RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002403
(927 letters)
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 49.7 bits (117), Expect = 3e-07
Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 37/231 (16%)
Query: 86 NELEPQHLLHDRRKVYEQLEKY--GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143
N LE + D+ V+ Q+ + ++ L+ + +
Sbjct: 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTL-----------P 49
Query: 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEF 203
P V K H +G G ++ +F V +Y E
Sbjct: 50 TFPVVVKIGHA-----------HSGMGKVKVENHY-----DFQDIASVVALTQTYATAEP 93
Query: 204 MPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI 263
D++V +G Y G N + + + + +
Sbjct: 94 FIDAKYDIRVQKIGNNYKAYMRTSIS---GNWKTNTGSAMLEQIAMSDRYKLWVDACSEM 150
Query: 264 AFRQAVCGFDLLRCE-GRSYVCDVNGWSFVKNSYKYYDD----AACVLRKM 309
+C + + G+ Y+ +V S +D V+ KM
Sbjct: 151 FGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 201
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 45.7 bits (107), Expect = 6e-06
Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 28/184 (15%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163
L K G+P P+ AL +E +E F P V KPV G
Sbjct: 8 LAKAGLPQPKTALATDR---EEALRLMEA----------FGYPVVLKPVIGSWGR----- 49
Query: 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA 223
+ +V + + +E++ G D++V+ VG A
Sbjct: 50 ------LLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAA 103
Query: 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYV 283
R+S + N LT +++ + A V DL E V
Sbjct: 104 IYRRSA----HWITNTARGGQAENCPLTEEVARLSVKAAEAVGGGVVAVDLFESERGLLV 159
Query: 284 CDVN 287
+VN
Sbjct: 160 NEVN 163
>d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 37.3 bits (85), Expect = 0.007
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 508 TGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLL----------DLEGQLTPILVSL 556
G+++ + + Y++ R +A F G + G + P +
Sbjct: 71 QGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPV 130
Query: 557 VSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDC 600
++ DS+ A++E E +K +L + + K+++ S C
Sbjct: 131 ITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPAC 174
Score = 30.8 bits (68), Expect = 0.90
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 355 ELRCVIAVMRHGDRTPKQK 373
+L+ V+ + R R P
Sbjct: 8 QLQQVLMMSRANLRAPLAN 26
>d1dkla_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Escherichia coli [TaxId: 562]}
Length = 409
Score = 36.5 bits (83), Expect = 0.015
Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 2/158 (1%)
Query: 509 GLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSM-LDG 566
GLL + + I + + R + + AFA GL S D
Sbjct: 69 GLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLK 128
Query: 567 LDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKK 626
++ + + + + + P + L + +
Sbjct: 129 TGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCS 188
Query: 627 VTEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTN 664
+T+ + K ++++ T + + L +
Sbjct: 189 LTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQ 226
Score = 30.8 bits (68), Expect = 0.81
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 355 ELRCVIAVMRHGDRTPKQ 372
+L V+ V RHG R P +
Sbjct: 6 KLESVVIVSRHGVRAPTK 23
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 130
Score = 31.0 bits (70), Expect = 0.25
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 195 EGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVR 245
+ + I E+ G + P+Y + P ++ + + N + +EV
Sbjct: 1 KATMIIEKDFKIAGVALHPVISSPKYDSKDFTDVPYLESIAVYNEEKEEVT 51
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 31.9 bits (71), Expect = 0.27
Identities = 25/189 (13%), Positives = 48/189 (25%), Gaps = 20/189 (10%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163
++KYGI R+ + +EL I++ P+V K ++
Sbjct: 9 MKKYGIRTARFEVAET---PEELREKIKKFSP----------PYVIKADGLARGKGVLIL 55
Query: 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA 223
S K +G V G + + +Y
Sbjct: 56 DSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRL 115
Query: 224 EARKSPVVDGVVMRN-----PDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE 278
G + P + L + +E + L+ +
Sbjct: 116 MDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGY--AYRGFLYLGLMLHD 173
Query: 279 GRSYVCDVN 287
G Y+ + N
Sbjct: 174 GDPYILEYN 182
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 31.3 bits (69), Expect = 0.41
Identities = 25/198 (12%), Positives = 52/198 (26%), Gaps = 28/198 (14%)
Query: 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155
D+ Y + GI P + ++N++ D + F P KP
Sbjct: 1 DKSLTYIVAKNAGIATPAFWVINKD------DRPVAAT---------FTYPVFVKPARSG 45
Query: 156 DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215
+ S+ + + + S G + V
Sbjct: 46 SSFGVKKV-------NSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVG 98
Query: 216 VGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLL 275
+ + + + + P L+ E+ +E + + L
Sbjct: 99 EVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLA 158
Query: 276 RCE------GRSYVCDVN 287
R + GR + +VN
Sbjct: 159 RVDMFLQDNGRIVLNEVN 176
>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 342
Score = 31.4 bits (70), Expect = 0.50
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 355 ELRCVIAVMRHGDRTP 370
EL+ V V RHGDR+P
Sbjct: 2 ELKFVTLVFRHGDRSP 17
Score = 30.6 bits (68), Expect = 0.97
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 513 LHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548
