Query 002404
Match_columns 927
No_of_seqs 178 out of 296
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 01:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 100.0 2E-186 7E-191 1669.7 79.1 801 10-910 3-845 (968)
2 2f6m_A Suppressor protein STP2 32.3 99 0.0034 25.8 6.1 29 725-764 3-31 (65)
3 2ke4_A CDC42-interacting prote 16.2 3.4E+02 0.012 24.2 6.9 57 498-554 13-83 (98)
4 3qoq_A Alginate and motility r 11.6 2E+02 0.0069 24.1 3.8 29 699-738 13-41 (69)
5 4ati_A MITF, microphthalmia-as 11.4 1.3E+02 0.0043 27.9 2.7 53 754-806 65-117 (118)
6 1r8j_A KAIA; circadian clock p 10.8 2.1E+02 0.0072 30.3 4.4 76 782-903 185-261 (289)
7 3pe0_A Plectin; cytoskeleton, 9.9 1.2E+03 0.042 24.2 10.3 83 495-578 43-131 (283)
8 3pdy_A Plectin; cytoskeleton, 9.5 6.7E+02 0.023 24.6 7.7 62 497-559 142-209 (210)
9 2k9u_B Filamin-binding LIM pro 8.6 73 0.0025 21.5 -0.0 21 1-30 1-21 (26)
10 3f1i_H Hepatocyte growth facto 8.1 1.1E+03 0.037 21.0 7.6 41 480-520 35-75 (98)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=100.00 E-value=2e-186 Score=1669.72 Aligned_cols=801 Identities=25% Similarity=0.425 Sum_probs=724.7
Q ss_pred hHHHHHHHHHHhheeeccCCcCCCCCCeeehhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHHH
Q 002404 10 PEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRR 89 (927)
Q Consensus 10 ~~~~~~~~l~~if~vTl~~~~~~~~~~~~yL~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R 89 (927)
+|.-.-.+|++||+||+||++ .+| ..|+. +.|| ++|. .|+.|++|++|++||++.+ +.++||+||++||+|
T Consensus 3 ~~~~~~~~l~~if~vtl~~~~-~~~--~~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R 73 (968)
T 3m62_A 3 PEFRSMTAIEDILQITTDPSD-TRG--YSLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRR 73 (968)
T ss_dssp CHHHHHHHHHHHHTEESSCCS-SSS--CEECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHeeecCccc-cCC--ceEee--HHHh-ccCC--CCChhhHHHHHHHHHhcCC-CCCCcHHHHHHHHHH
Confidence 444446679999999999984 234 45555 5566 3444 5999999999999999876 447999999999999
Q ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCC
Q 002404 90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID 169 (927)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~ 169 (927)
|.+++|+++++ ...+++.++++++++||||||++++++||||++++ ..++++.++.+.+
T Consensus 74 ~~~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~---- 132 (968)
T 3m62_A 74 NQQQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN---- 132 (968)
T ss_dssp HHHHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG----
T ss_pred HHHHHHhcccC---CCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCc--------------hHHHHHHHHhccc----
Confidence 99999988542 23467789999999999999999999999998654 2357788877532
Q ss_pred CCCCCCCCCCCCChHHHHHHHHhh-ccCChHHHHHHHHHHHH----HHhhhcCcccc--chhHHHHHHHhhCChhHHHHh
Q 002404 170 GFGNSTSSGSQCPPGFLKEFFEEA-DFDTLDPILKGLYENLR----GSVLNVSALGN--FQQPLRALLYLVSFPVGVKSL 242 (927)
Q Consensus 170 ~~~~~~~~~~~~~~~Fl~~li~~~-~~d~l~~if~~i~~~l~----~~~~~~~~~~~--~~~~l~~l~~L~~~k~ia~~l 242 (927)
...+||.++++|+ ++|++.++|+|+|..+. ..+.++++.++ |++++++|..|+++||||++|
T Consensus 133 -----------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l 201 (968)
T 3m62_A 133 -----------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIF 201 (968)
T ss_dssp -----------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHG
T ss_pred -----------chHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCccHHHHHH
Confidence 2359999999999 45559999888888884 45566777665 999999999999999999999
Q ss_pred hcCCCCCCCccCCCchhhhhhcccccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002404 243 VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG 322 (927)
Q Consensus 243 ~~~~~f~p~~~~~~G~~~E~~SlLGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~ 322 (927)
+++|+|+|+. ..+|+++|+.|+|||||++||++ |+|+.+||+++.+++++++.++++++|.+++.++++||
T Consensus 202 ~~~~~f~P~~-~~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~ 272 (968)
T 3m62_A 202 TKIDGFFADY-SCKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLF 272 (968)
T ss_dssp GGSTTSSCCT-TCCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCcccCCCC-CccHHHHHHHHhHHhhhhcccCC--------cchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 36899999999999999999994 78899999999999999999999999999999999999
Q ss_pred HHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhccccCCCCcCChhhHHHHHHHHHHhhhhhcCCCccccCccCccCcccC
Q 002404 323 DVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS 401 (927)
Q Consensus 323 ~I~~~Llr-~~~sRe~vL~w~a~vi~~N~~R~k~~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~ 401 (927)
+|+++||| |+++|++||+|||.|++.||+|++||+||.++||||||+|+++||+|||+||||++++|+||||++||+++
T Consensus 273 ~I~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~ 352 (968)
