Query 002404
Match_columns 927
No_of_seqs 178 out of 296
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 23:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10408 Ufd2P_core: Ubiquitin 100.0 3E-146 6E-151 1316.0 55.3 581 266-911 1-603 (629)
2 COG5113 UFD2 Ubiquitin fusion 100.0 1E-138 3E-143 1155.7 51.2 790 11-908 3-807 (929)
3 KOG2042 Ubiquitin fusion degra 100.0 9E-132 2E-136 1173.3 46.1 767 41-912 53-829 (943)
4 KOG4692 Predicted E3 ubiquitin 96.4 0.47 1E-05 52.8 20.5 279 575-884 2-324 (489)
5 PF11672 DUF3268: Protein of u 28.7 89 0.0019 29.7 4.4 42 313-354 58-100 (102)
6 KOG4253 Tryptophan-rich basic 23.4 3E+02 0.0064 28.1 7.1 104 500-615 44-147 (175)
7 PF15290 Syntaphilin: Golgi-lo 22.3 3.2E+02 0.007 30.4 7.8 66 495-561 77-144 (305)
8 PF04420 CHD5: CHD5-like prote 22.2 1.2E+02 0.0026 31.0 4.4 59 496-554 36-94 (161)
9 PF09454 Vps23_core: Vps23 cor 21.2 3.1E+02 0.0067 23.8 6.0 30 724-764 8-37 (65)
10 PF03790 KNOX1: KNOX1 domain ; 17.3 1.2E+02 0.0026 24.6 2.4 28 671-703 4-31 (45)
No 1
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=2.7e-146 Score=1315.99 Aligned_cols=581 Identities=42% Similarity=0.770 Sum_probs=493.5
Q ss_pred cccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHH
Q 002404 266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAE 344 (927)
Q Consensus 266 LGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~ 344 (927)
|||||++|++|++ +|.+++.||.++.+++++++++++.+||..++.+++.||+|+++||| ++++|+++|+|||.
T Consensus 1 LGp~l~~S~~~~~-----~~~~~~~~F~~~~~~~~~~~~~~~~~lr~~l~~~~~~l~~i~~~LLr~s~~sR~~~L~w~a~ 75 (629)
T PF10408_consen 1 LGPFLSLSPLPDD-----QPEVAEQFFSNPSKRNQQDVESSISSLRQELQNIQDQLHQIFKSLLRASPESRERVLSWFAQ 75 (629)
T ss_dssp THHHHT--TTS--------HHHHHHHTTT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCCCeecCCCCCC-----ccHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Confidence 8999999999988 48999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHhchhhhcc--ccCCCCcCChhhHHHHHHHHHHhhhhhcCCCccccCccCccC----ccc--CCCcCCCCcccccCCh
Q 002404 345 VINRNSSRAHI--QVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKY----VFY--SSRLDLRSLTALHASS 416 (927)
Q Consensus 345 vi~~N~~R~k~--~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y----~~~--~~~id~~~eTri~a~~ 416 (927)
|++.|++|+|| ++++..+||||||+|+++||+|||+||+|+..+|++||||+| +.+ ++++|+++|||++++.
T Consensus 76 ~l~~N~~R~k~~~~~~~~~~aSDGFmlNl~~VLl~L~~Pf~~~~~~K~~kID~~Y~~~~~~~~~~~~vd~~~eT~l~~~~ 155 (629)
T PF10408_consen 76 ILNANAKRAKMWLQVDPRTVASDGFMLNLTAVLLRLCQPFMDPSFSKIDKIDPDYCAHPLLRPRNSRVDISEETRLNATE 155 (629)
T ss_dssp HHHT-GGGGSS--S--GGGS--HHHHHHHHHHHHHHHGGGGSTT-TTGGGS-TTT-----TSS--SSS--TT--BSSB-H
T ss_pred HHHhchhhhhhhhccccccCCCcHHHHHHHHHHHHHHHhhhhhhhhhHhhcCcchhhhhhccccccccCcccccccCCCh
Confidence 99999999999 999999999999999999999999999999999999999999 455 7899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhchH
Q 002404 417 EEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLL 496 (927)
Q Consensus 417 ee~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFiTecFFLT~~~lhlg~~ 496 (927)
+++++|++... ..+++||||||||||++++|||+.
