Query 002405
Match_columns 927
No_of_seqs 551 out of 3687
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 23:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 4E-83 8.6E-88 722.1 31.0 663 228-927 121-821 (1023)
2 PF07064 RIC1: RIC1; InterPro 100.0 5.6E-65 1.2E-69 522.2 20.9 236 681-927 4-247 (258)
3 KOG0276 Vesicle coat complex C 100.0 7.2E-41 1.6E-45 357.2 37.3 631 66-924 12-690 (794)
4 KOG0271 Notchless-like WD40 re 100.0 8.5E-38 1.8E-42 316.4 24.3 344 38-479 85-479 (480)
5 KOG0291 WD40-repeat-containing 100.0 1.6E-35 3.4E-40 323.1 41.4 408 20-483 97-552 (893)
6 KOG0271 Notchless-like WD40 re 100.0 3.3E-35 7.2E-40 297.7 24.1 331 204-569 111-479 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 8E-34 1.7E-38 291.9 22.5 278 66-479 174-458 (459)
8 KOG0272 U4/U6 small nuclear ri 100.0 7E-32 1.5E-36 277.6 19.6 265 222-527 179-458 (459)
9 KOG0318 WD40 repeat stress pro 100.0 1.6E-28 3.4E-33 259.0 44.9 480 20-611 60-583 (603)
10 KOG0319 WD40-repeat-containing 100.0 2.9E-30 6.2E-35 282.4 32.5 422 21-482 107-620 (775)
11 KOG0291 WD40-repeat-containing 100.0 4.3E-28 9.4E-33 265.2 47.5 453 20-571 56-550 (893)
12 KOG0318 WD40 repeat stress pro 100.0 7.8E-29 1.7E-33 261.3 35.5 376 22-419 193-601 (603)
13 KOG0286 G-protein beta subunit 100.0 2E-28 4.4E-33 241.0 26.6 282 66-479 54-343 (343)
14 KOG0319 WD40-repeat-containing 100.0 1.6E-27 3.4E-32 261.1 34.5 425 21-486 64-582 (775)
15 KOG0292 Vesicle coat complex C 100.0 2.6E-25 5.6E-30 246.7 44.3 266 136-481 15-321 (1202)
16 KOG0263 Transcription initiati 100.0 4.2E-28 9E-33 268.9 21.2 228 221-482 381-650 (707)
17 KOG0279 G protein beta subunit 100.0 1.5E-26 3.2E-31 226.9 27.2 279 203-527 10-311 (315)
18 KOG0263 Transcription initiati 100.0 7.4E-28 1.6E-32 266.9 19.7 242 204-470 447-703 (707)
19 KOG0306 WD40-repeat-containing 100.0 7.4E-26 1.6E-30 247.7 34.0 426 23-482 69-665 (888)
20 KOG0645 WD40 repeat protein [G 100.0 9.4E-26 2E-30 220.2 29.0 278 253-571 10-311 (312)
21 KOG0279 G protein beta subunit 99.9 1.4E-25 3E-30 220.0 28.4 277 253-571 11-313 (315)
22 KOG0284 Polyadenylation factor 99.9 3.7E-27 7.9E-32 241.7 15.5 265 224-529 102-380 (464)
23 KOG0284 Polyadenylation factor 99.9 4.9E-27 1.1E-31 240.8 16.1 277 67-480 96-379 (464)
24 KOG0286 G-protein beta subunit 99.9 1.4E-25 3E-30 221.2 25.6 278 202-527 49-343 (343)
25 KOG0276 Vesicle coat complex C 99.9 7.8E-26 1.7E-30 242.6 25.8 352 132-570 13-379 (794)
26 KOG0273 Beta-transducin family 99.9 2E-25 4.3E-30 233.0 26.2 325 66-481 177-523 (524)
27 KOG0645 WD40 repeat protein [G 99.9 9.2E-25 2E-29 213.4 26.7 270 205-528 11-310 (312)
28 KOG0306 WD40-repeat-containing 99.9 1.5E-23 3.2E-28 229.9 35.2 499 22-570 25-663 (888)
29 KOG0315 G-protein beta subunit 99.9 2.9E-24 6.2E-29 207.2 25.0 277 33-398 12-305 (311)
30 KOG0273 Beta-transducin family 99.9 1.1E-24 2.4E-29 227.5 23.6 317 21-420 180-523 (524)
31 KOG0296 Angio-associated migra 99.9 7.3E-24 1.6E-28 215.1 28.1 315 21-481 66-398 (399)
32 KOG0281 Beta-TrCP (transducin 99.9 1.4E-25 3E-30 225.0 13.5 271 133-483 198-479 (499)
33 KOG0295 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 222.5 17.6 261 206-512 106-394 (406)
34 KOG0266 WD40 repeat-containing 99.9 4.8E-24 1E-28 244.3 26.2 267 137-480 166-453 (456)
35 KOG1408 WD40 repeat protein [F 99.9 2.5E-22 5.5E-27 218.1 37.3 323 224-572 330-714 (1080)
36 KOG0281 Beta-TrCP (transducin 99.9 4.3E-25 9.3E-30 221.5 14.3 254 229-529 206-477 (499)
37 KOG0285 Pleiotropic regulator 99.9 4.8E-24 1E-28 215.2 21.8 275 254-570 148-438 (460)
38 KOG0266 WD40 repeat-containing 99.9 2.4E-23 5.1E-28 238.5 26.7 267 224-528 165-453 (456)
39 KOG0295 WD40 repeat-containing 99.9 2.6E-23 5.6E-28 210.9 21.8 237 204-480 146-405 (406)
40 KOG0285 Pleiotropic regulator 99.9 3.6E-23 7.9E-28 208.8 22.7 274 205-529 148-439 (460)
41 KOG0315 G-protein beta subunit 99.9 1.5E-22 3.2E-27 195.5 25.8 283 78-461 9-309 (311)
42 KOG0313 Microtubule binding pr 99.9 1.2E-22 2.5E-27 207.3 24.1 268 134-480 107-417 (423)
43 PLN00181 protein SPA1-RELATED; 99.9 3E-22 6.6E-27 246.7 32.3 229 228-480 543-792 (793)
44 KOG0278 Serine/threonine kinas 99.9 8.4E-24 1.8E-28 203.8 14.1 236 204-484 55-300 (334)
45 KOG0293 WD40 repeat-containing 99.9 9.3E-23 2E-27 209.4 22.4 278 21-381 226-513 (519)
46 KOG0265 U5 snRNP-specific prot 99.9 2.9E-22 6.2E-27 198.7 24.9 271 254-567 44-334 (338)
47 KOG0293 WD40 repeat-containing 99.9 7E-23 1.5E-27 210.3 18.9 223 224-481 275-513 (519)
48 PLN00181 protein SPA1-RELATED; 99.9 8.8E-22 1.9E-26 242.6 30.9 272 222-527 487-791 (793)
49 KOG0265 U5 snRNP-specific prot 99.9 7E-22 1.5E-26 196.0 22.6 266 204-512 43-326 (338)
50 KOG1408 WD40 repeat protein [F 99.9 2E-21 4.4E-26 211.1 27.9 415 20-482 166-714 (1080)
51 KOG0316 Conserved WD40 repeat- 99.9 1.5E-21 3.3E-26 186.9 22.4 265 254-561 14-290 (307)
52 cd00200 WD40 WD40 domain, foun 99.9 3.8E-21 8.1E-26 206.4 28.6 268 132-479 9-289 (289)
53 KOG0275 Conserved WD40 repeat- 99.9 4.2E-23 9.1E-28 205.2 11.3 265 222-526 217-506 (508)
54 cd00200 WD40 WD40 domain, foun 99.9 9.3E-21 2E-25 203.4 30.6 270 205-527 6-289 (289)
55 KOG0296 Angio-associated migra 99.9 1.1E-20 2.4E-25 192.1 28.1 311 222-570 68-397 (399)
56 KOG0640 mRNA cleavage stimulat 99.9 6.2E-22 1.3E-26 196.3 17.7 238 204-480 168-425 (430)
57 KOG0282 mRNA splicing factor [ 99.9 2.2E-22 4.7E-27 211.4 13.8 254 253-526 210-502 (503)
58 KOG1407 WD40 repeat protein [F 99.9 7.6E-21 1.7E-25 185.0 23.2 255 205-511 17-287 (313)
59 KOG0275 Conserved WD40 repeat- 99.9 2.6E-22 5.7E-27 199.6 12.5 283 255-569 211-507 (508)
60 KOG0292 Vesicle coat complex C 99.9 1.2E-20 2.6E-25 210.0 26.6 293 257-572 9-322 (1202)
61 KOG2048 WD40 repeat protein [G 99.9 4.2E-18 9.2E-23 186.1 41.7 419 19-525 25-547 (691)
62 KOG0283 WD40 repeat-containing 99.9 2.3E-20 5E-25 209.6 24.2 202 204-482 365-577 (712)
63 KOG0641 WD40 repeat protein [G 99.9 2.3E-19 5E-24 170.5 27.1 244 21-339 34-305 (350)
64 KOG2096 WD40 repeat protein [G 99.9 4.3E-20 9.2E-25 184.2 23.2 288 21-373 88-392 (420)
65 KOG0643 Translation initiation 99.9 5.5E-20 1.2E-24 179.5 23.0 254 202-480 4-316 (327)
66 PTZ00421 coronin; Provisional 99.9 5E-20 1.1E-24 210.2 26.6 200 253-484 71-293 (493)
67 KOG0305 Anaphase promoting com 99.9 5.9E-20 1.3E-24 201.7 25.0 264 31-422 188-463 (484)
68 KOG2096 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 181.0 24.6 324 41-478 62-399 (420)
69 KOG1539 WD repeat protein [Gen 99.9 1.2E-17 2.5E-22 186.2 43.1 456 19-571 34-606 (910)
70 KOG0277 Peroxisomal targeting 99.9 2.3E-20 5E-25 180.9 18.5 218 231-480 74-308 (311)
71 KOG0313 Microtubule binding pr 99.8 6.7E-20 1.5E-24 187.2 21.2 259 230-528 115-417 (423)
72 KOG0274 Cdc4 and related F-box 99.8 5.9E-20 1.3E-24 209.7 23.4 265 134-484 210-485 (537)
73 KOG1407 WD40 repeat protein [F 99.8 1.3E-19 2.8E-24 176.6 22.0 257 21-362 22-284 (313)
74 KOG0316 Conserved WD40 repeat- 99.8 7.5E-20 1.6E-24 175.4 17.6 234 205-484 14-260 (307)
75 KOG0277 Peroxisomal targeting 99.8 6.2E-20 1.4E-24 178.0 17.0 197 256-483 59-267 (311)
76 KOG0305 Anaphase promoting com 99.8 1.5E-19 3.3E-24 198.4 21.1 230 218-482 217-462 (484)
77 KOG0973 Histone transcription 99.8 3.3E-19 7.2E-24 205.1 24.6 234 206-483 67-357 (942)
78 KOG1063 RNA polymerase II elon 99.8 8.9E-18 1.9E-22 183.6 34.2 456 32-571 26-648 (764)
79 KOG0308 Conserved WD40 repeat- 99.8 3.6E-20 7.8E-25 200.7 14.9 222 228-482 35-286 (735)
80 PTZ00420 coronin; Provisional 99.8 1.8E-18 4E-23 198.1 29.3 216 238-484 52-296 (568)
81 KOG0973 Histone transcription 99.8 5.3E-19 1.2E-23 203.4 24.6 260 223-514 18-345 (942)
82 KOG0283 WD40 repeat-containing 99.8 1.9E-19 4.2E-24 202.2 20.3 245 255-571 265-576 (712)
83 KOG1539 WD repeat protein [Gen 99.8 5.4E-18 1.2E-22 188.8 30.9 379 27-480 166-647 (910)
84 KOG0288 WD40 repeat protein Ti 99.8 7.4E-20 1.6E-24 188.7 14.7 261 226-526 183-458 (459)
85 KOG0772 Uncharacterized conser 99.8 4E-19 8.7E-24 187.6 20.4 287 70-417 170-484 (641)
86 KOG2106 Uncharacterized conser 99.8 1.5E-17 3.2E-22 175.5 31.5 374 24-480 205-625 (626)
87 KOG0282 mRNA splicing factor [ 99.8 1.5E-19 3.2E-24 190.2 16.4 257 22-362 217-486 (503)
88 PTZ00421 coronin; Provisional 99.8 1.7E-18 3.8E-23 197.6 26.5 197 204-423 71-293 (493)
89 KOG0310 Conserved WD40 repeat- 99.8 9.2E-19 2E-23 184.7 22.1 286 242-569 11-307 (487)
90 KOG0640 mRNA cleavage stimulat 99.8 2.7E-19 5.8E-24 177.8 16.9 279 254-571 109-426 (430)
91 KOG0643 Translation initiation 99.8 7.1E-19 1.5E-23 171.8 19.1 283 253-571 6-317 (327)
92 KOG2048 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 176.3 36.8 427 68-571 26-505 (691)
93 KOG0294 WD40 repeat-containing 99.8 1.4E-18 3E-23 173.8 21.2 220 228-483 51-283 (362)
94 KOG1063 RNA polymerase II elon 99.8 1.7E-17 3.7E-22 181.4 31.0 430 25-529 151-699 (764)
95 KOG1274 WD40 repeat protein [G 99.8 4.4E-18 9.6E-23 191.8 26.3 211 65-344 11-225 (933)
96 KOG0310 Conserved WD40 repeat- 99.8 1.1E-18 2.4E-23 184.2 19.5 218 224-477 74-304 (487)
97 KOG1332 Vesicle coat complex C 99.8 2.7E-19 5.9E-24 172.6 13.6 245 254-574 8-289 (299)
98 KOG0300 WD40 repeat-containing 99.8 2.1E-18 4.5E-23 171.6 19.6 264 204-510 144-458 (481)
99 KOG1446 Histone H3 (Lys4) meth 99.8 2.1E-17 4.6E-22 166.3 26.8 277 67-419 14-302 (311)
100 KOG0289 mRNA splicing factor [ 99.8 5.2E-18 1.1E-22 176.0 23.0 231 227-489 228-470 (506)
101 KOG0274 Cdc4 and related F-box 99.8 3.5E-18 7.6E-23 195.2 24.2 262 261-572 213-483 (537)
102 KOG0641 WD40 repeat protein [G 99.8 6E-17 1.3E-21 154.1 28.2 286 256-570 31-348 (350)
103 PTZ00420 coronin; Provisional 99.8 1.2E-17 2.5E-22 191.6 25.8 217 204-464 70-318 (568)
104 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-16 3.1E-21 160.4 29.7 275 21-383 16-305 (311)
105 KOG0639 Transducin-like enhanc 99.8 4.5E-18 9.9E-23 178.8 17.7 229 205-480 462-703 (705)
106 KOG0647 mRNA export protein (c 99.8 2.9E-17 6.3E-22 163.4 22.3 194 256-483 26-230 (347)
107 KOG0299 U3 snoRNP-associated p 99.8 3.5E-17 7.6E-22 171.6 23.1 263 223-514 147-445 (479)
108 KOG0288 WD40 repeat protein Ti 99.8 2.1E-18 4.6E-23 178.1 13.3 261 138-478 183-458 (459)
109 KOG1332 Vesicle coat complex C 99.8 1.5E-17 3.2E-22 160.8 18.0 236 229-490 22-296 (299)
110 KOG0294 WD40 repeat-containing 99.8 4.3E-17 9.2E-22 163.2 20.8 241 254-576 40-286 (362)
111 KOG0269 WD40 repeat-containing 99.8 1.1E-17 2.3E-22 185.2 17.7 195 206-420 131-340 (839)
112 KOG0308 Conserved WD40 repeat- 99.8 5.9E-18 1.3E-22 183.7 15.0 230 225-479 80-325 (735)
113 KOG0278 Serine/threonine kinas 99.8 3.1E-18 6.7E-23 165.6 11.2 278 203-571 9-297 (334)
114 KOG0772 Uncharacterized conser 99.8 4.8E-17 1E-21 172.1 20.1 285 254-568 164-484 (641)
115 KOG0299 U3 snoRNP-associated p 99.7 5.2E-17 1.1E-21 170.3 19.7 273 254-560 139-444 (479)
116 KOG0264 Nucleosome remodeling 99.7 4.2E-16 9.2E-21 163.8 26.0 199 232-485 192-408 (422)
117 KOG0268 Sof1-like rRNA process 99.7 2.2E-17 4.7E-22 167.9 15.4 249 254-528 63-344 (433)
118 KOG2919 Guanine nucleotide-bin 99.7 8.5E-17 1.8E-21 161.3 19.3 220 227-472 120-360 (406)
119 KOG0301 Phospholipase A2-activ 99.7 5.6E-17 1.2E-21 177.6 19.6 213 228-481 23-249 (745)
120 KOG0301 Phospholipase A2-activ 99.7 8.6E-17 1.9E-21 176.2 20.9 213 228-485 69-292 (745)
121 KOG0289 mRNA splicing factor [ 99.7 2E-16 4.4E-21 164.4 21.5 216 261-512 224-450 (506)
122 KOG0639 Transducin-like enhanc 99.7 3.2E-17 7E-22 172.4 15.7 265 24-373 424-693 (705)
123 KOG0267 Microtubule severing p 99.7 4.1E-18 8.8E-23 187.0 7.9 215 227-475 37-261 (825)
124 KOG0647 mRNA export protein (c 99.7 4.9E-16 1.1E-20 154.8 21.2 270 208-512 27-311 (347)
125 KOG1273 WD40 repeat protein [G 99.7 3.5E-16 7.6E-21 156.3 20.2 237 256-529 23-280 (405)
126 KOG0264 Nucleosome remodeling 99.7 2.6E-16 5.6E-21 165.4 19.5 269 64-420 121-404 (422)
127 KOG0646 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 168.1 15.6 239 17-361 79-330 (476)
128 KOG0300 WD40 repeat-containing 99.7 1E-15 2.3E-20 152.6 19.5 198 253-484 144-389 (481)
129 KOG2106 Uncharacterized conser 99.7 5.1E-14 1.1E-18 149.1 33.0 402 22-480 157-580 (626)
130 KOG4283 Transcription-coupled 99.7 8.1E-16 1.8E-20 152.3 17.9 224 254-485 40-280 (397)
131 KOG0267 Microtubule severing p 99.7 4.2E-17 9.1E-22 179.1 9.6 237 236-512 10-254 (825)
132 KOG0268 Sof1-like rRNA process 99.7 1.4E-16 3.1E-21 162.0 12.6 271 68-381 67-345 (433)
133 KOG0646 WD40 repeat protein [G 99.7 1.8E-15 3.8E-20 159.3 21.0 229 238-484 59-310 (476)
134 KOG2055 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 159.1 20.5 276 20-379 214-510 (514)
135 KOG1274 WD40 repeat protein [G 99.7 1.3E-14 2.9E-19 164.0 26.3 264 22-362 16-282 (933)
136 KOG0650 WD40 repeat nucleolar 99.7 4.5E-15 9.7E-20 160.0 21.0 275 254-589 397-696 (733)
137 KOG2055 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 152.8 23.0 270 137-481 220-512 (514)
138 KOG4283 Transcription-coupled 99.6 1.5E-14 3.2E-19 143.5 20.3 290 133-480 44-364 (397)
139 KOG0269 WD40 repeat-containing 99.6 2.9E-15 6.3E-20 166.1 17.2 198 261-529 92-296 (839)
140 KOG1036 Mitotic spindle checkp 99.6 3.3E-14 7.1E-19 142.7 23.0 263 22-371 16-291 (323)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.6E-13 3.5E-18 149.6 30.9 272 32-390 2-288 (300)
142 KOG1034 Transcriptional repres 99.6 2.8E-14 6E-19 143.9 21.6 220 232-481 107-383 (385)
143 KOG2445 Nuclear pore complex c 99.6 3.7E-14 8E-19 141.9 21.1 254 206-480 11-317 (361)
144 KOG1036 Mitotic spindle checkp 99.6 2E-13 4.3E-18 137.1 25.7 270 68-472 14-294 (323)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.6E-13 3.4E-18 149.7 27.7 224 224-484 36-282 (300)
146 KOG0270 WD40 repeat-containing 99.6 2.1E-14 4.6E-19 150.3 15.0 220 229-483 191-451 (463)
147 KOG2445 Nuclear pore complex c 99.6 2.8E-13 6E-18 135.7 21.0 271 22-337 16-318 (361)
148 KOG4328 WD40 protein [Function 99.6 1.3E-13 2.8E-18 144.9 18.8 277 254-568 183-492 (498)
149 KOG1538 Uncharacterized conser 99.6 8.7E-14 1.9E-18 151.2 17.7 262 259-571 14-293 (1081)
150 KOG0303 Actin-binding protein 99.6 2.3E-13 5E-18 140.3 19.4 209 302-571 76-294 (472)
151 KOG4378 Nuclear protein COP1 [ 99.5 2.5E-13 5.4E-18 143.4 18.7 214 258-506 81-303 (673)
152 KOG0302 Ribosome Assembly prot 99.5 1.5E-13 3.2E-18 141.0 15.8 119 203-338 252-379 (440)
153 KOG0650 WD40 repeat nucleolar 99.5 2.3E-13 4.9E-18 147.0 17.4 313 25-478 406-732 (733)
154 KOG4328 WD40 protein [Function 99.5 6.2E-13 1.4E-17 139.8 19.9 276 66-417 185-492 (498)
155 KOG1524 WD40 repeat-containing 99.5 6.9E-13 1.5E-17 141.4 20.0 218 71-361 18-238 (737)
156 KOG1538 Uncharacterized conser 99.5 3.2E-13 7E-18 146.8 16.5 261 136-482 18-294 (1081)
157 KOG1445 Tumor-specific antigen 99.5 1.9E-13 4E-18 147.9 14.3 202 264-534 587-803 (1012)
158 KOG1034 Transcriptional repres 99.5 5E-13 1.1E-17 134.9 16.1 210 255-483 87-339 (385)
159 KOG1009 Chromatin assembly com 99.5 6.4E-12 1.4E-16 130.5 24.5 139 222-373 17-184 (434)
160 KOG0321 WD40 repeat-containing 99.5 8E-13 1.7E-17 144.1 18.5 249 204-484 96-394 (720)
161 KOG0302 Ribosome Assembly prot 99.5 5.6E-13 1.2E-17 136.8 16.1 200 254-483 148-380 (440)
162 KOG1273 WD40 repeat protein [G 99.5 5.2E-12 1.1E-16 126.8 22.5 278 68-423 24-325 (405)
163 KOG4378 Nuclear protein COP1 [ 99.5 3.3E-12 7.1E-17 135.1 20.2 286 33-401 5-301 (673)
164 KOG0307 Vesicle coat complex C 99.5 3.8E-13 8.3E-18 156.3 14.1 198 204-423 112-330 (1049)
165 PF04053 Coatomer_WDAD: Coatom 99.5 5.2E-13 1.1E-17 149.6 13.9 333 454-923 34-370 (443)
166 KOG0771 Prolactin regulatory e 99.4 1.6E-12 3.4E-17 136.2 16.1 206 20-338 145-355 (398)
167 KOG0307 Vesicle coat complex C 99.4 2.3E-13 5E-18 158.1 10.9 228 232-487 82-333 (1049)
168 COG2319 FOG: WD40 repeat [Gene 99.4 7.9E-10 1.7E-14 125.4 39.5 356 22-482 68-443 (466)
169 KOG0649 WD40 repeat protein [G 99.4 2E-11 4.3E-16 118.5 20.1 258 67-382 10-275 (325)
170 KOG1963 WD40 repeat protein [G 99.4 2.7E-10 5.9E-15 129.6 32.4 355 23-483 164-540 (792)
171 KOG2919 Guanine nucleotide-bin 99.4 8.8E-12 1.9E-16 125.7 17.2 228 29-328 121-361 (406)
172 KOG0270 WD40 repeat-containing 99.4 4.7E-12 1E-16 133.0 15.8 192 267-483 191-406 (463)
173 KOG0644 Uncharacterized conser 99.4 3.3E-13 7.1E-18 150.6 7.7 225 222-480 194-467 (1113)
174 KOG0321 WD40 repeat-containing 99.4 1.3E-11 2.8E-16 134.8 19.2 275 253-571 96-391 (720)
175 KOG0642 Cell-cycle nuclear pro 99.4 3.5E-12 7.5E-17 137.7 13.8 227 225-483 301-563 (577)
176 KOG1007 WD repeat protein TSSC 99.4 5.5E-11 1.2E-15 118.2 21.0 215 257-479 123-358 (370)
177 KOG0303 Actin-binding protein 99.4 3E-11 6.5E-16 124.9 19.3 198 254-484 78-297 (472)
178 KOG0771 Prolactin regulatory e 99.4 3.9E-12 8.4E-17 133.3 12.6 192 260-481 148-354 (398)
179 COG2319 FOG: WD40 repeat [Gene 99.4 1.1E-09 2.3E-14 124.3 33.7 228 226-485 73-318 (466)
180 KOG1009 Chromatin assembly com 99.4 1.1E-10 2.4E-15 121.5 22.2 78 254-340 120-198 (434)
181 KOG1007 WD repeat protein TSSC 99.4 3.8E-11 8.2E-16 119.4 17.7 254 20-337 64-361 (370)
182 KOG2111 Uncharacterized conser 99.3 1.6E-10 3.4E-15 116.9 22.3 232 25-339 11-258 (346)
183 PRK01742 tolB translocation pr 99.3 4.8E-11 1E-15 136.6 20.7 234 40-362 184-427 (429)
184 KOG0322 G-protein beta subunit 99.3 1.5E-11 3.2E-16 120.9 13.7 269 21-336 16-322 (323)
185 KOG1963 WD40 repeat protein [G 99.3 8.2E-09 1.8E-13 117.8 37.5 298 254-575 158-491 (792)
186 KOG4497 Uncharacterized conser 99.3 2.2E-10 4.7E-15 115.9 21.8 220 21-336 10-239 (447)
187 KOG1517 Guanine nucleotide bin 99.3 7E-11 1.5E-15 135.6 20.5 297 71-483 1068-1383(1387)
188 PF04762 IKI3: IKI3 family; I 99.3 2.3E-06 5.1E-11 105.3 61.5 354 66-482 74-457 (928)
189 PRK11028 6-phosphogluconolacto 99.3 1.6E-09 3.5E-14 120.1 30.8 237 33-338 5-259 (330)
190 KOG1188 WD40 repeat protein [G 99.3 3.8E-11 8.2E-16 122.3 15.4 228 229-480 83-345 (376)
191 KOG1240 Protein kinase contain 99.3 5.8E-10 1.3E-14 130.3 27.0 222 68-347 1049-1283(1431)
192 KOG2110 Uncharacterized conser 99.3 2.8E-09 6E-14 110.1 26.4 114 255-381 127-248 (391)
193 KOG1517 Guanine nucleotide bin 99.3 4.3E-10 9.4E-15 129.2 22.3 275 21-362 1066-1363(1387)
194 KOG4227 WD40 repeat protein [G 99.3 2.1E-10 4.6E-15 118.1 17.3 246 254-528 53-321 (609)
195 KOG1188 WD40 repeat protein [G 99.2 8.3E-11 1.8E-15 119.9 14.0 186 269-484 41-245 (376)
196 KOG0644 Uncharacterized conser 99.2 8.4E-12 1.8E-16 139.6 7.4 214 253-483 186-428 (1113)
197 KOG2394 WD40 protein DMR-N9 [G 99.2 3.7E-11 7.9E-16 128.9 11.8 145 208-362 219-386 (636)
198 PRK01742 tolB translocation pr 99.2 2.4E-10 5.2E-15 130.9 19.4 205 225-463 210-426 (429)
199 PRK11028 6-phosphogluconolacto 99.2 4.4E-09 9.6E-14 116.5 29.0 268 233-529 5-304 (330)
200 KOG1524 WD40 repeat-containing 99.2 1.5E-10 3.3E-15 123.8 14.3 168 268-471 75-245 (737)
201 KOG0649 WD40 repeat protein [G 99.2 3.6E-09 7.7E-14 103.1 22.3 238 137-419 17-273 (325)
202 KOG1587 Cytoplasmic dynein int 99.2 8E-10 1.7E-14 125.9 20.8 265 18-339 241-518 (555)
203 KOG2394 WD40 protein DMR-N9 [G 99.2 8.8E-10 1.9E-14 118.5 19.1 266 25-340 127-455 (636)
204 KOG2110 Uncharacterized conser 99.2 4E-09 8.6E-14 109.0 22.3 232 23-339 9-250 (391)
205 KOG4227 WD40 repeat protein [G 99.1 3.4E-09 7.3E-14 109.4 19.2 248 228-486 115-392 (609)
206 KOG1310 WD40 repeat protein [G 99.1 4.2E-10 9.1E-15 120.8 13.1 232 306-571 49-303 (758)
207 KOG1240 Protein kinase contain 99.1 7E-09 1.5E-13 121.5 23.4 276 4-340 1031-1337(1431)
208 KOG0322 G-protein beta subunit 99.1 2.6E-09 5.6E-14 105.4 16.0 135 232-379 167-321 (323)
209 KOG1445 Tumor-specific antigen 99.1 2.3E-09 5E-14 116.8 16.4 117 205-339 624-752 (1012)
210 KOG0290 Conserved WD40 repeat- 99.1 1.7E-08 3.7E-13 100.9 21.1 194 255-474 148-358 (364)
211 PF08662 eIF2A: Eukaryotic tra 99.1 5.3E-09 1.2E-13 105.4 18.0 112 208-340 59-182 (194)
212 KOG1523 Actin-related protein 99.1 5E-09 1.1E-13 106.2 17.3 231 258-510 11-263 (361)
213 KOG1587 Cytoplasmic dynein int 99.1 5.2E-09 1.1E-13 119.4 19.0 239 222-482 246-517 (555)
214 PRK03629 tolB translocation pr 99.1 1.4E-08 3E-13 116.2 22.2 234 40-361 179-428 (429)
215 KOG0290 Conserved WD40 repeat- 99.0 5E-09 1.1E-13 104.7 15.7 204 64-338 93-319 (364)
216 KOG2139 WD40 repeat protein [G 99.0 3.2E-09 6.9E-14 109.1 14.6 187 261-481 103-309 (445)
217 KOG0642 Cell-cycle nuclear pro 99.0 3.4E-09 7.4E-14 115.0 15.3 256 22-343 297-567 (577)
218 KOG1523 Actin-related protein 99.0 1.1E-08 2.4E-13 103.8 17.9 240 209-488 11-286 (361)
219 PF08662 eIF2A: Eukaryotic tra 99.0 1.1E-08 2.4E-13 103.1 18.0 98 257-373 59-162 (194)
220 KOG2139 WD40 repeat protein [G 99.0 4.1E-08 9E-13 101.1 21.5 173 254-475 193-368 (445)
221 PRK05137 tolB translocation pr 99.0 8.5E-08 1.8E-12 110.3 24.7 196 253-487 197-418 (435)
222 KOG2321 WD40 repeat protein [G 99.0 6.2E-08 1.4E-12 105.3 21.0 130 257-391 175-312 (703)
223 KOG1272 WD40-repeat-containing 98.9 1E-09 2.2E-14 116.1 6.5 219 221-479 132-360 (545)
224 KOG2111 Uncharacterized conser 98.9 3E-07 6.5E-12 93.6 23.5 181 32-287 59-257 (346)
225 KOG1272 WD40-repeat-containing 98.9 2.7E-09 5.9E-14 112.9 9.1 202 64-347 127-333 (545)
226 KOG2315 Predicted translation 98.9 5.1E-07 1.1E-11 98.5 25.2 305 23-419 38-389 (566)
227 PRK04922 tolB translocation pr 98.9 9.1E-08 2E-12 109.9 21.2 232 41-360 185-432 (433)
228 KOG1310 WD40 repeat protein [G 98.9 1.5E-08 3.2E-13 109.2 13.3 118 203-338 45-179 (758)
229 PRK03629 tolB translocation pr 98.9 1E-07 2.2E-12 109.1 20.6 206 221-462 201-427 (429)
230 PRK02889 tolB translocation pr 98.9 1.3E-07 2.9E-12 108.2 21.1 172 224-409 201-389 (427)
231 PF15492 Nbas_N: Neuroblastoma 98.9 3.6E-07 7.8E-12 92.5 20.8 71 25-98 3-74 (282)
232 KOG4497 Uncharacterized conser 98.9 1.3E-08 2.7E-13 103.4 10.4 129 222-362 12-145 (447)
233 PRK02889 tolB translocation pr 98.8 4.3E-07 9.2E-12 104.1 23.3 73 254-336 192-269 (427)
234 PRK04922 tolB translocation pr 98.8 3.5E-07 7.7E-12 105.1 22.2 204 242-483 186-413 (433)
235 PRK05137 tolB translocation pr 98.8 3.9E-07 8.4E-12 104.9 20.1 147 222-384 205-369 (435)
236 PF02239 Cytochrom_D1: Cytochr 98.7 7.6E-06 1.6E-10 91.0 29.1 283 222-531 40-349 (369)
237 PF02239 Cytochrom_D1: Cytochr 98.7 2.7E-06 5.9E-11 94.6 24.5 283 25-389 42-355 (369)
238 COG5354 Uncharacterized protei 98.7 9.2E-06 2E-10 87.9 26.1 171 258-474 224-421 (561)
239 KOG4547 WD40 repeat-containing 98.7 3.9E-07 8.5E-12 100.2 15.7 205 76-338 2-221 (541)
240 KOG1354 Serine/threonine prote 98.7 1.1E-06 2.5E-11 90.1 17.8 258 67-348 25-313 (433)
241 PRK04792 tolB translocation pr 98.7 3.9E-06 8.5E-11 96.5 24.4 123 225-360 312-446 (448)
242 KOG4547 WD40 repeat-containing 98.7 1.8E-06 3.8E-11 95.2 20.1 122 268-401 70-192 (541)
243 KOG0974 WD-repeat protein WDR6 98.6 3.1E-07 6.7E-12 106.9 14.7 141 226-382 141-289 (967)
244 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.6E-05 3.5E-10 86.4 26.6 77 261-347 252-340 (352)
245 KOG1912 WD40 repeat protein [G 98.6 2.9E-05 6.4E-10 87.7 28.8 464 6-573 4-553 (1062)
246 KOG1334 WD40 repeat protein [G 98.6 8.2E-07 1.8E-11 95.1 15.3 286 66-384 141-469 (559)
247 KOG3881 Uncharacterized conser 98.6 2.1E-06 4.5E-11 89.9 17.6 143 232-387 163-326 (412)
248 KOG0974 WD-repeat protein WDR6 98.6 7.4E-07 1.6E-11 103.9 15.8 192 73-339 93-290 (967)
249 COG2706 3-carboxymuconate cycl 98.6 0.00023 5E-09 74.7 32.4 212 260-529 92-321 (346)
250 KOG2321 WD40 repeat protein [G 98.6 5.2E-06 1.1E-10 90.7 20.8 238 254-529 48-302 (703)
251 KOG1334 WD40 repeat protein [G 98.6 3.4E-07 7.4E-12 97.9 11.5 285 129-420 139-466 (559)
252 KOG1354 Serine/threonine prote 98.6 3.9E-06 8.4E-11 86.3 18.6 287 22-339 28-361 (433)
253 PRK01029 tolB translocation pr 98.6 9.9E-06 2.1E-10 92.5 24.2 125 225-361 287-425 (428)
254 PF10282 Lactonase: Lactonase, 98.6 0.00022 4.8E-09 79.3 34.4 271 23-342 40-329 (345)
255 TIGR02800 propeller_TolB tol-p 98.6 4.3E-06 9.4E-11 96.0 20.9 183 254-474 186-386 (417)
256 KOG1409 Uncharacterized conser 98.5 1.8E-06 3.9E-11 88.8 13.6 201 254-484 21-273 (404)
257 PRK01029 tolB translocation pr 98.5 1.2E-05 2.7E-10 91.7 22.2 106 224-336 190-310 (428)
258 PRK00178 tolB translocation pr 98.5 1.5E-05 3.2E-10 91.9 22.9 116 254-385 195-323 (430)
259 KOG3881 Uncharacterized conser 98.5 5.9E-06 1.3E-10 86.6 17.0 215 30-318 115-342 (412)
260 KOG0309 Conserved WD40 repeat- 98.4 5E-07 1.1E-11 100.8 8.2 201 204-421 110-340 (1081)
261 PF10282 Lactonase: Lactonase, 98.4 0.00068 1.5E-08 75.4 33.2 269 40-362 13-303 (345)
262 COG2706 3-carboxymuconate cycl 98.4 0.00097 2.1E-08 70.1 30.9 250 33-337 6-274 (346)
263 PF04762 IKI3: IKI3 family; I 98.4 0.00017 3.6E-09 89.2 29.7 218 207-487 74-339 (928)
264 KOG2041 WD40 repeat protein [G 98.4 0.00037 8E-09 78.2 28.7 218 66-336 13-246 (1189)
265 TIGR02800 propeller_TolB tol-p 98.4 1.3E-05 2.7E-10 92.1 18.6 146 224-385 195-358 (417)
266 PF00400 WD40: WD domain, G-be 98.3 1.1E-06 2.5E-11 63.0 5.6 38 290-335 2-39 (39)
267 KOG2315 Predicted translation 98.3 3.6E-05 7.8E-10 84.4 19.0 114 206-341 268-394 (566)
268 PRK04792 tolB translocation pr 98.3 3.4E-05 7.4E-10 88.8 20.2 129 222-362 221-361 (448)
269 PRK00178 tolB translocation pr 98.3 3.4E-05 7.4E-10 88.8 20.3 147 223-385 203-367 (430)
270 KOG2041 WD40 repeat protein [G 98.3 5.6E-05 1.2E-09 84.5 19.8 148 205-362 11-168 (1189)
271 COG4946 Uncharacterized protei 98.3 0.00086 1.9E-08 72.2 27.8 124 228-362 369-500 (668)
272 KOG2314 Translation initiation 98.3 9.6E-05 2.1E-09 80.8 20.8 76 21-105 212-298 (698)
273 KOG1409 Uncharacterized conser 98.2 0.0001 2.3E-09 76.2 19.5 241 69-384 26-273 (404)
274 KOG4532 WD40-like repeat conta 98.2 0.00019 4.2E-09 71.8 19.4 201 71-341 71-286 (344)
275 PF15492 Nbas_N: Neuroblastoma 98.2 0.00062 1.3E-08 69.5 23.4 192 259-482 46-260 (282)
276 KOG1064 RAVE (regulator of V-A 98.2 8E-06 1.7E-10 99.8 10.7 182 255-482 2206-2399(2439)
277 KOG2314 Translation initiation 98.1 0.00084 1.8E-08 73.7 24.6 303 224-561 216-557 (698)
278 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0041 8.8E-08 68.0 30.2 278 40-389 27-338 (352)
279 KOG3914 WD repeat protein WDR4 98.1 1.8E-05 3.9E-10 83.5 11.5 97 241-346 133-232 (390)
280 KOG0280 Uncharacterized conser 98.1 4.6E-05 1E-09 77.2 13.7 201 71-339 73-286 (339)
281 KOG1064 RAVE (regulator of V-A 98.0 2.4E-05 5.1E-10 95.9 10.8 185 134-390 2210-2407(2439)
282 KOG4532 WD40-like repeat conta 98.0 0.00033 7.1E-09 70.2 16.9 171 261-489 163-339 (344)
283 KOG0280 Uncharacterized conser 98.0 0.00036 7.8E-09 70.9 17.1 114 212-338 125-242 (339)
284 KOG4190 Uncharacterized conser 98.0 1.5E-05 3.1E-10 86.4 7.2 170 254-484 732-909 (1034)
285 KOG0309 Conserved WD40 repeat- 97.9 7.9E-05 1.7E-09 83.8 12.0 95 254-358 111-209 (1081)
286 TIGR03300 assembly_YfgL outer 97.9 0.0065 1.4E-07 68.6 26.9 249 267-569 104-377 (377)
287 PLN02919 haloacid dehalogenase 97.8 0.0041 8.9E-08 78.7 27.1 116 224-341 745-892 (1057)
288 PRK04043 tolB translocation pr 97.8 0.0013 2.9E-08 74.7 20.5 90 261-362 192-288 (419)
289 PRK04043 tolB translocation pr 97.8 0.0015 3.2E-08 74.2 20.8 103 225-339 283-402 (419)
290 PF00400 WD40: WD domain, G-be 97.8 4.1E-05 9E-10 54.7 5.3 35 445-479 4-39 (39)
291 KOG4714 Nucleoporin [Nuclear s 97.8 0.0003 6.4E-09 70.3 12.2 152 306-482 88-255 (319)
292 TIGR03300 assembly_YfgL outer 97.7 0.0052 1.1E-07 69.4 23.7 144 269-422 191-340 (377)
293 PLN02919 haloacid dehalogenase 97.7 0.004 8.6E-08 78.8 24.6 246 224-484 573-891 (1057)
294 PF04841 Vps16_N: Vps16, N-ter 97.7 0.022 4.7E-07 64.7 28.3 67 22-97 31-109 (410)
295 KOG3914 WD repeat protein WDR4 97.7 0.0003 6.5E-09 74.6 11.1 79 306-389 150-231 (390)
296 PF11768 DUF3312: Protein of u 97.7 0.00072 1.6E-08 75.7 14.6 74 256-340 258-332 (545)
297 KOG4190 Uncharacterized conser 97.7 0.00031 6.8E-09 76.4 11.3 172 129-346 732-915 (1034)
298 KOG1912 WD40 repeat protein [G 97.6 0.006 1.3E-07 69.7 20.0 65 33-101 81-147 (1062)
299 PF06433 Me-amine-dh_H: Methyl 97.6 0.023 5E-07 60.8 23.5 260 23-348 39-331 (342)
300 COG5354 Uncharacterized protei 97.6 0.018 3.8E-07 63.2 22.7 127 224-362 38-185 (561)
301 KOG3621 WD40 repeat-containing 97.5 0.0061 1.3E-07 69.4 19.1 111 224-338 39-155 (726)
302 KOG4640 Anaphase-promoting com 97.5 0.00032 6.8E-09 78.5 8.4 72 261-342 25-97 (665)
303 COG5170 CDC55 Serine/threonine 97.5 0.00065 1.4E-08 69.2 9.9 257 65-348 24-321 (460)
304 KOG1645 RING-finger-containing 97.4 0.0079 1.7E-07 64.0 17.7 76 253-338 189-267 (463)
305 KOG4714 Nucleoporin [Nuclear s 97.4 0.00047 1E-08 68.8 8.3 74 258-339 180-256 (319)
306 COG4946 Uncharacterized protei 97.4 0.014 3E-07 63.3 19.5 122 254-390 356-486 (668)
307 KOG2066 Vacuolar assembly/sort 97.4 0.0023 5E-08 73.6 14.5 150 257-485 39-191 (846)
308 KOG2695 WD40 repeat protein [G 97.3 0.00062 1.4E-08 70.6 8.0 120 258-390 253-385 (425)
309 KOG1920 IkappaB kinase complex 97.3 0.091 2E-06 63.8 26.8 276 258-572 70-366 (1265)
310 PF07433 DUF1513: Protein of u 97.3 0.025 5.4E-07 59.8 19.6 94 261-362 9-110 (305)
311 KOG2114 Vacuolar assembly/sort 97.3 0.03 6.5E-07 65.3 21.1 137 258-405 126-268 (933)
312 PF04053 Coatomer_WDAD: Coatom 97.1 0.12 2.6E-06 58.7 24.6 70 842-921 334-410 (443)
313 COG5170 CDC55 Serine/threonine 97.1 0.011 2.4E-07 60.6 14.1 282 24-336 31-366 (460)
314 KOG2066 Vacuolar assembly/sort 97.1 0.0035 7.5E-08 72.2 11.3 148 134-347 41-197 (846)
315 PF04841 Vps16_N: Vps16, N-ter 97.1 0.36 7.8E-06 54.8 27.7 51 279-340 62-112 (410)
316 PF07433 DUF1513: Protein of u 97.0 0.13 2.8E-06 54.5 21.6 61 255-327 214-276 (305)
317 KOG4640 Anaphase-promoting com 97.0 0.0025 5.5E-08 71.5 9.2 95 208-317 20-115 (665)
318 PF08450 SGL: SMP-30/Gluconola 96.9 0.14 3.1E-06 53.8 21.4 128 224-358 91-232 (246)
319 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0011 2.5E-08 76.2 4.2 189 254-483 1098-1293(1516)
320 KOG0882 Cyclophilin-related pe 96.8 0.0042 9.2E-08 66.8 8.1 215 255-486 7-236 (558)
321 smart00320 WD40 WD40 repeats. 96.7 0.0036 7.8E-08 43.2 5.4 30 306-335 11-40 (40)
322 PRK11138 outer membrane biogen 96.7 0.66 1.4E-05 52.7 26.0 66 268-346 120-187 (394)
323 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.051 1.1E-06 48.2 12.5 95 225-332 9-109 (111)
324 KOG1920 IkappaB kinase complex 96.6 0.25 5.4E-06 60.2 21.7 236 307-570 68-321 (1265)
325 KOG3617 WD40 and TPR repeat-co 96.5 0.015 3.1E-07 67.2 10.7 69 260-337 63-131 (1416)
326 KOG2695 WD40 repeat protein [G 96.5 0.0061 1.3E-07 63.5 7.0 112 227-347 261-386 (425)
327 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.65 1.4E-05 51.8 23.6 75 21-97 44-131 (353)
328 PRK11138 outer membrane biogen 96.3 0.77 1.7E-05 52.1 23.6 74 269-345 206-282 (394)
329 KOG2114 Vacuolar assembly/sort 96.2 0.5 1.1E-05 55.6 20.4 80 257-346 171-252 (933)
330 PF11768 DUF3312: Protein of u 96.1 0.027 5.8E-07 63.5 9.8 71 21-100 261-332 (545)
331 KOG0882 Cyclophilin-related pe 96.1 0.048 1E-06 59.0 11.1 246 228-485 18-309 (558)
332 PF13360 PQQ_2: PQQ-like domai 96.1 0.3 6.6E-06 50.8 17.6 112 266-391 34-150 (238)
333 PF13360 PQQ_2: PQQ-like domai 96.0 1.4 2.9E-05 45.8 22.2 63 276-346 1-63 (238)
334 COG0823 TolB Periplasmic compo 95.9 0.12 2.6E-06 58.5 14.4 110 26-163 199-317 (425)
335 KOG1897 Damage-specific DNA bi 95.9 5.9 0.00013 47.9 33.0 81 67-163 530-616 (1096)
336 KOG1832 HIV-1 Vpr-binding prot 95.8 0.0097 2.1E-07 69.0 4.9 147 306-483 1100-1257(1516)
337 PF00930 DPPIV_N: Dipeptidyl p 95.8 0.74 1.6E-05 51.3 19.9 222 277-529 22-268 (353)
338 PF08596 Lgl_C: Lethal giant l 95.7 2.1 4.5E-05 48.2 22.5 94 70-163 4-118 (395)
339 smart00320 WD40 WD40 repeats. 95.4 0.024 5.1E-07 38.8 4.2 31 254-284 9-40 (40)
340 PF08450 SGL: SMP-30/Gluconola 95.4 4.1 9E-05 42.6 26.7 125 229-362 11-145 (246)
341 PF06433 Me-amine-dh_H: Methyl 95.3 3.6 7.7E-05 44.5 21.5 162 220-390 147-329 (342)
342 KOG1275 PAB-dependent poly(A) 95.2 0.42 9.2E-06 56.5 15.0 92 239-336 245-341 (1118)
343 KOG2079 Vacuolar assembly/sort 95.2 0.047 1E-06 65.3 7.6 76 265-348 96-171 (1206)
344 PRK02888 nitrous-oxide reducta 95.0 0.66 1.4E-05 54.0 16.1 104 224-327 326-451 (635)
345 KOG1275 PAB-dependent poly(A) 95.0 0.2 4.3E-06 59.1 11.7 174 268-479 147-340 (1118)
346 KOG3617 WD40 and TPR repeat-co 94.9 0.11 2.5E-06 60.3 9.2 105 261-381 20-131 (1416)
347 COG0823 TolB Periplasmic compo 94.9 0.82 1.8E-05 51.9 16.3 93 226-328 289-390 (425)
348 PF12894 Apc4_WD40: Anaphase-p 94.6 0.093 2E-06 38.9 5.2 33 307-339 11-43 (47)
349 KOG3621 WD40 repeat-containing 94.6 0.33 7.1E-06 55.9 11.9 103 257-372 33-142 (726)
350 KOG1008 Uncharacterized conser 94.5 0.02 4.4E-07 64.5 2.2 75 258-339 57-139 (783)
351 PF06977 SdiA-regulated: SdiA- 94.5 6.2 0.00013 41.2 20.3 124 210-338 23-148 (248)
352 KOG2079 Vacuolar assembly/sort 94.3 0.51 1.1E-05 56.9 13.1 69 257-336 130-202 (1206)
353 PF12894 Apc4_WD40: Anaphase-p 94.2 0.13 2.9E-06 38.1 5.3 29 258-286 12-41 (47)
354 COG3490 Uncharacterized protei 93.6 5.6 0.00012 41.3 17.1 62 263-334 120-186 (366)
355 COG3391 Uncharacterized conser 93.0 15 0.00032 41.4 21.9 106 225-341 80-194 (381)
356 KOG1645 RING-finger-containing 92.9 5.5 0.00012 43.2 16.7 233 70-337 196-461 (463)
357 PRK13616 lipoprotein LpqB; Pro 92.6 4.9 0.00011 47.8 17.9 108 223-333 354-472 (591)
358 KOG4441 Proteins containing BT 92.4 3.7 8E-05 48.7 16.6 66 462-528 474-545 (571)
359 PRK13616 lipoprotein LpqB; Pro 92.4 4.9 0.00011 47.8 17.5 91 258-362 350-459 (591)
360 PF14783 BBS2_Mid: Ciliary BBS 92.2 1.5 3.3E-05 39.0 9.6 61 263-336 9-70 (111)
361 PF08553 VID27: VID27 cytoplas 91.7 1.3 2.8E-05 53.6 11.6 93 233-336 545-646 (794)
362 PF08596 Lgl_C: Lethal giant l 91.5 3.2 6.9E-05 46.7 14.0 78 257-336 86-172 (395)
363 KOG2006 WD40 repeat protein [G 91.2 0.19 4.2E-06 60.2 4.1 118 755-895 794-927 (1023)
364 PF15390 DUF4613: Domain of un 90.9 21 0.00046 41.1 19.1 60 261-327 343-404 (671)
365 PF10647 Gmad1: Lipoprotein Lp 90.8 16 0.00034 38.5 17.7 95 258-362 25-123 (253)
366 cd00216 PQQ_DH Dehydrogenases 90.4 42 0.00091 39.2 27.4 71 269-346 111-192 (488)
367 KOG2444 WD40 repeat protein [G 90.2 0.79 1.7E-05 45.9 6.7 99 230-337 70-177 (238)
368 PRK02888 nitrous-oxide reducta 89.7 7.9 0.00017 45.4 15.1 59 316-382 285-352 (635)
369 KOG3616 Selective LIM binding 89.6 1.5 3.2E-05 50.7 9.0 25 623-648 207-231 (1636)
370 PF06977 SdiA-regulated: SdiA- 87.5 40 0.00086 35.3 22.1 212 21-274 23-239 (248)
371 PF00780 CNH: CNH domain; Int 87.4 43 0.00093 35.5 27.3 62 266-339 5-66 (275)
372 PF03178 CPSF_A: CPSF A subuni 86.9 52 0.0011 36.0 24.5 67 261-334 177-262 (321)
373 KOG2444 WD40 repeat protein [G 86.7 1 2.2E-05 45.2 4.8 74 267-348 69-143 (238)
374 KOG1008 Uncharacterized conser 86.6 0.36 7.9E-06 54.8 1.9 141 222-379 72-223 (783)
375 COG3204 Uncharacterized protei 86.1 50 0.0011 34.9 20.1 127 208-339 85-212 (316)
376 PF10168 Nup88: Nuclear pore c 86.1 2.6 5.6E-05 51.0 8.8 76 22-97 87-179 (717)
377 KOG1898 Splicing factor 3b, su 85.6 1E+02 0.0022 38.2 31.3 76 19-99 537-620 (1205)
378 PF11635 Med16: Mediator compl 85.6 44 0.00095 41.4 19.3 74 258-332 260-345 (753)
379 KOG1897 Damage-specific DNA bi 85.0 1.1E+02 0.0023 37.8 36.3 80 261-345 588-667 (1096)
380 PF02897 Peptidase_S9_N: Proly 84.8 77 0.0017 36.0 31.4 57 261-328 128-190 (414)
381 KOG4649 PQQ (pyrrolo-quinoline 84.0 56 0.0012 33.8 27.7 55 225-280 100-159 (354)
382 PF15390 DUF4613: Domain of un 83.9 31 0.00068 39.8 15.2 33 450-482 153-187 (671)
383 PF12657 TFIIIC_delta: Transcr 83.8 3.9 8.5E-05 40.3 7.6 29 69-97 87-121 (173)
384 KOG4649 PQQ (pyrrolo-quinoline 83.6 58 0.0013 33.6 25.3 83 267-360 62-145 (354)
385 KOG2280 Vacuolar assembly/sort 83.5 69 0.0015 38.2 18.0 37 852-888 726-768 (829)
386 PF10313 DUF2415: Uncharacteri 83.0 3.5 7.6E-05 29.8 4.8 31 308-338 1-34 (43)
387 PF00780 CNH: CNH domain; Int 82.7 70 0.0015 33.9 24.5 60 30-98 6-65 (275)
388 PF03178 CPSF_A: CPSF A subuni 82.5 69 0.0015 34.9 17.8 177 278-481 2-202 (321)
389 KOG2377 Uncharacterized conser 82.0 93 0.002 34.9 23.7 71 257-337 66-140 (657)
390 KOG2395 Protein involved in va 81.9 40 0.00087 38.3 14.8 146 313-480 339-499 (644)
391 PF02897 Peptidase_S9_N: Proly 81.2 1E+02 0.0023 34.9 23.8 109 224-338 129-261 (414)
392 PF10647 Gmad1: Lipoprotein Lp 80.7 14 0.00031 38.9 10.9 69 261-336 70-143 (253)
393 KOG3630 Nuclear pore complex, 80.5 19 0.00042 44.5 12.6 106 206-324 153-260 (1405)
394 PF12234 Rav1p_C: RAVE protein 80.0 16 0.00035 43.2 11.8 104 225-336 36-155 (631)
395 PF10313 DUF2415: Uncharacteri 79.5 5.3 0.00012 28.9 4.8 30 453-482 1-34 (43)
396 PF08553 VID27: VID27 cytoplas 79.3 21 0.00045 43.6 12.7 142 318-480 492-646 (794)
397 PF10168 Nup88: Nuclear pore c 79.3 33 0.00073 41.8 14.6 79 259-338 86-180 (717)
398 KOG2280 Vacuolar assembly/sort 79.1 1.2E+02 0.0026 36.2 18.0 51 278-339 64-114 (829)
399 PRK13684 Ycf48-like protein; P 78.5 72 0.0016 35.2 16.0 95 258-362 173-271 (334)
400 KOG1916 Nuclear protein, conta 77.2 0.65 1.4E-05 54.9 -0.5 64 263-336 190-264 (1283)
401 KOG2395 Protein involved in va 76.5 11 0.00025 42.5 8.6 91 235-336 399-499 (644)
402 COG3490 Uncharacterized protei 76.3 1.1E+02 0.0023 32.3 16.5 65 257-334 279-345 (366)
403 KOG3630 Nuclear pore complex, 75.6 40 0.00088 41.9 13.3 61 453-514 199-261 (1405)
404 PF11715 Nup160: Nucleoporin N 75.2 12 0.00027 44.4 9.5 40 307-346 214-257 (547)
405 PF07676 PD40: WD40-like Beta 74.9 7.4 0.00016 27.3 4.7 23 451-473 7-29 (39)
406 PF14781 BBS2_N: Ciliary BBSom 73.6 78 0.0017 29.4 12.5 114 263-388 5-132 (136)
407 PF12341 DUF3639: Protein of u 73.1 5.4 0.00012 25.7 3.0 24 70-95 4-27 (27)
408 TIGR02604 Piru_Ver_Nterm putat 72.7 50 0.0011 36.9 13.1 66 258-326 73-142 (367)
409 PF14781 BBS2_N: Ciliary BBSom 72.5 81 0.0017 29.3 11.7 68 267-346 63-134 (136)
410 COG3386 Gluconolactonase [Carb 71.5 59 0.0013 35.3 12.6 91 261-358 167-262 (307)
411 TIGR02604 Piru_Ver_Nterm putat 69.9 1.2E+02 0.0026 33.9 15.3 71 257-337 14-99 (367)
412 PF05694 SBP56: 56kDa selenium 69.5 1.5E+02 0.0032 33.6 15.0 66 261-326 316-392 (461)
413 PHA02713 hypothetical protein; 68.9 1E+02 0.0022 36.7 15.2 28 463-490 512-542 (557)
414 PF07676 PD40: WD40-like Beta 68.3 7.4 0.00016 27.3 3.4 28 67-94 8-38 (39)
415 PF08728 CRT10: CRT10; InterP 68.3 1.8E+02 0.0039 35.2 16.5 73 258-336 164-245 (717)
416 KOG4460 Nuclear pore complex, 68.0 47 0.001 37.7 10.8 78 25-102 109-203 (741)
417 PF07569 Hira: TUP1-like enhan 66.9 22 0.00049 36.4 7.9 74 264-339 18-97 (219)
418 PF07995 GSDH: Glucose / Sorbo 66.6 1.1E+02 0.0025 33.5 14.1 24 305-330 113-136 (331)
419 COG4590 ABC-type uncharacteriz 65.9 41 0.0009 37.3 9.8 29 69-98 222-250 (733)
420 COG3391 Uncharacterized conser 65.9 2.3E+02 0.005 31.8 22.6 114 224-346 165-292 (381)
421 TIGR03606 non_repeat_PQQ dehyd 65.0 77 0.0017 36.3 12.3 100 224-327 35-165 (454)
422 PHA03098 kelch-like protein; P 63.7 1.8E+02 0.0039 34.4 16.1 28 463-490 487-520 (534)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 63.3 20 0.00044 40.4 7.3 94 261-359 6-117 (415)
424 PLN00033 photosystem II stabil 63.1 1.4E+02 0.003 33.8 13.9 113 225-345 245-363 (398)
425 KOG2377 Uncharacterized conser 61.6 17 0.00038 40.2 6.0 70 25-100 28-99 (657)
426 KOG4499 Ca2+-binding protein R 60.6 1.6E+02 0.0035 30.2 11.9 94 261-359 162-262 (310)
427 KOG4441 Proteins containing BT 59.7 3.1E+02 0.0068 32.7 16.8 67 460-528 424-498 (571)
428 PF14655 RAB3GAP2_N: Rab3 GTPa 59.4 39 0.00085 38.2 8.7 81 261-346 312-407 (415)
429 PLN00033 photosystem II stabil 58.3 2.4E+02 0.0053 31.8 14.8 112 261-388 243-362 (398)
430 KOG4460 Nuclear pore complex, 57.1 1.2E+02 0.0027 34.6 11.6 34 309-342 167-203 (741)
431 PF10214 Rrn6: RNA polymerase 56.2 3E+02 0.0066 34.2 16.6 101 260-361 149-257 (765)
432 PF12234 Rav1p_C: RAVE protein 56.0 1.5E+02 0.0033 35.4 13.0 72 257-336 30-103 (631)
433 cd00216 PQQ_DH Dehydrogenases 55.5 3.9E+02 0.0086 31.1 25.9 75 269-347 62-138 (488)
434 KOG1916 Nuclear protein, conta 53.7 11 0.00024 45.2 3.2 114 137-287 190-324 (1283)
435 PF07995 GSDH: Glucose / Sorbo 53.2 3.4E+02 0.0074 29.7 30.3 72 255-331 251-329 (331)
436 COG3386 Gluconolactonase [Carb 52.2 3.4E+02 0.0074 29.4 19.2 26 457-482 217-244 (307)
437 PF14761 HPS3_N: Hermansky-Pud 51.7 61 0.0013 32.7 7.6 63 25-94 23-92 (215)
438 PF12657 TFIIIC_delta: Transcr 51.3 67 0.0014 31.5 8.0 33 307-339 85-123 (173)
439 PF14870 PSII_BNR: Photosynthe 49.8 3.7E+02 0.008 29.1 27.2 119 257-389 144-268 (302)
440 KOG1896 mRNA cleavage and poly 49.7 6.8E+02 0.015 32.2 21.1 27 261-287 1186-1214(1366)
441 KOG4499 Ca2+-binding protein R 48.6 87 0.0019 32.0 8.0 48 261-317 216-263 (310)
442 PF07569 Hira: TUP1-like enhan 48.4 76 0.0017 32.5 8.1 72 22-97 13-95 (219)
443 PF14761 HPS3_N: Hermansky-Pud 48.1 55 0.0012 33.1 6.7 45 275-328 35-80 (215)
444 PRK13684 Ycf48-like protein; P 47.6 4.2E+02 0.0091 29.1 23.1 48 438-488 247-295 (334)
445 PRK10115 protease 2; Provision 47.0 6.3E+02 0.014 31.0 26.4 56 24-88 131-192 (686)
446 PF14559 TPR_19: Tetratricopep 45.4 51 0.0011 26.0 5.2 49 874-924 1-49 (68)
447 PF14870 PSII_BNR: Photosynthe 43.9 4.5E+02 0.0098 28.4 23.3 249 207-488 15-268 (302)
448 PF01417 ENTH: ENTH domain; I 43.5 1.4E+02 0.0029 27.5 8.3 101 794-912 4-121 (125)
449 PF04840 Vps16_C: Vps16, C-ter 43.3 1.7E+02 0.0036 32.0 10.2 38 853-890 220-263 (319)
450 PF11134 Phage_stabilise: Phag 43.3 4.7E+02 0.01 29.5 13.3 62 257-323 89-150 (469)
451 PHA02790 Kelch-like protein; P 42.8 6E+02 0.013 29.5 15.8 27 462-488 445-477 (480)
452 PF11715 Nup160: Nucleoporin N 42.5 92 0.002 37.0 8.9 36 261-297 219-258 (547)
453 PF14727 PHTB1_N: PTHB1 N-term 41.7 3.6E+02 0.0078 30.7 12.7 52 519-571 153-204 (418)
454 PF13449 Phytase-like: Esteras 40.8 4.6E+02 0.0099 28.7 13.4 65 261-327 89-166 (326)
455 PRK10115 protease 2; Provision 40.4 7.8E+02 0.017 30.2 26.1 105 224-336 132-254 (686)
456 KOG4659 Uncharacterized conser 40.2 9.7E+02 0.021 31.2 19.2 65 261-326 597-680 (1899)
457 COG5290 IkappaB kinase complex 39.9 3.1E+02 0.0067 33.2 11.8 31 69-99 114-144 (1243)
458 TIGR03074 PQQ_membr_DH membran 39.3 8.5E+02 0.018 30.3 22.4 78 268-346 260-353 (764)
459 TIGR02276 beta_rpt_yvtn 40-res 39.0 77 0.0017 22.1 4.8 30 317-346 1-31 (42)
460 PHA03098 kelch-like protein; P 37.9 5.4E+02 0.012 30.3 14.5 67 461-528 435-510 (534)
461 TIGR02276 beta_rpt_yvtn 40-res 37.5 1.3E+02 0.0029 20.8 5.8 31 266-297 1-32 (42)
462 KOG1983 Tomosyn and related SN 37.2 5E+02 0.011 33.4 14.3 26 316-341 243-268 (993)
463 TIGR03606 non_repeat_PQQ dehyd 36.7 5.2E+02 0.011 29.8 13.1 62 256-319 29-90 (454)
464 PF03378 CAS_CSE1: CAS/CSE pro 34.7 2E+02 0.0044 32.9 9.6 107 789-926 156-267 (435)
465 PF13418 Kelch_4: Galactose ox 32.6 64 0.0014 23.7 3.5 28 461-488 10-44 (49)
466 PF13432 TPR_16: Tetratricopep 31.7 1.4E+02 0.003 23.2 5.7 51 872-924 5-55 (65)
467 PF13964 Kelch_6: Kelch motif 31.6 60 0.0013 24.0 3.2 31 460-490 8-45 (50)
468 PF01344 Kelch_1: Kelch motif; 31.0 84 0.0018 22.7 3.9 31 459-489 7-44 (47)
469 PHA02713 hypothetical protein; 30.6 9.8E+02 0.021 28.4 17.2 53 461-515 461-522 (557)
470 KOG2247 WD40 repeat-containing 30.4 7.1 0.00015 43.6 -2.8 72 257-339 35-107 (615)
471 KOG1983 Tomosyn and related SN 29.9 5.9E+02 0.013 32.7 13.2 42 447-488 229-271 (993)
472 KOG1900 Nuclear pore complex, 29.6 4.6E+02 0.01 33.8 11.7 54 854-917 1113-1166(1311)
473 KOG3522 Predicted guanine nucl 29.1 3.1E+02 0.0068 33.5 9.8 99 227-338 598-698 (925)
474 PF11090 DUF2833: Protein of u 29.0 47 0.001 28.1 2.4 32 457-488 2-33 (86)
475 PF08314 Sec39: Secretory path 28.5 7.1E+02 0.015 30.7 13.6 157 757-923 431-619 (715)
476 KOG1062 Vesicle coat complex A 28.4 1.9E+02 0.0042 34.9 7.9 155 758-926 178-394 (866)
477 COG5167 VID27 Protein involved 28.3 1.2E+02 0.0025 34.6 5.8 62 267-338 572-633 (776)
478 PF05907 DUF866: Eukaryotic pr 28.0 1.5E+02 0.0033 28.7 6.1 49 455-504 105-155 (161)
479 smart00299 CLH Clathrin heavy 27.3 5E+02 0.011 23.9 12.7 76 830-913 58-138 (140)
480 PF01436 NHL: NHL repeat; Int 27.0 1.7E+02 0.0037 18.7 4.3 22 261-282 6-27 (28)
481 KOG4659 Uncharacterized conser 26.3 1.6E+03 0.034 29.5 20.2 30 71-100 596-626 (1899)
482 PF13512 TPR_18: Tetratricopep 25.8 2.2E+02 0.0048 26.9 6.5 62 866-927 9-75 (142)
483 PHA02790 Kelch-like protein; P 25.2 1.1E+03 0.024 27.3 16.8 64 461-528 405-469 (480)
484 cd08777 Death_RIP1 Death Domai 24.6 3.2E+02 0.0069 23.3 6.7 71 852-924 11-85 (86)
485 PRK10866 outer membrane biogen 24.1 2.4E+02 0.0051 29.5 7.2 73 844-923 16-92 (243)
486 PF13925 Katanin_con80: con80 23.6 5.5E+02 0.012 24.9 9.2 91 763-866 19-110 (164)
487 PF07646 Kelch_2: Kelch motif; 23.2 1.2E+02 0.0027 22.3 3.6 31 458-488 6-45 (49)
488 PF14727 PHTB1_N: PTHB1 N-term 23.0 1.2E+03 0.025 26.7 29.5 105 455-570 244-359 (418)
489 TIGR02608 delta_60_rpt delta-6 22.8 3.2E+02 0.007 21.1 5.7 45 224-280 6-50 (55)
490 TIGR03075 PQQ_enz_alc_DH PQQ-d 22.7 1.3E+03 0.028 27.2 20.4 69 269-346 121-198 (527)
491 PF07250 Glyoxal_oxid_N: Glyox 22.3 6.3E+02 0.014 26.4 9.7 83 261-347 122-207 (243)
492 TIGR01063 gyrA DNA gyrase, A s 21.6 1.6E+03 0.036 28.0 22.2 76 211-287 641-719 (800)
493 PF06711 DUF1198: Protein of u 21.0 1.6E+02 0.0034 27.5 4.3 59 852-910 37-101 (148)
494 PF04910 Tcf25: Transcriptiona 20.9 7.3E+02 0.016 27.6 10.6 67 850-923 96-162 (360)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-83 Score=722.06 Aligned_cols=663 Identities=35% Similarity=0.526 Sum_probs=506.1
Q ss_pred eCCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (927)
.||+......+....+.-.....+. .--++++|++++..++++|+|..-|.+.+|+..........-.... .+++
T Consensus 121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~----~~~t 195 (1023)
T KOG2006|consen 121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDD----DTLT 195 (1023)
T ss_pred ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccC----cccc
Confidence 6777655544443322211111111 2336888999999999999999999999999875222222111111 1255
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEE
Q 002405 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA 387 (927)
Q Consensus 308 ~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~ 387 (927)
-++..+.|+|+++.+|.++..|...+|+..++..+.+..........+..|+|...+......+......|...+..++.
T Consensus 196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~ 275 (1023)
T KOG2006|consen 196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP 275 (1023)
T ss_pred ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence 58899999999999999999999999999998777666554345556666776654444444455566677777766665
Q ss_pred EEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCC---CCcceEEEeecCcccccCCCceEEEEEccCC
Q 002405 388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (927)
Q Consensus 388 ~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~I~~va~spdG 464 (927)
........+..+.. +.... ..+++.......++.+..+....+ .+...|.+.++|..|...+|||+.++.++||
T Consensus 276 ~~~~~~~~~~~~~s-~sc~~--~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg 352 (1023)
T KOG2006|consen 276 HGEQILTISDFKVS-KSCLV--ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG 352 (1023)
T ss_pred ccccccchhheeec-ccccc--cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence 43322222211111 11000 112222222233444443333333 4556799999999999999999999999999
Q ss_pred CEEEEEeCCceEEEEccCCcEEeeCCccceeeeEEEE-EEeeCCEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEEec
Q 002405 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (927)
Q Consensus 465 ~~la~ag~dg~i~wd~~s~~w~~f~~~~~e~~~~v~~-~~W~~~~li~~~~~~~~~~~~l~l~~~~-~l~~~~~~~~~~~ 542 (927)
+++|+||.-|.++|+..+++||.|+++.+|+.+.|+| +.|++++++.||+...+..+++++|+++ ++|+. ..++...