T 3m62_A 273 FIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNP 352 (968)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSC
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHhCcHHHhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCC
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-CcCCCCcccccCChHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 002404 402 S-RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFI 480 (927)
Q Consensus 402 ~-~id~~~eTri~a~~ee~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFi 480 (927)
+ |+|+++|||||+|++|+++||++..+ ...+++|||
T Consensus 353 ~~ridi~~ETrlna~~~e~~~~~~~~~~-------------------------------------------~~~~~~nFI 389 (968)
T 3m62_A 353 SLFIDLSGETRLNSDFKEADAFYDKNRK-------------------------------------------TADSKPNFI 389 (968)
T ss_dssp CSSSCCTTCCBSSCCHHHHHHHHHHHCC-------------------------------------------CSSCCCCHH
T ss_pred CCCCCCChhhhhcCCHHHHHHHHhhccc-------------------------------------------CCCCCCCch
Confidence 5 59999999999999999999975320 134588999
Q ss_pred hhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCch----HHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002404 481 CECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQI 556 (927)
Q Consensus 481 TecFFLT~~~lhlg~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~ 556 (927)
|||||||++|||||+++++.+|+++.++|++++++++++++.++ .+| ..++++++++++++++.+.++|+++ +
T Consensus 390 tecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~--~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~-~ 466 (968)
T 3m62_A 390 SDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAA--NHDVFARFITAQLSKMEKALKTTESLRFALQG-F 466 (968)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 99999999999999999999999999999999999999987632 223 2467899999999999999999999 8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCC----------------CCCCccccccchHHHHhHHHHHH
Q 002404 557 LRDGDLIQHALSFYRLMIVWLVDLVGG--------FKMPLP----------------DTCPMEFACMPEHFVEDAMELLI 612 (927)
Q Consensus 557 L~dp~l~~~~~~F~~~~~~wL~rl~~~--------~~lPLp----------------~~~p~~f~~lPE~~iEdi~d~~~ 612 (927)
|+||.++.++++|++++++||+|+++| +++||| +++|.+|+|+|||+||||+||+.
T Consensus 467 l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~ 546 (968)
T 3m62_A 467 FAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSL 546 (968)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHHHhHHHHHH
Confidence 999999999999999999999999964 678887 36899999999999999999999
Q ss_pred HHhhc-Cccc-cccchHHHHHHHHHHhCCCCCccChhhhhhHHHHHHh-hcCCCCCCcchhHHhhhhccchHHHHHHHHH
Q 002404 613 FASRI-PKAL-DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLL 689 (927)
Q Consensus 613 f~~r~-p~~l-~~~~~~~li~f~i~~l~~~~~ikNPhLraklvevL~~-~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm 689 (927)
|+.|+ |+.+ .+..++++++|||+||+||+|||||||||||||+|+. ++|..++++|.+.++|++|+++++||++|||
T Consensus 547 F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm 626 (968)
T 3m62_A 547 YISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALL 626 (968)
T ss_dssp HHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHHHHHHHHHH
Confidence 99999 8655 5678999999999999999999999999999999985 7898777778899999999999999999999
Q ss_pred HHhHhhhccCCCcccccccchhhhHHHHHHHHh-CChhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002404 690 KLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEL 768 (927)
Q Consensus 690 ~fYvdvE~TG~~sqFYdKFn~R~~I~~Il~~LW-~~~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I 768 (927)
+||||||+||+|+|||||||+||+|+.||++|| ++|.||++|+++++++ +++|+|||||||||+||||||||++|++|
T Consensus 627 ~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I 705 (968)
T 3m62_A 627 DFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEV 705 (968)
T ss_dssp HHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999875 78999999999999999999999999999
Q ss_pred HHHHHHhccchhhcCC-CHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHh
Q 002404 769 KVIEAEMSNTAEWERR-PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQ 847 (927)
Q Consensus 769 ~~~q~~~~d~~~w~~l-~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~ 847 (927)
|++|.+++|.+.|... .+|+|+++++.++++||+|||||+||++|++||++||+++|+||++||||+|||+||||||++
T Consensus 706 ~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~ 785 (968)
T 3m62_A 706 HNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLES 785 (968)
T ss_dssp HHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHH
Confidence 9999999988777653 356789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCCccccCCccCCCChHHHHHHHHHHHHhcccccccchhhHhhhhcCCCChhhhHHHh
Q 002404 848 LVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVIS 910 (927)
Q Consensus 848 LvGPkc~~LKVknpekY~F~Pk~LL~~i~~IYlnL~~~d~~~~F~~AVa~DgRSy~~elf~i~ 910 (927)
||||||++||||||+||||+||+||.+||+||+||++. ++|++|||+|||||++++|...
