--EYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (927)
Q Consensus 216 VG~--~~v-hAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~eEk~iA~k~~~afgq~-VcGfDlLRs~~~syV~DVNG 288 (927)
++. ..+ +...+. ...+..+...-.|..+.++-+++|.++++++|.. +++||++.+.+++||+|||-
T Consensus 173 ~~d~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~~~~~viEiN~ 242 (363)
T 4ffl_A 173 VGDGSHFAVVKETLV-------HIDETYDCHMVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGPKGLRVIEIDA 242 (363)
T ss_dssp EEESSCEEECCCEEE-------EECTTSCEEEEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEETTEEEEEEEEC
T ss_pred EEECCeEEEEEEEEe-------ccCCcccceeecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeCCeEEEEEEeC
Confidence 643 222 122221 1223344455567788999999999999999985 99999999999999999996
No 42
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.20 E-value=1.6e-11 Score=137.81 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=132.1
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++|+. ...|+ ..+.+.++..+..++ |+..+..+++||..+.++|+++|||+|++..+... .+..
T Consensus 83 ~id~vv~g--~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~---------~ea~ 151 (442)
T 3lp8_A 83 KIELVVIG--PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDT---------NSAY 151 (442)
T ss_dssp TCCEEEEC--SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSH---------HHHH
T ss_pred CCCEEEEC--CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCH---------HHHH
Confidence 35777762 23344 245667778887665 99999999999999999999999999999888651 0112
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 002403 134 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (927)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIK 212 (927)
+++. .++.|+|+||..|. ..++++-.... -....++.+-+. ..|. ..+..+|+||||+ |.++-
T Consensus 152 ~~~~----~~g~PvVvKp~~~~gg~GV~iv~~~e---el~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~s 215 (442)
T 3lp8_A 152 KFID----KHKLPLVVKADGLAQGKGTVICHTHE---EAYNAVDAMLVH-HKFG------EAGCAIIIEEFLE--GKEIS 215 (442)
T ss_dssp HHHH----HSCSSEEEEESSCCTTTSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEE
T ss_pred HHHH----HcCCcEEEeECCCCCCCeEEEeCCHH---HHHHHHHHHHhh-cccC------CCCCeEEEEEeec--CcEEE
Confidence 2222 24589999999875 22232222111 011122222100 0111 1235799999999 78888
Q ss_pred EEEE--CCceeE-EEee-cCCCCCCceeecCCCCceeeeee-CCHHHHHH--------HHHHHHHhCCc---eeEEEEEe
Q 002403 213 VYTV--GPEYAH-AEAR-KSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQM--------AREVCIAFRQA---VCGFDLLR 276 (927)
Q Consensus 213 vytV--G~~~vh-Ae~R-kSPv~dG~vrrN~~gke~r~~v~-Lt~eEk~i--------A~k~~~afgq~---VcGfDlLR 276 (927)
|.++ |..++. +..| .-++.+|+.--|+-|-+.-.|.. |+++..+- |.++.+++|.. ++.+|++.
T Consensus 216 v~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~ 295 (442)
T 3lp8_A 216 FFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIII 295 (442)
T ss_dssp EEEEEESSCEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred EEEEECCCeEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 7776 444432 2322 23334666666776666667776 88866543 45566888875 45599999
Q ss_pred eCCCcEEEecCCc
Q 002403 277 CEGRSYVCDVNGW 289 (927)
Q Consensus 277 s~~~syV~DVNGw 289 (927)
+.+++||+|||--
T Consensus 296 ~~~g~~viEiN~R 308 (442)
T 3lp8_A 296 KKNEPKLLEYNVR 308 (442)
T ss_dssp ETTEEEEEEEESS
T ss_pred eCCCeEEEEEecC
Confidence 9888999999953
No 43
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.19 E-value=7e-12 Score=139.74 Aligned_cols=207 Identities=13% Similarity=0.128 Sum_probs=123.8
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~ 133 (927)
.+|++++... .++ ..+.+.++..+..+ -|+..+..+++||....++|+++|||+|++..+... +
T Consensus 88 ~~d~V~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~ 153 (452)
T 2qk4_A 88 KIEFVVVGPE--APLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKP------------E 153 (452)
T ss_dssp TCCEEEECSS--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSH------------H
T ss_pred CCCEEEECCc--HHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------H
Confidence 3677887432 332 34456666677544 499999999999999999999999999999877641 1
Q ss_pred ceeeecCeeccCc-EEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 002403 134 DFVEVHGNRFWKP-FVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (927)
Q Consensus 134 d~i~v~g~~~~kP-fVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DI 211 (927)
+....- ..++.| +|+||..|. ..++++. .+.. -....++.+-+. +.|. ..+..+|+||||+ |.++
T Consensus 154 ~~~~~~-~~~g~P~vvvKp~~~~gg~Gv~~v--~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~ 220 (452)
T 2qk4_A 154 EACSFI-LSADFPALVVKASGLAAGKGVIVA--KSKE-EACKAVQEIMQE-KAFG------AAGETIVIEELLD--GEEV 220 (452)
T ss_dssp HHHHHH-HHCSSCEEEEEESBC---CCEEEC--SSHH-HHHHHHHHHTTC--------------CCEEEEECCC--SEEE
T ss_pred HHHHHH-HhCCCCeEEEEeCCCCCCCCEEEe--CCHH-HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CCeE
Confidence 211110 124579 999999885 1222221 1110 111122222110 0010 0246799999999 8899
Q ss_pred EEEEEC-Cc-eeE-EEeec-CCCCCCceeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC------CceeEEEEE
Q 002403 212 KVYTVG-PE-YAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR------QAVCGFDLL 275 (927)
Q Consensus 212 KvytVG-~~-~vh-Ae~Rk-SPv~dG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~k~~~afg------q~VcGfDlL 275 (927)
.|.+++ ++ +++ ...|. -.+.++...-|+.+-+.-.|.. |+++.. ++|.+++++++ ..+++||++
T Consensus 221 sv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~ 300 (452)
T 2qk4_A 221 SCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIM 300 (452)
T ss_dssp EEEEEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEE
Confidence 998884 33 332 22221 1123443333333333335665 787543 57778888873 358999999
Q ss_pred eeCCCcEEEecCCc
Q 002403 276 RCEGRSYVCDVNGW 289 (927)
Q Consensus 276 Rs~~~syV~DVNGw 289 (927)
.+.+|+||+|||.-
T Consensus 301 ~~~~g~~viEiN~R 314 (452)
T 2qk4_A 301 LTKNGPKVLEFNCR 314 (452)
T ss_dssp EETTEEEEEEEESS
T ss_pred EeCCCcEEEEEecc
Confidence 99777999999953
No 44
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.17 E-value=1.8e-10 Score=127.59 Aligned_cols=185 Identities=16% Similarity=0.210 Sum_probs=120.4
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002403 71 EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (927)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (927)
..++++++. +.++.++..+..+++||....++|+++|||+|++..+.... .++... -...++.|+|+|
T Consensus 99 ~~~l~~l~~-g~~v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------~~~~~~-~~~~~g~P~VvK 166 (403)
T 3k5i_A 99 TYALEEVAS-EVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENT----------PAELAK-VGEQLGYPLMLK 166 (403)
T ss_dssp HHHHHHHTT-TSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCC----------HHHHHH-HHHHHCSSEEEE
T ss_pred HHHHHHHHc-CCccCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCC----------HHHHHH-HHHHhCCCEEEE
Confidence 456677777 77789999999999999999999999999999999987311 112111 112355899999
Q ss_pred ecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeecC
Q 002403 151 PVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS 228 (927)
Q Consensus 151 pv~Ge--dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvytVG~~~vhAe~RkS 228 (927)
|..|. ..++++...... ....++.. .+..+|+||||+ .|..+.|.++++..- .+--
T Consensus 167 p~~gg~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~lvEe~i~-~~~E~sv~v~~~~~g---~~~~ 224 (403)
T 3k5i_A 167 SKTMAYDGRGNFRVNSQDD---IPEALEAL---------------KDRPLYAEKWAY-FKMELAVIVVKTKDE---VLSY 224 (403)
T ss_dssp ESSSCCTTTTEEEECSTTS---HHHHHHHT---------------TTSCEEEEECCC-EEEEEEEEEEECSSC---EEEC
T ss_pred eCCCCcCCCCEEEECCHHH---HHHHHHhc---------------CCCcEEEecCCC-CCeEEEEEEEEcCCC---EEEe
Confidence 98763 334443322211 12222211 256799999996 378999999875321 1222
Q ss_pred CCCCCceeecCCCCceeeeee-CCHHH----HHHHHHHHHHhCCc-eeEEEEEeeCC-CcEEEecCCcc
Q 002403 229 PVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCDVNGWS 290 (927)
Q Consensus 229 Pv~dG~vrrN~~gke~r~~v~-Lt~eE----k~iA~k~~~afgq~-VcGfDlLRs~~-~syV~DVNGwS 290 (927)
|+. ..+.++-.-.+.-.|.. |+++. +++|.++++++|.. +++||++.+.+ .+||+|||--.
T Consensus 225 p~~-~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~ 292 (403)
T 3k5i_A 225 PTV-ETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRI 292 (403)
T ss_dssp CCE-EEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSC
T ss_pred CCe-eeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCC
Confidence 321 11111111112234555 77754 47899999999985 89999998854 59999999543
No 45
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.17 E-value=2.5e-11 Score=135.68 Aligned_cols=205 Identities=15% Similarity=0.089 Sum_probs=130.8
Q ss_pred cCeeeccccCCCch-HHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 57 CDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
+|++|+. ...|+ ..+.+.++..+..++ ++..+..+++||..+.++|+++|||+|++..+.... +..+
T Consensus 68 id~vv~g--~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~---------ea~~ 136 (431)
T 3mjf_A 68 IGLTIVG--PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVE---------AALA 136 (431)
T ss_dssp EEEEEEC--SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHH---------HHHH
T ss_pred cCEEEEC--CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHH---------HHHH
Confidence 5666653 23344 345677777876665 999999999999999999999999999998886510 1122
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKv 213 (927)
++. .++.|+|+||..|. ..+|++..... -....++.+-.. ..|. ..+..+|+||||+ |.++.|
T Consensus 137 ~~~----~~g~PvVvKp~~~~gg~GV~iv~~~~---el~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv 200 (431)
T 3mjf_A 137 YVR----QKGAPIVIKADGLAAGKGVIVAMTQE---EAETAVNDMLAG-NAFG------DAGHRIVVEEFLD--GEEASF 200 (431)
T ss_dssp HHH----HHCSSEEEEESSSCTTCSEEEECSHH---HHHHHHHHHHTT-HHHH------CCCCCEEEEECCC--SEEEEE
T ss_pred HHH----HcCCeEEEEECCCCCCCcEEEeCCHH---HHHHHHHHHHhh-cccc------CCCCeEEEEEeeC--CcEEEE
Confidence 222 24589999999875 22222222110 011122211100 0010 1245799999999 788888
Q ss_pred EEE--CCceeEE-E-eecCCCCCCceeecCCCCceeeeee-CCHHHHHHHH--------HHHHHhCCce---eEEEEEee
Q 002403 214 YTV--GPEYAHA-E-ARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQMAR--------EVCIAFRQAV---CGFDLLRC 277 (927)
Q Consensus 214 ytV--G~~~vhA-e-~RkSPv~dG~vrrN~~gke~r~~v~-Lt~eEk~iA~--------k~~~afgq~V---cGfDlLRs 277 (927)
.++ |..++.. . .+..++.+|+..-|+-|-+.-.|.. |+++..+-+. ++.+++|... +.+|++.+
T Consensus 201 ~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~ 280 (431)
T 3mjf_A 201 IVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMIS 280 (431)
T ss_dssp EEEEESSCEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEC
T ss_pred EEEEcCCEEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEe
Confidence 777 4344331 1 1223345777667777777777887 8987765544 4457778754 55999999
Q ss_pred CCC-cEEEecCC
Q 002403 278 EGR-SYVCDVNG 288 (927)
Q Consensus 278 ~~~-syV~DVNG 288 (927)
.+| +||+|+|-
T Consensus 281 ~~g~~~viEiN~ 292 (431)
T 3mjf_A 281 ADGQPKVIEFNC 292 (431)
T ss_dssp TTSCEEEEEECG
T ss_pred CCCCeEEEEEec
Confidence 777 99999994
No 46
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.16 E-value=2.5e-10 Score=127.43 Aligned_cols=189 Identities=13% Similarity=0.181 Sum_probs=124.7
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.||++++-| ...+ ..++++++.. .++.++..+..+++||....++|+++|||+|++..+... ++.
T Consensus 96 ~~D~V~~~~-e~~~-~~~~~~l~~~-~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~------------~e~ 160 (419)
T 4e4t_A 96 LCEAVSTEF-ENVP-AASLDFLART-TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESA------------AAL 160 (419)
T ss_dssp HCSEEEECC-TTCC-HHHHHHHHTT-SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSH------------HHH
T ss_pred cCCEEEEcc-CcCC-HHHHHHHHcc-CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCH------------HHH
Confidence 588888433 2333 4566777776 689999999999999999999999999999999988751 222
Q ss_pred eeecCee----ccCcEEEeec-cccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 002403 136 VEVHGNR----FWKPFVEKPV-HGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (927)
Q Consensus 136 i~v~g~~----~~kPfVeKpv-~Ged-Hni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~ 209 (927)
.... .. + .|+|+||. .|.+ .++++...... ....++.. .++.+|+||||+- +.