L+ +Y + I S+D R MSA L EG
Sbjct: 61 LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGV 97
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 30.9 bits (69), Expect = 0.61
Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 20/217 (9%)
Query: 420 RSRPGRESDSEAEDFEHSKKRIICVAIL---HLGGQFEKFFNVQDVLLSIQCHLLLANLV 476
S PG E + + C + L + +DV ++ L+ +
Sbjct: 59 ESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASI 118
Query: 477 SGQFIDFLIEQFYQDNGVNEIAYWWG-------SHSEGTGLLRLHSTYRHDLKIYSSDEG 529
+ + + D A + + + L L G
Sbjct: 119 LSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLG 178
Query: 530 RVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGS 589
R A + LL ++G P L LV+ L L + + AR+ + GS
Sbjct: 179 RCVGHALEVEEALLCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGS 238
Query: 590 ------KMIHSNGSSDCPWMADGV--GLPPNASELLP 618
+M+ + G P +A + G P +LLP
Sbjct: 239 ALGRFERMLAAQGVD--PGLARALCSGSPAERRQLLP 273
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 30.0 bits (66), Expect = 1.0
Identities = 20/191 (10%), Positives = 42/191 (21%), Gaps = 22/191 (11%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163
L GI +Y +V+ E I E K + +
Sbjct: 9 LTVNGIRNTKYIVVDPESANNWSWDKIVAE---------LGNIVFVKAANQGSSVGISRV 59
Query: 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA 223
++ + V E G V +G
Sbjct: 60 TNAEEYTEALSDSFQYDYKVLIEEAVNG------ARELEVGVIGNDQPLVSEIGAHTVPN 113
Query: 224 EARKSPVVDGVVMRNPDGKEVRYP-VLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---- 278
+ D + L+P + +++ + + + R +
Sbjct: 114 QGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLD 173
Query: 279 --GRSYVCDVN 287
Y+ + N
Sbjct: 174 ENNVPYLGEPN 184
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 29.6 bits (66), Expect = 1.6
Identities = 33/270 (12%), Positives = 66/270 (24%), Gaps = 56/270 (20%)
Query: 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158
+ +E+ + P A V + +E + P V + +
Sbjct: 1 RFQHAVERLKLKQPANATVTA---IEMAVEKAKEIGY----------PLVVRASYV---- 43
Query: 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP 218
G M+ ++ + R + + + +V V +
Sbjct: 44 -------LGGRAMEIVYDEADLRRYFQTAV---SVSNDAPVLLDHFLDDAVEVDVDAICD 93
Query: 219 EYAHAEARKSPVVDGVVMRNPDGKEV--------RYPVLLTPNEKQMAREVCIAFRQAV- 269
V+ G +M + + V L+ + + R+ +
Sbjct: 94 GEM--------VLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQ 145
Query: 270 ----CGFDLLRCEGRSYVCDVN-----GWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSS 320
Y+ +VN FV + A V ++
Sbjct: 146 VRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGV--PLAKVAARVMAGKSLAEQGV 203
Query: 321 AIPPILPWK-VNEPVQPTEGLTRQGSGLGT 349
I P+ V E V P LG
Sbjct: 204 TKEVIPPYYSVKEVVLPFNKFPGVDPLLGP 233
>d1qwoa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 435
Score = 29.5 bits (65), Expect = 2.1
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 512 RLHSTYRH-----DLKIYSSDEGRVQMSAAAFAKGLLDLEG 547
+ + Y+ I +S RV S F +G +
Sbjct: 112 KFYQRYKALARSVVPFIRASGSDRVIASGEKFIEGFQQAKL 152
Score = 28.7 bits (63), Expect = 3.6
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 355 ELRCVIAVMRHGDRTP--KQKVKLKVTEEKLLNLMLKYNG 392
+ V + RHG R P + K K + + G
Sbjct: 42 RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKG 81
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 28.7 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 657 AKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERK 700
+ L + RIA G+P G L Y L R L +
Sbjct: 155 QRLLEPLGAAISRIAYGVPVGGS---LEYTDEVTLGRALTGRQT 195
>d1ihpa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus ficuum [TaxId: 5058]}
Length = 438
Score = 28.3 bits (62), Expect = 4.6
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 355 ELRCVIAVMRHGDRTP--KQKVKLKVTEEKLLNLMLKYNG 392
+ + RHG R P + K E++ ++G
Sbjct: 43 RVTFAQVLSRHGARYPTDSKGKKYSALIEEIQQNATTFDG 82
Score = 28.3 bits (62), Expect = 5.3
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 512 RLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548
R S R+ I SS RV S F +G + +
Sbjct: 117 RYESLTRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLK 154
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 27.5 bits (61), Expect = 7.5
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 568 DNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCP 601
+N ME++ + +++G IH + S C
Sbjct: 97 ENVDAAMEKSVELVKAYVRAGFSKIHLDASMSCA 130
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 27.2 bits (59), Expect = 9.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 96 DRRKVYEQLEKYGIPVPRYALVNREVPY 123
DR + L+K GI VP ++
Sbjct: 1 DRNLERKWLKKAGIRVPEVYEDPDDIEK 28
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 224
Score = 27.1 bits (59), Expect = 9.6
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 5/98 (5%)
Query: 677 GSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKV 736
G+ + E +ER+ + L N H+
Sbjct: 126 GTSSLDGVAIATAVAEA--LHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVF 183
Query: 737 AQLLADGVIPNEYGINPKQKLKIGSKI---ARRLLGKL 771
+ G YG+ + ++ AR LL +
Sbjct: 184 YHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,526,096
Number of extensions: 173859
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 32
Length of query: 927
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 833
Effective length of database: 1,116,976
Effective search space: 930441008
Effective search space used: 930441008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)