T Consensus 353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~-~a~k~~~ 431 (1023)
T KOG2006|consen 353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNN-LAHKSAA 431 (1023)
T ss_pred cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchh-hccchhh
Confidence 9999999999999999999999999999999999884 9999999999999999999999999998 66664 4444444
Q ss_pred CCccEEEEccCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeccccCCCceEEEccCCCcccccccCCCC
Q 002405 543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS 622 (927)
Q Consensus 543 ~~~~~~~~~~~~~l~v~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~ 622 (927)
...+..+.+.++.++|++.|+.+.+|++..+. ...+.+..++++++..++.||++|++++.+++++..... +
T Consensus 432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~--~ 503 (1023)
T KOG2006|consen 432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN--D 503 (1023)
T ss_pred hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc--c
Confidence 44445567788899999999999999886433 356788889999999999999999999999876321111 1
Q ss_pred CcccccccCCceEEEEeeCCEEEEEecCC-------CceeeeccceeEEEEcCCCCccccCccceeeEEEECCCC-----
Q 002405 623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG----- 690 (927)
Q Consensus 623 ~~~~~~~~~~~~~lil~~~g~l~~l~~~~-------~~~~~l~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~g----- 690 (927)
+.+.+. ......+|.+.++.... ..+..+++.||++|++. +... ..+.+..|..+|..|
T Consensus 504 ~l~~~~------~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~s-s~~~--~~~~d~~Wl~~g~~~~~~~~ 574 (1023)
T KOG2006|consen 504 NLQFYK------SITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNS-SFED--QQVLDLHWLGDGANGCHMKN 574 (1023)
T ss_pred chhHhh------hhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCc-HHhh--hhhhhceeeccCCCcccccc
Confidence 111111 11122344444443321 24578999999999883 2222 234466788888888
Q ss_pred cEEe---------ccC-----CCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeecccC-----cCccce
Q 002405 691 MQVW---------YPS-----PGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSAC-----TEFPCF 751 (927)
Q Consensus 691 ~~vw---------~~~-----~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~~~g~~~~~~~~~~-----~~~~~~ 751 (927)
|+.| ++. .+.+.+..++|..+++|++|+.+.|||.++++++++.|++++.....+ ..+++.
T Consensus 575 ~~g~~~~l~~~~~~~~g~~~~~~~~~~~~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~ 654 (1023)
T KOG2006|consen 575 MDGCPNHLCLALWLSEGNVWDLVMDAYRVPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFD 654 (1023)
T ss_pred ccCCccccccceeecccchhhcccccccCchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchH
Confidence 5554 333 344566788899999999999999999999999999999998655432 234444
Q ss_pred ecCCcceecHHHHHH--HHHHccCHHHHHHHHHHcCCCCCchHHHHHHHHHhhhcccccccccccccCCcccccchhhHH
Q 002405 752 EPTPQAQTILHCLLR--HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLE 829 (927)
Q Consensus 752 ~~~~~~~~~L~~~l~--~ll~~~~~~~a~~~~~~~~~l~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~ 829 (927)
-...+|++|+|.+++ ++|+||.++.|+.+|+.|..+|||+|+||+|||+|||+|+++++| ||+ ++||
T Consensus 655 v~~~~h~~~l~~i~~l~q~lkrnl~~~aLllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~d-----~~l~ 723 (1023)
T KOG2006|consen 655 VQERLHQIYLHIILHLYQLLKRNLGEDALLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IPD-----KLLP 723 (1023)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhhccHHHHHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------ccc-----hhHH
Confidence 456899999999999 999999999999999999999999999999999999999998765 787 7999
Q ss_pred HHHHHHHhcchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHH
Q 002405 830 KTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQA 909 (927)
Q Consensus 830 ~v~~~l~~~~~~l~ivv~c~RK~e~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~ 909 (927)
+++.||++||+|+++|||||||||.++|++||+++|.|+||||+||++.+++|||+||||+||+|++++++++|++|+++
T Consensus 724 ~i~d~I~eFp~fl~~vv~caRKTe~~lW~~lF~~~G~PkdLfe~Clqt~~~~tAA~~Liilqnle~savs~~~a~~L~q~ 803 (1023)
T KOG2006|consen 724 KIIDFIREFPEFLKTVVNCARKTEAALWPDLFSAVGIPKDLFEECLQTEDLDTAASYLIILQNLEGSAVSVQHALRLLQL 803 (1023)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHhhccchhhhceeeeeeeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccHhhHHHhHhhcC
Q 002405 910 TLDECLYELAGELVSVLT 927 (927)
Q Consensus 910 al~~~~~~l~~el~rfl~ 927 (927)
||++++||+|+||+||||
T Consensus 804 aL~~~kwdl~~Elirfl~ 821 (1023)
T KOG2006|consen 804 ALEEKKWDLAKELIRFLR 821 (1023)
T ss_pred HHHhhcchhHHHHHHHHH
Confidence 999999999999999986
No 2
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=100.00 E-value=5.6e-65 Score=522.24 Aligned_cols=236 Identities=39% Similarity=0.626 Sum_probs=212.8
Q ss_pred eeEEEECC-CCcEEeccCCCCC--CCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeecccCcCccceecCCcc
Q 002405 681 VSWLDYGY-RGMQVWYPSPGVD--PYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQA 757 (927)
Q Consensus 681 ~~~~~~~~-~g~~vw~~~~~~~--~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 757 (927)
+++|+|+| +||+||+|+.+.. +...+.+.+ ..+.++.|+|||+|++++|+++|+++++..+++.+++++++.+++
T Consensus 4 ~~lW~~~g~~~~~vW~~~~~~~~~~~~~~~~~~--~~i~l~~d~yPlsil~~~gii~Gv~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PF07064_consen 4 DSLWLFCGAQGMKVWLPVFPVSPASSDSHSFLS--KRIMLPSDFYPLSILSEKGIILGVEQDTSQRRSSSFPFFKFEIKT 81 (258)
T ss_pred cceehhcCcccceeecccccccccccccccccc--cCccCCccccceEEEcCCcEEEEEEEEeeccCCcCccceEeecCc
Confidence 45565555 9999999998762 223333333 445555999999999999999999999888888899999999999
Q ss_pred eecHHHHHHHHHHccCHHHHHHHHHHcCCCCCchHHHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHh
Q 002405 758 QTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN 837 (927)
Q Consensus 758 ~~~L~~~l~~ll~~~~~~~a~~~~~~~~~l~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~ 837 (927)
|+|||+||+++|++|++.+|++|+++|++|+||+||||+|||+|||+|++.+.+. ++ ++++|++|++||++
T Consensus 82 ~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~----~~-----~~~~L~~v~~ll~~ 152 (258)
T PF07064_consen 82 QLFLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDS----PI-----PDALLPRVISLLQE 152 (258)
T ss_pred eechHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccc----cc-----hHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999765321 12 33899999999999
Q ss_pred cchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcch-----hHHHHHHHHHHHHh
Q 002405 838 FPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAV-----SQYSALRLLQATLD 912 (927)
Q Consensus 838 ~~~~l~ivv~c~RK~e~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~-----~~~~~~~ll~~al~ 912 (927)
||+|++||||||||||+++|++||+++|+|+|||++||++|+++|||+||||+||+|+.+. ++++|++||++|++
T Consensus 153 f~~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 153 FPEYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred CcchHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred hccHhhHHHhHhhcC
Q 002405 913 ECLYELAGELVSVLT 927 (927)
Q Consensus 913 ~~~~~l~~el~rfl~ 927 (927)
+++|+||+||+|||+
T Consensus 233 ~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 233 SGDWDLCFELVRFLK 247 (258)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999999985
No 3
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-41 Score=357.25 Aligned_cols=631 Identities=16% Similarity=0.170 Sum_probs=430.7
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~ 143 (927)
+...+.+|.|+|--..+.++-.+|.+.||+-++... +.+ +...+.+|++ |..-.+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------Vks----------feV~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------VKS----------FEVSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee-------------eee----------eeecccchhhheeeeccc
Confidence 345678999999999999999999999999864321 010 1111223322 333457
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+++|++|..|+++.++..... .....|..+|++++
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV------------------------------------~~FeAH~DyIR~ia-------- 104 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKV------------------------------------KTFEAHSDYIRSIA-------- 104 (794)
T ss_pred eEEEecCCceEEEEecccceee------------------------------------EEeeccccceeeee--------
Confidence 8999999999999887642211 11234555666654
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccc----ceecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~----~~~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
+.|.-.+++++++|.++++|+.... +...||+..| +++||| |.+.+|+||-|+||+||.+.. ..+..++.+
T Consensus 105 --vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 105 --VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred --ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 5788889999999999999987643 2338999999 999999 578999999999999999987 778889999
Q ss_pred ecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--
Q 002405 298 YDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
|...|+|+.+-| |--+|++|++|.+++|||..+..|+++|+|| ...|+.+.|+|.- ..++||+
T Consensus 182 --------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsED 248 (794)
T KOG0276|consen 182 --------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSED 248 (794)
T ss_pred --------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCC
Confidence 999999999987 4469999999999999999999999999999 8899999999987 7889998
Q ss_pred -eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecC--------CeEEEeecCCCCc-----
Q 002405 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE--------DRLLVVQSEDTDE----- 436 (927)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~--------~~~~~~~~~~~~~----- 436 (927)
++++|...++++..++.-.-++++++.. .+.++.|...+.+.+ .+.... .+++.....+...
T Consensus 249 GTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 249 GTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred ccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeecee
Confidence 9999999999887766555566766664 223344433333321 111110 0111111111000
Q ss_pred -------ceEEEeecCcccccCCCc-eEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeCCccceeeeEEEEEEeeCCE
Q 002405 437 -------LKILHLNLPVSYISQNWP-VQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI 508 (927)
Q Consensus 437 -------~~w~~~~~~~~~~~~~~~-I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~ 508 (927)
..-+.+.+..+-++..+- -..++-||+|++++++|....++|....-|-|.||. ...+.|..+-
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~--------~~eFvw~~ds 399 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGS--------GLEFVWAADS 399 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhccccc--------ceeEEEcCCC
Confidence 000111111122222221 245788999999999987777799877766666654 3456786552
Q ss_pred EEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEE
Q 002405 509 IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLST 588 (927)
Q Consensus 509 li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~ 588 (927)
-..+. + .+...+.++ +. +-....+.........+++.|+....++.+.+|+++ .+. .
T Consensus 400 ne~av-R--es~~~vki~-kn------fke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~-~~~------------l 456 (794)
T KOG0276|consen 400 NEFAV-R--ESNGNVKIF-KN------FKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWE-SGE------------L 456 (794)
T ss_pred CeEEE-E--ecCCceEEE-ec------ceeccccccccceeeecCCceEEEEeCCeEEEEEcc-cce------------E
Confidence 22221 2 233456666 41 111222233334566788899998999999999996 222 2
Q ss_pred EEEEeeccccCCCceEEEccCCCcccccccCCCCCcccccccCCceEEEEeeCCEEEEEecCCC----------ceeeec
Q 002405 589 VRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDG----------RERELT 658 (927)
Q Consensus 589 ~~~i~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~~----------~~~~l~ 658 (927)
+++|.+. ...|.|. ++++-+++.....++||.++-+.+.--.+.+ .-.+|.
T Consensus 457 VrrI~v~--------~k~v~w~-----------d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLg 517 (794)
T KOG0276|consen 457 VRRIEVT--------SKHVYWS-----------DNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLG 517 (794)
T ss_pred EEEEeec--------cceeEEe-----------cCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 6677765 2223333 2223333333334556655555443222222 114677
Q ss_pred cceeEEEEcCCCCccccCccceeeEEEECCCCcEEeccCCCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEee
Q 002405 659 DSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQ 738 (927)
Q Consensus 659 ~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~~~g~~~ 738 (927)
+.-|+ +..+.|..++ ++|+....|+.|.+.+. ...+..++..+|-|+..+.+..++-.+.
T Consensus 518 E~sE~--v~tg~WvgD~--------fiytts~nrlnY~vgGe----------~~~v~h~~~~mylLgy~~~~~rvYL~Dk 577 (794)
T KOG0276|consen 518 EVSES--VKTGKWVGDC--------FIYTTSNNRLNYLVGGE----------TYTVAHLDRIMYLLGYVANDNRVYLHDK 577 (794)
T ss_pred hhhhh--eeeceeeeeE--------EEEeecccceeEEcCCc----------eEEEEEeccchhheeeeecCCEEEEeec
Confidence 77787 4445566655 89999999999887666 4456678889999999999999999998
Q ss_pred eeeccc-CcCccceecCCcceecHHHHHHHHHHccCHHHHHHHHHHcCCCCCchHHHHHHHHHhhhcccccccccccccC
Q 002405 739 RMSFSA-CTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQIS 817 (927)
Q Consensus 739 ~~~~~~-~~~~~~~~~~~~~~~~L~~~l~~ll~~~~~~~a~~~~~~~~~l~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~ 817 (927)
++.+-+ ++.+.++++ +.++.|++.+.|-++. | .
T Consensus 578 e~nVi~y~l~l~vley------------qt~vmrrd~~~a~~vL-----------------------------p-----~ 611 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEY------------QTLVLRRDLEVADGVL-----------------------------P-----T 611 (794)
T ss_pred ccceEeEeeehHHHHH------------HHHhhhcccccccccc-----------------------------c-----c
Confidence 754321 233334444 3477777777766432 2 3
Q ss_pred CcccccchhhHHHHHHHHHhcchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcc
Q 002405 818 IPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPA 897 (927)
Q Consensus 818 ~~~~~~~~~~l~~v~~~l~~~~~~l~ivv~c~RK~e~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~ 897 (927)
||. +...++..|++.. +|.|-..+.+-..+.+ ||.+|+.|+|++|..++. ++
T Consensus 612 I~k-----~~rt~va~Fle~~-g~~e~AL~~s~D~d~r---------------Felal~lgrl~iA~~la~-------e~ 663 (794)
T KOG0276|consen 612 IPK-----EIRTKVAHFLESQ-GMKEQALELSTDPDQR---------------FELALKLGRLDIAFDLAV-------EA 663 (794)
T ss_pred Cch-----hhhhhHHhHhhhc-cchHhhhhcCCChhhh---------------hhhhhhcCcHHHHHHHHH-------hh
Confidence 665 7889999999876 7777776666666666 999999999999999887 67
Q ss_pred hhHHHHHHHHHHHHhhccHhhHHHhHh
Q 002405 898 VSQYSALRLLQATLDECLYELAGELVS 924 (927)
Q Consensus 898 ~~~~~~~~ll~~al~~~~~~l~~el~r 924 (927)
.+.++|.+|.++|+.+++..+|.|-++
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHH
Confidence 789999999999999999999999754
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-38 Score=316.40 Aligned_cols=344 Identities=15% Similarity=0.133 Sum_probs=281.7
Q ss_pred ccCeEEEeecCCceeEEEEEeeChHhhhhc-ccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccce
Q 002405 38 SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (927)
Q Consensus 38 ~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (927)
+.+.+.|-...|.-..+....|+..++..| +.+.+++|||||+.||+|+.|.++|+||+.+.......
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~----------- 153 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC----------- 153 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-----------
Confidence 445555554433333344556777777766 56789999999999999999999999999865433222
Q ss_pred eeeEEeecccccccccceEE--EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCcccc
Q 002405 117 KISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (927)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 194 (927)
+++..-|. +++||++.|+.|+.||.|.+ |+.+.+...-
T Consensus 154 ------------KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g-------------------------- 193 (480)
T KOG0271|consen 154 ------------KGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG-------------------------- 193 (480)
T ss_pred ------------cCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCCccc--------------------------
Confidence 23333444 45788999999999999987 6665544331
Q ss_pred CCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcE
Q 002405 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQI 270 (927)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~ 270 (927)
..+.+|+..|++++|.|- -..|..+.+++++.|+++++||...+.+. .||+.+| |+.|--+| +
T Consensus 194 -------~~l~gH~K~It~Lawep~-----hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 194 -------RALRGHKKWITALAWEPL-----HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred -------ccccCcccceeEEeeccc-----ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence 235678889999999873 34688999999999999999998776543 8999999 99997665 8
Q ss_pred EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEEC-----------CCCC-------------------
Q 002405 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNS------------------- 320 (927)
Q Consensus 271 la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s-----------pdg~------------------- 320 (927)
|++|+.|++|++|+..+ |.+.+.+++ |...|+.++.| |-|+
T Consensus 261 iySgS~DrtIkvw~a~d-G~~~r~lkG--------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALD-GKLCRELKG--------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEecCCCceEEEEEccc-hhHHHhhcc--------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 99999999999999988 889999999 99999999888 2233
Q ss_pred ------EEEEEEcCCcEEEEEccC-CeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEc
Q 002405 321 ------AFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 321 ------~Lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (927)
.|++|++|.++.+|+-.. .+++....+| ..-|+.+.||||+ .+++|++ ++++|+..+++.+.++.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhh
Confidence 499999999999999854 4477777788 8899999999999 9999998 99999999999999999
Q ss_pred CCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEE
Q 002405 391 GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 467 (927)
Q Consensus 391 ~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~l 467 (927)
||-..|+++.+ .+.++|+|.|.|+++|++.+.+- ...+-||.+.|.++.|||||+.+
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCcee
Confidence 99999988888 56899999999999999986543 45667899999999999999999
Q ss_pred EEEeCCceE-EEE
Q 002405 468 AVAGLHGLI-LYD 479 (927)
Q Consensus 468 a~ag~dg~i-~wd 479 (927)
|+||.|..+ +|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 999999999 884
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=323.12 Aligned_cols=408 Identities=18% Similarity=0.232 Sum_probs=288.5
Q ss_pred CCceEEEEEecCeEEEEEccCeEEEeecCCcee-EEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
.....|.|||||++||++..+-++||...+... ....+.+...-+.+...++++.||.|++.|++++.|-..++|.++.
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 467779999999999999999999999842211 2334444444455678899999999999999999999999999975
Q ss_pred cCceee--cCCCCCCCccceeeeEEeecccccccccceEEEe-eccCCeEEEEecCCcEEEEecCCccccce--eeccc-
Q 002405 99 TEKSIQ--IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAF--ELVHS- 172 (927)
Q Consensus 99 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~l~v~~~dg~i~~~~w~~~~~~~~--~~~~~- 172 (927)
.++..+ ..+|. +.-|.|+ ..+...+++-+.||.+..|..+....... ..+..
T Consensus 177 ~k~~~~~~l~gHk----------------------d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg 234 (893)
T KOG0291|consen 177 NKNLFTYALNGHK----------------------DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEG 234 (893)
T ss_pred ccccceEeccCCC----------------------cceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccc
Confidence 443211 12222 1223343 34456788889999998876551100000 00000
Q ss_pred --------C-------------------CCCcccccccccCCCC-CccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 173 --------S-------------------NDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 173 --------~-------------------~~~~~i~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
+ ..+.++....|..... +++...++... ..-.+.-.-|.++..+......+
T Consensus 235 ~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~-LyelP~f~lih~LSis~~~I~t~ 313 (893)
T KOG0291|consen 235 SDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG-LYELPDFNLIHSLSISDQKILTV 313 (893)
T ss_pred cccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE-EEecCCceEEEEeecccceeeEE
Confidence 0 0000111111111111 11111111110 00011222233333333333445
Q ss_pred EEEeCCcEEEEeeec-Cccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 225 VLYSNGQLMSCSVSK-KGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d-~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+++..|..++.++.. +.+-+|+.....- .+||...+ |+++||||+++|+|+.||.|||||... +-|+.++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFte-- 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTE-- 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEecc--
Confidence 566667777776654 4555676554322 27899999 999999999999999999999999987 889999999
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc----ee
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SM 375 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~ 375 (927)
|+..|+.+.|+.+|+.+.+++-||+|+.||+...+..+++........++++..|.| +.+..|. .+
T Consensus 391 ------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d~F~I 460 (893)
T KOG0291|consen 391 ------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQDSFEI 460 (893)
T ss_pred ------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccceEEE
Confidence 999999999999999999999999999999999999999987656678889999988 7777666 89
Q ss_pred EEEcCCCceEEEEEcCCcceEEE--Eec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC
Q 002405 376 MQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (927)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (927)
.+|+..+|+++-++.||.++|.. |++ +..++|+|+|.|+++|++...... .....+.
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~--------------------vEtl~i~ 520 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT--------------------VETLEIR 520 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce--------------------eeeEeec
Confidence 99999999999999999999965 555 889999999999999998765431 1122345
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 453 ~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
..+..++|+|||+.||+++-||.+ +||+..+
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 568999999999999999999999 9998754
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-35 Score=297.65 Aligned_cols=331 Identities=15% Similarity=0.194 Sum_probs=243.0
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~ 279 (927)
..+|..+|.++. |+|+|+.+++|+.|.++++||..+.... .+|...| |++|+|||+.||+|+.||+
T Consensus 111 ~~GH~e~Vl~~~----------fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 111 IAGHGEAVLSVQ----------FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred cCCCCCcEEEEE----------ecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCe
Confidence 457788887765 4899999999999999999998764332 8999999 9999999999999999999
Q ss_pred EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-----CCCEEEEEEcCCcEEEEEccCCeeEEEecccccccee
Q 002405 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 354 (927)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-----dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~ 354 (927)
|++||-.+++...+.+.+ |+..|++++|-| ..++||+++.||.++|||+..+.++..+.+| +.+|+
T Consensus 181 I~lwdpktg~~~g~~l~g--------H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VT 251 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRG--------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVT 251 (480)
T ss_pred EEEecCCCCCcccccccC--------cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceE
Confidence 999999885556677888 999999999976 6789999999999999999999999999999 89999
Q ss_pred cceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEecc-c-eeeecccCCCeeeeeee---------
Q 002405 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFG-K-CCLNRGVSGMTYARQVI--------- 420 (927)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~-~-~~~s~s~d~~~~~w~~~--------- 420 (927)
++.+--+ ..+.||+ ++++|+...+.+...+++|...|..++.. . .+-+|..|.+-+...-.
T Consensus 252 CvrwGG~-----gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 252 CVRWGGE-----GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred EEEEcCC-----ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 9999765 4778887 99999999999999999998888444431 1 12233333322110000
Q ss_pred ------ecCCeEEEeecCCCCcceEEEee---cCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeC
Q 002405 421 ------YGEDRLLVVQSEDTDELKILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFG 489 (927)
Q Consensus 421 ------~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~ 489 (927)
....+-+++.+.|...+.|+..+ ......+|+..|.++.|||||+|+|+|+.|..+ +|+..+|+.- .|.
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence 00001122222222333443222 234677999999999999999999999999999 9999999743 232
Q ss_pred CccceeeeEEEEEEeeCC--EEEEEEeecCCCeEEEEEeeCC--CCCccceeEEEecCCccEEEEccCCEEEEEEcCCeE
Q 002405 490 DITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDV 565 (927)
Q Consensus 490 ~~~~e~~~~v~~~~W~~~--~li~~~~~~~~~~~~l~l~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i 565 (927)
.. --.|-.++|..+ .+++| +.+..|++|+.. ++..+...|..++ -.+-++|+|..++.+..|..+
T Consensus 407 GH----v~~VYqvawsaDsRLlVS~-----SkDsTLKvw~V~tkKl~~DLpGh~DEV--f~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 407 GH----VAAVYQVAWSADSRLLVSG-----SKDSTLKVWDVRTKKLKQDLPGHADEV--FAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred hc----cceeEEEEeccCccEEEEc-----CCCceEEEEEeeeeeecccCCCCCceE--EEEEecCCCceeecCCCceEE
Confidence 11 012557899876 45545 456789999773 2332222221111 124568899999888888888
Q ss_pred EEEE
Q 002405 566 HIFH 569 (927)
Q Consensus 566 ~l~~ 569 (927)
++|+
T Consensus 476 ~lw~ 479 (480)
T KOG0271|consen 476 RLWR 479 (480)
T ss_pred Eeec
Confidence 8885
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-34 Score=291.89 Aligned_cols=278 Identities=14% Similarity=0.127 Sum_probs=228.2
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc--CC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~ 143 (927)
..+++..+.||+||+.||+|+-+|.+++|+.........+.+|... +.+ ..+.|. +.
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~---v~~------------------~~fhP~~~~~ 232 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR---VGA------------------AVFHPVDSDL 232 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc---eee------------------EEEccCCCcc
Confidence 4578889999999999999999999999998755433444444321 111 123333 45
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+++++.||++.+|..+.+... ..+.+|...|..+.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l------------------------------------~~l~gH~~RVs~Va-------- 268 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPL------------------------------------QDLEGHLARVSRVA-------- 268 (459)
T ss_pred ceeeeccCCceeeeccCCCcch------------------------------------hhhhcchhhheeee--------
Confidence 7899999999999776653211 12345666666654
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
|.|+|+++.+++-|.+-++||..+.... .||...| +++|+|||.++++|+-|..-||||+.+ ++++..+.+
T Consensus 269 --fHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-- 343 (459)
T KOG0272|consen 269 --FHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-- 343 (459)
T ss_pred --ecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc--
Confidence 5899999999999999999999887654 7999999 999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEc
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~ 379 (927)
|.++|.+|+|||+|+.||||+.|++++|||+....++.++.+| .+-|+.+.|+|..
T Consensus 344 ------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~----------------- 399 (459)
T KOG0272|consen 344 ------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE----------------- 399 (459)
T ss_pred ------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC-----------------
Confidence 9999999999999999999999999999999998888888888 6777777777632
Q ss_pred CCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEE
Q 002405 380 EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (927)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va 459 (927)
|..++|++.|+++++|.-..... ...+.||.+.|.++.
T Consensus 400 ----------------------g~fL~TasyD~t~kiWs~~~~~~--------------------~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 400 ----------------------GYFLVTASYDNTVKIWSTRTWSP--------------------LKSLAGHEGKVISLD 437 (459)
T ss_pred ----------------------CeEEEEcccCcceeeecCCCccc--------------------chhhcCCccceEEEE
Confidence 45668889999999998543332 567889999999999
Q ss_pred EccCCCEEEEEeCCceE-EEE
Q 002405 460 ASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 460 ~spdG~~la~ag~dg~i-~wd 479 (927)
+||||++++++|.|.++ +|.
T Consensus 438 is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eccCCceEEEeccCceeeecc
Confidence 99999999999999999 985
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=7e-32 Score=277.60 Aligned_cols=265 Identities=15% Similarity=0.181 Sum_probs=225.0
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCC--CcEEEEEecCCeEEEEeccCCCcceEEE
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~--~~~la~g~~Dg~V~vwd~~~~~~~~~~l 295 (927)
..+.++.||+.++|++-+|.+++|+...... +.||...+ ++.|+|. +..+|+|+.||+|++|++++ ..++..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l 257 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL 257 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh
Confidence 3466799999999999999999998776533 38999999 9999997 66899999999999999987 6788888
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
.+ |...|..++|+|+|++|+|++.|.++++||+.++......+|| ..+|.+++|.|+| ..++||+
T Consensus 258 ~g--------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DG----SL~~tGGlD 324 (459)
T KOG0272|consen 258 EG--------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDG----SLAATGGLD 324 (459)
T ss_pred hc--------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCC----ceeeccCcc
Confidence 88 9999999999999999999999999999999999888888888 8899999999999 8888887
Q ss_pred -eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc
Q 002405 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (927)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (927)
..++||..+++.++.+.+|...|+.++| |-.++|||.|+++++||+..... ....-
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--------------------ly~ip 384 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--------------------LYTIP 384 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--------------------ceecc
Confidence 7899999999999999999999965555 88999999999999999986554 34455
Q ss_pred cCCCceEEEEEcc-CCCEEEEEeCCceE-EEEccCCcEEeeCC-ccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEe
Q 002405 450 SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFY 526 (927)
Q Consensus 450 ~~~~~I~~va~sp-dG~~la~ag~dg~i-~wd~~s~~w~~f~~-~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~ 526 (927)
+|..-|+.|.|+| .|.+|++||.|+++ +|+..+ |...+. ..||..+....+.-.++.++++++ +..+++|
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-----DRT~KLW 457 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSF-----DRTIKLW 457 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEecc-----Cceeeec
Confidence 7999999999999 79999999999999 998765 443332 235555444456666777887743 3567777
Q ss_pred e
Q 002405 527 P 527 (927)
Q Consensus 527 ~ 527 (927)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 4
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.6e-28 Score=258.97 Aligned_cols=480 Identities=14% Similarity=0.155 Sum_probs=313.5
Q ss_pred CCceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC--cEEEEEEE
Q 002405 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS--LYLHIFKV 96 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d--g~l~i~~l 96 (927)
...-+..|||.|-++|++. .++|+||+..+....|...-+. -.|++.+++|++||++|++.... ++.++|-.
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v-----~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV-----LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeee-----cccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 3466688999999999984 7899999996432222211111 24999999999999999886533 23344433
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccC-CeEEEEecCCcEEEEecCCccccceeecccC
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~-~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~ 173 (927)
+++...-.+.+| .-.|. .|.+.+ -+++++++|+.+..+ ++. ++.+
T Consensus 135 DSG~SvGei~Gh-----------------------Sr~ins~~~KpsRPfRi~T~sdDn~v~ff--eGP---PFKF---- 182 (603)
T KOG0318|consen 135 DSGNSVGEITGH-----------------------SRRINSVDFKPSRPFRIATGSDDNTVAFF--EGP---PFKF---- 182 (603)
T ss_pred cCCCccceeecc-----------------------ceeEeeeeccCCCceEEEeccCCCeEEEe--eCC---Ceee----
Confidence 333321111111 11222 223333 568888999998775 331 2210
Q ss_pred CCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee
Q 002405 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE 253 (927)
Q Consensus 174 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~ 253 (927)
. ....+|...|.++.| +|||..+++.+.|+.+.++|..++++.
T Consensus 183 --------------------------k-~s~r~HskFV~~VRy----------sPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 183 --------------------------K-SSFREHSKFVNCVRY----------SPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred --------------------------e-ecccccccceeeEEE----------CCCCCeEEEecCCccEEEEcCCCccEE
Confidence 0 123456667888777 667777777777777777777776654
Q ss_pred ------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 254 ------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 254 ------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.+|.+.+ .++|+||++.+++++.|.++||||+.+ .++++++..... -...-..+-|. +..|++-+
T Consensus 226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~-----v~dqqvG~lWq--kd~lItVS 297 (603)
T KOG0318|consen 226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGST-----VEDQQVGCLWQ--KDHLITVS 297 (603)
T ss_pred EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCc-----hhceEEEEEEe--CCeEEEEE
Confidence 4799999 999999999999999999999999998 788887765210 11223345576 56888999
Q ss_pred cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEE-EcCCcceEEEEec-
Q 002405 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF- 401 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~~~- 401 (927)
.+|++...+...+....++.|| ...|+++..+|++ ..+.||+ .+.-|+...+..-.. .++|...|..+..
T Consensus 298 l~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~----~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDG----KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred cCcEEEEecccCCChhheeccc-ccceeEEEEcCCC----CEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 9999999999988888899998 8899999999999 8888887 899999987755443 3679999988877
Q ss_pred -cceeeecccCCCeeeeeeeecC---C--------eEEEeecCCCCcce---EEEeecCc-----ccccCCCceEEEEEc
Q 002405 402 -GKCCLNRGVSGMTYARQVIYGE---D--------RLLVVQSEDTDELK---ILHLNLPV-----SYISQNWPVQHVAAS 461 (927)
Q Consensus 402 -~~~~~s~s~d~~~~~w~~~~~~---~--------~~~~~~~~~~~~~~---w~~~~~~~-----~~~~~~~~I~~va~s 461 (927)
...+.+.++|.++++-++..+. . ...+....+..... -..+.+.+ ....-.....++|++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 4688999999999887653221 1 11111111110000 00111111 000112345789999
Q ss_pred cCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC-CCC-ccce
Q 002405 462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLD-QSSL 536 (927)
Q Consensus 462 pdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~-~l~-~~~~ 536 (927)
|+|..+|+||+||.+ +|.+..+..+.+.. ..+..-.++.+++. +.++++| +...++.+|+.. +.. ....
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAG-----DASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEe-----ccCCcEEEEEcccCceeccee
Confidence 999999999999999 99998765332211 11222235556665 4566666 455788999885 221 1111
Q ss_pred e-EEEecCCccEEEEccCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeccccCCCceEEEccCCC
Q 002405 537 L-CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQV 611 (927)
Q Consensus 537 ~-~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~~p~~v~~i~~~~ 611 (927)
. |+-.+ .-+..+|...++++++-|-.|.+|.++-. ++ .|.+.+ .||.+|+.+-|..
T Consensus 527 ~FHtakI--~~~aWsP~n~~vATGSlDt~Viiysv~kP-----~~----------~i~ikn--AH~~gVn~v~wld 583 (603)
T KOG0318|consen 527 AFHTAKI--NCVAWSPNNKLVATGSLDTNVIIYSVKKP-----AK----------HIIIKN--AHLGGVNSVAWLD 583 (603)
T ss_pred eeeeeeE--EEEEeCCCceEEEeccccceEEEEEccCh-----hh----------heEecc--ccccCceeEEEec
Confidence 1 22211 23567898889999999999999987521 11 123332 4787888887774
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.9e-30 Score=282.37 Aligned_cols=422 Identities=13% Similarity=0.164 Sum_probs=281.1
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhc-ccccEEEEcCCccE--EEEEecCcEEEEEEE
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKL--IAVVTSSLYLHIFKV 96 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wspDg~~--Lav~t~dg~l~i~~l 96 (927)
|.-.++|+|-|.++|+++ |+.+++||.. ..-.+..+ +.+ |.+.++.|.|+-.+ |++|..|+.+++||+
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~-~~~~th~f-------kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIK-NGYCTHSF-------KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEee-CCEEEEEe-------cCCCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 455579999999999985 9999999995 43333332 343 55667999998865 899999999999999
Q ss_pred EecCc-eeecCCCCC------------------CC--ccceeeeEEeecc-cc-cccccceEEEeecc-----CCeEEEE
Q 002405 97 QITEK-SIQIGGKQP------------------SG--LFFIKISLVLNEQ-LP-FAEKGLSVSNIVSD-----NKHMLLG 148 (927)
Q Consensus 97 ~~~~~-~~~~~~~~~------------------~~--~~~~~~~~~~~~~-~~-~~~~~~~v~~i~~~-----~~~l~v~ 148 (927)
..... ......|.. .+ ..+|+..-..... .+ ..+.++. .+... +..++++
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v--v~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV--VRLREELGGKGEYIITA 256 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE--EEechhcCCcceEEEEe
Confidence 85443 000011100 00 1112210000000 00 0011111 11122 3578888
Q ss_pred ecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCcccc-C--------CCceecccccCCCccEEEEEE---
Q 002405 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD-T--------SGAFVSDHKFPISSAIIWLEL--- 216 (927)
Q Consensus 149 ~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~-~--------~~~~~~~~~~~~~~~i~~i~~--- 216 (927)
+.+|.++.|+ .+..........+-...-....+.....++.... + ........+.+....|.+|.|
T Consensus 257 G~~g~~~~~d--~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 257 GGSGVVQYWD--SESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred cCCceEEEEe--cccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 8899888754 3332111000000000011111112222110000 0 000000011111222222222
Q ss_pred -----------------------------ccCcceEEEEEeCCcEEEEeeecCccceeeecccce-------ecCCCCeE
Q 002405 217 -----------------------------CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-------ELGSGDAV 260 (927)
Q Consensus 217 -----------------------------~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~-------~~~h~~~v 260 (927)
+.....++....+|-.+++++.|.++++|...+... ..||+..+
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 111223344557888999999999999997643321 16899999
Q ss_pred -EEEEcCC-CcEEEEEecCCeEEEEeccCCCcce---EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 261 -CASIAPE-QQILAVGTRRGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 261 -~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
+++++.. ...+|++|.|+++++|++.. .+.. ..+.. ......|...|+|++.+|+.+.+|+||.|++.+||+
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~--~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTC--RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCC-cccccccceehh--hHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 9999875 57899999999999999975 2111 11100 001124999999999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecc
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRG 409 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s 409 (927)
+....+..+|.|| ...|.++.|+|+. +.+++++ ++++|...++.++.++.||+..|...+| ++.++|++
T Consensus 492 le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 492 LEQLRLLGVLSGH-TRGVWCVSFSKND----QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ccCceEEEEeeCC-ccceEEEEecccc----ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 9999999999999 8999999999998 8888877 9999999999999999999999988888 89999999
Q ss_pred cCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
.||.+++|++.+++. ..++.+|++.|++++.+|++.++++||.||.+ +|.-.|
T Consensus 567 adGliKlWnikt~eC--------------------~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNEC--------------------EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CCCcEEEEeccchhh--------------------hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999988775 67899999999999999999999999999999 885433
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.3e-28 Score=265.23 Aligned_cols=453 Identities=14% Similarity=0.143 Sum_probs=327.9
Q ss_pred CCceEEEEEecCeEEEEEccC-eEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 20 SSQQIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~~~-~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
....-++.||+|.+|.++..+ ...+-+.- .+..+..+. -++++-+++|||||+.+|++. .+.+.||....
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~-~r~Vlh~f~-------fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~ 126 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLL-SRSVLHRFN-------FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPG 126 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecc-cceeeEEEe-------ecCccceEEECCCCcEEEEEe-cceeEEEecCc
Confidence 356679999999998888644 33333331 222222221 135567999999999999886 46799998752
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCC
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~ 176 (927)
.....+.+ +.......++...|+++ +.|.+.+++|+.|-..+++.-++..+-.
T Consensus 127 ~~~~~~~p---------------Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~---------- 181 (893)
T KOG0291|consen 127 EIKNEFNP---------------FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF---------- 181 (893)
T ss_pred chhcccCc---------------ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc----------
Confidence 22111100 01111123334445555 4566788888999999888766544311
Q ss_pred cccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeee---------
Q 002405 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF--------- 247 (927)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~--------- 247 (927)
...+.+|+.+|...-|.........++.||.++++..+......|..
T Consensus 182 ------------------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 182 ------------------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred ------------------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 13456788899988888888788889999999888876222222221
Q ss_pred ----cccce-------------e-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCC
Q 002405 248 ----IKIDK-------------E-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (927)
Q Consensus 248 ----~~~~~-------------~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~ 308 (927)
..++. + .....-+ |++|++.-.+||+|-..|...+|.+.+ ..+++.++. ...
T Consensus 238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSi--------s~~ 308 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSI--------SDQ 308 (893)
T ss_pred ccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeec--------ccc
Confidence 00000 0 1122345 999999999999999999999999987 788999888 567
Q ss_pred CeeEEEECCCCCEEEEEEcC-CcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCce
Q 002405 309 PVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (927)
Q Consensus 309 ~V~~l~~spdg~~Lasg~~D-g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~ 384 (927)
+|..++|+..|.+||.|+.. |.+-||+.....-+...++| ...+++++++||+ +.+++|+ ++++|+...+-
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH-~~~i~~l~YSpDg----q~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH-SDRITSLAYSPDG----QLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc-ccceeeEEECCCC----cEEEeccCCCcEEEEeccCce
Confidence 89999999999999999876 78999999887766677777 8899999999999 9999998 99999999999
Q ss_pred EEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEc
Q 002405 385 LYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (927)
Q Consensus 385 l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s 461 (927)
++.++..|.+.+.++.| ++.+++.|.||+++.||+....+- +..+.|.. -...+++..
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf--------------RTft~P~p-----~QfscvavD 444 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF--------------RTFTSPEP-----IQFSCVAVD 444 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--------------eeecCCCc-----eeeeEEEEc
Confidence 99999999999988887 889999999999999998765541 11112221 124678899
Q ss_pred cCCCEEEEEeCCceE--EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEE
Q 002405 462 KDGMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR 539 (927)
Q Consensus 462 pdG~~la~ag~dg~i--~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~ 539 (927)
|.|..+..|+.|.+- +|++++|+..-.- ..||..+....+.|.++.|+++++ +..+|+|+.. +.......
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~~LaS~SW-----DkTVRiW~if--~s~~~vEt 516 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGSLLASGSW-----DKTVRIWDIF--SSSGTVET 516 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccccCeEEeccc-----cceEEEEEee--ccCceeee
Confidence 999999999999886 9999999854221 235555444468889998888844 4689999773 22222333
Q ss_pred EecCCcc--EEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 540 KSLLAKP--IVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 540 ~~~~~~~--~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
.+++..+ +.+.|.|..|+|++-||.|.+|+.+
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 4444444 4678899999999999999999886
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.8e-29 Score=261.29 Aligned_cols=376 Identities=16% Similarity=0.233 Sum_probs=249.2
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002405 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~ 100 (927)
...|.|||||++||++ +|+++.|+|- +.+.+++.+.. +-.+.|.+.++.||||++.+++++.|.+++|||+...+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 5558999999999998 5999999999 48888888765 34578999999999999999999999999999998765
Q ss_pred ceeecC-CCCCCCccceee-------eEEeeccc------------ccccccceEEEe--eccCCeEEEEecCCcEEEEe
Q 002405 101 KSIQIG-GKQPSGLFFIKI-------SLVLNEQL------------PFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSIS 158 (927)
Q Consensus 101 ~~~~~~-~~~~~~~~~~~~-------~~~~~~~~------------~~~~~~~~v~~i--~~~~~~l~v~~~dg~i~~~~ 158 (927)
...... +....++.+.++ .++..+.+ .+.++.-.|+++ .++++.|+.|+.||.|..
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~-- 346 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS-- 346 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--
Confidence 332221 222222222211 22222221 123444456655 567789999999999875
Q ss_pred cCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC---CCccEEEEEEccCcceEEEEEeCCcEEEE
Q 002405 159 WKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP---ISSAIIWLELCLPMRLLFVLYSNGQLMSC 235 (927)
Q Consensus 159 w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~~~~s~dG~~~~~ 235 (927)
|+........+.. ..+...|..+.-+..+++.+.+-+..++.+...+ .+..+.. ...+.. .++..+||.+++.
T Consensus 347 W~~~~g~~~~~~g-~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~--lg~QP~-~lav~~d~~~avv 422 (603)
T KOG0318|consen 347 WDSGSGTSDRLAG-KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK--LGSQPK-GLAVLSDGGTAVV 422 (603)
T ss_pred EecCCcccccccc-ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee--cCCCce-eEEEcCCCCEEEE
Confidence 5544433222111 1233344444434434444444333333222211 1111222 222222 4566677665555
Q ss_pred eeecCccceeeecccceecCCC-CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEE
Q 002405 236 SVSKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (927)
Q Consensus 236 ~~~d~~~~~w~~~~~~~~~~h~-~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~ 314 (927)
...+.-+-+-+...... ..-. .+.++|++|+++.+|+|++||.|+||.+.. ..+....... .|.++|++++
T Consensus 423 ~~~~~iv~l~~~~~~~~-~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~va 494 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSS-IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVA 494 (603)
T ss_pred EecCcEEEEecCCccee-eccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEE
Confidence 44433222222211111 1112 233899999999999999999999999986 4433322221 1999999999
Q ss_pred ECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCc-eEEEEEc
Q 002405 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEE 390 (927)
Q Consensus 315 ~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~-~l~~~~~ 390 (927)
+||||.+||+|...+.+.+||+.+++....--..|++.|++++|+|++ ..+++|+ .+.+|+.+.. +.+....
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~ikn 570 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKN 570 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEecc
Confidence 999999999999999999999988766333223348999999999999 8999998 8899998754 2345556
Q ss_pred CCcceEEEEec--cceeeecccCCCeeeeee
Q 002405 391 GSSERVLIFSF--GKCCLNRGVSGMTYARQV 419 (927)
Q Consensus 391 ~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~ 419 (927)
+|...|..+.+ ...++|.+.|..+++|.+
T Consensus 571 AH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 571 AHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccccCceeEEEecCceEEeccCcceeEEecc
Confidence 78888888888 668899999999999986
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2e-28 Score=241.03 Aligned_cols=282 Identities=14% Similarity=0.156 Sum_probs=220.3
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeE
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (927)
+.+.+.++.|++|+++|++++.||.+.|||.-+.++...+ ++.....-..+++|++..+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------------pl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------------PLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE---------------------ecCceeEEEEEECCCCCeE
Confidence 4578899999999999999999999999998655432222 1222233346788999999
Q ss_pred EEEecCCcEEEEecCCcc-ccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 146 LLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 146 ~v~~~dg~i~~~~w~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
++|+-|+...+++..... .+.. .++..+.+|.+++.++.|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~-------------------------------~v~r~l~gHtgylScC~f-------- 153 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNV-------------------------------RVSRELAGHTGYLSCCRF-------- 153 (343)
T ss_pred EecCcCceeEEEecccccccccc-------------------------------eeeeeecCccceeEEEEE--------
Confidence 999888877776654221 1111 111335678888888876
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
. |...+++++.|.+.-+||.++++.. .||..-| +++++| +++.+++|+-|++.++||++. +.+.++|.+
T Consensus 154 --~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g-- 227 (343)
T KOG0286|consen 154 --L-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG-- 227 (343)
T ss_pred --c-CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc--
Confidence 3 4556789999999999999998765 7999999 999999 999999999999999999998 889999999
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccc-cccceecceecCCCCCCcccccccceeEEE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W 378 (927)
|...|++|+|.|+|..+|+|++|++.++||+...+.+..+... -..+|++++||..
T Consensus 228 ------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S----------------- 284 (343)
T KOG0286|consen 228 ------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS----------------- 284 (343)
T ss_pred ------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----------------
Confidence 9999999999999999999999999999999887666554321 0112222222222
Q ss_pred cCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE
Q 002405 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
|+.+.+|..|.++.+||...++. ...+.||.+.|.++
T Consensus 285 -----------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 285 -----------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHENRVSCL 321 (343)
T ss_pred -----------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccCCeeEEE
Confidence 55666777888999999887765 55677999999999
Q ss_pred EEccCCCEEEEEeCCceE-EEE
Q 002405 459 AASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 459 a~spdG~~la~ag~dg~i-~wd 479 (927)
..+|||.-+++|+-|.++ +|.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 999999999999999888 884
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=261.06 Aligned_cols=425 Identities=16% Similarity=0.161 Sum_probs=282.9
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
..-.++.+||+.+|.++. ..-+++|+.. .+ .+.|+-+ ..+.+++..++|.|-|..+|+|+.||.+++||+..+
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~-tg----k~irswK-a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~ 137 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSLP-TG----KLIRSWK-AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG 137 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEcc-cc----hHhHhHh-hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC
Confidence 344478999999888886 5579999995 43 3444433 236799999999999999999999999999999855
Q ss_pred CceeecCCCCCC----------------------CccceeeeEEeecccccccccceEE--EeeccCCeEEEEecCCcEE
Q 002405 100 EKSIQIGGKQPS----------------------GLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLY 155 (927)
Q Consensus 100 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~ 155 (927)
.....+.++++. ...+|++.-....-.....+...|+ ++.+|+..++.++.|..+.
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~ 217 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVII 217 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEE
Confidence 433344443321 1122322111110011122222333 4567788899999999988
Q ss_pred EEecCCccccceeecccCCCCcccccccccCCC--C-CccccCCCcee----------cccccCCCccEEEEEEccCcce
Q 002405 156 SISWKGEFYGAFELVHSSNDSSVAALSHHFPSN--G-LASVDTSGAFV----------SDHKFPISSAIIWLELCLPMRL 222 (927)
Q Consensus 156 ~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~-l~~~~~~~~~~----------~~~~~~~~~~i~~i~~~~~~~~ 222 (927)
+|+........ .++.. ......-..+-..++ + +.+.++.+... ...-.+....+..+.+.+.+..
T Consensus 218 vwd~~~~~~l~-~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 218 VWDLVQYKKLK-TLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred Eeehhhhhhhh-eechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 87652211100 00000 000000000000000 0 00111111000 0000000111223333333322
Q ss_pred EEE---------------------------------EEeCCcEEEEeeecCccceeeecccce--ecCCCCeE-EEEEcC
Q 002405 223 LFV---------------------------------LYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAP 266 (927)
Q Consensus 223 ~~~---------------------------------~s~dG~~~~~~~~d~~~~~w~~~~~~~--~~~h~~~v-~v~~sp 266 (927)
++. ..|+-+.++++++.+.+++.+..+..+ ..||++.| +++...
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS 375 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc
Confidence 222 334556677777777788877665544 38999999 999888
Q ss_pred CCcEEEEEecCCeEEEEeccCCCc---ceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEccCCe--
Q 002405 267 EQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCR-- 340 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~---~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~Dg~v~vW~~~~~~-- 340 (927)
+|-+||+|+.|.++++|.+++... ++.... +|++.|.+++++..| .+|+++|.|+++++|++...+
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~--------gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN--------GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhc--------ccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence 899999999999999999954221 222233 399999999998765 489999999999999996621
Q ss_pred -----eEE--EeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeee
Q 002405 341 -----LMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLN 407 (927)
Q Consensus 341 -----~~~--~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s 407 (927)
+.+ +-..| ...|++++++|+. ..+++|+ +.++|+.+..++..++.||..+|++++| .+.++|
T Consensus 448 ~~~~~~~~~~t~~aH-dKdIN~Vaia~nd----kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 448 AFPIVLTCRYTERAH-DKDINCVAIAPND----KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred cccceehhhHHHHhh-cccccceEecCCC----ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEe
Confidence 111 22234 7889999999998 8999999 8999999999999999999999988888 446899
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~ 486 (927)
+|.|+|+++|.+..... ..++.||...|.-++|-.+|+.|++||.||.+ +||+.++...
T Consensus 523 ~SgD~TvKIW~is~fSC--------------------lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSC--------------------LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ccCCceEEEEEecccee--------------------eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999999876554 67899999999999999999999999999999 9999987653
No 15
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-25 Score=246.68 Aligned_cols=266 Identities=13% Similarity=0.177 Sum_probs=222.9
Q ss_pred EEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEE
Q 002405 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (927)
Q Consensus 136 ~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (927)
.+|.|....++++..+|.|+.|++.-.. -. ..+.+|.++|+.+.
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~t--li----------------------------------~rFdeHdGpVRgv~ 58 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGT--LI----------------------------------DRFDEHDGPVRGVD 58 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhh--HH----------------------------------hhhhccCCccceee
Confidence 3677888999999999999997654211 00 12467899999887
Q ss_pred EccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcc
Q 002405 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (927)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~ 291 (927)
| .|++.++++|++|..+++|+....++. .||-+.| .+.|++...+|.++|.|.|||||++.+ ..+
T Consensus 59 F----------H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~ 127 (1202)
T KOG0292|consen 59 F----------HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKC 127 (1202)
T ss_pred e----------cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-Cce
Confidence 6 788899999999999999998876654 8999999 999999999999999999999999998 889
Q ss_pred eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe-----------------------------eE
Q 002405 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-----------------------------LM 342 (927)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~-----------------------------~~ 342 (927)
+..+.+ |.--|.|.+|.|....++|||-|.+|||||+.|-+ ..
T Consensus 128 iavltG--------HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 128 IAVLTG--------HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EEEEec--------CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 999999 99999999999999999999999999999985411 12
Q ss_pred EEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEE--EcCCcceE--EEEec-cceeeecccCCCe
Q 002405 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI--EEGSSERV--LIFSF-GKCCLNRGVSGMT 414 (927)
Q Consensus 343 ~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~--~~~~~~~v--~~~~~-~~~~~s~s~d~~~ 414 (927)
..++|| ...|+-++|+|.. ..++||+ .+++|.....+.|-+ ..||.+.| +.|.+ ...++|.|.|+++
T Consensus 200 ~VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 200 HVLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred eeeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccE
Confidence 345666 8889999999998 8889998 899999887776654 46898888 55555 6789999999999
Q ss_pred eeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEcc
Q 002405 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (927)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~ 481 (927)
++||...... .+++.-.++..+.++.+|.++.+|.|-..|.++|-+.
T Consensus 275 rVwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 275 RVWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred EEEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 9999765443 4567677888999999999999998888888888764
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=4.2e-28 Score=268.85 Aligned_cols=228 Identities=18% Similarity=0.275 Sum_probs=207.1
Q ss_pred ceEEEEEeCCcEEEEeeecCccceeeecccc----------------------------------eecCCCCeE-EEEEc
Q 002405 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KELGSGDAV-CASIA 265 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~----------------------------------~~~~h~~~v-~v~~s 265 (927)
..++.|++|++++|.|..|..+++|.....+ .+.||+++| .++|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 4778899999999999999999999765210 014899999 99999
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 266 p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
|+.++|+++|+|++||+|.+++ ..++...++ |..||+++.|+|-|.++|||+.|++-++|+.......+.+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t-~s~~V~y~G--------H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKG--------HLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ccccceeeccCCcceeeeeccc-ceeEEEecC--------CCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 9999999999999999999998 778888888 9999999999999999999999999999999988888889
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQV 419 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~ 419 (927)
.+| .+.|.++.|+|+. .++++|+ ++++|+..++..++.+.||.+.| +++++ |+++++|+.|+.+++||+
T Consensus 532 agh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 532 AGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 888 9999999999999 8999998 99999999999999999999999 45555 999999999999999998
Q ss_pred eecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
..+.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 607 ~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 87664 67788999999999999999999999999999 999854
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-26 Score=226.87 Aligned_cols=279 Identities=16% Similarity=0.235 Sum_probs=219.5
Q ss_pred cccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc--------ceecCCCCeE-EEEEcCCCcEEEE
Q 002405 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAV-CASIAPEQQILAV 273 (927)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~--------~~~~~h~~~v-~v~~sp~~~~la~ 273 (927)
.+.+|+..|+.+.-.+ .+-..++.++.|.++..|++... +.+.||+..| .++.++||++..+
T Consensus 10 tl~gh~d~Vt~la~~~---------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKI---------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred eecCCCceEEEEEeec---------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 4556777787765321 23457777788888888876532 2237999999 9999999999999
Q ss_pred EecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccce
Q 002405 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (927)
Q Consensus 274 g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (927)
|+.||++|+||+.+ ++..+.|.+ |+..|.+++||||.+.+++|+.|+++++|++.+.+.....++.+...|
T Consensus 81 ~swD~~lrlWDl~~-g~~t~~f~G--------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 81 ASWDGTLRLWDLAT-GESTRRFVG--------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred ccccceEEEEEecC-CcEEEEEEe--------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 99999999999998 788899999 999999999999999999999999999999988754444333337899
Q ss_pred ecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEE
Q 002405 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (927)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~ 427 (927)
+++.|+|+. ....+++++ ++++|+.++.++.....+|+..+ +.+++ |..+++|+.|+...+||+..++.
T Consensus 152 scvrfsP~~--~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--- 226 (315)
T KOG0279|consen 152 SCVRFSPNE--SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--- 226 (315)
T ss_pred EEEEEcCCC--CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce---
Confidence 999999994 226777777 99999999999999999999888 66677 88999999999999999987765
Q ss_pred EeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEE------eeCCccceeeeEEEE
Q 002405 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQSKG 501 (927)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~------~f~~~~~e~~~~v~~ 501 (927)
..+++|..+|.+++|+|+.-.|+.|...+..+||+.+++.- ..+......+..|..
T Consensus 227 ------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 227 ------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred ------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 23567889999999999999999998888669999987631 111111122344778
Q ss_pred EEee--CCEEEEEEeecCCCeEEEEEee
Q 002405 502 LLWL--GKIIVVCNYIDSSNTYELLFYP 527 (927)
Q Consensus 502 ~~W~--~~~li~~~~~~~~~~~~l~l~~ 527 (927)
++|. |..|..+ + .+.-||+|.
T Consensus 289 laws~dG~tLf~g-~----td~~irv~q 311 (315)
T KOG0279|consen 289 LAWSADGQTLFAG-Y----TDNVIRVWQ 311 (315)
T ss_pred EEEcCCCcEEEee-e----cCCcEEEEE
Confidence 9998 5566655 3 224466663
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=7.4e-28 Score=266.89 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=199.1
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~ 279 (927)
+.+|.++|.... |+||.+++++++.|+++++|...+..+. .||..+| ++.|+|.|-++|||+.|++
T Consensus 447 L~GH~GPVyg~s----------FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCS----------FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeee----------ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 577888887766 4899999999999999999998876554 7999999 9999999999999999999
Q ss_pred EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceec
Q 002405 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
-++|..+. ..+++.+.+ |-+.|.|++|+|++.++|+||.|++|++||+.+|..++.+.|| .++|.+++||
T Consensus 517 ArLWs~d~-~~PlRifag--------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~S 586 (707)
T KOG0263|consen 517 ARLWSTDH-NKPLRIFAG--------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFS 586 (707)
T ss_pred eeeeeccc-CCchhhhcc--------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEc
Confidence 99999987 778888888 9999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEE-----
Q 002405 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV----- 428 (927)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~----- 428 (927)
|+| ..++||+ .+++||..+++++..+.+|.+.|..++| |..++++|.|.++++||+.+.......
T Consensus 587 p~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~ 662 (707)
T KOG0263|consen 587 PCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIST 662 (707)
T ss_pred CCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccc
Confidence 999 9999998 8999999999999999999999977777 889999999999999998764432110
Q ss_pred eecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEE
Q 002405 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (927)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~a 470 (927)
+.+....... ....+...|...+.||..+.|....-.+++|
T Consensus 663 ~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 663 SNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 0000000000 0011223444556688888887655444444
No 19
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.4e-26 Score=247.71 Aligned_cols=426 Identities=12% Similarity=0.105 Sum_probs=290.6
Q ss_pred eEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002405 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 23 ~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~ 101 (927)
..++-++|.-+||++ .|+.|+||+.. ....+..+. .+...++.+.|..+|.+||+|+.|+.|.+||+-....
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~-s~~~~~tfn------gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G 141 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLE-SEEILITFN------GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG 141 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccC-CCceeeeec------ccccceEEEEEcccCceEeecCCCccEEEEEecccee
Confidence 345556778889999 69999999985 433333221 1345678899999999999999999999999964433
Q ss_pred eeecCCCCC--------------------CCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCC
Q 002405 102 SIQIGGKQP--------------------SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161 (927)
Q Consensus 102 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~ 161 (927)
.....+|.. .-.-+|+++-..-+.. ...+.+.+.+++.+++.+++++.++.+.+|...-
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T-hvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET-HVDHRGEIWALVLDEKLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE-EecccceEEEEEEecceEEEEecCCceEEEEeec
Confidence 333334321 1122344322221111 1234556677777778888888888888876611
Q ss_pred cccc----------------------ceeec---------ccC-------------------------------------
Q 002405 162 EFYG----------------------AFELV---------HSS------------------------------------- 173 (927)
Q Consensus 162 ~~~~----------------------~~~~~---------~~~------------------------------------- 173 (927)
+... ...+. ++.
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 1000 00000 000
Q ss_pred --------------------CCCcccccccccCCC---------C-----Ccccc----CCCceecccccCCCccEEEEE
Q 002405 174 --------------------NDSSVAALSHHFPSN---------G-----LASVD----TSGAFVSDHKFPISSAIIWLE 215 (927)
Q Consensus 174 --------------------~~~~~i~~~~~~~~~---------~-----l~~~~----~~~~~~~~~~~~~~~~i~~i~ 215 (927)
.-...+.++|..... . +.... .......+...+|...|++++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 000000000100000 0 00000 000111233456677777776
Q ss_pred EccCc-----------------------------ceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EE
Q 002405 216 LCLPM-----------------------------RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CA 262 (927)
Q Consensus 216 ~~~~~-----------------------------~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v 262 (927)
++... .....|-|.++++++|...|.+.++|...... ...|.+++ ++
T Consensus 381 vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi 460 (888)
T KOG0306|consen 381 VSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI 460 (888)
T ss_pred eecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence 65431 12344557777888888888888887765432 36899999 99
Q ss_pred EEcCCCcEEEEEecCCeEEEEeccC----CCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 263 SIAPEQQILAVGTRRGVVELYDLAE----SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 263 ~~sp~~~~la~g~~Dg~V~vwd~~~----~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
+.+||++.+++|+.|.+|++||..- ++...+.++..+- ..-.-+..|.|+++||||++||++--|++|+||-+.+
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 9999999999999999999999752 1211121222100 0001357799999999999999999999999999999
Q ss_pred CeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCC
Q 002405 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (927)
Q Consensus 339 ~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~ 412 (927)
-+..-+|-|| .-+|.++..||++ ..+++|+ ++++|+.+-|.+...+-+|++.|..+.| ...+.|+|.|+
T Consensus 540 lKFflsLYGH-kLPV~smDIS~DS----klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 540 LKFFLSLYGH-KLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred eeeeeeeccc-ccceeEEeccCCc----CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 9999999999 7799999999999 8899988 9999999999999999999999976666 55778999999
Q ss_pred CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
.++.||-..-+. .+.+.+|...|++++++|+|.+++++|.|..+ +|....
T Consensus 615 kvKqWDg~kFe~--------------------iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 615 KVKQWDGEKFEE--------------------IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEeechhhhhh--------------------heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999998544333 67788999999999999999999999999999 998643
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.4e-26 Score=220.24 Aligned_cols=278 Identities=12% Similarity=0.138 Sum_probs=215.6
Q ss_pred ecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 253 ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
..+|.+.+ .++|+|- |.+||+|+.|.+||+|+...+. .+...+.. +|+..|++++|||.|++||+|+.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeecc
Confidence 47899999 9999998 9999999999999999987411 22233332 499999999999999999999999
Q ss_pred CcEEEEEccCC--eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCC---CceEEEEEcCCcceE--EE
Q 002405 329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LI 398 (927)
Q Consensus 329 g~v~vW~~~~~--~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v--~~ 398 (927)
.++.||.-.++ +++.+|+|| .+.|.+++|++++ .+|++++ ++-+|... .+++..++++|...| +.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 99999988654 578899999 8999999999999 9999988 67788765 468888999998887 55
Q ss_pred Eec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002405 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (927)
Q Consensus 399 ~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i- 476 (927)
+.| ...++|+|.|.++++|.-..+++ |. +.+++.+|+..|.+++|+|+|..|++++.|+++
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W~---c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDD--------------WE---CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCC--------------ee---EEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 566 67889999999999998654333 33 356677899999999999999999999999999
Q ss_pred EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCC-CCCccce------eEEEecCCccEEE
Q 002405 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSL------LCRKSLLAKPIVM 549 (927)
Q Consensus 477 ~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~-~l~~~~~------~~~~~~~~~~~~~ 549 (927)
+|-..+ .....++..+-.+.|..+.+.++ .++..+|+|... ..+.... -..+...-..+..
T Consensus 221 Iw~~~~-------~~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 221 IWRLYT-------DLSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eeeecc-------CcchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 997543 22233334456788985555555 356789999764 2222111 1123333445677
Q ss_pred Ec-cCCEEEEEEcCCeEEEEEEE
Q 002405 550 DV-YEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 550 ~~-~~~~l~v~~~d~~i~l~~~~ 571 (927)
+| ..+.|+.+.+||.+.+|.++
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 88 47789999999999999875
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-25 Score=220.04 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=216.9
Q ss_pred ecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCC----CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 253 ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
+.+|.+.| .++..++ ...+.+++.|.++-+|++... |...+.+.+ |.-.|..++.++||++..+++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------HsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------HSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------cceEecceEEccCCceEEecc
Confidence 37899999 9999987 678999999999999999642 456778888 999999999999999999999
Q ss_pred cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCC-cceE--EEEe
Q 002405 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERV--LIFS 400 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v--~~~~ 400 (927)
.|+++++||+.+++..+.|.+| ...|.+++|+|++ ..++||+ ++++|+.-+...+....+. .+-| +.|+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 9999999999999999999999 7889999999998 8899998 9999998877665555443 6667 5555
Q ss_pred c---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002405 401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (927)
Q Consensus 401 ~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i- 476 (927)
| .-.++++|.|+++++|++.+.+- ...+.+|++.++.+++||||..+|+||+||.+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 5 33789999999999999876543 67889999999999999999999999999999
Q ss_pred EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCC-C--CCc---cceeEEEecCCcc----
Q 002405 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-H--LDQ---SSLLCRKSLLAKP---- 546 (927)
Q Consensus 477 ~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~-~--l~~---~~~~~~~~~~~~~---- 546 (927)
+||++.++.- .. -+..-.+..+++.++-...|.... ..+++|+.+ . .+. ........ ...+
T Consensus 218 LwdL~~~k~l-ys---l~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~~v~~l~~d~~g~s~~-~~~~~cls 288 (315)
T KOG0279|consen 218 LWDLNEGKNL-YS---LEAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKAVVEELKLDGIGPSSK-AGDPICLS 288 (315)
T ss_pred EEEccCCcee-Ee---ccCCCeEeeEEecCCceeEeeccC----CceEEEeccchhhhhhccccccccccc-cCCcEEEE
Confidence 9999988752 11 111123668888877555543322 349999874 1 111 11111000 1123
Q ss_pred EEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 547 IVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 547 ~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+..+..|..|+.+++|+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 3446678899999999999999874
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=3.7e-27 Score=241.74 Aligned_cols=265 Identities=14% Similarity=0.205 Sum_probs=219.7
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccc--ce-ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI--DK-ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~--~~-~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+..+|+|+.+++++..|.+.+|++... +. ...|.++| ++.|++++.++++|..+|.|++|+... ..++.+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~a-- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQA-- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhH--
Confidence 455899999999999999999997543 22 27899999 999999999999999999999999864 34444444
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (927)
.|...|++++|||....++++++||+|+|||..-.+....|++| .-.|.+++++|.. ..+++|+ .++
T Consensus 178 -----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwdVksvdWHP~k----gLiasgskDnlVK 247 (464)
T KOG0284|consen 178 -----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWDVKSVDWHPTK----GLIASGSKDNLVK 247 (464)
T ss_pred -----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCCcceeccCCcc----ceeEEccCCceeE
Confidence 15599999999999999999999999999999888888889998 5679999999997 7888888 899
Q ss_pred EEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
+||+.+++++.++.+|...|..+.| +..++|+|.|.+++++|+..-++ ...+.+|..
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hkk 307 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHKK 307 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcchh
Confidence 9999999999999999999977777 88999999999999999885444 567889999
Q ss_pred ceEEEEEccC-CCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 454 PVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 454 ~I~~va~spd-G~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
.|++++|+|- ...+++||.||.+ +|.+...+ ..+......+..+..|.|. |+++..| +++..+|+|.+.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg-----snd~t~rfw~r~ 380 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG-----SNDRTVRFWTRN 380 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec-----CCCcceeeeccC
Confidence 9999999995 6688899999999 99876211 1222222233347788997 5555554 567889999885
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=4.9e-27 Score=240.82 Aligned_cols=277 Identities=16% Similarity=0.189 Sum_probs=219.2
Q ss_pred cccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe--eccCCe
Q 002405 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~ 144 (927)
.-.+..|.|.|+|+.|++|+..|.+.+|+.. .+.+......++..|+++ +.++..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhcccceeEEEccCCCE
Confidence 3456789999999999999999999999863 223333344555566655 566778
Q ss_pred EEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 145 l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
++.|..+|.|+. |+...+... ..-..|...|++++|
T Consensus 153 miSgD~gG~iKy--WqpnmnnVk----------------------------------~~~ahh~eaIRdlaf-------- 188 (464)
T KOG0284|consen 153 MISGDKGGMIKY--WQPNMNNVK----------------------------------IIQAHHAEAIRDLAF-------- 188 (464)
T ss_pred EEEcCCCceEEe--cccchhhhH----------------------------------HhhHhhhhhhheecc--------
Confidence 888888888887 665443222 111234577888765
Q ss_pred EEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
+|+...++++++|+++++||...++. +.||.--| |++|+|...+||+|+.|..|++||-.+ ++++.++.+
T Consensus 189 --SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~--- 262 (464)
T KOG0284|consen 189 --SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG--- 262 (464)
T ss_pred --CCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh---
Confidence 67777888999999999999876543 37999888 999999999999999999999999998 899999998
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcC
Q 002405 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~ 380 (927)
|+..|..+.|+|+|.+|+++|+|..++++|+...+.+.++++| ...|.++.++|-. +
T Consensus 263 -----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~------------- 319 (464)
T KOG0284|consen 263 -----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----E------------- 319 (464)
T ss_pred -----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----c-------------
Confidence 9999999999999999999999999999999987788888888 6666666666543 1
Q ss_pred CCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEE
Q 002405 381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (927)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~ 460 (927)
..+++|+.|+.+..|.+...+. ++..-.+|...|+++++
T Consensus 320 ----------------------~lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 320 ----------------------SLFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAY 358 (464)
T ss_pred ----------------------cceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeec
Confidence 1236788888888888763222 23334578899999999
Q ss_pred ccCCCEEEEEeCCceE-EEEc
Q 002405 461 SKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 461 spdG~~la~ag~dg~i-~wd~ 480 (927)
+|=|..||+|+.|.++ .|..
T Consensus 359 hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeEeecCCCcceeeecc
Confidence 9999999999999999 8874
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=221.17 Aligned_cols=278 Identities=16% Similarity=0.147 Sum_probs=217.9
Q ss_pred ccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecC
Q 002405 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR 277 (927)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~D 277 (927)
..+.+|...|.++.| ++|++.+++++.|+.+.+||..+..+. +-....| .+||+|.|+++|.|+-|
T Consensus 49 r~LkGH~~Ki~~~~w----------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW----------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEe----------cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 346788899999987 678888888888888888998765442 3346778 99999999999999999
Q ss_pred CeEEEEeccCC--C---cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccc
Q 002405 278 GVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (927)
Q Consensus 278 g~V~vwd~~~~--~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~ 352 (927)
....||++... . ...+.+.+ |++-+.|+.|-+|+ .|++|+.|.+..+||+++++....+.+| ...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~g--------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gD 188 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAG--------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGD 188 (343)
T ss_pred ceeEEEecccccccccceeeeeecC--------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-ccc
Confidence 99999999852 1 23345566 99999999999865 5778899999999999999999999999 889
Q ss_pred eecceecC-CCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCe
Q 002405 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDR 425 (927)
Q Consensus 353 v~s~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~ 425 (927)
|.++.++| ++ +.++||+ +.++||.+.+.+..++.+|+..|.++.| |..++||+.|++.+++|+... .+
T Consensus 189 V~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~ 263 (343)
T KOG0286|consen 189 VMSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QE 263 (343)
T ss_pred EEEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cE
Confidence 99999999 55 7788887 8999999999999999999999955555 889999999999999998753 33
Q ss_pred EEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEe
Q 002405 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (927)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W 504 (927)
+.+|.. ..-+.+|++++||..|++|..|..|..+ +||...++--. .-..||+.+.+.++.-
T Consensus 264 ~a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 264 LAVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLAGHENRVSCLGVSP 325 (343)
T ss_pred Eeeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-EeeccCCeeEEEEECC
Confidence 433331 1234579999999999999999999999 99987665211 1124666555555544
Q ss_pred eCCEEEEEEeecCCCeEEEEEee
Q 002405 505 LGKIIVVCNYIDSSNTYELLFYP 527 (927)
Q Consensus 505 ~~~~li~~~~~~~~~~~~l~l~~ 527 (927)
.|--+.++ +-+..+|+|.