T Consensus 161 ~~~~-~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~e---l~~a~~~~---------------~~~~~lvEe~i~~-~~ 219 (419)
T 4e4t_A 161 AALD-DAALDAV-LPGILKTARLGYDGKGQVRVSTARE---ARDAHAAL---------------GGVPCVLEKRLPL-KY 219 (419)
T ss_dssp HTSC-HHHHHTT-CSEEEEESSSCCTTTTEEEECSHHH---HHHHHHHT---------------TTCCEEEEECCCE-EE
T ss_pred HHHH-Hhhcccc-CCEEEEecCCCCCCCceEEECCHHH---HHHHHHhc---------------CCCcEEEeecCCC-Ce
Confidence 2211 12 5 79999999 6652 33333322110 11112111 2577999999986 67
Q ss_pred eeEEEEECC---ceeE---EEeecCCCCCCceeecCCCCceeeeee-CCH----HHHHHHHHHHHHhCCc-eeEEEEEee
Q 002403 210 DVKVYTVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRC 277 (927)
Q Consensus 210 DIKvytVG~---~~vh---Ae~RkSPv~dG~vrrN~~gke~r~~v~-Lt~----eEk~iA~k~~~afgq~-VcGfDlLRs 277 (927)
.+-|.+++. +++. .+.+.. +|.+. +.-.|.. |++ +-+++|.++++++|.. +++||++.+
T Consensus 220 Eisv~v~~~~~G~~~~~~~~e~~~~---~g~~~------~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~ 290 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPLAQNVHH---NGILA------LTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVL 290 (419)
T ss_dssp EEEEEEEECTTSCEEECCCEEEEEE---TTEEE------EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEeCeEEEee---CCeEE------EEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEe
Confidence 899988853 2221 111111 22221 1123555 775 4467899999999986 999999998
Q ss_pred CC-CcEEEecCCc
Q 002403 278 EG-RSYVCDVNGW 289 (927)
Q Consensus 278 ~~-~syV~DVNGw 289 (927)
.+ .+||+|||--
T Consensus 291 ~dG~~~v~EiNpR 303 (419)
T 4e4t_A 291 EDGSFVANEMAPR 303 (419)
T ss_dssp TTCCEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 65 4999999954
No 47
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.16 E-value=2.4e-10 Score=125.64 Aligned_cols=189 Identities=12% Similarity=0.121 Sum_probs=128.0
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.||++++-|. ..|. .++++++..+ ++.++..+..+++||...-++|+++|||+|++..+... ++.
T Consensus 42 ~~d~it~e~e-~v~~-~~l~~l~~~~-~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~------------~e~ 106 (355)
T 3eth_A 42 QQSVITAEIE-RWPE-TALTRQLARH-PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAER------------SEW 106 (355)
T ss_dssp TTSEEEESCS-CCCC-CHHHHHHHTC-TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCG------------GGH
T ss_pred cCCEEEECcC-CcCH-HHHHHHHhcC-CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCH------------HHH
Confidence 8999988775 3443 4677787877 88999999999999999999999999999999988752 222
Q ss_pred eeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 002403 136 VEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~DIKvy 214 (927)
... ...++.|+|+||..| . .|.|+. +.+. .+. .++... .+ + .+|+||||+- |..|-|.
T Consensus 107 ~~~-~~~~G~P~VvKp~~~G~-----------~GkGv~-~v~~-~~~-~el~~a--~~--~-~vivEe~I~~-~~Eisv~ 165 (355)
T 3eth_A 107 PAV-FDRLGELAIVKRRTGGY-----------DGRGQW-RLRA-NET-EQLPAE--CY--G-ECIVEQGINF-SGEVSLV 165 (355)
T ss_dssp HHH-HHHHCSEEEEEESSSCC-----------TTTTEE-EEET-TCG-GGSCGG--GT--T-TEEEEECCCC-SEEEEEE
T ss_pred HHH-HHHcCCCEEEEecCCCC-----------CCCeEE-EEcC-CCH-HHHHHH--hh--C-CEEEEEccCC-CcEEEEE
Confidence 221 123568999999985 6 344543 2222 001 111111 11 1 6999999984 6788888
Q ss_pred EECC---ceeE---EEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 002403 215 TVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (927)
Q Consensus 215 tVG~---~~vh---Ae~RkSPv~dG~vrrN~~gke~r~~v~Lt~e----Ek~iA~k~~~afgq-~VcGfDlLRs~~~syV 283 (927)
+++. ++++ ++..+. +|.+. +...|..|+++ -+++|.++++++|. .+++||++.+.+++||
T Consensus 166 v~~~~~G~~~~~p~~e~~~~---~g~~~------~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~~~~~v 236 (355)
T 3eth_A 166 GARGFDGSTVFYPLTHNLHQ---DGILR------TSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQGLLI 236 (355)
T ss_dssp EEECTTSCEEECCCEEEEEE---TTEEE------EEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEE
T ss_pred EEEcCCCCEEEECCEEEEee---CCeEE------EEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEE
Confidence 8842 2221 111111 23321 12235567765 36788999999987 4999999999889999
Q ss_pred EecCCc
Q 002403 284 CDVNGW 289 (927)
Q Consensus 284 ~DVNGw 289 (927)
+|||-=
T Consensus 237 ~EinpR 242 (355)
T 3eth_A 237 NELAPR 242 (355)
T ss_dssp EEEESS
T ss_pred EEeeCC
Confidence 999954
No 48
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.15 E-value=2.9e-11 Score=134.30 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=126.0
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e 131 (927)
.+|++++.++. ++. ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++. .+..
T Consensus 74 ~~d~v~~~~g~-~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~------------ 140 (449)
T 2w70_A 74 GAVAIHPGYGF-LSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGD------------ 140 (449)
T ss_dssp TCCEEECCSST-TTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCS------------
T ss_pred CCCEEEECCCC-cccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCC------------
Confidence 57999987642 121 233456666775 456899999999999999999999999999986 4432
Q ss_pred ccce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeec
Q 002403 132 EEDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 203 (927)
Q Consensus 132 ~~d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEF 203 (927)
.++. ...- ..++.|+|+||..|. .|.|+. + +.+.. ++..-+.... .++.+|+|||
T Consensus 141 ~~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~ 203 (449)
T 2w70_A 141 DMDKNRAIA-KRIGYPVIIKASGGG-----------GGRGMR-V---VRGDA-ELAQSISMTRAEAKAAFSNDMVYMEKY 203 (449)
T ss_dssp CHHHHHHHH-HHHCSSEEEEETTCC-----------TTTTCE-E---ECSHH-HHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHH-HHhCCcEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 1222 1111 124579999999986 343442 1 21111 1110000110 1568999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhCCc-eeEEEE
Q 002403 204 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (927)
Q Consensus 204 i~~~G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-Lt~e----Ek~iA~k~~~afgq~-VcGfDl 274 (927)
|+- +.++.|.+++ +++++...|..+ +.++-..-....|.. |+++ -+++|.++++++|.. +++||+
T Consensus 204 i~g-~~e~~v~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 277 (449)
T 2w70_A 204 LEN-PRHVEIQVLADGQGNAIYLAERDCS-----MQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEF 277 (449)
T ss_dssp CSS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cCC-CeEEEEEEEEcCCCCEEEEeceecc-----cccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 974 4788888876 456776666432 111100001112443 6653 467899999999975 789999
Q ss_pred EeeCCCcEEEecCCc
Q 002403 275 LRCEGRSYVCDVNGW 289 (927)
Q Consensus 275 LRs~~~syV~DVNGw 289 (927)
+.+.+++||+|||.-
T Consensus 278 ~~~~~~~~viEiN~R 292 (449)
T 2w70_A 278 LFENGEFYFIEMNTR 292 (449)
T ss_dssp EEETTEEEEEEEECS
T ss_pred EEECCCEEEEEEECC
Confidence 999888999999964
No 49
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.15 E-value=4.5e-10 Score=123.05 Aligned_cols=190 Identities=14% Similarity=0.225 Sum_probs=123.3
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.||++++-| ...+. .++++++... .+.++..+..+++||....++|+++|||+|++..+... ++.
T Consensus 73 ~~dvi~~~~-E~~~~-~~l~~l~~~~-~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~ 137 (377)
T 3orq_A 73 KCDVITYEF-ENISA-QQLKLLCEKY-NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKES------------TDI 137 (377)
T ss_dssp HCSEEEESS-TTSCH-HHHHHHHHHS-CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSS------------THH
T ss_pred hCCcceecc-cccCH-HHHHHHhhhc-CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHH
Confidence 378764433 44444 3455565554 45589999999999999999999999999999988752 221
Q ss_pred eeecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC-ceeE
Q 002403 136 VEVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG-TDVK 212 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G-~DIK 212 (927)
... ...++.|+|+||..|. .+++++...... ....++.. .++.+|+||||+ | ..+.
T Consensus 138 ~~~-~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~i~--g~~E~s 196 (377)
T 3orq_A 138 DKA-IETLGYPFIVKTRFGGYDGKGQVLINNEKD---LQEGFKLI---------------ETSECVAEKYLN--IKKEVS 196 (377)
T ss_dssp HHH-HHHTCSSEEEEESSSCCTTTTEEEECSTTS---HHHHHHHH---------------TTSCEEEEECCC--EEEEEE
T ss_pred HHH-HHHcCCCEEEEeCCCCCCCCCeEEECCHHH---HHHHHHhc---------------CCCcEEEEccCC--CCEEEE
Confidence 111 1234589999999873 233333222111 11122221 237799999998 5 7899
Q ss_pred EEEE-CC--ceeE---EEeecCCCCCCceeecCCCCceeeeeeCCH--HHHHHHHHHHHHhCCc-eeEEEEEee-CCCcE
Q 002403 213 VYTV-GP--EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVLLTP--NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (927)
Q Consensus 213 vytV-G~--~~vh---Ae~RkSPv~dG~vrrN~~gke~r~~v~Lt~--eEk~iA~k~~~afgq~-VcGfDlLRs-~~~sy 282 (927)
|.++ +. ++.. .+.... +|.+ .+.-.|..+++ +-+++|.++++++|.. +++||++.+ .|++|
T Consensus 197 v~~~~~~~g~~~~~~~~e~~~~---~g~~------~~~~~Pa~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~ 267 (377)
T 3orq_A 197 LTVTRGNNNQITFFPLQENEHR---NQIL------FKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLY 267 (377)
T ss_dssp EEEEECGGGCEEECCCEEEEEE---TTEE------EEEEESCSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCEE
T ss_pred EEEEEeCCCCEEEECCEeEEEE---CCEE------EEEECCCCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEE
Confidence 9998 42 2221 111111 2332 12233445554 6678999999999997 999999998 56799
Q ss_pred EEecCCcc
Q 002403 283 VCDVNGWS 290 (927)
Q Consensus 283 V~DVNGwS 290 (927)
|+|||--.
T Consensus 268 v~EinpR~ 275 (377)
T 3orq_A 268 VNEIAPRP 275 (377)
T ss_dssp EEEEESSC
T ss_pred EEEeeCCc
Confidence 99999654
No 50
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.12 E-value=9.2e-11 Score=130.57 Aligned_cols=199 Identities=17% Similarity=0.243 Sum_probs=125.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e~ 132 (927)
.+|++++-|+.-.-.....+.++..+..+ -|+.++..+++||....++|+++|||+|++. .+.. .
T Consensus 78 ~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~------------~ 145 (446)
T 3ouz_A 78 EADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAG------------A 145 (446)
T ss_dssp TCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCS------------H
T ss_pred CcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCC------------H
Confidence 48899987642211134456666777554 4999999999999999999999999999986 3332 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeeccC
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEFi~ 205 (927)
++.... -..++.|+|+||..|. .|.|+. +++ +... +..-....+ .++.+|+||||+
T Consensus 146 ~e~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~e-l~~~~~~~~~~~~~~~~~~~~lvEe~i~ 208 (446)
T 3ouz_A 146 EAAKKL-AKEIGYPVILKAAAGG-----------GGRGMR-VVE---NEKD-LEKAYWSAESEAMTAFGDGTMYMEKYIQ 208 (446)
T ss_dssp HHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-EEC---SGGG-HHHHHHHHHHHHHHHHSCCCEEEEECCS
T ss_pred HHHHHH-HHHhCCCEEEEECCCC-----------CCCCEE-EEC---CHHH-HHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 222211 1234689999999986 344442 222 1111 110000111 167899999998
Q ss_pred CCCceeEEEEECC---ceeEEEeecCCCCCCceee-cCCCCceeeee-eCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 002403 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMR-NPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (927)
Q Consensus 206 ~~G~DIKvytVG~---~~vhAe~RkSPv~dG~vrr-N~~gke~r~~v-~Lt~e----Ek~iA~k~~~afgq-~VcGfDlL 275 (927)
- +.++.|.+++. .+++.-.|... +.+ +....+ ..|. .|+++ -.++|.++++++|. .+++||++
T Consensus 209 g-~~e~~v~v~~d~~g~~~~~~~~~~~-----~~~~~~~~~~-~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~ 281 (446)
T 3ouz_A 209 N-PRHIEVQVIGDSFGNVIHVGERDCS-----MQRRHQKLIE-ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFL 281 (446)
T ss_dssp S-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEE-EESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred C-CcEEEEEEEEcCCCCEEEEeeceee-----eeecCceEEE-ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 5 36888888853 45665555321 211 111111 1233 46654 44689999999997 56789999
Q ss_pred eeC-CCcEEEecCCcc
Q 002403 276 RCE-GRSYVCDVNGWS 290 (927)
Q Consensus 276 Rs~-~~syV~DVNGwS 290 (927)
.+. |++||+|||--.
T Consensus 282 ~~~~g~~~~iEiNpR~ 297 (446)
T 3ouz_A 282 VDKNLDFYFIEMNTRL 297 (446)
T ss_dssp ECTTCCEEEEEEESSC
T ss_pred EeCCCCEEEEEeECCC
Confidence 987 479999999643
No 51
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.12 E-value=6.8e-11 Score=131.43 Aligned_cols=197 Identities=17% Similarity=0.268 Sum_probs=124.2
Q ss_pred CcCeeeccccCCCch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e 131 (927)
.+|++++.++. ++. ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++. .+..
