BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002405
(927 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 78/387 (20%), Positives = 146/387 (37%), Gaps = 112/387 (28%)
Query: 52 VRLGKYKRDS-ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI--TEKSIQIGGK 108
+ G ++ DS ++V G WSPD IA ++ + I+ V EK+I +G +
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282
Query: 109 ---QPSGLFFIK---ISLVLNEQLPFAEKGL-SVSNIVSDNKHMLLGLS---DG-SLYSI 157
Q G+ + K +S+ N + F L S+ + + + LS DG +L+S
Sbjct: 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342
Query: 158 SWKGEFYG----------AFELVHSSNDSSVAALSHH-------------FPSNGLASVD 194
+G F VH++ + + S P+ G + VD
Sbjct: 343 DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG-SGVD 401
Query: 195 TSGAFVSD-HKFPISSAI-----IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248
+S A + P+ A+ I + C +YS+G+L +S
Sbjct: 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKH---IAIYSHGKLTEVPISY--------- 449
Query: 249 KIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA----------SLIRTVSLY 298
++ C +++ ++Q +AVG + V +Y L+ ++ + I +V+
Sbjct: 450 ---------NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 500
Query: 299 DWG--------------YSMDD-------------TGPVSCIAWTPDNSAFAVGWKSRGL 331
+ G YS+ + T V+C++W+PDN A G +
Sbjct: 501 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560
Query: 332 TVWS----------VSGCRLMSTIRQI 348
VW+ + G MS++ +
Sbjct: 561 IVWNMNKPSDHPIIIKGAHAMSSVNSV 587
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 288 SASLIRTVSLYDW----GYSMDDTGP-----VSCIAWTPDN---SAFAVGWKSRGLTVWS 335
SAS RT+ L++ Y++ + G VSC+ ++P+ + + W + + VW+
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-DKTVKVWN 547
Query: 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD-EYGYRLYAIEEGSSE 394
+S C+L ST+ + +S+ V P+ G ++ WD G +LY++E S
Sbjct: 548 LSNCKLRSTLAGHT-GYVSTVAVSPDGSLCASGGKDGVVLL-WDLAEGKKLYSLEANSVI 605
Query: 395 RVLIFS 400
L FS
Sbjct: 606 HALCFS 611
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315
+G +++P+ + A G + GVV L+DLAE L YS++ + + +
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL----------YSLEANSVIHALCF 610
Query: 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346
+P N + G+ +W + ++ ++
Sbjct: 611 SP-NRYWLCAATEHGIKIWDLESKSIVEDLK 640
>pdb|2SFP|A Chain A, Alanine Racemase With Bound Propionate Inhibitor
pdb|2SFP|B Chain B, Alanine Racemase With Bound Propionate Inhibitor
pdb|1L6F|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
Alanine
pdb|1L6F|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-L-
Alanine
pdb|1L6G|A Chain A, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
Alanine
pdb|1L6G|B Chain B, Alanine Racemase Bound With N-(5'-Phosphopyridoxyl)-D-
Alanine
pdb|1NIU|A Chain A, Alanine Racemase With Bound Inhibitor Derived From L-
Cycloserine
pdb|1NIU|B Chain B, Alanine Racemase With Bound Inhibitor Derived From L-
Cycloserine
Length = 388
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 13 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 66
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 67 --LDEALALREKGIEAPILV 84
>pdb|1XQK|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
pdb|1XQK|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
pdb|1XQL|A Chain A, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
pdb|1XQL|B Chain B, Effect Of A Y265f Mutant On The Transamination Based
Cycloserine Inactivation Of Alanine Racemase
Length = 388
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 13 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 66
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 67 --LDEALALREKGIEAPILV 84
>pdb|1SFT|A Chain A, Alanine Racemase
pdb|1SFT|B Chain B, Alanine Racemase
pdb|1BD0|A Chain A, Alanine Racemase Complexed With Alanine Phosphonate
pdb|1BD0|B Chain B, Alanine Racemase Complexed With Alanine Phosphonate
Length = 388
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 13 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 66
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 67 --LDEALALREKGIEAPILV 84
>pdb|1EPV|A Chain A, Alanine Racemase With Bound Inhibitor Derived From D-
Cycloserine
pdb|1EPV|B Chain B, Alanine Racemase With Bound Inhibitor Derived From D-
Cycloserine
pdb|1FTX|A Chain A, Crystal Stucture Of Alanine Racemase In Complex With D-
Alanine Phosphonate
pdb|1FTX|B Chain B, Crystal Stucture Of Alanine Racemase In Complex With D-
Alanine Phosphonate
Length = 387
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119
D +++ ENL+ + DT ++AVV ++ Y H VQ+ +++ G + + F
Sbjct: 12 DLDAIYDNVENLRRLLPDDTHIMAVVKANAYGH-GDVQVARTALEAGASRLAVAF----- 65
Query: 120 LVLNEQLPFAEKGLSVSNIV 139