T Consensus 326 DG~av~Tg-----SWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATG-----SWDSTLRIWA 343 (343)
T ss_pred CCcEEEec-----chhHheeecC
Confidence 44444444 2345678873
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.8e-26 Score=242.61 Aligned_cols=352 Identities=14% Similarity=0.110 Sum_probs=259.5
Q ss_pred cceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCc
Q 002405 132 GLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (927)
Q Consensus 132 ~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (927)
..+|.++ .|....++++.-+|.+++|+.+.+..
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm--------------------------------------------- 47 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM--------------------------------------------- 47 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEeccccee---------------------------------------------
Confidence 3455554 56667899999999999977664331
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEec
Q 002405 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (927)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~ 285 (927)
|.+++.+......+.|-+-...+++|++|+.+++++..+.++. ..|.+.+ |++++|.-.++.++|.|-+|++||.
T Consensus 48 -VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 48 -VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred -eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 1222222222222334556678899999999999998887664 7899999 9999999999999999999999999
Q ss_pred cCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCC
Q 002405 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (927)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~ 364 (927)
+..-.+.+++.+ |+--|.+++|.| |.+.+|+|+-|+||+||++....+..||++| ...|+++.+-+.+
T Consensus 127 e~~wa~~qtfeG--------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~g-- 195 (794)
T KOG0276|consen 127 ENEWACEQTFEG--------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGG-- 195 (794)
T ss_pred cCceeeeeEEcC--------cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCC--
Confidence 986688899999 999999999999 7889999999999999999999999999998 8899999998876
Q ss_pred Ccccccccc---eeEEEcCCCceEEEEEcCCcceEEEE--ec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcce
Q 002405 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (927)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (927)
.+.+++||+ ++++||..+..++.++.||...|-.. .+ -..++|||.||++++|...+-..
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l-------------- 261 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL-------------- 261 (794)
T ss_pred CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh--------------
Confidence 446888988 99999999999999999999988444 44 56789999999999998654332
Q ss_pred EEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeCCccceeeeEEEE-EEeeCCEEEEE-Eeec
Q 002405 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVC-NYID 516 (927)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~~~~~e~~~~v~~-~~W~~~~li~~-~~~~ 516 (927)
..++.-.-..|++++-.+.++.+|+|...|.+..++- .+...-++...| +.|..+.-|.+ ..+.
T Consensus 262 ------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lg--------reeP~vsMd~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 262 ------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLG--------REEPAVSMDSNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred ------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEcc--------CCCCceeecCCccEEEEcCceeeeeecee
Confidence 2334444568999999999999999999999865542 222223344444 88876654443 2211
Q ss_pred CCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEE
Q 002405 517 SSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 517 ~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~ 570 (927)
-....++.=-.+-.|.-..+.....+| +.+..+|+|..++| +.||...+|.-
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyP-q~L~hsPNGrfV~V-cgdGEyiIyTa 379 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYP-QTLAHSPNGRFVVV-CGDGEYIIYTA 379 (794)
T ss_pred ccCcccccCCccccchhhhccccccch-HHhccCCCCcEEEE-ecCccEEEEEe
Confidence 111112221111122222333333344 36778888877666 78999999874
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=2e-25 Score=232.96 Aligned_cols=325 Identities=15% Similarity=0.151 Sum_probs=251.2
Q ss_pred hcccccEEEEcCCcc-EEEEEecCcEEEEEEEEecCceeec---CCCCCCCccceeeeEEeecccccccccceEEEeecc
Q 002405 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQI---GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD 141 (927)
Q Consensus 66 ~~G~~~~v~wspDg~-~Lav~t~dg~l~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 141 (927)
+..++++.+|+|-.. .+|+++.+...++|++......... -.|. +. ..++-... ...|++++.+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~--------~~--~~~~s~~~--nkdVT~L~Wn 244 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHC--------IR--EGGKSVPS--NKDVTSLDWN 244 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhh--------hh--hhcccCCc--cCCcceEEec
Confidence 456789999999777 8999999999999999742211100 0000 00 00000001 1235666554
Q ss_pred --CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccC
Q 002405 142 --NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (927)
Q Consensus 142 --~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 219 (927)
+..|++|..+|.+++|.-++.... .+..|+++|.++.|
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slKW--- 284 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLKW--- 284 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEEE---
Confidence 788999999999999766554322 23467889999887
Q ss_pred cceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCe-EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEE
Q 002405 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (927)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~-v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l 295 (927)
..+|.++++++-|+++.+||..+++.. .-|..+ ..|.|-. ..-+|+.+.||.|+|+.+.. .+++.++
T Consensus 285 -------nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~-~~P~~t~ 355 (524)
T KOG0273|consen 285 -------NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE-DRPVKTF 355 (524)
T ss_pred -------cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecC-CCcceee
Confidence 678888888888999999998776543 446655 3677744 45688999999999999987 7889999
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC-----ccccc
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK-----YEPLM 370 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~-----~~~l~ 370 (927)
.+ |.++|.+|.|.|.|.+|+++++|+|++||+.........|..| ...+..+.++|+++-+ ...++
T Consensus 356 ~G--------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 356 IG--------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred ec--------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCCceEE
Confidence 99 9999999999999999999999999999999888888899988 7889999999998621 23445
Q ss_pred ccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeec
Q 002405 371 SGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (927)
Q Consensus 371 sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~ 444 (927)
+++ ++++|+...+.++.++..|..+|++++| ++++++|+.|+.+.+|+...++.
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l-------------------- 486 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL-------------------- 486 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe--------------------
Confidence 444 9999999999999999999999977777 89999999999999999876654
Q ss_pred CcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 445 ~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
...+.+ ++.|..++|+.+|..|.++-.||.+ +-|++
T Consensus 487 ~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 487 VKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 344443 4459999999999999999999988 77753
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.2e-25 Score=213.36 Aligned_cols=270 Identities=12% Similarity=0.227 Sum_probs=216.0
Q ss_pred cCCCccEEEEEEccCcceEEEEEeC-CcEEEEeeecCccceeeeccccee-------cCCCCeE-EEEEcCCCcEEEEEe
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGT 275 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~~~~-------~~h~~~v-~v~~sp~~~~la~g~ 275 (927)
.+|+..+..++| +|- |.++++++.|..+++|+...+..+ .+|..+| ++||+|.|++||+||
T Consensus 11 ~gh~~r~W~~aw----------hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 11 SGHKDRVWSVAW----------HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred cCCCCcEEEEEe----------ccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 455666777666 444 889999999999999987743222 5799999 999999999999999
Q ss_pred cCCeEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC---eeEEEecccccc
Q 002405 276 RRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLS 351 (927)
Q Consensus 276 ~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~ 351 (927)
-|.++.||.-.+. -+++.++.+ |...|.|++||++|++||+++.|+.|-||.+... .+...|++| +.
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEG--------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tq 151 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEG--------HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQ 151 (312)
T ss_pred ccceEEEeecCCCceeEEeeeec--------cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cc
Confidence 9999999987641 267788888 9999999999999999999999999999999643 466788888 88
Q ss_pred ceecceecCCCCCCcccccccc---eeEEEcCC---CceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeec
Q 002405 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~ 422 (927)
.|..+.|+|.. ..|+|++ ++++|.-. .-++..++.+|.+.|+.+.| |..+++++.|+++++|.....
T Consensus 152 DVK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 152 DVKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 99999999998 8889888 99999765 35788899999999988877 779999999999999985522
Q ss_pred CCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC----CcEEeeCCccceeee
Q 002405 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKI 497 (927)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s----~~w~~f~~~~~e~~~ 497 (927)
- + .-|.+++..++|. ...||+||.|+.+ +|.... ..|+++....+.++.
T Consensus 228 ~---------------------~---~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 228 L---------------------S---GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred c---------------------c---hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 1 1 2377889999998 4579999999999 887654 457776644444445
Q ss_pred EEEEEEeeC---CEEEEEEeecCCCeEEEEEeeC
Q 002405 498 QSKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 498 ~v~~~~W~~---~~li~~~~~~~~~~~~l~l~~~ 528 (927)
.+..+.|.+ +.|++| +.+..+++|..
T Consensus 282 dVNsV~w~p~~~~~L~s~-----~DDG~v~~W~l 310 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASG-----GDDGIVNFWEL 310 (312)
T ss_pred ccceEEEcCCCCCceeec-----CCCceEEEEEe
Confidence 677899985 344544 34478888854
No 28
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.5e-23 Score=229.90 Aligned_cols=499 Identities=11% Similarity=0.130 Sum_probs=325.9
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~ 101 (927)
+.++.=+..|+++|+..-..|.+||.+ .+... +.........++++++=+||.-.||+|-.||.|+||+...+..
T Consensus 25 ~~~~~~~~~Gr~va~~a~E~vn~WdlR-tge~~----~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~ 99 (888)
T KOG0306|consen 25 NFVVKRSGKGRAVAVSALEQVNIWDLR-TGEIE----KKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI 99 (888)
T ss_pred eEEEeecCCCcEEEEeccccEeEEeee-cchhh----hhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCce
Confidence 333434445899988777789999996 44211 1111112235778888899999999999999999999875533
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
...+++| ...|++ +...|..++.|+.|+.|.+|+.-++. +.+.+. +|...|
T Consensus 100 ~~tfngH-----------------------K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl~rL~---GHkd~i 152 (888)
T KOG0306|consen 100 LITFNGH-----------------------KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GLFRLR---GHKDSI 152 (888)
T ss_pred eeeeccc-----------------------ccceEEEEEcccCceEeecCCCccEEEEEeccce-eeEEee---cchHHH
Confidence 3333333 334443 34557889999999999987766555 333322 233333
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc--c------
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--D------ 251 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~--~------ 251 (927)
...-|..+..+..+.....+.+.|....+.++..+..+......+++.+ +.++++..|+.+++|++... +
T Consensus 153 T~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 153 TQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred hHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccccc
Confidence 3333433333322222223555666666667766666666666666654 88888889999999998211 0
Q ss_pred --e-------ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCC---------------------------------
Q 002405 252 --K-------ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA--------------------------------- 289 (927)
Q Consensus 252 --~-------~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--------------------------------- 289 (927)
. ..+....+.++..+++++++.-+.|..+.+|.+....
T Consensus 231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~ 310 (888)
T KOG0306|consen 231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE 310 (888)
T ss_pred ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence 0 0223334577777888888888888888888764300
Q ss_pred -----------------------cc--eEEEeee-------cC--CC-----------CCCCCCCeeEEEECCCCCEEEE
Q 002405 290 -----------------------SL--IRTVSLY-------DW--GY-----------SMDDTGPVSCIAWTPDNSAFAV 324 (927)
Q Consensus 290 -----------------------~~--~~~l~~~-------~~--~~-----------~~~h~~~V~~l~~spdg~~Las 324 (927)
.. +..+..+ +. +. -.+|...|.++++|.|...+++
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S 390 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS 390 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee
Confidence 00 0000000 00 00 1279999999999999999999
Q ss_pred EEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec
Q 002405 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (927)
Q Consensus 325 g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (927)
|+. +.+++|+..+.+++.++.. ..+.+..|-|.+ ..++.|. ...+++..+..++-+..+|++.|+.++.
T Consensus 391 ga~-~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd----~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 391 GAG-ESIKIWNRDTLKCIRTITC---GYILASKFVPGD----RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred cCC-CcEEEEEccCcceeEEecc---ccEEEEEecCCC----ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 876 7999999999999999874 357777788877 6666665 6777888888888888899999977766
Q ss_pred ---cceeeecccCCCeeeeeeeecCC------eEE-EeecC--C----------CCcce---------------EEEeec
Q 002405 402 ---GKCCLNRGVSGMTYARQVIYGED------RLL-VVQSE--D----------TDELK---------------ILHLNL 444 (927)
Q Consensus 402 ---~~~~~s~s~d~~~~~w~~~~~~~------~~~-~~~~~--~----------~~~~~---------------w~~~~~ 444 (927)
++.++|||.|.++++|++..-.+ +++ +-+.. + .++.+ ....+.
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 88999999999999999864322 111 10100 0 01110 123344
Q ss_pred CcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeCCccceeeeEEEEEEee-CCEEEEEEeecCCCeE
Q 002405 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTY 521 (927)
Q Consensus 445 ~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~v~~~~W~-~~~li~~~~~~~~~~~ 521 (927)
..++.||.-||.|+.+|||++.+++||.|..+ +|-+.=|... .| -.|+.+ +..+.+. ...+...| +.+.
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--fAHdDS--vm~V~F~P~~~~FFt~----gKD~ 614 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--FAHDDS--VMSVQFLPKTHLFFTC----GKDG 614 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh--hcccCc--eeEEEEcccceeEEEe----cCcc
Confidence 55677999999999999999999999999999 9988644432 11 012222 2333333 33444443 3567
Q ss_pred EEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEE
Q 002405 522 ELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 522 ~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~ 570 (927)
.++.|+-+++..-+.+..+.....-+++.++|++++.++.|..|++|.-
T Consensus 615 kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 615 KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 8999977655443333333333345678899999999999999999964
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=207.16 Aligned_cols=277 Identities=12% Similarity=0.207 Sum_probs=210.5
Q ss_pred EEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCC
Q 002405 33 LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPS 111 (927)
Q Consensus 33 lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~ 111 (927)
+||+++ |.+|++|... ++. +.|+... ..+.+.++..+||+++||++... .||+||+.+++..
T Consensus 12 iLvsA~YDhTIRfWqa~-tG~----C~rTiqh--~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~--------- 74 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQAL-TGI----CSRTIQH--PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN--------- 74 (311)
T ss_pred EEEeccCcceeeeeehh-cCe----EEEEEec--CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------
Confidence 788886 8899999985 433 3333211 24667899999999999998765 5999999865431
Q ss_pred CccceeeeEEeecccccccc--cceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCC
Q 002405 112 GLFFIKISLVLNEQLPFAEK--GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (927)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 189 (927)
++.+ +.+. ...+..|..++..+++|+.||++++|+..... .+
T Consensus 75 --Pv~t----------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~q----------------------- 118 (311)
T KOG0315|consen 75 --PVAT----------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQ----------------------- 118 (311)
T ss_pred --ceeE----------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cc-----------------------
Confidence 1111 1121 22344678899999999999999997654311 10
Q ss_pred CccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce----ecCCCCeE-EEEE
Q 002405 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAV-CASI 264 (927)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~----~~~h~~~v-~v~~ 264 (927)
..+.+.++|+++. +.|+..-++++-.++.+++||+....+ ......++ ++++
T Consensus 119 -------------R~~~~~spVn~vv----------lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 119 -------------RNYQHNSPVNTVV----------LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred -------------hhccCCCCcceEE----------ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 1234456666654 577877888888889999999876422 13444567 9999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCC-----cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 265 APEQQILAVGTRRGVVELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 265 sp~~~~la~g~~Dg~V~vwd~~~~~-----~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
.|||+.++.+..-|+..+|++-... .++.+++. |.+-+..+.+|||+++||+++.|.+++||+..+-
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--------ccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 9999999999999999999986521 23445555 9999999999999999999999999999999887
Q ss_pred -eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEE
Q 002405 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 398 (927)
Q Consensus 340 -~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~ 398 (927)
++..++++| ...+..++||.++ +++++|+ +.++|++..++.++...+|-...++
T Consensus 248 ~kle~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 248 FKLELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred eeeEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 666678887 8999999999999 9999887 8999999999988888887655443
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=1.1e-24 Score=227.45 Aligned_cols=317 Identities=15% Similarity=0.209 Sum_probs=223.7
Q ss_pred CceEEEEEecCe-EEEEE-ccCeEEEeecCCcee---E---EEEEee-ChHhhhhcccccEEEEcCCccEEEEEecCcEE
Q 002405 21 SQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKV---R---LGKYKR-DSESVQREGENLQAVWSPDTKLIAVVTSSLYL 91 (927)
Q Consensus 21 ~~~iv~fs~dg~-lla~~-~~~~v~IW~~~~~~~---~---l~~~~r-~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l 91 (927)
+.-+-+.+|-.. ++|++ ++.+.+||+.....- . +....| ...+......+++++|+.||..||+|+.+|.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 344456677755 88887 477999999852100 0 000110 11122233567899999999999999999999
Q ss_pred EEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc--CCeEEEEecCCcEEEEecCCccccceee
Q 002405 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (927)
Q Consensus 92 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~v~~~dg~i~~~~w~~~~~~~~~~ 169 (927)
|||+... ..... +..+.++|.++-.+ +.+|+.++.||++.+ |+.......+.
T Consensus 260 riw~~~G-~l~~t-----------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q~ 313 (524)
T KOG0273|consen 260 RIWNKDG-NLIST-----------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQQ 313 (524)
T ss_pred EEEecCc-hhhhh-----------------------hhccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEEe
Confidence 9999752 21111 23344566666544 567999999999876 55433222210
Q ss_pred cccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecc
Q 002405 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (927)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~ 249 (927)
...+..+..+++|-.. ..|+.-++||.+.++.......
T Consensus 314 ----------------------------------f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P------- 351 (524)
T KOG0273|consen 314 ----------------------------------FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRP------- 351 (524)
T ss_pred ----------------------------------eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCc-------
Confidence 0011112233444211 2234456677766654432211
Q ss_pred cceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC---------C
Q 002405 250 IDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---------N 319 (927)
Q Consensus 250 ~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd---------g 319 (927)
...+.||.+.| ++.|+|.|.+||+++.|+|++||++.. ....+.+.. |+..|..+.|||+ |
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~--------Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA--------HSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh--------hccceeeEeecCCCCccCCCcCC
Confidence 12247899999 999999999999999999999999887 677888888 9999999999995 4
Q ss_pred CEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE
Q 002405 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV 396 (927)
Q Consensus 320 ~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v 396 (927)
..+|+++.|++|++||+..+.++++|..| ..+|.+++|+|++ .++++|+ .+.+|+...++++....+ .+.|
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~I 496 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGI 496 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCC----cEEEecCCCCeeEeccccchheeEeecC-CCeE
Confidence 68999999999999999999999999888 8999999999999 9999998 889999999999998876 4566
Q ss_pred EEEec---cceeeecccCCCeeeeeee
Q 002405 397 LIFSF---GKCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 397 ~~~~~---~~~~~s~s~d~~~~~w~~~ 420 (927)
..+.+ |..+...-.|+.+.+-+++
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 44444 6666666677777766653
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=7.3e-24 Score=215.08 Aligned_cols=315 Identities=13% Similarity=0.137 Sum_probs=240.6
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
+...|+++|+.++.|+++ |+...||+.. .+..+..+. .++..++++.||.||.+||+|.-+|.|+||+..++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~-~ge~~~elt------gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDIS-TGEFAGELT------GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEcc-CCcceeEec------CCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 455688899899999984 8899999996 555555543 24566789999999999999999999999998643
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
..+ +..+.+
T Consensus 139 ~~~------------------------------------------------------~~~~~e----------------- 147 (399)
T KOG0296|consen 139 GEQ------------------------------------------------------WKLDQE----------------- 147 (399)
T ss_pred ceE------------------------------------------------------EEeecc-----------------
Confidence 210 000000
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc-c--eecCC
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-D--KELGS 256 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~-~--~~~~h 256 (927)
+.+|+| +...|-+.+++.|+.|+.+..|...+. . ...||
T Consensus 148 -------------------------------~~dieW-------l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 148 -------------------------------VEDIEW-------LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred -------------------------------cCceEE-------EEecccccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 001111 223566677777777777777877652 2 23789
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
+..+ |=.|.|+|+.+++|..||+|++|+..+ +.++.++... ..++-.++.++.+|..+.+|+.++.+.+-+
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~-------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQA-------EGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEeccc-------ccCcCCccccccccceeEeccCCccEEEEc
Confidence 9988 999999999999999999999999998 7777777652 345678999999999999999999999999
Q ss_pred ccCCeeEEEecc-------ccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec--cc
Q 002405 336 VSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GK 403 (927)
Q Consensus 336 ~~~~~~~~~l~~-------~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~ 403 (927)
..+++.+....+ .....+.++.+.|.. ......+.|+ ++.+||....++-.. -.|...|..+.| .+
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i~iyD~a~~~~R~~-c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTIAIYDLAASTLRHI-CEHEDGVTKLKWLNTD 339 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceEEEEecccchhhee-ccCCCceEEEEEcCcc
Confidence 888887776653 113344555555443 1225556665 999999887665444 357788988888 47
Q ss_pred eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 404 ~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
++++++.++.++.||.++|.. ...|.||+.+|...+++|++++++++|.|++. +|++.
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l--------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQL--------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccccce--------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999988775 67899999999999999999999999999999 88763
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=225.01 Aligned_cols=271 Identities=14% Similarity=0.192 Sum_probs=220.8
Q ss_pred ceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEE
Q 002405 133 LSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (927)
Q Consensus 133 ~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 212 (927)
..|.|+.-|.+.++.|..|.+|.+|+-+ ... ....+.+|.+.|.
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n--~~~----------------------------------c~~~L~GHtGSVL 241 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKN--SLE----------------------------------CLKILTGHTGSVL 241 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccc--cHH----------------------------------HHHhhhcCCCcEE
Confidence 3678999999999999999999985433 211 1133578899999
Q ss_pred EEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC
Q 002405 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (927)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~ 288 (927)
++.| |.+.+++|+.|.++++||..+++.+ .+|.++| .+.|+. .++++++.|.+++|||+..+
T Consensus 242 CLqy------------d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 242 CLQY------------DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred eeec------------cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence 9887 5679999999999999999998765 6899999 999875 47999999999999999863
Q ss_pred C--cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCc
Q 002405 289 A--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (927)
Q Consensus 289 ~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~ 366 (927)
. .+.+.+.+ |...|+.+.|+ .+++++++.|+++++|++.+++.+.++.+| ...+.++.+. +
T Consensus 308 s~it~rrVLvG--------HrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQYr--~---- 370 (499)
T KOG0281|consen 308 TDITLRRVLVG--------HRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQYR--D---- 370 (499)
T ss_pred hHHHHHHHHhh--------hhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcc-cccceehhcc--C----
Confidence 2 23456667 99999999996 569999999999999999999999999998 6667666552 2
Q ss_pred ccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
.+++||+ ++++|+.+.|.++..++||.+-|.++.| .+.+++|+.||++++|++..+.+.-... ..
T Consensus 371 rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~-----------~~ 439 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPA-----------ST 439 (499)
T ss_pred eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccc-----------cc
Confidence 6788887 9999999999999999999999999999 8899999999999999998776510000 00
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
-+..+...|.+.|..+.| |...+++++.|.++ +||...+
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 012345678889988888 56788899999999 9998665
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=222.48 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=213.8
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEE
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~ 281 (927)
++..+|+.+- +.|+-.+.++++.|.+++.||..+++.. .||.+++ .++|+..|+++|+++.|-.++
T Consensus 106 g~r~~vt~v~----------~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 106 GHRSSVTRVI----------FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred ccccceeeee----------eccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 3455565554 4677777888888999999998887653 7999999 999999999999999999999
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCC
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~ 361 (927)
+||.++..++++.+.+ |.-.|.+++|-|-|.++++++.|.+|+.|++.++.++.++.+| ...|..++.+.|
T Consensus 176 LWd~~~~~~c~ks~~g--------h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~D 246 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIG--------HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQD 246 (406)
T ss_pred heeHHHHHHHHHHhcC--------cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecCC
Confidence 9999874567777777 9999999999999999999999999999999999999999999 779999999999
Q ss_pred CCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-----------c-----ceeeecccCCCeeeeeee
Q 002405 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-----------~-----~~~~s~s~d~~~~~w~~~ 420 (927)
+ ..+++++ ++.+|..++.++...+.+|.-.+ +++.+ + ..+.+++.|+++++|++.
T Consensus 247 G----ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 247 G----TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred e----eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence 8 8888887 89999999987777777766554 22221 2 478899999999999998
Q ss_pred ecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEE
Q 002405 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 499 (927)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v 499 (927)
.+.. ..++.+|...|+.++|+|-|+||+++..|+++ +||+++++...--+ .+|. .+
T Consensus 323 tg~c--------------------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~h--fv 379 (406)
T KOG0295|consen 323 TGMC--------------------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEH--FV 379 (406)
T ss_pred CCeE--------------------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcc--ee
Confidence 7754 56788999999999999999999999999999 99999987543222 3443 34
Q ss_pred EEEEee--CCEEEEE
Q 002405 500 KGLLWL--GKIIVVC 512 (927)
Q Consensus 500 ~~~~W~--~~~li~~ 512 (927)
+.+... ..++++|
T Consensus 380 t~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 380 TSLDFHKTAPYVVTG 394 (406)
T ss_pred EEEecCCCCceEEec
Confidence 444444 3455555
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=244.27 Aligned_cols=267 Identities=17% Similarity=0.251 Sum_probs=221.4
Q ss_pred EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 137 ~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
.|++++..++.++.++.+.++.+..... ... ..+.+|...|.++.|
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~---------------------------------~~l~~h~~~v~~~~f 211 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-NLL---------------------------------RELSGHTRGVSDVAF 211 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-hhh---------------------------------ccccccccceeeeEE
Confidence 5678888888888999998876532221 110 112456677777665
Q ss_pred ccCcceEEEEEeCCcEEEEeeecCccceeeeccc-c---eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcc
Q 002405 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-D---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (927)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~-~---~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~ 291 (927)
+|||+++++++.|+++++|+.... . .+.||...| +++|+|+++++++|+.|++||+||+.+ +++
T Consensus 212 ----------s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~ 280 (456)
T KOG0266|consen 212 ----------SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GEC 280 (456)
T ss_pred ----------CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeE
Confidence 899999999999999999999433 2 237999999 999999999999999999999999998 899
Q ss_pred eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe--eEEEecccccc-ceecceecCCCCCCccc
Q 002405 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYEP 368 (927)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~-~v~s~~~sp~~~~~~~~ 368 (927)
+.++++ |.++|++++|++||+.|++++.|+.++|||+.++. +...+.++... .++++.|+|++ .+
T Consensus 281 ~~~l~~--------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~~ 348 (456)
T KOG0266|consen 281 VRKLKG--------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----KY 348 (456)
T ss_pred EEeeec--------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----cE
Confidence 999999 99999999999999999999999999999999988 56777776344 69999999999 77
Q ss_pred ccccc---eeEEEcCCCceEEEEEcCCcceE---EEEe--c-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceE
Q 002405 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (927)
Q Consensus 369 l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~~~~--~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (927)
++++. ++++|+...+.......+|...+ .... . ++.+++|+.|+.+.+|+...+..
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--------------- 413 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--------------- 413 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------
Confidence 77766 89999999999988888887653 2222 1 88999999999999999876443
Q ss_pred EEeecCcccccC-CCceEEEEEccCCCEEEEEe--CCceE-EEEc
Q 002405 440 LHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDI 480 (927)
Q Consensus 440 ~~~~~~~~~~~~-~~~I~~va~spdG~~la~ag--~dg~i-~wd~ 480 (927)
...+.+| ...+..++++|...++++++ .|+.+ +|..
T Consensus 414 -----~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 414 -----LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -----hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 5667788 88999999999999999999 68888 8864
No 35
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.5e-22 Score=218.08 Aligned_cols=323 Identities=14% Similarity=0.105 Sum_probs=215.7
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee------cCCCCeE-EEEEcC------------CCcEEEEEecCCeEEEEe
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAP------------EQQILAVGTRRGVVELYD 284 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~------~~h~~~v-~v~~sp------------~~~~la~g~~Dg~V~vwd 284 (927)
+.|++....+.+-.+|..+.+||.....+. .-|...+ .+..-| .+ -+.+++.|||||+|+
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEee
Confidence 445556666777777788888887765432 3455555 443333 22 488999999999999
Q ss_pred ccCCCcceEEEeee-------cCC----------------------CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 285 LAESASLIRTVSLY-------DWG----------------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 285 ~~~~~~~~~~l~~~-------~~~----------------------~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
++. +..-.+++.+ ... -..+..-.+.+++.||||++||+|..-|.++|++
T Consensus 409 l~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 409 LAF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ccc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 975 2111111000 000 0112345699999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcC-CCceEEEEEcCCcceEEEEec---c--ceee
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE-YGYRLYAIEEGSSERVLIFSF---G--KCCL 406 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~-~~~~l~~~~~~~~~~v~~~~~---~--~~~~ 406 (927)
+..-+.++.++.| .+.|.++.|+... ....++++++ -+.++|. ..+.+..++.+|...|.++.| + ..++
T Consensus 488 Lq~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 488 LQELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred ehhhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 9988888888888 8999999998543 2336788888 5667886 467888899999999988888 3 5678
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
+++.|..+.........+..++.++ +-......+..+++.|+-++++++++|..| +||++++|-
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~---------------t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRH---------------TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eccCchhhheehhccccCceecccc---------------ccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 8888888765443333322111111 111123457889999999999999999999 999999885
Q ss_pred -EeeCC-ccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEEecCCccEEEEccCCEEEEEEc
Q 002405 486 -RVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561 (927)
Q Consensus 486 -~~f~~-~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 561 (927)
|.|+. ..+|.+..-..+.-.+.|++..|.. ..|-+|+.. ..-.....|.+.+.+ +-+..+=.+|+.++.
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISVSG 703 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchheee--eeecccchhheeecC
Confidence 46743 3344544333445556677766543 356666553 222223344443332 445555567888999
Q ss_pred CCeEEEEEEEE
Q 002405 562 PFDVHIFHVKL 572 (927)
Q Consensus 562 d~~i~l~~~~~ 572 (927)
||.|-+|++..
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999998853
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=4.3e-25 Score=221.46 Aligned_cols=254 Identities=11% Similarity=0.168 Sum_probs=208.3
Q ss_pred CCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
|...+++|..|.++++||....++. .||++.| |+.+..+ .+++|+.|.||+|||+++ ++++.++-.
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~t-ge~l~tlih------- 275 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNT-GEPLNTLIH------- 275 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccC-CchhhHHhh-------
Confidence 5566889999999999998765543 7999999 9987554 999999999999999998 889988888
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe---eEEEeccccccceecceecCCCCCCcccccccc---eeEEE
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W 378 (927)
|...|..+.|+. .++++++.|++++|||+.... +.+.|.|| ...|+.+.|+. .+++|++ ++++|
T Consensus 276 -HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~------kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 276 -HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDD------KYIVSASGDRTIKVW 345 (499)
T ss_pred -hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeecccc------ceEEEecCCceEEEE
Confidence 999999999984 589999999999999996643 44567788 88899998853 4565555 99999
Q ss_pred cCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE
Q 002405 379 DEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (927)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (927)
+..+.+.+.++.+|..+|.++.+ ++.+++||.|.++++|++..|.. ...+.||..-|++
T Consensus 346 ~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLeGHEeLvRc 405 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEELVRC 405 (499)
T ss_pred eccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHhchHHhhhh
Confidence 99999999999999999999999 99999999999999999887765 6778899999999
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcEEee-C-----CccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCC
Q 002405 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-G-----DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 458 va~spdG~~la~ag~dg~i-~wd~~s~~w~~f-~-----~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
+.| |.+.+++|+.||.+ +||++++.=... . ....|+...|.++.+..--+|++ +-+.++.+|++.
T Consensus 406 iRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddtILiWdFl 477 (499)
T KOG0281|consen 406 IRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDTILIWDFL 477 (499)
T ss_pred eee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCeEEEEEcC
Confidence 999 57889999999999 999987642100 0 01123334466677766666665 345789999885
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=4.8e-24 Score=215.15 Aligned_cols=275 Identities=11% Similarity=0.149 Sum_probs=218.6
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.||.+.| |+++.|-.+++|+|+.|++++|||+.+ +.+..++.+ |...|..+++|+---+|+++++|+.|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltG--------hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTG--------HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecc--------hhheeeeeeecccCceEEEecCCCeeE
Confidence 7999999 999999999999999999999999998 888888888 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEE--ec-cceee
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCL 406 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~ 406 (927)
.||+..++.++...|| .+.|.+++.+|.. +.+++|+ ++++||..+..-+.++.||...|..+ .+ ..+++
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999898 9999999999998 8888887 89999999999999999999988433 33 56889
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEE
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~ 486 (927)
|+|.|+++++||+..++. ..++..|+..|++++.+|....+|+||.|..-.|++-.|..
T Consensus 294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF- 352 (460)
T ss_pred EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence 999999999999998876 34567889999999999999999999999977999877652
Q ss_pred eeCCccceeeeEEEEEEee-CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCc-----cEEEEc---cCCEEE
Q 002405 487 VFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK-----PIVMDV---YEDYIL 557 (927)
Q Consensus 487 ~f~~~~~e~~~~v~~~~W~-~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~-----~~~~~~---~~~~l~ 557 (927)
..|....+ -.+..+.-+ .+++++| .....+-+|+...-.+-+.+....-|+. -+..++ .+..|+
T Consensus 353 -~~nlsgh~-~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 353 -LQNLSGHN-AIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred -hhcccccc-ceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 23322222 223355554 4566665 2335677776642222222222222221 223333 445699
Q ss_pred EEEcCCeEEEEEE
Q 002405 558 VTYRPFDVHIFHV 570 (927)
Q Consensus 558 v~~~d~~i~l~~~ 570 (927)
++-+|.+|++|+-
T Consensus 426 t~eadKtIk~~ke 438 (460)
T KOG0285|consen 426 TGEADKTIKMYKE 438 (460)
T ss_pred eccCCcceEEEec
Confidence 9899999999854
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=238.54 Aligned_cols=267 Identities=15% Similarity=0.220 Sum_probs=212.9
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccc-----eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~-----~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
+.+++||+.+++++.++.+++|+..... ...+|...| +++|+|+++++++|+.|+++|+||+...+..++++++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 5679999999999999999999884333 126899999 9999999999999999999999999554688899999
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---e
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (927)
|+..|++++|+|+|+.+++|+.|++|+|||+.++++...+.+| .+.|++++|++++ ..+++++ .
T Consensus 245 --------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d~~ 311 (456)
T KOG0266|consen 245 --------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYDGT 311 (456)
T ss_pred --------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCCcc
Confidence 9999999999999999999999999999999999999999999 7899999999999 8888777 8
Q ss_pred eEEEcCCCce--EEEEEcCCcce--E--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcc
Q 002405 375 MMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (927)
Q Consensus 375 ~~~W~~~~~~--l~~~~~~~~~~--v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (927)
+++||..+++ +.....++... + +.+++ ++++++++.|+++++|++..+.. +..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~~~ 371 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------VGT 371 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------eee
Confidence 9999999998 45566555444 5 55555 99999999999999999876654 556
Q ss_pred cccCCC---ceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeC--CEEEEEEeecCCCeE
Q 002405 448 YISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTY 521 (927)
Q Consensus 448 ~~~~~~---~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~--~~li~~~~~~~~~~~ 521 (927)
+.+|.. .+.+...+++|+++.+|+.|+.+ +||..++.-..-. +.+. .-.+..+.|.. +.++.+. ...+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~-~~~~~~~~~~~~~~~~~s~s---~~~d~ 446 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHS-KAAVSDLSSHPTENLIASSS---FEGDG 446 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCC-CCceeccccCCCcCeeeecC---cCCCc
Confidence 666655 34555668899999999999999 9999875422111 1111 22355677753 3333331 13456
Q ss_pred EEEEeeC
Q 002405 522 ELLFYPR 528 (927)
Q Consensus 522 ~l~l~~~ 528 (927)
.+++|..
T Consensus 447 ~~~~w~~ 453 (456)
T KOG0266|consen 447 LIRLWKY 453 (456)
T ss_pred eEEEecC
Confidence 7788855
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=210.94 Aligned_cols=237 Identities=14% Similarity=0.151 Sum_probs=204.0
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc-ce---ecCCCCeE-EEEEcCCCcEEEEEecCC
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~-~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg 278 (927)
+.+|...+.++.| +..|+++++++.|-.+++||..+. ++ ..||...| ++.|-|.|.++++++.|.
T Consensus 146 LrGHt~sv~di~~----------~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 146 LRGHTDSVFDISF----------DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred hhccccceeEEEE----------ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc
Confidence 4566666777765 678899999999999999998763 22 27899999 999999999999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceeccee
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
+|+.|++++ +-++.++.+ |...|..++-+.||..+|+++.|.++++|-+.++.+...+++| ...|.+++|
T Consensus 216 tik~We~~t-g~cv~t~~~--------h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~w 285 (406)
T KOG0295|consen 216 TIKAWECDT-GYCVKTFPG--------HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAW 285 (406)
T ss_pred ceeEEeccc-ceeEEeccC--------chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEe
Confidence 999999998 889999999 9999999999999999999999999999999999888888888 677888877
Q ss_pred cCCCC----------C-Ccccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeee
Q 002405 359 KPNQD----------C-KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 359 sp~~~----------~-~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~ 421 (927)
-|... . ..+.+.+++ ++++|+..++.++.++.+|.+.| ++|++ |++++|...|+++++|++..
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 66431 0 114566666 99999999999999999999999 66666 99999999999999999876
Q ss_pred cCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
... -..+..|...++++.|..+-.|+++|+-|..+ +|..
T Consensus 366 ~~c--------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQC--------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cee--------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 554 34455788889999999999999999999999 9864
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=3.6e-23 Score=208.81 Aligned_cols=274 Identities=13% Similarity=0.191 Sum_probs=221.9
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
.+|.+-|++++ +.|-...+++++.|+++++||+.+++.. .||-..| .+++|+...++.+++.|++|
T Consensus 148 ~gHlgWVr~va----------vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 148 SGHLGWVRSVA----------VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred hhccceEEEEe----------eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 35566666665 4677788999999999999999988654 7899999 99999999999999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
+.||+.. .+.++...+ |-..|.|++..|.-..|++|+.|.+++|||+.+...+.++.|| ...|.++.+.|
T Consensus 218 KCwDLe~-nkvIR~YhG--------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~ 287 (460)
T KOG0285|consen 218 KCWDLEY-NKVIRHYHG--------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQP 287 (460)
T ss_pred EEEechh-hhhHHHhcc--------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeec
Confidence 9999998 888888888 9999999999999999999999999999999999999999999 89999999998
Q ss_pred CCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
.+ ..+.+|+ ++++||...++-..++..|...+.++.. ...++|+|.|. ++.|++..+.-
T Consensus 288 ~d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f---------- 352 (460)
T KOG0285|consen 288 TD----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF---------- 352 (460)
T ss_pred CC----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch----------
Confidence 87 6777887 9999999999999999888877755544 45667888775 77888776654
Q ss_pred CcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeC-CccceeeeE----EEEEEee--C
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQ----SKGLLWL--G 506 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~-~~~~e~~~~----v~~~~W~--~ 506 (927)
.+.+.+|+..|.+++.+.|| ++++||.+|.+ .||..+|-...+. ...+..++. +...++. +
T Consensus 353 ----------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 353 ----------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred ----------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 45578999999999999887 56689999999 9999888644332 122222222 3334443 4
Q ss_pred CEEEEEEeecCCCeEEEEEeeCC
Q 002405 507 KIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 507 ~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
.-||.| ..+..|++|..+
T Consensus 422 ~rlit~-----eadKtIk~~keD 439 (460)
T KOG0285|consen 422 SRLITG-----EADKTIKMYKED 439 (460)
T ss_pred ceEEec-----cCCcceEEEecc
Confidence 566666 355678888774
No 41
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=195.45 Aligned_cols=283 Identities=14% Similarity=0.199 Sum_probs=212.6
Q ss_pred CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceE--EEeeccCCeEEEEecCCcEE
Q 002405 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLY 155 (927)
Q Consensus 78 Dg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~l~v~~~dg~i~ 155 (927)
+.-.||+++.|-+||+|+..++.....+. ..+..| .++.+++..|+++ .+..|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiq-----------------------h~dsqVNrLeiTpdk~~LAaa-~~qhvR 64 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQ-----------------------HPDSQVNRLEITPDKKDLAAA-GNQHVR 64 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEe-----------------------cCccceeeEEEcCCcchhhhc-cCCeeE
Confidence 34589999999999999998665322221 111122 3556666655554 467888
Q ss_pred EEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEE
Q 002405 156 SISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC 235 (927)
Q Consensus 156 ~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~ 235 (927)
+++.+.....+. ....++...|+.+ .|.-||+...+
T Consensus 65 lyD~~S~np~Pv----------------------------------~t~e~h~kNVtaV----------gF~~dgrWMyT 100 (311)
T KOG0315|consen 65 LYDLNSNNPNPV----------------------------------ATFEGHTKNVTAV----------GFQCDGRWMYT 100 (311)
T ss_pred EEEccCCCCCce----------------------------------eEEeccCCceEEE----------EEeecCeEEEe
Confidence 877654332211 1123344455554 45889999999
Q ss_pred eeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeE
Q 002405 236 SVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (927)
Q Consensus 236 ~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~ 312 (927)
+++|+++++||.....+. ..|..+| ++..+|+..-|.+|.++|.|++||+.. ..+.+.+-. +..-+|.+
T Consensus 101 gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~-~~c~~~liP-------e~~~~i~s 172 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE-NSCTHELIP-------EDDTSIQS 172 (311)
T ss_pred cCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC-CccccccCC-------CCCcceee
Confidence 999999999999875433 5688899 999999999999999999999999986 444444332 24568999
Q ss_pred EEECCCCCEEEEEEcCCcEEEEEccCCe------eEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCc
Q 002405 313 IAWTPDNSAFAVGWKSRGLTVWSVSGCR------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY 383 (927)
Q Consensus 313 l~~spdg~~Lasg~~Dg~v~vW~~~~~~------~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~ 383 (927)
++..|||++|+++...|...+|++.+.. ++..++.| .+-+..+.+||++ .++++++ ++++|+.++.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~C~lSPd~----k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILRCLLSPDV----KYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEEEEECCCC----cEEEeecCCceEEEEecCCc
Confidence 9999999999999999999999996543 34456666 7778999999999 8888777 9999999988
Q ss_pred -eEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEE
Q 002405 384 -RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (927)
Q Consensus 384 -~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va 459 (927)
++-..+++|...++.-.| +++++|++.|++.++|++..++. ...|.+|-.+..+++
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~--------------------v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE--------------------VRQYQGHHKAAVCVA 307 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce--------------------eeecCCcccccEEEE
Confidence 777788899988965555 89999999999999999887765 456677776666666
Q ss_pred Ec
Q 002405 460 AS 461 (927)
Q Consensus 460 ~s 461 (927)
..
T Consensus 308 ln 309 (311)
T KOG0315|consen 308 LN 309 (311)
T ss_pred ee
Confidence 53
No 42
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-22 Score=207.25 Aligned_cols=268 Identities=17% Similarity=0.188 Sum_probs=207.5
Q ss_pred eEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEE
Q 002405 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (927)
Q Consensus 134 ~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (927)
-|.++...++.|+.|+.||.+++|+..|+... ...+|.++|.+
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~-------------------------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDLKGKSIK-------------------------------------TIVGHTGPIKS 149 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEecCCceEE-------------------------------------EEecCCcceee
Confidence 45555555889999999999999765543321 12456677776
Q ss_pred EEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEec
Q 002405 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (927)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~ 285 (927)
+.+. .-.+....+++++.|.++++|....++.. .||..+| +++.+++|..+++|+.|.++++|+.
T Consensus 150 v~~v-------~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~ 222 (423)
T KOG0313|consen 150 VAWV-------IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV 222 (423)
T ss_pred eEEE-------ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc
Confidence 6551 11222237889999999999987665432 5999999 9999999999999999999999994
Q ss_pred cCCC------------------------cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee
Q 002405 286 AESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (927)
Q Consensus 286 ~~~~------------------------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~ 341 (927)
.... .++-++. +|+++|.+|.|++ ...+.+++.|.+|++||+.++.+
T Consensus 223 ~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 223 ETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred CCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEeecccc
Confidence 3210 1222333 5999999999998 67888999999999999999998
Q ss_pred EEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCc--e-EEEEEcCCcceEEEE--ec--cceeeecccC
Q 002405 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--R-LYAIEEGSSERVLIF--SF--GKCCLNRGVS 411 (927)
Q Consensus 342 ~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--~-l~~~~~~~~~~v~~~--~~--~~~~~s~s~d 411 (927)
..++.+ ...++++.++|.. ..+++|+ .+++|||+++ . .-..+.+|.+-|-.+ ++ -..+++++.|
T Consensus 294 ~~~~~~--~ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 294 KSTLTT--NKSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred eeeeec--CcceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 888876 4678999999987 8888887 7899999764 2 344567899888444 44 4578999999
Q ss_pred CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
+++++||++..... .....+|++.|.++.|+ +|..+++||.|..+ ++.-
T Consensus 368 ~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 99999999877652 24566899999999998 78899999999999 7753
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=3e-22 Score=246.72 Aligned_cols=229 Identities=12% Similarity=0.141 Sum_probs=175.3
Q ss_pred eCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
.++.++++++.|+++++||..+.+.. .+|.+.| +++|+| ++.+|++|+.||+|++||+.+ +..+..+..
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~----- 616 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT----- 616 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-----
Confidence 35678888899999999998765432 6899999 999997 789999999999999999987 666666654
Q ss_pred CCCCCCCeeEEEEC-CCCCEEEEEEcCCcEEEEEccCCe-eEEEeccccccceecceecCCCCCCcccccccc---eeEE
Q 002405 303 SMDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (927)
Q Consensus 303 ~~~h~~~V~~l~~s-pdg~~Lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~ 377 (927)
...|.+++|+ ++|..||+|+.||.|++||+.... ...++.+| ...|+++.|. ++ ..+++++ ++++
T Consensus 617 ----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~----~~lvs~s~D~~iki 686 (793)
T PLN00181 617 ----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DS----STLVSSSTDNTLKL 686 (793)
T ss_pred ----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CC----CEEEEEECCCEEEE
Confidence 3679999995 579999999999999999997654 46677777 7789999996 33 5566665 8999
Q ss_pred EcCCC------ceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecC-cc
Q 002405 378 WDEYG------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VS 447 (927)
Q Consensus 378 W~~~~------~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~ 447 (927)
|+... ...+..+.+|...+ +.+++ ++.+++|+.|+++++|+...... +..+..... ..++ ..
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-~~s~~~~~~-------~~~~~~~ 758 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-VLSYKFKTI-------DPVSGLE 758 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-eEEEecccC-------Ccccccc
Confidence 99863 35677788888766 45555 88999999999999999654321 111100000 0001 11
Q ss_pred cccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 448 ~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
...|...|++++|+|+|.+|++|+.+|.+ +|++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 23466789999999999999999999999 9986
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=8.4e-24 Score=203.79 Aligned_cols=236 Identities=18% Similarity=0.216 Sum_probs=196.7
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
+.+|++.|.+.. +..|....++++.|.+.++||..++..+ ..|...| .++|+.|..+|.+|+.+..+
T Consensus 55 feghkgavw~~~----------l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWSAT----------LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceeeee----------cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHh
Confidence 356777776543 4566777888899999999999887655 6788999 99999999999999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
||||++.+......+.+ |++.|..+-|....+.+.++.+|++||+||..++..+++|.. .+.|+++..++
T Consensus 125 rvfdln~p~App~E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~ 194 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQ 194 (334)
T ss_pred hhhhccCCCCCchhhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeecc
Confidence 99999875555556666 999999999999888999999999999999999999999986 46799999999
Q ss_pred CCCCCcccc--cccceeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCC
Q 002405 361 NQDCKYEPL--MSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (927)
Q Consensus 361 ~~~~~~~~l--~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (927)
++ +.+ +-|+++++|++.+..++...+- .-.| ..+.+ ...++.|+.|+.++.+|+.++.+
T Consensus 195 dG----~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE----------- 258 (334)
T KOG0278|consen 195 DG----RILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE----------- 258 (334)
T ss_pred CC----CEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCce-----------
Confidence 98 554 4456999999999988776543 2334 45555 45678899999999999888877
Q ss_pred cceEEEeecCccc-ccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 436 ELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 436 ~~~w~~~~~~~~~-~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
...+ .+|.+||-|+.|||||...|+|++||++ +|.+..++
T Consensus 259 ---------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 259 ---------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 2334 7899999999999999999999999999 99986653
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.3e-23 Score=209.41 Aligned_cols=278 Identities=15% Similarity=0.202 Sum_probs=207.6
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
+...+.||++|++||+++ |.+..||.+. ....+. ++.+. ..+..++..+.||||.++|++++.+..+++||+.++
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~k-l~~tl--vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVV-YDVHFK-LKKTL--VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEe-cCccee-eeeee--ecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 567799999999999995 7899999985 433322 22222 235678889999999999999999999999999877
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
.....++... +....-++..||+..+++|+.|+.+..|+.+++.....+
T Consensus 302 d~~~~y~~~~--------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~----------- 350 (519)
T KOG0293|consen 302 DLRHLYPSGL--------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE----------- 350 (519)
T ss_pred hhhhhcccCc--------------------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc-----------
Confidence 6543221100 011122466889999999999999998877776543321
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCC
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS 256 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h 256 (927)
.-....|.++ ++++||+.+++...|..+++.+....... ..|
T Consensus 351 -------------------------gvr~~~v~dl----------ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~ 395 (519)
T KOG0293|consen 351 -------------------------GVRDPKVHDL----------AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE 395 (519)
T ss_pred -------------------------ccccceeEEE----------EEcCCCcEEEEEecccceeeechhhhhhhcccccc
Confidence 0111235444 46899999888888888888876543221 334
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCC--eeEEEECC-CCCEEEEEEcCCcEEE
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTP-DNSAFAVGWKSRGLTV 333 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~--V~~l~~sp-dg~~Lasg~~Dg~v~v 333 (927)
...++..+|.+++++.+--.+..+++||+++ ...+++..+ |+.. +..-+|-- |..++|+|++|+.|.|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~G--------hkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFG--------HKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhc--------ccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 4444999999999999999999999999996 777777777 6533 33345654 6689999999999999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCC
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (927)
|+..+++++..|.|| ...|++++++|..+ .+++|++ ++++|.+.
T Consensus 467 Whr~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEccCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence 999999999999999 78899999999863 5667766 78888765
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=2.9e-22 Score=198.72 Aligned_cols=271 Identities=13% Similarity=0.140 Sum_probs=206.7
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.||.+.| ++.|+|+|..+|+|+.|..|.+|++....+...++++ |++.|..+.|++||+.+++++.|++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCCEEEEecCCceEE
Confidence 7899999 9999999999999999999999998654566677777 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceee
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (927)
.||+.+|+....+++| .+-|+++.-+.-+ .+++.||+ ++++||.+..+.+.+... .-++.++.| +..+.
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence 9999999999999998 7788887733333 25667776 999999998877776643 456777777 67889
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC---
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--- 482 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s--- 482 (927)
+|+-|+.+++||+..++. ...+.||.++|+.++.||+|.++.+-+-|.++ +||++-
T Consensus 191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999987665 45677999999999999999999999999999 999852
Q ss_pred -Cc-EEeeCCccceeeeEEEEEEeeCC--EEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCcc-----EEEEccC
Q 002405 483 -KK-WRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKP-----IVMDVYE 553 (927)
Q Consensus 483 -~~-w~~f~~~~~e~~~~v~~~~W~~~--~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~ 553 (927)
.| .+.|....+..+...-...|..+ .+-++ ..+..+.+|+.. .....+.+|+.. +.+.|.+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag-----s~dr~vyvwd~~-----~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG-----SADRFVYVWDTT-----SRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccc-----cccceEEEeecc-----cccEEEEcCCcceeEEEeeecCCC
Confidence 23 34454333322222346778643 33333 233456677663 112234445432 2445666
Q ss_pred CEEEEEEcCCeEEE
Q 002405 554 DYILVTYRPFDVHI 567 (927)
Q Consensus 554 ~~l~v~~~d~~i~l 567 (927)
..|+.++.|.+|.+
T Consensus 321 ~iils~~sdk~i~l 334 (338)
T KOG0265|consen 321 PIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEeccCceeEe
Confidence 67777788877765
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7e-23 Score=210.30 Aligned_cols=223 Identities=15% Similarity=0.125 Sum_probs=178.9
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
+.+|||.+++++++.+..+++||..++... .+|...+ |++|.|||..+++|+.|+++..||++ +..+..+++.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W~gv 352 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNWEGV 352 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhccccc
Confidence 345899999999999888999999888665 4455777 99999999999999999999999997 4555556552
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---ee
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~ 375 (927)
....|.+++.++||+++.+...|..+++++............ ...+++...|.++ .+..... .+
T Consensus 353 -------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise--~~~its~~iS~d~----k~~LvnL~~qei 419 (519)
T KOG0293|consen 353 -------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE--EQPITSFSISKDG----KLALVNLQDQEI 419 (519)
T ss_pred -------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc--cCceeEEEEcCCC----cEEEEEcccCee
Confidence 345699999999999999999999999999977544433333 3578888898887 5544322 88
Q ss_pred EEEcCCCceEEEEEcCCcceEEE--Eec----cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc
Q 002405 376 MQWDEYGYRLYAIEEGSSERVLI--FSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (927)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~--~~~----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (927)
.+||.+..+++....||...-+. -.| .+.++|||.|+.+++|+...+.. ...+.
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--------------------l~~Ls 479 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--------------------LAVLS 479 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--------------------eEeec
Confidence 99999988887777888655432 233 35789999999999999776654 56788
Q ss_pred cCCCceEEEEEccC-CCEEEEEeCCceE-EEEcc
Q 002405 450 SQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 450 ~~~~~I~~va~spd-G~~la~ag~dg~i-~wd~~ 481 (927)
||...|++|+++|. -.++|+||.||++ +|...
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999995 6789999999999 99764
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=8.8e-22 Score=242.62 Aligned_cols=272 Identities=16% Similarity=0.211 Sum_probs=204.5
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeeccc----c------eecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCC
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI----D------KELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~----~------~~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
..+.+++||+++++++.|+++++|+.... . ....+...+ +++|+| ++.+||+|+.||+|++||+.+ +
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~ 565 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-S 565 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-C
Confidence 44566899999999999999999986421 0 001233456 899987 478999999999999999987 6
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC-CCCCCcc
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYE 367 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp-~~~~~~~ 367 (927)
..+..+.+ |.+.|++++|+| ||.+|++|+.||+|++||+.++....++..+ ..+.++.|++ ++ .
T Consensus 566 ~~~~~~~~--------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g----~ 631 (793)
T PLN00181 566 QLVTEMKE--------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG----R 631 (793)
T ss_pred eEEEEecC--------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----C
Confidence 77777777 999999999997 8999999999999999999988888888754 4688888854 45 6
Q ss_pred cccccc---eeEEEcCCCce-EEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEE
Q 002405 368 PLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (927)
Q Consensus 368 ~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (927)
.+++|+ ++.+|+....+ .+....+|...|..+.| +..+++++.|+++++|++..+.... .+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~~-- 698 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------NE-- 698 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------CC--
Confidence 677776 89999997765 45667789888877766 7889999999999999986432100 00
Q ss_pred eecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--E-EeeCCcc-------ceeeeEEEEEEeeC--CE
Q 002405 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W-RVFGDIT-------QEQKIQSKGLLWLG--KI 508 (927)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~--w-~~f~~~~-------~e~~~~v~~~~W~~--~~ 508 (927)
.....+.+|...+.+++|+|+|++||+|+.||.+ +|+..... | ..|.... .+..-.+..++|.+ ..
T Consensus 699 -~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 699 -TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred -cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 0134567899999999999999999999999999 99976542 1 1121111 11122467899964 46
Q ss_pred EEEEEeecCCCeEEEEEee
Q 002405 509 IVVCNYIDSSNTYELLFYP 527 (927)
Q Consensus 509 li~~~~~~~~~~~~l~l~~ 527 (927)
+++|+ .+..|++|.
T Consensus 778 lva~~-----~dG~I~i~~ 791 (793)
T PLN00181 778 LVAAN-----STGNIKILE 791 (793)
T ss_pred EEEec-----CCCcEEEEe
Confidence 66663 345677774
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=7e-22 Score=195.96 Aligned_cols=266 Identities=14% Similarity=0.120 Sum_probs=204.5
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc----ceecCCCCeE-EEEEcCCCcEEEEEecCC
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~----~~~~~h~~~v-~v~~sp~~~~la~g~~Dg 278 (927)
+.+|++.|..+.| +|||..+++++.|..+.+|+...- -...+|.++| .+.|++|++.|.+++.|.
T Consensus 43 l~gh~geI~~~~F----------~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 43 LPGHKGEIYTIKF----------HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred cCCCcceEEEEEE----------CCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 4567777777664 899999999999999999985322 1237999999 999999999999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEccCCeeEEEeccccccceecce
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~ 357 (927)
+|+.||+++ ++.++++++ |++-|+++.=+.-| .++.+|++||+++|||+.....+.++.. ...++++.
T Consensus 113 ~v~~wD~~t-G~~~rk~k~--------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~ 181 (338)
T KOG0265|consen 113 TVRGWDAET-GKRIRKHKG--------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVG 181 (338)
T ss_pred eEEEEeccc-ceeeehhcc--------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEE
Confidence 999999999 899999999 99999999844334 4778899999999999998888877754 35688889
Q ss_pred ecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEe--c-cceeeecccCCCeeeeeeeec--CCe-EEE
Q 002405 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYG--EDR-LLV 428 (927)
Q Consensus 358 ~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~s~d~~~~~w~~~~~--~~~-~~~ 428 (927)
|...+ ..+.+|. .+++|++.......++.||.+.|..++ . |..+.+-++|.++++|++..- .++ +.+
T Consensus 182 f~d~s----~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i 257 (338)
T KOG0265|consen 182 FKDTS----DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI 257 (338)
T ss_pred ecccc----cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE
Confidence 98776 5555665 789999999999999999999995444 4 889999999999999998742 222 333
Q ss_pred eecCCCCcceEEEeecCcccccCCC--ceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee
Q 002405 429 VQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (927)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~--~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~ 505 (927)
+.+.. |+- ....++|||+++++..|+.|..+ +||..+++...+ -..+...+.+..+.-.
T Consensus 258 f~g~~-----------------hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk-lpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 258 FQGHI-----------------HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK-LPGHYGSVNEVDFHPT 319 (338)
T ss_pred eecch-----------------hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE-cCCcceeEEEeeecCC
Confidence 33211 222 23457999999999999999999 999988764322 2334443333333334
Q ss_pred CCEEEEE
Q 002405 506 GKIIVVC 512 (927)
Q Consensus 506 ~~~li~~ 512 (927)
..+++.|
T Consensus 320 e~iils~ 326 (338)
T KOG0265|consen 320 EPIILSC 326 (338)
T ss_pred CcEEEEe
Confidence 5556555
No 50
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2e-21 Score=211.14 Aligned_cols=415 Identities=16% Similarity=0.128 Sum_probs=255.8
Q ss_pred CCceEEEEEecCeEEEEEccCeEEEeecCCcee------E-------EEEEe----------------------------
Q 002405 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV------R-------LGKYK---------------------------- 58 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~------~-------l~~~~---------------------------- 58 (927)
+...+++||.||.+|++++...|++|+.+ -+. + ++.+.
T Consensus 166 s~Vsav~fsEdgSYfvT~gnrHvk~wyl~-~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLv 244 (1080)
T KOG1408|consen 166 SVVSAVAFSEDGSYFVTSGNRHVKLWYLQ-IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLV 244 (1080)
T ss_pred eeEEEEEEccCCceeeeeeeeeEEEEEee-ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccccee
Confidence 45778999999999999999999999984 221 0 11110
Q ss_pred -----eChHhhhhccc--ccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceee---eEEeeccccc
Q 002405 59 -----RDSESVQREGE--NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKI---SLVLNEQLPF 128 (927)
Q Consensus 59 -----r~~~sl~~~G~--~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 128 (927)
|-.+...+-.. ..|++- ..++|++|.++|.|++|+.++-.-.-+.+.....+..+.++ +-.+++...-
T Consensus 245 EFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a 322 (1080)
T KOG1408|consen 245 EFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPA 322 (1080)
T ss_pred eechhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcc
Confidence 00000000000 113333 45799999999999999876321100111000000000100 0011111000
Q ss_pred ccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCC
Q 002405 129 AEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (927)
Q Consensus 129 ~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 208 (927)
.-.+.....|...++.+.+--.|-.+++|+.++....... ....-|.
T Consensus 323 ~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~---------------------------------~s~lyHS 369 (1080)
T KOG1408|consen 323 IFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC---------------------------------SSMLYHS 369 (1080)
T ss_pred cCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce---------------------------------eeeeecc
Confidence 0111122234445677777777889988776544322110 1122355
Q ss_pred ccEEEEEEcc-Cc-ceEEEEEeCCcEEEEeeecCccceeeeccc---cee------------------------------
Q 002405 209 SAIIWLELCL-PM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DKE------------------------------ 253 (927)
Q Consensus 209 ~~i~~i~~~~-~~-~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~---~~~------------------------------ 253 (927)
.+|.+++--| .. .--.+..|.|. +.+++.|++|++|+.... ...
T Consensus 370 ~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~f 448 (1080)
T KOG1408|consen 370 ACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIF 448 (1080)
T ss_pred ceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcc
Confidence 5666665433 11 11223335554 778888999999986531 000
Q ss_pred -------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC---CCCEE
Q 002405 254 -------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAF 322 (927)
Q Consensus 254 -------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---dg~~L 322 (927)
.+..-.+ |+++||+|+.||+|..-|++|||++.. .+....+.. |...|.|+.||. ..++|
T Consensus 449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eA--------HesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEA--------HESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheec--------ccceeEEEeecCchhhhHhh
Confidence 0112346 999999999999999999999999986 555566666 999999999995 35799
Q ss_pred EEEEcCCcEEEEEccCC-eeEEEeccccccceecceecCCCCCCcccccccc-eeEEEcCCC----ceEEEEEcC--Ccc
Q 002405 323 AVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYG----YRLYAIEEG--SSE 394 (927)
Q Consensus 323 asg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~----~~l~~~~~~--~~~ 394 (927)
|+|+.|+-|.|+|+... .++.++.+| .+.|+++.|-.++ -+.+++.+|. ..+.+.... +.++..... ...
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa~~g-ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFACNG-LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhccc-ccceeEEEEeecC-CceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 99999999999999543 577889888 8899999997765 2334444444 333444322 333332111 122
Q ss_pred eE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCC--Cc-----------------------ceEEEeecCc
Q 002405 395 RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--DE-----------------------LKILHLNLPV 446 (927)
Q Consensus 395 ~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~--~~-----------------------~~w~~~~~~~ 446 (927)
.+ +.+++ .+.+++++.|..++++++..+++...+-...+. +. ...-..++..
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 34 34444 788999999999999998877665444332221 10 0122345667
Q ss_pred ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 447 ~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
...||...|+.+.|++|-++|.+++.||-| +|.+..
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 788999999999999999999999999999 998754
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=186.90 Aligned_cols=265 Identities=19% Similarity=0.206 Sum_probs=205.5
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
..|.++| .+.||-+|++..+++.|.+||+|+... +.++++.++ |...|..++-+.|+..+|+|+.|+.+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsg--------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSG--------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecC--------CCceeeeccccccccccccCCCCceEE
Confidence 5678999 999999999999999999999999987 889999999 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC--ceEEEEEcCCcceEEEEec-cceee
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL 406 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~--~~l~~~~~~~~~~v~~~~~-~~~~~ 406 (927)
+||+.+|+..+.+++| ...|+.++|+-.. ..++||+ ++++||-.+ .+.+.++....+.|..+.. ...++
T Consensus 85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 9999999999999999 8899999998777 7888887 899999754 5677777776778888888 77899
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
+||.||+++.+++..|.. ...|.+| ||++++||+||+...+++-|+++ +-|-.+|+.
T Consensus 160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 999999999999987765 4456664 89999999999999999999999 999999874
Q ss_pred EeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEE----ccCCEEEEEEc
Q 002405 486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD----VYEDYILVTYR 561 (927)
Q Consensus 486 ~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~v~~~ 561 (927)
-.-..-.+..++......-..+..++++ +.+..+.+|+.. +..++.+..+++.++..+ |--+.++++..
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sg----SEDG~Vy~wdLv---d~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSG----SEDGKVYFWDLV---DETQISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEec----cCCceEEEEEec---cceeeeeeccCCceeEEeeecccCccceeEecC
Confidence 2111111122233332222233334332 234567788662 334555555666554433 33444666554
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=3.8e-21 Score=206.44 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=208.3
Q ss_pred cceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCc
Q 002405 132 GLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (927)
Q Consensus 132 ~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (927)
...|+++ .++++.+++++.+|.+.+|+.+..... . ....+..
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~-----------------------------------~~~~~~~ 52 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-R-----------------------------------TLKGHTG 52 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-E-----------------------------------EEecCCc
Confidence 3455555 455678888888999998766532210 0 0112333
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEec
Q 002405 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (927)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~ 285 (927)
.+..+. ++++++.+++++.++.+++|+....+. ..+|...+ ++.|+|+++++++++.||.|++|++
T Consensus 53 ~i~~~~----------~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 53 PVRDVA----------ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred ceeEEE----------ECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 444444 477888888888899999999876432 25677777 9999999999999999999999999
Q ss_pred cCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC
Q 002405 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (927)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~ 365 (927)
.+ ++....+.. |.+.|.+++|+|++.++++++.|+.+++||+.+++....+..| ...+.++.++|++
T Consensus 123 ~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~--- 189 (289)
T cd00200 123 ET-GKCLTTLRG--------HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDG--- 189 (289)
T ss_pred CC-cEEEEEecc--------CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCc---
Confidence 86 666666666 8999999999999999999998999999999988888888776 6689999999987
Q ss_pred cccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceE
Q 002405 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (927)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (927)
..++.++ .+.+|+...++.......|...+..+.+ +..+++++.|+.+++|++..+..
T Consensus 190 -~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--------------- 253 (289)
T cd00200 190 -EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--------------- 253 (289)
T ss_pred -CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee---------------
Confidence 5554443 8899999988888877778777865555 56777777799999999765432
Q ss_pred EEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
...+..|..+|.+++|+|+|+++++++.||.+ +|+
T Consensus 254 -----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 -----VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -----EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 23344788899999999999999999999999 985
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=4.2e-23 Score=205.23 Aligned_cols=265 Identities=14% Similarity=0.217 Sum_probs=203.1
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeeccccee-----------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
-++.|+|||+++++++-||-+.+|+..+++.. .-+.++| |+.||.|...+|+|+.||.|+||.+.+ |
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence 45778999999999999999999998877543 2367899 999999999999999999999999999 8
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l 369 (927)
.+++.+.. +|+..|+|+.||.|+..+.+++.|.++++--+.+|+++..++|| .+.|+...|.++| ..+
T Consensus 296 ~ClRrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i 363 (508)
T KOG0275|consen 296 QCLRRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI 363 (508)
T ss_pred hHHHHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence 89988874 29999999999999999999999999999999999999999999 8899999999999 777
Q ss_pred cccc---eeEEEcCCCceEEEEEcCC--cceE---EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEE
Q 002405 370 MSGT---SMMQWDEYGYRLYAIEEGS--SERV---LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (927)
Q Consensus 370 ~sg~---~~~~W~~~~~~l~~~~~~~--~~~v---~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (927)
++++ ++++|+..+.+++.+++.. +-.| .-++- ...++.++..+++.+-.+. .+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQ---------------- 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQ---------------- 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ce----------------
Confidence 7665 9999999999998887542 2223 22221 3455666666666553321 11
Q ss_pred EeecCcccc---cCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeec
Q 002405 441 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (927)
Q Consensus 441 ~~~~~~~~~---~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~ 516 (927)
+...+. -..+..-++++||.|.++...|.|+.. .|++.+|+...+-.. +|++ +.|+.-.++--+.+.|.+
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEkd--vIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEKD--VIGLTHHPHQNLLASYSE 499 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cccc--ccccccCcccchhhhhcc
Confidence 112221 123456678899999999999999999 999999987665432 3332 567766655444444532
Q ss_pred CCCeEEEEEe
Q 002405 517 SSNTYELLFY 526 (927)
Q Consensus 517 ~~~~~~l~l~ 526 (927)
+.-+++|
T Consensus 500 ---DgllKLW 506 (508)
T KOG0275|consen 500 ---DGLLKLW 506 (508)
T ss_pred ---cchhhhc
Confidence 2344555
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=9.3e-21 Score=203.37 Aligned_cols=270 Identities=19% Similarity=0.287 Sum_probs=212.7
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc---eecCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~---~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
.+|...|.++.| +|+|+.+++++.++.+.+|+....+ ...+|...+ ++.|+|+++.+++++.||.|
T Consensus 6 ~~h~~~i~~~~~----------~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 6 KGHTGGVTCVAF----------SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred cccCCCEEEEEE----------cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 356677888775 6778888888888889999876543 236788888 99999999999999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
++|++.. ++....+.. |.+.|.+++|+|+++++++++.|+.+.+|++.+++....+..| ...+.++.++|
T Consensus 76 ~i~~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 145 (289)
T cd00200 76 RLWDLET-GECVRTLTG--------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSP 145 (289)
T ss_pred EEEEcCc-ccceEEEec--------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcC
Confidence 9999987 566677776 8889999999999999999998999999999988888888866 67899999999
Q ss_pred CCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
++ ..++++. .+.+|+..+++.......|...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 146 ~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---------- 211 (289)
T cd00200 146 DG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC---------- 211 (289)
T ss_pred cC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce----------
Confidence 86 6666553 8899999988888888888877765555 55788888899999999765332
Q ss_pred CcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeCCccceeeeEEEEEEeeC--CEEE
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIV 510 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~v~~~~W~~--~~li 510 (927)
...+..|..++.+++|+|++.++++++.+|.+ +|++.+++-. .+. .+ ...+..+.|.+ ..++
T Consensus 212 ----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 212 ----------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GH--TNSVTSLAWSPDGKRLA 277 (289)
T ss_pred ----------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--cc--CCcEEEEEECCCCCEEE
Confidence 33444788899999999999999999989999 9999865432 222 11 12466788875 5666
Q ss_pred EEEeecCCCeEEEEEee
Q 002405 511 VCNYIDSSNTYELLFYP 527 (927)
Q Consensus 511 ~~~~~~~~~~~~l~l~~ 527 (927)
+++ .+..+++|+
T Consensus 278 ~~~-----~d~~i~iw~ 289 (289)
T cd00200 278 SGS-----ADGTIRIWD 289 (289)
T ss_pred Eec-----CCCeEEecC
Confidence 552 334677773
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=192.06 Aligned_cols=311 Identities=14% Similarity=0.209 Sum_probs=223.7
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
+.+..+|+.+.+++|+.|....+|+..+++.. .+|.+.| |+.||.+|.+||||.-+|.|+||++.+ +....++..