T Consensus 73 ~~d~v~~~~g~-~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~------------ 139 (451)
T 1ulz_A 73 GADAIHPGYGF-LAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKS------------ 139 (451)
T ss_dssp TCCEEECCSST-TTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCC------------
T ss_pred CCCEEEECCCc-cccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCC------------
Confidence 57889887642 111 133455666775 456899999999999999999999999999986 4432
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeecc
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEFi 204 (927)
.++....- ..++.|+|+||..|. .|.|+. +++ +.. ++..-+.... .++.+|+||||
T Consensus 140 ~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i 202 (451)
T 1ulz_A 140 LEEAKALA-REIGYPVLLKATAGG-----------GGRGIR-ICR---NEE-ELVKNYEQASREAEKAFGRGDLLLEKFI 202 (451)
T ss_dssp HHHHHHHH-HHHCSSEEEEECSSS-----------SCCSCE-EES---SHH-HHHHHHHHHHHHHHHTTSCCCEEEEECC
T ss_pred HHHHHHHH-HHcCCCEEEEECCCC-----------CCccEE-EeC---CHH-HHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 12222111 124589999999986 344442 121 110 0100000000 15689999999
Q ss_pred CCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCC-ceeeeee-CCHH----HHHHHHHHHHHhCCc-eeEEEE
Q 002403 205 PTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (927)
Q Consensus 205 ~~~G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gk-e~r~~v~-Lt~e----Ek~iA~k~~~afgq~-VcGfDl 274 (927)
+- ++++.|.+++ +++++...|..+ +.++ |.+ ....|.. |+++ -+++|.++++++|.. +++||+
T Consensus 203 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~-~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 275 (451)
T 1ulz_A 203 EN-PKHIEYQVLGDKHGNVIHLGERDCS-----IQRR-NQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEF 275 (451)
T ss_dssp CS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cC-CeEEEEEEEEcCCCCEEEEeeeecc-----cccc-cccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 74 4788888886 356666655432 1222 111 1112443 6653 467899999999976 788999
Q ss_pred EeeCC-CcEEEecCCc
Q 002403 275 LRCEG-RSYVCDVNGW 289 (927)
Q Consensus 275 LRs~~-~syV~DVNGw 289 (927)
+.+.+ .+||+|||.-
T Consensus 276 ~~~~~g~~~viEiN~R 291 (451)
T 1ulz_A 276 IADQEGNLYFIEMNTR 291 (451)
T ss_dssp EECTTCCEEEEEEECS
T ss_pred EEeCCCCEEEEEeeCC
Confidence 99854 5999999964
No 52
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.10 E-value=9.1e-11 Score=123.69 Aligned_cols=190 Identities=14% Similarity=0.060 Sum_probs=108.6
Q ss_pred cCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 002403 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (927)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (927)
+|++++.. ...++ .+++.++..+.+.+|+..+..+++||....++|+++|||+|++ +.. .++
T Consensus 63 ~d~i~~~~-e~~~~-~~~~~le~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~------------~~~-- 124 (334)
T 2r85_A 63 NAVVVPTG-SFVAH-LGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEV--YED------------PDD-- 124 (334)
T ss_dssp TEEECCCT-THHHH-HCHHHHHTCCSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CSC------------GGG--
T ss_pred CCEEEECc-chhhh-hHHHHHHHcCCCccCCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cCC------------hHH--
Confidence 36665432 21222 2334456777667899999999999999999999999999999 322 111
Q ss_pred eecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce-----
Q 002403 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD----- 210 (927)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~D----- 210 (927)
+..|+|+||..|. -.+|++..... -....++.+.... .| .....+|+||||+-.--+
T Consensus 125 ------l~~P~vvKP~~g~~s~Gv~~v~~~~---el~~~~~~~~~~~-~~-------~~~~~~lvee~i~G~e~~~~~~~ 187 (334)
T 2r85_A 125 ------IEKPVIVKPHGAKGGKGYFLAKDPE---DFWRKAEKFLGIK-RK-------EDLKNIQIQEYVLGVPVYPHYFY 187 (334)
T ss_dssp ------CCSCEEEEECC----TTCEEESSHH---HHHHHHHHHHCCC-SG-------GGCCSEEEEECCCCEEEEEEEEE
T ss_pred ------cCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhhc-cc-------CCCCcEEEEeccCCceeEEEEee
Confidence 2379999999985 12222222110 1111222111000 00 123679999999852112
Q ss_pred ------eEEEEECCceeEEEeecCCCCCCcee--------ecCCCCceee---eeeCC----HHHHHHHHHHHHHhC---
Q 002403 211 ------VKVYTVGPEYAHAEARKSPVVDGVVM--------RNPDGKEVRY---PVLLT----PNEKQMAREVCIAFR--- 266 (927)
Q Consensus 211 ------IKvytVG~~~vhAe~RkSPv~dG~vr--------rN~~gke~r~---~v~Lt----~eEk~iA~k~~~afg--- 266 (927)
+.++++++++... .+|.++ .|........ |..|+ ++-+++|.++++++|
T Consensus 188 ~~~~~~v~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~ 260 (334)
T 2r85_A 188 SKVREELELMSIDRRYESN-------VDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELM 260 (334)
T ss_dssp ETTTTEEEEEEEEEEEEEE-------GGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred cCcCceeeeeeeccEEEec-------cCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333332211 012111 0100001111 56666 677889999999995
Q ss_pred ---CceeEEEEEeeC-CCcEEEecCC
Q 002403 267 ---QAVCGFDLLRCE-GRSYVCDVNG 288 (927)
Q Consensus 267 ---q~VcGfDlLRs~-~~syV~DVNG 288 (927)
..++++|++.+. |++||+|||.
T Consensus 261 ~~~~G~~~vd~~~~~~g~~~viEiN~ 286 (334)
T 2r85_A 261 GGLWGPFCLEGVFTPDLEFVVFEISA 286 (334)
T ss_dssp SCCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred ccccccEEEEEEECCCCCEEEEEEeC
Confidence 668999999884 6799999994
No 53
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.08 E-value=1.1e-10 Score=129.67 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=124.6
Q ss_pred CCcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 002403 55 PICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (927)
Q Consensus 55 P~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e 131 (927)
-.+|++++.|+.-.-...+.+.++..+. +.-++..+..+++||..+.++|+++|||+|++. .+..
T Consensus 72 ~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~------------ 139 (451)
T 2vpq_A 72 TGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKD------------ 139 (451)
T ss_dssp TTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSC------------
T ss_pred cCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCC------------
Confidence 3689999986521101234556666775 456689999999999999999999999999865 4432
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeecc
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEFi 204 (927)
.++....- ..++.|+|+||..|. .|.|+. +++ +.. ++..-+.... .++.+|+||||
T Consensus 140 ~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i 202 (451)
T 2vpq_A 140 VSEAKKIA-KKIGYPVIIKATAGG-----------GGKGIR-VAR---DEK-ELETGFRMTEQEAQTAFGNGGLYMEKFI 202 (451)
T ss_dssp HHHHHHHH-HHHCSSEEEEETTCC-----------TTCSEE-EES---SHH-HHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHH-HhcCCcEEEEECCCC-----------CCCCEE-EeC---CHH-HHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 12222111 124589999999986 333442 111 110 1110000000 25789999999
Q ss_pred CCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCC-ceeeeee-CCHH----HHHHHHHHHHHhCCc-eeEEEE
Q 002403 205 PTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (927)
Q Consensus 205 ~~~G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gk-e~r~~v~-Lt~e----Ek~iA~k~~~afgq~-VcGfDl 274 (927)
+- +.++.|-+++ +++++...|..+ +.++ |++ ....|.. |+++ -+++|.++++++|.. ++++|+
T Consensus 203 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~-~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 275 (451)
T 2vpq_A 203 EN-FRHIEIQIVGDSYGNVIHLGERDCT-----IQRR-MQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEF 275 (451)
T ss_dssp CS-EEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CC-CeEEEEEEEEcCCCCEEEEeccccc-----hhcc-ccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Confidence 74 3688887775 356665555332 1122 111 1112444 7764 467899999999976 678999
Q ss_pred Eee-C-CCcEEEecCCcc
Q 002403 275 LRC-E-GRSYVCDVNGWS 290 (927)
Q Consensus 275 LRs-~-~~syV~DVNGwS 290 (927)
+.+ . |++||+|||.-.
T Consensus 276 ~~~~~~g~~~viEiN~R~ 293 (451)
T 2vpq_A 276 IYDLNDNKFYFMEMNTRI 293 (451)
T ss_dssp EEETTTTEEEEEEEECSC
T ss_pred EEECCCCCEEEEEeeCCC
Confidence 998 5 459999999643
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.05 E-value=1.6e-10 Score=128.92 Aligned_cols=198 Identities=20% Similarity=0.233 Sum_probs=125.4
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~ 130 (927)
.+|++++.+ ||.. ..+.+.++..+. +.-|+..+..+++||....++|+++|||+|++. .+..
T Consensus 79 ~id~v~~~~--g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------- 145 (461)
T 2dzd_A 79 DVDAIHPGY--GFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDG----------- 145 (461)
T ss_dssp TCCEEECCS--SSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSS-----------
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCC-----------
Confidence 478899876 3321 133455666674 566999999999999999999999999999986 3432
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeec
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 203 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEF 203 (927)
.++....- ..++.|+|+||..|. .|.|+. +++ +.. ++..-+.... .++.+|+|||
T Consensus 146 -~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~v~---~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~ 207 (461)
T 2dzd_A 146 -LEDVVAFA-EAHGYPIIIKAALGG-----------GGRGMR-IVR---SKS-EVKEAFERAKSEAKAAFGSDEVYVEKL 207 (461)
T ss_dssp -HHHHHHHH-HHHCSCEEEEESTTC-----------SSSSEE-EEC---CGG-GHHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred -HHHHHHHH-HhcCCcEEEEeCCCC-----------CCCCEE-EeC---CHH-HHHHHHHHHHHHHHhhcCCCcEEEEEC
Confidence 12222111 124589999999986 344442 221 111 1110000000 1467999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeee-eCCH----HHHHHHHHHHHHhCCce-eEEEE
Q 002403 204 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAV-CGFDL 274 (927)
Q Consensus 204 i~~~G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v-~Lt~----eEk~iA~k~~~afgq~V-cGfDl 274 (927)
|+- ++++.|-+++ +.+++...|..+ ..+++..-.+. .|. .|++ +-+++|.++++++|..- +++|+
T Consensus 208 i~g-~~e~~v~v~~~~~G~~~~~~~~~~~----~~~~~~~~~~~-~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~ 281 (461)
T 2dzd_A 208 IEN-PKHIEVQILGDYEGNIVHLYERDCS----VQRRHQKVVEV-APSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEF 281 (461)
T ss_dssp CCS-CEEEEEEEEECTTCCEEEEEEEEEE----EEETTEEEEEE-ESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCC-CeEEEEEEEEcCCCCEEEEEecccc----ccccccceEEE-CCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 974 4778887775 346776666432 12222111111 233 4665 35679999999999875 45999
Q ss_pred EeeCCCcEEEecCCcc
Q 002403 275 LRCEGRSYVCDVNGWS 290 (927)
Q Consensus 275 LRs~~~syV~DVNGwS 290 (927)
+.+.+++||+|||--.
T Consensus 282 ~~~~~~~~viEiN~R~ 297 (461)
T 2dzd_A 282 LVSGDEFYFIEVNPRI 297 (461)
T ss_dssp EEETTEEEEEEEESSC
T ss_pred EEeCCCEEEEEEECCC
Confidence 9998889999999743
No 55
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.03 E-value=7.1e-10 Score=131.32 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=101.7
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e~ 132 (927)
.||++++-|+--.--....+.++..+...+ ++.++..++.||..+.++|+++|||+|++. .+.. .
T Consensus 74 ~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s------------~ 141 (681)
T 3n6r_A 74 GAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIED------------A 141 (681)
T ss_dssp CCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC--------------------
T ss_pred CcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCC------------H
Confidence 478888876321111244556667775554 999999999999999999999999999975 2322 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeeccC
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEFi~ 205 (927)
++.... -..+++|+|+||..|. .|.|+ ++.+....-...+. ..+ .++.+++||||+
T Consensus 142 ~e~~~~-a~~igyPvVvKp~~gg-----------ggkGv-~iv~~~~el~~a~~----~~~~ea~~~fg~~~vlvEe~I~ 204 (681)
T 3n6r_A 142 DEAVKI-SNQIGYPVMIKASAGG-----------GGKGM-RIAWNDQEAREGFQ----SSKNEAANSFGDDRIFIEKFVT 204 (681)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred HHHHHH-HHhcCCcEEEEECCCC-----------CCCCE-EEECCHHHHHHHHH----HHHHHHHHhCCCCcEEEEeccC
Confidence 222221 1235689999999987 45565 35544332222222 111 156899999998
Q ss_pred CCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCHHHH----HHHHHHHHHhCCc-eeEEEEEe
Q 002403 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK----QMAREVCIAFRQA-VCGFDLLR 276 (927)
Q Consensus 206 ~~G~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-Lt~eEk----~iA~k~~~afgq~-VcGfDlLR 276 (927)
. ++++-|-+++. ++++...|... ..+++....+. .|.. |+++.+ ++|.++++++|.. ++.||++.