T Consensus 156 ~e~~~~~~~~~---------------------------------------------~~~~~nFiTe~FFLT~~a~hlg~~ 190 (629)
T PF10408_consen 156 EESEEWYEDLP---------------------------------------------NPGPPNFITECFFLTLRALHLGLL 190 (629)
T ss_dssp HHHHHHHHHCT---------------------------------------------TSTS--HHHHHHHHHHHHHHHTHH
T ss_pred hHHhhhhcccc---------------------------------------------cCCCCCchHHHHHHHHHHHHHhHH
Confidence 99999997542 223489999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHH
Q 002404 497 KAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVW 576 (927)
Q Consensus 497 ~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~w 576 (927)
|++++|+++.|+++++++.++++++. ..+++++++++.+.+.++|++| +|+||++++++++|+++++.|
T Consensus 191 ~~~~~~~~~~r~l~~lq~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~-~L~~p~~~~~~~~F~~~~~~w 259 (629)
T PF10408_consen 191 PAIQRYKRLLRELRRLQRELEELEAS----------AQLKRLKEQLDKLMSEKLSLEA-VLLDPDFLSRCLQFYNFVAQW 259 (629)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987632 5678999999999999999999 799999999999999999999
Q ss_pred HHHHhc---------CCCCCCCCCCCccccccchHHHHhHHHHHHHHhhc---CccccccchHHHHHHHHHHhCCCCCcc
Q 002404 577 LVDLVG---------GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI---PKALDGVLLDDFMNFIIMFMASPKYIR 644 (927)
Q Consensus 577 L~rl~~---------~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~---p~~l~~~~~~~li~f~i~~l~~~~~ik 644 (927)
|+++++ +.++|||+++|+.|++||||+||||+||+.|++|+ |..+.+..++++++|||+||++|+||+
T Consensus 260 L~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~~~~~~l~~~~~~~l~~f~i~fm~s~~~ik 339 (629)
T PF10408_consen 260 LLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFNNSPDLLSSQDLDELVTFCITFMGSPEYIK 339 (629)
T ss_dssp HHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTSTT-TTTT-T-THHHHHHHHHHHHH-TTS--
T ss_pred HHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhcCChhhhhhhhHHHHHHHHHHHhCChhhcC
Confidence 999993 36789999999999999999999999999999998 888899999999999999999999999
Q ss_pred ChhhhhhHHHHHHhhcCCCC-CCcchhHHhhhhccchHHHHHHHHHHHhHhhhccCCCcccccccchhhhHHHHHHHHhC
Q 002404 645 NPYLRSKMVEVLNCWMPRRS-GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQ 723 (927)
Q Consensus 645 NPhLraklvevL~~~~p~~~-~~~~~~~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~~Il~~LW~ 723 (927)
|||||||+||+|+.++|... +.++.+.++|++||++++||+||||+||||||+||+|+|||||||+||+|+.||++||+
T Consensus 340 NP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~~~qfydKFn~R~~i~~il~~lw~ 419 (629)
T PF10408_consen 340 NPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGASTQFYDKFNIRYHISQILKYLWK 419 (629)
T ss_dssp -HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCccchhcccchhhHHHHHHHHcC
Confidence 99999999999999988776 55677888999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHhhhhh
Q 002404 724 VPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENII 803 (927)
Q Consensus 724 ~~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~~~er~~ 803 (927)
+|.||++|+++++++ +++|+|||||||||+||||||||++|++||++|.+++|.++|+++++|+|+++++.++++||+|
T Consensus 420 ~~~~r~~~~~~~~~~-~~~F~rFvn~liND~~~llDE~l~~L~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~ 498 (629)
T PF10408_consen 420 NPEYREQFIKEAKEN-PPLFVRFVNMLINDTTFLLDESLSKLKEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQA 498 (629)
T ss_dssp -HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999985 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCCCcCCccccCCccCCCChHHHHHHHHHHHHhcc
Q 002404 804 RIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLA 883 (927)
Q Consensus 804 rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~LL~~i~~IYlnL~ 883 (927)
|||++||++|++||.+||+++|+||++||||||||+||||||++||||||++||||||++|||+||+||.+||+||+||+
T Consensus 499 rs~~~l~~~t~~~l~~lt~~~~~~Fl~~elv~RlA~MLn~~L~~L~Gpk~~~LkVk~~~~y~F~P~~ll~~i~~iy~~l~ 578 (629)
T PF10408_consen 499 RSYLQLANETLKMLNYLTSEIPEPFLRPELVDRLAAMLNYNLDQLVGPKCSELKVKNPEKYGFDPKELLSQIVDIYLNLS 578 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHcCCchhcccCCChhhcCCcHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccchhhHhhhhcCCCChhhhHHHhh
Q 002404 884 RGDTQNLFPAAISSDGRSYNEQVSVISY 911 (927)
Q Consensus 884 ~~d~~~~F~~AVa~DgRSy~~elf~i~~ 911 (927)
+. ++||+|||+|||||++|+|....