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~~ 146 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLDQ 146 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEeec
Confidence 34556788888888888888889998877633 7999999 999999999999999999999999998 655555543
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---e
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (927)
.-+.+-=+.|+|-+..|++|+.||.+-+|.+..+...+.+.|| ..++++=.|.|+| +.++++. +
T Consensus 147 --------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdG----Kr~~tgy~dgt 213 (399)
T KOG0296|consen 147 --------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDG----KRILTGYDDGT 213 (399)
T ss_pred --------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCC----ceEEEEecCce
Confidence 3456677899999999999999999999999887778888888 8889999999998 7777775 9
Q ss_pred eEEEcCCCceEEEEEcCCcc---eEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccccc
Q 002405 375 MMQWDEYGYRLYAIEEGSSE---RVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (927)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~---~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (927)
+++|++.+++.+....+... .-..+.. +..+++|+.++..++-.... .++...... ..|....+
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s--gKVv~~~n~----------~~~~l~~~ 281 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS--GKVVNCNNG----------TVPELKPS 281 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc--ceEEEecCC----------CCcccccc
Confidence 99999999988887764221 1133333 56677788887765533222 222111110 01333333
Q ss_pred CCCc---eEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeC-CEEEEEEeecCCCeEEEEE
Q 002405 451 QNWP---VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLF 525 (927)
Q Consensus 451 ~~~~---I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~-~~li~~~~~~~~~~~~l~l 525 (927)
+... |.++.+|..=...|+|+-||++ +||..+.+.|.. -.+| -.|+.+.|.+ +++.+||.. ..+|.
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~--c~he--~~V~~l~w~~t~~l~t~c~~-----g~v~~ 352 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI--CEHE--DGVTKLKWLNTDYLLTACAN-----GKVRQ 352 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhhee--ccCC--CceEEEEEcCcchheeeccC-----ceEEe
Confidence 3333 4455556667889999999999 999987654422 1122 3388999998 788888664 56888
Q ss_pred eeCCCCCccceeEEEe-cCCcc--EEEEccCCEEEEEEcCCeEEEEEE
Q 002405 526 YPRYHLDQSSLLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 526 ~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~l~v~~~d~~i~l~~~ 570 (927)
|+.. . .+++..+. +...+ +.+++.++.+++++.|++.++|.+
T Consensus 353 wDaR-t--G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 353 WDAR-T--GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eecc-c--cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 8762 1 22332221 12223 456788889999999999999975
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=6.2e-22 Score=196.31 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=178.2
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCCCcEEEEEecC
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRR 277 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~~~~la~g~~D 277 (927)
+++|...|.+++| .|-..++++++.|++++++|..+.... ......| +++|+|.|.+|++|.+-
T Consensus 168 lYDH~devn~l~F----------HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 168 LYDHVDEVNDLDF----------HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred hhhccCcccceee----------cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence 4566667777765 677889999999999999998754322 2345678 99999999999999999
Q ss_pred CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc-ccccceecc
Q 002405 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSP 356 (927)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~-~~~~~v~s~ 356 (927)
-++|+||+++ .++..... +..+|++.|+++.+|+.|+.-++|+.||.|++||--+++|+.++.. |+.+.|.+.
T Consensus 238 p~~rlYdv~T-~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 238 PTLRLYDVNT-YQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred CceeEEeccc-eeEeeecC-----cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 9999999987 43332111 2335999999999999999999999999999999988999999875 777889999
Q ss_pred eecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCC--cceE-----EEEec-cceeeecc-cCCCeeeeeeeecCC
Q 002405 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV-----LIFSF-GKCCLNRG-VSGMTYARQVIYGED 424 (927)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~--~~~v-----~~~~~-~~~~~s~s-~d~~~~~w~~~~~~~ 424 (927)
.|..++ .++.|.+ .+++|...+++++....|- .++. ..|.- ..+++.-. ..+.+..||..+++.
T Consensus 312 ~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 312 VFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred EEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 999998 7777655 8999999999998876542 1111 01111 11211111 112344466554433
Q ss_pred eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
. ..--.+|+++++.+.-||.+.-+.++|.|-.+ .|-.
T Consensus 388 ~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 388 V-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred h-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 1 22346899999999999999999999999988 8853
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=2.2e-22 Score=211.43 Aligned_cols=254 Identities=16% Similarity=0.219 Sum_probs=191.2
Q ss_pred ecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 253 ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
+.||++.| ++.|.| .+.+|++|+.|+.|+||++-..+++++++.+ |..+|.+++|+++|..+.+++.|+.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------chhhhhhhhccccCCeeeeeeccee
Confidence 47999999 999999 8999999999999999999876889999999 9999999999999999999999999
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcCCcceEEEEec---ccee
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (927)
+++||+++|++..++.. .....++.|+|++ ...+++.++ .++.||.++++++.....|-+.|..+.| ++..
T Consensus 282 lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL--DKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeccccceEEEEEec--CCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 99999999999988865 3567889999997 224455554 8999999999988777778788877777 8999
Q ss_pred eecccCCCeeeeeeeecCCeEEEeecC--CC------CcceE-------------EE-----eecCcccccCCC--ceEE
Q 002405 406 LNRGVSGMTYARQVIYGEDRLLVVQSE--DT------DELKI-------------LH-----LNLPVSYISQNW--PVQH 457 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~~~~~~~~~~~~~--~~------~~~~w-------------~~-----~~~~~~~~~~~~--~I~~ 457 (927)
++.+.|+++++|+....-.-.++.... .. +...| .. ...-..+.||.- --..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 999999999999975432211111110 00 11111 00 011234566643 3456
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeC---CEEEEEEeecCCCeEEEEEe
Q 002405 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG---KIIVVCNYIDSSNTYELLFY 526 (927)
Q Consensus 458 va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~---~~li~~~~~~~~~~~~l~l~ 526 (927)
+.|||||++|++|..+|.+ +||.++-+ ++... +..+-.|+++.|.+ ..+++|. -+..|.+|
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~l-kah~~~ci~v~wHP~e~Skvat~~-----w~G~Ikiw 502 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKL-KAHDQPCIGVDWHPVEPSKVATCG-----WDGLIKIW 502 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhh--hhhcc-ccCCcceEEEEecCCCcceeEecc-----cCceeEec
Confidence 8999999999999999999 99987754 22111 11124688999974 3555552 23566666
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=7.6e-21 Score=185.01 Aligned_cols=255 Identities=15% Similarity=0.226 Sum_probs=193.7
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCC-CcEEEEEecC
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPE-QQILAVGTRR 277 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~-~~~la~g~~D 277 (927)
.++...+.++.| ..||..+++++.|+++.+|+....... .+|.+.| .++|+|. ..++|+++.|
T Consensus 17 ~~~~~~v~Sv~w----------n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAW----------NCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEE----------cccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 355666777665 789999999999999999987655322 6899888 8888884 6799999999
Q ss_pred CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecce
Q 002405 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (927)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~ 357 (927)
.+|++||+.. +++...... ++.-.-++|||||.++++++.|..|...|..+.+.+.+.+. .-.++.+.
T Consensus 87 k~ir~wd~r~-~k~~~~i~~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~--~~e~ne~~ 154 (313)
T KOG1407|consen 87 KTIRIWDIRS-GKCTARIET---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF--KFEVNEIS 154 (313)
T ss_pred ceEEEEEecc-CcEEEEeec---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc--cceeeeee
Confidence 9999999998 777776654 55556789999999999999999999999988776665544 34566677
Q ss_pred ecCCCCCCccccccc-c--eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeec
Q 002405 358 VKPNQDCKYEPLMSG-T--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (927)
Q Consensus 358 ~sp~~~~~~~~l~sg-~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~ 431 (927)
|+.++ +..++.+| + .++.|. .-+.+..+++|....+++.| |+++++|+.|..+.+||+..--
T Consensus 155 w~~~n--d~Fflt~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi-------- 222 (313)
T KOG1407|consen 155 WNNSN--DLFFLTNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI-------- 222 (313)
T ss_pred ecCCC--CEEEEecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh--------
Confidence 76433 22344455 2 455554 66778888899888766655 9999999999999999975322
Q ss_pred CCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--EEeeCCccceeeeEEEEEEeeCCE
Q 002405 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKI 508 (927)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~--w~~f~~~~~e~~~~v~~~~W~~~~ 508 (927)
+...+.-+.|||+.++||-||++||+|++|-.| +=++.+|. |+. ..+ -....++|.++.
T Consensus 223 ------------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----~~~--~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 223 ------------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----PCE--GPTFTVAWHPKR 284 (313)
T ss_pred ------------hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----ecc--CCceeEEecCCC
Confidence 234566789999999999999999999999999 99998875 321 011 113358998764
Q ss_pred EEE
Q 002405 509 IVV 511 (927)
Q Consensus 509 li~ 511 (927)
.+.
T Consensus 285 ~LL 287 (313)
T KOG1407|consen 285 PLL 287 (313)
T ss_pred cee
Confidence 443
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=199.59 Aligned_cols=283 Identities=14% Similarity=0.211 Sum_probs=208.1
Q ss_pred CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
|...-+ |..|||||++|++|+.||-|.||+..+ |+..+-++-..-..-.-+..+|.|+.||.|...||+|+.||.|+|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 444556 999999999999999999999999987 654332221111111127899999999999999999999999999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeee
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLN 407 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s 407 (927)
|.+.+|.|++.+.-.|...|+++.|+.|+ ..+.|++ ++++-...+++++..+.||++.|....| |..+++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999999999985558999999999998 7777777 8999999999999999999999944444 899999
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc--cCCCceEEEEEcc-CCCEEEEEeCCceE-EEEccCC
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~I~~va~sp-dG~~la~ag~dg~i-~wd~~s~ 483 (927)
++.|+++++|+..+++. ..+|. +...+|.++-.-| +-.+++++.+..++ +-+++..
T Consensus 366 aSsDgtvkvW~~KtteC--------------------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTEC--------------------LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred ecCCccEEEecCcchhh--------------------hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 99999999999877665 33332 4566888887765 56789999999999 9999888
Q ss_pred cEEeeCCcccee-eeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEEecCCccEEEEccCCEEEEEE
Q 002405 484 KWRVFGDITQEQ-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTY 560 (927)
Q Consensus 484 ~w~~f~~~~~e~-~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 560 (927)
-.+.|..-.-|. +|....+.-.|..+-+. ..+..+.+|+.. .|......+...+ --+...|..+.|+.++
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYci-----gED~vlYCF~~~sG~LE~tl~VhEkdv--IGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCI-----GEDGVLYCFSVLSGKLERTLPVHEKDV--IGLTHHPHQNLLASYS 498 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEE-----ccCcEEEEEEeecCceeeeeecccccc--cccccCcccchhhhhc
Confidence 788886554443 23322333333333222 123445556553 3333222222211 1245568888899999
Q ss_pred cCCeEEEEE
Q 002405 561 RPFDVHIFH 569 (927)
Q Consensus 561 ~d~~i~l~~ 569 (927)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999984
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-20 Score=210.04 Aligned_cols=293 Identities=13% Similarity=0.172 Sum_probs=216.0
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
+..+ .++|+|...++.++--+|.|++||.+. +.++..+.. |.|||+.++|+|++-.++||++|.+|+||+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rFde--------HdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRFDE--------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhhhc--------cCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 4556 899999999999999999999999998 889999988 999999999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecc
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRG 409 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s 409 (927)
....+++.+|.|| .+.|..+.|++.- .-++|++ ++++|+..+.+++.++.||...|++-.| ...++|+|
T Consensus 80 Yk~rrclftL~GH-lDYVRt~~FHhey----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGH-LDYVRTVFFHHEY----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred cccceehhhhccc-cceeEEeeccCCC----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec
Confidence 9999999999999 9999999999875 6677777 9999999999999999999999977777 56899999
Q ss_pred cCCCeeeeeeeecCCeEEEeecCCCCcce--------E--EEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EE
Q 002405 410 VSGMTYARQVIYGEDRLLVVQSEDTDELK--------I--LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (927)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~--------w--~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~w 478 (927)
.|.|+++||+.--..+-. ..+.-.+... . ....+...+.||.--|+-++|+|.-..+++|+.|..+ +|
T Consensus 155 LDQTVRVWDisGLRkk~~-~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNK-APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCC-CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence 999999999853222111 1110000000 0 0111234566899899999999999999999999999 99
Q ss_pred Ecc-CCcEEeeCCccceeeeEEEEEEeeC--CEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCE
Q 002405 479 DIR-QKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDY 555 (927)
Q Consensus 479 d~~-s~~w~~f~~~~~e~~~~v~~~~W~~--~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 555 (927)
.++ ++-|..=.-..|-+ .|.++.+.+ +.+++. +.+..+|+|+-++...-+..-+..-....+...|..+.
T Consensus 234 rmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSn-----sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL 306 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSN-----SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL 306 (1202)
T ss_pred EeccccceeehhhhcccC--CcceEEecCccceeEec-----CCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence 985 55686532222322 256666664 444433 34567999987521110000011111123444555666
Q ss_pred EEEEEcCCeEEEEEEEE
Q 002405 556 ILVTYRPFDVHIFHVKL 572 (927)
Q Consensus 556 l~v~~~d~~i~l~~~~~ 572 (927)
++.+. |+-+.+|.++.
T Consensus 307 fAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 307 FAAGH-DSGMIVFKLER 322 (1202)
T ss_pred eeeec-CCceEEEEEcc
Confidence 66665 45566788764
No 61
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.2e-18 Score=186.09 Aligned_cols=419 Identities=15% Similarity=0.209 Sum_probs=251.5
Q ss_pred CCCceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEE
Q 002405 19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (927)
Q Consensus 19 ~~~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~ 97 (927)
|+..-.++||.+.+-||++ +++.|.||+.. +. .+....-...+.+.+-+++|+ +|.+|+....+|.|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~----w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NN----WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccC-CC----ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 4566668999998889988 79999999996 42 111111111245667799999 56688888899999999998
Q ss_pred ecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCc
Q 002405 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (927)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~ 177 (927)
..+.+... ...+..+|++ ++.+.++.+++|+.||.+..++-..+... +
T Consensus 99 ~lk~~~~~---d~~gg~IWsi------------------ai~p~~~~l~IgcddGvl~~~s~~p~~I~-~---------- 146 (691)
T KOG2048|consen 99 TLKQKYNI---DSNGGAIWSI------------------AINPENTILAIGCDDGVLYDFSIGPDKIT-Y---------- 146 (691)
T ss_pred cCceeEEe---cCCCcceeEE------------------EeCCccceEEeecCCceEEEEecCCceEE-E----------
Confidence 66543221 1111223432 44555678999999996655443221110 1
Q ss_pred ccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee----
Q 002405 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---- 253 (927)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---- 253 (927)
. ..+...++.+.++.| .++|..++.|+.|+.+++||...+...
T Consensus 147 ----------------------~-r~l~rq~sRvLslsw----------~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 147 ----------------------K-RSLMRQKSRVLSLSW----------NPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred ----------------------E-eecccccceEEEEEe----------cCCccEEEecccCceEEEEEcCCCceEEEee
Confidence 0 112233567777766 788888899999999999998766543
Q ss_pred -----cCC--CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 002405 254 -----LGS--GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (927)
Q Consensus 254 -----~~h--~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (927)
... .-.| ++.|= +...||+|...|+|+.||-.. +.++...+. |.+.|.|++-++++.++.++
T Consensus 194 ~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~--------h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHSC--------HDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhhh--------hhcceeEEEEcCCCCeEEEc
Confidence 111 1122 55544 456799999999999999988 888888887 99999999999999999999
Q ss_pred EcCCcEEEEEccCCee---EEEeccccccceecceecCCC----------------C-----------CCcccccccc--
Q 002405 326 WKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQ----------------D-----------CKYEPLMSGT-- 373 (927)
Q Consensus 326 ~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~s~~~sp~~----------------~-----------~~~~~l~sg~-- 373 (927)
+.|+.+.-+...++.- ....+.+|...|.+++..++. . .-....+++.
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~ 343 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPE 343 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCcc
Confidence 9999999998876532 222233334455554433221 0 0000111111
Q ss_pred --eeEEEcCCCceEEEEEcC----Ccce-------------E--EEEec-cceeeecccCCCeeeeeeeec---------
Q 002405 374 --SMMQWDEYGYRLYAIEEG----SSER-------------V--LIFSF-GKCCLNRGVSGMTYARQVIYG--------- 422 (927)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~----~~~~-------------v--~~~~~-~~~~~s~s~d~~~~~w~~~~~--------- 422 (927)
..+.|...+..++..... |.+. | .++++ |+.++-+. -...+++.+...
T Consensus 344 ~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~ 422 (691)
T KOG2048|consen 344 NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVD 422 (691)
T ss_pred ceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEec
Confidence 455676666666554322 2111 1 33333 33222211 111222222211
Q ss_pred -----------------CCeEEEeecCCCCcceEEEeec--Cc-------ccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002405 423 -----------------EDRLLVVQSEDTDELKILHLNL--PV-------SYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (927)
Q Consensus 423 -----------------~~~~~~~~~~~~~~~~w~~~~~--~~-------~~~~~~~~I~~va~spdG~~la~ag~dg~i 476 (927)
++++++.. .+...|+..+. |. .-.+...+|..++.||||+|+|+++.+|.|
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 11111111 11223333221 11 111445679999999999999999999999
Q ss_pred -EEEccCCcEEeeCCccceeeeEEEEEE-eeCCEEEEEEeecCCCeEEEEE
Q 002405 477 -LYDIRQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVCNYIDSSNTYELLF 525 (927)
Q Consensus 477 -~wd~~s~~w~~f~~~~~e~~~~v~~~~-W~~~~li~~~~~~~~~~~~l~l 525 (927)
+|++.+++-+.+..... ..+...+.. |..+.++++... ...+|..+
T Consensus 500 ~v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats~--nQv~efdi 547 (691)
T KOG2048|consen 500 FVYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATSN--NQVFEFDI 547 (691)
T ss_pred EEEEcccceeecchhccC-cceeeeeccccccCcEEEEecC--CeEEEEec
Confidence 99999998877764332 223333444 667777776332 34455555
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=209.57 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=147.0
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcC-CCcEEEEEecCCe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAP-EQQILAVGTRRGV 279 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp-~~~~la~g~~Dg~ 279 (927)
+.+|...|.++.| +...++++.+-|.|+++|+....+++ -.|.+.| ||+|+| |.+++++||-||.
T Consensus 365 f~GHt~DILDlSW-----------SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 365 FKGHTADILDLSW-----------SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred hhccchhheeccc-----------ccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence 4678889999988 45678899999999999998877665 6799999 999999 7899999999999
Q ss_pred EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceec
Q 002405 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
||||++.+ .+ +.-+.. -..-|++++|+|||+..++|+.+|.+++|++.+.++.....-+. +
T Consensus 434 vRiWsI~d-~~-Vv~W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~---------~ 494 (712)
T KOG0283|consen 434 VRLWSISD-KK-VVDWND--------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL---------H 494 (712)
T ss_pred eEEeecCc-Ce-eEeehh--------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee---------c
Confidence 99999976 33 222222 34789999999999999999999999999999877665433210 0
Q ss_pred CCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec--cc--eeeecccCCCeeeeeeeecCCeEEEeecCCCC
Q 002405 360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--GK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (927)
Q Consensus 360 p~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~--~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (927)
+ + + -..|. +|..|.+ +. .++..+.|..|+++|..+.+.
T Consensus 495 ~-~----K---------------------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----------- 536 (712)
T KOG0283|consen 495 N-K----K---------------------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----------- 536 (712)
T ss_pred c-C----c---------------------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh-----------
Confidence 0 0 0 00112 4433333 22 245567788888877543221
Q ss_pred cceEEEeecCcccccCCC--ceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 436 ELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 436 ~~~w~~~~~~~~~~~~~~--~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
...|.|... .=...+|+.||++|++|++|..+ +|+...
T Consensus 537 ---------v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 ---------VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 344544321 12347899999999999999999 999754
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-19 Score=170.49 Aligned_cols=244 Identities=16% Similarity=0.240 Sum_probs=170.2
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCC-----ce------eEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQ-----HK------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~-----~~------~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d 88 (927)
....|+|.|.|.+.|+++ .++++|--... +. -+...++|+. .+.|.+.+++|||+|+.||+|+.|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k---hhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK---HHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeecc---ccCccEEEEEecCccCeEEecCCC
Confidence 455689999999999986 56788764310 00 0123345543 357999999999999999999999
Q ss_pred cEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEee--c---cCCeEEEEecCCcEEEEecCCcc
Q 002405 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S---DNKHMLLGLSDGSLYSISWKGEF 163 (927)
Q Consensus 89 g~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~---~~~~l~v~~~dg~i~~~~w~~~~ 163 (927)
.+|++.....+.... .++ .++ +.-+++.|+.++ - .+..+++....|...++.-+-..
T Consensus 111 k~ik~l~fn~dt~~~--~g~--------dle--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNA--TGH--------DLE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred ceEEEEecccccccc--cCc--------cee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999987664322111 111 111 112233444332 1 23445665555554444333222
Q ss_pred ccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc
Q 002405 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK 243 (927)
Q Consensus 164 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~ 243 (927)
+..+ ..+.+|.+.|..+ .+=+|.++++++.|.+++
T Consensus 173 g~~~----------------------------------~a~sghtghilal-----------yswn~~m~~sgsqdktir 207 (350)
T KOG0641|consen 173 GQGF----------------------------------HALSGHTGHILAL-----------YSWNGAMFASGSQDKTIR 207 (350)
T ss_pred CCcc----------------------------------eeecCCcccEEEE-----------EEecCcEEEccCCCceEE
Confidence 2221 1123455566544 366899999999999999
Q ss_pred eeeeccccee---------cC-CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeE
Q 002405 244 LAEFIKIDKE---------LG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (927)
Q Consensus 244 ~w~~~~~~~~---------~~-h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~ 312 (927)
.||+.-..+. .| ...+| .+++.|.|++||+|-.|....+||+.. ++.++.+.. |+..|.|
T Consensus 208 fwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~p--------hsadir~ 278 (350)
T KOG0641|consen 208 FWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHP--------HSADIRC 278 (350)
T ss_pred EEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCC--------CccceeE
Confidence 9998755433 11 23567 999999999999999999999999997 889999888 9999999
Q ss_pred EEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 313 IAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 313 l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
+.|||...++.+|+.|..|++-|+.|.
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccc
Confidence 999999999999999999999999774
No 64
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.3e-20 Score=184.17 Aligned_cols=288 Identities=15% Similarity=0.150 Sum_probs=191.6
Q ss_pred CceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEe-cCcEEEEEEEEe
Q 002405 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQI 98 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t-~dg~l~i~~l~~ 98 (927)
...-++||.||+.||++ +|++|+||+++ . .+..-.|..+.--+++.-+.|+|+||.+.+++.. ..+.|++|.+..
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-D--F~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVR-D--FENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecc-h--hhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 56679999999999998 68899999996 2 2222334444334578889999999998777654 556899998864
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
.....+.. .........+....++.+.. ..++.++..|+.++.|..|.+|+..+...+
T Consensus 165 ~~dG~~~~----~~v~~D~~~f~~kh~v~~i~-----iGiA~~~k~imsas~dt~i~lw~lkGq~L~------------- 222 (420)
T KOG2096|consen 165 KTDGSGSH----HFVHIDNLEFERKHQVDIIN-----IGIAGNAKYIMSASLDTKICLWDLKGQLLQ------------- 222 (420)
T ss_pred cccCCCCc----ccccccccccchhcccceEE-----EeecCCceEEEEecCCCcEEEEecCCceee-------------
Confidence 43321100 00001111111111111100 244566788899999999988665432211
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc-------
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------- 251 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~------- 251 (927)
++.-+...++.+++||||++++++.-...+++|+..-.+
T Consensus 223 ----------------------------------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 223 ----------------------------------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred ----------------------------------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 111122234557889999999999888889999865221
Q ss_pred ----eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC---CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE
Q 002405 252 ----KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 252 ----~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~---~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (927)
.+.||..+| ..+|||+.+.+++.+.||++||||.+-. ++--..++....+...+-..++ .++.||.|..||
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA 347 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLA 347 (420)
T ss_pred hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEE
Confidence 127999999 9999999999999999999999998631 1111122211111111123344 899999999999
Q ss_pred EEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
++.. .+++++..+.++..-+++..|...++++.|++++ .++++.+
T Consensus 348 ~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG 392 (420)
T KOG2096|consen 348 VSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG 392 (420)
T ss_pred eecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence 9876 6899999988887777776557789999999998 7777655
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=5.5e-20 Score=179.55 Aligned_cols=254 Identities=15% Similarity=0.144 Sum_probs=197.3
Q ss_pred ccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecC
Q 002405 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR 277 (927)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~D 277 (927)
+.+.+|..+++.+.| ..+|.++++++.|.++.+|-..+++++ .||+++| |++++-+.+.+++|+.|
T Consensus 4 i~l~GHERplTqiKy----------N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKY----------NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred cccccCccccceEEe----------cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecccc
Confidence 345678888888887 679999999999999999988777766 8999999 99999999999999999
Q ss_pred CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-----CcEEEEEcc-------CCeeEEEe
Q 002405 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----RGLTVWSVS-------GCRLMSTI 345 (927)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-----g~v~vW~~~-------~~~~~~~l 345 (927)
.++++||+.+ |+.+.+++. ..+|..+.|+++|++++...++ +.|.++++. +..+...+
T Consensus 74 ~t~kLWDv~t-Gk~la~~k~---------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 74 QTAKLWDVET-GKQLATWKT---------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ceeEEEEcCC-CcEEEEeec---------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 9999999998 888888875 6789999999999988776553 578999986 44556666
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCCc-eEEEEEcCCcceEEEEec---cceeeecccCCCeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQ 418 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~ 418 (927)
..+ .+.+++..|+|-+ +.+++|. .+..|+..++ +++.....|...|..+.+ ..+++|+|.|.+-++||
T Consensus 144 ~t~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 144 PTP-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred cCC-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeee
Confidence 666 5778888999988 8888775 8999999886 444455778888855544 67899999999999999
Q ss_pred eeecCC--------------------eEEEeecCCCCcce---EEEe------------ecCcccccCCCceEEEEEccC
Q 002405 419 VIYGED--------------------RLLVVQSEDTDELK---ILHL------------NLPVSYISQNWPVQHVAASKD 463 (927)
Q Consensus 419 ~~~~~~--------------------~~~~~~~~~~~~~~---w~~~------------~~~~~~~~~~~~I~~va~spd 463 (927)
+..-.. .+.+-.|.+..+.- -+.. +-...+.+|-+||++++|+||
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 764321 11111111111100 0000 113467799999999999999
Q ss_pred CCEEEEEeCCceE-EEEc
Q 002405 464 GMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 464 G~~la~ag~dg~i-~wd~ 480 (927)
|+..++||.||.+ +.-.
T Consensus 299 GksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred CcccccCCCCceEEEEEe
Confidence 9999999999999 6543
No 66
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=5e-20 Score=210.21 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=158.7
Q ss_pred ecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCC------cceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEE
Q 002405 253 ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~La 323 (927)
+.||.+.| +++|+| ++++||+|+.||+|++||+.+.+ ..+..+.+ |.+.|.+++|+|++ ..||
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--------H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--------HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--------CCCcEEEEEeCcCCCCEEE
Confidence 46899999 999999 88999999999999999997622 23456666 99999999999986 6999
Q ss_pred EEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE---E
Q 002405 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L 397 (927)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~ 397 (927)
+|+.|++|+|||+.++....++.+| ...|.+++|+|++ ..+++++ ++++||+.+++.+....+|.+.. .
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 9999999999999999888889887 7789999999998 7888776 89999999998888888886542 2
Q ss_pred EEec-cceeeec----ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccc-ccCCCceEEEEEccCCCEEEEEe
Q 002405 398 IFSF-GKCCLNR----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAG 471 (927)
Q Consensus 398 ~~~~-~~~~~s~----s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~I~~va~spdG~~la~ag 471 (927)
.+.. +..++++ +.|+.+++||+......+ ... ..+...+....|+|||++|++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-------------------~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-------------------STVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-------------------eEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2333 4455544 357899999986544311 111 12233456678999999999998
Q ss_pred C-CceE-EEEccCCc
Q 002405 472 L-HGLI-LYDIRQKK 484 (927)
Q Consensus 472 ~-dg~i-~wd~~s~~ 484 (927)
. ||.+ +||+.+++
T Consensus 279 kgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 279 KGEGNIRCFELMNER 293 (493)
T ss_pred eCCCeEEEEEeeCCc
Confidence 5 9999 99998765
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.9e-20 Score=201.67 Aligned_cols=264 Identities=21% Similarity=0.252 Sum_probs=197.2
Q ss_pred CeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCC
Q 002405 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (927)
Q Consensus 31 g~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~ 110 (927)
...+|++....|++|+.. .+.....+. +. .+.+++|.|+|+|+.||+|+.+|.+.|||+...+.....
T Consensus 188 ~n~laValg~~vylW~~~-s~~v~~l~~-----~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~----- 255 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSAS-SGSVTELCS-----FG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL----- 255 (484)
T ss_pred CCeEEEEecceEEEEecC-CCceEEeEe-----cC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-----
Confidence 447888888899999985 332111111 11 467789999999999999999999999998743321111
Q ss_pred CCccceeeeEEeeccccccc-ccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCC
Q 002405 111 SGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (927)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 189 (927)
.+ +.+.|.+++.....+.+|+.+|.|..++.....
T Consensus 256 ------------------~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-------------------------- 291 (484)
T KOG0305|consen 256 ------------------RGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-------------------------- 291 (484)
T ss_pred ------------------cCCcCceeEEEeccCceEEEecCCCcEEEEEEecch--------------------------
Confidence 11 334555666666666666666666543211000
Q ss_pred CccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCC
Q 002405 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQ 268 (927)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~ 268 (927)
..+ ....+|...| .++|++|+
T Consensus 292 ------------------------------------------~~~----------------~~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 292 ------------------------------------------HVV----------------STLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred ------------------------------------------hhh----------------hhhhcccceeeeeEECCCC
Confidence 000 0025788888 88999999
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEE--cCCcEEEEEccCCeeEEEe
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW--KSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~--~Dg~v~vW~~~~~~~~~~l 345 (927)
+++|+|+.|+.+.|||... .....++.. |++.|.+++|+| ....||+|+ .|+.|++||+.++..+..+
T Consensus 314 ~~lASGgnDN~~~Iwd~~~-~~p~~~~~~--------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLS-PEPKFTFTE--------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV 384 (484)
T ss_pred CeeccCCCccceEeccCCC-ccccEEEec--------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence 9999999999999999966 667777777 999999999999 677999965 6899999999999888877
Q ss_pred ccccccceecceecCCCCCCcccccccc----eeEEEcCCCceEEEEEcCCcceEEEE--ec-cceeeecccCCCeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQ 418 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~s~d~~~~~w~ 418 (927)
.. .+.|.++.|++... +.+.+-+ .+.+|...+.++...+.+|..+|+.+ ++ |..+++|+.|.++++|.
T Consensus 385 dt--gsQVcsL~Wsk~~k---Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 385 DT--GSQVCSLIWSKKYK---ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cc--CCceeeEEEcCCCC---EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 65 36799999999861 3333333 78999999999999999999999544 45 89999999999999999
Q ss_pred eeec
Q 002405 419 VIYG 422 (927)
Q Consensus 419 ~~~~ 422 (927)
+...
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 7653
No 68
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=181.05 Aligned_cols=324 Identities=13% Similarity=0.108 Sum_probs=195.0
Q ss_pred eEEEeecCCceeEEEEEeeChHhhhhc-ccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeee
Q 002405 41 HIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS 119 (927)
Q Consensus 41 ~v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (927)
..+=|+.+|+.. .+.-....|..| +.+++++||.||+.||+++.|+.|++|++..-.+ ..|. ++
T Consensus 62 r~~~~k~~q~~f---~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr-------~~- 126 (420)
T KOG2096|consen 62 RNDQWKAKQPTF---VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR-------CI- 126 (420)
T ss_pred chhhhcccCCCc---ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-------Hh-
Confidence 355676654422 122222334444 6678999999999999999999999999963111 1110 00
Q ss_pred EEeecccccccccceEEEeeccCCeEEEEecCC-cEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCc
Q 002405 120 LVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGA 198 (927)
Q Consensus 120 ~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg-~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 198 (927)
+..+.....+...|++|-..+++.+.+| .++.+..+....+.... +...+.-..|
T Consensus 127 -----R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~-----~~v~~D~~~f-------------- 182 (420)
T KOG2096|consen 127 -----RQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH-----HFVHIDNLEF-------------- 182 (420)
T ss_pred -----hccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc-----cccccccccc--------------
Confidence 1111222334457888888888888877 56655544333332211 1000000000
Q ss_pred eecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee----cCCCCeEEEEEcCCCcEEEEE
Q 002405 199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVG 274 (927)
Q Consensus 199 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v~v~~sp~~~~la~g 274 (927)
-.-|+..+.++ -+..+++++++++.|.++-+|++. ++.+ .....-..+++||+|+++|++
T Consensus 183 -----~~kh~v~~i~i----------GiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 183 -----ERKHQVDIINI----------GIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred -----chhcccceEEE----------eecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe
Confidence 01123334333 235678899999999999999987 4433 111222268999999999999
Q ss_pred ecCCeEEEEeccC--CC-----cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 275 TRRGVVELYDLAE--SA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 275 ~~Dg~V~vwd~~~--~~-----~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
+-.-.|+||.+-- .| .....+++ |+..|...+|||+.+.+++.+.||+|+|||+.-.- ...+
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkG--------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY---~~~q 315 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKG--------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY---EAGQ 315 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheecc--------chhheeeeeeCCCcceeEEEecCCcEEEeeccceE---ecCC
Confidence 9999999999732 12 23345666 99999999999999999999999999999984321 1110
Q ss_pred ccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeE
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~ 426 (927)
|. ..+-.|+ .-+-+. +++.++ +.+++ |+.+ ..+...+++++....+++
T Consensus 316 -------------Dp----k~Lk~g~-~pl~aa-g~~p~R---------L~lsP~g~~l-A~s~gs~l~~~~se~g~~-- 364 (420)
T KOG2096|consen 316 -------------DP----KILKEGS-APLHAA-GSEPVR---------LELSPSGDSL-AVSFGSDLKVFASEDGKD-- 364 (420)
T ss_pred -------------Cc----hHhhcCC-cchhhc-CCCceE---------EEeCCCCcEE-EeecCCceEEEEcccCcc--
Confidence 00 1222211 000011 111111 33444 3332 223334555555555554
Q ss_pred EEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEE
Q 002405 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 478 (927)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~w 478 (927)
.|..-..|...|.+++|+|||+++|++|.+-..+.
T Consensus 365 -----------------~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 365 -----------------YPELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred -----------------chhHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 25555678999999999999999999998766643
No 69
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-17 Score=186.24 Aligned_cols=456 Identities=14% Similarity=0.128 Sum_probs=281.1
Q ss_pred CCCceEEEEEecCe--EEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEE
Q 002405 19 PSSQQIIYFKVNNG--LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (927)
Q Consensus 19 ~~~~~iv~fs~dg~--lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l 96 (927)
.+..| ..+..-|+ ++.++.+++.++||++ ....+..-.. ....+.+++= ++.+..++.. +.|..|.-
T Consensus 34 sn~VP-~~~~~~~~~~~vtt~vgksfqvYd~~-kl~ll~vs~~------lp~~I~alas--~~~~vy~A~g-~~i~~~~r 102 (910)
T KOG1539|consen 34 SNGVP-FRVVALGSTFYVTTCVGKSFQVYDVN-KLNLLFVSKP------LPDKITALAS--DKDYVYVASG-NKIYAYAR 102 (910)
T ss_pred cCCCc-eeeeecCceEEEEEecCceEEEEecc-ceEEEEecCC------CCCceEEEEe--cCceEEEecC-cEEEEEEc
Confidence 34556 45555554 3445579999999997 3222222111 1234455544 4445555543 33544432
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCC
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~ 176 (927)
++.. ++. ...+.+.|.-+.+-+++++.+..++.+.+|.........+.
T Consensus 103 --gk~i-------------~~~---------~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l-------- 150 (910)
T KOG1539|consen 103 --GKHI-------------RHT---------TLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYL-------- 150 (910)
T ss_pred --cceE-------------EEE---------eccccceEEEEeeecceEEEEEccCcEEEEEeccccccccc--------
Confidence 1110 000 11112345555666889999999999888653321110010
Q ss_pred cccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCc-ceEEEEEeCCcEEEEeeecCccceeeeccccee--
Q 002405 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-- 253 (927)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-- 253 (927)
. + .........|+++.+.+.+ |..+..+.+|+ +++|+..+++..
T Consensus 151 ---~-~-------------------~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~----------lql~Nvrt~K~v~~ 197 (910)
T KOG1539|consen 151 ---Q-S-------------------TFLKVEGDFITALLHPSTYLNKIVVGSSQGR----------LQLWNVRTGKVVYT 197 (910)
T ss_pred ---c-c-------------------eeeeccCCceeeEecchhheeeEEEeecCCc----------EEEEEeccCcEEEE
Confidence 0 0 0011122237777664443 55555555555 455777766544
Q ss_pred -cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCc
Q 002405 254 -LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (927)
Q Consensus 254 -~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~ 330 (927)
.++.+.+ ++.-+|-=..+|+|..||+|.++++.. ++.+.+++. ..|+|++++|..||. .||+|...|.
T Consensus 198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~--------d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ--------DWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred ecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEc--------cccceeEEEeccCCCeeEEeccCCce
Confidence 5667777 999999999999999999999999998 888888875 469999999999998 6677777799
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCC--C--ceEEEEEcCCcceEEEEec--
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY--G--YRLYAIEEGSSERVLIFSF-- 401 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~--~--~~l~~~~~~~~~~v~~~~~-- 401 (927)
+.+||+++.++...++..|.+++....|-|.. ..+++.+ +.+.|-.+ . .++++.-.||..+...+.|
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e----pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGE----PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCC----ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 99999999999888886547778888887765 5555554 56666443 2 3677777889877755555
Q ss_pred --cceeeecccCCCeeeeeeeecCCeEEEee-----c------C------CCC----------c----------------
Q 002405 402 --GKCCLNRGVSGMTYARQVIYGEDRLLVVQ-----S------E------DTD----------E---------------- 436 (927)
Q Consensus 402 --~~~~~s~s~d~~~~~w~~~~~~~~~~~~~-----~------~------~~~----------~---------------- 436 (927)
+..+.+++.|++.+.+++.+....-.+.+ . . .++ +
T Consensus 345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence 77899999999887776543211100000 0 0 000 0
Q ss_pred ceEEE--------eecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeCCccceeeeEEEEEEee-
Q 002405 437 LKILH--------LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL- 505 (927)
Q Consensus 437 ~~w~~--------~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~v~~~~W~- 505 (927)
..|+. .-.|..+......++++++|++|++..+|...|.| +||+++|.-+ .|+. ....+..++|++-.
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-CccccCceeEEEecC
Confidence 12321 11233333344678999999999999999999999 9999999865 4652 12223456766665
Q ss_pred -CCEEEEEEeecCCCeEEEEEeeCC--C------CCc--------------------cce---------------eEEEe
Q 002405 506 -GKIIVVCNYIDSSNTYELLFYPRY--H------LDQ--------------------SSL---------------LCRKS 541 (927)
Q Consensus 506 -~~~li~~~~~~~~~~~~l~l~~~~--~------l~~--------------------~~~---------------~~~~~ 541 (927)
+..+|+|++. .-+.+|+.. . ++. ..+ .|.-.
T Consensus 504 ~n~~~vsa~~~-----Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr 578 (910)
T KOG1539|consen 504 TNRLLVSAGAD-----GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR 578 (910)
T ss_pred CCceEEEccCc-----ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence 4446666432 334444442 0 000 000 01111
Q ss_pred cCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 542 LLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 542 ~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
-.-+.++++|.-|++++-|++|++|++-
T Consensus 579 --itd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 579 --ITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred --eeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 1224668888899999999999999984
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.3e-20 Score=180.93 Aligned_cols=218 Identities=16% Similarity=0.109 Sum_probs=177.1
Q ss_pred cEEEEeeecCccceeeecccc----eecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 231 QLMSCSVSKKGLKLAEFIKID----KELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 231 ~~~~~~~~d~~~~~w~~~~~~----~~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
..+++++.||++++||...+. +++.|...| ++.|++ +.+.++++|.||+||+|+... +..+.++.+
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~g------- 145 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQTFNG------- 145 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-CcceEeecC-------
Confidence 467778889999999965432 237899999 999999 566788889999999999987 677889998
Q ss_pred CCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcC
Q 002405 305 DDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (927)
Q Consensus 305 ~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (927)
|..-|...+||| ++..+|+++.|+++++||+...-....+..| ...+.++.|+.... ..+++|+ .++.||.
T Consensus 146 -h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~---~vl~Tg~vd~~vr~wDi 220 (311)
T KOG0277|consen 146 -HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNH---NVLATGGVDNLVRGWDI 220 (311)
T ss_pred -CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCC---cEEEecCCCceEEEEeh
Confidence 999999999999 7889999999999999999543222337777 67899999887652 5677776 8999999
Q ss_pred CCce-EEEEEcCCcceEE--EEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCce
Q 002405 381 YGYR-LYAIEEGSSERVL--IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (927)
Q Consensus 381 ~~~~-l~~~~~~~~~~v~--~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (927)
...+ .+..+.+|.-.|. .+++ ...++|++.|.++++|+...++. ...++..|...+
T Consensus 221 r~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-------------------~~e~~~~HtEFv 281 (311)
T KOG0277|consen 221 RNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-------------------AIETVDHHTEFV 281 (311)
T ss_pred hhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-------------------hhhhhhccceEE
Confidence 8754 4556688988884 4444 56789999999999999876554 255677889999
Q ss_pred EEEEEcc-CCCEEEEEeCCceE-EEEc
Q 002405 456 QHVAASK-DGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 456 ~~va~sp-dG~~la~ag~dg~i-~wd~ 480 (927)
..+.||+ ++.++|+.|-|+.+ +|+.
T Consensus 282 ~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 282 CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eccccccccCceeeecccccceeeecc
Confidence 9999987 68899999999999 9984
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=6.7e-20 Score=187.23 Aligned_cols=259 Identities=12% Similarity=0.151 Sum_probs=199.8
Q ss_pred CcEEEEeeecCccceeeecccc--eecCCCCeE-EEEEc-CC--CcEEEEEecCCeEEEEeccCCCcc----eEEEeeec
Q 002405 230 GQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIA-PE--QQILAVGTRRGVVELYDLAESASL----IRTVSLYD 299 (927)
Q Consensus 230 G~~~~~~~~d~~~~~w~~~~~~--~~~~h~~~v-~v~~s-p~--~~~la~g~~Dg~V~vwd~~~~~~~----~~~l~~~~ 299 (927)
++.+++++-|++.++|+..... ...||.+++ ++++- ++ ...+++|+.|.++++|.++. +.. +..-++
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~-~~~~~~~~~~~~G-- 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV-GENKVKALKVCRG-- 191 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC-chhhhhHHhHhcc--
Confidence 7899999999999999875432 238999999 56553 33 34699999999999999987 432 222234
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc-------------------------CCeeEEEecccccccee
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSIS 354 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~-------------------------~~~~~~~l~~~~~~~v~ 354 (927)
|.++|-+|+-.+||..+++|+.|.++++|+.. .+.++.++.|| ...|+
T Consensus 192 ------Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs 264 (423)
T KOG0313|consen 192 ------HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVS 264 (423)
T ss_pred ------cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-cccee
Confidence 99999999999999999999999999999931 12345678888 89999
Q ss_pred cceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEE
Q 002405 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (927)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~ 428 (927)
++.|++. ..+.|++ +++.||..++++.....+. ..+.+++. .+.+++||.|..+++||-..++..+
T Consensus 265 ~V~w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-- 336 (423)
T KOG0313|consen 265 SVVWSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-- 336 (423)
T ss_pred eEEEcCC-----CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCce--
Confidence 9999885 4556666 9999999999887777653 34444444 6788999999999999988876643
Q ss_pred eecCCCCcceEEEeecCcccccCCCceEEEEEccCC-CEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeC
Q 002405 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (927)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG-~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~ 506 (927)
..+++.+|+..|.++.++|.. .++++|+.||++ +||+++-+=.+|.-..+.. .+..+.|..
T Consensus 337 ---------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~ 399 (423)
T KOG0313|consen 337 ---------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNE 399 (423)
T ss_pred ---------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccC
Confidence 246789999999999999965 578899999999 9999986545554333322 366789987
Q ss_pred CEEEE-EEeecCCCeEEEEEeeC
Q 002405 507 KIIVV-CNYIDSSNTYELLFYPR 528 (927)
Q Consensus 507 ~~li~-~~~~~~~~~~~l~l~~~ 528 (927)
..+|+ | +.+..||+|..
T Consensus 400 ~~~IvSG-----GaD~~l~i~~~ 417 (423)
T KOG0313|consen 400 GGLIVSG-----GADNKLRIFKG 417 (423)
T ss_pred CceEEec-----cCcceEEEecc
Confidence 75544 4 34567888855
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=5.9e-20 Score=209.68 Aligned_cols=265 Identities=17% Similarity=0.238 Sum_probs=215.8
Q ss_pred eEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEE
Q 002405 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (927)
Q Consensus 134 ~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (927)
.+.+.....+.+..++.++.++. |+...... ....+.+|.+.|..
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~---------------------------------i~~~l~GH~g~V~~ 254 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYL---------------------------------ILTRLVGHFGGVWG 254 (537)
T ss_pred hhhhheeecCeEEecCCCceeEE--eecccceE---------------------------------EEeeccCCCCCcee
Confidence 34455555677888888888855 44333221 12335678888988
Q ss_pred EEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC
Q 002405 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
+++ ..-+..+++++.|.++++||..++++. .||...+ |+.. ....+++|+.|.+|++|++++ +
T Consensus 255 l~~----------~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n-~ 321 (537)
T KOG0274|consen 255 LAF----------PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN-G 321 (537)
T ss_pred EEE----------ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccC-c
Confidence 875 334778999999999999999888775 7899988 6654 445688899999999999997 8
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l 369 (927)
..++++.+ |+++|+++..+ +.++++|+.|++|+||++..++++.++.+| ...|.++.+.+. ..+
T Consensus 322 ~~l~l~~~--------h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-----~~~ 385 (537)
T KOG0274|consen 322 ACLNLLRG--------HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-----NRL 385 (537)
T ss_pred ceEEEecc--------ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----ceE
Confidence 89999988 99999999998 889999999999999999999999999998 889999988663 356
Q ss_pred cccc---eeEEEcCCCc-eEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeec
Q 002405 370 MSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (927)
Q Consensus 370 ~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~ 444 (927)
.+|+ ++++||.++. +++.++.+|..-+..+.+ .+.+++++.|+++++||...++.
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-------------------- 445 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-------------------- 445 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce--------------------
Confidence 6776 8999999999 999999999988877777 88999999999999999887665
Q ss_pred Cccccc-CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 445 PVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 445 ~~~~~~-~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
...+.+ |...|.++++. ...+++++.+|.+ +||+.++.
T Consensus 446 ~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 333444 55778777776 5788899999999 99998875
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=176.55 Aligned_cols=257 Identities=12% Similarity=0.183 Sum_probs=179.0
Q ss_pred CceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCC-ccEEEEEecCcEEEEEEEEe
Q 002405 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspD-g~~Lav~t~dg~l~i~~l~~ 98 (927)
..+-|+++.||+.||++ .|+++.+|++. +.. +......-.+.+.+..++|.|- ...+|+++.|..+++||+..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLE-RDR----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEec-chh----hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 34558999999999998 48899999997 321 1111111123346778899885 45789999999999999986
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
++.-.... ..+.. -..+.++++++++++..|..|..++-. .....
T Consensus 97 ~k~~~~i~---------------------~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r--~~~~~----------- 141 (313)
T KOG1407|consen 97 GKCTARIE---------------------TKGEN-INITWSPDGEYIAVGNKDDRITFIDAR--TYKIV----------- 141 (313)
T ss_pred CcEEEEee---------------------ccCcc-eEEEEcCCCCEEEEecCcccEEEEEec--cccee-----------
Confidence 55322111 01111 223667889999999998888765422 11110
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecC
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELG 255 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~ 255 (927)
.-......+..+.|+ .++.+++.....|++.+......+. +..
T Consensus 142 ------------------------~~~~~~~e~ne~~w~----------~~nd~Fflt~GlG~v~ILsypsLkpv~si~A 187 (313)
T KOG1407|consen 142 ------------------------NEEQFKFEVNEISWN----------NSNDLFFLTNGLGCVEILSYPSLKPVQSIKA 187 (313)
T ss_pred ------------------------ehhcccceeeeeeec----------CCCCEEEEecCCceEEEEecccccccccccc
Confidence 011223345555554 3444444444455555544333222 367
Q ss_pred CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
|..-. |+.|+|+|+++|+|++|..|.+||++. --+.+.+.. +.-||+.++||.||++||+|++|..|-|=
T Consensus 188 H~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 188 HPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR--------LDWPVRTLSFSHDGRMLASASEDHFIDIA 258 (313)
T ss_pred CCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc--------ccCceEEEEeccCcceeeccCccceEEeE
Confidence 77666 999999999999999999999999987 778888888 88899999999999999999999999999
Q ss_pred EccCCeeEEEeccccccceecceecCCC
Q 002405 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
++.+|..+..++- .++..+++|+|..
T Consensus 259 ~vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 259 EVETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred ecccCCeEEEeec--cCCceeEEecCCC
Confidence 9999887776653 4566777887775
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.5e-20 Score=175.37 Aligned_cols=234 Identities=15% Similarity=0.186 Sum_probs=193.8
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
..++++|..+.| .-||++.+++..|.++++|+...+..+ .||...| .++.+.|...+|+|+.|..|
T Consensus 14 ~~~qgaV~avry----------N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 14 DCAQGAVRAVRY----------NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccccceEEEEE----------ccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 345667766655 789999999999999999998877554 7999999 99999999999999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC--eeEEEeccccccceeccee
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~s~~~ 358 (927)
.+||+.+ ++..+++.+ |.+.|+.++|+-+...+++|+.|.++++||-.+. ++++.+... ...|.++..
T Consensus 84 ~vwDV~T-Gkv~Rr~rg--------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v 153 (307)
T KOG0316|consen 84 QVWDVNT-GKVDRRFRG--------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDV 153 (307)
T ss_pred EEEEccc-Ceeeeeccc--------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEe
Confidence 9999999 999999999 9999999999999999999999999999998653 567777766 677888776
Q ss_pred cCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
... .++.|+ +.+.+++..+++..-.-+|+-.-+.++. ++..+.++.|+++++-|-.+|+
T Consensus 154 ~~h------eIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk----------- 216 (307)
T KOG0316|consen 154 AEH------EIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK----------- 216 (307)
T ss_pred ccc------EEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH-----------
Confidence 543 344454 8999999998887776676555566666 8888999999999987654444
Q ss_pred CcceEEEeecCcccccCCCce--EEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 435 DELKILHLNLPVSYISQNWPV--QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I--~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+...|.||...= ...+++....++++|++||.+ +||+....
T Consensus 217 ---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 217 ---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 377889987542 346888889999999999999 99987654
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.2e-20 Score=177.97 Aligned_cols=197 Identities=14% Similarity=0.218 Sum_probs=165.4
Q ss_pred CCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEE
Q 002405 256 SGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLT 332 (927)
Q Consensus 256 h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~ 332 (927)
-.+.+ .++||++ ...+++++.||++++||......+++.++. |...|.++.|++ +++.+++++.|++||
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------H~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--------HKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--------hhhheEEeccccccceeEEeeccCCceE
Confidence 46777 9999996 467888999999999998776678888888 999999999998 677888889999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec----ccee
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCC 405 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~ 405 (927)
+|+..-+.-++|+.+| .+.|...+|+|..+ ..+++.+ +.++||.+.....+.+..|...+++.++ -..+
T Consensus 131 LW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred eecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999988899999998 88899999999863 4555544 8999998764444457889989988888 3468
Q ss_pred eecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccCC
Q 002405 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd-G~~la~ag~dg~i-~wd~~s~ 483 (927)
+||+.|+.++.||+..-... ...+.+|...|+.+.|||. ...||+|+.|-++ +||...+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~p-------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTP-------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EecCCCceEEEEehhhcccc-------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 99999999999999865541 2456799999999999997 5689999999999 9998643
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.5e-19 Score=198.44 Aligned_cols=230 Identities=14% Similarity=0.161 Sum_probs=187.5
Q ss_pred cCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cC-CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcce
Q 002405 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (927)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~-h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~ 292 (927)
......+..+++|+.+++|..++.+.+||....+.. .+ |...| |++|+ ...+.+|+.||.|..+|+.......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 344566777999999999999999999998765443 45 88889 99999 7789999999999999998733334
Q ss_pred EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc
Q 002405 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
.++.+ |...|..++|++||++||+|+.|+.+.|||.....+..++.+| .+.|.+++|+|-.. ..|++|
T Consensus 295 ~~~~~--------H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA~awcP~q~---~lLAsG 362 (484)
T KOG0305|consen 295 STLQG--------HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKALAWCPWQS---GLLATG 362 (484)
T ss_pred hhhhc--------ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeEeeeCCCcc---CceEEc
Confidence 44666 9999999999999999999999999999999888888899888 89999999999863 677777
Q ss_pred c-----eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecc--cCCCeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 373 T-----SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRG--VSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 373 ~-----~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s--~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
. ++++|+..++..+..... ..+|..+.+ .+.++++. .+..+.+|...+-+.
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~------------------ 423 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL------------------ 423 (484)
T ss_pred CCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce------------------
Confidence 6 899999999988776643 456655544 44455433 344677887654322
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
...+.+|...|.++++||||..+++|+.|.++ +|++-.
T Consensus 424 --~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 424 --VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred --eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 56778999999999999999999999999999 998744
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=3.3e-19 Score=205.08 Aligned_cols=234 Identities=16% Similarity=0.204 Sum_probs=175.4
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecc---------------cce------ecCCCCeE-EEE
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------------IDK------ELGSGDAV-CAS 263 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~---------------~~~------~~~h~~~v-~v~ 263 (927)
.|.+.|.|+-| ++||+++|+|++|.-+.+|+... .+. +.+|..-| .++
T Consensus 67 ~h~~sv~CVR~----------S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 67 DHDGSVNCVRF----------SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred cccCceeEEEE----------CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 34555666544 78888888888888777776541 011 16899888 999
Q ss_pred EcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEE
Q 002405 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS 343 (927)
Q Consensus 264 ~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~ 343 (927)
|+|++.+||+++.|++|.+|+..+ .+.+.++.+ |.+.|..+.|.|-|++||+-++|++++||++..-.+.+
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~--------H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRG--------HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred cCCCccEEEEecccceEEEEcccc-ceeeeeeec--------ccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 999999999999999999999998 688899999 99999999999999999999999999999986644555
Q ss_pred Eeccc-----cccceecceecCCCCCCcccccccc-------eeEEEcCCCceEEEEEcCCcceE--EEEec------cc
Q 002405 344 TIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERV--LIFSF------GK 403 (927)
Q Consensus 344 ~l~~~-----~~~~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~------~~ 403 (927)
++.++ +...+.-+.|||+| ++++++. ++.+-+-++.+.-..+-||..++ +.|.+ .+
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeccchhhCCCcceeeecccCCCc----CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 55432 12346667899999 7776543 45555555555555667888776 55554 22
Q ss_pred ------------eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcc--cccCCCceEEEEEccCCCEEEE
Q 002405 404 ------------CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAV 469 (927)
Q Consensus 404 ------------~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~I~~va~spdG~~la~ 469 (927)
.+++||.|+++.+|.... .| |-. ..-.+..|..++|||||..|.+
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~R-------------------Pl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PR-------------------PLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCC--CC-------------------chhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 467888899999888532 21 211 1123457999999999999999
Q ss_pred EeCCceE-EEEccCC
Q 002405 470 AGLHGLI-LYDIRQK 483 (927)
Q Consensus 470 ag~dg~i-~wd~~s~ 483 (927)
+|.||++ +..+..+
T Consensus 343 cS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 343 CSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCeEEEEEcchH
Confidence 9999999 8877543
No 78
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=8.9e-18 Score=183.64 Aligned_cols=456 Identities=14% Similarity=0.171 Sum_probs=262.6
Q ss_pred eEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCcc---EEEEEecCcEEEEEEEEecCceeecCCC
Q 002405 32 GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGGK 108 (927)
Q Consensus 32 ~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~---~Lav~t~dg~l~i~~l~~~~~~~~~~~~ 108 (927)
.++|.+....|.+|+-.+. ....... .+.+++.|+.|-|+++ .+++|..||.|++|.+.........
T Consensus 26 ~~vafGa~~~Iav~dp~k~-~i~t~l~------GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~--- 95 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKI-LIVTTLD------GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY--- 95 (764)
T ss_pred ceEEecCCceEEEeCcccc-eeEEecc------CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE---
Confidence 3677778889999998633 1122111 2457889999999998 8999999999999999832211000
Q ss_pred CCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCC
Q 002405 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (927)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 188 (927)
.+++....+.|+......+.+..+++.+.+|+-++.. -.- .+..+.. .
T Consensus 96 ------------------~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e--~~~-----~~~~rf~-----~-- 143 (764)
T KOG1063|consen 96 ------------------TIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDE--VFL-----LAVLRFE-----I-- 143 (764)
T ss_pred ------------------eecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCc--eee-----ehheehh-----h--
Confidence 0112222333443323323333678888775432111 000 0000000 0
Q ss_pred CCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe-CCc-EEEEeeecCccceeeeccc-----ceecCCCCeE-
Q 002405 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQ-LMSCSVSKKGLKLAEFIKI-----DKELGSGDAV- 260 (927)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~-~~~~~~~d~~~~~w~~~~~-----~~~~~h~~~v- 260 (927)
......+++ +.+ .+. ++++++.+..+.+...... ..+.||.+.|
T Consensus 144 ------------------k~~ipLcL~----------~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIr 195 (764)
T KOG1063|consen 144 ------------------KEAIPLCLA----------ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIR 195 (764)
T ss_pred ------------------hhHhhHHHh----------hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhh
Confidence 000001111 122 222 2222223333333222211 1137999999
Q ss_pred EEEEcCCCc---EEEEEecCCeEEEEeccCCC---cc-------------e-EEEeeecC-----CCCCCCCCCeeEEEE
Q 002405 261 CASIAPEQQ---ILAVGTRRGVVELYDLAESA---SL-------------I-RTVSLYDW-----GYSMDDTGPVSCIAW 315 (927)
Q Consensus 261 ~v~~sp~~~---~la~g~~Dg~V~vwd~~~~~---~~-------------~-~~l~~~~~-----~~~~~h~~~V~~l~~ 315 (927)
+++|+..+. +||+||+|..||||.+.-.+ +. . ..+....+ ....+|.+.|.++.|
T Consensus 196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W 275 (764)
T KOG1063|consen 196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW 275 (764)
T ss_pred hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence 999998655 89999999999999985421 00 0 00100011 122379999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEEccCC--eeEEEec--c--ccccceecceecCCCCCCcccccccc---eeEEEcCCCce--
Q 002405 316 TPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIR--Q--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-- 384 (927)
Q Consensus 316 spdg~~Lasg~~Dg~v~vW~~~~~--~~~~~l~--~--~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~-- 384 (927)
+|++..|.+++.|.++.+|..... --+...+ + +....+....|+|++ ..+++-+ ...+|......
T Consensus 276 ~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt~d~~~w 351 (764)
T KOG1063|consen 276 HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKTKDKTFW 351 (764)
T ss_pred ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEeccCccce
Confidence 999999999999999999987543 3333333 1 113447778888887 4443322 55667633322
Q ss_pred -EEEEEcCCcceEEEEe--c-cceeeecccCCCeeeeeee--------------ec---------CCeEEEeecCCC---
Q 002405 385 -LYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVI--------------YG---------EDRLLVVQSEDT--- 434 (927)
Q Consensus 385 -l~~~~~~~~~~v~~~~--~-~~~~~s~s~d~~~~~w~~~--------------~~---------~~~~~~~~~~~~--- 434 (927)
......||.+.|..+. + |+.+.|+|.|.|-+++.-- +| ..++.++.+.+.
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 2233467888884444 4 8888899988887764321 00 001222222210
Q ss_pred -----C----------------------c--------------c-----------eEE----------------------
Q 002405 435 -----D----------------------E--------------L-----------KIL---------------------- 440 (927)
Q Consensus 435 -----~----------------------~--------------~-----------~w~---------------------- 440 (927)
+ + . .|.
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 0 0 0 010
Q ss_pred EeecC--cccccCCCceEEEEEccCCCEEEEEeCCc-----eE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEE
Q 002405 441 HLNLP--VSYISQNWPVQHVAASKDGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIV 510 (927)
Q Consensus 441 ~~~~~--~~~~~~~~~I~~va~spdG~~la~ag~dg-----~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li 510 (927)
+..-| .++.||...|.+++.||+|+.+|++++.. .| +|+.. .|+.-+ ..+.+++.|+.+.|. +.+|+
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~--~W~~~~-~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA--NWLQVQ-ELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc--chhhhh-eecccceEEEEEEECCCCcEEE
Confidence 00012 35679999999999999999999998864 33 77654 466544 445667889999886 56888
Q ss_pred EEEeecCCCeEEEEEeeCCC--CCccceeEEEecCCccEE----EEccCCEEEEEEcCCeEEEEEEE
Q 002405 511 VCNYIDSSNTYELLFYPRYH--LDQSSLLCRKSLLAKPIV----MDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 511 ~~~~~~~~~~~~l~l~~~~~--l~~~~~~~~~~~~~~~~~----~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
++++ +..+.+|...+ .+...+.... +...+. .+|++-++++++-|.++++|...
T Consensus 589 svsR-----DRt~sl~~~~~~~~~e~~fa~~k--~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 589 SVSR-----DRTVSLYEVQEDIKDEFRFACLK--AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred Eeec-----CceEEeeeeecccchhhhhcccc--ccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 8744 35677887741 1211111111 122333 36777789999999999999875
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.6e-20 Score=200.73 Aligned_cols=222 Identities=17% Similarity=0.214 Sum_probs=186.1
Q ss_pred eCCcEEEEeeecCccceeeecccce---------ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEEe
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~---------~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~ 296 (927)
|+|+++++++.|+.+++|+...... ...|.+.| .++...+++.|+++|.|.+|++|+....+ -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 6788999999999999998653221 25799999 99999999999999999999999998733 5667777
Q ss_pred eecCCCCCCCCCCeeEEEE-CCCCCEEEEEEcCCcEEEEEccCC--eeEE--------Eec-cccccceecceecCCCCC
Q 002405 297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGC--RLMS--------TIR-QISLSSISSPIVKPNQDC 364 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~-spdg~~Lasg~~Dg~v~vW~~~~~--~~~~--------~l~-~~~~~~v~s~~~sp~~~~ 364 (927)
. |+..|.|++. -++...+|+|+-|+.|++||+..+ +++. ++. ++ ..+|.+++-.+.+
T Consensus 115 ~--------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~t~-- 183 (735)
T KOG0308|consen 115 T--------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQTG-- 183 (735)
T ss_pred c--------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCCcc--
Confidence 7 9999999999 889999999999999999999876 2332 333 33 5677888887777
Q ss_pred Ccccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcce
Q 002405 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (927)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (927)
..+++|+ .+++|++.+.+-++.+.||.+.|.++-. |..++|+|.|++|++|++.+...
T Consensus 184 --t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-------------- 247 (735)
T KOG0308|consen 184 --TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-------------- 247 (735)
T ss_pred --eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce--------------
Confidence 7788887 7889999999888888999998844433 99999999999999999987665
Q ss_pred EEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
..++..|...|+++..+|+=+++.+||+||.+ .=|+.+
T Consensus 248 ------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 ------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 66788999999999999999999999999999 555544
No 80
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=1.8e-18 Score=198.08 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=161.4
Q ss_pred ecCccceeeecccc---eecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCc-------ceEEEeeecCCCCCC
Q 002405 238 SKKGLKLAEFIKID---KELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMD 305 (927)
Q Consensus 238 ~d~~~~~w~~~~~~---~~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~-------~~~~l~~~~~~~~~~ 305 (927)
.++.+++|+..... .+.+|.+.| +++|+|+ +.+||+|+.||+|+|||+.+.+. .+..+.+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-------- 123 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-------- 123 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--------
Confidence 34567788754322 237899999 9999997 78999999999999999975222 2234455
Q ss_pred CCCCeeEEEECCCCCE-EEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCC
Q 002405 306 DTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (927)
Q Consensus 306 h~~~V~~l~~spdg~~-Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (927)
|.+.|.+++|+|++.. ||+|+.|++|+|||+.+++...++. + ...|.+++|+|++ ..+++++ ++++|++.
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecCCEEEEEECC
Confidence 9999999999999875 5799999999999999888777765 3 4679999999998 7777654 89999999
Q ss_pred CceEEEEEcCCcceE-----EE--Eec-cceeeecccCC----CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc
Q 002405 382 GYRLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (927)
Q Consensus 382 ~~~l~~~~~~~~~~v-----~~--~~~-~~~~~s~s~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (927)
+++++....+|.+.+ +. ++. ++.+++++.|+ ++++||+......+.. ....
T Consensus 198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------------~~ld 260 (568)
T PTZ00420 198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-----------------MSID 260 (568)
T ss_pred CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-----------------EEec
Confidence 999988888887643 11 223 56788877764 6999998754431100 0112
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 450 ~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
.+.+.+.....+++|.++++|+.|+.+ +|++..+.
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 233444444446679999999999999 99998764
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=5.3e-19 Score=203.42 Aligned_cols=260 Identities=15% Similarity=0.231 Sum_probs=188.4
Q ss_pred EEEEEeCCcEEEEee--ecCccceeeeccc------------ce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEe
Q 002405 223 LFVLYSNGQLMSCSV--SKKGLKLAEFIKI------------DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~--~d~~~~~w~~~~~------------~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd 284 (927)
.+.++|||..+++++ .|+++.+|+.... +. ...|...| |+.|+|||++||+|++|+.|.||+
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE 97 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence 455799999999999 7888888975321 00 15689999 999999999999999999999999
Q ss_pred ccC------CC-----------cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 285 LAE------SA-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 285 ~~~------~~-----------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
... .+ +....+.+ |.+.|..++|+||+.+||+++.|++|.||+..+..+..++++
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~--------H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRG--------HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEec--------CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 872 01 13345555 999999999999999999999999999999998899999999
Q ss_pred ccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcc------eEEEEec---cceeeeccc-CCCe
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE------RVLIFSF---GKCCLNRGV-SGMT 414 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~------~v~~~~~---~~~~~s~s~-d~~~ 414 (927)
| .+-|..+.|.|.| +++++-+ ++++|......+.....++-. .+..+++ |+++++... .+..
T Consensus 170 H-~s~VKGvs~DP~G----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 170 H-QSLVKGVSWDPIG----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred c-cccccceEECCcc----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 9 8889999999999 8988776 999999877777666655432 3344444 777776542 1111
Q ss_pred eeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC-----CC------------EEEEEeCCceE-
Q 002405 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-----GM------------FLAVAGLHGLI- 476 (927)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd-----G~------------~la~ag~dg~i- 476 (927)
..-.+.+.+ .|. .-..+.||..|+.+++|+|. -+ .+|+||+|+.+
T Consensus 245 ~~~~IieR~--------------tWk---~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 245 STIAIIERG--------------TWK---VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred ceeEEEecC--------------Cce---eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 111111111 122 23467899999999999982 11 68999999999
Q ss_pred EEEccCCcEEeeCCccceeeeEEEEEEeeCC--EEEEEEe
Q 002405 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNY 514 (927)
Q Consensus 477 ~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~--~li~~~~ 514 (927)
+|+....| .+| ...+--.-.+..|+|..+ .|.+|.+
T Consensus 308 VW~T~~~R-Pl~-vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 308 VWNTALPR-PLF-VIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred EEecCCCC-chh-hhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 99985544 222 111111123779999843 4555533
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=202.21 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=169.4
Q ss_pred CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC---------c-------------c---eE-EEeee--------c
Q 002405 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA---------S-------------L---IR-TVSLY--------D 299 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~---------~-------------~---~~-~l~~~--------~ 299 (927)
.|.++| ++.||+||++||+|++||.||||.+.... . + .. ...+. +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999 99999999999999999999999985400 0 0 00 00000 0
Q ss_pred -----CC------------CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 300 -----WG------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 300 -----~~------------~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+ .-.+|++.|.+++||.+ ++|.+++.|+|||+|++....|++++. | .+.|++++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-H-ndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-H-NDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-c-CCeeEEEEecccC
Confidence 00 01289999999999976 588899999999999999989999886 3 7889999999986
Q ss_pred CCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
+ . +++|||.|+.+++|.+....- ..|
T Consensus 422 D---r------------------------------------yFiSGSLD~KvRiWsI~d~~V------------v~W--- 447 (712)
T KOG0283|consen 422 D---R------------------------------------YFISGSLDGKVRLWSISDKKV------------VDW--- 447 (712)
T ss_pred C---C------------------------------------cEeecccccceEEeecCcCee------------Eee---
Confidence 2 2 345667777777777643221 001
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCC------ccceeeeEEEEEEee---CCEEEEE
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD------ITQEQKIQSKGLLWL---GKIIVVC 512 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~------~~~e~~~~v~~~~W~---~~~li~~ 512 (927)
..-..-|++++|+|||++.++|+-+|.. +|++...+...-.. ....+ -.|+|+... .+-+++.