T Consensus 786 LvGPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~---~~F~~aVa~DgRSy~~elF~~a 845 (968)
T 3m62_A 786 LVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQ---SEFISAVAKDERSFNRNLFVRA 845 (968)
T ss_dssp HHSHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTTC---HHHHHHHHHCTTTCCHHHHHHH
T ss_pred hcCccccccccCCHhhcCCCHHHHHHHHHHHHhhccCC---hHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999963 4799999999999999998765
No 2
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.27 E-value=99 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHH
Q 002404 725 PSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNK 764 (927)
Q Consensus 725 ~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~ 764 (927)
|.|++-+.-.|++. -|.|++|.||++|..
T Consensus 3 pl~~Qll~l~Aed~-----------AieDaiy~L~~aL~~ 31 (65)
T 2f6m_A 3 DGLNQLYNLVAQDY-----------ALTDTIEALSRMLHR 31 (65)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHc
Confidence 44555555555554 799999999999863
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=16.22 E-value=3.4e+02 Score=24.21 Aligned_cols=57 Identities=23% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------------CC-CCchHHHHHHHHHHHHHHHHHHhHHHHhh
Q 002404 498 AFSDFKHLVQDISRAEDTLATLKATQ-------------GQ-TPSSQLNLEITRIEKEIELSSQEKLCYEA 554 (927)
Q Consensus 498 ~~~~~~~l~~~i~~~~~~l~~~~~~~-------------~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 554 (927)
--++-++|.+.|.+++++++.....+ ++ |++..++..|.....+++++....+-+++
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777765543322 11 23333466677777777777776666666
No 4
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=11.59 E-value=2e+02 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCCcccccccchhhhHHHHHHHHhCChhhHHHHHHHHHHh
Q 002404 699 GSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEE 738 (927)
Q Consensus 699 G~~sqFYdKFn~R~~I~~Il~~LW~~~~~r~~~~~~a~~~ 738 (927)
..++.+++||++|.+ +..++++...|+++
T Consensus 13 ~~~sr~~~kf~LRlP-----------~eL~~~L~~~A~~~ 41 (69)
T 3qoq_A 13 TYSSRTADKFVVRLP-----------EGMREQIAEVARSH 41 (69)
T ss_dssp CCCTTTSEEEEEECC-----------TTHHHHHHHHHHHT
T ss_pred CcccccCCceEEECC-----------HHHHHHHHHHHHHh
Confidence 456788999999987 45688899999876
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=11.35 E-value=1.3e+02 Score=27.89 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHhhhhhhhh
Q 002404 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRID 806 (927)
Q Consensus 754 ~tfLLDEsL~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~~~er~~rs~ 806 (927)
-.-.|+.+++++..++.-...+.+...-...-+...+.....++++|.+|+.+
T Consensus 65 Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE~~a~~~ 117 (118)
T 4ati_A 65 KGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAH 117 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34568888999888877666664322101111223344556678888888754
No 6
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=10.79 E-value=2.1e+02 Score=30.32 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCCC-cCCccccC
Q 002404 782 ERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQ-RKSLTLKD 860 (927)
Q Consensus 782 ~~l~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPk-c~~LKVkn 860 (927)
..+|++||++..++|...=|.. +|.||+.+. -+|--+++.|.-- +.++-|
T Consensus 185 rnl~~~ErqeLl~~Lk~~YR~I------------lL~YF~~d~---------------~~Nq~ID~FVN~aFFaDipV-- 235 (289)
T 1r8j_A 185 RNLPAYESQKLHQAMQTSYREI------------VLSYFSPNS---------------NLNQSIDNFVNMAFFADVPV-- 235 (289)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH------------HHHHTSTTC---------------CHHHHHHHHHHHHHHTTCCH--
T ss_pred HhCCHHHHHHHHHHHHHHHHHH------------HHHHhCCch---------------HHHHHHHHHHHHHHhcCCch--
Confidence 5689999999988887766654 577777654 2333444444222 456666
Q ss_pred CccCCCChHHHHHHHHHHHHhcccccccchhhHhhhhcCCCCh
Q 002404 861 PEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYN 903 (927)
Q Consensus 861 pekY~F~Pk~LL~~i~~IYlnL~~~d~~~~F~~AVa~DgRSy~ 903 (927)
.+|++|-.+|-+ +|.+-+-=+|||=.