T Consensus 579 ~~---~~F~~ava~D~Rsy~~~lf~~a~ 603 (629)
T PF10408_consen 579 DS---DKFVQAVANDGRSYSPELFEKAV 603 (629)
T ss_dssp T----HHHHHHHHH-TTT--HHHHHHHH
T ss_pred Cc---hHHHHHHHhCCCCCCHHHHHHHH
Confidence 64 37999999999999999976553
No 2
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-138 Score=1155.73 Aligned_cols=790 Identities=22% Similarity=0.311 Sum_probs=695.2
Q ss_pred HHHHHHHHHHhheeeccCCcCCCCCCeeehhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHHHH
Q 002404 11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRA 90 (927)
Q Consensus 11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~yL~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R~ 90 (927)
.+|.+++-..+++||.+|+ +.+-++| +.++...+|. .|+.+.+|.+|+.+|+... .++|.||.+||+-.
T Consensus 3 ~~~M~~ie~~~l~it~~p~----D~~~y~l--fk~~e~~~gS--~l~~n~~d~~LL~~l~~~~---nn~fsYl~~s~~fl 71 (929)
T COG5113 3 YPGMNRIELYELFITGMPA----DMDPYEL--FKEAECIRGS--YLTNNSSDNILLTLLPRYK---NNTFSYLQESAKFL 71 (929)
T ss_pred CcccchhhhhhhhcccCcc----ccchhhh--cchhhccccC--ccccccHHHHHHHHccccC---CCchHHHHHHHHHH
Confidence 4799999889999999998 4455777 4455545565 4677799999999999864 88999999999944
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCCC
Q 002404 91 HDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDG 170 (927)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~ 170 (927)
.+.++++.+ .+.....+..-++.|..++++|+|.++.+||-|..... .++.-+...+
T Consensus 72 ~q~~kri~k--n~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~FN~e~i---------------~~ieg~~~~~------ 128 (929)
T COG5113 72 IQTIKRIVK--NPEMAGSAHSPVALIPLLTNTYGGSVFDVMECFNSEKI---------------SEIEGMARKM------ 128 (929)
T ss_pred HHHHHHhcC--CccccccccchHHHHHHHHhhccceEeehHhhcchhHH---------------HHHHHHHHhc------
Confidence 444444433 23333445668899999999999999999999933211 1111122211
Q ss_pred CCCCCCCCCCCChHHHHHHHHh--hccCChHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHhhCChhHHHHhhcCCCC
Q 002404 171 FGNSTSSGSQCPPGFLKEFFEE--ADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWW 248 (927)
Q Consensus 171 ~~~~~~~~~~~~~~Fl~~li~~--~~~d~l~~if~~i~~~l~~~~~~~~~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~f 248 (927)
+ +|-.|+.+++.| ++...++.+|.++++.+....+-+........++.++..|++.||||.++.+.|.|
T Consensus 129 -------~--~p~~fls~f~qr~l~e~~nld~lF~~~LE~l~~~~g~~~~dtV~~NVm~I~~~lv~~kPia~v~~k~p~~ 199 (929)
T COG5113 129 -------L--LPMIFLSSFKQRQLDEASNLDNLFTSALEALTGLHGVLEEDTVLKNVMEIYWGLVNTKPIADVILKFPIY 199 (929)
T ss_pred -------c--cHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhcccchHHHHHHHHHHHHHHHhcCccHHHHhhcCccc
Confidence 1 577999999999 46667999999999999888877666333455899999999999999999999999
Q ss_pred CCCccCCCchhhhhhcccccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002404 249 IPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLAL 328 (927)
Q Consensus 249 ~p~~~~~~G~~~E~~SlLGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~L 328 (927)
.|+. .+-+||.+|+|||+.++|++ .-+||-.+|++...|+.+.+..+..+||.+++.+++.||+|+++|
T Consensus 200 ~~t~---~p~~fe~kt~lG~i~sls~~--------~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~l 268 (929)
T COG5113 200 SGTN---FPCGFEYKTLLGFIESLSYK--------KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHSL 268 (929)
T ss_pred CCCC---CCCCCcceeecccccccchh--------hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9964 33479999999999999999 467889999998889999999999999999999999999999999
Q ss_pred hc-ChhhHHHHHHHHHHHHHhchhhhccccCCCCcCChhhHHHHHHHHHHhhhhhcCCCccccCccCccCcccCCCcCCC
Q 002404 329 LK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLR 407 (927)
Q Consensus 329 lr-~~~sRe~vL~w~a~vi~~N~~R~k~~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~~~id~~ 407 (927)
+| +.+.|+.+++|||+|+++||+|++.++......|||||.|++.||.||++||+|..++|||+||..|++ ++|||++
T Consensus 269 vr~S~~lr~~~~~yfa~v~n~nh~R~~~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~YFn-NP~vDik 347 (929)
T COG5113 269 VRSSKELRANFMKYFAKVINVNHERSKTIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIYFN-NPRVDIK 347 (929)
T ss_pred HhccHHHHHHHHHHHHHHhccchhhccccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHhhc-CCccccc
Confidence 99 789999999999999999999999999999999999999999999999999999999999999999999 7799999
Q ss_pred CcccccCChHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHH
Q 002404 408 SLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMT 487 (927)
Q Consensus 408 ~eTri~a~~ee~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFiTecFFLT 487 (927)
+|||+|+|+++++.||.+ +.++++||||+||||+
T Consensus 348 ~ETklN~d~k~~dsFy~K----------------------------------------------~Ae~s~NFISD~FFl~ 381 (929)
T COG5113 348 EETKLNVDEKSLDSFYTK----------------------------------------------PAEGSNNFISDIFFLY 381 (929)
T ss_pred cchhcchhhhhhhccccC----------------------------------------------ccccCCccchhhHHhH
Confidence 999999999999999962 2456889999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHH
Q 002404 488 ARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQG-QTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHA 566 (927)
Q Consensus 488 ~~~lhlg~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~ 566 (927)
+..+|||+++++.--+++.+.|+.++++++.-..... .-.+.++.+++.|+++.++...+...|+++ .|...++..+.