T Consensus 448 ------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~-~rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 448 ------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG-KRITGLQFFPGDPDEVLVT 520 (712)
T ss_pred ------hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC-ceeeeeEecCCCCCeEEEe
Confidence 1112468999999999999999999999 99987765432111 11111 258898886 2324443
Q ss_pred EeecCCCeEEEEEeeCCCCCccceeEEEe----cCCc-cEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 513 NYIDSSNTYELLFYPRYHLDQSSLLCRKS----LLAK-PIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 513 ~~~~~~~~~~l~l~~~~~l~~~~~~~~~~----~~~~-~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+++..||+|+.. ...+++++. ..++ ...++.+|.+++.++.|.-|.+|++.
T Consensus 521 -----SnDSrIRI~d~~---~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 -----SNDSRIRIYDGR---DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred -----cCCCceEEEecc---chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 366789999872 012222211 1122 23567789999999999999999885
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=5.4e-18 Score=188.84 Aligned_cols=379 Identities=13% Similarity=0.130 Sum_probs=243.6
Q ss_pred EEec---CeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 002405 27 FKVN---NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (927)
Q Consensus 27 fs~d---g~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (927)
+.|+ ++.+....++.++||+++ .+..+..+.+-. ..++++.=+|-=..+|+|+.+|.|.|+++..++...
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~------s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEFF------SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEec-cCcEEEEecccc------cceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 4455 455555678999999996 666666665432 456788889988899999999999999998765321
Q ss_pred ecCCCCCCCccceeeeEEeecccccccccceEEEeec--cCC-eEEEEecCCcEEEEecCCccccceeecccCCCCcccc
Q 002405 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNK-HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (927)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~-~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~ 180 (927)
. ++..++.|++++. ||. .+++|+.+|.+-.|+.+.......... .|...+.
T Consensus 239 s-----------------------Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n---ah~~sv~ 292 (910)
T KOG1539|consen 239 S-----------------------FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN---AHYGSVT 292 (910)
T ss_pred E-----------------------EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec---cccCCcc
Confidence 1 1233456665543 454 466677789999887775443222111 1212222
Q ss_pred cccccCCCCCccccCCCceecccc--------------cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec-------
Q 002405 181 LSHHFPSNGLASVDTSGAFVSDHK--------------FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK------- 239 (927)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~--------------~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d------- 239 (927)
..-|-.++-+.......+..+.+. .+|..+-.++.|. ...|..+.+.+.|
T Consensus 293 ~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy---------~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 293 GATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY---------GSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred cceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee---------ccCcEEEEecccCcchhhhh
Confidence 222222211111110001111111 1233333333332 1222222222222
Q ss_pred ----------------------------------------------------------Cccceeeecccc---eecCCC-
Q 002405 240 ----------------------------------------------------------KGLKLAEFIKID---KELGSG- 257 (927)
Q Consensus 240 ----------------------------------------------------------~~~~~w~~~~~~---~~~~h~- 257 (927)
.....|+..+.. -...+.
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~ 443 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR 443 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence 223334332211 001222
Q ss_pred -----CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 258 -----DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 258 -----~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
..+ ++++++-|++...|+..|+|.+|+++. |-....+ +.++.|.++|+.++...-++.+++++.+|-+
T Consensus 444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf-----~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSF-----GDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred ccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeeccc-----ccCccccCceeEEEecCCCceEEEccCcceE
Confidence 334 999999999999999999999999987 5433333 2344599999999998889999999999999
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---ccee
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (927)
+.||..+..+..+++-. .++..+.++... ..++.+. .+++.|..+.++.+.+.||.++|..+.| |+.+
T Consensus 518 kfw~f~~k~l~~~l~l~--~~~~~iv~hr~s----~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLG--SSITGIVYHRVS----DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred EEEecCCcceeeeeccC--CCcceeeeeehh----hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 99999988888777643 345555555544 4444333 8899999999999999999999966655 9999
Q ss_pred eecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE--EEEc
Q 002405 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDI 480 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i--~wd~ 480 (927)
++++.|+++++||+.++.. ...+ .-..|..+++|||+|.+||++..|+.- +|.-
T Consensus 592 isasmD~tIr~wDlpt~~l--------------------ID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTL--------------------IDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEeecCCcEEEEeccCcce--------------------eeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999876653 1111 224578899999999999999888443 7753
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=7.4e-20 Score=188.74 Aligned_cols=261 Identities=15% Similarity=0.191 Sum_probs=197.1
Q ss_pred EEeCCcEEEEeeecCccceeeecccc-----eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~-----~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+.++...+++++.|..+++|+....+ .+.|..+.+ .+.|.++++.+..++.|+.+++|+++. .+...++.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsG-- 259 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTLSG-- 259 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhhcc--
Confidence 46777889999999999999875443 125666778 999999999999999999999999998 888899999
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (927)
|++.|+++.|.-....+++|+.|.+++.||+....|..+.-. .+.++.+..+ ...++||- +++
T Consensus 260 ------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~------~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 260 ------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS------ISDVISGHFDKKVR 325 (459)
T ss_pred ------cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec------ceeeeecccccceE
Confidence 999999999998888899999999999999988777665432 2233333332 24455665 899
Q ss_pred EEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 377 QWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
+||..+..+......+. .| +.+++ +..+.+.+.|.++++.|+...+-+.. ...+.-..+|.
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~--------------~sA~g~k~asD- 389 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT--------------FSAEGFKCASD- 389 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEE--------------eeccccccccc-
Confidence 99999988887776654 77 45555 77888889999999998765443211 11123334555
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEe
Q 002405 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFY 526 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~ 526 (927)
.+.+.|||||.|+|+||.||.+ +|++.+++..........+. .+..+.|. |.+++++ +.+..+++|
T Consensus 390 -wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~sG~~Llsa-----dk~~~v~lW 458 (459)
T KOG0288|consen 390 -WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPSGSGLLSA-----DKQKAVTLW 458 (459)
T ss_pred -cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCCCchhhcc-----cCCcceEec
Confidence 5679999999999999999999 99999998765444333332 47788886 6677766 334455555
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=4e-19 Score=187.61 Aligned_cols=287 Identities=10% Similarity=0.085 Sum_probs=187.8
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEEEEecCcee-ecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEE
Q 002405 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (927)
Q Consensus 70 ~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~ 148 (927)
+.++++-|.|.++++|+-|-++++||...-.... .+..- .+...+.......++.++.|++.
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-----------------~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-----------------QPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhcc-----------------CcccccccceeeecCCCCeEEEE
Confidence 5689999999999999999999999986211110 11000 00111111223445667888888
Q ss_pred ecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe
Q 002405 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (927)
Q Consensus 149 ~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~ 228 (927)
+......+++-++.....+. -+.|.. .+ -....+|-..+++-+|+|.
T Consensus 233 sg~aqakl~DRdG~~~~e~~-----------------KGDQYI--~D-----m~nTKGHia~lt~g~whP~--------- 279 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFS-----------------KGDQYI--RD-----MYNTKGHIAELTCGCWHPD--------- 279 (641)
T ss_pred ecCcceeEEccCCceeeeee-----------------ccchhh--hh-----hhccCCceeeeeccccccC---------
Confidence 88888888877765543321 111100 00 0112356666777777542
Q ss_pred CCcEEEEeeecCccceeeeccccee---------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEEee
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSL 297 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~---------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~~ 297 (927)
+...+++++.|+++++|+....+.. .+..-.+ +++|||+|++||+|+.||.|.+|+..... ......+.
T Consensus 280 ~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 280 NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee
Confidence 2346788899999999998754321 1222233 89999999999999999999999975411 22222222
Q ss_pred ecCCCCCCCCC--CeeEEEECCCCCEEEEEEcCCcEEEEEccCC-eeEEEeccc-cccceecceecCCCCCCcccccccc
Q 002405 298 YDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 298 ~~~~~~~~h~~--~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~-~~~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
+|.+ .|+||+||+||++|++-+.|++++|||+... +++.+..+- ..-.-+.+.|||+. +.+++|.
T Consensus 360 -------AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~TGt 428 (641)
T KOG0772|consen 360 -------AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILTGT 428 (641)
T ss_pred -------ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEecc
Confidence 2877 8999999999999999999999999999643 344433331 12335678999998 7777775
Q ss_pred ---------eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeee
Q 002405 374 ---------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYAR 417 (927)
Q Consensus 374 ---------~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w 417 (927)
+..+++..+.+.+..+.-....|+...+ -+.+..|+.||+++++
T Consensus 429 S~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 429 SAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 4667777777776665444555654444 5677788888888763
No 86
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=1.5e-17 Score=175.49 Aligned_cols=374 Identities=15% Similarity=0.157 Sum_probs=235.2
Q ss_pred EEEEEecC-eEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 002405 24 IIYFKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (927)
Q Consensus 24 iv~fs~dg-~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~ 102 (927)
...|-|-+ .++++.+.+.+..|+.+ .+.... -...-+. .+...+.+++|.++|+ .++|.++|.+.||+.....-.
T Consensus 205 ~a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~k-~~~~fek-~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCGKGHLYFWTLR-GGSLVK-RQGIFEK-REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred EEEeccCCCcEEEEeCCceEEEEEcc-CCceEE-Eeecccc-ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 35788875 58888899999999886 332211 1111111 1235678999999986 568999999999987432211
Q ss_pred eecCCCCC-------------------CCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCcc
Q 002405 103 IQIGGKQP-------------------SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (927)
Q Consensus 103 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~ 163 (927)
.+...|+. .....|+-.+.....+.+....+.++.++..+..+++|+..+.|..-+ .
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt----~ 356 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT----L 356 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee----e
Confidence 11112211 112233322222223344556678888888877799998887775432 2
Q ss_pred ccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc
Q 002405 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK 243 (927)
Q Consensus 164 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~ 243 (927)
...+++ ...+|..... -++..|+...+++++.|+.+.
T Consensus 357 ~~~f~~---------------------------------~v~gh~delw----------gla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 357 ENGFTL---------------------------------TVQGHGDELW----------GLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred cCCceE---------------------------------EEEeccccee----------eEEcCCChhheeeccCcceEE
Confidence 222211 0112222222 245678899999999999999
Q ss_pred eeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEE
Q 002405 244 LAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF 322 (927)
Q Consensus 244 ~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~L 322 (927)
+|+..+.+--.--.++. |+.|+|.| .+|.|+..|...|.|.++ . .+-+++. ...++++|+|||||.+|
T Consensus 394 lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~-~lv~~~~--------d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 394 LWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-Q-DLVTIHT--------DNEQLSVVRYSPDGAFL 462 (626)
T ss_pred EccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc-c-eeEEEEe--------cCCceEEEEEcCCCCEE
Confidence 99944432113345666 99999999 999999999999999876 3 3334444 47899999999999999
Q ss_pred EEEEcCCcEEEEEcc-CCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcC-------
Q 002405 323 AVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG------- 391 (927)
Q Consensus 323 asg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~------- 391 (927)
|+|+.|+.|.||.+. +++......-++.+.++.+.||+|+ +++.+-+ .++.|.+..-......+.
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~ 538 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYT 538 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCcccceecceeeeeeE
Confidence 999999999999995 4445544444334889999999998 7776554 888996654332221110
Q ss_pred -----------CcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE
Q 002405 392 -----------SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (927)
Q Consensus 392 -----------~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (927)
+...+ .+-+- .+.+++|...+.++++..--...+ -....|.+|..-|.+
T Consensus 539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r-----------------A~~he~~ghs~~vt~ 601 (626)
T KOG2106|consen 539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR-----------------APSHEYGGHSSHVTN 601 (626)
T ss_pred EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc-----------------ccceeeccccceeEE
Confidence 00001 11111 222233333333333221111100 012367899999999
Q ss_pred EEEccCCCEEEEEeCCceE-EEEc
Q 002405 458 VAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 458 va~spdG~~la~ag~dg~i-~wd~ 480 (927)
|+|+-+...+.+.|.|..+ .|++
T Consensus 602 V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 602 VAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEeeCCceEEecCCCceEEEEEe
Confidence 9999888888888899988 8875
No 87
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=1.5e-19 Score=190.21 Aligned_cols=257 Identities=13% Similarity=0.149 Sum_probs=186.3
Q ss_pred ceEEEEEe-cCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhh-hcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 22 QQIIYFKV-NNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 22 ~~iv~fs~-dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
...+.|.| .+-||.+++ |+.|+||++...+. +.| ... +.-++.+++|+++|+.+.+++-|+++++||+++
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~----~lr---tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR----CLR---TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcc----eeh---hhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 45577888 688888886 89999999962122 222 222 334567899999999999999999999999998
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEEEecCCcEEEEecCCccccceeecccCCCCc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~ 177 (927)
+.....+... .-.....+.+++ ..+++|+.|+.|+.|+.. .+.-.
T Consensus 290 G~~~~~f~~~----------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR--s~kvv---------- 335 (503)
T KOG0282|consen 290 GQVLSRFHLD----------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR--SGKVV---------- 335 (503)
T ss_pred ceEEEEEecC----------------------CCceeeecCCCCCcEEEEecCCCcEEEEecc--chHHH----------
Confidence 7643322100 000112345566 678999999999875433 22111
Q ss_pred ccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee----
Q 002405 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---- 253 (927)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---- 253 (927)
.....|-++|.++.| -++|+.++++++|+++++|+...+...
T Consensus 336 ------------------------qeYd~hLg~i~~i~F----------~~~g~rFissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 336 ------------------------QEYDRHLGAILDITF----------VDEGRRFISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred ------------------------HHHHhhhhheeeeEE----------ccCCceEeeeccCccEEEEEcCCCccchhhc
Confidence 112345566777665 799999999999999999998765332
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCC--CCeeEEEECCCCCEEEEEEcC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDT--GPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~--~~V~~l~~spdg~~Lasg~~D 328 (927)
..+.... |+..+|++.++|.-+-|..|.+|.+...- ...+.+++ |. |--..+.|||||.+|++|..|
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG--------h~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG--------HSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc--------eeccCceeeEEEcCCCCeEEeecCC
Confidence 1223445 89999999999999999999999975411 22334555 53 566789999999999999999
Q ss_pred CcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
|.+.+||..+.+++..++.| ...+..+.|+|..
T Consensus 454 G~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVE 486 (503)
T ss_pred ccEEEeechhhhhhhccccC-CcceEEEEecCCC
Confidence 99999999999999999988 6666666666654
No 88
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=1.7e-18 Score=197.61 Aligned_cols=197 Identities=13% Similarity=0.186 Sum_probs=151.3
Q ss_pred ccCCCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeecccc----------eecCCCCeE-EEEEcCCC-cE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQ-QI 270 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~~~----------~~~~h~~~v-~v~~sp~~-~~ 270 (927)
+.+|...|.++.| +| |++++++++.|+++++|+..... .+.+|...| +++|+|++ .+
T Consensus 71 l~GH~~~V~~v~f----------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 71 LLGQEGPIIDVAF----------NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140 (493)
T ss_pred EeCCCCCEEEEEE----------cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence 3567788888876 56 78889999999999999975431 237899999 99999985 69
Q ss_pred EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccc
Q 002405 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (927)
Q Consensus 271 la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~ 350 (927)
||+|+.|++|+|||+.+ +..+..+.. |.+.|.+++|+|||..||+|+.|++|++||+.++..+.++.+|..
T Consensus 141 LaSgs~DgtVrIWDl~t-g~~~~~l~~--------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 141 LASAGADMVVNVWDVER-GKAVEVIKC--------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred EEEEeCCCEEEEEECCC-CeEEEEEcC--------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence 99999999999999987 777777777 999999999999999999999999999999999888888888743
Q ss_pred cceecceecCCCCCCcccccc-c------ceeEEEcCCCce-EEEEEcCCc-ceE--EEEec-cceeeecc-cCCCeeee
Q 002405 351 SSISSPIVKPNQDCKYEPLMS-G------TSMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYAR 417 (927)
Q Consensus 351 ~~v~s~~~sp~~~~~~~~l~s-g------~~~~~W~~~~~~-l~~~~~~~~-~~v--~~~~~-~~~~~s~s-~d~~~~~w 417 (927)
..+..+.|.+++ ..+++ | .++++||..... .+.....+. ..+ ..++. ++.+++++ .|+.+++|
T Consensus 212 ~~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 212 AKSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred CcceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 334556777765 44443 2 169999987643 333332222 223 23444 66777766 59999999
Q ss_pred eeeecC
Q 002405 418 QVIYGE 423 (927)
Q Consensus 418 ~~~~~~ 423 (927)
++..+.
T Consensus 288 dl~~~~ 293 (493)
T PTZ00421 288 ELMNER 293 (493)
T ss_pred EeeCCc
Confidence 987543
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.2e-19 Score=184.75 Aligned_cols=286 Identities=14% Similarity=0.138 Sum_probs=211.7
Q ss_pred cceeeecccceecCCCCeE-EEEEcCCCcE-EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC
Q 002405 242 LKLAEFIKIDKELGSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (927)
Q Consensus 242 ~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~-la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg 319 (927)
.+-|+-.+........++| +++|||...+ +|+.+. -.|.+|+..+ ....+++.. ....|.++.|..||
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~-~~~~k~~sr--------Fk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT-RSVRKTFSR--------FKDVVYSVDFRSDG 80 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEEecc-cEEEEEecch-hhhhhhHHh--------hccceeEEEeecCC
Confidence 4445544332222223455 9999997544 555443 4689999876 455555555 57789999999999
Q ss_pred CEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE
Q 002405 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV 396 (927)
Q Consensus 320 ~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v 396 (927)
++||+|.+.|.|+|+|..+...+..+.+| ..++....|+|.+. ..+.+|+ .++.|+..+......+.+|.+.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~~~d~---t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFSPQDN---TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEecccCC---eEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 99999999999999997776667778888 89999999999872 4566666 78899999888766789999999
Q ss_pred EEEec----cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC
Q 002405 397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 397 ~~~~~----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~ 472 (927)
.+.++ ...++|||.|+++++||...... +..-..|.-||.++.+=|.|..+|+||.
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--------------------~v~elnhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--------------------RVVELNHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCc--------------------eeEEecCCCceeeEEEcCCCCEEEEcCC
Confidence 77766 34689999999999999876544 3344578899999999999999999998
Q ss_pred CceEEEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEE--
Q 002405 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD-- 550 (927)
Q Consensus 473 dg~i~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~-- 550 (927)
...-+||+.+|.-.......|.+.+.|-.+.=.+.-|++++ -+..+++|+.. +-.+++...+|++++.+.
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-----LD~~VKVfd~t---~~Kvv~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-----LDRHVKVFDTT---NYKVVHSWKYPGPVLSIAVS 288 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-----cccceEEEEcc---ceEEEEeeecccceeeEEec
Confidence 87669999977644332222444333333333457788773 44678899753 446788888999888665
Q ss_pred ccCCEEEEEEcCCeEEEEE
Q 002405 551 VYEDYILVTYRPFDVHIFH 569 (927)
Q Consensus 551 ~~~~~l~v~~~d~~i~l~~ 569 (927)
+.++.++++-.||.+.+=+
T Consensus 289 ~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred CCCceEEEecccceeeeeh
Confidence 5557788888888776643
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=2.7e-19 Score=177.76 Aligned_cols=279 Identities=13% Similarity=0.218 Sum_probs=195.1
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccC------C-----C------cceEEEeeecCCCCCCCCCCeeEEEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE------S-----A------SLIRTVSLYDWGYSMDDTGPVSCIAW 315 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~------~-----~------~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (927)
..|..++ +.+|||||.++|+|+.|..|+|.|++. . + ..++++-. |..+|+++.|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--------H~devn~l~F 180 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--------HVDEVNDLDF 180 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--------ccCcccceee
Confidence 5688889 999999999999999999999999962 0 0 13444544 9999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEEccCCe---eEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEE
Q 002405 316 TPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 316 spdg~~Lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~ 389 (927)
.|-...|++|+.|++|+++|..... .+..+.. ...|.++.|+|.| ++++.|. +.++++.++++++...
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsG----efllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSG----EFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCC----ceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999999986432 2333333 4679999999999 8887776 8999999999999876
Q ss_pred c---CCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccc-ccCC-CceEEEEEc
Q 002405 390 E---GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQN-WPVQHVAAS 461 (927)
Q Consensus 390 ~---~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~-~~I~~va~s 461 (927)
. +|.+.|.++.+ ++.-+|+|.||.+++||-..+.. ..++ ..|. ..|.+..|+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--------------------v~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--------------------VRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--------------------HHHHHhhcCCceeeeEEEc
Confidence 4 57778866655 88889999999999999554433 3333 2454 468999999
Q ss_pred cCCCEEEEEeCCceE-EEEccCCcEE-eeCCccceeeeEEE-EEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccce
Q 002405 462 KDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSK-GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSL 536 (927)
Q Consensus 462 pdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~v~-~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~ 536 (927)
.||+|+.+.|.|.++ +|.+.++|-- .+............ ...++ .++.+.- .....++..|+..+-+...
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p----DEas~slcsWdaRtadr~~- 389 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP----DEASNSLCSWDARTADRVA- 389 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcc----ccccCceeeccccchhhhh-
Confidence 999999999999999 9999998843 22111000000011 11121 3344432 1233455556542211111
Q ss_pred eEEEecCCc--cEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 537 LCRKSLLAK--PIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 537 ~~~~~~~~~--~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
++...+.+. -+..+|.+-.+++.+.|...+.|.-+
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 111112222 34567777778888999999999643
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=7.1e-19 Score=171.84 Aligned_cols=283 Identities=11% Similarity=0.103 Sum_probs=210.1
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+.||..++ -+.+|.+|.+|-+++.|.+..||--.+ |+.+-+..+ |+|.|+|++..-+.++|++|+.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~G--------HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDG--------HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecC--------CCceEEEEEecCCcceeeecccccee
Confidence 47899999 999999999999999999999998766 888899999 99999999999999999999999999
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCC----CCcccccccceeEEEcCC-------CceEEEEEcCCcceE--EE
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQD----CKYEPLMSGTSMMQWDEY-------GYRLYAIEEGSSERV--LI 398 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~----~~~~~l~sg~~~~~W~~~-------~~~l~~~~~~~~~~v--~~ 398 (927)
++||+.+|+++.+++. ...|..+.|++.+. +..+.+-..+.+-+++.. +.+++..+..+.+.+ ..
T Consensus 77 kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred EEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 9999999999999876 46789999999872 111111112255566655 445555555566666 44
Q ss_pred Eec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002405 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (927)
Q Consensus 399 ~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i- 476 (927)
+.+ ++.+++|..|+.+..||+.++..- ...-..|+..|+.+.+|||+.++++|+.|.+.
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~-------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTGKEL-------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccCcee-------------------eechhhhccccccccccCCcceEEecccCccce
Confidence 455 899999999999999999877552 34445677899999999999999999999999
Q ss_pred EEEccCCcE-EeeCCccceeeeEEEEEEeeCCEEEEEEe---------ecCCCeEEEEEeeC---CCCCccceeEEEecC
Q 002405 477 LYDIRQKKW-RVFGDITQEQKIQSKGLLWLGKIIVVCNY---------IDSSNTYELLFYPR---YHLDQSSLLCRKSLL 543 (927)
Q Consensus 477 ~wd~~s~~w-~~f~~~~~e~~~~v~~~~W~~~~li~~~~---------~~~~~~~~l~l~~~---~~l~~~~~~~~~~~~ 543 (927)
+||..+-.. |.|.. |..+++..+.-..+.+|.++. ..+.+.+|-|+|.. +.+.. ...+.-|
T Consensus 216 l~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr---vkGHFGP 289 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR---VKGHFGP 289 (327)
T ss_pred eeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc---ccccccC
Confidence 999987542 33332 222333344444444444321 11235566677655 11111 1123345
Q ss_pred CccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 544 AKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 544 ~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
-..+.+.|.|.....+..||.+++.++.
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEec
Confidence 5568899999999999999999998765
No 92
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.8e-17 Score=176.28 Aligned_cols=427 Identities=13% Similarity=0.156 Sum_probs=243.5
Q ss_pred ccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc-CCeEE
Q 002405 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHML 146 (927)
Q Consensus 68 G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~l~ 146 (927)
.+++++++|.+++.||++-++|+|.||++..+- ..+..+. ++.+..|.+++.. +.+|+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------~~~~vi~-----g~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------FLEPVIH-----GPEDRSIESLAWAEGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------eeeEEEe-----cCCCCceeeEEEccCCeEE
Confidence 467899999999999999999999999997421 1111111 1223344455444 67888
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
....+|.|.. ||.....+. .......+.|.+|+.+|.....+..
T Consensus 85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEEeCCccceEEee
Confidence 8888999876 443332221 1122345667777765544444444
Q ss_pred EeCCcEEEEeeecCccceeeecccceec-CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~~-~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
+.||-++.....-+.+. .+... -..+.+ +++|+|++..+|+||.||.|++||+.. +..++.....-.+...
T Consensus 129 cddGvl~~~s~~p~~I~------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKIT------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSK 201 (691)
T ss_pred cCCceEEEEecCCceEE------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccccccc
Confidence 44443322222211111 11111 224666 999999999999999999999999987 5444422111111111
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc-c--eeEEEcCC
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T--SMMQWDEY 381 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-~--~~~~W~~~ 381 (927)
...--|+++.|-.|| .||+|..-|+|+.||...+.++.+..-| .+.|.+++..+++ ..+.++ . ++..+...
T Consensus 202 ~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 202 REPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred CCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEEEEec
Confidence 123347777777665 6888988899999999999999888887 8889999998886 444444 3 44444443
Q ss_pred Cc-eEEEEE---cCCcceEEEEec-cceeeecccCCCeeeeeeeecCC---e--EEEeecC-------CCCcceE-----
Q 002405 382 GY-RLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGED---R--LLVVQSE-------DTDELKI----- 439 (927)
Q Consensus 382 ~~-~l~~~~---~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~---~--~~~~~~~-------~~~~~~w----- 439 (927)
+. +-|... ..|...+.++.. ...+.+|+.|.++.+-.....+. + .....+. ..-...|
T Consensus 276 ~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v 355 (691)
T KOG2048|consen 276 TNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGV 355 (691)
T ss_pred CCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccc
Confidence 32 223332 245555655554 55788899988776544332110 0 0000000 0001123
Q ss_pred ---EEeec-----------CcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCc-EE--eeCCccceeeeEEEEE
Q 002405 440 ---LHLNL-----------PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WR--VFGDITQEQKIQSKGL 502 (927)
Q Consensus 440 ---~~~~~-----------~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~-w~--~f~~~~~e~~~~v~~~ 502 (927)
..+.. ..-.......|.+.++||||+++|.+.-..+-+|.++... -+ ...+...+. .....+
T Consensus 356 ~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~-~~a~~i 434 (691)
T KOG2048|consen 356 DLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLAL-LDASAI 434 (691)
T ss_pred cceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhh-ccceee
Confidence 22111 1111223346899999999999999987777788776522 11 111111111 112223
Q ss_pred Ee--eCCEEEEEEeecCCCeEEEEEeeCC-----CCCccceeEEEecC-CccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 503 LW--LGKIIVVCNYIDSSNTYELLFYPRY-----HLDQSSLLCRKSLL-AKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 503 ~W--~~~~li~~~~~~~~~~~~l~l~~~~-----~l~~~~~~~~~~~~-~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
.. .++.++.+. . +..++..+..+ .+.. +.-+-..+ -..++.+++|++++++++.+.|.+|.++
T Consensus 435 ~ftid~~k~~~~s-~---~~~~le~~el~~ps~kel~~--~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~ 505 (691)
T KOG2048|consen 435 SFTIDKNKLFLVS-K---NIFSLEEFELETPSFKELKS--IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLE 505 (691)
T ss_pred EEEecCceEEEEe-c---ccceeEEEEecCcchhhhhc--cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcc
Confidence 33 355555553 1 22333333221 1111 00000111 1246778999999999999999999886
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.4e-18 Score=173.76 Aligned_cols=220 Identities=15% Similarity=0.254 Sum_probs=177.6
Q ss_pred eCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCc--EEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~--~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
-+|+++++|+.|.+|+++|..+.... ..|.+.+ ++.|.+... .|.+|++||.|.+|++.. -.++.++++
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~---- 125 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKA---- 125 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecc----
Confidence 47999999999999999998765443 6788888 999999876 899999999999999987 788899998
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc-cccc-eeEEEc
Q 002405 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT-SMMQWD 379 (927)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l-~sg~-~~~~W~ 379 (927)
|++.|+.++.+|.|++-.+-+.|+.+++|++-.|+.-..++-. ...+.+.|+|.| +.+ +.+. .+-+|.
T Consensus 126 ----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G----d~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 126 ----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG----DHFVVSGRNKIDIYQ 195 (362)
T ss_pred ----cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC----CEEEEEeccEEEEEe
Confidence 9999999999999999888899999999999776644433321 123448899888 533 3333 788899
Q ss_pred CCCceEEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE
Q 002405 380 EYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (927)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (927)
.+...++..... ..++.+..| +..+++|+.|+.+++||..... .+..+.+|...|..
T Consensus 196 ~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--------------------~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 196 LDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDT--------------------PLTEFLAHENRVKD 254 (362)
T ss_pred cccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCc--------------------cceeeecchhheee
Confidence 888877766544 245666666 7788999999999999854322 36778899999999
Q ss_pred EEE--ccCCCEEEEEeCCceE-EEEccCC
Q 002405 458 VAA--SKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 458 va~--spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
+.+ .|++.+|+++|.||.| +||+...
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 884 7889999999999999 9998654
No 94
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.7e-17 Score=181.40 Aligned_cols=430 Identities=13% Similarity=0.103 Sum_probs=261.5
Q ss_pred EEEEec-CeE-EEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhc-ccccEEEEcCCcc---EEEEEecCcEEEEEEEE
Q 002405 25 IYFKVN-NGL-LLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTK---LIAVVTSSLYLHIFKVQ 97 (927)
Q Consensus 25 v~fs~d-g~l-la~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wspDg~---~Lav~t~dg~l~i~~l~ 97 (927)
+++.++ +++ +|.++ +..+.|+... . .++.|-. .++.| ..+.+++|+.-+. +||+++.|.+||||.+.
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~-~----d~f~~v~-el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~ 224 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSS-A----DSFARVA-ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIV 224 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccC-C----cceeEEE-EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEE
Confidence 445554 443 44444 4456666552 1 1222221 12333 4466788877554 89999999999999997
Q ss_pred ecCcee----ecCCCCCCCcc----ceeeeEEeecccccccccceEEEee--ccCCeEEEEecCCcEEEEecCCccccce
Q 002405 98 ITEKSI----QIGGKQPSGLF----FIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAF 167 (927)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~l~v~~~dg~i~~~~w~~~~~~~~ 167 (927)
...... .........++ ...+.+..++...+.+++.-|.++. +.+..|+.++.|.++.+| ....+...
T Consensus 225 ~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW--~pd~~tGi 302 (764)
T KOG1063|consen 225 LGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIW--KPDENTGI 302 (764)
T ss_pred ecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEE--ecCCccce
Confidence 644211 00000011111 2223344444445567777777764 444568888889988764 43332110
Q ss_pred eecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeee
Q 002405 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (927)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~ 247 (927)
|.+ .. .+-.+..+..+-+.+.++|++..+++.+..|..++|..
T Consensus 303 -----------------Wv~-----------~v---------RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 303 -----------------WVD-----------VV---------RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred -----------------EEE-----------EE---------EeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 000 00 00011111111223445777777777777777777863
Q ss_pred ccccee------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC
Q 002405 248 IKIDKE------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (927)
Q Consensus 248 ~~~~~~------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~ 320 (927)
.....| .||.+.| .++|+|.|.+|.+.+.|.|-|+|.--.....-+.+...+ -|....+|++|-+...
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-----iHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-----IHGYDLTCLSFVNEDL 420 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc-----cccccceeeehccCCc
Confidence 333222 6999999 999999999999999999999987541111222222222 2888899999998667
Q ss_pred EEEEEEcCCcEEEEEccC----------C-----e-------eE------------------------------------
Q 002405 321 AFAVGWKSRGLTVWSVSG----------C-----R-------LM------------------------------------ 342 (927)
Q Consensus 321 ~Lasg~~Dg~v~vW~~~~----------~-----~-------~~------------------------------------ 342 (927)
.+++|.+.+.+|+++... + . .+
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 788888888999997621 0 0 00
Q ss_pred ------------------EEeccccccceecceecCCCCCCcccccccc--------eeEEEcCCCceEEEEEcCCcceE
Q 002405 343 ------------------STIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSERV 396 (927)
Q Consensus 343 ------------------~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--------~~~~W~~~~~~l~~~~~~~~~~v 396 (927)
+.|-|| ...|.+++.+|++ ..++|+. -+++|+..+-.....+.+|+-.|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV 575 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence 000122 3456777888887 7777665 67889887766666788999888
Q ss_pred EE--Eec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCC
Q 002405 397 LI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (927)
Q Consensus 397 ~~--~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d 473 (927)
.. |++ +++++++|.|.+..+|....+... .+. ......|.--|+.+.|+||++++|+||+|
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----------e~~------fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----------EFR------FACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccch----------hhh------hccccccceEEEEcccCcccceeEEecCC
Confidence 54 455 999999999999999986432220 000 11245788889999999999999999999
Q ss_pred ceE-EEEccCCcEEeeCC-ccceeeeEEEEEEee------CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 474 GLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWL------GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 474 g~i-~wd~~s~~w~~f~~-~~~e~~~~v~~~~W~------~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
.++ +|.....+=+.... ........++.+.|. ...+++.+. ...+|.+|.+.
T Consensus 640 K~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl----e~GeI~l~~~~ 699 (764)
T KOG1063|consen 640 KKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL----EKGEIVLWRRK 699 (764)
T ss_pred ceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe----cccEEEEEecc
Confidence 999 99987764222211 111122336667774 122344322 34688888764
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.4e-18 Score=191.78 Aligned_cols=211 Identities=21% Similarity=0.273 Sum_probs=156.3
Q ss_pred hhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCe
Q 002405 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (927)
Q Consensus 65 ~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 144 (927)
.+.+..+.|+|.|||.+|.++.+||.|++|+....... + .. +......|.+++.....
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P-------------~t--i~~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------P-------------ET--IDISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------C-------------ch--hhccCceeEEEeecccc
Confidence 35566789999999999999999999999987533210 0 00 11123367888888889
Q ss_pred EEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 145 l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
+++|+.+++|.++..+....... +.....+++++
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~i------------------------------------L~Rftlp~r~~---------- 102 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTI------------------------------------LARFTLPIRDL---------- 102 (933)
T ss_pred eEEeeccceEEEeeCCCCCccce------------------------------------eeeeeccceEE----------
Confidence 99999999999987653322211 01112234444
Q ss_pred EEEeCCcEEEEeeecCccceeeecccc---eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~---~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
+++-+|+.++.|++|..+++.+..... ...+|..+| ++.++|++.+||+.+-||+|++|++++ +.+..++.+...
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k 181 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDK 181 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCc
Confidence 457889999999999999887765432 238999999 999999999999999999999999998 777777766443
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE
Q 002405 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
.........+..++|+|+|..||+...|+.|++++..+......
T Consensus 182 ~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 182 DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 33223356788899999988888888899999999877654333
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=184.16 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=173.4
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccc---ceecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI---DKELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~---~~~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
+.|-.||+++++|...|-++++|..+- ....+|+.++ .+.|+|+ +..+++|++|+.+++||+.+ ......+.+
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~- 151 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQAELSG- 151 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEEEEecC-
Confidence 456799999999999999999994431 1127899999 9999995 56788999999999999987 444446666
Q ss_pred cCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCC-eeEEEeccccccceecceecCCCCCCcccccccc--e
Q 002405 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--S 374 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~ 374 (927)
|++.|.|.+|+| ++..++||+.||+|++||+... ..+.++. | ..+|.++.+-|.+ ..+++++ .
T Consensus 152 -------htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h-g~pVe~vl~lpsg----s~iasAgGn~ 218 (487)
T KOG0310|consen 152 -------HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H-GCPVESVLALPSG----SLIASAGGNS 218 (487)
T ss_pred -------CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C-CCceeeEEEcCCC----CEEEEcCCCe
Confidence 999999999999 5679999999999999999765 4555554 3 5689999999987 6666554 9
Q ss_pred eEEEcCC-CceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccccc
Q 002405 375 MMQWDEY-GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (927)
Q Consensus 375 ~~~W~~~-~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (927)
+++||.- |++++.....|...|.++.+ +..++|++.|+.++++++. +-++ ... ..
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t--~~Kv------------------v~s-~~ 277 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT--NYKV------------------VHS-WK 277 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc--ceEE------------------EEe-ee
Confidence 9999987 56666666669999988888 5789999999999998843 2111 111 12
Q ss_pred CCCceEEEEEccCCCEEEEEeCCceEE
Q 002405 451 QNWPVQHVAASKDGMFLAVAGLHGLIL 477 (927)
Q Consensus 451 ~~~~I~~va~spdG~~la~ag~dg~i~ 477 (927)
-.+||.++++|||++.+++|..+|.+.
T Consensus 278 ~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 278 YPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred cccceeeEEecCCCceEEEecccceee
Confidence 346899999999999999999999883
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.7e-19 Score=172.65 Aligned_cols=245 Identities=16% Similarity=0.171 Sum_probs=173.1
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~D 328 (927)
.+|.+.+ .+...--|+.|||++.|++|||+.+...+ .++.+|.+ |.|||+.++|.. -|..||+++.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G--------h~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG--------HSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC--------CCCCeeEEeecccccCcEeeEeecC
Confidence 5688888 88888889999999999999999998755 45677888 999999999986 89999999999
Q ss_pred CcEEEEEccCCeeEE--EeccccccceecceecCCCCCCcccccccc-----eeEEEcCCCce-EEEEEcCCcceEEEEe
Q 002405 329 RGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWDEYGYR-LYAIEEGSSERVLIFS 400 (927)
Q Consensus 329 g~v~vW~~~~~~~~~--~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-----~~~~W~~~~~~-l~~~~~~~~~~v~~~~ 400 (927)
|.|.||.-.+++-.. ....| .++|++++|.|.+- .-.|++++ .++-.+.+++- --.....|.-.+.+++
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h-~~SVNsV~waphey--gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAH-SASVNSVAWAPHEY--GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhh-cccceeeccccccc--ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 999999998874222 22234 78999999998862 13344443 34444444221 1112234555553333
Q ss_pred c-----------------cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC
Q 002405 401 F-----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (927)
Q Consensus 401 ~-----------------~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd 463 (927)
. .+.++||+.|..+++|....+.-. +-.++.+|.+.||.+|+.|.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~------------------~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK------------------LERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh------------------hhhhhhhcchhhhhhhhccc
Confidence 2 256899999999999997654221 23457899999999999997
Q ss_pred C----CEEEEEeCCceE-EEEccC--CcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccce
Q 002405 464 G----MFLAVAGLHGLI-LYDIRQ--KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSL 536 (927)
Q Consensus 464 G----~~la~ag~dg~i-~wd~~s--~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~ 536 (927)
- .++|++|+||.+ +|.... +.|+. .+
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-----------------------------------------------tl 251 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-----------------------------------------------TL 251 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCcccc-----------------------------------------------cc
Confidence 3 589999999999 997531 11211 11
Q ss_pred eEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEEEec
Q 002405 537 LCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFG 574 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~~~~ 574 (927)
++..+-+-..+..++.|+.|+|.+.|+.+++|+-..+|
T Consensus 252 l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 252 LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 11110111235577888889998999999999765544
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.1e-18 Score=171.65 Aligned_cols=264 Identities=13% Similarity=0.172 Sum_probs=207.6
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~ 279 (927)
+.+|+..|..++ ......++.+++.|.+..+|....+.++ .||.+.| |+.|++.+.++++|+.|++
T Consensus 144 ~~GHkDGiW~Va----------a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 144 LEGHKDGIWHVA----------ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hcccccceeeeh----------hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 345666666554 2333447778888999999999998876 7999999 9999999999999999999
Q ss_pred EEEEecc------CCC---------------------------------cceEEEeeecCCCCCCCCCCeeEEEECCCCC
Q 002405 280 VELYDLA------ESA---------------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (927)
Q Consensus 280 V~vwd~~------~~~---------------------------------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~ 320 (927)
-.||... .+. .++..+. +|.+.|.+..|-.-|+
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--------gH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--------GHRAVVSACDWLAGGQ 285 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--------ccccceEehhhhcCcc
Confidence 9999831 100 0111222 4999999999999999
Q ss_pred EEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC-ceEEEEEcCCcceE
Q 002405 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERV 396 (927)
Q Consensus 321 ~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v 396 (927)
.+++++.|++-.+||+++++++..|.|| ....+.+.-+|.. ..+++.+ +.++||... -+-+.++.||.+.|
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 9999999999999999999999999998 7888888888887 7777776 889999763 35567789999999
Q ss_pred EEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCc
Q 002405 397 LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (927)
Q Consensus 397 ~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg 474 (927)
....| +..+++|+.|.++++|++..-.. |...+-...+++.+++|..++.+|.--.+.
T Consensus 361 TS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 361 TSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred eEEEEecCCceeecCCCceEEEeeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCc
Confidence 76666 88899999999999999987655 444445567889999999999999999888
Q ss_pred eE-EEEccCCcEEeeCC-ccceeeeEEEEEEeeCCEEE
Q 002405 475 LI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIV 510 (927)
Q Consensus 475 ~i-~wd~~s~~w~~f~~-~~~e~~~~v~~~~W~~~~li 510 (927)
.+ +||++..+.-.+.. ..+-+...|...+|..+..+
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcc
Confidence 89 99999887644431 12222234667788755443
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.1e-17 Score=166.27 Aligned_cols=277 Identities=16% Similarity=0.179 Sum_probs=197.1
Q ss_pred cccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEE
Q 002405 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~ 146 (927)
.+.+.++.|++||..+++++.|..++|||...+........+. . ...+.++......++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk--------------------y-G~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK--------------------Y-GVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc--------------------c-cccEEEEecCCceEE
Confidence 5788999999999999999999999999987655332221100 0 011234444444444
Q ss_pred EEec--CCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 147 v~~~--dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
.++. |.+|+.++..+....++ ..+|+..|+++..
T Consensus 73 ~sStk~d~tIryLsl~dNkylRY------------------------------------F~GH~~~V~sL~~-------- 108 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRY------------------------------------FPGHKKRVNSLSV-------- 108 (311)
T ss_pred EccCCCCCceEEEEeecCceEEE------------------------------------cCCCCceEEEEEe--------
Confidence 4444 66788777665443322 3577888888764
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC-CcceEEEeeecCC
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWG 301 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~~~~ 301 (927)
+|-+..+++++.|.++++||....++. .-+.... .+||.|.|-++|+|.....|++||++.. .++..++...+
T Consensus 109 --sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-- 184 (311)
T KOG1446|consen 109 --SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-- 184 (311)
T ss_pred --cCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--
Confidence 677788999999999999999865542 1122333 8899999999999999889999999864 34555555421
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccc--eecceecCCCCCCcccccccc---eeE
Q 002405 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMSGT---SMM 376 (927)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~--v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (927)
+.....+.|.|||||+++..+...+.+.+-|.+.|...+++.++.... --+..|+|++ +.+++|+ ++.
T Consensus 185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIH 257 (311)
T ss_pred ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEE
Confidence 245678999999999999999999999999999999999988762221 1356789999 8888887 899
Q ss_pred EEcCCCceEEEEEcC-CcceEEEEec-cceeeecccCCCeeeeee
Q 002405 377 QWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v~~~~~-~~~~~s~s~d~~~~~w~~ 419 (927)
+|+.++++.+....+ +...+..+.| -+...-++.+..+-.|..
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 999999988888876 4555544444 233333344455666653
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=5.2e-18 Score=176.04 Aligned_cols=231 Identities=13% Similarity=0.148 Sum_probs=192.0
Q ss_pred EeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
.+.....++|..|.+.-+.|....+.+ .||...+ .+.++|+...+++++.|..|+||.+.. .........
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~~----- 301 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSRP----- 301 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcccccc-----
Confidence 344567888888888888887665443 8999999 999999999999999999999999976 444444455
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccc-cccceecceecCCCCCCcccccccc---eeEEE
Q 002405 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (927)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W 378 (927)
|.++|+.+...|.|.||.+++.||++..-|+.++.++...... ..-.+++.+|+||| -.+.+|. .+++|
T Consensus 302 ---h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 302 ---HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIW 374 (506)
T ss_pred ---ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEE
Confidence 9999999999999999999999999999999988877665432 13458899999999 7787776 88999
Q ss_pred cCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCce
Q 002405 379 DEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (927)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (927)
+.....-...+.+|.+.|..++| |-++++++.|+.+++||++.... .+.-......++
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-------------------~kt~~l~~~~~v 435 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-------------------FKTIQLDEKKEV 435 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-------------------cceeeccccccc
Confidence 99988888888999999999988 67899999999999999987654 122222334579
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeC
Q 002405 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (927)
Q Consensus 456 ~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~ 489 (927)
.+++|++.|++|+++|.+=.+ ++.-.++.|....
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 999999999999999999888 8988899997643
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.80 E-value=3.5e-18 Score=195.19 Aligned_cols=262 Identities=16% Similarity=0.191 Sum_probs=206.8
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEE-EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
|..|. ...+++|+.|+++++|+..+ +..+.+ +.+ |.+.|+++++..-+..|++|+.|.+++|||..++
T Consensus 213 ~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~G--------H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 213 CLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVG--------HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred hheee--cCeEEecCCCceeEEeeccc-ceEEEeeccC--------CCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 77777 66799999999999999987 666666 888 9999999999887889999999999999999999
Q ss_pred eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCee
Q 002405 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTY 415 (927)
Q Consensus 340 ~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~ 415 (927)
.+.+++.+| .+.+.++...+. .+.+|+ ++++|+..++.++.+..+|.+.|.++.. +..+++|+.|++++
T Consensus 282 ~C~~~l~gh-~stv~~~~~~~~------~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 282 ECTHSLQGH-TSSVRCLTIDPF------LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVK 354 (537)
T ss_pred cEEEEecCC-CceEEEEEccCc------eEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEE
Confidence 999999998 777777665443 345555 9999999999999999999999988888 88999999999999
Q ss_pred eeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC-cEEeeCCccc
Q 002405 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVFGDITQ 493 (927)
Q Consensus 416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~-~w~~f~~~~~ 493 (927)
+|++.+++. ...+.+|...|.++.+.+. .++.+|+-|+++ +||+.++ +... ...+
T Consensus 355 VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~--tl~~ 411 (537)
T KOG0274|consen 355 VWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH--TLQG 411 (537)
T ss_pred EEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh--hhcC
Confidence 999886553 6778899999999988766 999999999999 9999988 3221 1112
Q ss_pred eeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecC--CccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 494 EQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 494 e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
.. ..+.++.-.++.|+.+.. +..+++|+.... ..+....-+ ..+..+......+++++.|+.+.+|++.
T Consensus 412 h~-~~v~~l~~~~~~Lvs~~a-----D~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 412 HT-SLVSSLLLRDNFLVSSSA-----DGTIKLWDAEEG---ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred Cc-ccccccccccceeEeccc-----cccEEEeecccC---ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc
Confidence 22 224567777888887733 358999977422 222222221 3334444445778889999999999886
Q ss_pred E
Q 002405 572 L 572 (927)
Q Consensus 572 ~ 572 (927)
.
T Consensus 483 ~ 483 (537)
T KOG0274|consen 483 S 483 (537)
T ss_pred c
Confidence 3
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6e-17 Score=154.14 Aligned_cols=286 Identities=14% Similarity=0.159 Sum_probs=186.8
Q ss_pred CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc-----------ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE
Q 002405 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS-----------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~-----------~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (927)
.+.++ +++|+|.|.+.|+|+...+.||.....-.. +...++. ..-|.|.|.|.+|||+|.++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr-----~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKR-----NKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeee-----ccccCccEEEEEecCccCeEE
Confidence 35677 899999999999999999999976532000 0111111 113899999999999999999
Q ss_pred EEEcCCcEEEEEccCCeeE-----EEeccccccceecceecCCCCCCcccccccc----eeEEEcCCCceEEEEEcCCcc
Q 002405 324 VGWKSRGLTVWSVSGCRLM-----STIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSE 394 (927)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~-----~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~ 394 (927)
+|+.|++|++--.....+- ..+..| .+.|..++|--+.......++++. .+.+=+-..++-+....+|.+
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 9999999999766432111 123334 677888888766544556777765 455556677888899999999
Q ss_pred eEEEE-ec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccccc---CCCceEEEEEccCCCEEEE
Q 002405 395 RVLIF-SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QNWPVQHVAASKDGMFLAV 469 (927)
Q Consensus 395 ~v~~~-~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~I~~va~spdG~~la~ 469 (927)
.|+++ ++ +-.+++|+.|.+++.||+..... +-. +-..+.+ ....|.++++.|.|+.||+
T Consensus 185 hilalyswn~~m~~sgsqdktirfwdlrv~~~-v~~---------------l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 185 HILALYSWNGAMFASGSQDKTIRFWDLRVNSC-VNT---------------LDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred cEEEEEEecCcEEEccCCCceEEEEeeeccce-eee---------------ccCcccCCCcccceeEEEEECCCcceeee
Confidence 99665 44 78899999999999999875432 000 0011111 1256899999999999999
Q ss_pred EeCCceE-EEEccCCcEE-eeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCC-CCCcc-ceeEEEecCCc
Q 002405 470 AGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQS-SLLCRKSLLAK 545 (927)
Q Consensus 470 ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~-~l~~~-~~~~~~~~~~~ 545 (927)
|-.|... +||++.+|-- .|-. +..++.+..+.-...+++.|.|. -.|++-+.+ .|... .+...-+....
T Consensus 249 g~~dssc~lydirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd-----~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYD-----MKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred ccCCCceEEEEeeCCceeeeeCC--CccceeEEEeCCCceEEEEeccc-----ceEEEeecccchhhcCceEEEEeccCc
Confidence 9999999 9999998742 2321 22222333333345688888664 356665553 22211 11222222222
Q ss_pred cEE--EEccCCEEEEEEcCCeEEEEEE
Q 002405 546 PIV--MDVYEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 546 ~~~--~~~~~~~l~v~~~d~~i~l~~~ 570 (927)
.+. ..+.+=.++..++|.+.++|.+
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEecc
Confidence 222 2333334666788899999865
No 103
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=1.2e-17 Score=191.55 Aligned_cols=217 Identities=12% Similarity=0.104 Sum_probs=157.8
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeC-CcEEEEeeecCccceeeecccc-----------eecCCCCeE-EEEEcCCCcE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQI 270 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~~-----------~~~~h~~~v-~v~~sp~~~~ 270 (927)
+.+|...|.+++| +|+ +.++++++.|+++++|+..... .+.+|...| +++|+|++..
T Consensus 70 L~gH~~~V~~laf----------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~ 139 (568)
T PTZ00420 70 LKGHTSSILDLQF----------NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139 (568)
T ss_pred EcCCCCCEEEEEE----------cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe
Confidence 3467778888776 554 7889999999999999976421 236799999 9999999875
Q ss_pred -EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecccc
Q 002405 271 -LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 349 (927)
Q Consensus 271 -la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~ 349 (927)
+|+|+.||+|++||+.+ +.....+. |.+.|.+++|+|||..|++++.|+.|+|||+.++..+.++.+|
T Consensus 140 iLaSgS~DgtIrIWDl~t-g~~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH- 208 (568)
T PTZ00420 140 IMCSSGFDSFVNIWDIEN-EKRAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH- 208 (568)
T ss_pred EEEEEeCCCeEEEEECCC-CcEEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-
Confidence 58999999999999987 55444442 5578999999999999999999999999999999988899887
Q ss_pred ccceec-----ceecCCCCCCcccccccc-------eeEEEcCCC-ceEEEEEc--CCcceEE-EEec--cceeeecccC
Q 002405 350 LSSISS-----PIVKPNQDCKYEPLMSGT-------SMMQWDEYG-YRLYAIEE--GSSERVL-IFSF--GKCCLNRGVS 411 (927)
Q Consensus 350 ~~~v~s-----~~~sp~~~~~~~~l~sg~-------~~~~W~~~~-~~l~~~~~--~~~~~v~-~~~~--~~~~~s~s~d 411 (927)
.+.+.+ ..|++++ ..+++++ ++++|+... .+.+.... .+.+.+. .+.. +..+++|+.|
T Consensus 209 ~g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cCCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 443332 2344665 5555533 489999884 44444432 2223321 2222 7788899999
Q ss_pred CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC
Q 002405 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (927)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG 464 (927)
+++++|++..+... ....+. +..|++.++|.|..
T Consensus 285 ~tIr~~e~~~~~~~------------------~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSIR------------------KVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcEE------------------eecccc-cCCCccceEEcccc
Confidence 99999998654211 122233 66788999999864
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-16 Score=160.35 Aligned_cols=275 Identities=15% Similarity=0.191 Sum_probs=199.0
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec--CcEEEEEEEE
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKVQ 97 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~--dg~l~i~~l~ 97 (927)
..--+.|+++|.++++++ |++++|+|.. .+.++.... + .++|. -.++|......+.-+++ |.+||.-++.
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~----s-kkyG~-~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTIN----S-KKYGV-DLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEee----c-ccccc-cEEEEecCCceEEEccCCCCCceEEEEee
Confidence 455689999999888875 6799999995 555544332 1 23443 46888887777777776 7789999998
Q ss_pred ecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCC
Q 002405 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (927)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~ 175 (927)
..+-..++++|.. .|. +++|.++.++.++-|.+|+.|+.........
T Consensus 89 dNkylRYF~GH~~-----------------------~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-------- 137 (311)
T KOG1446|consen 89 DNKYLRYFPGHKK-----------------------RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-------- 137 (311)
T ss_pred cCceEEEcCCCCc-----------------------eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--------
Confidence 5544445655543 333 4456678888899999999865542221111
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--- 252 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--- 252 (927)
.......++++.|+|-++|++.....|+++|.....+
T Consensus 138 ----------------------------------------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 138 ----------------------------------------LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ----------------------------------------EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 0111123367789999999988888899998764321
Q ss_pred --e----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 253 --E----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 253 --~----~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
. ..+..+..+.|||+|+.|..++..+.+.+.|.=+ |..+.++.+...+ -.-+ .+.+|+|||+++.+|+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~----~~~~-~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNA----GNLP-LSATFTPDSKFVLSGS 251 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCC----CCcc-eeEEECCCCcEEEEec
Confidence 1 2244555999999999999999999999999877 7777788772210 0111 5778999999999999
Q ss_pred cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-eeEEEcCCCc
Q 002405 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGY 383 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~ 383 (927)
.||+|.+|++.++..+..+++.....++++.|+|.- ..+++++ .+.+|-+...
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDED 305 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEecccc
Confidence 999999999999999999998547889999999876 6666666 7888987643
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=4.5e-18 Score=178.78 Aligned_cols=229 Identities=18% Similarity=0.195 Sum_probs=174.9
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCCCcEEEEEecCC
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~~~~la~g~~Dg 278 (927)
...+.+|+++. ++|||+.+++|..-.++.+||+..+... .....+. .+++|||.++..+++.||
T Consensus 462 l~rdnyiRSck----------L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 462 LNRDNYIRSCK----------LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred cCcccceeeeE----------ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCC
Confidence 34456666654 5899999999999999999998765432 1112334 789999999999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceeccee
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
.|+|||+.+ ...++.|++ |++.+.||..|+||..|-+|+-|++||.||+..++....... .+.|.++..
T Consensus 532 nI~vwDLhn-q~~VrqfqG--------htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~ 600 (705)
T KOG0639|consen 532 NIAVWDLHN-QTLVRQFQG--------HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGY 600 (705)
T ss_pred cEEEEEccc-ceeeecccC--------CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheeccc
Confidence 999999998 788999999 999999999999999999999999999999987764432221 355777788
Q ss_pred cCCCCCCcccccccc-eeEEEcC--CCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 359 KPNQDCKYEPLMSGT-SMMQWDE--YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 359 sp~~~~~~~~l~sg~-~~~~W~~--~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
+|++ +-++-|- ...+|-. .+.+-. .+.-|.+.|+.+.| |+..++.+.|..+..|..-+|..-
T Consensus 601 cP~~----dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi------- 668 (705)
T KOG0639|consen 601 CPTG----DWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI------- 668 (705)
T ss_pred CCCc----cceeeecccCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCchhhhhhccCccccce-------
Confidence 8887 6665443 3333322 121111 12347788877777 999999999999999987766541
Q ss_pred CCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
.+ ...+.+|.++.+|.|.+||++|+.|..+ +|.+
T Consensus 669 ------------Fq--skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 ------------FQ--SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ------------ee--ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 11 1234679999999999999999999888 8875
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=2.9e-17 Score=163.45 Aligned_cols=194 Identities=18% Similarity=0.322 Sum_probs=149.5
Q ss_pred CCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 256 SGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 256 h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
-.+.| +++||| ...+++.||.||+||+|+++..+....+... .|.++|.+++|+-||..+++|+.|+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 36788 999999 5667889999999999999874444332211 28999999999999999999999999999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecc
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s 409 (927)
||+.+++ ..++..| ...|..+.|-+.. +.+.+++|+ ++++||.+....+.+..- .+++++.+. -..++.+.
T Consensus 99 wDL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEe
Confidence 9999984 5566666 8889999887654 356889999 999999998887777644 567888777 34455556
Q ss_pred cCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc----cCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI----SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
.+..+.++.+..+.. .+. .-++-+||++.-+|+.-.|.|+-.|.+ +..+..+
T Consensus 174 a~r~i~vynL~n~~t----------------------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 174 AERHIAVYNLENPPT----------------------EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred cCCcEEEEEcCCCcc----------------------hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 666777766543221 121 134668999999998888999999999 8877654
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=3.5e-17 Score=171.57 Aligned_cols=263 Identities=15% Similarity=0.207 Sum_probs=191.5
Q ss_pred EEEEEeCCcEEEEeeecCccceeeeccccee---------------------cCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---------------------~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
.+++++|+++.++++.++++.-|+..+++.. .+|.+-+ ++++||||++||+|+.|..|
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v 226 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHV 226 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceE
Confidence 3556888888888888888777765443211 2688888 99999999999999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
.||+.++ .++++.+++ |.+.|.+++|--.-..|.+++.|+++++|++.....+.++-+| .+.|.++....
T Consensus 227 ~Iw~~~t-~ehv~~~~g--------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~IdaL~ 296 (479)
T KOG0299|consen 227 QIWDCDT-LEHVKVFKG--------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGIDALS 296 (479)
T ss_pred EEecCcc-cchhhcccc--------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeechhc
Confidence 9999998 888999998 9999999999988889999999999999999887777888888 66777665443
Q ss_pred CCCCCcccccccc---eeEEEcCCC-ceEEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 361 NQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
-+ ..+..|. ++++|.... .+++. .+|.+.+-+..| ...++|||.+|+|.+|++..... ++++.-...
T Consensus 297 re----R~vtVGgrDrT~rlwKi~eesqlif--rg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~AHg 369 (479)
T KOG0299|consen 297 RE----RCVTVGGRDRTVRLWKIPEESQLIF--RGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRLAHG 369 (479)
T ss_pred cc----ceEEeccccceeEEEeccccceeee--eCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeecccc
Confidence 32 3333332 899999743 34433 455666655666 67889999999999999875432 332221110
Q ss_pred CcceEEEeecCc-ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--EEeeCCccceeeeE--EEEEEee--C
Q 002405 435 DELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQ--SKGLLWL--G 506 (927)
Q Consensus 435 ~~~~w~~~~~~~-~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~--w~~f~~~~~e~~~~--v~~~~W~--~ 506 (927)
..|. .-..++..|++++..|....+|+|+.+|.+ +|-+..+- ...+ .+-++. |.+++|. +
T Consensus 370 --------v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l----~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 370 --------VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL----YSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred --------ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee----eecccccEEEEEEEccCC
Confidence 0111 112344579999999999999999999999 99998872 2222 222222 5567775 5
Q ss_pred CEEEEEEe
Q 002405 507 KIIVVCNY 514 (927)
Q Consensus 507 ~~li~~~~ 514 (927)
+.+++++.
T Consensus 438 k~ivagiG 445 (479)
T KOG0299|consen 438 KRIVAGIG 445 (479)
T ss_pred CEEEEecc
Confidence 66777643
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.77 E-value=2.1e-18 Score=178.06 Aligned_cols=261 Identities=16% Similarity=0.165 Sum_probs=199.3
Q ss_pred eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEc
Q 002405 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (927)
Q Consensus 138 i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (927)
+-.+.+.++.|+.|..|++|.-.++..... ..+.+..+.|++++|
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------------------------------~tLaGs~g~it~~d~- 227 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELI----------------------------------STLAGSLGNITSIDF- 227 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhh----------------------------------hhhhccCCCcceeee-
Confidence 344557888888898888755444331100 234556677888887
Q ss_pred cCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceE
Q 002405 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (927)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~ 293 (927)
.++++..+..+.|+..++|+....+. +.||++-| ++.|.-....+++|+.|.+|++||+.. ..+.+
T Consensus 228 ---------d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~k 297 (459)
T KOG0288|consen 228 ---------DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSK 297 (459)
T ss_pred ---------cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheec
Confidence 67888888888999999998876543 37999999 888887777799999999999999987 66655
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
+.-. ...+.+|.-+ +..+++|-.|++|+.||..+..+..+...+ +.|+++..++++ ..+.+.+
T Consensus 298 t~l~---------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g----~~lLsss 360 (459)
T KOG0288|consen 298 TVLP---------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDG----LELLSSS 360 (459)
T ss_pred cccc---------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCC----eEEeeec
Confidence 4432 3446666666 678899999999999999999888888876 479999999988 5555545
Q ss_pred ---eeEEEcCCCceEEEEEcC------CcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEee
Q 002405 374 ---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (927)
Q Consensus 374 ---~~~~W~~~~~~l~~~~~~------~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (927)
++.+.+..+.++.....+ |+-.-++|++ +.++++||.|+.+++|++..++....
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~---------------- 424 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV---------------- 424 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE----------------
Confidence 888899998888776643 3433488899 88999999999999999988765311
Q ss_pred cCcccccCCCceEEEEEccCCCEEEEEeCCceE-EE
Q 002405 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (927)
Q Consensus 444 ~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~w 478 (927)
......+..|.+++|+|.|.+++++++++.+ +|
T Consensus 425 --l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 425 --LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1111222369999999999999999999998 88
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-17 Score=160.77 Aligned_cols=236 Identities=19% Similarity=0.170 Sum_probs=172.8
Q ss_pred CCcEEEEeeecCccceeeecccc------eecCCCCeE-EEEEcC--CCcEEEEEecCCeEEEEeccCCCcc--eEEEee
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKID------KELGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASL--IRTVSL 297 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~------~~~~h~~~v-~v~~sp--~~~~la~g~~Dg~V~vwd~~~~~~~--~~~l~~ 297 (927)
-|+.++|++.|+++++....... .+.||.++| .++|.+ -|.+||+++.||.|.||.-+. ++- ......
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhh
Confidence 38899999999999988765432 237999999 999865 699999999999999999876 432 222333
Q ss_pred ecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCC--eeEEEeccccccceecceecCCCCC---------
Q 002405 298 YDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDC--------- 364 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~s~~~sp~~~~--------- 364 (927)
|.+.|++++|.|. |-.||.|+.||.|.|.+..+. -....+...|.-.|+++.+.|....
T Consensus 101 --------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 101 --------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred --------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 9999999999996 558999999999999988543 2333333434777999998887321
Q ss_pred -Ccccccccc---eeEEEcCCCc--eEEEEEcCCcceE--EEEec-----cceeeecccCCCeeeeeeeecCCeEEEeec
Q 002405 365 -KYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERV--LIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (927)
Q Consensus 365 -~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v--~~~~~-----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~ 431 (927)
.-..++||+ .+++|..+.+ .+-.++.+|.+-| ++..| ...++|+|.|+++.+|.......
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e------- 245 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE------- 245 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-------
Confidence 113477776 8999988764 3444577898877 34333 34789999999999998652111
Q ss_pred CCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc-CCcEEeeCC
Q 002405 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGD 490 (927)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~-s~~w~~f~~ 490 (927)
.|+ +..+.....++..++||+.|..||+++.|..+ +|--+ .|+|+..+.
T Consensus 246 ------~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 246 ------PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ------ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 121 11222345679999999999999999999999 99654 568887553
No 110
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=163.19 Aligned_cols=241 Identities=13% Similarity=0.238 Sum_probs=170.5
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCc
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~Dg~ 330 (927)
..|..++ ++|++ +.++|+|+.|-+|+|||+.. ...+..+.. |.|.|+++.|.|+-. .|.+|++||.
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll~--------HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILLS--------HAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcceec--------cccceEEEEecCCcchhheeeecCCCc
Confidence 5688888 88874 78999999999999999987 555555666 999999999999875 9999999999
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeeccc
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~ 410 (927)
|.+|++..=.++.+++.| ...|+.++.+|.+ +..++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~ 147 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG 147 (362)
T ss_pred EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence 999999887888888887 5557777776664 33456777
Q ss_pred CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeCC
Q 002405 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (927)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~~ 490 (927)
|+.++.|++..|.... ..-+.+.. ..|.|+|.|.+++++++++.-+|.+.+-+ .|..
T Consensus 148 D~~lr~WNLV~Gr~a~-------------------v~~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAF-------------------VLNLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNAS--VFRE 204 (362)
T ss_pred CceeeeehhhcCccce-------------------eeccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccHh--Hhhh
Confidence 8888888887776521 11112222 23999999999999999997799887654 3332
Q ss_pred ccceeeeEEEEEEee-CCEEEEEEeecCCCeEEEEEeeCCC-CC-ccceeEEEecCCccEEEEccCCEEEEEEcCCeEEE
Q 002405 491 ITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYH-LD-QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHI 567 (927)
Q Consensus 491 ~~~e~~~~v~~~~W~-~~~li~~~~~~~~~~~~l~l~~~~~-l~-~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l 567 (927)
.. +......+.|. +..+++|. .+..+++++.+. .- .....|...+..-....++.+.+|+++++||.|++
T Consensus 205 i~--~~~r~l~~~~l~~~~L~vG~-----d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 205 IE--NPKRILCATFLDGSELLVGG-----DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hh--ccccceeeeecCCceEEEec-----CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 21 11123344554 66777772 235678887752 11 11223333333322344566678999999999999
Q ss_pred EEEEEeccc
Q 002405 568 FHVKLFGEL 576 (927)
Q Consensus 568 ~~~~~~~~~ 576 (927)
|++.|+.+.
T Consensus 278 Wd~~~~~k~ 286 (362)
T KOG0294|consen 278 WDIDMETKK 286 (362)
T ss_pred EEccccccC
Confidence 999987544
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.1e-17 Score=185.20 Aligned_cols=195 Identities=14% Similarity=0.250 Sum_probs=143.5
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcC-CCcEEEEEecCCeE
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAP-EQQILAVGTRRGVV 280 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V 280 (927)
+|...+.+++|++ ..-.++++|+.|++++.||...... ..+...++ .|.|+| .+..+|++.+.|.+
T Consensus 131 EH~Rs~~~ldfh~---------tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 131 EHERSANKLDFHS---------TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred hhccceeeeeecc---------CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 3444455666542 3456788899999999999875432 24567788 999999 47789999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
++||++.+.++...+.. |.|+|.|+.|+|++.+||||+.|+.|+||++.+++......-+...+|..++|.|
T Consensus 202 qlWDlRqp~r~~~k~~A--------H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP 273 (839)
T KOG0269|consen 202 QLWDLRQPDRCEKKLTA--------HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRP 273 (839)
T ss_pred EEeeccCchhHHHHhhc--------ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeecc
Confidence 99999986677777777 9999999999999999999999999999999876543322222357889999999
Q ss_pred CCCCCcccccccc-----eeEEEcCCC-ceEEEEEcCCcceEEEEec----cceeeecccCCCeeeeeee
Q 002405 361 NQDCKYEPLMSGT-----SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 361 ~~~~~~~~l~sg~-----~~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~~w~~~ 420 (927)
... ..+++++ .+.+||... |-...+...|++-+..+.+ ...+.+++.|+++....+.
T Consensus 274 ~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 274 ARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred Ccc---chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 862 4455554 889999865 4556677778776644444 2245667777766544443
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=5.9e-18 Score=183.72 Aligned_cols=230 Identities=17% Similarity=0.227 Sum_probs=177.6
Q ss_pred EEEeCCcEEEEeeecCccceeeecccce-----ecCCCCeE-EEEE-cCCCcEEEEEecCCeEEEEeccCCC-cceEEEe
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASI-APEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~-----~~~h~~~v-~v~~-sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~ 296 (927)
+..-+|+.+++++.|.++++|+...... +..|.+.| |+++ .++..++|+|+-|+.|.+||++... ..+.++.
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 3467899999999999999999876532 26799999 9999 8899999999999999999998721 2333332
Q ss_pred eecC-CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--
Q 002405 297 LYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 297 ~~~~-~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
...- ....++..+|.+++-.+.|..+++|+..+-+++||..+++.+..|+|| +..|..+..+++| ..++|++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDG----t~~ls~sSD 234 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDG----TRLLSASSD 234 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCC----CeEeecCCC
Confidence 2111 112268899999999999999999999999999999999999999988 8999999999999 7777776
Q ss_pred -eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc
Q 002405 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (927)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (927)
++++|+.+..+++.+...|...++++.. -+.+.+|+.|+.+..-++.......+ ..