T Consensus 205 g-~rei~V~v~~d~~G~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~ 278 (681)
T 3n6r_A 205 Q-PRHIEIQVLCDSHGNGIYLGERECS----IQRRNQKVVEE-APSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIV 278 (681)
T ss_dssp S-CEEEEEEEECCSSSCCEEEEEEECC----CEETTEECEEE-ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEE
T ss_pred C-CcEEEEEEEEeCCCCEEEEeeeecc----eeccCccEEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 6 37888888874 66777777642 22333222222 2443 787655 7899999999985 77899999
Q ss_pred eCCC-cEEEecCCcc
Q 002403 277 CEGR-SYVCDVNGWS 290 (927)
Q Consensus 277 s~~~-syV~DVNGwS 290 (927)
+.+| +|++|||---
T Consensus 279 d~dg~~~~lEiNpR~ 293 (681)
T 3n6r_A 279 DGQKNFYFLEMNTRL 293 (681)
T ss_dssp CTTSCCCCCEEECSC
T ss_pred eCCCCEEEEeccccc
Confidence 8654 9999999643
No 56
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.98 E-value=1.4e-09 Score=123.59 Aligned_cols=206 Identities=13% Similarity=0.134 Sum_probs=121.7
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (927)
.+|+++++ +.. .+..+.+.++..+.. -++..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 102 ~id~Vip~-sE~-~l~~~a~~~e~~Gi~-g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~------------ee~ 166 (474)
T 3vmm_A 102 GADAITTN-NEL-FIAPMAKACERLGLR-GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTL------------EDF 166 (474)
T ss_dssp TCSEEEES-CGG-GHHHHHHHHHHTTCC-CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSH------------HHH
T ss_pred CCCEEEEC-Ccc-cHHHHHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH------------HHH
Confidence 36788873 333 233344555566665 899999999999999999999999999999887651 222
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC------
Q 002403 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG------ 208 (927)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G------ 208 (927)
... -..++.|+|+||..|. ..++.+-..... ....++...+....+.. ...+..+..+|+||||+-.-
T Consensus 167 ~~~-~~~lg~PvVVKP~~g~gg~Gv~iv~~~ee---l~~a~~~~~~~~~~~~~-~~a~~~~~~vlVEe~I~G~e~~~~q~ 241 (474)
T 3vmm_A 167 RAA-LEEIGTPLILKPTYLASSIGVTLITDTET---AEDEFNRVNDYLKSINV-PKAVTFEAPFIAEEFLQGEYGDWYQT 241 (474)
T ss_dssp HHH-HHHSCSSEEEEESSCCTTTTCEEECCTTS---HHHHHHHHHHHHTTSCC-CTTCCCSCSEEEEECCCBCHHHHCSS
T ss_pred HHH-HHHcCCCEEEEECCCCcCceEEEECCHHH---HHHHHHHHHHHHhhccc-cccccCCCeEEEEeCCCCceeeeeec
Confidence 211 1234689999999985 112221111100 11111111000000000 00012357899999998421
Q ss_pred ------ceeEEEEECCcee--EEEeecCCCCCCceeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCceeE--EEE
Q 002403 209 ------TDVKVYTVGPEYA--HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQAVCG--FDL 274 (927)
Q Consensus 209 ------~DIKvytVG~~~v--hAe~RkSPv~dG~vrrN~~gke~r~~v~Lt~e----Ek~iA~k~~~afgq~VcG--fDl 274 (927)
-.|.+++.+++.. +...|.. .+.+ .......|..|+++ -.++|.++++++|..-+| ||+
T Consensus 242 ~~~~~e~sv~~v~~dg~~~~v~i~~~~~---~~~~----~~~~~~~Pa~l~~~~~~~l~~~a~~~~~alG~~g~~~~vef 314 (474)
T 3vmm_A 242 EGYSDYISIEGIMADGEYFPIAIHDKTP---QIGF----TETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEI 314 (474)
T ss_dssp SSSCSEEEEEEEEETTEEEEEEEEEECC---CBTT----BCCEEEESCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred ccccceeEEEEEEECCeEEEEEEEeecc---CCCc----cceEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Confidence 2466677777643 2223322 1111 11122345567774 556889999999998777 899
Q ss_pred EeeCCC-cEEEecCC
Q 002403 275 LRCEGR-SYVCDVNG 288 (927)
Q Consensus 275 LRs~~~-syV~DVNG 288 (927)
+.+.+| +||+|||-
T Consensus 315 ~~~~dg~~~~iEvNp 329 (474)
T 3vmm_A 315 KLMKNREPGLIESAA 329 (474)
T ss_dssp EEEGGGEEEEEEEES
T ss_pred EEcCCCCEEEEEEeC
Confidence 987554 99999993
No 57
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.95 E-value=5e-10 Score=129.38 Aligned_cols=212 Identities=14% Similarity=0.098 Sum_probs=120.8
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEE--E--eccC--CC----c
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--V--NREV--PY----Q 124 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~--~--~r~~--p~----~ 124 (927)
.+|++++-|+.-.--....+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. + ...+ +. .
T Consensus 123 ~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~ 202 (540)
T 3glk_A 123 PVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRI 202 (540)
T ss_dssp TCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CC
T ss_pred CCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCccccccccccccccccccccc
Confidence 478888765421111133445557776655 9999999999999999999999999999764 0 0000 00 0
Q ss_pred cc--c----c-cccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---cc
Q 002403 125 EL--D----Y-FIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RR 194 (927)
Q Consensus 125 ~~--~----~-~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~---r~ 194 (927)
.. . . ..+.++.... -..++.|+|+||..|. .|.|+ +.+.+... +..-.... ..
T Consensus 203 ~~~~~~~~~~~v~s~~ea~~~-a~~igyPvVVKp~~gg-----------GG~Gv----~iv~~~~e-L~~a~~~~~~~~~ 265 (540)
T 3glk_A 203 SVPEDVYDKGCVKDVDEGLEA-AERIGFPLMIKASEGG-----------GGKGI----RKAESAED-FPILFRQVQSEIP 265 (540)
T ss_dssp CCCHHHHHHTSCCSHHHHHHH-HHHHCSSEEEEETTCC---------------E----EEECSTTT-HHHHHHHHHHHST
T ss_pred ccccccccccCcCCHHHHHHH-HHhcCCcEEEEECCCC-----------CCCCE----EEECCHHH-HHHHHHHHHhhcc
Confidence 00 0 0 0111222221 1235689999999885 23333 23332221 11100011 12
Q ss_pred CcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhC
Q 002403 195 EGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFR 266 (927)
Q Consensus 195 ~gsyIyeEFi~~~G~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-Lt~e----Ek~iA~k~~~afg 266 (927)
++.+++||||+- +..+-|-++|. .+++.-.|..- ..+++..--+. .|.. |+++ -.++|.++++++|
T Consensus 266 ~~~vlVEe~I~g-~rei~V~vl~d~~G~vv~l~~rd~s----~qr~~~k~ie~-~Pa~~l~~~~~~~l~~~a~~~~~alG 339 (540)
T 3glk_A 266 GSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTVG 339 (540)
T ss_dssp TCCEEEEECCSS-EEEEEEEEEECTTSCEEEEEEEEEE----EC---CCSEEE-ESCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeceeee----eeecccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 678999999953 48888888874 56776666431 12222111111 2333 4543 4578999999999
Q ss_pred C-ceeEEEEEeeC-CCcEEEecCCcc
Q 002403 267 Q-AVCGFDLLRCE-GRSYVCDVNGWS 290 (927)
Q Consensus 267 q-~VcGfDlLRs~-~~syV~DVNGwS 290 (927)
. .+++||++.+. |.+|++|||--.
T Consensus 340 ~~G~~~VEf~~d~dg~~~~lEiNpR~ 365 (540)
T 3glk_A 340 YVSAGTVEYLYSQDGSFHFLELNPRL 365 (540)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEECSC
T ss_pred CccceEEEEEEcCCCCEEEEEEECCC
Confidence 8 58899999874 559999999643
No 58
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.93 E-value=7.6e-10 Score=129.19 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=127.6
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEE--E--ec-------c-CC
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--V--NR-------E-VP 122 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~--~--~r-------~-~p 122 (927)
.+|++++-|+.-.--....+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. + .. + ..
T Consensus 139 ~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~ 218 (587)
T 3jrx_A 139 PVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRI 218 (587)
T ss_dssp TCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCC
T ss_pred CCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeeccccccccccccccccccc
Confidence 578887776432222233455667776665 9999999999999999999999999999764 0 00 0 00
Q ss_pred Ccccc----c-cccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---cc
Q 002403 123 YQELD----Y-FIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RR 194 (927)
Q Consensus 123 ~~~~~----~-~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~---r~ 194 (927)
...+. . ..+.++.... -..+++|+|+||..|. .|-|++ + +.+... +..-.... ..
T Consensus 219 ~~~~~~~~~~~v~s~eea~~~-a~~iGyPvVVKp~~Gg-----------GGkGv~-i---V~s~eE-L~~a~~~a~~~~~ 281 (587)
T 3jrx_A 219 SVPEDVYDKGCVKDVDEGLEA-AERIGFPLMIKASEGG-----------GGKGIR-K---AESAED-FPILFRQVQSEIP 281 (587)
T ss_dssp CCCHHHHHTTSCCSHHHHHHH-HHHHCSSEEEEETTCC-----------SSSSEE-E---ECSTTT-HHHHHHHHHHHST
T ss_pred ccchhhccccccCCHHHHHHH-HHhcCCeEEEEeCCCC-----------CCCCeE-E---eCCHHH-HHHHHHHHHhhcc
Confidence 00000 0 1111222221 1246789999999986 344442 2 222211 11100011 12
Q ss_pred CcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeeee-CCHH----HHHHHHHHHHHhC
Q 002403 195 EGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFR 266 (927)
Q Consensus 195 ~gsyIyeEFi~~~G~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-Lt~e----Ek~iA~k~~~afg 266 (927)
++.+++||||+- +..+-|-+++. .+++.-.|..- ..+++..--+. .|.. |+++ -.++|.++++++|
T Consensus 282 ~~~vlVEeyI~g-~rei~V~vl~D~~G~vv~l~~rd~s----iqrr~qk~ie~-aPa~~l~~~~~~~i~~~A~~~a~alG 355 (587)
T 3jrx_A 282 GSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTVG 355 (587)
T ss_dssp TCCEEEEECCCS-CEEEEEEEEECSSSCEEEEEEEEEE----EESSSCEEEEE-ESCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeecc----ccccccceeEe-cCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 678999999964 48899988875 56776556431 12222111111 2333 4553 4578999999999
Q ss_pred C-ceeEEEEEeeC-CCcEEEecCCcc
Q 002403 267 Q-AVCGFDLLRCE-GRSYVCDVNGWS 290 (927)
Q Consensus 267 q-~VcGfDlLRs~-~~syV~DVNGwS 290 (927)
. .+++||++.+. |.+|++|||--.
T Consensus 356 y~G~~~VEfl~d~dG~~yflEINpRl 381 (587)
T 3jrx_A 356 YVSAGTVEYLYSQDGSFHFLELNPRL 381 (587)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEESSC
T ss_pred CcceeEEEEEEeCCCCEEEEEEeCCC
Confidence 8 58889999874 559999999643
No 59
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.93 E-value=1.7e-09 Score=133.80 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=127.9
Q ss_pred CcCeeeccccCCCchHHHHH-----HHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAES-----YATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~-----y~~lr~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~ 129 (927)
.+|++++.++....+.-+++ .++..+..++ |+.++..++.||....++|+++|||+|++..+...
T Consensus 82 ~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~--------- 152 (1073)
T 1a9x_A 82 RPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTM--------- 152 (1073)
T ss_dssp CCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSH---------
T ss_pred CCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCH---------
Confidence 57999988764333422221 4556776555 99999999999999999999999999999988751
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCC
Q 002403 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT 206 (927)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~---~~r~~gsyIyeEFi~~ 206 (927)
++.... -..++.|+|+||..|. .|.|+. +++ |.. ++..-.. .....+.+|+||||+-
T Consensus 153 ---~ea~~~-~~~ig~PvVvKp~~~~-----------Gg~Gv~-iv~---~~e-el~~~~~~~~~~~~~~~vlvEe~I~G 212 (1073)
T 1a9x_A 153 ---EEALAV-AADVGFPCIIRPSFTM-----------GGSGGG-IAY---NRE-EFEEICARGLDLSPTKELLIDESLIG 212 (1073)
T ss_dssp ---HHHHHH-HHHHCSSEEEEETTCC-----------TTTTCE-EES---SHH-HHHHHHHHHHHHCTTSCEEEEECCTT
T ss_pred ---HHHHHH-HHHcCCCEEEEECCCC-----------CCCceE-EeC---CHH-HHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 222221 1235689999999875 233332 111 111 1110000 0113568999999983
Q ss_pred CCceeEEEEECCc---ee--EEEeecCCCCCCceeecCCCCcee--eee-eCCH----HHHHHHHHHHHHhCCc--eeEE
Q 002403 207 GGTDVKVYTVGPE---YA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTP----NEKQMAREVCIAFRQA--VCGF 272 (927)
Q Consensus 207 ~G~DIKvytVG~~---~v--hAe~RkSPv~dG~vrrN~~gke~r--~~v-~Lt~----eEk~iA~k~~~afgq~--VcGf 272 (927)
...+.|-++++. ++ -.+.|..| .| .|.|... .|. .|++ +-+++|.++++++|.. +|+|
T Consensus 213 -~~E~~v~v~~d~~g~~v~~~~~e~~dp--~~-----v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~v 284 (1073)
T 1a9x_A 213 -WKEYEMEVVRDKNDNCIIVCSIENFDA--MG-----IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNV 284 (1073)
T ss_dssp -SEEEEEEEEECTTCCEEEEEEEEESSC--TT-----SCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred -CeEEEEEEEEeCCCCEEEEEEEecccC--Cc-----cccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEE
Confidence 268888888743 22 23445455 23 2323322 244 4887 4467899999999997 9999
Q ss_pred EEEeeC--CCcEEEecCC
Q 002403 273 DLLRCE--GRSYVCDVNG 288 (927)
Q Consensus 273 DlLRs~--~~syV~DVNG 288 (927)
|++... |++||+|||-
T Consensus 285 df~~~~~~g~~~viEiNp 302 (1073)
T 1a9x_A 285 QFAVNPKNGRLIVIEMNP 302 (1073)
T ss_dssp EEEECTTTCCEEEEEEES
T ss_pred EEEEECCCCCEEEEEecC
Confidence 999984 6799999993
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.91 E-value=7.2e-10 Score=131.13 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=124.5
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|++++-|+.-.-.....+.++..+. |.-++.++..+++||..+.++|+++|||+|++....-. +.++
T Consensus 100 ~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~~~----------s~~e 169 (675)
T 3u9t_A 100 GAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQ----------DLET 169 (675)
T ss_dssp TCSEEECCSSTTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSCCC----------CTTH
T ss_pred CcCEEEeCCcccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccCCC----------CHHH
Confidence 478898866321111344555666765 45589999999999999999999999999987642111 1122
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeeccCCC
Q 002403 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMPTG 207 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEFi~~~ 207 (927)
.... -..+++|+|+||..|. .|.|++ + +.+... +..-....+ .++.+|+||||+..
T Consensus 170 ~~~~-a~~igyPvvvKp~~G~-----------Gg~Gv~-i---v~~~~e-l~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 170 FRRE-AGRIGYPVLLKAAAGG-----------GGKGMK-V---VEREAE-LAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp HHHH-HHHSCSSBCCBCCC-----------------CC-C---BCCTTT-HHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred HHHH-HHhCCCcEEEEECCCC-----------CCccEE-E---ECCHHH-HHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 2221 1235689999999986 344442 3 322221 111111111 15689999999862
Q ss_pred CceeEEEEEC---CceeEEEeecCCCCCCceeecCCCCceeeeee-CCHHH----HHHHHHHHHHhCC-ceeEEEEEeeC
Q 002403 208 GTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE 278 (927)
Q Consensus 208 G~DIKvytVG---~~~vhAe~RkSPv~dG~vrrN~~gke~r~~v~-Lt~eE----k~iA~k~~~afgq-~VcGfDlLRs~ 278 (927)
..+-|-+++ +++++...|...+. +++..-.+. .|.. |+++. .++|.++++++|. .+++||++.+.
