Query 002404
Match_columns 927
No_of_seqs 178 out of 296
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 01:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ja1 a.186.1.1 (A:177-282) 31.0 23 0.0017 29.8 4.4 76 782-903 4-80 (106)
2 d2f6ma1 a.2.17.1 (A:322-385) V 17.8 59 0.0043 25.1 4.0 15 750-764 16-30 (64)
3 d1st6a3 a.24.9.1 (A:253-371) V 16.6 1.7E+02 0.012 25.0 7.3 43 504-547 71-113 (119)
4 d1st6a4 a.24.9.1 (A:372-488) V 15.6 2E+02 0.015 24.5 7.5 42 505-547 63-104 (117)
5 d1jl7a_ a.1.1.2 (A:) Glycera g 6.2 3.6E+02 0.026 22.4 6.0 47 314-360 55-101 (147)
6 d2j9ua1 a.24.28.1 (A:148-241) 5.8 3.1E+02 0.022 22.3 4.6 31 315-345 28-62 (94)
7 d1i17a_ d.6.1.1 (A:) Prion-lik 5.4 1.4E+02 0.01 24.9 2.2 20 476-495 52-71 (107)
8 d1pzqa_ a.34.3.1 (A:) Erythron 5.1 2.2E+02 0.016 20.7 2.8 35 507-541 12-47 (60)
9 d1z8ua1 a.7.11.1 (A:2-91) Alph 4.8 3.4E+02 0.025 21.4 4.1 46 285-330 44-89 (90)
10 d1h2vc2 a.118.1.14 (C:291-480) 4.7 9.3E+02 0.068 21.6 8.0 48 331-379 116-170 (190)
No 1
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=31.00 E-value=23 Score=29.76 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=51.6
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCCC-cCCccccC
Q 002404 782 ERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQ-RKSLTLKD 860 (927)
Q Consensus 782 ~~l~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPk-c~~LKVkn 860 (927)
..+|++||++..++|...=|.. ++.||+.+.+ +|--+++.|.-- +.++-|
T Consensus 4 r~L~p~ErqeLL~~Lk~~YR~I------------lLsYF~~d~~---------------~nq~id~fVn~aFfadi~v-- 54 (106)
T d1r8ja1 4 RNLPAYESQKLHQAMQTSYREI------------VLSYFSPNSN---------------LNQSIDNFVNMAFFADVPV-- 54 (106)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH------------HHHHTSTTCC---------------HHHHHHHHHHHHHHTTCCH--
T ss_pred ccCCHHHHHHHHHHHHHHHHHH------------HHHHcCCcHH---------------HHHHHHHHHHHHHHcCCcH--
Confidence 4689999999888887765553 5667766542 233333333221 446665
Q ss_pred CccCCCChHHHHHHHHHHHHhcccccccchhhHhhhhcCCCCh
Q 002404 861 PEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYN 903 (927)
Q Consensus 861 pekY~F~Pk~LL~~i~~IYlnL~~~d~~~~F~~AVa~DgRSy~ 903 (927)
.++++|-.+|-+ +|.+-+--.|||=.
T Consensus 55 ------------~~ivEiHmel~d-----eFskqLkLEGrs~e 80 (106)
T d1r8ja1 55 ------------TKVVEIHMELMD-----EFAKKLRVEGRSED 80 (106)
T ss_dssp ------------HHHHHHHHHHHH-----HHHHHHHTTTCCTT
T ss_pred ------------HHHHHHHHHHHH-----HHHHHHhhccccHH
Confidence 889999999983 59999999999843
No 2
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.80 E-value=59 Score=25.10 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHHH
Q 002404 750 LINDSIYLLDESLNK 764 (927)
Q Consensus 750 LiND~tfLLDEsL~~ 764 (927)
-|.|++|.|+++|..
T Consensus 16 AieDaiy~L~~aL~~ 30 (64)
T d2f6ma1 16 ALTDTIEALSRMLHR 30 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 699999999999863
No 3
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.60 E-value=1.7e+02 Score=25.02 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHH
Q 002404 504 HLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQ 547 (927)
Q Consensus 504 ~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 547 (927)
++-.+|..+-.+|..+.+ +++|++|++++.-+++.+.+..|..
T Consensus 71 ~~c~ei~~lt~qLadLr~-~G~G~sPeA~~lA~qi~~kL~~L~~ 113 (119)
T d1st6a3 71 GTCKTLGQMTDQLADLRA-RGQGATPMAMQKAQQVSQGLDLLTA 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555543 4568899987766677777766654
No 4
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.56 E-value=2e+02 Score=24.45 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHH
Q 002404 505 LVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQ 547 (927)
Q Consensus 505 l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 547 (927)
+-.+|..+-.+|..+.+ +++|++|++++.-+++.+.+..+..