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl--------------------ic 294 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL--------------------IC 294 (735)
T ss_pred ceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheE--------------------ee
Confidence 9999999999999999999999988766 56788999999887766554322111 11
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 450 ~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
....||..+..+.+.+-+-+++.|+.+ -|.
T Consensus 295 k~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 295 KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred cCCCchhhhhhccccCCceeeeccccceecC
Confidence 223456556665444444566766666 443
No 113
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.76 E-value=3.1e-18 Score=165.61 Aligned_cols=278 Identities=12% Similarity=0.083 Sum_probs=205.6
Q ss_pred cccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCC
Q 002405 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg 278 (927)
.+.+|..+|.++.|++ ++|||-++++++.|+...+-+..++.- +.||.++| +...+.+...-|+++.|-
T Consensus 9 ~c~ghtrpvvdl~~s~-------itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSP-------ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred EEcCCCcceeEEeccC-------CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence 3457888999999977 679999999999999888877776643 38999999 999999999999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe-eEEEeccccccceecce
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPI 357 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~s~~ 357 (927)
+-+|||.-+ +..++.+. |+--|.+++|+.|.++|.+|+.++-+||+|+...+ +...+.+| .+.|..+.
T Consensus 82 takvw~a~t-gdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-tg~Ir~v~ 150 (334)
T KOG0278|consen 82 TAKVWDAVT-GDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-TGGIRTVL 150 (334)
T ss_pred hhhhhhhhh-hhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-CCcceeEE
Confidence 999999887 76666654 78889999999999999999999999999996543 33445566 77777777
Q ss_pred ecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEeccceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 358 ~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
|.... +.++|+. ++++||..++.....+.- ...+ ..++....+++....++++.|+...-+.
T Consensus 151 wc~eD----~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~-------- 217 (334)
T KOG0278|consen 151 WCHED----KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL-------- 217 (334)
T ss_pred EeccC----ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccc--------
Confidence 76554 5555544 899999988877776643 2233 3334433345556667788888654322
Q ss_pred CCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEE
Q 002405 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~ 511 (927)
.++.++| -.|.+.+++|+...++.||.|+.+ .||..++.
T Consensus 218 ------lKs~k~P-------~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------------------------- 257 (334)
T KOG0278|consen 218 ------LKSYKMP-------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------------------------- 257 (334)
T ss_pred ------eeeccCc-------cccccccccCCCceEEecCcceEEEEEeccCCc---------------------------
Confidence 0111123 247888999999899999999988 88887753
Q ss_pred EEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 512 CNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 512 ~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
|+-.|++.+. -|-.-+.++|.|...+.++.||+|+||...
T Consensus 258 ----------Ei~~~nkgh~----------gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 258 ----------EIGSYNKGHF----------GPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ----------eeeecccCCC----------CceEEEEECCCCceeeccCCCceEEEEEec
Confidence 1111322111 122235688999999999999999999875
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.75 E-value=4.8e-17 Score=172.09 Aligned_cols=285 Identities=14% Similarity=0.201 Sum_probs=193.1
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.+|+..| ++++.|.|..+++|+-|-+|++||+..-....+.++.. .+.....|++++|||.|..|.+.+.....+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l----~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL----QPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhcc----CcccccccceeeecCCCCeEEEEecCccee
Confidence 6788999 99999999999999999999999997522222323321 122455799999999999888888778999
Q ss_pred EEEccCCeeEEEe------------ccccccceecceecCCCCCCcccccccc---eeEEEcCCCc----eEEEEEcCCc
Q 002405 333 VWSVSGCRLMSTI------------RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSS 393 (927)
Q Consensus 333 vW~~~~~~~~~~l------------~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~ 393 (927)
|+|-.|...+... +|| ...+++..|+|... +.+++++ +.++|+.+.. +.+..-....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k---~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNK---EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcc---cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 9998876655443 344 77899999999862 3444444 9999998764 2233222222
Q ss_pred ceE----EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCc--ccccCCC--ceEEEEEccCC
Q 002405 394 ERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV--SYISQNW--PVQHVAASKDG 464 (927)
Q Consensus 394 ~~v----~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~--~I~~va~spdG 464 (927)
.+| ..++. ++.+++|+.||+|.+|+......+ |. .-.+|.. .|+|++||+||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------PVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------cceEeeeccCCCCceeEEEecccc
Confidence 333 55666 889999999999999996322111 22 2235666 89999999999
Q ss_pred CEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecC-CCeEEEEEeeCCCCCccceeEEE
Q 002405 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDS-SNTYELLFYPRYHLDQSSLLCRK 540 (927)
Q Consensus 465 ~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~-~~~~~l~l~~~~~l~~~~~~~~~ 540 (927)
++|++=|.|+.. +||+..-+-.++.-..-...+.-+.+++. ...+++|....+ .....|.+|++-.|+ ...+.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki 453 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKI 453 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEe
Confidence 999999999999 99997644322222222333444455554 345555644433 344468888885443 23334
Q ss_pred ecCCccE---EEEccCCEEEEEEcCCeEEEE
Q 002405 541 SLLAKPI---VMDVYEDYILVTYRPFDVHIF 568 (927)
Q Consensus 541 ~~~~~~~---~~~~~~~~l~v~~~d~~i~l~ 568 (927)
.++...+ ...+-=+++.+++.||++++|
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 4443222 334555678888999999987
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=5.2e-17 Score=170.26 Aligned_cols=273 Identities=14% Similarity=0.149 Sum_probs=195.6
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcce-EEEe--------eecCCCC-CCCCCCeeEEEECCCCCEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVS--------LYDWGYS-MDDTGPVSCIAWTPDNSAF 322 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~-~~l~--------~~~~~~~-~~h~~~V~~l~~spdg~~L 322 (927)
..|.-++ |++++|+.++..+++.||+|.=|++.+ +... ..+. +...... ..|...+.+++.||||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 4577777 999999999999999999999999987 4322 1111 1111222 2689999999999999999
Q ss_pred EEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEE
Q 002405 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF 399 (927)
Q Consensus 323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~ 399 (927)
|+|+.|..|.||+..+.+.+..+.+| .+.|.+++|.... ..+.+++ ++++|+.+....+-++.+|++.|..+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999998 8899999997654 3444444 89999999888888888999999888
Q ss_pred ec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002405 400 SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (927)
Q Consensus 400 ~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i 476 (927)
+. .+.+..|+.|.++++|.+.. +. ...|.+|.+.+-|++|- |..++++||.+|.|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-es--------------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ES--------------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSI 350 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cc--------------------eeeeeCCCCCeeeEEEe-cccceeeccCCceE
Confidence 77 45555566999999999832 22 23466788889999997 56788999999999
Q ss_pred -EEEccCCcEEee--CCccceee--------eEEEEEEeeC--CEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEEec
Q 002405 477 -LYDIRQKKWRVF--GDITQEQK--------IQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (927)
Q Consensus 477 -~wd~~s~~w~~f--~~~~~e~~--------~~v~~~~W~~--~~li~~~~~~~~~~~~l~l~~~~-~l~~~~~~~~~~~ 542 (927)
+|++..++ .+| ...++-.. +=+++++-.+ +.++++ +.+..+|+|-.+ ++..-+++....+
T Consensus 351 aLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~ls~ 424 (479)
T KOG0299|consen 351 ALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSLSL 424 (479)
T ss_pred EEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeeccc
Confidence 99998765 223 22111111 1122322222 222222 456789999886 5554455655555
Q ss_pred CCcc--EEEEccCCEEEEEE
Q 002405 543 LAKP--IVMDVYEDYILVTY 560 (927)
Q Consensus 543 ~~~~--~~~~~~~~~l~v~~ 560 (927)
.+-+ +.++..|..++++.
T Consensus 425 ~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccEEEEEEEccCCCEEEEec
Confidence 4422 34556666677654
No 116
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.75 E-value=4.2e-16 Score=163.79 Aligned_cols=199 Identities=13% Similarity=0.197 Sum_probs=140.2
Q ss_pred EEEEeeecCccceeeecccce----------ecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCC-CcceEEEeee
Q 002405 232 LMSCSVSKKGLKLAEFIKIDK----------ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAES-ASLIRTVSLY 298 (927)
Q Consensus 232 ~~~~~~~d~~~~~w~~~~~~~----------~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~ 298 (927)
.+++++.|+++.+||...... ..+|++.| .++|+| ...++++++.|+.+.|||++.. .++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a- 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA- 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-
Confidence 466777888888888653211 26899999 999999 4678999999999999999851 334444455
Q ss_pred cCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCC-eeEEEeccccccceecceecCCCCCCcccccccceeE
Q 002405 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~ 376 (927)
|+++|+|++|+| ++..||+|+.|++|++||+..- ..+.++.+| ...|..+.|+|.. +
T Consensus 271 -------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~----e--------- 329 (422)
T KOG0264|consen 271 -------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHN----E--------- 329 (422)
T ss_pred -------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCC----C---------
Confidence 999999999999 7789999999999999999653 356677776 5666666666654 1
Q ss_pred EEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCC-CCcceEEEeecCcccccCCCce
Q 002405 377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELKILHLNLPVSYISQNWPV 455 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~I 455 (927)
..++|++.|+.+.+||+..-......-.+.+ +++ +...--||...|
T Consensus 330 --------------------------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE-------llF~HgGH~~kV 376 (422)
T KOG0264|consen 330 --------------------------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE-------LLFIHGGHTAKV 376 (422)
T ss_pred --------------------------ceeEecccCCcEEEEeccccccccChhhhccCCcc-------eeEEecCccccc
Confidence 1235566777777777654332110000000 011 112234899999
Q ss_pred EEEEEccCCC-EEEEEeCCceE-EEEccCCcE
Q 002405 456 QHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 456 ~~va~spdG~-~la~ag~dg~i-~wd~~s~~w 485 (927)
...+|+|+.. .+++++.|+.+ +|......|
T Consensus 377 ~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 377 SDFSWNPNEPWTIASVAEDNILQIWQMAENIY 408 (422)
T ss_pred ccccCCCCCCeEEEEecCCceEEEeecccccc
Confidence 9999999876 56788999999 999875443
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=2.2e-17 Score=167.87 Aligned_cols=249 Identities=17% Similarity=0.194 Sum_probs=182.7
Q ss_pred cCCCCeE-EEEEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 254 LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
.||.+.| |+|=+|.. ..+|+|+.||.|++||+.. ..+..+++. |.|.|..|+++. ..++++++|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeec--------ccCceeeEEecc--cceEEecCCcce
Confidence 6899999 99999987 8899999999999999987 788899998 999999999987 778899999999
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEEEcCCcceEEEEec----cceee
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCL 406 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~ 406 (927)
+.|.+.+. +.+++.+ .+.+..+.-+..+ ..+++++ .+-+||......+....-..+.|.+++| ...++
T Consensus 132 K~wk~~~~-p~~tilg--~s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILG--KSVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccCC-cceeeec--ccccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999874 6666544 3344444433333 5666666 8889998776666666555566655544 34567
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEE---------------------EeecC-cccccCCCceEEEEEccCC
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL---------------------HLNLP-VSYISQNWPVQHVAASKDG 464 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~---------------------~~~~~-~~~~~~~~~I~~va~spdG 464 (927)
+++.|+++.++|..++..---++-+.-++...|. ..+-| ..+.+|...|.+|.|||.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 7889999999998876543222222222222221 12223 4677899999999999999
Q ss_pred CEEEEEeCCceE-EEEccCCcEEeeCCccceeeeE-EEEEEee--CCEEEEEEeecCCCeEEEEEeeC
Q 002405 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 465 ~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~-v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
+-+++||.|.+| +|.++.+.-+ +..+...+. |.++.|. ..++++| +.+..+|+|..
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka 344 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKA 344 (433)
T ss_pred chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeec
Confidence 999999999999 9999876532 333444455 6688886 4577766 45567999955
No 118
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=8.5e-17 Score=161.27 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=166.1
Q ss_pred EeCCcEEEEeeecCccceeeeccccee-----cCC----CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGS----GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h----~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
-|+-.++++.+.+..|++||..+++.. ..| ..+.|++|||||..|..|. ...||+||+..+|+.-.....
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 367778888888899999998887654 233 3445999999999998765 579999999543532211111
Q ss_pred ecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---
Q 002405 298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (927)
...+ ..+..|-+.|++||| |.+.+|+|+.-..+-|+.-.++++...+.+| .+.|+.+.|.+++ +.+.+|+
T Consensus 199 ~~~~-k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGaRk~ 272 (406)
T KOG2919|consen 199 VTKG-KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGARKD 272 (406)
T ss_pred hhcc-cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----CeecccccCC
Confidence 0000 012478899999999 6779999999889999988888899999888 7899999999999 7888887
Q ss_pred -eeEEEcCCCc-eEEEEEcCCcc----eE-EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecC
Q 002405 374 -SMMQWDEYGY-RLYAIEEGSSE----RV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (927)
Q Consensus 374 -~~~~W~~~~~-~l~~~~~~~~~----~v-~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 445 (927)
.+..||++.. ..+..+..|.+ +| +.+.+ ++.+++|+.||.+++||+..-.+. +
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~-------------------~ 333 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE-------------------V 333 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-------------------c
Confidence 8999999764 34444444433 44 55556 899999999999999998763331 5
Q ss_pred cccccCCCceEEEEEccCCCEEEEEeC
Q 002405 446 VSYISQNWPVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 446 ~~~~~~~~~I~~va~spdG~~la~ag~ 472 (927)
..+..+..-++.|+++|-=..+|+++.
T Consensus 334 sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 334 SVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccccccccccceecCcccceeeeccC
Confidence 566678888999999999888888763
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=5.6e-17 Score=177.58 Aligned_cols=213 Identities=14% Similarity=0.183 Sum_probs=177.6
Q ss_pred eCCcEEEEeeecCccceeeecccce-----ecCCCCeE-E-EEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-C-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~-----~~~h~~~v-~-v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
-++..++.++.|+++++|+-...+- ..+|.+.+ + +++-+ ++-.+.+|+.|++|.+|.... ..++.++++
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lkg-- 99 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLKG-- 99 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhhc--
Confidence 4555788889999999998643322 24567777 4 67765 555699999999999999987 788999999
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (927)
|...|.|++--.++. ++|||.|.+++||.. +++..++.+| ...|.++++-|.+ .++||+ +++
T Consensus 100 ------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk 164 (745)
T KOG0301|consen 100 ------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK 164 (745)
T ss_pred ------cccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence 999999999888888 999999999999987 4567778888 8999999988875 556666 999
Q ss_pred EEcCCCceEEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCc
Q 002405 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (927)
+|. +++++.++.+|.+.|..+.. ...++|++.||.++.|++ .++. ...+.+|...
T Consensus 165 lWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 165 LWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF 221 (745)
T ss_pred ecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence 997 47889999999999977666 558899999999999997 3333 5667899999
Q ss_pred eEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 455 VQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 455 I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
|.+++..+++..++++|+|+++ +|+..
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999999999999999999999 99864
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=8.6e-17 Score=176.15 Aligned_cols=213 Identities=15% Similarity=0.236 Sum_probs=172.8
Q ss_pred eCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
.|+-.+++++.|.++.+|........ .||..-| |++...++. +++||.|.|+++|... ++...+.+
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~g------ 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQG------ 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCC------
Confidence 46666788889998888877655443 7999999 888888887 9999999999999874 46666777
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcC
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (927)
|+.+|++++.-|++ .++||+.|++|++|.- +++..++.+| ++-|..+++-+++ . ++|++ .++.|+.
T Consensus 139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~----~-flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS----H-FLSCSNDGSIRLWDL 207 (745)
T ss_pred --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC----C-eEeecCCceEEEEec
Confidence 99999999999998 8889999999999974 7789999998 8999999998885 3 44444 8999999
Q ss_pred CCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE
Q 002405 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (927)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (927)
+++.+....+|++-++.++. ...++|++.|+++++|...... +.+++|.+ .|++
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~----------------q~I~lPtt------siWs 264 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV----------------QVITLPTT------SIWS 264 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE----------------EEEecCcc------ceEE
Confidence 56677778899999988884 6788999999999999854111 23334442 4788
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 458 va~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
+.+=++|. +++||.||.+ +|.....||
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 88888887 5678999999 999876665
No 121
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.74 E-value=2e-16 Score=164.38 Aligned_cols=216 Identities=18% Similarity=0.247 Sum_probs=171.5
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
++...|....+++|+.|.++-++|... ++.+.++++ |+..|+++.|+|+...+++++.|..|+||++....
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecch-hhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 777788878999999999999999988 788889999 99999999999999999999999999999997766
Q ss_pred eEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcc--eE--EEEec-cceeeecccCC
Q 002405 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE--RV--LIFSF-GKCCLNRGVSG 412 (927)
Q Consensus 341 ~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~--~v--~~~~~-~~~~~s~s~d~ 412 (927)
.....+-| ...|+.+..+|.+ +++.+++ ++.+-+..++..+.......+ .+ .+|.+ |-.+.+|..|+
T Consensus 295 ~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 295 EPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred Cccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 66666666 8889999999999 8998887 444445666665555433222 23 45555 88889999999
Q ss_pred CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCc
Q 002405 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI 491 (927)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~ 491 (927)
.+++|++..+.. ...|-+|.+||++++|+.+|-|||+++.|+.+ +||++.-+ .|...
T Consensus 370 ~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~ 427 (506)
T KOG0289|consen 370 VVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTI 427 (506)
T ss_pred eEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cccee
Confidence 999999887665 56788999999999999999999999999988 99997543 44333
Q ss_pred cceeeeEEEEEEe--eCCEEEEE
Q 002405 492 TQEQKIQSKGLLW--LGKIIVVC 512 (927)
Q Consensus 492 ~~e~~~~v~~~~W--~~~~li~~ 512 (927)
..+....+..+.. .|.+++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred eccccccceeEEEcCCCCeEEee
Confidence 2222223444444 47788775
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=3.2e-17 Score=172.45 Aligned_cols=265 Identities=13% Similarity=0.124 Sum_probs=194.8
Q ss_pred EEEEEecCeEEEEEccCeEEEeecCCcee--EEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002405 24 IIYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 24 iv~fs~dg~lla~~~~~~v~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~ 101 (927)
.+.+|...+++-+++.+.|+|||+.+++. ++..+ +.+.....+.++...|||+.|.+|....+|.|||+.....
T Consensus 424 AvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEecCCcceeEecCCCeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence 36788889999999999999999976532 11211 2233334557899999999999999999999999985443
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~ 181 (927)
.+... +. .........++++|.+..+.+++||.|.+|+...+....
T Consensus 500 rikae--------lt-----------ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr--------------- 545 (705)
T KOG0639|consen 500 RIKAE--------LT-----------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR--------------- 545 (705)
T ss_pred chhhh--------cC-----------CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---------------
Confidence 21110 00 001111224567788888899999999997654333211
Q ss_pred ccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCC--Ce
Q 002405 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG--DA 259 (927)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~--~~ 259 (927)
.+.+|...+.||. +++||..+-+|.-|.+++-||..++.....|. .-
T Consensus 546 ---------------------qfqGhtDGascId----------is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 546 ---------------------QFQGHTDGASCID----------ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred ---------------------cccCCCCCceeEE----------ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh
Confidence 1234444555544 68999999999999999999999887766553 44
Q ss_pred E-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 260 V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 260 v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
| ++...|++.++|+|-+++.|.|-... +.....+.. |..-|.++.|++.|+++++.+.|+-+-.|...-
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhl--------heScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecC--Cccceeecc--------cccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 5 88999999999999999999888765 344556666 899999999999999999999999999999866
Q ss_pred CeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 339 ~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
|.-+...++ .++|.++..|.++ .++++|+
T Consensus 665 GasiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 665 GASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred ccceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 554444443 5778888888776 6777665
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.1e-18 Score=186.97 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=182.0
Q ss_pred EeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
-..++.+++|+.+..+.+|....+.. +.+|..+| |+.|++...+||.|+.||+|++||+.. +..+++|.+
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg----- 110 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG----- 110 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-----
Confidence 35678888888888888887665433 27899999 999999999999999999999999997 888889988
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEc
Q 002405 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (927)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (927)
|...+.++.|+|-|.+.|+|+.|+-+++||.....|.++.++| ...|..++|+|+| ..+++|. ++++|+
T Consensus 111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD 182 (825)
T ss_pred ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence 9999999999999999999999999999999877788899886 8889999999999 8888876 899999
Q ss_pred CCCceEEEEEcCCcceEEEEec--cc-eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceE
Q 002405 380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (927)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~--~~-~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (927)
...+++...+++|...+..+.+ .+ .+++||.|.++++|++.+-.. ..........|+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR 242 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence 9999999999999999977777 33 457899999999999763221 111122246799
Q ss_pred EEEEccCCCEEEEEeCCce
Q 002405 457 HVAASKDGMFLAVAGLHGL 475 (927)
Q Consensus 457 ~va~spdG~~la~ag~dg~ 475 (927)
+.+|+|+|+.+++|-+...
T Consensus 243 ~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeeecCCceeeecCchhhh
Confidence 9999999999998876553
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=4.9e-16 Score=154.80 Aligned_cols=270 Identities=14% Similarity=0.129 Sum_probs=166.5
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc-ce----ecCCCCeE-EEEEcCCCcEEEEEecCCeEE
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK----ELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~-~~----~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~ 281 (927)
...|.+++|+|. ...+++.++=|+++++|+.... .. ...|.+++ +++|+.||..+++|+.|++++
T Consensus 27 ~DsIS~l~FSP~---------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 27 EDSISALAFSPQ---------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred ccchheeEeccc---------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 344666666442 3445567778899999987652 21 25689999 999999999999999999999
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCcEEEEEccCCeeEEEeccccccceecceec
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
+||+.+ + ....+.. |.++|.++.|-+... +|++||.|++++.||.....++.++.-. ..+.+...-
T Consensus 98 ~wDL~S-~-Q~~~v~~--------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv~ 165 (347)
T KOG0647|consen 98 LWDLAS-G-QVSQVAA--------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADVL 165 (347)
T ss_pred EEEccC-C-Ceeeeee--------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhcc
Confidence 999997 5 4555666 999999999988655 9999999999999999988888877643 233332211
Q ss_pred CCCCCCcccccccc-eeEEEcCCCceE-EEEEcC---Ccc-eEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCC
Q 002405 360 PNQDCKYEPLMSGT-SMMQWDEYGYRL-YAIEEG---SSE-RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (927)
Q Consensus 360 p~~~~~~~~l~sg~-~~~~W~~~~~~l-~~~~~~---~~~-~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~ 433 (927)
..- -.++++. .+.+++++++.- +..... ..- .|..+.=.+-.+-|+..|.+-+..+..+..+.
T Consensus 166 ~pm----~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~------- 234 (347)
T KOG0647|consen 166 YPM----AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD------- 234 (347)
T ss_pred Cce----eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC-------
Confidence 100 1222222 666777654321 111110 011 11111113333556666655554444321100
Q ss_pred CCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEE
Q 002405 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (927)
Q Consensus 434 ~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~ 512 (927)
...++-|...-+ ..+.-.+|.+++|+|.-..||++|.||+. .||-..+ -|++..+.+.+.+.+..+.=.|.+.+.+
T Consensus 235 nFtFkCHR~~~~--~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 235 NFTFKCHRSTNS--VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceeEEEeccCCC--CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 000011110000 11123468999999999999999999999 9997654 3566656666655554544445555443
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.5e-16 Score=156.30 Aligned_cols=237 Identities=17% Similarity=0.291 Sum_probs=154.9
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 256 h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
|..+.|+.||+-|.+||+|+.||.|-+||+.+ .+.-+.+.+ |..+|++++||+||+.|.+++.|..+++||
T Consensus 23 ~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa--------H~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 23 NPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA--------HVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred CCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc--------cccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 44456999999999999999999999999998 666677777 999999999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCccccccc----ceeEEEcCCCceEEEEEcCCcceE----EEEec-cceee
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERV----LIFSF-GKCCL 406 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~~v----~~~~~-~~~~~ 406 (927)
+..|.+.+.++. .+.|..+.|+|.... ..+++- ..+...+.....++-.-...+... ..+.. |+++.
T Consensus 94 l~~gs~l~rirf--~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 94 LLKGSPLKRIRF--DSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred ccCCCceeEEEc--cCccceeeeccccCC--eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 998888888876 478899999887521 112211 133333322222221111111111 12333 77777
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC-CCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+|...|.+.+.+..+.+. ...+.-. ...|.++.|+..|+++++-+.|.++ .|+++.-.
T Consensus 170 tGtsKGkllv~~a~t~e~--------------------vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLEC--------------------VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred EecCcceEEEEecchhee--------------------eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 776666555544332221 1112111 2468999999999999999999999 99986321
Q ss_pred EE-eeCCccceeeeE--EEEEEee-------CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 485 WR-VFGDITQEQKIQ--SKGLLWL-------GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 485 w~-~f~~~~~e~~~~--v~~~~W~-------~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
-. .-+....++.+. |..+.|. |.+++++. ...+.|.+|.+.
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s----~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS----ARAHALYIWEKS 280 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc----ccceeEEEEecC
Confidence 10 001111122222 3345553 44555542 466899999884
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=2.6e-16 Score=165.39 Aligned_cols=269 Identities=17% Similarity=0.150 Sum_probs=175.7
Q ss_pred hhhcccccEEEEcCCcc-EEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc-
Q 002405 64 VQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD- 141 (927)
Q Consensus 64 l~~~G~~~~v~wspDg~-~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~- 141 (927)
+.+.|++..+..-|... .+|+.+..+.+.|||...........+ .+.+.+.+..... .+.-.+....
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----~~~Pdl~L~gH~~------eg~glsWn~~~ 189 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----ECRPDLRLKGHEK------EGYGLSWNRQQ 189 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----cCCCceEEEeecc------ccccccccccc
Confidence 45678888888888654 577788999999999874332211111 1122222211111 1111122222
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCc-
Q 002405 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM- 220 (927)
Q Consensus 142 ~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~- 220 (927)
...++.++.|+.+.+|+.+........ ........+|...|.+++|++.-
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~-----------------------------~~p~~~~~~h~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKV-----------------------------VDPKTIFSGHEDVVEDVAWHPLHE 240 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCcc-----------------------------ccceEEeecCCcceehhhccccch
Confidence 356888888999988765533221000 01113345678888888887644
Q ss_pred ceEEEEEeCCcEEEEeeecCccceeeeccc--c---eecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceE
Q 002405 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--D---KELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIR 293 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~--~---~~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~ 293 (927)
..++.+ ++|+.+.+||.+.. + ...+|...+ |++||| ++-+||+|+.|++|++||+++-...++
T Consensus 241 ~lF~sv----------~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh 310 (422)
T KOG0264|consen 241 DLFGSV----------GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH 310 (422)
T ss_pred hhheee----------cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce
Confidence 344444 44444556777642 1 126899999 999999 567899999999999999998567788
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
++.+ |...|.+|.|||+ ...||+++.|+.+.|||+..-...++ .....++
T Consensus 311 ~~e~--------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-----------~eda~dg---------- 361 (422)
T KOG0264|consen 311 TFEG--------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-----------PEDAEDG---------- 361 (422)
T ss_pred eccC--------CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-----------hhhhccC----------
Confidence 8888 9999999999996 56999999999999999954211111 0000011
Q ss_pred ceeEEEcCCCceEEEEEcCCcceEEEEec----cceeeecccCCCeeeeeee
Q 002405 373 TSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 373 ~~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~~w~~~ 420 (927)
-.+++.+..||...|..|++ .-.++|++.|+.+.+|...
T Consensus 362 ---------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 ---------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ---------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 13566677788888877776 4478899999999999854
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=168.07 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=169.2
Q ss_pred CCCCCceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEE
Q 002405 17 LCPSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFK 95 (927)
Q Consensus 17 ~~~~~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~ 95 (927)
++|++...++-+|+|.+|+.+ -.+.++||.+. .+..|..+. +++..++++.|+-||.+|++|+.||.|++|+
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~~------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVLS------AHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHHH------hhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 356788889999999998888 47899999996 766655432 4788999999999999999999999999999
Q ss_pred EEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCC
Q 002405 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (927)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~ 175 (927)
+..-- +.+++ +.. .++
T Consensus 152 l~~lv--------------------------------------~a~~~--------~~~----------~p~-------- 167 (476)
T KOG0646|consen 152 LTDLV--------------------------------------SADND--------HSV----------KPL-------- 167 (476)
T ss_pred EEeec--------------------------------------ccccC--------CCc----------cce--------
Confidence 86210 00111 000 000
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceec-
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL- 254 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~- 254 (927)
..+.+|.-+|+++.-.+ .+-...+++.+.|.++++||...+..+.
T Consensus 168 --------------------------~~f~~HtlsITDl~ig~--------Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 168 --------------------------HIFSDHTLSITDLQIGS--------GGTNARLYTASEDRTIKLWDLSLGVLLLT 213 (476)
T ss_pred --------------------------eeeccCcceeEEEEecC--------CCccceEEEecCCceEEEEEeccceeeEE
Confidence 11234455566665321 1123467888999999999998776542
Q ss_pred -CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC--cc-----eEEEeeecCCCCCCCCC--CeeEEEECCCCCEEE
Q 002405 255 -GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SL-----IRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFA 323 (927)
Q Consensus 255 -~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--~~-----~~~l~~~~~~~~~~h~~--~V~~l~~spdg~~La 323 (927)
--..++ ++++.|-.+.+-+|+.+|.|.+.++..-. +. .......+.....+|.+ +|+|++.|-||..|+
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 123445 99999999999999999999988875411 00 00011111122335888 999999999999999
Q ss_pred EEEcCCcEEEEEccCCeeEEEeccccccceecceecCC
Q 002405 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (927)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~ 361 (927)
+|+.||.|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPL 330 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhh-ccccceeEeecc
Confidence 9999999999999999998888643 566777666443
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1e-15 Score=152.59 Aligned_cols=198 Identities=11% Similarity=0.121 Sum_probs=160.2
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+.||.+.+ .++.......+++++.|.+.+||.+++ +.++.+..+ |.|.|++++|+|.|.++++++.|++-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecc--------cccceeeEEeccccceEEEccCCcch
Confidence 36899999 888887777999999999999999998 999999998 99999999999999999999999999
Q ss_pred EEEEc------cC---------C-------------------------eeEEEeccccccceecceecCCCCCCcccccc
Q 002405 332 TVWSV------SG---------C-------------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (927)
Q Consensus 332 ~vW~~------~~---------~-------------------------~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (927)
.||.. .. . .+++.|.+| .+.|.+..|-..+ +.+++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vT 289 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVT 289 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeee
Confidence 99972 11 0 122334444 4455555554444 56667
Q ss_pred cc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecC
Q 002405 372 GT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (927)
Q Consensus 372 g~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 445 (927)
++ +..+||.++++++..+.||+..+.-.+. .+.+++.+.|.+.++||+...-. -.
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-------------------sV 350 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-------------------SV 350 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-------------------ee
Confidence 76 8889999999999999999988844433 67888999999999999874333 24
Q ss_pred cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 446 ~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
..|.||.+.|+++.|.-| ..+++|+.|.++ +||+...+
T Consensus 351 ~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred eeecccccceeEEEEecC-CceeecCCCceEEEeeecccc
Confidence 567899999999999855 567899999999 99997765
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=5.1e-14 Score=149.05 Aligned_cols=402 Identities=14% Similarity=0.095 Sum_probs=240.7
Q ss_pred ceEEEEEec--CeEEEEEcc---CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEE
Q 002405 22 QQIIYFKVN--NGLLLIASP---CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (927)
Q Consensus 22 ~~iv~fs~d--g~lla~~~~---~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l 96 (927)
.-.|+||+- |.+++...+ .-+.+|+-. ....++..+.+. ..+..+.|.|-+..|.+....|.+.+|++
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq-k~~~~~~vk~sn------e~v~~a~FHPtd~nliit~Gk~H~~Fw~~ 229 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ-KKAKLGPVKTSN------EVVFLATFHPTDPNLIITCGKGHLYFWTL 229 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhch-hhhccCcceecc------ceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence 455889987 678888753 468999984 444444443322 23467999999999999999999999988
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc-CCeEEEEecCCcEEEEecCCccccceeecccCCC
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~ 175 (927)
+.+....... .++ +.....|.|+... +..+++|-++|.|.+|+-.+....... ..++..
T Consensus 230 ~~~~l~k~~~--------------~fe-----k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~-~aH~gg 289 (626)
T KOG2106|consen 230 RGGSLVKRQG--------------IFE-----KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV-HAHDGG 289 (626)
T ss_pred cCCceEEEee--------------ccc-----cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe-eecCCc
Confidence 7543211100 000 0011234455433 345788888999988654332211111 122222
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce--e
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E 253 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--~ 253 (927)
+.++... -+..+.+.+. . ..-+.|.+.-..+..++........-++.+.+.-++.|.....+-.-....... .
T Consensus 290 v~~L~~l---r~GtllSGgK-D-Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 290 VFSLCML---RDGTLLSGGK-D-RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred eEEEEEe---cCccEeecCc-c-ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 2222211 1111222110 0 111111122222222222222222222223322244444333332222222211 2
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.+|.+.. .++.+|+..++++++.|+.+++|+ + .++.-+.. -..++.|+.|.|.| .+|.|...|.+.
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~---------~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKI---------IEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEE---------ecCceeEeeccCcc-eEEEeeccceEE
Confidence 7899988 999999999999999999999999 2 33433322 35789999999999 999999999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcC--CCceEEEEEcCCcceEEEEec---cce
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE--YGYRLYAIEEGSSERVLIFSF---GKC 404 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~--~~~~l~~~~~~~~~~v~~~~~---~~~ 404 (927)
|.|.++..++. ++.. ...++.++|+|++ .+++-|+ .+.++.. ++.+......-|...|..+++ ++.
T Consensus 432 V~d~e~~~lv~-~~~d-~~~ls~v~ysp~G----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 432 VLDTETQDLVT-IHTD-NEQLSVVRYSPDG----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred EEecccceeEE-EEec-CCceEEEEEcCCC----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 99999865443 3333 6789999999999 8888777 4455543 333443343334467777777 788
Q ss_pred eeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccc----ccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY----ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 405 ~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
+.+.+.|-.+..|.-....+. ....+..|-...+...+ -.++-.|..++-|.+++.+|+|-..|.+ +|.
T Consensus 506 ~~~~S~d~eiLyW~~~~~~~~------ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPSECKQI------TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred EEeccCceEEEEEccccCccc------ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 889888888888832211111 11335568654443222 2456678889999999999999999999 886
Q ss_pred c
Q 002405 480 I 480 (927)
Q Consensus 480 ~ 480 (927)
.
T Consensus 580 y 580 (626)
T KOG2106|consen 580 Y 580 (626)
T ss_pred c
Confidence 5
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=8.1e-16 Score=152.30 Aligned_cols=224 Identities=16% Similarity=0.213 Sum_probs=167.9
Q ss_pred cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCC-----cceE-EEeeecCCCCCCCCCCeeEEEECC-CCCEEEE
Q 002405 254 LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA-----SLIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAV 324 (927)
Q Consensus 254 ~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~-----~~~~-~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Las 324 (927)
..|.+.| ++.+.+ .|+++.+|+.||.|.|||++... ..+. ..-....+-..+|+..|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4578888 999988 59999999999999999997522 1111 011011122345899999999999 7778899
Q ss_pred EEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec
Q 002405 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (927)
Q Consensus 325 g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (927)
++-|.+++|||+.+-+....++.. ..|.+-+.||-. .+...++.|. ++++-|...+..-.++.||.+.|+++++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEeecC--ceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999988777777653 456666777654 2234555554 8899999999999999999999988777
Q ss_pred ---cc-eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002405 402 ---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (927)
Q Consensus 402 ---~~-~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i- 476 (927)
.+ .++||+.|+.+++||+......+.......+ ...++.+.-..|++.|..+||+.||+++++.|-|..+
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 22 5789999999999999876554444433221 0111122345799999999999999999999999999
Q ss_pred EEEccCCcE
Q 002405 477 LYDIRQKKW 485 (927)
Q Consensus 477 ~wd~~s~~w 485 (927)
+|+..+|+-
T Consensus 272 ~wn~~~G~n 280 (397)
T KOG4283|consen 272 VWNMESGRN 280 (397)
T ss_pred EeecccCcc
Confidence 999998874
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.2e-17 Score=179.11 Aligned_cols=237 Identities=18% Similarity=0.250 Sum_probs=193.4
Q ss_pred eeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEE
Q 002405 236 SVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (927)
Q Consensus 236 ~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~ 314 (927)
...+..+++|+.... ..|..++ |+.+-..++.+++|+.|-.+-+|.+.. ...+..+.+ |.++|.|+.
T Consensus 10 ~~~~t~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~--------hespIeSl~ 77 (825)
T KOG0267|consen 10 TKRATKLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTG--------HESPIESLT 77 (825)
T ss_pred eeeeeccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheeec--------cCCcceeee
Confidence 334444567776543 5688888 888877789999999999999999976 444555677 999999999
Q ss_pred ECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcC
Q 002405 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG 391 (927)
Q Consensus 315 ~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~ 391 (927)
|+++..+|++|+.+|+|++||+..++.+++|.+| ...+.++.|+|.+ ++.++|+ ...+||.....+.....+
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecC
Confidence 9999999999999999999999999999999998 8889999999999 7788887 788999987778888888
Q ss_pred CcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEE
Q 002405 392 SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA 468 (927)
Q Consensus 392 ~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la 468 (927)
|...+ ..|++ |+.+++++.|.++++||...++- ...|.+|.+++.++.|+|..-.++
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLA 212 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhc
Confidence 87665 66677 88999999999999999877664 567889999999999999999999
Q ss_pred EEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEE
Q 002405 469 VAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (927)
Q Consensus 469 ~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~ 512 (927)
.||.|+++ +||+.+- .+.+....+ ...+.+..+..+.-++.
T Consensus 213 ~Gs~d~tv~f~dletf--e~I~s~~~~-~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETF--EVISSGKPE-TDGVRSLAFNPDGKIVL 254 (825)
T ss_pred cCCCCceeeeecccee--EEeeccCCc-cCCceeeeecCCceeee
Confidence 99999999 9998652 233333333 23366667766655543
No 132
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=1.4e-16 Score=161.95 Aligned_cols=271 Identities=10% Similarity=0.089 Sum_probs=184.8
Q ss_pred ccccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEE
Q 002405 68 GENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (927)
Q Consensus 68 G~~~~v~wspDg-~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~ 146 (927)
..+.+++=.|.. ..+|+|+.||.|+|||+..-.. ...++.+.|.|..++.+.+.++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~AH~G~V~Gi~v~~~~~~ 123 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFKAHEGLVRGICVTQTSFF 123 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheeecccCceeeEEecccceE
Confidence 345677778876 6799999999999999973221 1223555667777777778889
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
.+++|.++..|..++.....+. +...-......+.++.++++ |..+.+|......++.++.|-.+...++-+
T Consensus 124 tvgdDKtvK~wk~~~~p~~til-----g~s~~~gIdh~~~~~~FaTc---Ge~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPLHTIL-----GKSVYLGIDHHRKNSVFATC---GEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred EecCCcceeeeeccCCcceeee-----cccccccccccccccccccc---CceeeecccccCCccceeecCCCceeEEec
Confidence 9999999999877663221110 00000000011222223333 335567777788889998887777777777
Q ss_pred EeCCc-EEEEeeecCccceeeecccceec--CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 227 YSNGQ-LMSCSVSKKGLKLAEFIKIDKEL--GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 227 s~dG~-~~~~~~~d~~~~~w~~~~~~~~~--~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
+|--. +++++..|+++.++|......+. -..-.+ .++|||.+-.+.+|.+|..+..||+..-..++...++
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d----- 270 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD----- 270 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc-----
Confidence 77654 67777799999999988765431 122334 7899998888999999999999999864456666666
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEc
Q 002405 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (927)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (927)
|...|.+++|||-|+-+++||.|++|+|+.+..+.--......-...|.++.||.|. ++++||+ .+++|-
T Consensus 271 ---hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 271 ---HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS----KYIISGSDDGNVRLWK 343 (433)
T ss_pred ---cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc----cEEEecCCCcceeeee
Confidence 999999999999999999999999999999976532111110002346666666665 5566555 555555
Q ss_pred CC
Q 002405 380 EY 381 (927)
Q Consensus 380 ~~ 381 (927)
..
T Consensus 344 a~ 345 (433)
T KOG0268|consen 344 AK 345 (433)
T ss_pred cc
Confidence 43
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=159.29 Aligned_cols=229 Identities=17% Similarity=0.222 Sum_probs=168.6
Q ss_pred ecCccceeeecccceec---CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEE
Q 002405 238 SKKGLKLAEFIKIDKEL---GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (927)
Q Consensus 238 ~d~~~~~w~~~~~~~~~---~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (927)
....+.+|...+..... -..+++ |++-+|.|.+|+.|+..|.+.+|.+.+ |.++..+.. |=.+|+|+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a--------HYQ~ITcL 129 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA--------HYQSITCL 129 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh--------hccceeEE
Confidence 34456677765443221 123567 999999999999999999999999998 889888888 99999999
Q ss_pred EECCCCCEEEEEEcCCcEEEEEcc---------CCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCC
Q 002405 314 AWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (927)
Q Consensus 314 ~~spdg~~Lasg~~Dg~v~vW~~~---------~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (927)
.|+-||.+|+||+.||.|.+|++. .-...+.+.+| .-+|+.+...+.+ ++ ..+.|.+ ++++|+..
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg-~~-~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG-TN-ARLYTASEDRTIKLWDLS 206 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC-cc-ceEEEecCCceEEEEEec
Confidence 999999999999999999999873 23567777777 6678888776654 22 3455555 99999999
Q ss_pred CceEEEEEcC-CcceEEEEec-cceeeecccCCCeeeeeeeecCCe-E-EEeecCCCCcceEEEeecCcccccCCC--ce
Q 002405 382 GYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDR-L-LVVQSEDTDELKILHLNLPVSYISQNW--PV 455 (927)
Q Consensus 382 ~~~l~~~~~~-~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~-~-~~~~~~~~~~~~w~~~~~~~~~~~~~~--~I 455 (927)
.+.++....- ..-.-+++++ .+.+..|+.+|.+.+..+.+.... - ...++... .......+.||.+ +|
T Consensus 207 ~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~------~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 207 LGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE------ENTQINVLVGHENESAI 280 (476)
T ss_pred cceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc------ccceeeeeccccCCcce
Confidence 9998887643 1222377777 666778888888766555432210 0 00000000 0111345778888 99
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 456 ~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+|+++|-||..|++|+.||.+ +||+.+++
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 999999999999999999999 99998865
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.6e-15 Score=159.08 Aligned_cols=276 Identities=17% Similarity=0.250 Sum_probs=186.7
Q ss_pred CCceEEEEEecCeEEEEEc-cCeEEEeecCCceeE-EEEEeeChHhhhhcccccEEEEcCCcc-EEEEEecCcEEEEEEE
Q 002405 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVR-LGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKV 96 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~-l~~~~r~~~sl~~~G~~~~v~wspDg~-~Lav~t~dg~l~i~~l 96 (927)
+....|.|.|...++.+++ |++++|+.+++..-+ +....- ..-++.+++|.|+|. .+++++...++..||+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee------ccCccceeeecCCCceEEEecccceEEEEeec
Confidence 4677799999999888886 899999998632111 111111 124567999999999 8999999999999999
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCC-ccccceeecccCCC
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG-EFYGAFELVHSSND 175 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~-~~~~~~~~~~~~~~ 175 (927)
...+-... ++..+.. ...-.-..+++++..|++.+.+|.|+++.-.. +....
T Consensus 288 e~ak~~k~---~~~~g~e---------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s--------- 340 (514)
T KOG2055|consen 288 ETAKVTKL---KPPYGVE---------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS--------- 340 (514)
T ss_pred cccccccc---cCCCCcc---------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe---------
Confidence 75442111 1110000 00001135577788999999999998864221 11111
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-- 253 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-- 253 (927)
..-.+.|.++. |++||+.++..+.+|.+.+||+....+.
T Consensus 341 -----------------------------~KieG~v~~~~----------fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 341 -----------------------------FKIEGVVSDFT----------FSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred -----------------------------eeeccEEeeEE----------EecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 11123455544 4799999998889999999998876543
Q ss_pred ---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCC-----CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 002405 254 ---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (927)
Q Consensus 254 ---~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~-----~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (927)
.|....++++.|+++++||+|+..|.|.|||.++. .+++.++.. -+-.|++|+|+||++.||.+
T Consensus 382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--------Ltt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--------LTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred EeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--------hheeeeeeeeCcchhhhhhh
Confidence 34444458888999999999999999999997541 123333332 46679999999999999888
Q ss_pred Ec--CCcEEEEEccCCeeEEEeccc--cccceecceecCCCCCCcccccccc---eeEEEc
Q 002405 326 WK--SRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (927)
Q Consensus 326 ~~--Dg~v~vW~~~~~~~~~~l~~~--~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (927)
|. +..+|+-.+.+...+..+... ..+.|++++|||.+ .+++-|. .+.+|-
T Consensus 454 S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s----G~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS----GYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC----ceEEeecCCCceeeEe
Confidence 75 578999988777665554431 13558888898877 5555443 455553
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-14 Score=164.02 Aligned_cols=264 Identities=14% Similarity=0.152 Sum_probs=173.4
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002405 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~ 100 (927)
-.-|++-|+|.++.++ +++.|++|+..-. . ..++++...|. ...+..-++..+++++.+++|..|....+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd-~------e~P~ti~~~g~-~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSD-E------EEPETIDISGE-LVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCc-c------cCCchhhccCc-eeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 4458899999999998 5889999998621 0 22334443443 234556678899999999999999886443
Q ss_pred ceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccc
Q 002405 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (927)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~ 180 (927)
..-. +. .+.. ...+.++..++..++.|++|-.|.++..++....
T Consensus 88 ~~~i----------L~----Rftl-------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------- 131 (933)
T KOG1274|consen 88 EDTI----------LA----RFTL-------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------- 131 (933)
T ss_pred ccce----------ee----eeec-------cceEEEEecCCcEEEeecCceeEEEEeccccchh---------------
Confidence 2100 00 1110 1133566777889999999999988876644322
Q ss_pred cccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc-eeeecccceecCCCCe
Q 002405 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGSGDA 259 (927)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~w~~~~~~~~~~h~~~ 259 (927)
..+.+|+++|.++.|+|..+..+..+-||++.+....++.+. .|....+..-......
T Consensus 132 ---------------------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 132 ---------------------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred ---------------------eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 224678899999998555544444444444444433333321 1111111000111334
Q ss_pred E-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 260 V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 260 v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
+ .++|+|++..+|+.+.|++|++|+... .....+++.+. +...+.+++|||+|++||++..||.|.|||+.+
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc------cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 4 789999988888889999999999887 77777777643 444499999999999999999999999999986
Q ss_pred CeeEEEeccccccceecceecCCC
Q 002405 339 CRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 339 ~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
... +.. ...|.+.+|.|+.
T Consensus 264 ~~~----~~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 264 HER----HEF-KRAVCCEAWKPNA 282 (933)
T ss_pred chh----ccc-cceeEEEecCCCC
Confidence 211 111 3457777777765
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.5e-15 Score=159.98 Aligned_cols=275 Identities=17% Similarity=0.203 Sum_probs=172.7
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCc
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~Dg~ 330 (927)
.||++.| |+++.|.|.+||+|+.||+||||.+.+ +.+++++.. .+.|.||+|+|.+. .||++-.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---------cceeEEEEecCCCCceeEEEEecCc-
Confidence 6999999 999999999999999999999999999 999998876 66899999999665 677777655
Q ss_pred EEEEEc-cCCeeEEEeccccccceecceecCCCCCCccccccc-------ceeEEEcCCC----ceEEEEEcCCcceEEE
Q 002405 331 LTVWSV-SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYG----YRLYAIEEGSSERVLI 398 (927)
Q Consensus 331 v~vW~~-~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-------~~~~~W~~~~----~~l~~~~~~~~~~v~~ 398 (927)
+.|-+. .|-++..... .+.+.++ .++..|.... ..-+.+.-.|...|.+
T Consensus 466 ~~ivnp~~G~~~e~~~t-------------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPT-------------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred eEEeCccccchhhhcch-------------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 555443 3322111000 0122221 1566787652 1112333456777877
Q ss_pred Eec---cceeeecccCCCe---eeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC
Q 002405 399 FSF---GKCCLNRGVSGMT---YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 399 ~~~---~~~~~s~s~d~~~---~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~ 472 (927)
+++ |+++++.+.++.. .++.+..... |.|. ....+-|.++.|+|.-.++.+|++
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------------------Q~PF--~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------------------QSPF--RKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccc------------------cCch--hhcCCceeEEEecCCCceEEEEec
Confidence 777 8899998877643 3344332222 2233 334567899999999999999999
Q ss_pred CceEEEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEE
Q 002405 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 550 (927)
Q Consensus 473 dg~i~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~ 550 (927)
....+||+..+.. -....+...-+..|+-. |+.+|++++.....++.+.+-++- . .....|.. ....+.
T Consensus 587 ~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP-y-k~lr~H~~----avr~Va 657 (733)
T KOG0650|consen 587 RSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP-Y-KTLRLHEK----AVRSVA 657 (733)
T ss_pred cceEEEehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch-h-HHhhhhhh----hhhhhh
Confidence 9988999876431 11112222334445443 689999876554444444443320 0 00001111 111112
Q ss_pred ccCC--EEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEE
Q 002405 551 VYED--YILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTV 589 (927)
Q Consensus 551 ~~~~--~l~v~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~ 589 (927)
.... .+++++.|+++.+|+-.+..++ ..++.|.+.+.
T Consensus 658 ~H~ryPLfas~sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~ 696 (733)
T KOG0650|consen 658 FHKRYPLFASGSDDGTVIVFHGMVYNDL--LQNPLIVPLKR 696 (733)
T ss_pred hccccceeeeecCCCcEEEEeeeeehhh--hcCCceEeeee
Confidence 2222 2555788899999998887766 45677777544
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.1e-14 Score=152.84 Aligned_cols=270 Identities=16% Similarity=0.168 Sum_probs=183.2
Q ss_pred EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 137 ~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
.|.+....++++.-||.++++..+++.+.. |.++-+
T Consensus 220 ~FHp~~plllvaG~d~~lrifqvDGk~N~~--------------------------------------------lqS~~l 255 (514)
T KOG2055|consen 220 QFHPTAPLLLVAGLDGTLRIFQVDGKVNPK--------------------------------------------LQSIHL 255 (514)
T ss_pred EecCCCceEEEecCCCcEEEEEecCccChh--------------------------------------------heeeee
Confidence 456667889999999999999888766442 222333
Q ss_pred ccCcceEEEEEeCCc-EEEEeeecCccceeeeccccee-----cCCC-CeE-EEEEcCCCcEEEEEecCCeEEEEeccCC
Q 002405 217 CLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (927)
Q Consensus 217 ~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~-----~~h~-~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~ 288 (927)
.......+.|.|+|. .+++++...-...||+.+.+.. .|+. ..+ ...+||++++||..+..|-|.+-...+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT- 334 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT- 334 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-
Confidence 333333455688998 7777777777778998765432 3444 345 889999999999999999999999887
Q ss_pred CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccc
Q 002405 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (927)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~ 368 (927)
++.+.+++. .|.|.+++|+.||+.|.+++.+|.|.+||+....+++.+...|.-.-++++.++++ .+
T Consensus 335 ~eli~s~Ki---------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng----~y 401 (514)
T KOG2055|consen 335 KELITSFKI---------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG----SY 401 (514)
T ss_pred hhhhheeee---------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC----ce
Confidence 888888886 78999999999999999999999999999999888888876434345667778888 89
Q ss_pred ccccc---eeEEEcCCCc------eEEEEEcCCcceEEEEec---cceeeecc--cCCCeeeeeeeecCCeEEEeecCCC
Q 002405 369 LMSGT---SMMQWDEYGY------RLYAIEEGSSERVLIFSF---GKCCLNRG--VSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 369 l~sg~---~~~~W~~~~~------~l~~~~~~~~~~v~~~~~---~~~~~s~s--~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
+++|+ -+-+++.++. +.+.....=...|..+.| ++.++-+| ...++++-.+.... ++.
T Consensus 402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T----VFs---- 473 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT----VFS---- 473 (514)
T ss_pred EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee----eec----
Confidence 99998 4555654321 222221111223433333 44433333 23333332221100 000
Q ss_pred CcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
..|.. ...-+.|+|++|||.|.++|+|..+|.+ +|.+.
T Consensus 474 --------NfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 --------NFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --------cCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 01211 1122348999999999999999999999 99763
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.64 E-value=1.5e-14 Score=143.51 Aligned_cols=290 Identities=17% Similarity=0.213 Sum_probs=181.0
Q ss_pred ceEEEeecc---CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCc
Q 002405 133 LSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (927)
Q Consensus 133 ~~v~~i~~~---~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (927)
|+|.++.-+ +.+++.|.+||.+.+++.+... .++....-+...++ ..+..-..|+.
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t--~~e~s~li~k~~c~-------------------v~~~h~~~Hky 102 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNAT--DYEASGLIAKHKCI-------------------VAKQHENGHKY 102 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEecccc--chhhccceeheeee-------------------ccccCCcccee
Confidence 455555433 5789999999999987664322 11000000000000 00011235677
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcC---CCcEEEEEecCCeEEEE
Q 002405 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAP---EQQILAVGTRRGVVELY 283 (927)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp---~~~~la~g~~Dg~V~vw 283 (927)
.|.++.|.| -|--++.+++-|.++++||..+.+.. ..-.+.| +-++|| ...++|+|..|-+|++.
T Consensus 103 ~iss~~WyP---------~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 103 AISSAIWYP---------IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred eeeeeEEee---------ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 777776644 34556777788999999998876543 2234556 777888 35699999999999999
Q ss_pred eccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEccCC-eeEEEecccc------------
Q 002405 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQIS------------ 349 (927)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~vW~~~~~-~~~~~l~~~~------------ 349 (927)
|+.. |...+++++ |.+.|.++.|||... .||+|+.||.+++||+... -++.++..|.
T Consensus 174 Di~S-Gs~sH~LsG--------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 174 DIAS-GSFSHTLSG--------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred eccC-Ccceeeecc--------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence 9998 999999999 999999999999655 7899999999999999643 3555555442
Q ss_pred -ccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcC---CcceEEEEeccceeeecccCCCeeeeeeeec
Q 002405 350 -LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERVLIFSFGKCCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 350 -~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~---~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~ 422 (927)
.+.|++++|+.++ ..+++.. .++.|+...++--....+ |...+ +|+-. +. +.+..+. .+...
T Consensus 245 h~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~---~~~~~-~~-~~~s~vf--v~~p~ 313 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT---SFAVH-IQ-SMDSDVF--VLFPN 313 (397)
T ss_pred ccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccc---cceEE-Ee-ecccceE--EEEec
Confidence 4557778888777 5555544 788898876643221111 11111 01000 11 1111111 11112
Q ss_pred CCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
+..+.++.-.+.+ ....+..|-..|.+.++-|+=+...+|..||.+ .|..
T Consensus 314 ~~~lall~~~sgs--------~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 314 DGSLALLNLLEGS--------FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CCeEEEEEccCce--------EEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 2333322211111 133445676678889999999999999999999 8876
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=2.9e-15 Score=166.14 Aligned_cols=198 Identities=14% Similarity=0.183 Sum_probs=144.7
Q ss_pred EEEEcC-CCcEEEEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEc
Q 002405 261 CASIAP-EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 261 ~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~ 336 (927)
.|.|+. +.++|||++.+|.|-+||+.... ..+..+.. |+..|+++.|++ ..++|++|+.||+|++||+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--------HERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh--------hccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 677774 46899999999999999997622 33345555 999999999998 5779999999999999999
Q ss_pred cCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeee
Q 002405 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA 416 (927)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~ 416 (927)
....-..++++. ..+|..++|+|.. +..++++...|.+.+
T Consensus 164 R~~~S~~t~~~n-SESiRDV~fsp~~---------------------------------------~~~F~s~~dsG~lql 203 (839)
T KOG0269|consen 164 RSKKSKSTFRSN-SESIRDVKFSPGY---------------------------------------GNKFASIHDSGYLQL 203 (839)
T ss_pred eccccccccccc-chhhhceeeccCC---------------------------------------CceEEEecCCceEEE
Confidence 876655555443 3334444444331 344567778889999
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCcccee
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ 495 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~ 495 (927)
||+.+.+. ....+.+|++||.++.|+|++.+||+||+|+.+ +||..+.+-+. ....+.
T Consensus 204 WDlRqp~r-------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tInT 262 (839)
T KOG0269|consen 204 WDLRQPDR-------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTINT 262 (839)
T ss_pred eeccCchh-------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEEee
Confidence 99987665 245678999999999999999999999999999 99998765332 111222
Q ss_pred eeEEEEEEeeCC--EEEEEEeecCCCeEEEEEeeCC
Q 002405 496 KIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 496 ~~~v~~~~W~~~--~li~~~~~~~~~~~~l~l~~~~ 529 (927)
-..+..+.|-+. +.++.|.- ..+.++++|+..
T Consensus 263 iapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVR 296 (839)
T ss_pred cceeeeeeeccCccchhhhhhc--cccceEEEEeec
Confidence 233557889632 44443332 466899999874
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.3e-14 Score=142.67 Aligned_cols=263 Identities=13% Similarity=0.146 Sum_probs=181.9
Q ss_pred ceEEEEEecCe-EEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002405 22 QQIIYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 22 ~~iv~fs~dg~-lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~ 100 (927)
.+-|.|+|.+. |||+.-|+++++|++. ..... ..+.+.+++.+++|.++ ..+++|+.||.|+.||+..+.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~-------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLK-------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEecc-chhhh-------hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc
Confidence 44488998865 6666679999999996 22111 12446688899999986 578999999999999998655
Q ss_pred ceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc--CCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
... ++.+...++|+... ...+++|+.|+.|..| +.......
T Consensus 87 ~~~------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~w--D~R~~~~~----------- 129 (323)
T KOG1036|consen 87 EDQ------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFW--DPRNKVVV----------- 129 (323)
T ss_pred cee------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEE--eccccccc-----------
Confidence 321 22334455666544 5678899999999985 43321100
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----- 253 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----- 253 (927)
........|.++ +-.|..++++..+..+.+||+.+....
T Consensus 130 ------------------------~~~d~~kkVy~~------------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 130 ------------------------GTFDQGKKVYCM------------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred ------------------------cccccCceEEEE------------eccCCEEEEeecCceEEEEEcccccchhhhcc
Confidence 011122245444 456888888888888999998764322
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC---cceEEEeeecCC-CCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWG-YSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~---~~~~~l~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
..-.-.+ |++..|++.=.|+++-||.|.+=.+++.. +....++.+... ....--.||++|+|+|--..||||+.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 2234457 99999998889999999999887776521 223334431100 000123579999999998999999999
Q ss_pred CcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccc
Q 002405 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (927)
|.|.+||.+..+.++.+... ..+|.+++|+-++ ..++.
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAi 291 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAI 291 (323)
T ss_pred ceEEEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEE
Confidence 99999999998888777665 5668889998888 55553
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.64 E-value=1.6e-13 Score=149.58 Aligned_cols=272 Identities=11% Similarity=0.090 Sum_probs=166.7
Q ss_pred eEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEE-EEEecCcEEEEEEEEecCceeecCCCC
Q 002405 32 GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (927)
Q Consensus 32 ~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~L-av~t~dg~l~i~~l~~~~~~~~~~~~~ 109 (927)
++|++. .++.+.+|+.. .+..+..+. ..+....++|+|||+.+ +++..++.+++|++..+........
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-- 71 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--
Confidence 567776 48899999985 433333222 22334679999999987 4567789999999864321111100
Q ss_pred CCCccceeeeEEeecccccccccceEEEeeccCCeEEEEe-cCCcEEEEecCCccccceeecccCCCCcccccccccCCC
Q 002405 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (927)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~-~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 188 (927)
.......++.++++.+++++ .++.+.+|+... ..... .
T Consensus 72 --------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~------------~------- 110 (300)
T TIGR03866 72 --------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIET--RKVLA------------E------- 110 (300)
T ss_pred --------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCC--CeEEe------------E-------
Confidence 00112235666777777664 477777765432 11110 0
Q ss_pred CCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCc-cceeeeccccee---cCCCCeEEEEE
Q 002405 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKE---LGSGDAVCASI 264 (927)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~-~~~w~~~~~~~~---~~h~~~v~v~~ 264 (927)
......+.+ +.++|||+.++++..++. +..|+..+.+.. .....+.+++|
T Consensus 111 ----------------~~~~~~~~~----------~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (300)
T TIGR03866 111 ----------------IPVGVEPEG----------MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEF 164 (300)
T ss_pred ----------------eeCCCCcce----------EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEE
Confidence 000111222 445788888887776543 445565544322 11223348999
Q ss_pred cCCCcEEEEE-ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCC--CeeEEEECCCCCEEEEE-EcCCcEEEEEccCCe
Q 002405 265 APEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCR 340 (927)
Q Consensus 265 sp~~~~la~g-~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~--~V~~l~~spdg~~Lasg-~~Dg~v~vW~~~~~~ 340 (927)
+|++++++++ ..+|.|++||+.+ ++.+..+.....+ .+.+ ....++|+|||++++++ +.++.+.+||+.+++
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~---~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPG---VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccc---cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9999988554 4699999999987 6555554431000 0111 23468999999986554 456789999998887
Q ss_pred eEEEeccccccceecceecCCCCCCccccccc----ceeEEEcCCCceEEEEEc
Q 002405 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 341 ~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~ 390 (927)
....+.. ...+.+++|+|++ +.++++ .++++|+.++++++....
T Consensus 241 ~~~~~~~--~~~~~~~~~~~~g----~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 241 VLDYLLV--GQRVWQLAFTPDE----KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEEEe--CCCcceEEECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 7665533 2357889999998 665543 289999999988766654
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=2.8e-14 Score=143.93 Aligned_cols=220 Identities=12% Similarity=0.164 Sum_probs=153.5
Q ss_pred EEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC
Q 002405 232 LMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (927)
Q Consensus 232 ~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (927)
+++.++.-|-|++.|..+.+. ..+|..++ .+.+.|+ -+++.+||.|.+||+|++++ ..++..+.+. .+|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~-----egH 180 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGGV-----EGH 180 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEeccc-----ccc
Confidence 566666777888888876654 37999999 9999996 57999999999999999998 7788877663 259
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec---------------------------cccccceecceec
Q 002405 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR---------------------------QISLSSISSPIVK 359 (927)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~---------------------------~~~~~~v~s~~~s 359 (927)
.+.|.++.|++||.++|+++.|..+++|++...+....++ .-|...|.++.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999999999999999999999997432211111 0012223333321
Q ss_pred CCCCCCcccccccc---eeEEEcCCCc-eE-------------EEEEcCCcceE--E--EEec-cceeeecccCCCeeee
Q 002405 360 PNQDCKYEPLMSGT---SMMQWDEYGY-RL-------------YAIEEGSSERV--L--IFSF-GKCCLNRGVSGMTYAR 417 (927)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~-~l-------------~~~~~~~~~~v--~--~~~~-~~~~~s~s~d~~~~~w 417 (927)
- +++.|-+ .+..|-++.. +- +....-....+ + ++++ ++.++.|+..|.+.+|
T Consensus 261 g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 261 G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 1 2344333 7888988422 11 11111112233 2 3333 8899999999999999
Q ss_pred eeeecCCeEEEeecCCCCcceEEEeecCcccc--cCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
++...+... ..++. .....|++.+||.||..|+..+.||++ -||..
T Consensus 335 dL~~~ep~~------------------~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPK------------------CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCcc------------------CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 987655410 11111 124569999999999999999999999 88753
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.7e-14 Score=141.86 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=167.4
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc-c------eecCCCCeE-EEEEcC--CCcEEEEEe
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-D------KELGSGDAV-CASIAP--EQQILAVGT 275 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~-~------~~~~h~~~v-~v~~sp--~~~~la~g~ 275 (927)
+|+.-|.++.| ..-|+.+++++.|+++++||.... . .|..|.+++ .+.|.| =|+.+|++|
T Consensus 11 ~h~DlihdVs~----------D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 11 GHKDLIHDVSF----------DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred CCcceeeeeee----------cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 34444666554 677999999999999999985332 1 247799999 888866 389999999
Q ss_pred cCCeEEEEeccCC-----C-cce--EEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEE--
Q 002405 276 RRGVVELYDLAES-----A-SLI--RTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMS-- 343 (927)
Q Consensus 276 ~Dg~V~vwd~~~~-----~-~~~--~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~-- 343 (927)
.|++++||.-... + +-+ .++.. ..+.|++|.|.| -|-.||+++.||++|||+........
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D--------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVD--------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeec--------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 9999999986321 1 111 22332 678999999999 58899999999999999885432211
Q ss_pred ----Eec------cccccceecceecCCCCCCcccccccc--------eeEEEcCC-Cc-eE--EEEEcCCcceEEEEec
Q 002405 344 ----TIR------QISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEY-GY-RL--YAIEEGSSERVLIFSF 401 (927)
Q Consensus 344 ----~l~------~~~~~~v~s~~~sp~~~~~~~~l~sg~--------~~~~W~~~-~~-~l--~~~~~~~~~~v~~~~~ 401 (927)
.+. +.....-.++.++|.. ...+.++-|+ .+++|... ++ +. +..+.+|.+.|..++|
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 111 1112334455565432 1223444443 46667543 23 22 2234688899966666
Q ss_pred ----cc---eeeecccCCCeeeeeeeecCCeEEEeecCCCCcce-EEEeecCcccccCCCceEEEEEccCCCEEEEEeCC
Q 002405 402 ----GK---CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK-ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (927)
Q Consensus 402 ----~~---~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d 473 (927)
|+ .+++++.|| +++|.+......+ ...+...+... =-.++....+.+|+++|+.+.|+-.|..|++.|.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC
Confidence 43 678999999 9999887433222 11111111110 01233455688999999999999999999999999
Q ss_pred ceE-EEEc
Q 002405 474 GLI-LYDI 480 (927)
Q Consensus 474 g~i-~wd~ 480 (927)
|.+ +|..
T Consensus 310 G~VRLWka 317 (361)
T KOG2445|consen 310 GCVRLWKA 317 (361)
T ss_pred ceeeehhh
Confidence 999 9965
No 144
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2e-13 Score=137.12 Aligned_cols=270 Identities=15% Similarity=0.144 Sum_probs=177.4
Q ss_pred ccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeec-cCCeEE
Q 002405 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (927)
Q Consensus 68 G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~l~ 146 (927)
..+.++.|+|.+..|++++-||++++|++.....++.+ + ...++.+.+. +...++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-----------------------~-~~~plL~c~F~d~~~~~ 69 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-----------------------K-HGAPLLDCAFADESTIV 69 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-----------------------e-cCCceeeeeccCCceEE
Confidence 45679999999999999999999999999754322111 0 1123333322 345789
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
+|+-||.|+.++.+..... .+..|...+++|++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~-------------------------------------~igth~~~i~ci~~~--------- 103 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED-------------------------------------QIGTHDEGIRCIEYS--------- 103 (323)
T ss_pred EeccCceEEEEEecCCcce-------------------------------------eeccCCCceEEEEee---------
Confidence 9999999999887643321 124577889999884
Q ss_pred EeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
+.-..+++++-|+++++||....... ....+.| |+.. .+..|++|+.|..|.+||+.+-.... .....
T Consensus 104 -~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS----- 174 (323)
T KOG1036|consen 104 -YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRRES----- 174 (323)
T ss_pred -ccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhccc-----
Confidence 33445677888999999998753222 2334466 6654 57789999999999999998722222 11110
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee----EEEeccccccceecceecCCCCCCcccccccceeEEEc
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~ 379 (927)
.-+-.++||++-|++.-.|+++-||.|.|=.+..... ...++-| +..
T Consensus 175 -~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH-----------r~~----------------- 225 (323)
T KOG1036|consen 175 -SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH-----------RLS----------------- 225 (323)
T ss_pred -cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee-----------ecc-----------------
Confidence 1356789999999999999999999988766544311 1112211 000
Q ss_pred CCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceE
Q 002405 380 EYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (927)
Q Consensus 380 ~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (927)
.++.+++. +| ++|++ -+.++||+.||-+..|+....+. ...+......|.
T Consensus 226 ~~~~~~~y-------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr--------------------l~q~~~~~~SI~ 278 (323)
T KOG1036|consen 226 EKDTEIIY-------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR--------------------LKQLAKYETSIS 278 (323)
T ss_pred cCCceEEE-------EeceeEeccccceEEecCCCceEEEccCcchhh--------------------hhhccCCCCceE
Confidence 01111111 23 33344 55789999999999999754332 223333345699
Q ss_pred EEEEccCCCEEEEEeC
Q 002405 457 HVAASKDGMFLAVAGL 472 (927)
Q Consensus 457 ~va~spdG~~la~ag~ 472 (927)
+++|+.||..||+|+.
T Consensus 279 slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeccCCCeEEEEec
Confidence 9999999999999984
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.62 E-value=1.6e-13 Score=149.66 Aligned_cols=224 Identities=13% Similarity=0.162 Sum_probs=151.1
Q ss_pred EEEEeCCcEE-EEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEE-EecCCeEEEEeccCCCcceEEEeee
Q 002405 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~-g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
++++|||+.+ +++..++.+.+|+..+++.. ..+.....++++|+++.+++ ++.|+++++||+.+ .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~- 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV- 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-
Confidence 4457888865 55667788999997765432 23334448899999997755 45689999999987 555554432
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc-ccc---c
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg-~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l-~sg---~ 373 (927)
...+.+++|+|||+.+++++.++ .+.+||..++.....+... ....++.|+|++ ..+ +++ .
T Consensus 114 --------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 179 (300)
T TIGR03866 114 --------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG 179 (300)
T ss_pred --------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence 23468899999999999998875 4677899887766554332 234668899988 544 333 2
Q ss_pred eeEEEcCCCceEEEEEcCC-----cceE----EEEec-ccee-eecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~-----~~~v----~~~~~-~~~~-~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
.+.+|+.++++.+.....+ ...+ ..+++ ++.+ ++.+.++.+.+|+...++..