T Consensus 233 -reiev~v~~d~~G~vv~l~~rd~s~q----r~~qk~ie~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~ 306 (675)
T 3u9t_A 233 -RHVEIQVFADRHGHCLYLNERDCSIQ----RRHQKVVEE-APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE 306 (675)
T ss_dssp -BCEEEEEEECSSSCEEEEEEEECCCB----SSSSBCEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT
T ss_pred -cEEEEEEEEcCCCCEEEEecccccee----eccceEEEE-CCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC
Confidence 677776665 36788877765321 222211122 2433 66644 5689999999999 68999999885
Q ss_pred C-CcEEEecCCcc
Q 002403 279 G-RSYVCDVNGWS 290 (927)
Q Consensus 279 ~-~syV~DVNGwS 290 (927)
+ .+|++|||--.
T Consensus 307 dG~~~~iEiNpR~ 319 (675)
T 3u9t_A 307 RGQFFFMEMNTRL 319 (675)
T ss_dssp TSCBCBCEEESSC
T ss_pred CCCEEEEeccccc
Confidence 5 59999999654
No 61
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.89 E-value=5.8e-09 Score=130.08 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=98.0
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~ 130 (927)
.+|++++-|+ |.. ..+.+.++..+. |+-++.++..+++||..+.++|+++|||+|++. .+..
T Consensus 93 ~iD~V~pg~g--~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s----------- 159 (1165)
T 2qf7_A 93 GADAIHPGYG--LLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDD----------- 159 (1165)
T ss_dssp TCSEEECCSS--TTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC--------------------
T ss_pred CCCEEEECCC--chhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCC-----------
Confidence 4788888663 321 233455666775 556999999999999999999999999999987 3432
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc---cCcceEEeeccCCC
Q 002403 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR---REGSYIYEEFMPTG 207 (927)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r---~~gsyIyeEFi~~~ 207 (927)
.++..... ..++.|+|+||..|. .|-|+ ++.+....-...+..-....+ .++.+++||||+.
T Consensus 160 -~eea~~~a-~~igyPvVVKp~~g~-----------GG~Gv-~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g- 224 (1165)
T 2qf7_A 160 -MAEVAKMA-AAIGYPVMLKASWGG-----------GGRGM-RVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER- 224 (1165)
T ss_dssp --------------------------------------------------------------------------CCCSS-
T ss_pred -HHHHHHHH-HhcCCCEEEEeCCCC-----------CCCCE-EEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-
Confidence 12222211 235689999999986 45565 344433222222221000000 1467999999974
Q ss_pred CceeEEEEECC---ceeEEEeecCCCCCCceeecCCCC-ceeeee-eCCHHH----HHHHHHHHHHhCCc-eeEEEEEee
Q 002403 208 GTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK-EVRYPV-LLTPNE----KQMAREVCIAFRQA-VCGFDLLRC 277 (927)
Q Consensus 208 G~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gk-e~r~~v-~Lt~eE----k~iA~k~~~afgq~-VcGfDlLRs 277 (927)
|..+.|.++++ .+++...|.. .+.|+ +++ ....|. .|+++. .++|.++++++|.. +++||++.+
T Consensus 225 g~EisV~vl~D~~G~vv~l~~r~~-----s~~r~-~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd 298 (1165)
T 2qf7_A 225 ARHVESQILGDTHGNVVHLFERDC-----SVQRR-NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMD 298 (1165)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEE-----EEEET-TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred CcEEEEEEEEcCCCcEEEEEeecc-----cceec-ccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEE
Confidence 77888888874 3677656633 22232 122 112243 477643 57999999999986 678999998
Q ss_pred -C-CCcEEEecCCc
Q 002403 278 -E-GRSYVCDVNGW 289 (927)
Q Consensus 278 -~-~~syV~DVNGw 289 (927)
. |++||+|||--
T Consensus 299 ~~dg~~~~iEiNpR 312 (1165)
T 2qf7_A 299 ADTGKFYFIEVNPR 312 (1165)
T ss_dssp TTTTEEEEEEEECS
T ss_pred CCCCCEEEEEEEcC
Confidence 5 55999999954
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.88 E-value=5.7e-09 Score=129.09 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=120.0
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~-~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d 134 (927)
.+|.+|+.++.-.++ ...+.++..+.. +-|+..+..++.||....++|+++|||+|++..+.. .++
T Consensus 634 ~~d~Vi~~~g~~~~~-~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s------------~ee 700 (1073)
T 1a9x_A 634 KPKGVIVQYGGQTPL-KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTA------------IEM 700 (1073)
T ss_dssp CCSEEECSSSTHHHH-TTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCS------------HHH
T ss_pred CcceEEeecCCchHH-HHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECC------------HHH
Confidence 468888876643333 334555567754 459999999999999999999999999999998865 122
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC-CceeE
Q 002403 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVK 212 (927)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~-G~DIK 212 (927)
....- ..+++|+|+||..|. ..++.|-+... -....++..- ....+..+|+||||+.. --+|-
T Consensus 701 a~~~~-~~ig~PvvVKP~~~~gG~Gv~iv~~~~---el~~~~~~a~-----------~~~~~~~vlvEefI~g~~E~~V~ 765 (1073)
T 1a9x_A 701 AVEKA-KEIGYPLVVRASYVLGGRAMEIVYDEA---DLRRYFQTAV-----------SVSNDAPVLLDHFLDDAVEVDVD 765 (1073)
T ss_dssp HHHHH-HHHCSSEEEEC-------CEEEECSHH---HHHHHHHHCC-------------------EEEBCCTTCEEEEEE
T ss_pred HHHHH-HHcCCCEEEEECCCCCCCCeEEECCHH---HHHHHHHHHH-----------hhCCCCcEEEEEccCCCcEEEEE
Confidence 22211 125689999999874 12222222111 0111111110 11135679999999753 44555
Q ss_pred EEEECCc-eeEEEeecCCCCCCceeecCCCCceeeee---eCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 002403 213 VYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPV---LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (927)
Q Consensus 213 vytVG~~-~vhAe~RkSPv~dG~vrrN~~gke~r~~v---~Lt~----eEk~iA~k~~~afgq-~VcGfDlLRs~~~syV 283 (927)
++.-|.. ++.+..+.- .+.+.|-|+....+ .|++ +-+++|.++++++|. .++++|++..++++||
T Consensus 766 ~l~d~~~v~~~~i~e~~------~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~~~~~v 839 (1073)
T 1a9x_A 766 AICDGEMVLIGGIMEHI------EQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYL 839 (1073)
T ss_dssp EEECSSCEEEEEEEEES------SCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCEEE
T ss_pred EEEECCeEEEEeeEEEE------eccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCeEEE
Confidence 5554543 344443321 12344544444332 5665 567799999999999 8999999998889999
Q ss_pred EecCC
Q 002403 284 CDVNG 288 (927)
Q Consensus 284 ~DVNG 288 (927)
+|||-
T Consensus 840 iEvNp 844 (1073)
T 1a9x_A 840 IEVNP 844 (1073)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99994
No 63
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.83 E-value=7.8e-10 Score=127.32 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=121.0
Q ss_pred CcCeeeccccC--CCch-HHHHHHHHhcC---CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-----ecc----
Q 002403 56 ICDCLIAFYSS--GYPL-EKAESYATLRK---PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-----NRE---- 120 (927)
Q Consensus 56 ~~D~lIsf~s~--gfpl-~kai~y~~lr~---p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~-----~r~---- 120 (927)
.+|++++.++. -.+. ..+ ++..+ ++.-++..+..+++||..+.++|+++|||+|++..+ ..+
T Consensus 130 ~id~Vi~g~G~~sE~~~~~~~---l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~ 206 (554)
T 1w96_A 130 DVDAVWAGWGHASENPLLPEK---LSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTG 206 (554)
T ss_dssp TCSEEECCSSTTTTCTHHHHH---HHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTC
T ss_pred CCCEEEECCCccccCHHHHHH---HHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCcccccccccccccccc
Confidence 38999987632 1222 333 34444 567788889999999999999999999999997643 000
Q ss_pred ---CCCccc--cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---
Q 002403 121 ---VPYQEL--DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV--- 192 (927)
Q Consensus 121 ---~p~~~~--~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~--- 192 (927)
-|.... ....+.++..... ..++.|+|+||..|. .|-|+. + +.+.. ++..-+...
T Consensus 207 l~~ip~~~~~~~~~~~~~e~~~~~-~~~g~PvVvKp~~g~-----------gg~Gv~-~---v~~~~-el~~a~~~~~~~ 269 (554)
T 1w96_A 207 LVSVDDDIYQKGCCTSPEDGLQKA-KRIGFPVMIKASEGG-----------GGKGIR-Q---VEREE-DFIALYHQAANE 269 (554)
T ss_dssp CEECCHHHHGGGSCSSHHHHHHHH-HHHCSSEEEEETTCC-----------TTTTEE-E---ECSHH-HHHHHHHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHH-HHcCCCEEEEECCCC-----------CCceEE-E---ECCHH-HHHHHHHHHHhh
Confidence 000000 0000112222211 235689999999986 333442 1 21111 111000011
Q ss_pred ccCcceEEeeccCCCCceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCce-eeeee-CCH----HHHHHHHHHHH
Q 002403 193 RREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPVL-LTP----NEKQMAREVCI 263 (927)
Q Consensus 193 r~~gsyIyeEFi~~~G~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~-r~~v~-Lt~----eEk~iA~k~~~ 263 (927)
..++.+|+||||+. |..+-|.++++ ++++...|...+.+ ++ .|-+ -.|.. +++ +-+++|.++++
T Consensus 270 ~~~~~vlvEe~i~g-~~e~sv~vl~d~~G~vv~l~~~~~~~~~----~~--~k~~~~~P~~~l~~~~~~~i~~~a~~~~~ 342 (554)
T 1w96_A 270 IPGSPIFIMKLAGR-ARHLEVQLLADQYGTNISLFGRDCSVQR----RH--QKIIEEAPVTIAKAETFHEMEKAAVRLGK 342 (554)
T ss_dssp STTCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEEEEEEEE----TT--EEEEEEESCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeeeeeEe----ec--cceeeeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 12578999999984 57888877764 45554444322111 11 1100 12333 554 45778999999
Q ss_pred HhCC-ceeEEEEEee--CCCcEEEecCC
Q 002403 264 AFRQ-AVCGFDLLRC--EGRSYVCDVNG 288 (927)
Q Consensus 264 afgq-~VcGfDlLRs--~~~syV~DVNG 288 (927)
++|. .+++||++.+ .|++||+|||-
T Consensus 343 alg~~G~~~ve~~~~~~dg~~~~iEiN~ 370 (554)
T 1w96_A 343 LVGYVSAGTVEYLYSHDDGKFYFLELNP 370 (554)
T ss_dssp HHTCCEEEEEEEEECTTTCCEEEEEEEC
T ss_pred HcCCcceEEEEEEEECCCCCEEEEEeeC
Confidence 9998 7999999986 46799999996
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.83 E-value=6e-09 Score=129.75 Aligned_cols=198 Identities=20% Similarity=0.204 Sum_probs=121.2
Q ss_pred CcCeeeccccCCCchHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccc
Q 002403 56 ICDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e~ 132 (927)
.+|++++-|+.-.-.....+.++..+. |.-++.++..+++||..+.++|+++|||+|++. .+.. .
T Consensus 77 ~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s------------~ 144 (1150)
T 3hbl_A 77 NVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKS------------Y 144 (1150)
T ss_dssp TCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCS------------S
T ss_pred CCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCC------------H
Confidence 478999876431111234455567775 445999999999999999999999999999987 3332 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeeccC
Q 002403 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (927)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r-------~~gsyIyeEFi~ 205 (927)
++.... -..+++|+|+||..|. .|.|+ +.+.+... +..-....+ .++.+|+||||+
T Consensus 145 eea~~~-a~~iGyPvVVKP~~Gg-----------Gg~Gv----~vv~s~ee-L~~a~~~a~~~a~~~fg~~~vlVEeyI~ 207 (1150)
T 3hbl_A 145 ELAKEF-AEEAGFPLMIKATSGG-----------GGKGM----RIVREESE-LEDAFHRAKSEAEKSFGNSEVYIERYID 207 (1150)
T ss_dssp STTTTT-GGGTCSSEEEECCC----------------------CEECCSSS-CTHHHHSSSSSCC------CBEEECCCS
T ss_pred HHHHHH-HHHcCCCEEEEeCCCC-----------CCCCE----EEECCHHH-HHHHHHHHHHHHHhhcCCCcEEEEEccC
Confidence 122111 1235689999999886 33343 23333222 111011111 157799999997
Q ss_pred CCCceeEEEEECC---ceeEEEeecCCCCCCceeec-CCCCceeeee-eCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 002403 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRN-PDGKEVRYPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (927)
Q Consensus 206 ~~G~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN-~~gke~r~~v-~Lt~e----Ek~iA~k~~~afgq-~VcGfDlL 275 (927)
- .+.+-|-++|. .++|...|... +.++ ....+. .|. .|+++ -.++|.++++++|. .++.||++
T Consensus 208 G-~reieV~vl~d~~G~vv~l~er~~s-----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEfl 280 (1150)
T 3hbl_A 208 N-PKHIEVQVIGDEHGNIVHLFERDCS-----VQRRHQKVVEV-APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFL 280 (1150)
T ss_dssp S-CEEEEEEEEECSSSCEEEEEEEEEE-----EESSSCEEEEE-SSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred C-CcEEEEEEEEeCCCCEEEEEeeccc-----eeccCceeEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 4 36777777754 56777666442 2221 111122 233 46664 45789999999996 45669999
Q ss_pred eeCCCcEEEecCCc
Q 002403 276 RCEGRSYVCDVNGW 289 (927)
Q Consensus 276 Rs~~~syV~DVNGw 289 (927)
.+.+++|++|||--
T Consensus 281 vd~d~~y~iEINpR 294 (1150)
T 3hbl_A 281 VSGDEFFFIEVNPR 294 (1150)
T ss_dssp EETTEEEEEEEECS
T ss_pred EECCeEEEEEEeCC
Confidence 99889999999954
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.82 E-value=1.1e-08 Score=128.00 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=95.0
Q ss_pred CcCeeeccccCCCch--HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE-EEeccCCCcccccccc
Q 002403 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIE 131 (927)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~-~~~r~~p~~~~~~~~e 131 (927)
.+|++++-| ||-. ....+.++..+... -++.++..+++||..+.++|+++|||+|+.. .+..