T Consensus 382 lt~~HyGv~~tf~~~ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~al~g-fl~~tsl~~~~ 460 (929)
T COG5113 382 LTKIHYGVNATFTSCEKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMSALNG-FLFMTSLFADE 460 (929)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhhhc
Confidence 9999999999999999999999988888765432111 111334678899999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHHHhcC--------CCCCCCCCCCccccccchHHHHhHHHHHHHHhhc--CccccccchHHHHHHHHHH
Q 002404 567 LSFYRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMNFIIMF 636 (927)
Q Consensus 567 ~~F~~~~~~wL~rl~~~--------~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~--p~~l~~~~~~~li~f~i~~ 636 (927)
+.|.++++.||.|+++| .++|+-+.+|.+|+++||++||++++|...+.++ ..++- ..++++++||+++
T Consensus 461 f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif~-~~L~~l~Ef~~~v 539 (929)
T COG5113 461 FPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIFK-KELEPLCEFVKIV 539 (929)
T ss_pred cchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchhh-ccccchhhhhhhh
Confidence 99999999999999987 3566777899999999999999999999999887 33333 3499999999999
Q ss_pred hCCCCCccChhhhhhHHHHHH-hhcCCCCCCcchhHHhhhhccchHHHHHHHHHHHhHhhhccCCCcccccccchhhhHH
Q 002404 637 MASPKYIRNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIA 715 (927)
Q Consensus 637 l~~~~~ikNPhLraklvevL~-~~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~ 715 (927)
+++|++||||||++||+++|+ +.+|.+..++|.+.++|...+++.++|+||||.|||.||+||+|+|||||||+||.|+
T Consensus 540 l~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqStqfydkfNirf~ic 619 (929)
T COG5113 540 LHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQSTQFYDKFNIRFIIC 619 (929)
T ss_pred cccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcccceeeeccceeehh
Confidence 999999999999999999997 5777766667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHH
Q 002404 716 ELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRL 795 (927)
Q Consensus 716 ~Il~~LW~~~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~ 795 (927)
.+++.+|+.|.|.+++.++.+.| -++||||...|+||+||||||+|.+|.++|++|.+++|....+ ...|+-+|.+..
T Consensus 620 ~~~~~~yK~Psy~~~L~~~~~tN-~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n~~e~~~elq~~ 697 (929)
T COG5113 620 MMKDFEYKQPSYSEGLSSIKDTN-LPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-NISERIGELQKS 697 (929)
T ss_pred HHHHHHhcCchhhhhhhhhhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-chhhHHHHHHHH
Confidence 99999999999999999998876 8999999999999999999999999999999999999876544 444666788999
Q ss_pred HHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCCCcCCccccCCccCCCChHHHHHHH
Q 002404 796 FHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQI 875 (927)
Q Consensus 796 l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~LL~~i 875 (927)
++.++||||++++|++++++||..++++||++|+.+|||+|||+||||||+.||||||.+||||||++|+|+||.||+.+
T Consensus 698 la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~~ 777 (929)
T COG5113 698 LAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRRM 777 (929)
T ss_pred HHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccchhhHhhhhcCCCChhhhHH
Q 002404 876 VCIYVHLARGDTQNLFPAAISSDGRSYNEQVSV 908 (927)
Q Consensus 876 ~~IYlnL~~~d~~~~F~~AVa~DgRSy~~elf~ 908 (927)
+++|+||+. +++||.|||+|||||+.++|.
T Consensus 778 ~~VYinl~~---es~FveaVA~D~rsf~~~~F~ 807 (929)
T COG5113 778 VMVYINLRS---ESKFVEAVASDKRSFDIDFFR 807 (929)
T ss_pred HHHhhhhcc---hHHHHHHHHcccccccHHHHH
Confidence 999999995 458999999999999999975
No 3
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-132 Score=1173.28 Aligned_cols=767 Identities=36% Similarity=0.568 Sum_probs=640.3
Q ss_pred hhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHH
Q 002404 41 ELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120 (927)
Q Consensus 41 ~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 120 (927)
..+..++..+|.+.+++.. |...+.-..+.. ....++.|+..||.+.....++...+++ . +. .+.