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~----------------- 242 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL----------------- 242 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-----------------
Confidence 7899999988776544321 1111 34455 5553 34455667888876433220
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEE-eCCceE-EEEccCCc
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 484 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~a-g~dg~i-~wd~~s~~ 484 (927)
....+...+.+++|+|+|++|+++ +.+|.+ +||+.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 243 ----DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ----EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111223468899999999999987 458899 99998876
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=2.1e-14 Score=150.31 Aligned_cols=220 Identities=13% Similarity=0.145 Sum_probs=162.0
Q ss_pred CCcEEEEeeecCccceeeecc-----cce-------------------ecCCCCeE-EEEEcCCC-cEEEEEecCCeEEE
Q 002405 229 NGQLMSCSVSKKGLKLAEFIK-----IDK-------------------ELGSGDAV-CASIAPEQ-QILAVGTRRGVVEL 282 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~-----~~~-------------------~~~h~~~v-~v~~sp~~-~~la~g~~Dg~V~v 282 (927)
-|.++|.|.-+..|.+||+.- +.. -.+|+++| .++||-.. ..||+||.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 467888888888999998531 100 03799999 99999864 57999999999999
Q ss_pred EeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCee-EEEeccccccceecceecC
Q 002405 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~-~~~l~~~~~~~v~s~~~sp 360 (927)
||+++ +++..++.. |.+.|.+++|.| .+..|.+|+.|++|++.|...... -...+. .+.|-.+++.|
T Consensus 271 WD~~~-g~p~~s~~~--------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~ 339 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH--------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDP 339 (463)
T ss_pred EEcCC-CCcceehhh--------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecC
Confidence 99998 888888877 999999999999 578999999999999999873111 111111 45577788887
Q ss_pred CCCCCccccccc---ceeEEEcCCC-ceEEEEEcCCcceEEEEec----cceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 361 NQDCKYEPLMSG---TSMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 361 ~~~~~~~~l~sg---~~~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
... ..+..+ ++++-.|.+. ++++.+.+.|++.|-.+++ ...++|++.|+++++|++.....+
T Consensus 340 ~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~------- 409 (463)
T KOG0270|consen 340 HSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK------- 409 (463)
T ss_pred CCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-------
Confidence 763 222233 3777778765 4888899999999955555 457889999999999998754432
Q ss_pred CCCcceEEEeecCcccccCC---CceEEEEEccC-CCEEEEEeCCceE-EEEccCC
Q 002405 433 DTDELKILHLNLPVSYISQN---WPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~---~~I~~va~spd-G~~la~ag~dg~i-~wd~~s~ 483 (927)
....|. +...|.++.|+ --++|.||..+.+ +||+.+.
T Consensus 410 --------------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 410 --------------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred --------------ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 222222 22456667776 3578889998877 9998664
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.8e-13 Score=135.67 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=154.6
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcC--CccEEEEEecCcEEEEEEEEe
Q 002405 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsp--Dg~~Lav~t~dg~l~i~~l~~ 98 (927)
..-|.|.+.|+..|++ +|.+++||+.+.+. +...++..=-.+.|.+..|.|.| =|+.+|+++.|+++.||.=..
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCC---CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 4557899999999999 58899999964332 22223222113568899999987 478999999999999996431
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eecc--CCeEEEEecCCcEEEEecCCccc-cceeecccC
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD--NKHMLLGLSDGSLYSISWKGEFY-GAFELVHSS 173 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~--~~~l~v~~~dg~i~~~~w~~~~~-~~~~~~~~~ 173 (927)
... ..+. ..|... ..+......|+. |++. +-.|+++..||.++++.-....+ .+.++.
T Consensus 93 ~~~----~~~~----~~Wv~~------ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq--- 155 (361)
T KOG2445|consen 93 KSE----EAHG----RRWVRR------TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ--- 155 (361)
T ss_pred ccc----cccc----ceeEEE------EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh---
Confidence 110 0000 011110 011122223333 3333 34577778899999874322111 111100
Q ss_pred CCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCc--ceEEEEEeCC------cEEEEeeecCcccee
Q 002405 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNG------QLMSCSVSKKGLKLA 245 (927)
Q Consensus 174 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~~~s~dG------~~~~~~~~d~~~~~w 245 (927)
+. +. ....+...+....-|+.|++.. ...+++..|. +..+...+++.-+ |
T Consensus 156 ~E---i~------------------~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w 213 (361)
T KOG2445|consen 156 HE---IQ------------------NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-W 213 (361)
T ss_pred hh---hh------------------hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-e
Confidence 00 00 0001122234445566676442 1222333332 3333222222211 1
Q ss_pred eecccceecCCCCeE-EEEEcCC----CcEEEEEecCCeEEEEeccCC-----------CcceEEEeeecCCCCCCCCCC
Q 002405 246 EFIKIDKELGSGDAV-CASIAPE----QQILAVGTRRGVVELYDLAES-----------ASLIRTVSLYDWGYSMDDTGP 309 (927)
Q Consensus 246 ~~~~~~~~~~h~~~v-~v~~sp~----~~~la~g~~Dg~V~vwd~~~~-----------~~~~~~l~~~~~~~~~~h~~~ 309 (927)
.. ...+.+|.++| .++|.|+ ..+||+|+.|| |+||.+... +.....+.......-.+|.++
T Consensus 214 ~k--va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 214 LK--VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred ee--ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 11 11136899999 9999996 56899999999 999999731 111111111111112359999
Q ss_pred eeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 310 V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
|+.+.|.=-|..|++.++||.||+|...
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999999999763
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.56 E-value=1.3e-13 Score=144.91 Aligned_cols=277 Identities=14% Similarity=0.158 Sum_probs=172.0
Q ss_pred cCCCCeE-EEEEcCCC--cEEEEEecCCeEEEEeccCCC---cceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEE
Q 002405 254 LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW 326 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~--~~la~g~~Dg~V~vwd~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~ 326 (927)
.-+...+ +++|+|.. +++|+|..-|+|-+||+.+.. .-+..+.. |+++|.+|.|+| +-..+.+.|
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--------hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--------HSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--------CCccccceEecCCChhheeeec
Confidence 3456777 99999964 689999999999999995322 23444555 999999999999 455888899
Q ss_pred cCCcEEEEEccCCe--eEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceE-EEEEcCCcceE--EE
Q 002405 327 KSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LI 398 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~--~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l-~~~~~~~~~~v--~~ 398 (927)
.||++++-|++++. .+.++... ...+++..|+... ..+..+. ..-+||.++..- .-...-|..+| ++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 99999999998763 23333211 3345555565543 3333322 344666554321 22223456677 55
Q ss_pred Eec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecC-cccccCCCceEEEEEccCCCEEEEEeCCce
Q 002405 399 FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (927)
Q Consensus 399 ~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~I~~va~spdG~~la~ag~dg~ 475 (927)
+.+ -..++|+|.|++.++||+.+-..+- -| .....|.-+|.++.|||+|-.|++-+.|..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~ 392 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE 392 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCc
Confidence 555 5578999999999999988654420 02 234578899999999999888999999999
Q ss_pred E-EEEcc--CCcEEeeCCccceee----eEEEEEEeeCC--EEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCC--
Q 002405 476 I-LYDIR--QKKWRVFGDITQEQK----IQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-- 544 (927)
Q Consensus 476 i-~wd~~--s~~w~~f~~~~~e~~----~~v~~~~W~~~--~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~-- 544 (927)
| +||.. +.+-...+...|.+. .......|..+ +++++.+. ..|.+|+.. ..++.+..-.|.
T Consensus 393 IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----r~IDv~~~~---~~q~v~el~~P~~~ 464 (498)
T KOG4328|consen 393 IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----RPIDVFDGN---GGQMVCELHDPESS 464 (498)
T ss_pred eEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-----cceeEEcCC---CCEEeeeccCcccc
Confidence 9 99974 111111111112111 12224566543 45556443 347777653 223333211221
Q ss_pred ---ccEEEEccCCEEEEE-EcCCeEEEE
Q 002405 545 ---KPIVMDVYEDYILVT-YRPFDVHIF 568 (927)
Q Consensus 545 ---~~~~~~~~~~~l~v~-~~d~~i~l~ 568 (927)
.+..+.|.++.++.+ ...|.|.+|
T Consensus 465 tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 465 TIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccccceeecccccceeccCCccceEEEE
Confidence 245677888866554 345566555
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.56 E-value=8.7e-14 Score=151.18 Aligned_cols=262 Identities=17% Similarity=0.276 Sum_probs=186.3
Q ss_pred eE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 259 ~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
.+ .++|-|||..|+.+.. ..+.+||.++ |..+.++++ |++.|.|++||.||+.+|+|+.|+.|.+|+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~nd-G~llqtLKg--------HKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSD-GTLLQPLKG--------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCC-ccccccccc--------ccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 67 8999999998888654 4789999998 889999999 99999999999999999999999999999863
Q ss_pred CCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCC
Q 002405 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (927)
Q Consensus 338 ~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~ 412 (927)
+...++-.|.+.+.+..|+|-. ..++|++ .--+|+++....... ....++..-++ |++++-|-.+|
T Consensus 84 ---lEG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 84 ---LEGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ---ccceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCc
Confidence 3334554447889999999987 7788776 667898876433221 12345555555 88999999999
Q ss_pred CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC-----CEEEEEeCCceE-EEEccCCcEE
Q 002405 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKWR 486 (927)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG-----~~la~ag~dg~i-~wd~~s~~w~ 486 (927)
|+.+.+- .++.++.+ ..--|.+.||++++|+|+. ..++++.-..+. .|.+...
T Consensus 155 TIsiRNk-~gEek~~I-----------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--- 213 (1081)
T KOG1538|consen 155 TISIRNK-NGEEKVKI-----------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--- 213 (1081)
T ss_pred eEEeecC-CCCcceEE-----------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence 9988752 23333221 2223678899999999973 478888888888 7776542
Q ss_pred eeCCccceeeeE--EEEEEeeCCEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEEecCCc--cEEEEccCCEEEEEE
Q 002405 487 VFGDITQEQKIQ--SKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAK--PIVMDVYEDYILVTY 560 (927)
Q Consensus 487 ~f~~~~~e~~~~--v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~--~l~~~~~~~~~~~~~~--~~~~~~~~~~l~v~~ 560 (927)
..+... .-.|. |..-.-+|.++++| +.+..+.+|.++ .|. .+ -+.... .+...|++.++++++
T Consensus 214 ~Igk~r-~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLG--Tv---g~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 214 QIGKDR-ALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLG--TV---GEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred eecccc-cCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEe--ec---cccceeEEEEEEccCCceEEEEE
Confidence 122110 01122 33334457888887 345688999886 222 11 112222 345678999999999
Q ss_pred cCCeEEEEEEE
Q 002405 561 RPFDVHIFHVK 571 (927)
Q Consensus 561 ~d~~i~l~~~~ 571 (927)
.||++..|.+.
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 99999998764
No 150
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.55 E-value=2.3e-13 Score=140.32 Aligned_cols=209 Identities=15% Similarity=0.216 Sum_probs=141.0
Q ss_pred CCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcC
Q 002405 302 YSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (927)
Q Consensus 302 ~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~ 380 (927)
.-.+|+++|..++|+| +...+||||+|.+|.||++..+.+...+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 3446999999999999 67899999999999999996543322211
Q ss_pred CCceEEEEEcCCcceE--EEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceE
Q 002405 381 YGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (927)
Q Consensus 381 ~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (927)
+.+..+.+|..+| ++..+ .+.++|++.|.++.+|++.+++.- -+ +.|.+-|.
T Consensus 122 ---epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~i~ 177 (472)
T KOG0303|consen 122 ---EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDMVY 177 (472)
T ss_pred ---cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCeEE
Confidence 2233445666655 44444 556788999999999999888762 12 33999999
Q ss_pred EEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccc
Q 002405 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSS 535 (927)
Q Consensus 457 ~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~ 535 (927)
+++|+-||.+++++++|..+ +||..+++--.-+ ..||.. .-....|.++..+......+.++.++-+|+.++|..--
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~-k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGA-KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCC-CcceeEEeccCceeeeccccccccceeccCcccccCcc
Confidence 99999999999999999999 9999988754333 234432 12235676655555434555677899999887776642
Q ss_pred eeEEEecCCccEEEE---ccCCE-EEEEEcCCeEEEEEEE
Q 002405 536 LLCRKSLLAKPIVMD---VYEDY-ILVTYRPFDVHIFHVK 571 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~---~~~~~-l~v~~~d~~i~l~~~~ 571 (927)
.+... -.+.-+++- ++.+. ++++-.|+.|+-|.+.
T Consensus 256 ~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 256 ALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 22222 223334333 22222 4555667777766554
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.54 E-value=2.5e-13 Score=143.44 Aligned_cols=214 Identities=17% Similarity=0.200 Sum_probs=158.5
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
...|++......++++|+..|+|+|||+.. ..+.+.++. |+..|++|.+.-...+||+++..|.|.|-.+.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkd--------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKD--------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccC--------CcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 344777777779999999999999999985 555666777 99999999999999999999999999999999
Q ss_pred CCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEE-EcCCcceE--EEEec--cceeeecc
Q 002405 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERV--LIFSF--GKCCLNRG 409 (927)
Q Consensus 338 ~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v--~~~~~--~~~~~s~s 409 (927)
++....++.......|.-+.|+|.. ...+.+.+ .+.+||..+...+.. .+.|.... ++|++ ...+++.+
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~sk---r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSK---RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred cCccccceecCCCCeEEEeeccccc---ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 8876667765434556678888875 23333333 889999988765554 45676555 67777 56789999
Q ss_pred cCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEee
Q 002405 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (927)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f 488 (927)
.|..+.++|...... ..-+.-..|..+++|+++|.+|+.|+..|.+ .||+++.+-..-
T Consensus 229 ~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 229 YDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred ccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 999999998753221 1122234588999999999999999999999 999987653221
Q ss_pred CCccceeeeEEEEEEeeC
Q 002405 489 GDITQEQKIQSKGLLWLG 506 (927)
Q Consensus 489 ~~~~~e~~~~v~~~~W~~ 506 (927)
-...+.. .|+.++|-.
T Consensus 288 v~sah~~--sVt~vafq~ 303 (673)
T KOG4378|consen 288 VRSAHDA--SVTRVAFQP 303 (673)
T ss_pred Eeeeccc--ceeEEEeee
Confidence 1112222 266677753
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=140.97 Aligned_cols=119 Identities=17% Similarity=0.314 Sum_probs=98.6
Q ss_pred cccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCCCcEEEEEec
Q 002405 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTR 276 (927)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~~~~la~g~~ 276 (927)
++.+|...|-++.|+|. ...++++++-|+++++||...+.+. ..|..-| .++||.+..+||+|+.
T Consensus 252 Pf~gH~~SVEDLqWSpt---------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPT---------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cccccccchhhhccCCc---------cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 34557778888888663 3346788899999999999876322 6788888 9999999999999999
Q ss_pred CCeEEEEeccCC--CcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccC
Q 002405 277 RGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 277 Dg~V~vwd~~~~--~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~ 338 (927)
||+++|||++.- +.++.+++- |+++|++|.|+| +...+|+++.|..|.+||+.-
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~--------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKY--------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEe--------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999752 456778888 999999999999 567889999999999999854
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.3e-13 Score=147.00 Aligned_cols=313 Identities=16% Similarity=0.181 Sum_probs=184.3
Q ss_pred EEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCcc--EEEEEecCcEEEEEEEEecCc
Q 002405 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK--LIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 25 v~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~--~Lav~t~dg~l~i~~l~~~~~ 101 (927)
|...|.|.+||+++ |++|+||-+. ++..+-.. .-.+.+.+|+|+|.+. .||++..+. +.|-+...+..
T Consensus 406 iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~-------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~ 476 (733)
T KOG0650|consen 406 ISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTV-------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDR 476 (733)
T ss_pred EEecCCcceeeecCCCCcEEEEEee-cceEEEEE-------eecceeEEEEecCCCCceeEEEEecCc-eEEeCccccch
Confidence 44455599999996 7899999996 54433322 2346789999999886 466666555 66666554421
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~ 181 (927)
....... ..+. + .+ ++ .-.++.+. .|........+.
T Consensus 477 ~e~~~t~----ell~------~---------------~~-~~----~~p~~~~~--~W~~~~~~e~~~------------ 512 (733)
T KOG0650|consen 477 LEVGPTK----ELLA------S---------------AP-NE----SEPDAAVV--TWSRASLDELEK------------ 512 (733)
T ss_pred hhhcchh----hhhh------c---------------CC-Cc----cCCcccce--eechhhhhhhcc------------
Confidence 1000000 0000 0 00 00 01122332 344322111100
Q ss_pred ccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCC
Q 002405 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGD 258 (927)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~ 258 (927)
... ....+...|.+++|+..+.+++++.++|.. ..+-+.++..... +.-..+
T Consensus 513 -----------------~v~-~~I~~~k~i~~vtWHrkGDYlatV~~~~~~-------~~VliHQLSK~~sQ~PF~kskG 567 (733)
T KOG0650|consen 513 -----------------GVC-IVIKHPKSIRQVTWHRKGDYLATVMPDSGN-------KSVLIHQLSKRKSQSPFRKSKG 567 (733)
T ss_pred -----------------ceE-EEEecCCccceeeeecCCceEEEeccCCCc-------ceEEEEecccccccCchhhcCC
Confidence 000 012356678888887777776666665431 1111223222111 111233
Q ss_pred eE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 259 ~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
.+ ++.|+|...+|.++++ ..|++||+.. +.+++++.. ....|.+++.+|.|.-|+.|+.|+.+..+|+.
T Consensus 568 ~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k-qelvKkL~t--------g~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQ-RSVRIYDLSK-QELVKKLLT--------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred ceeEEEecCCCceEEEEec-cceEEEehhH-HHHHHHHhc--------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 44 9999999999988776 4799999987 667766655 56679999999999999999999999999995
Q ss_pred -CCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeee
Q 002405 338 -GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA 416 (927)
Q Consensus 338 -~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~ 416 (927)
+.+...+++-| ...+.+++|++.- .++++ |+.|+++.+
T Consensus 638 lsskPyk~lr~H-~~avr~Va~H~ry----PLfas------------------------------------~sdDgtv~V 676 (733)
T KOG0650|consen 638 LSSKPYKTLRLH-EKAVRSVAFHKRY----PLFAS------------------------------------GSDDGTVIV 676 (733)
T ss_pred cCcchhHHhhhh-hhhhhhhhhcccc----ceeee------------------------------------ecCCCcEEE
Confidence 44677778777 7778888887764 44443 333343333
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecC-cccccCCC----ceEEEEEccCCCEEEEEeCCceE-EE
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNW----PVQHVAASKDGMFLAVAGLHGLI-LY 478 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~----~I~~va~spdG~~la~ag~dg~i-~w 478 (927)
+.-.--.+ +.....-+| ..+.+|.- -|..+.|+|.-.+|.+||.||++ +|
T Consensus 677 fhg~VY~D------------l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYND------------LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred Eeeeeehh------------hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 21110000 000000012 23334543 38889999999999999999999 88
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.52 E-value=6.2e-13 Score=139.78 Aligned_cols=276 Identities=12% Similarity=0.137 Sum_probs=169.3
Q ss_pred hcccccEEEEcCCc--cEEEEEecCcEEEEEEEEe---cCceeecCCCCCCCccceeeeEEeecccccccccceEEEee-
Q 002405 66 REGENLQAVWSPDT--KLIAVVTSSLYLHIFKVQI---TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV- 139 (927)
Q Consensus 66 ~~G~~~~v~wspDg--~~Lav~t~dg~l~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~- 139 (927)
+.|.+++++|.|-- +++|+|...|.|=+||+.. ...+.+. +..+.++|.++.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----------------------f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----------------------FTPHSGPVSGLKF 242 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----------------------eccCCccccceEe
Confidence 35888999999965 4789999999999999942 2222211 122223344432
Q ss_pred -c-cCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEc
Q 002405 140 -S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (927)
Q Consensus 140 -~-~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (927)
+ +...++..+.||+|+..+.+...-... .........+.++.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v----------------------------------~s~~~d~~~fs~~d-- 286 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNISEEV----------------------------------LSLDTDNIWFSSLD-- 286 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhhHHH----------------------------------hhcCccceeeeecc--
Confidence 2 236788899999999877664331111 00001111222333
Q ss_pred cCcceEEEEEeCCcEEEEeeecCccceeeecccce----ecCCCCeE-EEEEcCCC-cEEEEEecCCeEEEEeccCCCcc
Q 002405 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASL 291 (927)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~----~~~h~~~v-~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~ 291 (927)
++.+.+.++++.+=|...+||...... +.-|...| .+++||-. .+||||+.|++.+|||++.-+..
T Consensus 287 --------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 287 --------FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred --------ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 344555555555545667787765432 35577788 99999964 57999999999999999752211
Q ss_pred e-EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc----CCeeEEEeccccc--cc--eecceecCCC
Q 002405 292 I-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISL--SS--ISSPIVKPNQ 362 (927)
Q Consensus 292 ~-~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~----~~~~~~~l~~~~~--~~--v~s~~~sp~~ 362 (927)
. ..++. ..|+.+|.+..|||+|-.|++.+.|..|+|||.. .-++.+++..... .. .--.+|.|+.
T Consensus 359 ~sp~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 359 ASPFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred CCcceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc
Confidence 1 12222 2499999999999988889999999999999983 2233333332101 11 1223677765
Q ss_pred CCCcccccccc---eeEEEcCCCceEEEEEcCCcc----eEEEEec-cceeeecc-cCCCeeee
Q 002405 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVLIFSF-GKCCLNRG-VSGMTYAR 417 (927)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~----~v~~~~~-~~~~~s~s-~d~~~~~w 417 (927)
..++.|- .+-+++.+++++++.+.+... .+..+.+ ...+++|+ ..|.+++|
T Consensus 433 ----~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 433 ----NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ----cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 6666554 677889999987776543221 2366666 44344444 44444444
No 155
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=6.9e-13 Score=141.35 Aligned_cols=218 Identities=15% Similarity=0.197 Sum_probs=140.1
Q ss_pred cEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec
Q 002405 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (927)
Q Consensus 71 ~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~ 150 (927)
.++.|+..-..+.++..+-.+.-|++..+....... +. -.++.... +..+-. ++ ...++.+++++.
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~--p~--df~pt~~h-~~~rs~-~~--------g~~~d~~~i~s~ 83 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL--PD--DFVPTDMH-LGGRSS-GG--------GKGSDTLLICSN 83 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhC--Cc--ccCCcccc-cccccc-CC--------CCCcceEEEEcC
Confidence 478898887777777666555556665433221100 00 00000000 000000 00 112477999999
Q ss_pred CCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCC
Q 002405 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (927)
Q Consensus 151 dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG 230 (927)
||.+.+++-.+.-+... ..|.+.+.+-. ++|||
T Consensus 84 DGkf~il~k~~rVE~sv-------------------------------------~AH~~A~~~gR----------W~~dG 116 (737)
T KOG1524|consen 84 DGRFVILNKSARVERSI-------------------------------------SAHAAAISSGR----------WSPDG 116 (737)
T ss_pred CceEEEecccchhhhhh-------------------------------------hhhhhhhhhcc----------cCCCC
Confidence 99999876443322211 12333343333 48999
Q ss_pred cEEEEeeecCccceeeeccc--ceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCC
Q 002405 231 QLMSCSVSKKGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (927)
Q Consensus 231 ~~~~~~~~d~~~~~w~~~~~--~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (927)
.-+++.+.||.+++|.-..- ........+| |++|.|+..-++. |..|.+.+=.+.. ...+-.++. |.
T Consensus 117 tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~-n~k~i~WkA--------HD 186 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAA-NSKIIRWRA--------HD 186 (737)
T ss_pred ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeeccc-ccceeEEec--------cC
Confidence 99999999999999964321 1123456778 9999999888777 4556777777765 445556777 99
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCC
Q 002405 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (927)
Q Consensus 308 ~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~ 361 (927)
|-|.++.|+|....+++|++|-..+|||-+|..++.+-. | ..++++++|.|+
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd 238 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPE 238 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeeccc
Confidence 999999999999999999999999999999876654432 2 456777777666
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.51 E-value=3.2e-13 Score=146.84 Aligned_cols=261 Identities=16% Similarity=0.164 Sum_probs=173.2
Q ss_pred EEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEE
Q 002405 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (927)
Q Consensus 136 ~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (927)
.|+.||+.+++++..+ .+.+++-+ .+... .++.+|+..|.+++
T Consensus 18 ~afkPDGsqL~lAAg~-rlliyD~n--dG~ll----------------------------------qtLKgHKDtVycVA 60 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS-RLLVYDTS--DGTLL----------------------------------QPLKGHKDTVYCVA 60 (1081)
T ss_pred eEECCCCceEEEecCC-EEEEEeCC--Ccccc----------------------------------cccccccceEEEEE
Confidence 3778899888887655 44455433 22211 23467777887776
Q ss_pred EccCcceEEEEEeCCcEEEEeeecCccceeeecc-cceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceE
Q 002405 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-IDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (927)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~-~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~ 293 (927)
| +.||+.+++|+.|..+.+|+..- +.....|++++ |+.|||-...||+++-+ ..-+|..++ +.+.
T Consensus 61 y----------s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q--K~V~ 127 (1081)
T KOG1538|consen 61 Y----------AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ--KSVS 127 (1081)
T ss_pred E----------ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhh--hhHH
Confidence 6 88999999999999999997542 33336799999 99999999999998764 467888764 2222
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec-cccccceecceecCCCCCCc-ccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQDCKY-EPLMS 371 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~-~~~~~~v~s~~~sp~~~~~~-~~l~s 371 (927)
+.+ ....|.+++|..||++||-|-.||+|.+-+-.+......-+ |+..++|.+++|+|+..... +.+
T Consensus 128 K~k---------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~-- 196 (1081)
T KOG1538|consen 128 KHK---------SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL-- 196 (1081)
T ss_pred hhh---------hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceE--
Confidence 222 25678999999999999999999999999876654433333 33467899999999863111 111
Q ss_pred cceeEEEcCCCceEEEEEcCC----cceE----EEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEE
Q 002405 372 GTSMMQWDEYGYRLYAIEEGS----SERV----LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (927)
Q Consensus 372 g~~~~~W~~~~~~l~~~~~~~----~~~v----~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (927)
.+.-|+-. --+..+.|. +..+ .++++ |.++.-|+.|+..+++.- ..-+
T Consensus 197 --aV~DW~qT--LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR--~Gvr--------------- 255 (1081)
T KOG1538|consen 197 --AVADWGQT--LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR--DGVR--------------- 255 (1081)
T ss_pred --EEEeccce--eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee--cCeE---------------
Confidence 23334311 011111110 1110 22232 888888998888776541 1111
Q ss_pred EeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 441 ~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
..+.-.....|++|+..|+|+++++|+.||++ .||+..
T Consensus 256 ----LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 256 ----LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ----EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 11111223469999999999999999999999 999754
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.50 E-value=1.9e-13 Score=147.91 Aligned_cols=202 Identities=21% Similarity=0.312 Sum_probs=141.9
Q ss_pred EcCCCcEEEE--EecCCeEEEEeccCCCcceEE-EeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCC
Q 002405 264 IAPEQQILAV--GTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 264 ~sp~~~~la~--g~~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
|..+...+|+ .+..|.|.||++...|++-.. +.+.. ....|+++.|.| |...||+|++||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc------cCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 3344556665 456799999999886643221 11111 345799999999 8899999999999999999654
Q ss_pred eeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec----cceeeecccCCCee
Q 002405 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTY 415 (927)
Q Consensus 340 ~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~ 415 (927)
-+- +...+ .-..+..|.+.|+.+.| .+.+++++.|.+++
T Consensus 661 gl~------------------------e~~~t-------------Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 661 GLP------------------------ENEMT-------------PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE 703 (1012)
T ss_pred CCC------------------------cccCC-------------cceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence 211 00010 11223456677755555 67788999999999
Q ss_pred eeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccce
Q 002405 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 494 (927)
Q Consensus 416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e 494 (927)
+||+..+.. -..+.+|.+.|..++|||||+.+|+.+.||.+ +|+..++.-.. .|
T Consensus 704 lWDl~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv-----~E 758 (1012)
T KOG1445|consen 704 LWDLANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV-----YE 758 (1012)
T ss_pred eeehhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc-----cc
Confidence 999988776 45678999999999999999999999999999 99998875333 22
Q ss_pred eeeEE--E--EEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 002405 495 QKIQS--K--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (927)
Q Consensus 495 ~~~~v--~--~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~ 534 (927)
....+ + .+.|. +.++|+.+ .+..+..++.+|+.+.++-.
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~G-fdk~SeRQv~~Y~Aq~l~~~ 803 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVG-FDKSSERQVQMYDAQTLDLR 803 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEec-ccccchhhhhhhhhhhccCC
Confidence 22222 2 26674 66666543 34456788999998766643
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.50 E-value=5e-13 Score=134.94 Aligned_cols=210 Identities=13% Similarity=0.160 Sum_probs=149.1
Q ss_pred CCCCeE-EEEEcCC----CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcC
Q 002405 255 GSGDAV-CASIAPE----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKS 328 (927)
Q Consensus 255 ~h~~~v-~v~~sp~----~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~D 328 (927)
.|.... .++|+-+ ..++|.|+.-|.|||.|+.+ +.+...+.+ |.+.|+.+.|.|+ .+++.+||.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g--------hG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG--------HGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec--------cCccchhhhcCCCCCcEEEEecCC
Confidence 455555 7888764 45899999999999999988 778888888 9999999999996 4799999999
Q ss_pred CcEEEEEccCCeeEEEecc--ccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEE----------------
Q 002405 329 RGLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA---------------- 387 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~--~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~---------------- 387 (927)
.+||+|++.+..++..+.| .|...|.++.|++++ ..++|++ ++++|++...+...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p 233 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP 233 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence 9999999999999998865 348899999999999 8888887 89999987432211
Q ss_pred ------------EEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCc
Q 002405 388 ------------IEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (927)
Q Consensus 388 ------------~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (927)
+..-|...|-++.+ |+.++|-|-++.|..|...+-++.+--+...+.... +...+...+..
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T------i~~~~~~~~c~ 307 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT------ILGEFDYPMCD 307 (385)
T ss_pred CCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcccee------eeeEeccCccc
Confidence 11124444444445 777788888888888876332222110000000000 01122222334
Q ss_pred eEEE--EEccCCCEEEEEeCCceE-EEEccCC
Q 002405 455 VQHV--AASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 455 I~~v--a~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
|+.+ +|+|-+++||.|++.|.+ +||+...
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 4444 567889999999999999 9999764
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.50 E-value=6.4e-12 Score=130.55 Aligned_cols=139 Identities=15% Similarity=0.267 Sum_probs=109.5
Q ss_pred eEEEEEeCCc-EEEEeeecCccceeeecccce------------ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 222 LLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 222 ~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~------------~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
+.+.+..++. .++++..|..+++|.....+. +..|..+| ++.|+|+|.+||+|+++|.|.+|....
T Consensus 17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence 3344455555 899999999999997653221 15799999 999999999999999999999998762
Q ss_pred C------C-----c----ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccc
Q 002405 288 S------A-----S----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (927)
Q Consensus 288 ~------~-----~----~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~ 352 (927)
. . . ..+.+.+ |...|..++|+||+.++++|+-|.++++||+..|.+.+.+.+| ...
T Consensus 97 ~~~~~~d~e~~~~ke~w~v~k~lr~--------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~y 167 (434)
T KOG1009|consen 97 VRIFDADTEADLNKEKWVVKKVLRG--------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHY 167 (434)
T ss_pred cCCccccchhhhCccceEEEEEecc--------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-ccc
Confidence 0 1 0 1123333 9999999999999999999999999999999999999999888 677
Q ss_pred eecceecCCCCCCcccccccc
Q 002405 353 ISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~ 373 (927)
|..+++.|-+ +++++-+
T Consensus 168 vqgvawDpl~----qyv~s~s 184 (434)
T KOG1009|consen 168 VQGVAWDPLN----QYVASKS 184 (434)
T ss_pred cceeecchhh----hhhhhhc
Confidence 8888887766 5555433
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.49 E-value=8e-13 Score=144.05 Aligned_cols=249 Identities=14% Similarity=0.095 Sum_probs=160.8
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCCC-cEEEEEec
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQ-QILAVGTR 276 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~~-~~la~g~~ 276 (927)
+..|...|.++.| -|--..+++.+.|.+++.||....... .||...| +++|.|.. ..+++|+.
T Consensus 96 ~~aH~nAifDl~w----------apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 96 PLAHKNAIFDLKW----------APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred cccccceeEeecc----------CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC
Confidence 4567888888877 352336778889999999998765432 7899999 99999964 57999999
Q ss_pred CCeEEEEeccCCCc-ce----E----EEeee--c-------CCCCCCCCCCeeE---EEECCCCCEEEEEEc-CCcEEEE
Q 002405 277 RGVVELYDLAESAS-LI----R----TVSLY--D-------WGYSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTVW 334 (927)
Q Consensus 277 Dg~V~vwd~~~~~~-~~----~----~l~~~--~-------~~~~~~h~~~V~~---l~~spdg~~Lasg~~-Dg~v~vW 334 (927)
||.|.|||+...+. .. . ..++. . ..-..+|.+.+.+ +-+..|...||+++. |++|+||
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW 245 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence 99999999965220 00 0 00000 0 0001135555555 666789999999998 9999999
Q ss_pred EccCCeeEEEec------c--cc--ccceecceecCCCCCCcccccccc--eeEEEcCCCceE--EEEEcCCc---ceE-
Q 002405 335 SVSGCRLMSTIR------Q--IS--LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL--YAIEEGSS---ERV- 396 (927)
Q Consensus 335 ~~~~~~~~~~l~------~--~~--~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l--~~~~~~~~---~~v- 396 (927)
|+.........+ - |. ...+.++.....| ...++++. +|.+|+..+... .....++. -.+
T Consensus 246 DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG---t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk 322 (720)
T KOG0321|consen 246 DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG---TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK 322 (720)
T ss_pred eecccccccccCCCcccCccCcccceeeeEEEEecCCC---CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee
Confidence 997543322211 0 10 0112233332222 12334443 788888765432 22222221 112
Q ss_pred EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC-CCEEEEEeCCc
Q 002405 397 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHG 474 (927)
Q Consensus 397 ~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd-G~~la~ag~dg 474 (927)
-.+++ +.++++|+.|...++|.+...... |..+.||.-.|.+|+|.|. -.-+|++++|-
T Consensus 323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~-------------------~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 323 SELSPDDCSLLSGSSDEQAYIWVVSSPEAP-------------------PALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred eecCCCCceEeccCCCcceeeeeecCccCC-------------------hhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 34455 788999999999999988765552 6678899999999999664 23455669998
Q ss_pred eE-EEEccCCc
Q 002405 475 LI-LYDIRQKK 484 (927)
Q Consensus 475 ~i-~wd~~s~~ 484 (927)
.+ +|++..+.
T Consensus 384 ~~kiW~l~~~l 394 (720)
T KOG0321|consen 384 RVKIWRLSNGL 394 (720)
T ss_pred ceEEEeccCch
Confidence 88 99996553
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.49 E-value=5.6e-13 Score=136.81 Aligned_cols=200 Identities=15% Similarity=0.204 Sum_probs=151.6
Q ss_pred cCCCCeE-EEEEcCC--CcEEEEEecCCeEEEEeccCC---------------CcceEEEeeecCCCCCCCCCCeeEEEE
Q 002405 254 LGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAES---------------ASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~--~~~la~g~~Dg~V~vwd~~~~---------------~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (927)
.+|.+.+ .+..++- ..+.|+=+..|.|+||++... .+++.++.+ |.+.=..++|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g--------hk~EGy~LdW 219 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG--------HKGEGYGLDW 219 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc--------cCccceeeec
Confidence 4566777 6666664 456777778899999998541 123445555 8888899999
Q ss_pred CCCC-CEEEEEEcCCcEEEEEccCCeeE---EEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCc---eE
Q 002405 316 TPDN-SAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RL 385 (927)
Q Consensus 316 spdg-~~Lasg~~Dg~v~vW~~~~~~~~---~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~---~l 385 (927)
||-- ..|++|..-+.|.+|...++.-. ..+.+| ..+|-.+.+||... ..++|++ ++++||.+.+ .+
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE~---~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWSPTED---GVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccCCccC---ceEEeeecCceEEEEEecCCCccce
Confidence 9932 25778888899999998776422 234565 88899999999862 5667776 9999999876 34
Q ss_pred EEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEcc
Q 002405 386 YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (927)
Q Consensus 386 ~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~sp 462 (927)
+.+ +.|.+.|.++++ ...+++|+.||+.++||+++-+.. +....|..|+.||+++.|+|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred eEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEecc
Confidence 444 788889988888 236899999999999999865432 12457889999999999999
Q ss_pred C-CCEEEEEeCCceE-EEEccCC
Q 002405 463 D-GMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 463 d-G~~la~ag~dg~i-~wd~~s~ 483 (927)
. ...+|++|.|..+ +||+...
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ccCceEEeccCCCcEEEEEeecc
Confidence 5 5678888899999 9998653
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.2e-12 Score=126.81 Aligned_cols=278 Identities=11% Similarity=0.081 Sum_probs=175.6
Q ss_pred ccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeE
Q 002405 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHM 145 (927)
Q Consensus 68 G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l 145 (927)
+...++.||+-|.+||+|..+|.+.|||+.+-.-... +..+.-+|+ |.++++..|
T Consensus 24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~-----------------------lsaH~~pi~sl~WS~dgr~L 80 (405)
T KOG1273|consen 24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM-----------------------LSAHVRPITSLCWSRDGRKL 80 (405)
T ss_pred CccceEEeccCcceeeeeccCCcEEEEEccccchhhh-----------------------hhccccceeEEEecCCCCEe
Confidence 4467999999999999999999999999974331111 222233444 446678889
Q ss_pred EEEecCCcEEEEecCCccc-cceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCc-ceE
Q 002405 146 LLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLL 223 (927)
Q Consensus 146 ~v~~~dg~i~~~~w~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~ 223 (927)
++++.|..+..|+.-.... .+. .-.++|....|+|.. +.+
T Consensus 81 ltsS~D~si~lwDl~~gs~l~ri--------------------------------------rf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRI--------------------------------------RFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred eeecCCceeEEEeccCCCceeEE--------------------------------------EccCccceeeeccccCCeE
Confidence 9999999998765432211 111 012344445555543 222
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccceecCCCCeE--EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV--CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v--~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
++.--+-.-.+...++..-++.-... .+..+.+ +..|.+.|+++.+|..-|.+.+|+..+ .+++..++.
T Consensus 123 va~~~~~sp~vi~~s~~~h~~Lp~d~----d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~ri---- 193 (405)
T KOG1273|consen 123 VATIMEESPVVIDFSDPKHSVLPKDD----DGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRI---- 193 (405)
T ss_pred EEEEecCCcEEEEecCCceeeccCCC----ccccccccccccccCCCCEEEEecCcceEEEEecch-heeeeeeee----
Confidence 22222222222222222111110000 1111222 557999999999999999999999988 777877776
Q ss_pred CCCCCC-CCeeEEEECCCCCEEEEEEcCCcEEEEEccC-------Cee--EEEeccc-cccceecceecCCCCCCccccc
Q 002405 302 YSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-------CRL--MSTIRQI-SLSSISSPIVKPNQDCKYEPLM 370 (927)
Q Consensus 302 ~~~~h~-~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~-------~~~--~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~ 370 (927)
.+ ..|..+.++-.|++|+.-..|+.||.++... +++ .+.+..- ....-..+.|+.++ +++.
T Consensus 194 ----ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~ 265 (405)
T KOG1273|consen 194 ----TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVC 265 (405)
T ss_pred ----chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEE
Confidence 33 6799999999999999999999999999852 111 1111110 01123467788888 7776
Q ss_pred ccc----eeEEEcCCCceEEEEEcCCcce-EEE--EeccceeeecccCCCeeeeeeeecC
Q 002405 371 SGT----SMMQWDEYGYRLYAIEEGSSER-VLI--FSFGKCCLNRGVSGMTYARQVIYGE 423 (927)
Q Consensus 371 sg~----~~~~W~~~~~~l~~~~~~~~~~-v~~--~~~~~~~~s~s~d~~~~~w~~~~~~ 423 (927)
.|+ ...+|....|.|+..+.|..+. ++. ..+.+.++..-..|++++|...+-.
T Consensus 266 a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 266 AGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVE 325 (405)
T ss_pred eccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeeccc
Confidence 665 6789999999999999887643 333 4444444444477889999876543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.47 E-value=3.3e-12 Score=135.10 Aligned_cols=286 Identities=12% Similarity=0.193 Sum_probs=184.3
Q ss_pred EEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCc--EEEEEEEEecCceeecCCCCC
Q 002405 33 LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITEKSIQIGGKQP 110 (927)
Q Consensus 33 lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg--~l~i~~l~~~~~~~~~~~~~~ 110 (927)
+.++.+.++++|||+. .......+. ..-..+| +.+++|+... +|+|++..| .+++|.-. +. .
T Consensus 5 l~~aS~gd~~kl~D~s-~~~~~~~~~---~~t~~pg-~~s~~w~~~n-~lvvas~~gdk~~~~~~K~-g~---~------ 68 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFS-DLETKSEYV---HQTAEPG-DFSFNWQRRN-FLVVASMAGDKVMRIKEKD-GK---T------ 68 (673)
T ss_pred eeeeccCCceEEeecc-cccCccccc---cCCCCCc-ceeeeccccc-eEEEeecCCceeEEEeccc-CC---C------
Confidence 5555667789999985 211111110 0012345 5789998764 377776544 56666432 11 0
Q ss_pred CCccceeeeEEeecccccccccceEEEeecc--CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCC
Q 002405 111 SGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (927)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 188 (927)
++.++- +. ..+. .-.|+++. .-+++.|+.+|.|.+|+.......
T Consensus 69 ~~Vp~~-------~k--~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h----------------------- 114 (673)
T KOG4378|consen 69 PEVPRV-------RK--LTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH----------------------- 114 (673)
T ss_pred Ccccee-------ec--cccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh-----------------------
Confidence 000000 00 0111 11233332 256777788899998654422111
Q ss_pred CCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCC
Q 002405 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPE 267 (927)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~ 267 (927)
-.+.+|+..|+++.|+....+++.++-.|.+++-+...+.-. +. ..-+....| -+.++|.
T Consensus 115 -------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-----t~-f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 115 -------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-----TT-FTIDSGQSVRLLRYSPS 175 (673)
T ss_pred -------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc-----cc-eecCCCCeEEEeecccc
Confidence 124577889999999888888888887777777554332100 00 002234567 7899996
Q ss_pred Cc-EEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 268 QQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 268 ~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
.+ +|.+++.+|+|.+||+.. ..++..+.. .|+.|...|+|||. ...|++-+.|+.|.+||....+...++
T Consensus 176 kr~lL~~asd~G~VtlwDv~g-~sp~~~~~~-------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQG-MSPIFHASE-------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred cceeeEeeccCCeEEEEeccC-CCcccchhh-------hccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 55 577899999999999986 555544332 29999999999995 558889999999999999887776666
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCC-ceEEEEEcCCcceEEEEec
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF 401 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~~ 401 (927)
.. ..+.++++|+++| .+++.|. .+..+|..+ ...+.+...|+..|..++|
T Consensus 248 ~y--~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 248 TY--SHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ee--cCCcceeeecCCc----eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 54 3568899999999 7777665 788899875 4567777888888866666
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.8e-13 Score=156.26 Aligned_cols=198 Identities=15% Similarity=0.213 Sum_probs=145.7
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--c---CCCCeE-EEEEcCC-CcEEEEEec
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--L---GSGDAV-CASIAPE-QQILAVGTR 276 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~---~h~~~v-~v~~sp~-~~~la~g~~ 276 (927)
...|.+.|..++|++.. |..+++|.+++.|.+||+.+.+.- . .-.+-| |++||.+ ...||+|+.
T Consensus 112 ~~~h~G~V~gLDfN~~q---------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQ---------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred hcccCCceeeeeccccC---------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence 34678889998875422 347888889999999998875432 1 123456 9999986 567999999
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCC--CCeeEEEECCCCC-EEEEEEcCC---cEEEEEccC-CeeEEEecccc
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDT--GPVSCIAWTPDNS-AFAVGWKSR---GLTVWSVSG-CRLMSTIRQIS 349 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~--~~V~~l~~spdg~-~Lasg~~Dg---~v~vW~~~~-~~~~~~l~~~~ 349 (927)
+|.+.|||++. .+.+-.+.. |. ..+..++|+||+. .|+++++|. .|.+||+.- ....+.+++|
T Consensus 183 sg~~~iWDlr~-~~pii~ls~--------~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H- 252 (1049)
T KOG0307|consen 183 SGRAVIWDLRK-KKPIIKLSD--------TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH- 252 (1049)
T ss_pred CCCceeccccC-CCccccccc--------CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-
Confidence 99999999987 455544444 33 3478999999864 677777654 689999843 3466677777
Q ss_pred ccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec----cceeeecccCCCeeeeeeeec
Q 002405 350 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 350 ~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~~w~~~~~ 422 (927)
...|.++.|++.+. .+++|++ .+++|++++++.+..+....+.+..+.| -..++.++.||.+.++.+..+
T Consensus 253 ~~GilslsWc~~D~---~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDP---RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ccceeeeccCCCCc---hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 88899999988763 4556555 8999999999998888766666755555 235677889999988876544
Q ss_pred C
Q 002405 423 E 423 (927)
Q Consensus 423 ~ 423 (927)
.
T Consensus 330 ~ 330 (1049)
T KOG0307|consen 330 D 330 (1049)
T ss_pred C
Confidence 3
No 165
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.45 E-value=5.2e-13 Score=149.63 Aligned_cols=333 Identities=16% Similarity=0.176 Sum_probs=178.9
Q ss_pred ceEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCc
Q 002405 454 PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQ 533 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~ 533 (927)
..++++++|+|++++++|.....+|.....+-+.++ ....++|.++.-.+. . +....+.+|.- +.+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G--------~g~~~vw~~~n~yAv-~---~~~~~I~I~kn--~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG--------SGLSFVWSSRNRYAV-L---ESSSTIKIYKN--FKN 99 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE--------E-SEEEE-TSSEEEE-E----TTS-EEEEET--TEE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC--------ceeEEEEecCccEEE-E---ECCCeEEEEEc--Ccc
Confidence 467899999999999977666669986554444332 244678975433222 1 22456777622 222
Q ss_pred cceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeccccCCCceEEEccCCCcc
Q 002405 534 SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPR 613 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~~p~~v~~i~~~~~~ 613 (927)
... ....++ ...-..+++.|+...+++.+.+|++.-. + .+++|.+. .|+.|.|..
T Consensus 100 ~~~-k~i~~~--~~~~~If~G~LL~~~~~~~i~~yDw~~~-~------------~i~~i~v~-------~vk~V~Ws~-- 154 (443)
T PF04053_consen 100 EVV-KSIKLP--FSVEKIFGGNLLGVKSSDFICFYDWETG-K------------LIRRIDVS-------AVKYVIWSD-- 154 (443)
T ss_dssp -TT------S--S-EEEEE-SSSEEEEETTEEEEE-TTT---------------EEEEESS--------E-EEEEE-T--
T ss_pred ccc-eEEcCC--cccceEEcCcEEEEECCCCEEEEEhhHc-c------------eeeEEecC-------CCcEEEEEC--
Confidence 110 111122 2233344466666677778999988521 1 14455533 134444542
Q ss_pred cccccCCCCCcccccccCCceEEEEeeCCEEEEEecCCC---ceeeeccceeEEEEcCCCCccccCccceeeEEEECCCC
Q 002405 614 ECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDG---RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG 690 (927)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~lil~~~g~l~~l~~~~~---~~~~l~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~g 690 (927)
..+.+++......+|+..+-+.+.-..++| .-.++.+-.|+ +.++.|.++ .++|+..+
T Consensus 155 ---------~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~--IkSg~W~~d--------~fiYtT~~ 215 (443)
T PF04053_consen 155 ---------DGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISER--IKSGCWVED--------CFIYTTSN 215 (443)
T ss_dssp ---------TSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S----SEEEEETT--------EEEEE-TT
T ss_pred ---------CCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecce--eEEEEEEcC--------EEEEEcCC
Confidence 112222211222333332222111111122 12344443344 333334443 38898888
Q ss_pred cEEeccCCCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeeccc-CcCccceecCCcceecHHHHHHHHH
Q 002405 691 MQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-CTEFPCFEPTPQAQTILHCLLRHLL 769 (927)
Q Consensus 691 ~~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~l~~ll 769 (927)
++-| +.+++ ..+.-+++..+|.++++++++.++.++.+..+.+ .++...+++ +..|
T Consensus 216 -~lkY-l~~Ge---------~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~f------------k~av 272 (443)
T PF04053_consen 216 -HLKY-LVNGE---------TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEF------------KTAV 272 (443)
T ss_dssp -EEEE-EETTE---------EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHH------------HHHH
T ss_pred -eEEE-EEcCC---------cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHH------------HHHH
Confidence 9998 43332 2233456788999999999999999987632211 223333443 4467
Q ss_pred HccCHHHHHHHHHHcCCCCCchHHHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHhcchhHHHHhhhc
Q 002405 770 QRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVA 849 (927)
Q Consensus 770 ~~~~~~~a~~~~~~~~~l~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~l~ivv~c~ 849 (927)
.|++.+++..+.+. ..++ | .||. ++..++++||+.. +|.|+..+++
T Consensus 273 ~~~d~~~v~~~i~~---------------~~ll--------~-----~i~~-----~~~~~i~~fL~~~-G~~e~AL~~~ 318 (443)
T PF04053_consen 273 LRGDFEEVLRMIAA---------------SNLL--------P-----NIPK-----DQGQSIARFLEKK-GYPELALQFV 318 (443)
T ss_dssp HTT-HHH-----HH---------------HHTG--------G-----G--H-----HHHHHHHHHHHHT-T-HHHHHHHS
T ss_pred HcCChhhhhhhhhh---------------hhhc--------c-----cCCh-----hHHHHHHHHHHHC-CCHHHHHhhc
Confidence 77888886654200 0011 1 3664 7889999999988 9999999999
Q ss_pred ccccccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhH
Q 002405 850 RKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELV 923 (927)
Q Consensus 850 RK~e~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~ 923 (927)
+..+.+ |+.+|+.|+|++|..+..- ..+.++|.+|.++||++|+.++|.+-.
T Consensus 319 ~D~~~r---------------FeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 319 TDPDHR---------------FELALQLGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp S-HHHH---------------HHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CChHHH---------------hHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999 9999999999999998873 346779999999999999999998754
No 166
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.6e-12 Score=136.16 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=129.7
Q ss_pred CCceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
+.+.+++|+.||+++|++ +|++++||+.. ... .-..-.++++++.++.|||||+.||+-+.| ..++|+++.
T Consensus 145 g~~k~vaf~~~gs~latgg~dg~lRv~~~P-s~~------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDGTLRVWEWP-SML------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred CcceEEEEcCCCCEeeeccccceEEEEecC-cch------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 567999999999999998 59999999973 111 111234678999999999999999999999 799999985
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
+... ...... +.++++..+. +.-+... .
T Consensus 217 g~~~-a~~t~~-------------------------------~k~~~~~~cR------F~~d~~~-~------------- 244 (398)
T KOG0771|consen 217 GAAL-ARKTPF-------------------------------SKDEMFSSCR------FSVDNAQ-E------------- 244 (398)
T ss_pred Cchh-hhcCCc-------------------------------ccchhhhhce------ecccCCC-c-------------
Confidence 5211 000000 0011110000 0000000 0
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeec----ccceec
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI----KIDKEL 254 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~----~~~~~~ 254 (927)
... .++...|-|.+.. .+ +.+|+.. ..+...
T Consensus 245 --------------------------------~l~--------laa~~~~~~~v~~---~~--~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 245 --------------------------------TLR--------LAASQFPGGGVRL---CD--ISLWSGSNFLRLRKKIK 279 (398)
T ss_pred --------------------------------eEE--------EEEecCCCCceeE---EE--eeeeccccccchhhhhh
Confidence 000 0000011111111 01 1123221 111113
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 255 ~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
.+....++++|++|+++|.|+.||.|.|++..+ .+.++..+. .|.+.|+.+.|+||.+++++-+.|.+..|.
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 344444999999999999999999999999876 444444333 399999999999999999999999999988
Q ss_pred EccC
Q 002405 335 SVSG 338 (927)
Q Consensus 335 ~~~~ 338 (927)
.+..
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 8754
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.3e-13 Score=158.07 Aligned_cols=228 Identities=18% Similarity=0.225 Sum_probs=170.4
Q ss_pred EEEEeeecCccceeeeccc---ce------ecCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 232 LMSCSVSKKGLKLAEFIKI---DK------ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 232 ~~~~~~~d~~~~~w~~~~~---~~------~~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
+++.|..||.+.+|+.... .. ...|.+.| .+.||+... +||+|+.||.|.|||+.. .+.-.+..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn-~~tP~~~~---- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK-PETPFTPG---- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC-cCCCCCCC----
Confidence 4677778888888886542 11 15799999 999999755 999999999999999986 22111111
Q ss_pred CCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccc-cceecceecCCCCCCcccccccc----e
Q 002405 301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSGT----S 374 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~s~~~sp~~~~~~~~l~sg~----~ 374 (927)
+..-.+.|.+++|+. ..+.||+++.+|...|||+...+.+-.+..++. ..++.++|+|+.. +.-.++++. .
T Consensus 157 --~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 157 --SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPV 233 (1049)
T ss_pred --CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCce
Confidence 112467899999997 567899999999999999998877777766533 3478899999973 222334443 7
Q ss_pred eEEEcCCC-ceEEEEEcCCcceEEEEec----cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc
Q 002405 375 MMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (927)
Q Consensus 375 ~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (927)
+.+||.+. ...+.++.+|..+|+.+++ .+.++|.+.|+.+..|+..+++. ...+-
T Consensus 234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--------------------l~~~p 293 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--------------------LGELP 293 (1049)
T ss_pred eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------------------eeecC
Confidence 89999754 3455666899999999988 36789999999999999876553 22222
Q ss_pred cCCCceEEEEEccCCC-EEEEEeCCceE-EEEccCCcEEe
Q 002405 450 SQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV 487 (927)
Q Consensus 450 ~~~~~I~~va~spdG~-~la~ag~dg~i-~wd~~s~~w~~ 487 (927)
.....+..+.|.|... .+|+++-||.| +|++.+..|..
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 2445688899999765 89999999999 99998876543
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.44 E-value=7.9e-10 Score=125.43 Aligned_cols=356 Identities=21% Similarity=0.289 Sum_probs=219.2
Q ss_pred ceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEE-cCCcc-EEEEEec-CcEEEEEEEE
Q 002405 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKVQ 97 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-spDg~-~Lav~t~-dg~l~i~~l~ 97 (927)
...+.|.+++..++..+ ++.+.+|+.......+..+..... ..+..+.+ ++++. .++..+. ++.+.+|++.
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 44467888898888775 889999999643213333322111 23445555 89998 5555455 8999999987
Q ss_pred e-cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCccccceeecccCCC
Q 002405 98 I-TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSND 175 (927)
Q Consensus 98 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~ 175 (927)
. .........+. ......++.+++..++.+.. ++.+..|+-.. ....
T Consensus 143 ~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------- 191 (466)
T COG2319 143 TPGKLIRTLEGHS---------------------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPL-------- 191 (466)
T ss_pred CCCeEEEEEecCc---------------------ccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceE--------
Confidence 4 11111111111 00112355666666666664 88888754332 1111
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeecccce--
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK-- 252 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~-- 252 (927)
.....|...+.++.| +|+|. ++++++.|+.+.+|+...+..
T Consensus 192 --------------------------~~~~~~~~~v~~~~~----------~~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 192 --------------------------STLAGHTDPVSSLAF----------SPDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred --------------------------EeeccCCCceEEEEE----------cCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 011225556777665 46776 444447788888886553322
Q ss_pred --ecCCCCeEEE-EEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC
Q 002405 253 --ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (927)
Q Consensus 253 --~~~h~~~v~v-~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg 329 (927)
..+|.... + .|+|++.++++++.|+.+++|+..........+.. |...|.++.|+|++..+++++.|+
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~ 306 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG--------HSSSVLSVAFSPDGKLLASGSSDG 306 (466)
T ss_pred eecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec--------CCccEEEEEECCCCCEEEEeeCCC
Confidence 35666664 4 79999999999999999999999863332333333 899999999999999999999998
Q ss_pred cEEEEEccCCeeEEEec--cccccceecceecCCCCCCccccccc---ceeEEEcCCCceEEEEEcCCcc-eEEEEeccc
Q 002405 330 GLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAIEEGSSE-RVLIFSFGK 403 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~--~~~~~~v~s~~~sp~~~~~~~~l~sg---~~~~~W~~~~~~l~~~~~~~~~-~v~~~~~~~ 403 (927)
.+++|+..+........ .| ...+..+.+.+++ .....++ ..+..|+............... ....+....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (466)
T COG2319 307 TVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDG---SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382 (466)
T ss_pred cEEEEEcCCCceEEEeeeccc-CCceEEEEECCCC---CEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECCCC
Confidence 89999998777666555 45 4457777773221 1222221 2555688776652222222221 112222211
Q ss_pred eee-ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 404 CCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 404 ~~~-s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
... .+..++.+.+|+....... .....+...+....+++++..++.++.++.+ .|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 383 RVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred CEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 122 2567778888886544331 1111111678999999999999999999999 99987
Q ss_pred C
Q 002405 482 Q 482 (927)
Q Consensus 482 s 482 (927)
+
T Consensus 443 ~ 443 (466)
T COG2319 443 T 443 (466)
T ss_pred C
Confidence 7
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2e-11 Score=118.51 Aligned_cols=258 Identities=11% Similarity=0.075 Sum_probs=155.5
Q ss_pred cccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEE
Q 002405 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~ 146 (927)
+..+.+-+|||-++++++|..+|.|-+..+..-......+ .+. ..-+....+++++..+....+.++
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~--~gk-----------~~iv~eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP--PGK-----------LKIVPEQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCC--CCC-----------cceeeccccCCCeeeeeeehhhee
Confidence 4556778999999999999999999999986422111110 000 001122567788888877766555
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
++ .||.|+-|.|+.+.+..-... .--..+|...+ .-.--.|+.|. +
T Consensus 77 s~-gdG~V~gw~W~E~~es~~~K~------lwe~~~P~~~~-----------------~~evPeINam~----------l 122 (325)
T KOG0649|consen 77 SG-GDGLVYGWEWNEEEESLATKR------LWEVKIPMQVD-----------------AVEVPEINAMW----------L 122 (325)
T ss_pred ec-cCceEEEeeehhhhhhccchh------hhhhcCccccC-----------------cccCCccceeE----------e
Confidence 54 569999999986553211000 00000000000 00011233333 3
Q ss_pred EeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC-
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG- 301 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~- 301 (927)
.|...-++++..|+.+..||..+++. ..||++.+ |++--.....+.+|++||++|+||..+ ++++..+...+.+
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPN 201 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChh
Confidence 43333333444777777788877643 38999999 888766667789999999999999998 7777776653322
Q ss_pred CCCCCCC-CeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc-c-eeEEE
Q 002405 302 YSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQW 378 (927)
Q Consensus 302 ~~~~h~~-~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~~~~W 378 (927)
....|-| .|-+++- |..+|+.|+. ..+.+|++...++.+++.- ...|..+.|..+ ..++.| . .+..|
T Consensus 202 ~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpi--pa~v~~v~F~~d-----~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 202 LLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPI--PARVHLVDFVDD-----CVLIGGEGNHVQSY 271 (325)
T ss_pred hcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEec--ccceeEeeeecc-----eEEEeccccceeee
Confidence 1122333 3556554 4457777765 6899999988887777754 234566666544 333333 1 55566
Q ss_pred cCCC
Q 002405 379 DEYG 382 (927)
Q Consensus 379 ~~~~ 382 (927)
..++
T Consensus 272 ~l~G 275 (325)
T KOG0649|consen 272 TLNG 275 (325)
T ss_pred eecc
Confidence 6543
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.7e-10 Score=129.57 Aligned_cols=355 Identities=18% Similarity=0.172 Sum_probs=219.3
Q ss_pred eEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe-cCc
Q 002405 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEK 101 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~-~~~ 101 (927)
.+|.+++.|.+...+....+.+|.+.++....+.+ ...+.+.-..++.++||.++++|++..||.|.+|.=-. +..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~---~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSR---DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccc---hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 45779999999999999999999996443222222 22233333367899999999999999999999996321 111
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccc--cceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEK--GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
.... . .+.-+ .....+++.++.+++.|+..|.+.+|..+... .++
T Consensus 241 ~~t~----------t----------~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf------------ 287 (792)
T KOG1963|consen 241 SETC----------T----------LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF------------ 287 (792)
T ss_pred cccc----------e----------EEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccc------------
Confidence 1100 0 01112 22334678889999999999988775443222 221
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccce-eeeccc---ceecC
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-AEFIKI---DKELG 255 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~-w~~~~~---~~~~~ 255 (927)
+..-.+.|..+.++|+...++....|.++.+....|..++. .+...+ ....+
T Consensus 288 ------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 288 ------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred ------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 11225678898988888888888888888777776655442 111111 11122
Q ss_pred CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC---CCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM---DDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~---~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
..+-+ .++++|.-+.++-.+..|.|..||+-+ .+.+..+...+..+.. .+.-++++++.+-+|.++||+-..
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t-d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~--- 419 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT-DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR--- 419 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccc-cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee---
Confidence 34444 889999888899999999999999987 4455555443322211 244567888888888888876431
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCC----ceEEE-EEcCCcceEEEEec-----
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG----YRLYA-IEEGSSERVLIFSF----- 401 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~----~~l~~-~~~~~~~~v~~~~~----- 401 (927)
-+..+ + .++ -...++|..+. ..|.. +..+|...+.+.-+
T Consensus 420 --~d~~~---------~-----------~~~---------e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 420 --IDKFN---------F-----------FDG---------EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred --ehhhh---------c-----------cCc---------eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 00000 0 000 02455664332 12211 12456655533222
Q ss_pred cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 402 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
...++|++.|+.+++|.+...++- ..-...|....+- .| |+.++.+.+||.||..||++ .++++ +||.
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~-------~k~~s~W~c~~i~-sy--~k~~i~a~~fs~dGslla~s-~~~~Itiwd~ 537 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNI-------YKKSSNWTCKAIG-SY--HKTPITALCFSQDGSLLAVS-FDDTITIWDY 537 (792)
T ss_pred cceeEEeccCCeEEEEEEeccccc-------CcCccceEEeeee-cc--ccCcccchhhcCCCcEEEEe-cCCEEEEecC
Confidence 336889999999999997533320 0112246443322 23 88899999999999888766 55556 9998
Q ss_pred cCC
Q 002405 481 RQK 483 (927)
Q Consensus 481 ~s~ 483 (927)
.+.
T Consensus 538 ~~~ 540 (792)
T KOG1963|consen 538 DTK 540 (792)
T ss_pred CCh
Confidence 763
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.40 E-value=8.8e-12 Score=125.69 Aligned_cols=228 Identities=13% Similarity=0.124 Sum_probs=152.6
Q ss_pred ecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCC
Q 002405 29 VNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG 107 (927)
Q Consensus 29 ~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~ 107 (927)
|+..++|+.+ +.-|.|||.- .+..-+.+ |.-+.+.+.-...+++|||||..|.+| .+.+|++||+.-......
T Consensus 121 P~t~l~a~ssr~~PIh~wdaf-tG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~--- 194 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAF-TGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP--- 194 (406)
T ss_pred CccceeeeccccCceeeeecc-ccccccch-hhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc---
Confidence 4566888775 7789999995 44433332 333334444445689999999999976 577899999853222110
Q ss_pred CCCCCccceeeeEEeecccccccccceEEEeeccC---CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccc
Q 002405 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH 184 (927)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~ 184 (927)
+... ...+. .+..+.+.|++.+. ..+++++-..++-++.|++.....
T Consensus 195 -------vy~t--~~~~k---~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~------------------ 244 (406)
T KOG2919|consen 195 -------VYTT--VTKGK---FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ------------------ 244 (406)
T ss_pred -------chhh--hhccc---ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee------------------
Confidence 0000 00000 12233455555433 457777777788788777543221
Q ss_pred cCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeee-cCccceeeeccccee----cCCCC-
Q 002405 185 FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----LGSGD- 258 (927)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~w~~~~~~~~----~~h~~- 258 (927)
.+.+|++.|+.+.| .+||..+++|+. +..|-.||+...... ..|.+
T Consensus 245 ------------------llggh~gGvThL~~----------~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~ 296 (406)
T KOG2919|consen 245 ------------------LLGGHGGGVTHLQW----------CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD 296 (406)
T ss_pred ------------------eecccCCCeeeEEe----------ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccC
Confidence 23478889999887 678888888775 556778998754321 34444
Q ss_pred ---eEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 259 ---AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 259 ---~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
.|-....|++++||+|+.||.|++||+++.+..+..+.. |+..|+.++++|-=..+|+++..
T Consensus 297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--------~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--------YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--------ccccccceecCcccceeeeccCc
Confidence 345566799999999999999999999986665665555 88999999999998888888754
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=4.7e-12 Score=132.97 Aligned_cols=192 Identities=14% Similarity=0.208 Sum_probs=140.4
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceE--EEe----------eecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEE
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIR--TVS----------LYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTV 333 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~--~l~----------~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~Dg~v~v 333 (927)
.|+++|+|+-|..|.|||++--..... +|. ++..-...+|+..|.+++|.-+- +.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 378999999999999999974222111 111 11011123699999999999864 58999999999999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC----ceEEEEEcCCcceEEEEec--cce
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC 404 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~~~--~~~ 404 (927)
||+.++++..++..| ...|+++.|+|..+ ..+++|+ ++.+.|.+. +.-|.. .+ .-..+.+.+ ...
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g-~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKF-DG-EVEKVAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEe-cc-ceEEEEecCCCcee
Confidence 999999999999865 78999999999864 6778887 777766542 222332 11 111244444 445
Q ss_pred eeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccC
Q 002405 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 405 ~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd-G~~la~ag~dg~i-~wd~~s 482 (927)
++.+..||+++-.|.+..... .-+...|.++|.++++++. -.+++++|.++.+ +|++..
T Consensus 345 f~~~tddG~v~~~D~R~~~~~-------------------vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKP-------------------VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCceEEeeecCCCCCc-------------------eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 677788999999998776541 3466789999999999876 4578999999999 999864
Q ss_pred C
Q 002405 483 K 483 (927)
Q Consensus 483 ~ 483 (927)
.
T Consensus 406 ~ 406 (463)
T KOG0270|consen 406 D 406 (463)
T ss_pred C
Confidence 3
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=3.3e-13 Score=150.63 Aligned_cols=225 Identities=15% Similarity=0.255 Sum_probs=163.3
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
+++++...|++++++++|.-+++|...+..++ .||...+ .++++.+..++|+++.|..|++|.+.+ +.++..+.+
T Consensus 194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg 272 (1113)
T KOG0644|consen 194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG 272 (1113)
T ss_pred eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc
Confidence 34567889999999999999999998887665 7999988 999999999999999999999999998 888888888
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc--------------CCeeEEEeccc--cc-----------
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQI--SL----------- 350 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~--------------~~~~~~~l~~~--~~----------- 350 (927)
|+|.|++++|||-- +.+.||++++||.. ++.++.++... +.
T Consensus 273 --------htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 273 --------HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred --------cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 99999999999954 77889999999985 11222222110 00
Q ss_pred --cceecceecCCC--------CCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec----cceeeecccCCC
Q 002405 351 --SSISSPIVKPNQ--------DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGM 413 (927)
Q Consensus 351 --~~v~s~~~sp~~--------~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~ 413 (927)
..+..+++..+. ..+ ....+.. ..+.|+..++++.....+|.+.++++.+ .+...+++.||.
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred ccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 000001110000 000 0111111 5678999999888888899888877766 556778999999
Q ss_pred eeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
..+||+-.+.. +..-+.+| +.+...+||+||+.++..-+-|.+ +...
T Consensus 420 t~iwdi~eg~p-------------------ik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 420 TIIWDIWEGIP-------------------IKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eEeeecccCCc-------------------ceeeeccc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999876543 11122344 456678999999999988877877 5544
No 174
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.39 E-value=1.3e-11 Score=134.78 Aligned_cols=275 Identities=13% Similarity=0.193 Sum_probs=158.8
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEE--EeeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcC
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT--VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKS 328 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~--l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~D 328 (927)
+..|..++ .+.|-|....|++++.|.++++||+.. +++... +.+ |++.|.+++|.|+. ..+++|+.|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~G--------H~~SvkS~cf~~~n~~vF~tGgRD 166 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNLG--------HTGSVKSECFMPTNPAVFCTGGRD 166 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeecc--------cccccchhhhccCCCcceeeccCC
Confidence 47899999 999999777899999999999999987 655544 555 99999999999955 588999999
Q ss_pred CcEEEEEccCCeeEEEeccccccceecce---ecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec--cc
Q 002405 329 RGLTVWSVSGCRLMSTIRQISLSSISSPI---VKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--GK 403 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~s~~---~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~ 403 (927)
|.+.|||+.-.. +..+... ...++.-. -.|. .++. ..+.-|-..+..+ .+.|..+-| ..