T Consensus 103 ~iDaI~pg~--g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s------------ 168 (1236)
T 3va7_A 103 GAQAIIPGY--GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKD------------ 168 (1236)
T ss_dssp TCSEEECCS--SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC-------------------
T ss_pred CCCEEEECC--ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCC------------
Confidence 489999977 4422 23445566677544 5999999999999999999999999998843 3332
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCCCC
Q 002403 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (927)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~---~~r~~gsyIyeEFi~~~G 208 (927)
.++.... -..+++|+|+||..|. .|.|+. +++....-...++.-.. ....++.+|+||||+- +
T Consensus 169 ~eea~~~-a~~iGyPvVVKP~~Gg-----------GGkGV~-iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~ 234 (1236)
T 3va7_A 169 AKEAKEV-AKKLEYPVMVKSTAGG-----------GGIGLQ-KVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-A 234 (1236)
T ss_dssp -----------------------------------------------------------------------------C-C
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-C
Confidence 1222221 1235689999999987 455653 45443322222221000 0012567999999975 5
Q ss_pred ceeEEEEECC---ceeEEEeecCCCCCCceeecCCCCceeeee-eCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeC-
Q 002403 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE- 278 (927)
Q Consensus 209 ~DIKvytVG~---~~vhAe~RkSPv~dG~vrrN~~gke~r~~v-~Lt~e----Ek~iA~k~~~afgq~-VcGfDlLRs~- 278 (927)
..+-|.++++ .+++.-.|..- ..+++..-.+. .|. .|+++ -.++|.++++++|.. +++||++.+.
T Consensus 235 rEisV~vl~Dg~g~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d 309 (1236)
T 3va7_A 235 RHVEIQMMGDGFGKAIAIGERDCS----LQRRNQKVIEE-TPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQ 309 (1236)
T ss_dssp EEEEEEEEEESSSCEEEEEEEEEE----EEETTEEEEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETT
T ss_pred eEEEEEEEecCCceEEEEeeeeee----eeecCcceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC
Confidence 8888888864 45665555321 11222111122 244 36664 457889999999995 9999999984
Q ss_pred -CCcEEEecCCc
Q 002403 279 -GRSYVCDVNGW 289 (927)
Q Consensus 279 -~~syV~DVNGw 289 (927)
+++||+|||-=
T Consensus 310 ~g~~y~iEINpR 321 (1236)
T 3va7_A 310 RDEFYFLEVNAR 321 (1236)
T ss_dssp TTEEEEEEEECS
T ss_pred CCcEEEEEEECC
Confidence 68999999953
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=98.41 E-value=1.5e-06 Score=94.80 Aligned_cols=170 Identities=15% Similarity=0.087 Sum_probs=89.6
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 002403 78 TLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (927)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (927)
+..+..+.-+..+.....||..-.+.|+++|||+|++.- + ++. .++.|+|+||..|.
T Consensus 80 e~~~~p~~p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~-----~----------ee~------~i~~PviVKp~~g~-- 136 (320)
T 2pbz_A 80 EKAKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVVE-----P----------EDA------KPDELYFVRIEGPR-- 136 (320)
T ss_dssp HTCCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC-----S----------CCC------CSSCCEEEECC-----
T ss_pred HHcCCCcCCCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC-----H----------hHc------CcCCcEEEEECCCC--
Confidence 345555666677888899998888999999999998871 1 111 25689999999997
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE--CCceeEEEeecCCCCCCc
Q 002403 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV--GPEYAHAEARKSPVVDGV 234 (927)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~-~G~DIKvytV--G~~~vhAe~RkSPv~dG~ 234 (927)
.|-|.. +.+ + .++..-.... .+.+|+||||+. .......|-+ |.-.+-...++--..||.
T Consensus 137 ---------ggkG~~-~v~---~--eel~~~~~~~--~~~~IiEEfI~g~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~ 199 (320)
T 2pbz_A 137 ---------GGSGHF-IVE---G--SELEERLSTL--EEPYRVERFIPGVYLYVHFFYSPILERLELLGVDERVLIADGN 199 (320)
T ss_dssp ----------------------C--EECSCCCC------CCEEEECCCSCEEEEEEEEETTTTEEEEEEEEEEEETTCSS
T ss_pred ---------CCCCEE-EEC---h--HHHHHHHHhc--CCCEEEEeeeceEecceeEEeccccCceeEEEecceEEEECCe
Confidence 454553 333 2 2333211011 257999999984 2211111110 000000111111013555
Q ss_pred eee-cCCCCcee---eeeeCC----HHHHHHHHHHHHHhC-------CceeEEEEEeeCCCcEEEecCC
Q 002403 235 VMR-NPDGKEVR---YPVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCEGRSYVCDVNG 288 (927)
Q Consensus 235 vrr-N~~gke~r---~~v~Lt----~eEk~iA~k~~~afg-------q~VcGfDlLRs~~~syV~DVNG 288 (927)
.+- +...--+- .|..++ ++-.++|.+++.+++ ..+.++| +..+++.||+|||.
T Consensus 200 ~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~~~dg~~~v~EIap 267 (320)
T 2pbz_A 200 ARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-FAYDGSFKAIGIAS 267 (320)
T ss_dssp SSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-EECSSSCEEEEEES
T ss_pred eecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-EcCCCcEEEEEecC
Confidence 433 11000000 055544 466789999999983 4567889 65567899999984
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.94 E-value=1.6e-05 Score=87.84 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=93.2
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-Cc
Q 002403 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DH 157 (927)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dH 157 (927)
..+..+.-+-.+..+..||....+.|+++|||||++ +.. .++. ..|+|+||..+. .+
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~------------~~e~--------~~PvVVK~~~~a~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLREAGLRVPKK--YES------------PEDI--------DGTVIVKFPGARGGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESS------------GGGC--------CSCEEEECSCCCC--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCC------------HHHc--------CCCEEEeeCCCCCCC
Confidence 555545556666777888988889999999999986 221 1111 269999999875 23
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeEEEE-ECCc-eeEEEeec--CCCCC
Q 002403 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYT-VGPE-YAHAEARK--SPVVD 232 (927)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~-~G~DIKvyt-VG~~-~vhAe~Rk--SPv~d 232 (927)
+++|--.... ....++.+-.. ..+.. ..+..+|.||||.. .......|- ++++ .+-.+.++ +. .|
T Consensus 165 Gv~v~~s~ee---~~~a~~~~~~~-~~~~~-----~~~~~viIEEfl~G~e~s~~~f~~~~~~~~e~~~id~r~~~~-~d 234 (361)
T 2r7k_A 165 GYFIASSTEE---FYKKAEDLKKR-GILTD-----EDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN-ID 234 (361)
T ss_dssp -EEEESSHHH---HHHHHHHHHHT-TSCCH-----HHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEE-HH
T ss_pred CEEEECCHHH---HHHHHHHHHhc-ccccc-----CCCCeEEEEeccceEEeeEEEEecccCCeeEEEEecceEEee-cc
Confidence 3333322111 11111111000 00000 11246999999984 211111122 1110 11111111 10 12
Q ss_pred Ccee----ec-CCCCceee------eeeCC----HHHHHHHHHHHHHhC-------CceeEEEEEeeC-CCcEEEecCC
Q 002403 233 GVVM----RN-PDGKEVRY------PVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCE-GRSYVCDVNG 288 (927)
Q Consensus 233 G~vr----rN-~~gke~r~------~v~Lt----~eEk~iA~k~~~afg-------q~VcGfDlLRs~-~~syV~DVNG 288 (927)
|..+ .. ..+.+..+ |..++ ++-.++|.++++++| -.+.++++.-+. |+.||+|||.
T Consensus 235 gi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIap 313 (361)
T 2r7k_A 235 GLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSA 313 (361)
T ss_dssp HHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEES
T ss_pred cceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcC
Confidence 2221 00 01111122 55555 566788999999983 667899998875 4589999994
No 68
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=97.83 E-value=0.00023 Score=76.43 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhHHHhhc--cCCCCCchhhhcccc-cccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
-+||+.|| |+ +|| ...| ..++.|+||+-.|+.+||++|+.||....|
T Consensus 47 ~~lG~~lr~rY~----~ll--~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~p~~~ 96 (354)
T 1nd6_A 47 YELGEYIRKRYR----KFL--NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEG 96 (354)
T ss_dssp HHHHHHHHHHTT----TTT--CSSCCGGGEEEEEESCHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHHHHH----HHh--ccccCcCeEEEEECCchHHHHHHHHHHHhcCCCCC
Confidence 68999999 96 343 3344 457899999999999999999999996543
No 69
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=97.74 E-value=0.00027 Score=77.09 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=40.7
Q ss_pred hhHHHhhc--cCCCCCchhhhcccc-cccceEeecCCchHHHHHHHHHhhhcccCCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~lege 548 (927)
..||+.+| |-.. .||| ..+| .+++.++||+..|+++||++|+.||..-.+.
T Consensus 49 ~~lG~~lr~~Yv~~-~~~l--~~~~~~~~v~~rst~~~Rt~~Sa~~~l~Gl~p~~~~ 102 (342)
T 3it3_A 49 YNLGLQLRKRYIDK-FGLL--PEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTG 102 (342)
T ss_dssp HHHHHHHHHHHTTT-SCSS--CSSCCTTSEEEEECSSHHHHHHHHHHHHHHSCTTSS
T ss_pred HHHHHHHHHHHhhc-cccc--cccccCceEEEEECCChHHHHHHHHHHHHhCCCCCC
Confidence 57999999 8422 2453 4445 6899999999999999999999999987653
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=4.3e-07 Score=80.95 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=36.3
Q ss_pred hHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 002403 92 HLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (927)
Q Consensus 92 ~~l~DR~~~lqiL~~~gIp~P~t~--~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (927)
.+++||..+.++|+++|||+|++. .+.. .++.... ...++.|+|+||.+|.
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~------------~~~~~~~-~~~~~~P~vvKp~~~~ 56 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKD------------AEEAVRI-AREIGYPVMIKASAGG 56 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSS------------HHHHHHH-HHHHCSSEEEEETTSC
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCC------------HHHHHHH-HHhcCCCEEEEECCCC
Confidence 467888899999999999999986 4443 1222211 1235689999999985
No 71
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=97.08 E-value=2.6e-05 Score=80.39 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHH
Q 002403 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMK 172 (927)
Q Consensus 94 l~DR~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~ 172 (927)
..|+..+.++|+++|||+|++.++... ++.... ...++.|+|+||.++ --| .+.|||+.
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~~~~~~~------------~ea~~~-a~~lg~PvvvKp~~~~~~~-------r~~~gGv~ 78 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEEKLAKTL------------DEALEY-AKEIGYPVVLKLMSPQILH-------KSDAKVVM 78 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCCEEESSH------------HHHHHH-HHHHCSSEEEEEECTTCCC-------HHHHTCEE
T ss_pred CCCHHHHHHHHHHcCcCCCCeEEeCCH------------HHHHHH-HHHhCCCEEEEEccCCCCc-------CCccCCEE
Confidence 458899999999999999999988651 222221 123568999999998 211 11345553
Q ss_pred HHHhhcCCCccccccccccc----------ccCcceEEeeccCCCCceeEEEEECCc
Q 002403 173 ELFRKVGNRSSEFHPDVRRV----------RREGSYIYEEFMPTGGTDVKVYTVGPE 219 (927)
Q Consensus 173 rLfrki~n~sS~~~~~~~~~----------r~~gsyIyeEFi~~~G~DIKvytVG~~ 219 (927)
+ .+.+....-. -.... .....+|+|||++ .|..+-|-++++.
T Consensus 79 -~--~v~~~~el~~-a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 79 -L--NIKNEEELKK-KWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp -E--EECSHHHHHH-HHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred -E--eCCCHHHHHH-HHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 2 1111111000 00000 0135799999998 4677766666543
No 72
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=97.00 E-value=0.00093 Score=74.32 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=40.7
Q ss_pred cch--hhHHHhhc--cCCCCCchhhhcccc---cccceEeecCCchHHHHHHHHHhhhcccC
Q 002403 492 NGV--NEIAYWWG--SHSEGTGLLRLHSTY---RHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (927)
Q Consensus 492 GGe--e~LG~~fR--Yp~~~~gLlrLhst~---rhDlKIysSdEgRVq~TAaaFakg~L~le 546 (927)
|.+ -.||+.+| |.. .|| |...| .+++.|+||+--|+.+||++|+.||.--.
T Consensus 51 G~~~~~~lG~~lr~ry~~--~~l--l~~~~~p~~~~v~v~st~~~RT~~SA~~~l~GlfP~~ 108 (410)
T 1dkq_A 51 GGELIAYLGHYQRQRLVA--DGL--LAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDC 108 (410)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTS--SCSSSCCCTTTEEEEECSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHh--cCC--CccccCCCcceEEEEeCCcHHHHHHHHHHHhhcCCCC
Confidence 444 68999999 842 355 56666 47899999999999999999999997543
No 73
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=94.05 E-value=0.29 Score=57.92 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=71.5
Q ss_pred HHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCC-CC---CEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 002403 75 SYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIP-VP---RYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (927)
Q Consensus 75 ~y~~lr~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp-~P---~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (927)
++++..+...+|.+.++- +.+|...--+.+.. | +| .|.+. +..+ +. ...+|.|
T Consensus 477 ~~l~~~~v~iieP~~~~l-lsNKailalLw~l~--p~hp~LLpT~f~-------------~~~~-l~------~~~yV~K 533 (619)
T 2io8_A 477 DVLLRPEVLVFEPLWTVI-PGNKAILPILWSLF--PHHRYLLDTDFT-------------VNDE-LV------KTGYAVK 533 (619)
T ss_dssp HHHTCTTCEEESCGGGGT-TTSTTHHHHHHHHS--TTCTTCCCEESS-------------CCHH-HH------HHCEEEE
T ss_pred HHHHhCCCEEECHHHHHH-hhhHHHHHHHHHhC--CCCCCCCCeeec-------------CCcc-cc------cCCEEEc
Confidence 334466788999998855 77775433333322 3 34 34321 1111 11 1359999
Q ss_pred eccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce-----eEEEEECCceeEEE
Q 002403 151 PVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD-----VKVYTVGPEYAHAE 224 (927)
Q Consensus 151 pv~G-edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~G~D-----IKvytVG~~~vhAe 224 (927)
|+-| +..||.|+-+ .|. . +.+..-.| .+..||||||++-...| |-+|+||++++.+.