T Consensus 53 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~---------~~-~~~ 117 (943)
T KOG2042|consen 53 ELFSSDLPADGLSHRFNEA--ESDTLALCTEND-ALNILFIYLYRCKSELSQYKRKECRKPT--L---------EQ-NLK 117 (943)
T ss_pred HhccccccccCCccccchh--hhHHHHhhccch-HHHHHHHHHHHHHHHHHHHhHHHhcCcc--h---------hh-chh
Confidence 3333334444555545444 333343333322 2457788999999998766664432211 1 11 455
Q ss_pred HhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCCCCCCCCCCCCCCChHHHHHHHHhhccCChHH
Q 002404 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDP 200 (927)
Q Consensus 121 vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~Fl~~li~~~~~d~l~~ 200 (927)
++++.++...++.+..+... ... .-+....++..+. ..|...|..|+.++...++.|.++.
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~--------~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~d~l~~ 178 (943)
T KOG2042|consen 118 LAGSSFVMITLGVLAPQLRL--------QPA-SLQDISGLLELMN----------SEGFARPLLFLLEVTEHFDLDALDA 178 (943)
T ss_pred hccchheeeehhhccchhhh--------hhh-hhhhHHHHHHHhh----------hhhcccchhHHHHHhhhhhhHHHHH
Confidence 66666666565555443210 000 0111111222211 0122356689999999999999999
Q ss_pred HHHHHHHHHHHHh--hhcCccccchhHHHHHHHhhCChhHHHHhhcCCCCCCCccCCCchhhhhhcccccccccCCCCCC
Q 002404 201 ILKGLYENLRGSV--LNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDH 278 (927)
Q Consensus 201 if~~i~~~l~~~~--~~~~~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~f~p~~~~~~G~~~E~~SlLGp~l~lS~l~~~ 278 (927)
+|+|+++.+...+ .+.+....+..++.++..+++.||+|++++++|+|.|++ +|+++|+.|+|||||++|+++.+
T Consensus 179 if~~vl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~kp~a~l~~~~~~~~p~~---~g~e~~~~s~LGpfls~S~~~~~ 255 (943)
T KOG2042|consen 179 IFNPVLERLESNLDILKLNVLVLENLVLLILLYFVSTKPIADLLVKLPDFLPPP---CGREFELKSFLGPFLSISCLPAA 255 (943)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcCCCcHHHHHhhccccCCCC---CCcchhhhhhhccceeeeecccc
Confidence 9999997776444 333434457788999999999999999999999999996 79999999999999999999977
Q ss_pred ccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhcccc
Q 002404 279 AIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQV 357 (927)
Q Consensus 279 ~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~vi~~N~~R~k~~~ 357 (927)
++ .--.+|...+..+++.+. .+++..++ ....+|+|++++|+ |+++|+++|+|+|.||++|++|+++++
T Consensus 256 ~~------~~y~~~~e~s~~~~~~~~---~s~~~~~~-~~~~~~~~v~~ll~~s~etr~~~L~~~a~vi~aN~~R~~~~~ 325 (943)
T KOG2042|consen 256 PA------KRYGDFSERSRKNTSEVS---SSLLLYHQ-MDRKMLQIVKHLLRLSPETREKTLSYVANVINANDKRASIQV 325 (943)
T ss_pred ch------hhhcccchhhhcchHHHH---HHHHHHHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhcccccccccC
Confidence 42 212334444445555554 44555555 55999999999999 899999999999999999999999999
Q ss_pred CCCCcCChhhHHHHHHHHHHhhhhhcCCCccccCccCccCcccCCCcCCCCcccccCChHHHHHHHhcCCCCCCCCCCCC
Q 002404 358 EPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHF 437 (927)
Q Consensus 358 d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~~~id~~~eTri~a~~ee~~~~~~~~~p~~~~~~~~~ 437 (927)
|+..++|||||+|+++||+|||+||+|+...|+|||||+|+...++.+..++|+++++.+|+. |++
T Consensus 326 ~~~~~~sDgfm~Nl~~Vl~rls~p~~~~~~~~~~~~~p~y~~~~~~~~~~~~t~~~~~~~~t~-~~~------------- 391 (943)
T KOG2042|consen 326 DPREVASDGFMLNLSAVLSRLSEPFLDPSIKKIDKIDPEYLINISKETRSKETELNADDKETC-FYD------------- 391 (943)
T ss_pred CHHHhhchHHHHHHHHHHHHhcccccccccccccccChHHhcCccHhhhhhhhhhccchhhhh-ccC-------------
Confidence 999999999999999999999999999999999999999999888888899999999888877 773
Q ss_pred CcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 002404 438 SDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLA 517 (927)
Q Consensus 438 ~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFiTecFFLT~~~lhlg~~~~~~~~~~l~~~i~~~~~~l~ 517 (927)