T Consensus 63 lc~ei~~lt~qLadLr~-~GkG~sPeA~~lA~qi~~kL~~L~~ 104 (117)
T d1st6a4 63 SLGEISALTAKLSDLRR-HGKGDSPEARALAKQIATSLQNLQS 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-HSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443 4668899887666666666666544
No 5
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}
Probab=6.24 E-value=3.6e+02 Score=22.36 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHhchhhhccccCCC
Q 002404 314 MRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPL 360 (927)
Q Consensus 314 l~~~~~~L~~I~~~Llr~~~sRe~vL~w~a~vi~~N~~R~k~~~d~~ 360 (927)
++.+...+...+..++.+-+..+.+..++.++-....+|+...++|.
T Consensus 55 ~~~h~~~v~~~l~~~i~~l~d~~~l~~~l~~lg~~H~~~g~~~V~~~ 101 (147)
T d1jl7a_ 55 VAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGYGNKHIKAE 101 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHGGGSTTSCCCGG
T ss_pred HHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHhhhhccccCHH
Confidence 55566777778888888766777788888888777777765555443
No 6
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.75 E-value=3.1e+02 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.434 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhc-C---hhhHHHHHHHHHHH
Q 002404 315 RGLYKDLGDVLLALLK-N---TDTRENVLEYLAEV 345 (927)
Q Consensus 315 ~~~~~~L~~I~~~Llr-~---~~sRe~vL~w~a~v 345 (927)
..++-.|.+++.+|-| + -+.|.+|.+|+.+.
T Consensus 28 DqLhPlL~dL~~slnrl~~~dfegk~kv~~Wl~~L 62 (94)
T d2j9ua1 28 DQLHPLLAELLISINRVTRDDFENRSKLIDWIVRI 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 3455555555555555 3 37999999999765
No 7
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.37 E-value=1.4e+02 Score=24.92 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.7
Q ss_pred CCCChhhHHHHHHHHHHhch
Q 002404 476 KYPFICECFFMTARVLNLGL 495 (927)
Q Consensus 476 ~~nFiTecFFLT~~~lhlg~ 495 (927)
+-+|++.|+-.|++.+...+
T Consensus 52 q~~FV~dCvNiTv~~~~~~~ 71 (107)
T d1i17a_ 52 KEMLVTSCVNATQAANQAEF 71 (107)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHHhhHHHHHHhhccc
Confidence 44799999999999987754
No 8
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=5.09 E-value=2.2e+02 Score=20.73 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHH
Q 002404 507 QDISRAEDTLATLKATQGQT-PSSQLNLEITRIEKE 541 (927)
Q Consensus 507 ~~i~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~ 541 (927)
-.+.++++.|+.+.+.++.. -..+++..|.||+.+
T Consensus 12 ~rld~le~al~al~~~~gh~dvg~rle~llrrw~sr 47 (60)
T d1pzqa_ 12 DRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSR 47 (60)
T ss_dssp HHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcchhhcccHHHHHHHHHHHHHhcc
Confidence 45667777787776544321 133456666666654
No 9
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.82 E-value=3.4e+02 Score=21.44 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=33.0
Q ss_pred chhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002404 285 PDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK 330 (927)
Q Consensus 285 p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~Llr 330 (927)
-+..-.||...-.-.+++-+.+.+.+|++++.+-.....=...+|+
T Consensus 44 vn~Yinyy~~~~~GeqqEqdrA~~el~qeL~tla~~FL~KYR~fLk 89 (90)
T d1z8ua1 44 MNFYINYYRQQVTGEPQERDKALQELRQELNTLANPFLAKYRDFLK 89 (90)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445578876666677777889999999999888776665554444
No 10
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.70 E-value=9.3e+02 Score=21.59 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=30.6
Q ss_pred ChhhHHHHHHHHHHHHHhchhhhccccCC-------CCcCChhhHHHHHHHHHHhh
Q 002404 331 NTDTRENVLEYLAEVINRNSSRAHIQVEP-------LSCASSGMFVNLSAVMLRLC 379 (927)
Q Consensus 331 ~~~sRe~vL~w~a~vi~~N~~R~k~~~d~-------~~~aSDGFmlNl~~VLlrL~ 379 (927)
+.+++.++++||+.=++-=.-+ =-|.+. .....--|+-++..=.+||+
T Consensus 116 d~e~~~Rf~dWfShHLSNF~f~-W~W~eW~~~l~~~~~~Pk~~Fir~~l~k~~RLS 170 (190)
T d1h2vc2 116 NTTCVDRFINWFSHHLSNFQFR-WSWEDWSDCLSQDPESPKPKFVREVLEKCMRLS 170 (190)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTC-CCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhhccccc-cchHHHHHHHhCCccCchHHHHHHHHHHHHHhh
Confidence 6899999999999877522222 223221 11223468888888888886
Done!