T Consensus 236 ------------tqivEIHMeLmD-----eFskQLkLEGrsee 261 (289)
T 1r8j_A 236 ------------TKVVEIHMELMD-----EFAKKLRVEGRSED 261 (289)
T ss_dssp ------------HHHHHHHHHHHH-----HHHHHHHTTTCCTT
T ss_pred ------------HHHHHHHHHHHH-----HHHHHhhhcccchH
Confidence 899999999984 59999999999843
No 7
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=9.89 E-value=1.2e+03 Score=24.15 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHH
Q 002404 495 LLKAFSDFKHLVQDISRAEDTLATLKATQ------GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALS 568 (927)
Q Consensus 495 ~~~~~~~~~~l~~~i~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~ 568 (927)
+.....+|+.+..+|..-+..++.+.+.. +.+.++.++..+..++.+++.+...-.|.+. .|.+-.-....+.
T Consensus 43 l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~-~L~~a~~~~qF~~ 121 (283)
T 3pe0_A 43 MTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEA-HLKENAAYFQFFS 121 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44455667777777766565555543321 1134566778888888899888877777666 4543322222222
Q ss_pred HHHHHHHHHH
Q 002404 569 FYRLMIVWLV 578 (927)
Q Consensus 569 F~~~~~~wL~ 578 (927)
-..=+-.||.
T Consensus 122 da~e~e~Wl~ 131 (283)
T 3pe0_A 122 DVREAEGQLQ 131 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 2234567765
No 8
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=9.47 E-value=6.7e+02 Score=24.60 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccC
Q 002404 497 KAFSDFKHLVQDISRAEDTLATLKATQ------GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRD 559 (927)
Q Consensus 497 ~~~~~~~~l~~~i~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~d 559 (927)
....+|..+.++|...+..+..+.... +.++++.++.....+..+++.+.....|.+. .|.|
T Consensus 142 ~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~-hLk~ 209 (210)
T 3pdy_A 142 AKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEA-HLKE 209 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 344566666666655555554443321 2234667888888899999999999999888 5643
No 9
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=8.62 E-value=73 Score=21.50 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=13.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhheeeccCCc
Q 002404 1 MATTKPQRSPEEIEDIILRKIFLVTLNEAT 30 (927)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~if~vTl~~~~ 30 (927)
||+ |||.- +.+.|| |||.|+.
T Consensus 1 ma~-kpeKR-------~aSSvF-ITLapp~ 21 (26)
T 2k9u_B 1 MAS-KPEKR-------VASSVF-ITLAPPR 21 (26)
T ss_dssp CCC-CSSSS-------CEEEEE-EEECCSS
T ss_pred CCC-cchhh-------eeeeEE-EEecCcc
Confidence 555 66543 446777 8888763
No 10
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=8.09 E-value=1.1e+03 Score=21.05 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002404 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLK 520 (927)
Q Consensus 480 iTecFFLT~~~lhlg~~~~~~~~~~l~~~i~~~~~~l~~~~ 520 (927)
.-+--|+|+..+|=-+..-+.+.+........+|+.|..+.
T Consensus 35 sVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~ 75 (98)
T 3f1i_H 35 AVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIR 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668999999998888777666555555555555555443
Done!