.++++||+|||||||+++||+|+.|++..|.++.+.|.+++..++
T Consensus 392 -----------------------------------~~~~~~F~t~cfFltl~~~~l~~~~~~~~~~~i~~~i~~l~~~i~ 436 (943)
T KOG2042|consen 392 -----------------------------------KPGEPNFPTECFFLTLAALHLGLLPTCSAFSEINRSLPELKPLIE 436 (943)
T ss_pred -----------------------------------CCCCCCcchHHHHHHHHHHHhchhHHHHHHHHHHHHhHHHHHHHH
Confidence 225789999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhc-C-CCC-CCCCCCC
Q 002404 518 TLKATQGQTP-SSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVG-G-FKM-PLPDTCP 593 (927)
Q Consensus 518 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~wL~rl~~-~-~~l-PLp~~~p 593 (927)
.++..+++.. .......+.++++.++.+.+.+.|+++ .+.+|.+..+++.|+.+++.|++++++ + ... ++|-.+|
T Consensus 437 ~lk~~~d~~~~a~~~~~~l~r~e~~lk~~~~~k~~~~~-~~~~p~l~~~~~~f~~~~s~~l~~~~~~~~~~~~~~p~~~p 515 (943)
T KOG2042|consen 437 TLKVIADGYSVANLESADLTRLEKGLKLLSSIKPCLEI-TLLFPSLLQRCLNFYDFMSEGLLRVVDLEMPDSSTLPLNAP 515 (943)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhh-hhcCcHHHHHhhccHHHHHHHHHHHhhccCCcccCCCCCCc
Confidence 8877665422 234557889999999999999999999 789999999999999999999999997 2 222 4556788
Q ss_pred ccccccchHHHHhHHHHHHHHhhc-CccccccchHHHHHHHHHHhCCCCCccChhhhhhHHHHHHhhcCCCCCCcchhHH
Q 002404 594 MEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATAT 672 (927)
Q Consensus 594 ~~f~~lPE~~iEdi~d~~~f~~r~-p~~l~~~~~~~li~f~i~~l~~~~~ikNPhLraklvevL~~~~p~~~~~~~~~~~ 672 (927)
..|+++|||++||+.+|+.|+.++ +..+.....+++++|++.+|++++|+||||||||+|||++ +|....+...+..
T Consensus 516 ~~f~~lPE~~vedi~efllf~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~ikNP~l~aKlvevl~--~~~~~~s~~~v~~ 593 (943)
T KOG2042|consen 516 CRFSALPEFFVEDIEEFLLFARKLGKMALDLQRLADIVTFLTVFMTSSMYIKNPYLRAKLVEVLS--MPKPSLSFNAVSR 593 (943)
T ss_pred cccccCchhhcCCHHHHHHHHHHhchhhhccccchhHHHHHHHhcccHhhhcChHHHHHHHHHHh--ccCcccCchHHHH
Confidence 999999999999999999999999 5677788899999999999999999999999999999999 3433344456888
Q ss_pred hhhhccchHHHHHHHHHHHhHhhhccCCCcccccccchhhhHHHHHHHHhCChhhHHHHHHHHHHhccchhHHHHHHHHH
Q 002404 673 LFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIN 752 (927)
Q Consensus 673 lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~~Il~~LW~~~~~r~~~~~~a~~~~~~~FvrFvnlLiN 752 (927)
+|+.|+.+. |+|+||+||||||.||+++|||||||+||+|+.|++++|++|.||.++.+.++++ ++.|+||+|+++|
T Consensus 594 v~~~~~~~~--L~~~llr~yv~ie~tg~s~qfydKfnvr~~i~~i~~~mw~~pa~~~~~~~~~~~~-~~~f~rfvn~l~N 670 (943)
T KOG2042|consen 594 VIEAHENGG--LVPCLLRFYVDIESTGQSSQFYDKFNVRRNISEILEYMWQDPAYRGEFMDEAKDA-PPVFVRFVNMLLN 670 (943)
T ss_pred HHHhccccc--cchhhhhheeeeecCCCchhHHHHhHHHhhHHHHHHHHhcCccccchhhhhcccc-chHHHHHHHHHhh
Confidence 999888775 9999999999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHH
Q 002404 753 DSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPE 832 (927)
Q Consensus 753 D~tfLLDEsL~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~pe 832 (927)
|+||||||++++|.+||++|..++|.++|+.++.++|+++++.+++++|+||+|+.+|++|++||+++|++||+||++||
T Consensus 671 d~t~lLDE~l~~L~~i~~iq~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~e 750 (943)
T KOG2042|consen 671 DATFLLDESLSELMEIHQIQPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPE 750 (943)
T ss_pred hHHHHHhHHHHHhhhhhhhhhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcCCccccCCccCCCChHHHHHHHHHHHHhcccccccchhhHhhhhcCCCChhhhHH--Hh
Q 002404 833 MIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSV--IS 910 (927)
Q Consensus 833 ivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~LL~~i~~IYlnL~~~d~~~~F~~AVa~DgRSy~~elf~--i~ 910 (927)
+|+|+|+||||||.+||||||.+||||||++|+|+||++|++|++||+||++ ++.|+.|||.|||||++++|. +.