T Consensus 534 Pi~gReG~nV~i~~~--~~~-~------~~~~~~~y--------~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~ 596 (619)
T 2io8_A 534 PIAGRCGSNIDLVSH--HEE-V------LDKTSGKF--------AEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTC 596 (619)
T ss_dssp ETTCCTTTTCEEECT--TSC-E------EEECCCTT--------TTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEE
T ss_pred cCCCCCCCCEEEEeC--CCh-h------Hhhccccc--------cCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEE
Confidence 9999 6677777643 111 0 00001111 24679999999988889 99999999999999
Q ss_pred eecC
Q 002403 225 ARKS 228 (927)
Q Consensus 225 ~RkS 228 (927)
.|.+
T Consensus 597 ~R~~ 600 (619)
T 2io8_A 597 LRGD 600 (619)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9997
No 74
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=90.51 E-value=0.34 Score=54.09 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCc-EEEeeccc
Q 002403 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP-FVEKPVHG 154 (927)
Q Consensus 97 R~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kP-fVeKpv~G 154 (927)
...+-++|+++|||+|+..++... +++... -..++.| +|+||..+
T Consensus 5 E~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~P~vVvK~~~~ 50 (388)
T 2nu8_B 5 EYQAKQLFARYGLPAPVGYACTTP------------REAEEA-ASKIGAGPWVVKCQVH 50 (388)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHCSSCEEEEECCS
T ss_pred HHHHHHHHHHCCcCCCCeeEECCH------------HHHHHH-HHHhCCCeEEEEEecC
Confidence 456788999999999999988752 222221 1235679 99999874
No 75
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Probab=90.07 E-value=0.24 Score=55.80 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=41.1
Q ss_pred hhHHHhhc--cCCCCCchhhhcccccccceEeecCCchHHHHHHHHHhhhcccCCCCCcceeeeE
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLV 557 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~legeltPilv~~V 557 (927)
-+||+.|| |+ +|+ .. ...+.|+||+-.||.+||++|+.||........|+-+..+
T Consensus 138 ~~lG~~lr~rY~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glfp~~~~~~~~~~~ii 194 (458)
T 2gfi_A 138 MKHGIAFRTKYG----ELF--DT--NDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNII 194 (458)
T ss_dssp HHHHHHHHHHHG----GGC--CT--TSCEEEEEESBHHHHHHHHHHHHHHHGGGCSTTTEEEEEE
T ss_pred HHHHHHHHHHhH----Hhc--Cc--CCceEEEecCCchHHHHHHHHHHhccCCCcccCCcceEEe
Confidence 68999999 95 343 22 4678999999999999999999999887644223433334
No 76
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=89.76 E-value=0.14 Score=55.73 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=38.8
Q ss_pred CcchhhhhhhhccccccC--c--ccHHHHHHHHHHhcceeccccccCCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 002403 709 PDVYDSCKYDLLHNAHLN--L--EGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNT 778 (927)
Q Consensus 709 pdiYD~iKYD~LHNr~f~--l--~~l~ELY~lAK~LaD~V~PqEYGIt~~EKL~IG~~is~pLL~KI~~DL~~~ 778 (927)
..|||++.+.-.||..+. + +.+.+|..++..-+++. ..--++......|||++|+..++..
T Consensus 181 ~~i~D~l~~~~~hg~~lp~w~~~~~~~~l~~l~~~~~~~~---------~~~~~~~~~~gg~ll~~i~~~l~~~ 245 (342)
T 3it3_A 181 ITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQ---------FKSQKVSYIMGGKLTNRMIEDLNNA 245 (342)
T ss_dssp HHHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHHHHHHH---------HTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHh---------hCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888887663 1 12344444443333321 1224578888999999999999863
No 77
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2
Probab=88.68 E-value=0.21 Score=56.50 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred cch--hhHHHhhc--cCCCCCchhhhcccccccceEeecCCchHHHHHHHHHhhhcccC
Q 002403 492 NGV--NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (927)
Q Consensus 492 GGe--e~LG~~fR--Yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~le 546 (927)
|.+ -+||+.|| |+. || .. ...+.|+||+-.||.+||++|+.||....
T Consensus 122 G~~q~~~lG~~lr~rY~~----ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glf~~~ 172 (460)
T 1qfx_A 122 GLLDAYNHGNDYKARYGH----LW--NG--ETVVPFFSSGYGRVIETARKFGEGFFGYN 172 (460)
T ss_dssp HHHHHHHHHHHHHHHHGG----GC--CS--SSCEEEEEESBHHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHhHH----Hh--CC--CCceEEEECCCcHHHHHHHHHHHHhcCCc
Confidence 544 68999999 863 43 22 56789999999999999999999998754
No 78
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=87.96 E-value=0.25 Score=55.25 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=35.7
Q ss_pred hhHHHhhc--cCCCCCchhhhcccccccceEeecCCchHHHHHHHHHhhhcccC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~le 546 (927)
-+||+.|| |+ +|+ .. +.+.|.||+-.||.+||++|+.||....
T Consensus 113 ~~lG~~lr~rY~----~ll--~~---~~v~vrST~~~Rti~Sa~~fl~Gl~p~~ 157 (442)
T 1qwo_A 113 VNSGIKFYQRYK----ALA--RS---VVPFIRASGSDRVIASGEKFIEGFQQAK 157 (442)
T ss_dssp HHHHHHHHHHTH----HHH--TT---CCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHh--cc---CceEEEeCCccHHHHHHHHHHHHhcCCc
Confidence 68999999 85 343 22 4688999999999999999999998654
No 79
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=86.88 E-value=0.52 Score=53.31 Aligned_cols=44 Identities=25% Similarity=0.125 Sum_probs=35.3
Q ss_pred hhHHHhhc--cCCCCCchhhhcccccccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
-+||+.|| |+. |+. . ..+.++||+-.||.+||++|+.||+..++
T Consensus 114 ~~lG~~~r~rY~~----l~~--~---~~~~~rst~~~Rt~~Sa~~f~~Gl~~~~~ 159 (444)
T 3k4q_A 114 VNSGIKFYQRYES----LTR--N---IVPFIRSSGSSRVIASGKKFIEGFQSTKL 159 (444)
T ss_dssp HHHHHHHHHHTHH----HHT--T---CCCEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH----hcc--C---CceEEEeCCccHHHHHHHHHHHhcCCCcc
Confidence 57899999 863 332 1 24779999999999999999999998653
No 80
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=86.80 E-value=0.3 Score=54.35 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=38.5
Q ss_pred hhHHHhhc--cCCCCCchhhhcc-ccc-ccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHS-TYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhs-t~r-hDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
..||+.|| |+. .||+ .. .|- .++.|+||+-.|+++||++|+.||....+
T Consensus 65 ~~lG~~lr~rY~~--~~ll--~~~~~~~~~v~~rst~~~Rt~~Sa~~fl~Gl~p~~~ 117 (418)
T 2wnh_A 65 VNKGREEGQHYRQ--LGLL--QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCG 117 (418)
T ss_dssp HHHHHHHHHHHHH--TTSS--CSSSCCTTTEEEEECSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHh--cCCc--ccCCCCCCeEEEEECCCHHHHHHHHHHHHHcCCCCC
Confidence 68999998 863 2453 33 244 57999999999999999999999986543
No 81
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=86.23 E-value=0.32 Score=51.97 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=30.2
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCccccccccchhhhhhhhhhcCCCCCcccccceEEEeec
Q 002403 859 RTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFEN 920 (927)
Q Consensus 859 RTRlYFTSESHIhSLLNvlr~~~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~lyE~ 920 (927)
+-.+||+-.+-|-+||..| |+.. ..+| .|-++|+||||.+
T Consensus 250 k~~~~~~HD~ti~~ll~aL---g~~~-----------------~~~p--p~as~i~fEl~~~ 289 (354)
T 1nd6_A 250 KLIMYSAHDTTVSGLQMAL---DVYN-----------------GLLP--PYASCHLTELYFE 289 (354)
T ss_dssp SEEEEEECHHHHHHHHHHT---TCCC-----------------SSCC--CTTCEEEEEEEEE
T ss_pred cEEEEEecHHHHHHHHHHc---CCCC-----------------CCCC--chhhheeeEEEec
Confidence 5799999999999888886 3321 1234 5889999999975
No 82
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=84.56 E-value=0.23 Score=55.62 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccC-cEEEeec
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWK-PFVEKPV 152 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~k-PfVeKpv 152 (927)
..+-++|+++|||+|+..++... +++.... ..++. |+|+||.
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------~ea~~~a-~~lg~~PvVvK~~ 48 (395)
T 2fp4_B 6 YQSKKLMSDNGVKVQRFFVADTA------------NEALEAA-KRLNAKEIVLKAQ 48 (395)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-HHHTCSSEEEEEC
T ss_pred HHHHHHHHHCCcCCCCeEEECCH------------HHHHHHH-HHcCCCcEEEEEe
Confidence 45778999999999999988652 2222211 22456 8999995
No 83
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=84.04 E-value=0.91 Score=50.83 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc
Q 002403 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (927)
Q Consensus 98 ~~~lqiL~~~gIp~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G 154 (927)
..+.++|+++|||+|++.++... ++.... -..+++|+|+||...
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~PvVvKa~~~ 49 (397)
T 3ufx_B 6 YQAKEILARYGVPVPPGKVAYTP------------EEAKRI-AEEFGKRVVIKAQVH 49 (397)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTSCEEEEECCS
T ss_pred HHHHHHHHHCCCCCCCeEEECCH------------HHHHHH-HHHcCCCEEEEEccc
Confidence 45788999999999999998762 222221 123558999999883
No 84
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=82.37 E-value=0.6 Score=52.23 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=38.1
Q ss_pred hhHHHhhc--cCCCCCchhhhccc--c-cccceEeecCCchHHHHHHHHHhhhcccCC
Q 002403 495 NEIAYWWG--SHSEGTGLLRLHST--Y-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (927)
Q Consensus 495 e~LG~~fR--Yp~~~~gLlrLhst--~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (927)
-.||+.|| |.. .||+ ... | ..++.|+||+--|+++||++|+.||.--.|
T Consensus 56 ~~lG~~lr~rY~~--~~ll--~~~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~P~~~ 109 (398)
T 3ntl_A 56 VYMGHYMREWLAQ--QGMV--KTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCD 109 (398)
T ss_dssp HHHHHHHHHHHHH--TTSS--CTTSCCCTTSEEEEECSSHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHhh--cCCC--ccccCCCcCeEEEEECCchHHHHHHHHHHHHhCCCCC
Confidence 57999999 821 2454 222 3 378999999999999999999999987654
No 85
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=82.31 E-value=0.56 Score=52.46 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=31.5
Q ss_pred eeeEEEeecchhHHHHHHHHHhcCCccccccccchhhhhhhhhhcCCCCCcccccceEEEeecC
Q 002403 858 VRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 921 (927)
Q Consensus 858 VRTRlYFTSESHIhSLLNvlr~~~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~lyE~~ 921 (927)
.|-.+||+-.+-|-+|++.|- +.. |.- .. .-..+ -|-+.|+||+|.+.
T Consensus 279 ~Kl~lysgHDttI~~ll~aLg---~~~---~~l---p~----~~~~~---P~gs~lifEl~~~~ 326 (398)
T 3ntl_A 279 PKITLLVGHDSNIASLLTALD---FKP---YQL---HD----QQERT---PIGGKIVFQRWHDK 326 (398)
T ss_dssp CSEEEEEECHHHHHHHHHHTT---BCC---CCC---TT----CSCSS---CTTCEEEEEEEEET
T ss_pred ceEEEEEechhhHHHHHHHhC---CCC---ccC---CC----cCCCC---CccceeeEEEEEec
Confidence 357999999999999988873 321 100 00 00122 37899999999974
No 86
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=81.65 E-value=0.31 Score=54.51 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=35.2
Q ss_pred cCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC------CC--ceeEEEE
Q 002403 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT------GG--TDVKVYT 215 (927)
Q Consensus 144 ~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~------~G--~DIKvyt 215 (927)
+.++|+||..|+ +|.|.. |++....-...++ .....||+|+||.. +| -|||+||
T Consensus 147 ~~~wI~KP~~~s-----------rG~GI~-l~~~~~~i~~~~~------~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yv 208 (380)
T 3tig_A 147 GNVWIAKSSSGA-----------KGEGIL-ISSDATELLDFID------NQGQVHVIQKYLESPLLLEPGHRKFDIRSWV 208 (380)
T ss_dssp CCCEEEEESCC---------------CCB-CCSCSHHHHHHHH------HHTSCEEEEECCSSBCCBTTTTBCEEEEEEE
T ss_pred CCeEEEeCCccC-----------CCCCEE-EeCCHHHHHHHHh------ccCCcEEEEecccCceeecCCCceeEEEEEE
Confidence 479999999998 888874 7765421111011 13568999999975 34 5999998
Q ss_pred EC
Q 002403 216 VG 217 (927)
Q Consensus 216 VG 217 (927)
+-
T Consensus 209 lv 210 (380)
T 3tig_A 209 LV 210 (380)
T ss_dssp EE
T ss_pred EE
Confidence 83
No 87
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=80.96 E-value=0.85 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.5
Q ss_pred CccceEEEEEEEEcCCCCcccc
Q 002403 352 QSEELRCVIAVMRHGDRTPKQK 373 (927)
Q Consensus 352 ~~~eLr~vvaViRHgDRTPKQK 373 (927)
...+|+.|+.++|||||||..+
T Consensus 12 ~~~~l~~v~~~~RHG~R~P~~~ 33 (418)
T 2wnh_A 12 RDWQLEKVVELSRHGIRPPTAG 33 (418)
T ss_dssp CCEEEEEEEEEEECCCCCCCHH
T ss_pred CCCEEEEEEEEEeCCCCCCCCC
Confidence 4579999999999999999764
No 88
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=68.96 E-value=4.2 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=35.0
Q ss_pred cCcceEEeeccCC-------CC------ceeEEEEECCc----eeEEEeecCCCCCCceeecCCCCce
Q 002403 194 REGSYIYEEFMPT-------GG------TDVKVYTVGPE----YAHAEARKSPVVDGVVMRNPDGKEV 244 (927)
Q Consensus 194 ~~gsyIyeEFi~~-------~G------~DIKvytVG~~----~vhAe~RkSPv~dG~vrrN~~gke~ 244 (927)
....||+||+++- +| .|+|+|++.++ +..+-+|-|+..+..+-.+..||+.