L+E L EKG+ +V
Sbjct: 66 --LDEALALREKGIEAPILV 83
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 244 LAEFIKIDKELGSGDAVCASI-AP-EQQILAVGTRRGVVELYDLAES------------- 288
L F+KI KE+ D + +S P ++ ILA G + V L + E+
Sbjct: 32 LDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII 91
Query: 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341
A L +L S T V+C+AW+ D ++ G ++ L +W+ +G L
Sbjct: 92 AELRHPFALS--ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 52 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 100
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 101 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 138
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 53 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 101
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 102 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 139
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 52 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 100
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 101 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 138
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 767 HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFS 826
H Q E ALR+ Q H W+ F +IS N+ N + IP +F
Sbjct: 47 HWTQTLGKEAALRILQ--------KHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQ 95
Query: 827 LLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
LL+ +++ +YL + ARK + R W DL A G
Sbjct: 96 LLDNDP-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 133
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 240 KGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299
+ L+ + I+ G+ ++C I E +L +GT RG+++++D+ + LIR+
Sbjct: 200 RTLERLQIIENSPRHGAVSSIC--IDEECCVLILGTTRGIIDIWDIRFNV-LIRS----- 251
Query: 300 WGYSMDDTGPVSCIA---WTPDNSAFAVGWKSRG-LTVWS 335
+S D P++ + + NS VG S+ LT+W+
Sbjct: 252 --WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 251 DKELGSGDAVCASIAPEQQILAVGTRRGVVEL-----YDLAESASLIRTVSLYDWGYSMD 305
D +LG+G +V S P A+ + RG+V + Y++ ++ L TV+ D D
Sbjct: 135 DPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL--TVNATD----QD 188
Query: 306 DTGPVSCIA 314
T P+S +A
Sbjct: 189 KTRPLSTLA 197
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 251 DKELGSGDAVCASIAPEQQILAVGTRRGVVEL-----YDLAESASLIRTVSLYDWGYSMD 305
D +LG+G +V S P A+ + RG+V + Y++ ++ L TV+ D D
Sbjct: 136 DPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL--TVNATD----QD 189
Query: 306 DTGPVSCIA 314
T P+S +A
Sbjct: 190 KTRPLSTLA 198
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 251 DKELGSGDAVCASIAPEQQILAVGTRRGVVEL-----YDLAESASLIRTVSLYDWGYSMD 305
D +LG+G +V S P A+ + RG+V + Y++ ++ L TV+ D D
Sbjct: 136 DPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL--TVNATD----QD 189
Query: 306 DTGPVSCIA 314
T P+S +A
Sbjct: 190 KTRPLSTLA 198
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 251 DKELGSGDAVCASIAPEQQILAVGTRRGVVEL-----YDLAESASLIRTVSLYDWGYSMD 305
D +LG+G +V S P A+ + RG+V + Y++ ++ L TV+ D D
Sbjct: 136 DPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQL--TVNATD----QD 189
Query: 306 DTGPVSCIA 314
T P+S +A
Sbjct: 190 KTRPLSTLA 198
>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 354 SSPIVKPNQDCK-YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG 412
SSP P + + +E L+ G ++W + Y L + G FG CC +
Sbjct: 281 SSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGI--------FGMCCDHAPYDA 332
Query: 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445
M Y ++R+L + K+ + LP
Sbjct: 333 MVMVNIAHYVDERVLETEGRWKGSEKVRDIPLP 365
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 772 DKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKT 831
D+ L + +A + H W+ F +IS N+ N + IP +F LL+
Sbjct: 44 DEYHWTQTLGKEAASRILQKHWSTWITEQDF-KQIS--NLGLNFVRIPIGYWAFQLLDND 100
Query: 832 CNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAG 865
+++ +YL + ARK + R W DL A G
Sbjct: 101 P-YVQGQVQYLEKALGWARKNNIRVWIDLHGAPG 133
>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 354 SSPIVKPNQDCK-YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG 412
SSP P + + +E L+ G ++W + Y L + G FG CC +
Sbjct: 281 SSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANG--------IFGCCCDHAPYDA 332
Query: 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445
M Y ++R+L + K+ + LP
Sbjct: 333 MVVVNIAHYVDERVLETEGRWKGSEKVRDIPLP 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,519,085
Number of Sequences: 62578
Number of extensions: 1061977
Number of successful extensions: 2171
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2157
Number of HSP's gapped (non-prelim): 43
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)