T Consensus 751 lv~rla~MLN~nL~~lvGPK~~~Lkvkdp~~y~fePk~ll~~i~~iYlnl~~---~~~F~~avA~D~RSys~~lF~~a~~ 827 (943)
T KOG2042|consen 751 LVERLAAMLNYNLSQLVGPKCSDLKVKDPEKYGFEPKQLLSQLSDIYLNLSS---EPSFVEAVAKDGRSYSEELFNHAIS 827 (943)
T ss_pred HHHHHHHHHhhhHHHhhCCcccccccCCccccCCChHHHHHHHHHHHHhhcc---chhHHHHHhccccccCHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999995 358999999999999999964 44
Q ss_pred hh
Q 002404 911 YM 912 (927)
Q Consensus 911 ~~ 912 (927)
.+
T Consensus 828 ~~ 829 (943)
T KOG2042|consen 828 IL 829 (943)
T ss_pred HH
Confidence 44
No 4
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.47 Score=52.78 Aligned_cols=279 Identities=20% Similarity=0.236 Sum_probs=158.7
Q ss_pred HHHHHHhcCCCCCCCCCCCccccccchHHHHhHHHHHHHHhhc--C-cc-ccc----cchHHHHHHHHHHhCCCCCccCh
Q 002404 575 VWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--P-KA-LDG----VLLDDFMNFIIMFMASPKYIRNP 646 (927)
Q Consensus 575 ~wL~rl~~~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~--p-~~-l~~----~~~~~li~f~i~~l~~~~~ikNP 646 (927)
.||++.+-. ++.-.+..-..|+.+||+++......+.-++.| | +. .+. ..+....+|.-+--..| .|--.
T Consensus 2 ~wll~~~lr-tl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~-riv~a 79 (489)
T KOG4692|consen 2 IWLLERMLR-TLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADP-RIVLA 79 (489)
T ss_pred hHHHHHHHH-HhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCc-eeeec
Confidence 477766521 000112233569999999999999888888776 2 11 222 22344445554444445 34445
Q ss_pred hhhhhHHHHHHh--hcCCCCCCcchhHHhhhhccchHHHHHHHHHHHhHh---hhc--------cCCCcccccccchhhh
Q 002404 647 YLRSKMVEVLNC--WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVD---IEF--------TGSHTQFYDKFNIRHN 713 (927)
Q Consensus 647 hLraklvevL~~--~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm~fYvd---vE~--------TG~~sqFYdKFn~R~~ 713 (927)
-.|-.|.+.|.. +.|. | +..+=...+-.+-.++.+|+.-|-. +.. -|. .| .||++
T Consensus 80 ~~kdsllqal~t~~c~~~--~----vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~--Gf----~y~~~ 147 (489)
T KOG4692|consen 80 SCKDSLLQALGTLTCHKS--G----VRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGS--GF----SYLKN 147 (489)
T ss_pred hhHHHHHHHhhheeechh--h----hhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccC--Cc----ccccc
Confidence 567777777754 3332 1 1111112223334455555555522 011 121 12 22221
Q ss_pred H-HHHHHHHhCChh-----------hHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhh
Q 002404 714 I-AELLEYLWQVPS-----------HRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEW 781 (927)
Q Consensus 714 I-~~Il~~LW~~~~-----------~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~~~~d~~~w 781 (927)
= .++++.=-.+.. +-+++...+--+++++-..|.|.++|-.+|-+.|-.-.+.+|.+.-+.|+++-
T Consensus 148 r~phl~rsr~~n~~~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~-- 225 (489)
T KOG4692|consen 148 REPHLCRSRSRNETHTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTL-- 225 (489)
T ss_pred CCchhhhhhhcccccccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 1 123333222222 22233322211246788999999999999999999887777665544443211
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCc------HHHHHHHHHHHHHHHHhhcCCCc-C
Q 002404 782 ERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLL------PEMIERVASMLNYFLLQLVGPQR-K 854 (927)
Q Consensus 782 ~~l~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~------peivdRlA~MLNynL~~LvGPkc-~ 854 (927)
.-....+.|-.-+.|+-.-++.|...+...|+.|+. .-+.+||+..||..|.....|.. .