T Consensus 399 ~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~~~v~pGgltRva~~~~~~vvn~s~Gggs 466 (474)
T 3n6x_A 399 NPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVALREGSLVVNSSQGGGT 466 (474)
T ss_dssp SGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEEECSCCEEEEECSTTCCCCSTTSSEEE
T ss_pred CCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCceEEecceEEEEecCCCCceEECCCCCcc
Confidence 3567999999972 23 59999999555 6788899997333334444445554
No 89
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Probab=62.36 E-value=3.2 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.5
Q ss_pred CccceEEEEEEEEcCCCCccc
Q 002403 352 QSEELRCVIAVMRHGDRTPKQ 372 (927)
Q Consensus 352 ~~~eLr~vvaViRHgDRTPKQ 372 (927)
...+|+-|..|.|||+|||-.
T Consensus 57 ~~~~l~~V~~l~RHG~R~P~~ 77 (458)
T 2gfi_A 57 DQCTLEQVQLFSRHGERYPST 77 (458)
T ss_dssp TTEEEEEEEEEEECCSBCCCH
T ss_pred CCceEEEEeeeeccccCCCCc
Confidence 457999999999999999954
No 90
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=61.28 E-value=3.5 Score=45.92 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.9
Q ss_pred CccceEEEEEEEEcCCCCcc
Q 002403 352 QSEELRCVIAVMRHGDRTPK 371 (927)
Q Consensus 352 ~~~eLr~vvaViRHgDRTPK 371 (927)
...+|+=|..|.|||+|||-
T Consensus 45 ~g~~l~~V~vl~RHG~R~P~ 64 (442)
T 1qwo_A 45 KDCRITLVQVLSRHGARYPT 64 (442)
T ss_dssp TTEEEEEEEEEEECCCBCCC
T ss_pred CCCeeEEEEEEecCcCcCCC
Confidence 45799999999999999994
No 91
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=60.23 E-value=9.2 Score=45.62 Aligned_cols=66 Identities=14% Similarity=0.333 Sum_probs=32.9
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC---C--ceeEEEEECCc
Q 002403 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG---G--TDVKVYTVGPE 219 (927)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrki~n~sS~~~~~~~~~r~~gsyIyeEFi~~~---G--~DIKvytVG~~ 219 (927)
.+|.||+.| +..||.|+-+ ++. .+.... -.| .++.||||||++-. | .=|=+|+||++
T Consensus 544 ~yV~KPi~gReG~nV~I~~~----~~~-~~~~~~----g~y--------~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~ 606 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSG----DGV-VHAESG----GKY--------GKRNMIYQQLFELKKQDDYYAIIGGWMIGDA 606 (652)
T ss_dssp CEEEEECC--------------------------------------------CEEEEECCC--CBTTBCCEEEEEEETTE
T ss_pred CeEeccCCCCCCCCEEEEcC----Cch-hhhhcc----ccc--------CCCCeEEEecccCCccCCcceEEEEEEECCE
Confidence 599999999 7666666531 111 011111 111 35779999999752 1 44678999999
Q ss_pred eeEEEeecC
Q 002403 220 YAHAEARKS 228 (927)
Q Consensus 220 ~vhAe~RkS 228 (927)
++..-.|.+
T Consensus 607 ~aGi~iR~~ 615 (652)
T 2vob_A 607 FSGTGIRED 615 (652)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEecC
Confidence 999999986
No 92
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2
Probab=56.87 E-value=4.6 Score=45.61 Aligned_cols=21 Identities=48% Similarity=0.650 Sum_probs=18.6
Q ss_pred CccceEEEEEEEEcCCCCccc
Q 002403 352 QSEELRCVIAVMRHGDRTPKQ 372 (927)
Q Consensus 352 ~~~eLr~vvaViRHgDRTPKQ 372 (927)
...+|+=|..|.|||+|+|-.
T Consensus 50 ~g~~l~~V~vl~RHG~R~P~~ 70 (460)
T 1qfx_A 50 TSCEVDQVIMVKRHGERYPSP 70 (460)
T ss_dssp TTEEEEEEEEEEECCSBCCCH
T ss_pred CCCeEEEEEEEeccCcCCCCc
Confidence 457999999999999999954
No 93
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=47.65 E-value=9.5 Score=36.47 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=19.4
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||++++.++
T Consensus 47 ~i~sSpl~Ra~qTA~~i~~~~ 67 (161)
T 1ujc_A 47 RVLVSPFLRAEQTLEEVGDCL 67 (161)
T ss_dssp EEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 599999999999999999875
No 94
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=46.47 E-value=11 Score=36.60 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||++++..+
T Consensus 57 ~i~sSpl~Ra~qTA~~i~~~~ 77 (173)
T 2rfl_A 57 LILSSTAARCRQTTQAWQRAF 77 (173)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhc
Confidence 599999999999999999875
No 95
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=40.54 E-value=13 Score=36.65 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 57 ~i~sSpl~Ra~qTA~~i~~~~ 77 (202)
T 3mxo_A 57 KIVHSSMTRAIETTDIISRHL 77 (202)
T ss_dssp EEEEESSHHHHHHHHHHHHTS
T ss_pred EEEECChHHHHHHHHHHHHhC
Confidence 599999999999999999876
No 96
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=37.92 E-value=16 Score=36.76 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~~ 71 (240)
T 1qhf_A 51 VLYTSKLSRAIQTANIALEKA 71 (240)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 499999999999999999876
No 97
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=37.86 E-value=15 Score=36.78 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 71 ~i~sSpl~Ra~qTA~~i~~~~ 91 (214)
T 3eoz_A 71 VIYHSDMIRAKETANIISKYF 91 (214)
T ss_dssp EEEECSSHHHHHHHHHHHTTC
T ss_pred EEEECCcHHHHHHHHHHHHHC
Confidence 499999999999999999876
No 98
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=37.75 E-value=16 Score=36.50 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~~ 71 (213)
T 3hjg_A 51 GIISSPLSRCHDLAQILAEQQ 71 (213)
T ss_dssp CEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHhcc
Confidence 499999999999999999764
No 99
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=37.61 E-value=17 Score=37.04 Aligned_cols=21 Identities=24% Similarity=0.127 Sum_probs=19.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.||+.||+++++++
T Consensus 62 ~i~sSpl~Ra~qTA~~i~~~~ 82 (258)
T 3kkk_A 62 VVYTSVLKRAICTAWNVLKTA 82 (258)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECchHHHHHHHHHHHHhc
Confidence 599999999999999999987
No 100
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=37.44 E-value=16 Score=36.16 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 58 ~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 58 IAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999886
No 101
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=37.23 E-value=17 Score=37.03 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 60 ~i~sSpl~Ra~qTA~~i~~~~ 80 (257)
T 3gp3_A 60 IAYTSVLKRAIRTLWHVQDQM 80 (257)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHhc
Confidence 599999999999999999987
No 102
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=34.23 E-value=19 Score=37.16 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.||+.||+++++++
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (265)
T 3e9c_A 53 NVFVSNLQRAIQTAEIILGNN 73 (265)
T ss_dssp EEEECSSHHHHHHHHHHHHTC
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999986
No 103
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=33.71 E-value=21 Score=36.56 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 84 ~i~sSpl~Ra~qTA~~i~~~~ 104 (263)
T 3c7t_A 84 HVYASPALRCVETAQGFLDGL 104 (263)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 599999999999999999876
No 104
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=33.58 E-value=19 Score=35.63 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||++++.++
T Consensus 50 ~i~sSpl~Ra~qTA~~i~~~~ 70 (207)
T 1h2e_A 50 AIYTSTSGRALETAEIVRGGR 70 (207)
T ss_dssp EEEECSSHHHHHHHHHHHTTC
T ss_pred EEEECccHHHHHHHHHHHhcC
Confidence 599999999999999998754
No 105
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=33.46 E-value=21 Score=36.11 Aligned_cols=21 Identities=19% Similarity=0.021 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (249)
T 1e58_A 53 FAYTSVLKRAIHTLWNVLDEL 73 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999876
No 106
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=33.44 E-value=21 Score=36.53 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||++++.++
T Consensus 82 ~v~sSpl~Ra~qTA~~i~~~~ 102 (264)
T 3mbk_A 82 HVYCSPSLRCVQTAHNILKGL 102 (264)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHHh
Confidence 499999999999999999987
No 107
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=33.33 E-value=21 Score=35.76 Aligned_cols=22 Identities=36% Similarity=0.308 Sum_probs=20.1
Q ss_pred eEeecCCchHHHHHHHHHhhhc
Q 002403 522 KIYSSDEGRVQMSAAAFAKGLL 543 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~L 543 (927)
.||||+-.|++.||++++.++-
T Consensus 62 ~i~sSpl~Ra~qTA~~i~~~~~ 83 (237)
T 3r7a_A 62 NAYSSDSGRAIETANLVLKYSE 83 (237)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT
T ss_pred EEEECCcHHHHHHHHHHHHhcc
Confidence 4999999999999999999863
No 108
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=33.21 E-value=17 Score=36.76 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++.+
T Consensus 67 ~i~sSpl~Ra~qTA~~i~~~~ 87 (219)
T 2qni_A 67 RIVSSAETKAIETAHMLAETS 87 (219)
T ss_dssp EEEECSSHHHHHHHHHHTTTT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999998754
No 109
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=32.56 E-value=22 Score=36.48 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+=.|++.||+++++++
T Consensus 91 ~i~sSpl~Ra~qTA~~i~~~~ 111 (273)
T 3d4i_A 91 AVFASPALRCVQTAKHILEEL 111 (273)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECchHHHHHHHHHHHHHc
Confidence 499999999999999999876
No 110
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=32.53 E-value=22 Score=36.57 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 54 ~i~sSpl~Ra~qTA~~i~~~~ 74 (262)
T 1yfk_A 54 ICFTSVQKRAIRTLWTVLDAI 74 (262)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999876
No 111
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=31.76 E-value=23 Score=36.55 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 71 ~i~sSpl~Ra~qTA~~i~~~~ 91 (267)
T 3d8h_A 71 VVYTSVLKRAIMTTWTVLKEL 91 (267)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 499999999999999999876
No 112
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=30.79 E-value=25 Score=36.33 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 78 ~i~sSpl~Ra~qTA~~i~~~~ 98 (268)
T 4eo9_A 78 VLYTSLLRRAITTAHLALDTA 98 (268)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999876
No 113
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=30.63 E-value=25 Score=36.25 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 54 ~i~sSpl~Ra~qTA~~i~~~~ 74 (267)
T 2hhj_A 54 LVFTSVLNRSIHTAWLILEEL 74 (267)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 499999999999999999876
No 114
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=30.05 E-value=26 Score=36.24 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=19.7
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||+++++++
T Consensus 78 ~v~sSpl~Ra~qTA~~i~~~~ 98 (274)
T 4emb_A 78 IAFSSLLSRANDTLNIILREL 98 (274)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 499999999999999999886
No 115
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=29.53 E-value=27 Score=34.25 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKG 541 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (927)
.||||.-.|++.||+++++.
T Consensus 49 ~i~sSp~~Ra~qTa~~l~~~ 68 (172)
T 3f2i_A 49 LIVTSPLIRARQTAEILLAS 68 (172)
T ss_dssp EEEECSSHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHhc
Confidence 59999999999999999987
No 116
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=26.95 E-value=28 Score=36.03 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||.-.|++.||++++.++
T Consensus 58 ~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 58 HAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp EEEECSSHHHHHHHHHHHTTC
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999886
No 117
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=23.90 E-value=39 Score=35.16 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.4
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
.||||+-.|++.||++++.++
T Consensus 55 ~i~sSpl~Ra~qTA~~i~~~~ 75 (265)
T 1rii_A 55 VLYTSLLRRAITTAHLALDSA 75 (265)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 599999999999999999875
No 118
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=23.78 E-value=30 Score=35.52 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 002403 522 KIYSSDEGRVQMSAAAFAKGL 542 (927)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (927)
+||||.-.|++.||+++++++
T Consensus 61 ~i~sSpl~Ra~qTA~~i~~~~ 81 (265)
T 3f3k_A 61 YIFTSPRLRARQTVDLVLKPL 81 (265)
T ss_dssp EEEECSSHHHHHHHHHHTTTS
T ss_pred EEEECCHHHHHHHHHHHHHhc
Confidence 599999999999999998765
No 119
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=22.80 E-value=1.2e+02 Score=33.35 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=32.2
Q ss_pred eeeEEEeecchhHHHHHHHHHhcCCccccccccchhhhhhhhhhcCCCCCcccccceEEEeecC
Q 002403 858 VRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 921 (927)
Q Consensus 858 VRTRlYFTSESHIhSLLNvlr~~~l~~~~~~~~~~i~~~a~~~l~~i~ELdYLSqIvf~lyE~~ 921 (927)
.|-.+||+-.+-|.+||+.| |+...+-+ +... .-|-|.|+||+|++.
T Consensus 295 ~K~~~ysgHDttIa~ll~aL---g~~~~~P~-----------~~~~---~P~~s~l~fEl~~~~ 341 (410)
T 1dkq_A 295 TSVLFIAGHDTNLANLGGAL---ELNWTLPG-----------QPDN---TPPGGELVFERWRRL 341 (410)
T ss_dssp CSEEEEEECHHHHHHHHHHH---TCCCCBTT-----------BSSS---SCTTCEEEEEEEEET
T ss_pred ceEEEEeccHHHHHHHHHHh---CCCccCCC-----------CCCC---CCcccEEEEEEeecC
Confidence 35799999999999999998 34211100 0012 238999999999973
Done!