T Consensus 226 -------------~e~~Qlk~C~~cFeLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~~lf 292 (489)
T KOG4692|consen 226 -------------FEPFQLKKCCVCFELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEFFLF 292 (489)
T ss_pred -------------cCHHHHhHhhhhHHHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhccccchh
Confidence 111223467777889999999999999999999982 35689999999999988776553 2
Q ss_pred Cccc----cCCccCCCChHHHHHHHHHHHHhccc
Q 002404 855 SLTL----KDPEKYEFRPKQLLKQIVCIYVHLAR 884 (927)
Q Consensus 855 ~LKV----knpekY~F~Pk~LL~~i~~IYlnL~~ 884 (927)
...| .+-++..=-| +|..++-|.+||-.
T Consensus 293 ~rvv~~~~~~le~V~hyp--il~a~~GIll~Ll~ 324 (489)
T KOG4692|consen 293 VRVVRRQGQPLEKVSHYP--ILAALVGILLNLLE 324 (489)
T ss_pred HHHHHhhcCChhhhcccc--hHHHHHHHHHHHHH
Confidence 2222 1223333223 78889999999865
No 5
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.74 E-value=89 Score=29.66 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhc
Q 002404 313 VMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAH 354 (927)
Q Consensus 313 ~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~vi~~N~~R~k 354 (927)
+|...+...|..|+.|-+ +.-+|.+.-.|+|..+..+.....
T Consensus 58 ~lR~~R~~ah~~fd~lw~~~~~~R~~aY~wLA~~lgi~~~~cH 100 (102)
T PF11672_consen 58 ELRRARKAAHRAFDPLWQSGHMSRSDAYRWLAKKLGIPVEECH 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHcCCChHhcc
Confidence 566678889999999999 557899999999999888766543
No 6
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=23.37 E-value=3e+02 Score=28.12 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHHHHH
Q 002404 500 SDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVD 579 (927)
Q Consensus 500 ~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~wL~r 579 (927)
.++..+..++++++++++..+++.+-.--.+++..+.++.++++.-...+ ..++..+...-.++-|.+.
T Consensus 44 kk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs~n~-----------~~q~~~~K~vlSv~f~vl~ 112 (175)
T KOG4253|consen 44 KKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQSKNK-----------TAQAHLHKWVLSVAFYVLK 112 (175)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 56777888899999988876643211223445666667777765443332 2233333333333333333
Q ss_pred HhcCCCCCCCCCCCccccccchHHHHhHHHHHHHHh
Q 002404 580 LVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFAS 615 (927)
Q Consensus 580 l~~~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~ 615 (927)
..-+ ..|.-.....+-..+|-|.+.--.+.+.++-
T Consensus 113 ~~~~-~~~~~K~ss~pv~~~Ptf~~~~w~~~~l~~p 147 (175)
T KOG4253|consen 113 IMYG-KTPVYKLSSSPVTLFPTFVSGVWSQGWLYVP 147 (175)
T ss_pred HHHh-hceeeeecCCceeeecchhccchhHHHHHHH
Confidence 2211 1111122233355678887776666666553
No 7
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.28 E-value=3.2e+02 Score=30.41 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChH
Q 002404 495 LLKAFSDFKHLVQDISRAEDTLATLKATQGQT--PSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGD 561 (927)
Q Consensus 495 ~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~ 561 (927)
+.-...+......+|.+++.+|.+|+..+--- ..-.++.+||..+++++++++-.-.++. -|.|.+
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs-sL~ekD 144 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS-SLAEKD 144 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchhh
Confidence 44444445555556777777777766433110 1223566788899999888877777777 666653
No 8
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.15 E-value=1.2e+02 Score=30.98 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhh
Q 002404 496 LKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEA 554 (927)
Q Consensus 496 ~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 554 (927)
.+...++.++.+++.++++|+..++++..-.--..++.++.+++++++++.......++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777788888887777765542110000112466677777777777665554444
No 9
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.24 E-value=3.1e+02 Score=23.83 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHH
Q 002404 724 VPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNK 764 (927)
Q Consensus 724 ~~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~ 764 (927)
+|.+++-+.-.|++. -|.|++|.|+++|..
T Consensus 8 ~~l~~Ql~el~Aed~-----------AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 8 DPLSNQLYELVAEDH-----------AIEDTIYYLDRALQR 37 (65)
T ss_dssp SHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHc
Confidence 455555554455543 799999999999864
No 10
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=17.28 E-value=1.2e+02 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHhhhhccchHHHHHHHHHHHhHhhhccCCCcc
Q 002404 671 ATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQ 703 (927)
Q Consensus 671 ~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sq 703 (927)
..-+.+||+- |.|+.-|+|+.+.|+..+
T Consensus 4 KA~I~~HP~Y-----~~Ll~Ayi~C~KVGAP~e 31 (45)
T PF03790_consen 4 KAKIASHPLY-----PRLLAAYIDCQKVGAPPE 31 (45)
T ss_pred HHHHHcCCCc-----HHHHHHHHHHHhcCCCHH
Confidence 3445678876 688999999999998754
Done!