T Consensus 167 g~illWD~R~n~-~d~~e~~-~~~~~~~~n~~ptps-----kp~~--kr~~k~kA~s~ti-------~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 167 GEILLWDCRCNG-VDALEEF-DNRIYGRHNTAPTPS-----KPLK--KRIRKWKAASNTI-------FSSVTVVLFKDES 230 (720)
T ss_pred CcEEEEEEeccc-hhhHHHH-hhhhhccccCCCCCC-----chhh--ccccccccccCce-------eeeeEEEEEeccc
Confidence 999999985332 1111100 00000000 0011 1111 1222232222211 112323333 45
Q ss_pred eeeeccc-CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC---CCceEEEEEccCCCEEEEEeCCceE-EE
Q 002405 404 CCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (927)
Q Consensus 404 ~~~s~s~-d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~I~~va~spdG~~la~ag~dg~i-~w 478 (927)
.++|++. |+++++||+..... .++..... ...+..| .-.+.++..+..|.+|.+.+.|+.| .|
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~---~~r~ep~~---------~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYT---AYRQEPRG---------SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred eeeeccCCCcceEEEeeccccc---ccccCCCc---------ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 6677665 99999999975432 01100000 0112222 2236677778889999988899999 99
Q ss_pred EccCCcEEeeCCcc--ceeeeEEE-EEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCcc---ceeEEEecCCccEEEEcc
Q 002405 479 DIRQKKWRVFGDIT--QEQKIQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS---SLLCRKSLLAKPIVMDVY 552 (927)
Q Consensus 479 d~~s~~w~~f~~~~--~e~~~~v~-~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 552 (927)
|+.+-.-....... .-..|.+. .+.|.+.+++.+.. +.+..+|...+.... ...+...+ ..+...+.
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-----d~~ayiw~vs~~e~~~~~l~Ght~eV--t~V~w~pS 371 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-----DEQAYIWVVSSPEAPPALLLGHTREV--TTVRWLPS 371 (720)
T ss_pred eccccCcCchhhccCcccceeeeeeecCCCCceEeccCC-----CcceeeeeecCccCChhhhhCcceEE--EEEeeccc
Confidence 99765432111111 11224444 57888889988733 344455555322211 11222221 12233332
Q ss_pred C-CEEEEEEcCCeEEEEEEE
Q 002405 553 E-DYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 553 ~-~~l~v~~~d~~i~l~~~~ 571 (927)
. .-+++.++|.++++|++.
T Consensus 372 ~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cCCCceeeccCcceEEEecc
Confidence 2 236666899999999995
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=3.5e-12 Score=137.72 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=149.4
Q ss_pred EEEeCCcEEEEeeecCccceeeecccc-----------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC---
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--- 289 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~-----------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--- 289 (927)
.+.+--..+++++.|+++++|++.+.. .+.+|.++| |+++.+++..+.+|+-||+|+.|++....
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ 380 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD 380 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc
Confidence 345566678899999999999883211 126899999 99999999999999999999999774211
Q ss_pred ------cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccc-cceecceecCCC
Q 002405 290 ------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQ 362 (927)
Q Consensus 290 ------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~s~~~sp~~ 362 (927)
....++.+ |++.|+.+++|+....|++++.||+++.|...+... +++..... .--.++.+-...
T Consensus 381 ds~dp~vl~~~l~G--------htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 381 DSYDPSVLSGTLLG--------HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred cccCcchhccceec--------cccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccch
Confidence 12334455 999999999999999999999999999999876655 44432100 001111111110
Q ss_pred CCCcccccccceeEEEcC---CCceEEEEEcC----------CcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEe
Q 002405 363 DCKYEPLMSGTSMMQWDE---YGYRLYAIEEG----------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (927)
Q Consensus 363 ~~~~~~l~sg~~~~~W~~---~~~~l~~~~~~----------~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~ 429 (927)
-....+........+ +...-++++.. +...|+.-+-+....++..|..+++++...++-
T Consensus 452 ---~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~----- 523 (577)
T KOG0642|consen 452 ---PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI----- 523 (577)
T ss_pred ---hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc-----
Confidence 000000011111111 11111222111 112222222255667888888888888766543
Q ss_pred ecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
......|...++++++.|+|-+|++++.||.+ +|.+..+
T Consensus 524 ---------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 ---------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ---------------chheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 45566788889999999999999999999999 9987654
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.38 E-value=5.5e-11 Score=118.24 Aligned_cols=215 Identities=18% Similarity=0.190 Sum_probs=153.9
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTV 333 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~v 333 (927)
-+.+ |+.|.|++..+|+-. |..|.+|+++...+....+.. +.+.+|....++-+||| ||+.+++.++ +++..
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~~ 197 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQF 197 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeCC-CcEEE
Confidence 3466 999999999998855 889999999873222333322 12223666788899999 8999998875 89999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC-ceEEEEEcCCcceEEEEec----ccee
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCC 405 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~ 405 (927)
||+.+......++..|...|..+.|+|+. ...+++++ .+++||.+. ...+..+.+|...++++.| -+.+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99998888888887557789999999985 24567765 899999865 4567778899999977776 5678
Q ss_pred eecccCCCeeeeeeeecCCeEEEeecCCCCcc-----eEEEeec----CcccccCCCceEEEEEccCCC-EEEEEeCCce
Q 002405 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL-----KILHLNL----PVSYISQNWPVQHVAASKDGM-FLAVAGLHGL 475 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~-----~w~~~~~----~~~~~~~~~~I~~va~spdG~-~la~ag~dg~ 475 (927)
+|++.|..+.+|....-....-+..+.+.++. .-++..+ ..+|..|.+.|.+++||.-.. .+|+-+.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 99999999988875433322222222222111 0111122 347889999999999976555 5678899999
Q ss_pred EEEE
Q 002405 476 ILYD 479 (927)
Q Consensus 476 i~wd 479 (927)
++-+
T Consensus 355 viIs 358 (370)
T KOG1007|consen 355 VIIS 358 (370)
T ss_pred EEee
Confidence 8544
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.37 E-value=3e-11 Score=124.95 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=145.8
Q ss_pred cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCC------cceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEE
Q 002405 254 LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAV 324 (927)
Q Consensus 254 ~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~------~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Las 324 (927)
.||..+| .++|+| +...||+||+|.+|.||.+...+ +.+..|.+ |+..|.-|+|+|- .+.|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g--------H~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG--------HQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee--------cceeEEEEeecccchhhHhh
Confidence 6899999 999999 67789999999999999997632 24556667 9999999999995 568999
Q ss_pred EEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcce----EE
Q 002405 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VL 397 (927)
Q Consensus 325 g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~----v~ 397 (927)
++.|.+|.+|++.++..+-++. | ..-|.++.|+.+| ..+++.+ .+++|++..++++....+|.+. ++
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-h-pd~i~S~sfn~dG----s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-H-PDMVYSMSFNRDG----SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-C-CCeEEEEEeccCC----ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 9999999999999999888887 5 8889999999999 8888777 8999999999998887777542 33
Q ss_pred EEeccceeeeccc----CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC-
Q 002405 398 IFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL- 472 (927)
Q Consensus 398 ~~~~~~~~~s~s~----d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~- 472 (927)
-+.-++ ++|.+. +..+-+|+-..-+..+. ...+...++ |.-=-++||-+.+..+|.
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~-----------------~~elDtSnG-vl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIA-----------------LQELDTSNG-VLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccCcce-----------------eEEeccCCc-eEEeeecCCCCEEEEEecC
Confidence 333356 444433 33445565433322110 112223333 443456888888776665
Q ss_pred CceE-EEEccCCc
Q 002405 473 HGLI-LYDIRQKK 484 (927)
Q Consensus 473 dg~i-~wd~~s~~ 484 (927)
||.| .|.+....
T Consensus 285 D~~IRYyEit~d~ 297 (472)
T KOG0303|consen 285 DSSIRYFEITNEP 297 (472)
T ss_pred CcceEEEEecCCC
Confidence 7888 88876543
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.9e-12 Score=133.29 Aligned_cols=192 Identities=16% Similarity=0.129 Sum_probs=131.7
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
-+++|+++|..||+|+.||++|||++.. ...+..... |.+.|.++.|||||+.||+-+.| ..+||++.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~--------~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA--------HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh--------hcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 4799999999999999999999999765 333433444 89999999999999999999999 9999999988
Q ss_pred eeEEEecc-ccccceecceecCCCCCCcccccc-----cc----eeEEEcCCCc-eEEEEEcCCcceE--EEEec-ccee
Q 002405 340 RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS-----GT----SMMQWDEYGY-RLYAIEEGSSERV--LIFSF-GKCC 405 (927)
Q Consensus 340 ~~~~~l~~-~~~~~v~s~~~sp~~~~~~~~l~s-----g~----~~~~W~~~~~-~l~~~~~~~~~~v--~~~~~-~~~~ 405 (927)
..+.+... ........++|+.++....-.+++ +. .+.+|+.... +.......+ ..| +.++. |+.+
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFL 296 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEE
Confidence 66665542 223456778888775321111111 00 3344554311 111111122 234 55555 8999
Q ss_pred eecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
+-|+.||.+-+.+...-.. + ...-..|...|+.+.|+||-+++++-+.+..+ +..+.
T Consensus 297 AlGT~dGsVai~~~~~lq~-~------------------~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQR-L------------------QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEeccCCcEEEEEeceeee-e------------------EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999998877543221 1 11223688899999999999999988877766 66553
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.36 E-value=1.1e-09 Score=124.32 Aligned_cols=228 Identities=25% Similarity=0.364 Sum_probs=169.7
Q ss_pred EEeCCcEEEEeeecCccceeeecccc-ee---cC-CCCeE-EEEE-cCCCc-EEEEEec-CCeEEEEeccCCCcceEEEe
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKID-KE---LG-SGDAV-CASI-APEQQ-ILAVGTR-RGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~-~~---~~-h~~~v-~v~~-sp~~~-~la~g~~-Dg~V~vwd~~~~~~~~~~l~ 296 (927)
+.+++..++.++.++.+.+|+..... .. .+ +...+ .+.+ ++++. .++..+. |+.+++|+..........+.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 35666666666677777778766553 21 23 22234 5555 88887 5555444 99999999974234556666
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcc-cccccc-
Q 002405 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT- 373 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~-~l~sg~- 373 (927)
. |...|.+++|+|++..+++++. |+.+++|++..+.....+.+| ...+..++++|++ . .+++++
T Consensus 153 ~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~~ 219 (466)
T COG2319 153 G--------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDG----GLLIASGSS 219 (466)
T ss_pred c--------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCc----ceEEEEecC
Confidence 6 9999999999999999999985 999999999988888888886 7889999999887 4 444422
Q ss_pred --eeEEEcCCCceEEE-EEcCCcce-EEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccc
Q 002405 374 --SMMQWDEYGYRLYA-IEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (927)
Q Consensus 374 --~~~~W~~~~~~l~~-~~~~~~~~-v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (927)
++.+|+...+..+. ...+|... +..+++ +..+++++.|+.+++|+.......+ ..+
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------------------~~~ 280 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL-------------------RTL 280 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEE-------------------EEE
Confidence 77799877777776 57777666 445666 5677899999999999987554311 111
Q ss_pred ccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 449 ~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
.+|..+|.++.|+|++..+++++.|+.+ +|+..+...
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 5678899999999999999999999888 998887753
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.36 E-value=1.1e-10 Score=121.51 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=69.0
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.+|.+-+ .++|+|++.++++|+-|.++++||+.. +.....+.. |..-|.-++|.|-++++++-+.|...+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~d--------h~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDD--------HEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccc--------cccccceeecchhhhhhhhhccCcccc
Confidence 5788888 999999999999999999999999998 777777776 999999999999999999999999787
Q ss_pred EEEccCCe
Q 002405 333 VWSVSGCR 340 (927)
Q Consensus 333 vW~~~~~~ 340 (927)
+.+....+
T Consensus 191 ~~~~~~~~ 198 (434)
T KOG1009|consen 191 GFSAKLKQ 198 (434)
T ss_pred eeeeeeee
Confidence 77775433
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.35 E-value=3.8e-11 Score=119.37 Aligned_cols=254 Identities=13% Similarity=0.106 Sum_probs=157.5
Q ss_pred CCceEEEEEec-CeEEEEEcc--------CeEEEeecCCceeEEEEEeeChHh---h--hhcccccEEEEcCCccEEEEE
Q 002405 20 SSQQIIYFKVN-NGLLLIASP--------CHIELWSSSQHKVRLGKYKRDSES---V--QREGENLQAVWSPDTKLIAVV 85 (927)
Q Consensus 20 ~~~~iv~fs~d-g~lla~~~~--------~~v~IW~~~~~~~~l~~~~r~~~s---l--~~~G~~~~v~wspDg~~Lav~ 85 (927)
+...-++-+|- .++||++.. ..+.||...++..+ .-..+.+. + +..|.+.+|.|-|++..||.-
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc--cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 45555666665 457888732 36889998644332 01111111 1 346888999999999999877
Q ss_pred ecCcEEEEEEEEecCceeec-CCCCCCCccceeeeEEeecccccccccceEEEeec-cCCeEEEEecCCcEEEEecCCcc
Q 002405 86 TSSLYLHIFKVQITEKSIQI-GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEF 163 (927)
Q Consensus 86 t~dg~l~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~l~v~~~dg~i~~~~w~~~~ 163 (927)
+ +..|.+|+++.+...... ......+ ....+ ..+ ..++ .+...+.++.++++..|+.....
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e-----~~~~f-----tsg------~WspHHdgnqv~tt~d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAE-----MRHSF-----TSG------AWSPHHDGNQVATTSDSTLQFWDLRTMK 204 (370)
T ss_pred c-cCceEEEEcccCcchheeeccccccc-----cccee-----ccc------ccCCCCccceEEEeCCCcEEEEEccchh
Confidence 6 778999999866653221 0000000 00000 011 1222 12345667778888876544221
Q ss_pred ccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCcc
Q 002405 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGL 242 (927)
Q Consensus 164 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~ 242 (927)
.... .-..|...+++++|+ |+-+ +++++.+|+.+
T Consensus 205 -~~~s----------------------------------I~dAHgq~vrdlDfN----------pnkq~~lvt~gDdgyv 239 (370)
T KOG1007|consen 205 -KNNS----------------------------------IEDAHGQRVRDLDFN----------PNKQHILVTCGDDGYV 239 (370)
T ss_pred -hhcc----------------------------------hhhhhcceeeeccCC----------CCceEEEEEcCCCccE
Confidence 1111 013456678888875 4444 67778889999
Q ss_pred ceeeecccce----ecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCc--------------------ceEEEe
Q 002405 243 KLAEFIKIDK----ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESAS--------------------LIRTVS 296 (927)
Q Consensus 243 ~~w~~~~~~~----~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~--------------------~~~~l~ 296 (927)
++||....+. +.+|...| +|.|||- .+++.+|+.|..|.+|....-.. ..+.+.
T Consensus 240 riWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred EEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 9999876432 37899999 9999996 57889999999999998743110 000011
Q ss_pred eecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcc
Q 002405 297 LYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~ 337 (927)
......-..|...|.+++||. |.=.+|+-+.||.+.|=++.
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 001111225999999999987 66688999999998887764
No 182
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=1.6e-10 Score=116.93 Aligned_cols=232 Identities=13% Similarity=0.274 Sum_probs=142.2
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcc-cccEEEEcCCccEEEEEecC-------cEEEEEEE
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFKV 96 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wspDg~~Lav~t~d-------g~l~i~~l 96 (927)
++|+.|..-||++++...+|++++ | +..-.+. .....| .++.+-|. +++||..... +.|.|||=
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P---~ke~~~r--~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-P---FKESASR--QFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-c---hhhhhhh--ccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec
Confidence 889999999999999999999997 5 2211110 011112 11233443 4566654322 35888871
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCC
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~ 176 (927)
. .+ .++. ++.+ ..+|+++...++.|++.+. +.|.+|...........++
T Consensus 83 ~-k~------------~~i~--el~f---------~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e------ 131 (346)
T KOG2111|consen 83 L-KE------------RCII--ELSF---------NSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE------ 131 (346)
T ss_pred c-cC------------cEEE--EEEe---------ccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee------
Confidence 1 00 1111 1111 1256777778888888775 4666776654432222111
Q ss_pred cccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEE-eeecCccceeeeccc-----
Q 002405 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC-SVSKKGLKLAEFIKI----- 250 (927)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~-~~~d~~~~~w~~~~~----- 250 (927)
....+..+.+ ++|..+ ..+++. |...|.+++-++...
T Consensus 132 ---------------------------t~~NPkGlC~--~~~~~~--------k~~LafPg~k~GqvQi~dL~~~~~~~p 174 (346)
T KOG2111|consen 132 ---------------------------TRSNPKGLCS--LCPTSN--------KSLLAFPGFKTGQVQIVDLASTKPNAP 174 (346)
T ss_pred ---------------------------cccCCCceEe--ecCCCC--------ceEEEcCCCccceEEEEEhhhcCcCCc
Confidence 0011111211 222222 222222 122345555544322
Q ss_pred ceecCCCCeE-EEEEcCCCcEEEEEecCCe-EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 251 DKELGSGDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 251 ~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
.....|...+ |++.+-+|.++||+|..|| |||||..+ ++.+..++... ....|.||+||||+.+||++|+.
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~------d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGV------DRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCC------chheEEEEEeCCCccEEEEEcCC
Confidence 2347899999 9999999999999999997 69999998 77777776411 35679999999999999999999
Q ss_pred CcEEEEEccCC
Q 002405 329 RGLTVWSVSGC 339 (927)
Q Consensus 329 g~v~vW~~~~~ 339 (927)
||+-|+.+...
T Consensus 248 gTlHiF~l~~~ 258 (346)
T KOG2111|consen 248 GTLHIFSLRDT 258 (346)
T ss_pred CeEEEEEeecC
Confidence 99999998664
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.8e-11 Score=136.64 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=144.2
Q ss_pred CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecCCCCCCCccce
Q 002405 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (927)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d---g~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (927)
..|.|||.+... ...+. ...+.+.+.+|||||+.||..+.+ ..|.+|++..+.......
T Consensus 184 ~~i~i~d~dg~~--~~~lt------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~---------- 245 (429)
T PRK01742 184 YEVRVADYDGFN--QFIVN------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS---------- 245 (429)
T ss_pred EEEEEECCCCCC--ceEec------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------
Confidence 589999986322 11111 123457789999999999987654 368999986543211100
Q ss_pred eeeEEeecccccccccceEEEeeccCCeEEEEe-cCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccC
Q 002405 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (927)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~-~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 195 (927)
..+.... .++++|++.|+++. .+|...++.|+........
T Consensus 246 -----------~~g~~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------- 286 (429)
T PRK01742 246 -----------FRGHNGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------- 286 (429)
T ss_pred -----------CCCccCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------------
Confidence 0111111 36788888888875 5787777766643221111
Q ss_pred CCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEee-ecCccceeeeccc---ceecCCCCeEEEEEcCCCcEE
Q 002405 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKI---DKELGSGDAVCASIAPEQQIL 271 (927)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~w~~~~~---~~~~~h~~~v~v~~sp~~~~l 271 (927)
+..+...+.+ ..++|||+.++..+ .++..++|+.... ....++.. .+.+|+|+|+.|
T Consensus 287 --------lt~~~~~~~~----------~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 287 --------LTSGAGNNTE----------PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred --------eccCCCCcCC----------EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 0111111222 44688998766555 4567778865321 11123333 457899999999
Q ss_pred EEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc--CCeeEEEecccc
Q 002405 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS 349 (927)
Q Consensus 272 a~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~--~~~~~~~l~~~~ 349 (927)
|+++.++.+ +||+.+ +... .+.. + ....+++|+|||+.|+.++.+++..+|.+. .+....++.+|
T Consensus 348 a~~~~~~i~-~~Dl~~-g~~~-~lt~--------~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~- 414 (429)
T PRK01742 348 VMINGDNVV-KQDLTS-GSTE-VLSS--------T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS- 414 (429)
T ss_pred EEEcCCCEE-EEECCC-CCeE-EecC--------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence 998887655 589876 4432 2222 1 123467899999999999999999888763 45677778766
Q ss_pred ccceecceecCCC
Q 002405 350 LSSISSPIVKPNQ 362 (927)
Q Consensus 350 ~~~v~s~~~sp~~ 362 (927)
...+..++|+|..
T Consensus 415 ~g~~~~p~wsp~~ 427 (429)
T PRK01742 415 DGQVKFPAWSPYL 427 (429)
T ss_pred CCCCCCcccCCCC
Confidence 5667888888753
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=120.89 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=159.6
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcc--cccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG--ENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G--~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
..--+.|-.++++++-...+.|.+|... +...+ -.++.+| .++.+.--|. ..|.+...|+.+.+|++..
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~lq-t~r~~-------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVLQ-TERDL-------PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEee-cCccc-------hhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 3444667888888776678899999994 43222 2222222 3456677776 5788889999999999875
Q ss_pred cCc---------eeec------CCCCCCCcc---------c---eeeeEEeecccc---cccccceEEEeecc----C-C
Q 002405 99 TEK---------SIQI------GGKQPSGLF---------F---IKISLVLNEQLP---FAEKGLSVSNIVSD----N-K 143 (927)
Q Consensus 99 ~~~---------~~~~------~~~~~~~~~---------~---~~~~~~~~~~~~---~~~~~~~v~~i~~~----~-~ 143 (927)
+.- .+.+ .+....++. . .+.--...-.+. -....+.+.|...+ . -
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 321 0000 000000000 0 000000000000 01224455665421 2 2
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+++|-.+|.+..|+...+. ...++. ... ........|..++.+++|.+..+.-
T Consensus 167 lllaGyEsghvv~wd~S~~~-~~~~~~---~~~----------------------kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGD-KIIQLP---QSS----------------------KVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred EEEEeccCCeEEEEEccCCc-eeeccc---ccc----------------------ccccchhhccCcceeeeechhhcCC
Confidence 35666779999886554321 111100 000 0012335678889999997665544
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
+...++.+......++.+-.+- . ..+....| ..+ .+.+-||++.+|+++.||.||||+.++ ..++..++-
T Consensus 221 isgga~dkl~~~Sl~~s~gslq-~-~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky----- 291 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQ-I-RKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY----- 291 (323)
T ss_pred cCCCccccceeeeeccccCccc-c-cceEEecC-CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh-----
Confidence 4445555555544433211110 0 00000122 334 789999999999999999999999998 888888888
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
|++.|++++||||...+|+|+.|+.|.+|++
T Consensus 292 ---Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 ---HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999986
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=8.2e-09 Score=117.80 Aligned_cols=298 Identities=12% Similarity=0.118 Sum_probs=172.4
Q ss_pred cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 254 ~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
.+|....++.+++.|...+..- +..+.+|.+.. .. +.... ......|+-.+++.++||+++++|+|..||.|.+
T Consensus 158 ~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~-~~--~~~~~--~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 158 KEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPK-HT--KHTSS--RDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred hhhcCCccEEEcCCceEEEEEE-eeeEEEEEecc-cc--eeecc--chhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 3454456899999998877754 45678898876 22 21111 1122348888999999999999999999999999
Q ss_pred EEccC--C--eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cc
Q 002405 334 WSVSG--C--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GK 403 (927)
Q Consensus 334 W~~~~--~--~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~ 403 (927)
|.-.+ . ...+.+.+| ...|++++|+++| ..+.||+ -...|..++++. ..+..=.+.| .++++ +.
T Consensus 232 w~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWH-HDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSD 305 (792)
T ss_pred EeccccccccccceEEEec-ccccceeEEecCC----ceEeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCC
Confidence 98766 1 234567778 6789999999999 8999998 566799887652 1122112333 22233 33
Q ss_pred eeeecccCCCeeeeeeeecCCeEEEeecCCCCcce-EEEeecC--cccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK-ILHLNLP--VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 404 ~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~-w~~~~~~--~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
..+....|+. +.+....+..... -..+..+ ..-..-.+-.+.++++|.-+.++-.|..|.+ .||
T Consensus 306 ~~sl~~~DNq------------I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 306 LYSLVLEDNQ------------IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred eEEEEecCce------------EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence 3333333443 3333332221110 1111111 1111223446779999987888889999999 999
Q ss_pred ccCCcEE-ee---CCccceee--e--EEEEE--EeeCCEEEEEEee-c----CCCeEEEEEeeCCCCCcccee-EEEecC
Q 002405 480 IRQKKWR-VF---GDITQEQK--I--QSKGL--LWLGKIIVVCNYI-D----SSNTYELLFYPRYHLDQSSLL-CRKSLL 543 (927)
Q Consensus 480 ~~s~~w~-~f---~~~~~e~~--~--~v~~~--~W~~~~li~~~~~-~----~~~~~~l~l~~~~~l~~~~~~-~~~~~~ 543 (927)
+.+.+-- .+ ....+..+ . .++.. .-++..+.+.-.. + .++...+++|.+..-.....+ .+...|
T Consensus 374 l~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P 453 (792)
T KOG1963|consen 374 LYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP 453 (792)
T ss_pred ccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC
Confidence 9776421 11 11111111 1 12221 1225555543221 1 124667899988622222333 233333
Q ss_pred Ccc-----EEEEccCC-EEEEEEcCCeEEEEEEEEecc
Q 002405 544 AKP-----IVMDVYED-YILVTYRPFDVHIFHVKLFGE 575 (927)
Q Consensus 544 ~~~-----~~~~~~~~-~l~v~~~d~~i~l~~~~~~~~ 575 (927)
... +..++... ..+.++.||.+++|-+.-+.+
T Consensus 454 H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n 491 (792)
T KOG1963|consen 454 HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN 491 (792)
T ss_pred CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence 221 12344444 788888999999998864333
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=2.2e-10 Score=115.92 Aligned_cols=220 Identities=18% Similarity=0.173 Sum_probs=128.1
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEE-EecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav-~t~dg~l~i~~l~~~ 99 (927)
..+...|||+|+++|++.+-.+.|=|.. + .++.++--. -..+.-+.|+.|+..+.. ...++.|.+|++...
T Consensus 10 ~~~~c~fSp~g~yiAs~~~yrlviRd~~-t-lq~~qlf~c------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 10 LNPFCSFSPCGNYIASLSRYRLVIRDSE-T-LQLHQLFLC------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred cCCceeECCCCCeeeeeeeeEEEEeccc-h-hhHHHHHHH------HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 4556889999999999998889888885 2 111111111 234568999999987555 556779999999732
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCccccceeecccCCCCcc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
. |.- ++.+ +...-...+.++|+.+++..+. +-.|.+|+....... .
T Consensus 82 e---------------w~c--kIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~----------- 128 (447)
T KOG4497|consen 82 E---------------WYC--KIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-L----------- 128 (447)
T ss_pred e---------------eEE--Eecc----CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-E-----------
Confidence 1 100 1110 0111122466788877777665 556666655432211 0
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCc--------cceeeeccc
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG--------LKLAEFIKI 250 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~--------~~~w~~~~~ 250 (927)
....+..+.. +++.+||++.+..+.... .+-|.....
T Consensus 129 -------------------------~~~pK~~~kg----------~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~ 173 (447)
T KOG4497|consen 129 -------------------------LPHPKTNVKG----------YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE 173 (447)
T ss_pred -------------------------ecccccCcee----------EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence 0111122222 456889997776654321 112322111
Q ss_pred ceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 251 DKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 251 ~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
......+.+.+.|+|||..||+ ||--- + .+.-.-+ -.-++..++|||.|++||+|+.|+.
T Consensus 174 -f~~dT~DltgieWsPdg~~laV---------wd~~L--e--ykv~aYe------~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 174 -FKLDTIDLTGIEWSPDGNWLAV---------WDNVL--E--YKVYAYE------RGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred -cCCCcccccCceECCCCcEEEE---------ecchh--h--heeeeee------eccceeEEEeccccceEEeeccchh
Confidence 0123344558999999998876 44211 0 0000100 2245889999999999999999999
Q ss_pred EEEEEc
Q 002405 331 LTVWSV 336 (927)
Q Consensus 331 v~vW~~ 336 (927)
+||-+-
T Consensus 234 lrvlnh 239 (447)
T KOG4497|consen 234 LRVLNH 239 (447)
T ss_pred hhhhce
Confidence 987543
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=7e-11 Score=135.57 Aligned_cols=297 Identities=14% Similarity=0.146 Sum_probs=166.1
Q ss_pred cEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec
Q 002405 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (927)
Q Consensus 71 ~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~ 150 (927)
..+.|+|=...++++.....+++||-+.+.....+......+..+.++.+.. ..|...+++++.
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liN----------------e~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELIN----------------EQDDALLLTASS 1131 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeec----------------ccchhheeeecc
Confidence 4689999889999998788899999876554333322222111122221110 123456889999
Q ss_pred CCcEEEEecCCcccc--ceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe
Q 002405 151 DGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (927)
Q Consensus 151 dg~i~~~~w~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~ 228 (927)
||.|++| +.-... ...+ ...|.+. ..++....+ .+.+. +| ---
T Consensus 1132 dGvIRIw--k~y~~~~~~~eL--------VTaw~~L--s~~~~~~r~------------~~~v~--dW---------qQ~ 1176 (1387)
T KOG1517|consen 1132 DGVIRIW--KDYADKWKKPEL--------VTAWSSL--SDQLPGARG------------TGLVV--DW---------QQQ 1176 (1387)
T ss_pred CceEEEe--cccccccCCcee--------EEeeccc--cccCccCCC------------CCeee--eh---------hhh
Confidence 9999985 322211 1110 0011010 111111000 11111 12 123
Q ss_pred CCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEc-CCCcEEEEEecCCeEEEEeccCCCc--ceEEEeeecC
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIA-PEQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDW 300 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~s-p~~~~la~g~~Dg~V~vwd~~~~~~--~~~~l~~~~~ 300 (927)
.|.+++ +++-..+++||..+..+. .+.+..+ +++-+ +.|..+|.|..||.||+||.+.... .+...+.
T Consensus 1177 ~G~Ll~-tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~--- 1252 (1387)
T KOG1517|consen 1177 SGHLLV-TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE--- 1252 (1387)
T ss_pred CCeEEe-cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc---
Confidence 354444 444667999998775543 2222222 33222 3479999999999999999986332 4555565
Q ss_pred CCCCCCCCC--eeEEEECCCCCE-EEEEEcCCcEEEEEccCCeeEEEec--ccc--ccceecceecCCCCCCcccccccc
Q 002405 301 GYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIR--QIS--LSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 301 ~~~~~h~~~--V~~l~~spdg~~-Lasg~~Dg~v~vW~~~~~~~~~~l~--~~~--~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
|+.. |..+.+-+.|-. |++|+.||.|++||+........+. .|. .+..+++..++.
T Consensus 1253 -----h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h------------ 1315 (1387)
T KOG1517|consen 1253 -----HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH------------ 1315 (1387)
T ss_pred -----cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC------------
Confidence 7766 999999997775 9999999999999997642111110 000 001222223322
Q ss_pred eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc-cCC
Q 002405 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQN 452 (927)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~ 452 (927)
...+++|+. +.+++|++......++.+. | .+. ...
T Consensus 1316 ----------------------------apiiAsGs~-q~ikIy~~~G~~l~~~k~n--------------~-~F~~q~~ 1351 (1387)
T KOG1517|consen 1316 ----------------------------APIIASGSA-QLIKIYSLSGEQLNIIKYN--------------P-GFMGQRI 1351 (1387)
T ss_pred ----------------------------CCeeeecCc-ceEEEEecChhhhcccccC--------------c-ccccCcC
Confidence 233344544 5556665432221111110 1 111 123
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 453 ~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
+.+.|++|+|..-.+|+|+.|.++ +|....+
T Consensus 1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 456899999999999999999999 9987554
No 188
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=2.3e-06 Score=105.30 Aligned_cols=354 Identities=14% Similarity=0.168 Sum_probs=172.9
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~ 143 (927)
..+.++++.+-+|...|++++++|.|.++..+.+... ..+ ... +..+..|. +.+||.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~----------~~~-----E~V-----G~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE----------DEI-----EIV-----GSVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC----------cee-----EEE-----EEEcCcEEEEEECCCcC
Confidence 3477899999999999999999999999854321100 000 000 11122343 5577888
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCce----ecccccCCCccEEEEEEccC
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF----VSDHKFPISSAIIWLELCLP 219 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~ 219 (927)
.+++.|.+|.+..++-+-+......+.........--.++ |......--+..+.. .+.+..+ +.....+. ..+
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVG-WGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s-~dd 210 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVG-WGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLS-WDD 210 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeec-cCcccCccCcchhhhhhhhccCCCCC-ccccCccc-cCC
Confidence 8999999998887643322111111110000000000000 111111000000000 0000000 00001111 112
Q ss_pred cceEEEEEeCCcEEEEeee---c---Cccceeeeccccee--cCCCCeE--EEEEcCCCcEEEEEec---CCeEEEEecc
Q 002405 220 MRLLFVLYSNGQLMSCSVS---K---KGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYDLA 286 (927)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~---d---~~~~~w~~~~~~~~--~~h~~~v--~v~~sp~~~~la~g~~---Dg~V~vwd~~ 286 (927)
....+.+=.||+++++.+- . ..+++|+-. +... ....+.. +++|-|.|.+||+... ...|..|.-+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 2333445678888887764 2 346677643 2211 1112222 7899999999999765 3456667643
Q ss_pred CCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee--EEEeccccccceecceecCCCCC
Q 002405 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDC 364 (927)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~--~~~l~~~~~~~v~s~~~sp~~~~ 364 (927)
|-.-..+... . ......|..++|++|+..||+-..| .|.+|......- .+.+. |+...
T Consensus 290 --GLrhgeF~l~---~-~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~-----------~~~~~-- 349 (928)
T PF04762_consen 290 --GLRHGEFTLR---F-DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIR-----------FSSSE-- 349 (928)
T ss_pred --CcEeeeEecC---C-CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEE-----------ccCCC--
Confidence 3111122221 0 0145689999999999999998776 499999866532 12221 11111
Q ss_pred CcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceee-ecc---cC-CCeeeeeeeecCCeEEEee---cCCCCc
Q 002405 365 KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL-NRG---VS-GMTYARQVIYGEDRLLVVQ---SEDTDE 436 (927)
Q Consensus 365 ~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~-s~s---~d-~~~~~w~~~~~~~~~~~~~---~~~~~~ 436 (927)
+.....|+++....+..... .+.+..+.+.-... +.+ .| +.+-+ . .+.++.+.. ..-+|-
T Consensus 350 -------~~~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~vaV---I-DG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 350 -------SVNFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVAV---I-DGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred -------CCCceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEEEE---E-eCCeEEEecccccCCCch
Confidence 01225688765443333322 12333333211111 100 01 11111 1 122222221 111111
Q ss_pred ceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 437 ~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
+.... ..-..+|.+++|++++..+|+-..||.+ +|....
T Consensus 418 Ms~~~-------l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 418 MSSYE-------LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred HhceE-------EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11111 2234689999999999989999999988 887543
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=1.6e-09 Score=120.06 Aligned_cols=237 Identities=12% Similarity=0.144 Sum_probs=135.3
Q ss_pred EEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEe-cCcEEEEEEEEecCceeecCCCCCC
Q 002405 33 LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPS 111 (927)
Q Consensus 33 lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t-~dg~l~i~~l~~~~~~~~~~~~~~~ 111 (927)
|+|...+++|++|+.+ ....+....+ +...+....++++||+++|++++ .++.|.+|+++ +...+...
T Consensus 5 y~~~~~~~~I~~~~~~-~~g~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~----- 73 (330)
T PRK11028 5 YIASPESQQIHVWNLN-HEGALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFA----- 73 (330)
T ss_pred EEEcCCCCCEEEEEEC-CCCceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEe-----
Confidence 3344468899999995 2222222211 12234556899999999998765 47789999986 22111110
Q ss_pred CccceeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCccccceeecccCCCCcccccccccCCCCC
Q 002405 112 GLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGL 190 (927)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 190 (927)
......+ ...-.++.++++.++++.. ++.+.+++.+... .... .+
T Consensus 74 ------------~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g-~~~~---------~~----------- 119 (330)
T PRK11028 74 ------------AESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKDG-IPVA---------PI----------- 119 (330)
T ss_pred ------------eeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCCC-CCCC---------ce-----------
Confidence 0000111 1122356677888888764 6777776654211 0000 00
Q ss_pred ccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEE-EeeecCccceeeeccccee----------cCCCCe
Q 002405 191 ASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE----------LGSGDA 259 (927)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~-~~~~d~~~~~w~~~~~~~~----------~~h~~~ 259 (927)
....... ....++++|||+.++ +...++.+.+|+..+.... .....+
T Consensus 120 ------------~~~~~~~----------~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p 177 (330)
T PRK11028 120 ------------QIIEGLE----------GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP 177 (330)
T ss_pred ------------eeccCCC----------cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence 0000000 112245689998775 4446688999987642111 111223
Q ss_pred EEEEEcCCCcEEEEEec-CCeEEEEeccCC-Ccc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEE
Q 002405 260 VCASIAPEQQILAVGTR-RGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 334 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~-Dg~V~vwd~~~~-~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW 334 (927)
-.++|+|++++++++.. +++|.+|+++.. +.. +.++.. .+....+......+.++|||++|+++.. ++.|.+|
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVF 255 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence 37899999999988876 899999999742 221 222221 1111112223457999999999999865 6899999
Q ss_pred EccC
Q 002405 335 SVSG 338 (927)
Q Consensus 335 ~~~~ 338 (927)
++..
T Consensus 256 ~i~~ 259 (330)
T PRK11028 256 SVSE 259 (330)
T ss_pred EEeC
Confidence 9853
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.8e-11 Score=122.32 Aligned_cols=228 Identities=15% Similarity=0.131 Sum_probs=138.1
Q ss_pred CCcEEEEeeecCccceeeecccce-----ecCCC-CeE-EEEEcCCCcEEEEEe----cCCeEEEEeccCCCcceEEEee
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDK-----ELGSG-DAV-CASIAPEQQILAVGT----RRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~-----~~~h~-~~v-~v~~sp~~~~la~g~----~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
.+..+.+++.||++++||.+.... +.++. .+. |++.+-+++.+|.|+ .|-.|.+||++...++++.+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 355788889999999999876433 24555 334 999998999999997 4678999999874554555543
Q ss_pred ecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCe----eEEEeccccccceecceecCCCCCCccccccc
Q 002405 298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~----~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
.|...|+++.|.| |...|++||-||-|.|+|+.... +..++. + .++|..+.|..++- ++-..+|-
T Consensus 163 -------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~y-krI~clTH 232 (376)
T KOG1188|consen 163 -------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKKY-KRIMCLTH 232 (376)
T ss_pred -------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCCc-ceEEEEEc
Confidence 3999999999999 67899999999999999996542 222222 2 34466666665531 00111111
Q ss_pred c-eeEEEcCCCceEEEEEcCC------------cceE-EEEec--cceeeeccc-CCCeeeeeeeecCCeEEEeecCCCC
Q 002405 373 T-SMMQWDEYGYRLYAIEEGS------------SERV-LIFSF--GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTD 435 (927)
Q Consensus 373 ~-~~~~W~~~~~~l~~~~~~~------------~~~v-~~~~~--~~~~~s~s~-d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (927)
. +-.+|..+.+.....+... -+.+ -...+ ....+.++. .+...++.+.....
T Consensus 233 ~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s----------- 301 (376)
T KOG1188|consen 233 METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS----------- 301 (376)
T ss_pred cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc-----------
Confidence 1 4555665544322221110 0001 11112 111222222 23333332221000
Q ss_pred cceEEEeecCccccc-CCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 436 ELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 436 ~~~w~~~~~~~~~~~-~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
-...+-+..+.+ |..-||++.|...+.++.+||+||.+ +|..
T Consensus 302 ---~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 ---GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ---ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 001112444444 66678999999999999999999999 9975
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.31 E-value=5.8e-10 Score=130.32 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=131.7
Q ss_pred ccccEEEEc-CCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEE
Q 002405 68 GENLQAVWS-PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (927)
Q Consensus 68 G~~~~v~ws-pDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~ 146 (927)
+.+..++-+ |++.++++|+.||+|++|+...-... ... ......+.. .+...........++.++
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~~s--~rS~ltys~------~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------GGS--ARSELTYSP------EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcC------cce--eeeeEEEec------cCCceEEEEeccCCCeEE
Confidence 333455555 45599999999999999998632211 000 000000111 111222234456778999
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
++++||.|+..+.+-....... . ...+.......+.+.+|....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~-------~---------------------~~~ri~n~~~~g~vv~m~a~~-------- 1158 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRV-------A---------------------TQVRIPNLKKDGVVVSMHAFT-------- 1158 (1431)
T ss_pred EEcCCCeEEEEEccccccccce-------e---------------------eeeecccccCCCceEEeeccc--------
Confidence 9999999998877642111110 0 011222334445566664311
Q ss_pred EeCCc-EEEEeeecCccceeeecccce-e-----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 227 YSNGQ-LMSCSVSKKGLKLAEFIKIDK-E-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 227 s~dG~-~~~~~~~d~~~~~w~~~~~~~-~-----~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
..++. .++.+..-+.+..||...... | ..|+-.++++++|-+.++++|+..|.+-+||++- +.++..++..
T Consensus 1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P- 1236 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP- 1236 (1431)
T ss_pred ccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc-
Confidence 12233 444445555566677654321 1 3455555999999999999999999999999986 5556555431
Q ss_pred CCCCCCCCCCeeEEEECC---CCCEEEEEE--cCCcEEEEEccCCeeEEEecc
Q 002405 300 WGYSMDDTGPVSCIAWTP---DNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp---dg~~Lasg~--~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
+..+++.|...| .....++++ ..+.|.+|++.+|.+..++..
T Consensus 1237 ------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1237 ------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ------ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 456777776665 334555444 468999999999876666643
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=2.8e-09 Score=110.14 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=89.9
Q ss_pred CCCCeE-EEEEcCCCcEEEEE--ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 255 GSGDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g--~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
.+...+ .+++|+.+.++|-- ...|.|.|||+.+ -+...++.. |++++.+++|+|||.+||+|++.|+|
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a--------H~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA--------HKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe--------cCCceeEEEECCCCCEEEEeccCceE
Confidence 455556 66777788899853 3468999999987 677778887 99999999999999999999999985
Q ss_pred -EEEEccCCeeEEEeccc-cccceecceecCCCCCCcccccccc---eeEEEcCC
Q 002405 332 -TVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (927)
Q Consensus 332 -~vW~~~~~~~~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (927)
||+++..|+.+..++-+ -...+.+++|+|++ +++...+ ++.++..+
T Consensus 198 IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEec
Confidence 99999999988888743 13467899999998 6655433 66665544
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=4.3e-10 Score=129.23 Aligned_cols=275 Identities=16% Similarity=0.187 Sum_probs=169.3
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcC--CccEEEEEecCcEEEEEEEE
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQ 97 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsp--Dg~~Lav~t~dg~l~i~~l~ 97 (927)
..+++.|.|=...++++. ...|+|||.. .+..+..+.-... -.-.+.++.+-- |..++.++++||.||||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~---~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAF---PDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCC---CCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 467788999988888886 5589999996 4444554433221 123345565543 55689999999999999742
Q ss_pred ecC-ceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCC
Q 002405 98 ITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (927)
Q Consensus 98 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~ 176 (927)
... .+.. +-..-..++.........+-+.........++++++-..|++ ||.+.+...
T Consensus 1142 ~~~~~~~e----------LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI--WDa~~E~~~--------- 1200 (1387)
T KOG1517|consen 1142 ADKWKKPE----------LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI--WDAHKEQVV--------- 1200 (1387)
T ss_pred ccccCCce----------eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE--EecccceeE---------
Confidence 221 1000 000001122222222233345555555677787776667776 454433221
Q ss_pred cccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce----
Q 002405 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---- 252 (927)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---- 252 (927)
..+|. +....++.+.-+ ...|.+++.|..||.++++|...+..
T Consensus 1201 ---~diP~---------------------~s~t~vTaLS~~---------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1201 ---ADIPY---------------------GSSTLVTALSAD---------LVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred ---eeccc---------------------CCCccceeeccc---------ccCCceEEEeecCCceEEeecccCCccccc
Confidence 11121 123334444311 23478888899999999888764322
Q ss_pred --ecCCCCe--E-EEEEcCCCcE-EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCC--C-CeeEEEECCCCCEEE
Q 002405 253 --ELGSGDA--V-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT--G-PVSCIAWTPDNSAFA 323 (927)
Q Consensus 253 --~~~h~~~--v-~v~~sp~~~~-la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~--~-~V~~l~~spdg~~La 323 (927)
+..|++. | .+.+.++|-- |++|+.||.|++||++. ......+... .|. | .++++..+++...+|
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~-~~~e~~~~iv------~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM-SSKETFLTIV------AHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc-Ccccccceee------eccccCccceeeeeccCCCeee
Confidence 2567776 6 9999997654 99999999999999987 2222222210 033 4 599999999999999
Q ss_pred EEEcCCcEEEEEccCCeeEEEeccc------cccceecceecCCC
Q 002405 324 VGWKSRGLTVWSVSGCRLMSTIRQI------SLSSISSPIVKPNQ 362 (927)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~~~------~~~~v~s~~~sp~~ 362 (927)
+|+. +.++||++.|.++ ..++.+ ....+++++|+|..
T Consensus 1321 sGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1321 SGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchh
Confidence 9999 9999999987543 333221 13446677777764
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.1e-10 Score=118.05 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=167.1
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC-----CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-----~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.+|.++| .+.||.++++||+|+.|..++||+++.. .+++.. ++ ..|..-|.|++|....+.|.+|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~------~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-ME------HPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-cc------CccccceEEEEEccCCeeEecCCC
Confidence 6899999 9999999999999999999999999741 112221 11 127789999999999999999999
Q ss_pred CCcEEEEEccCCeeEEEeccc-cccceecceecCCCCCCcccccccc---eeEEEcCCCc----eEEEEEcCCcceE--E
Q 002405 328 SRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV--L 397 (927)
Q Consensus 328 Dg~v~vW~~~~~~~~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v--~ 397 (927)
+++|..-|+.+.+.+..+... ..+.|..+..+|.. ..+++.+ .+.+|+.... .++.... ..... .
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~ 200 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNFYTA 200 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeecC-CCccceee
Confidence 999999999998777666532 13468888888886 6665544 7888987543 3333322 12223 4
Q ss_pred EEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCce
Q 002405 398 IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (927)
Q Consensus 398 ~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~ 475 (927)
.|.+ ...+++.+..+.+.+||.......++-+.+.- .+|+ .+-.-.++.|+|+|..+.+--+..-
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~---------~L~~----~~~~~M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK---------GLPQ----ENTEWMGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccc---------cCcc----cchhhhheeeCCCCCeehhhhccCC
Confidence 4555 55677888888888999876554332222110 0111 1112256889999998876644444
Q ss_pred E-EEEccCCcEEeeCCcc-ceeeeE---EEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 476 I-LYDIRQKKWRVFGDIT-QEQKIQ---SKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 476 i-~wd~~s~~w~~f~~~~-~e~~~~---v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
. +||+.+.+...|.... +..-+. +..+++.+++-|+.+ +..+.|.+|..
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tG----SD~~~i~~Wkl 321 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATG----SDHWGIHIWKL 321 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeecc----CcccceEEEec
Confidence 4 9999999988776542 323233 337888888876642 35577888855
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=8.3e-11 Score=119.89 Aligned_cols=186 Identities=15% Similarity=0.212 Sum_probs=135.1
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
..+|++..+|+|++||..+ ++.+..+++ +.+.++.++|.. .+..+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~--------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKG--------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecC--------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 6799999999999999998 888889998 888899999987 46789999999999999997765444333
Q ss_pred --cccccceecceecCCCCCCcccccccc-------eeEEEcCCCceE-EEE-EcCCcceEEEEec----cceeeecccC
Q 002405 347 --QISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YAI-EEGSSERVLIFSF----GKCCLNRGVS 411 (927)
Q Consensus 347 --~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l-~~~-~~~~~~~v~~~~~----~~~~~s~s~d 411 (927)
++...+..+++.. |+...++.|. .+.+||.+..+. +.. ...|.+.|.++.| ...++|||.|
T Consensus 112 ~~~~~~~~f~~ld~n----ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLN----CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcceEeecc----CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 3311234444332 3445665554 788999876543 333 3578888866665 6689999999
Q ss_pred CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC-CEEEEEeCCceE-EEEccCCc
Q 002405 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG-~~la~ag~dg~i-~wd~~s~~ 484 (927)
|.+.++|+...++. ........|...|-.+.|..+| +.|.+-+..+.. +|+++.+.
T Consensus 188 GLvnlfD~~~d~Ee-----------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE-----------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEeeecCCCcch-----------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99999998754331 0122344666779999998887 346666666666 99998776
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.25 E-value=8.4e-12 Score=139.61 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=161.1
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+.||..+| |+.|...|.++.+|+.|..|+||.+++ +.++....+ |.+.++.++.+.+..++|+++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG--------hs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG--------HSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC--------CccccchhccchhhhhhhhcccCceE
Confidence 47999999 999999999999999999999999887 888888888 99999999999999999999999999
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCccccccc--ceeEEEcCCCceEEEEEc----CCcceEEEEec---c
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE----GSSERVLIFSF---G 402 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~----~~~~~v~~~~~---~ 402 (927)
+||.+..+.++..|+|| ++.|++++|+|-. .++ .++.+|+..-.-+..... ...+.+..+-+ +
T Consensus 257 rvWrl~~~~pvsvLrgh-tgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEecCCCchHHHHhcc-ccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 99999999999999999 8999999999874 222 289999987211111100 01122333333 6
Q ss_pred ceeeecccCCCeeeeeeeec---CCeEEEee-cCCCCc-----------ceEEE--eecCcccccCCCceEEEEEccCCC
Q 002405 403 KCCLNRGVSGMTYARQVIYG---EDRLLVVQ-SEDTDE-----------LKILH--LNLPVSYISQNWPVQHVAASKDGM 465 (927)
Q Consensus 403 ~~~~s~s~d~~~~~w~~~~~---~~~~~~~~-~~~~~~-----------~~w~~--~~~~~~~~~~~~~I~~va~spdG~ 465 (927)
....|++.|+.-..|.+.+. ...+.++. ..+.+. ..|.. .++.....+|..++..+.++|-..
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 67789999988877765432 22333332 323221 12442 333556678899999999999665
Q ss_pred EEE-EEeCCceE-EEEccCC
Q 002405 466 FLA-VAGLHGLI-LYDIRQK 483 (927)
Q Consensus 466 ~la-~ag~dg~i-~wd~~s~ 483 (927)
.++ +||.||.. +||+..|
T Consensus 409 ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred HhhhhccCCCceEeeecccC
Confidence 555 89999999 9998655
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=3.7e-11 Score=128.86 Aligned_cols=145 Identities=18% Similarity=0.290 Sum_probs=106.9
Q ss_pred CccEEEEEEccCc-ceEEEEEeCCcEEEEe-----e-ec--------C---ccceeeecc---c-ceecCCCCeE-EEEE
Q 002405 208 SSAIIWLELCLPM-RLLFVLYSNGQLMSCS-----V-SK--------K---GLKLAEFIK---I-DKELGSGDAV-CASI 264 (927)
Q Consensus 208 ~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~-----~-~d--------~---~~~~w~~~~---~-~~~~~h~~~v-~v~~ 264 (927)
+..++++.|-+.. ..+++...+|..++.. . .. + .+-.|.... + .+|.--.+++ ..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4677888886655 4666777777766541 1 10 0 011111100 0 1121123466 8899
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE
Q 002405 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 265 sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
+|||++||+-+.||.+||||.++ .+++-.++. --|...|++|||||+++++|++|.-|.||++..++.++.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS--------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS--------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cCCCceEEEEecCceEEEeeccH-HHHHHHHHh--------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 99999999999999999999987 555555544 567899999999999999999999999999999999998
Q ss_pred eccccccceecceecCCC
Q 002405 345 IRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 345 l~~~~~~~v~s~~~sp~~ 362 (927)
=++| .++|+.++|.|..
T Consensus 370 GqGH-kSWVs~VaFDpyt 386 (636)
T KOG2394|consen 370 GQGH-KSWVSVVAFDPYT 386 (636)
T ss_pred cccc-ccceeeEeecccc
Confidence 8888 9999999999864
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.4e-10 Score=130.89 Aligned_cols=205 Identities=13% Similarity=0.144 Sum_probs=130.4
Q ss_pred EEEeCCcEEEEeeec---Cccceeeecccce--ecCCCCeE-EEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEee
Q 002405 225 VLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d---~~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
.++|||+.++..+.+ ..+.+|+..+++. +....... ..+|+|||+.||.++ .+|.+.||.++..+.....+..
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc
Confidence 457888877776543 3577888765532 22112223 789999999988865 6888777755432344455554
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEccCC-eeEEEeccccccceecceecCCCCCCccccccc--c
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--T 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg--~ 373 (927)
+.+.+.+.+|||||+.|+.++ .+|...||++... .....+ .+ .. ..+.++|++ ..++.. .
T Consensus 290 --------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG----~~ia~~~~~ 353 (429)
T PRK01742 290 --------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADG----KTLVMINGD 353 (429)
T ss_pred --------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCC----CEEEEEcCC
Confidence 667788999999999877655 5688999987421 122222 22 22 457789998 555333 2
Q ss_pred eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC
Q 002405 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (927)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (927)
.+..|+..+++.......+...-..+++ ++.++.++.++...+|.+...+.+ ....+.+|.
T Consensus 354 ~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~~~~ 415 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLPGSD 415 (429)
T ss_pred CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEccCCC
Confidence 5667888777654333332222245677 888888888888888876532221 134445667
Q ss_pred CceEEEEEccC
Q 002405 453 WPVQHVAASKD 463 (927)
Q Consensus 453 ~~I~~va~spd 463 (927)
+.+...+|||-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77888888874
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.24 E-value=4.4e-09 Score=116.52 Aligned_cols=268 Identities=15% Similarity=0.169 Sum_probs=151.4
Q ss_pred EEEeeecCccceeeecc-cc--ee--cCC-CCeEEEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEeeecCCCCCC
Q 002405 233 MSCSVSKKGLKLAEFIK-ID--KE--LGS-GDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (927)
Q Consensus 233 ~~~~~~d~~~~~w~~~~-~~--~~--~~h-~~~v~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~ 305 (927)
+++...++++.+|+..+ ++ .. ..+ ..+..++++|++++|++++ .++.|.+|+++..+. +.......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeec------
Confidence 44445566677777642 11 11 122 2334899999999887664 578999999974233 22222111
Q ss_pred CCCCeeEEEECCCCCEEEEEEc-CCcEEEEEccC-Ce---eEEEeccccccceecceecCCCCCCccccc-cc---ceeE
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG-CR---LMSTIRQISLSSISSPIVKPNQDCKYEPLM-SG---TSMM 376 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW~~~~-~~---~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~-sg---~~~~ 376 (927)
..+....++|+|||++|++++. ++.+.+|++.. +. ....+.+ ......++++|++ +.+. +. .++.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g----~~l~v~~~~~~~v~ 151 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN----RTLWVPCLKEDRIR 151 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC----CEEEEeeCCCCEEE
Confidence 2334678999999998888764 78999999963 22 2222222 2335567788987 5443 22 2788
Q ss_pred EEcCCCceEEE--------EEcCCcceEEEEec-cceeeeccc-CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCc
Q 002405 377 QWDEYGYRLYA--------IEEGSSERVLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (927)
Q Consensus 377 ~W~~~~~~l~~--------~~~~~~~~v~~~~~-~~~~~s~s~-d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (927)
+|+.++...+. ...+...+-..+++ ++.+..++. ++++.+|++......+..... ....|.
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~---------~~~~p~ 222 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT---------LDMMPA 222 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE---------EecCCC
Confidence 99886532221 11121112256666 777766554 888999998643222111110 001233
Q ss_pred ccccCCCceEEEEEccCCCEEEEEeC-CceE-EEEccC--CcEEeeCCccceeeeEEEEEEe--eCCEEEEEEeecCCCe
Q 002405 447 SYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNT 520 (927)
Q Consensus 447 ~~~~~~~~I~~va~spdG~~la~ag~-dg~i-~wd~~s--~~w~~f~~~~~e~~~~v~~~~W--~~~~li~~~~~~~~~~ 520 (927)
...+..++ ..+.++|||++++++.+ ++.+ +|++.. +.++..+...-. ....++.+ .+..+++++. ..
T Consensus 223 ~~~~~~~~-~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~----~~ 295 (330)
T PRK11028 223 DFSDTRWA-ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQ----KS 295 (330)
T ss_pred cCCCCccc-eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEc----cC
Confidence 22222233 46889999999999965 5777 999854 334333221111 01223444 4677877643 23
Q ss_pred EEEEEeeCC
Q 002405 521 YELLFYPRY 529 (927)
Q Consensus 521 ~~l~l~~~~ 529 (927)
..+.+|..+
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 567787653
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.21 E-value=1.5e-10 Score=123.76 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=116.7
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
...++.++.||.+.+-+-. ++..+.... |.+.|.|-.|+|||.-|.++++||.|++|+-.| .+-.++.+
T Consensus 75 ~d~~~i~s~DGkf~il~k~--~rVE~sv~A--------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS--ARVERSISA--------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQ 143 (737)
T ss_pred cceEEEEcCCceEEEeccc--chhhhhhhh--------hhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhh
Confidence 3578899999999887643 444455556 999999999999999999999999999999765 45555555
Q ss_pred ccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCC
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
. ..+|.+++|.|+.. .-....|..+.+=......-+...++|++-|+.+++ .+.++||+.|-.-++||.. |..
T Consensus 144 ~-~~~v~c~~W~p~S~--~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~ 219 (737)
T KOG1524|consen 144 N-EESIRCARWAPNSN--SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GAN 219 (737)
T ss_pred c-CceeEEEEECCCCC--ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccc
Confidence 5 46799999999872 111122222222222222223344678988888887 6789999999999999942 322
Q ss_pred eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe
Q 002405 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 471 (927)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag 471 (927)
...-..|..||++++|+|| +..++++
T Consensus 220 --------------------Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 220 --------------------LFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred --------------------cccCChhccceeeeeeccc-cceeeee
Confidence 2233356677777777777 5555555
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.6e-09 Score=103.08 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=146.0
Q ss_pred EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 137 ~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
++++.++.+++|..+|.|.+.+...-..+.. ...+.........|++++.++.|
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------------------------~~~gk~~iv~eqahdgpiy~~~f 70 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------------------------EPPGKLKIVPEQAHDGPIYYLAF 70 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhcccc--------------------------CCCCCcceeeccccCCCeeeeee
Confidence 5677788999999999998887653221110 00111222333567888888876
Q ss_pred ccCcceEEEEEeCCcEEEEeee-----cCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC
Q 002405 217 CLPMRLLFVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~-----d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
.... +....||.+...--. .++-++|....+... .-.-..+ ++...|+..-+.+++.|+.+.-||+++ |
T Consensus 71 ~d~~---Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G 146 (325)
T KOG0649|consen 71 HDDF---LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-G 146 (325)
T ss_pred ehhh---eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-C
Confidence 4211 111223333322111 111223332222111 0111234 778888877777777999999999998 8
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccc---------cceecceecC
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL---------SSISSPIVKP 360 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~---------~~v~s~~~sp 360 (927)
+..+++++ |++.|.++.-......+.+|++||++||||..+++++..+.-... ..+.+++.+.
T Consensus 147 ~i~r~~rG--------HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e 218 (325)
T KOG0649|consen 147 RIQREYRG--------HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE 218 (325)
T ss_pred EEEEEEcC--------CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC
Confidence 89999999 999999999866566788999999999999999998888764211 1222322211
Q ss_pred CCCCCcccccccc--eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeee
Q 002405 361 NQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (927)
Q Consensus 361 ~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~ 419 (927)
.-++.|. ..-+|.....+...++.- ..++....| .+.+++++..+.+..|.+
T Consensus 219 ------dWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 219 ------DWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ------ceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeee
Confidence 3333333 778898877666555432 234444555 566777776666666654
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.21 E-value=8e-10 Score=125.93 Aligned_cols=265 Identities=14% Similarity=0.129 Sum_probs=162.3
Q ss_pred CCCCceEEEEEecCe-EEEEE-ccCeEEEeecCCceeEE-EEEeeChHhhhhcccccEEEEcCCccE--EEEEecCcEEE
Q 002405 18 CPSSQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRL-GKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLH 92 (927)
Q Consensus 18 ~~~~~~iv~fs~dg~-lla~~-~~~~v~IW~~~~~~~~l-~~~~r~~~sl~~~G~~~~v~wspDg~~--Lav~t~dg~l~ 92 (927)
+++....+.|+|... ++|.+ .++.|.+||.++++..+ ...... ...+..+++.+.|-.+-.. ++++++||.|.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~--~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL--EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--cccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 345678889999854 55555 38899999997554422 111111 1123467789999776555 99999999999
Q ss_pred EEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe-eccCCeEEEEecCCcEEEEecCCccccceeecc
Q 002405 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 93 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~ 171 (927)
.|+++--...... ...... ...+...-+...+....| ..+...+++||..|.|....+.+.......
T Consensus 319 ~W~~~~l~~P~e~-------~~~~~~--~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~--- 386 (555)
T KOG1587|consen 319 SWDTDMLSLPVEG-------LLLESK--KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV--- 386 (555)
T ss_pred eeeccccccchhh-------cccccc--cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc---
Confidence 9977532211000 000000 000000001111122223 234578999999999998666544322100
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeec-cc
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KI 250 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~-~~ 250 (927)
. +.. -.....|.+.|..+.++|.... ++..+.|-++++|... ..
T Consensus 387 --------~---~~~--------------~~~~~~h~g~v~~v~~nPF~~k----------~fls~gDW~vriWs~~~~~ 431 (555)
T KOG1587|consen 387 --------S---YKG--------------HSTFITHIGPVYAVSRNPFYPK----------NFLSVGDWTVRIWSEDVIA 431 (555)
T ss_pred --------c---ccc--------------cccccccCcceEeeecCCCccc----------eeeeeccceeEeccccCCC
Confidence 0 000 0122356778888888765532 2333347778888754 22
Q ss_pred cee---cCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEE
Q 002405 251 DKE---LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (927)
Q Consensus 251 ~~~---~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (927)
..+ ..+.+.+ +++|||. -..+|++..||.+.+||+... .+++.+.+. +....+.+.|+++|+.||+
T Consensus 432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--------~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--------CSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--------cccccceeecCCCCcEEEE
Confidence 111 4566767 9999995 568999999999999999751 233334433 4566788999999999999
Q ss_pred EEcCCcEEEEEccCC
Q 002405 325 GWKSRGLTVWSVSGC 339 (927)
Q Consensus 325 g~~Dg~v~vW~~~~~ 339 (927)
|...|++.+|++...
T Consensus 504 Gd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 504 GDANGTTHILKLSES 518 (555)
T ss_pred ecCCCcEEEEEcCch
Confidence 999999999999543
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.19 E-value=8.8e-10 Score=118.45 Aligned_cols=266 Identities=12% Similarity=0.150 Sum_probs=158.1
Q ss_pred EEEEec--CeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccc-cEEEE-----cCCccEEEEEecCcEEEEEEE
Q 002405 25 IYFKVN--NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVW-----SPDTKLIAVVTSSLYLHIFKV 96 (927)
Q Consensus 25 v~fs~d--g~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~-~~v~w-----spDg~~Lav~t~dg~l~i~~l 96 (927)
+.+.++ |..|+-.-.+.+++|+.+ ....+ .+..+...=.|.+ .+-.| .|+|--+.++-+-|.+.+++.
T Consensus 127 ~~~~~~~~gd~lcFnvg~~lyv~~~~-g~~~~---~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNVGRELYVYSYR-GAADL---SKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeccccCCCCEEEEecCCeEEEEEcc-Ccchh---ccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 444444 668877777789999986 22221 1211111111221 23344 566777888888888888877
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEEEee---ccCCeEEEEecCCcEEEEecCCccccceeecccC
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV---SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~ 173 (927)
....-...+.... .....+++|+. .+...++++-.+|.++.++- +....
T Consensus 203 ~~~~~sklfne~r-------------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~--~~~~~------- 254 (636)
T KOG2394|consen 203 INFEVSKLFNEER-------------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK--EIVCG------- 254 (636)
T ss_pred hhhHHHHhhhhcc-------------------cccccceEEEEEEeCCCceEEEEEecCceEEeec--ccccc-------
Confidence 5311111111000 01113455553 23455677777888877643 11111
Q ss_pred CCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee
Q 002405 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE 253 (927)
Q Consensus 174 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~ 253 (927)
...-.+.++....+++...... .....++....+......-.+|+|||+++++-+.|+.+++++..+.+.+
T Consensus 255 --~t~p~~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 255 --ATAPSYQALKDGDQFAILTSKS-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred --CCCCcccccCCCCeeEEeeeec-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence 1111122222222221111000 0111445555554444444567899999999999999999998765443
Q ss_pred ---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC------------
Q 002405 254 ---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP------------ 317 (927)
Q Consensus 254 ---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp------------ 317 (927)
..--+.. |++|||||++||+|++|--|.||.+.. .+.+..-++ |+..|+.|+|.|
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqG--------HkSWVs~VaFDpytt~~ee~~~~~ 396 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQG--------HKSWVSVVAFDPYTTSTEEWNNFS 396 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceEEEeccc--------cccceeeEeecccccccccccccc
Confidence 2223455 999999999999999999999999987 666666666 999999999873
Q ss_pred -----------------------C-------------CCEEEEEEcCCcEEEEEccCCe
Q 002405 318 -----------------------D-------------NSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 318 -----------------------d-------------g~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
+ -+.+.+.+.|..+.+||+....
T Consensus 397 ~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 397 GMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 1 2467888889999999986543
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=4e-09 Score=109.01 Aligned_cols=232 Identities=14% Similarity=0.224 Sum_probs=148.8
Q ss_pred eEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcc-cccEEEEcCCccEEEEEecC--cEEEEEEEEec
Q 002405 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS--LYLHIFKVQIT 99 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wspDg~~Lav~t~d--g~l~i~~l~~~ 99 (927)
....|+.|..+|++++.+.-++++.. +-.+. .+....| .+.-.-|| +..+|+.+.+ ..+++++.+..
T Consensus 9 ~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~-------~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKC-------FSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eeeeeccceeEEEccCCCceeEEecC-chHHh-------hcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 33568899999999999999999986 43321 1111122 23456676 4566666544 34777777532
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
..- -.+ .+ ..+|.++..+.++|++...+. |++++......-.. |
T Consensus 79 ~~I-------------Ce~--~f---------pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-----------I 122 (391)
T KOG2110|consen 79 TTI-------------CEI--FF---------PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-----------I 122 (391)
T ss_pred ceE-------------EEE--ec---------CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------h
Confidence 210 000 00 014566777788899888766 88877665432111 0
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEee--ecCccceeeecccce---ec
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDK---EL 254 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~--~d~~~~~w~~~~~~~---~~ 254 (927)
. .+.++...+..+.. ++++.+++.-+ ..|.+.+||..+.+. ..
T Consensus 123 ~----------------------t~~~n~~gl~AlS~----------n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~ 170 (391)
T KOG2110|consen 123 E----------------------TTPPNPKGLCALSP----------NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN 170 (391)
T ss_pred h----------------------ccCCCccceEeecc----------CCCCceEEecCCCCCceEEEEEcccceeeeEEE
Confidence 0 01112222322222 22223333322 256788888776543 36
Q ss_pred CCCCeE-EEEEcCCCcEEEEEecCCe-EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 255 GSGDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.|.+.+ |++|||+|.+|||||+-|+ ||||.+.+ ++.+..|+..- -.-.|.+++|+||+++|++.+..++|-
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~------~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGT------YPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCc------eeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 899999 9999999999999999997 59999988 87777776511 124578999999999999999999999
Q ss_pred EEEccCC
Q 002405 333 VWSVSGC 339 (927)
Q Consensus 333 vW~~~~~ 339 (927)
|+.+...
T Consensus 244 iFKL~~~ 250 (391)
T KOG2110|consen 244 IFKLEKV 250 (391)
T ss_pred EEEeccc
Confidence 9998653
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.4e-09 Score=109.37 Aligned_cols=248 Identities=12% Similarity=0.098 Sum_probs=150.3
Q ss_pred eCCcEEEEeeecCccceeeeccccee--cCCC---CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKE--LGSG---DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~---~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
...+.+++|..++++..-|..+.+.+ ..|. +.| .+..+|....+|+.+.+|.|.+||......+...+-..
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A--- 191 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA--- 191 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec---
Confidence 33444445555555555554444333 2333 377 89999999999999999999999998632232222111
Q ss_pred CCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCe-eE------EEeccccccceecceecCCCCCCccccccc-
Q 002405 302 YSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LM------STIRQISLSSISSPIVKPNQDCKYEPLMSG- 372 (927)
Q Consensus 302 ~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~-~~------~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg- 372 (927)
.......++.|.| ...+|++++..+++-|||..... .+ ..|... ...-.++.|+|++ ..+++-
T Consensus 192 ---N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G----~Q~msiR 263 (609)
T KOG4227|consen 192 ---NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSG----NQFMSIR 263 (609)
T ss_pred ---CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-chhhhheeeCCCC----Ceehhhh
Confidence 0234567889999 46788999999999999985421 11 111111 1123456788887 333321
Q ss_pred --ceeEEEcCCCceEEEEEcCCcc-------eEEEEec--cceeeecccCCCeeeeeeeecCCeEEEe-ecCCCCcceE-
Q 002405 373 --TSMMQWDEYGYRLYAIEEGSSE-------RVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELKI- 439 (927)
Q Consensus 373 --~~~~~W~~~~~~l~~~~~~~~~-------~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~-~~~~~~~~~w- 439 (927)
-.-..++.-+.++...-..|.. .+....| -..++||+.+-.+++|.+-...+.--+. -|.+.....-
T Consensus 264 R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 1344566666666555444432 2344445 3467899999899999876543321110 0111111100
Q ss_pred -EEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002405 440 -LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (927)
Q Consensus 440 -~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~ 486 (927)
-...-...+.||...+.+|.|+|...+|++.|-...+ +|+-....|.
T Consensus 344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~ 392 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWS 392 (609)
T ss_pred heecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCcc
Confidence 0111134567999999999999999999999999988 9987665564
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=4.2e-10 Score=120.83 Aligned_cols=232 Identities=21% Similarity=0.273 Sum_probs=148.1
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (927)
|+|-|+|++|+.||.+||+|++|-.+.|||.+..++.+.+...|...|-++.|-|.. +.+.++||. .+++++...
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEeccc
Confidence 999999999999999999999999999999999999999887669999999998875 456777776 788888763
Q ss_pred c----------eEEEEEcCCcceEEEEec---c-ceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcc-
Q 002405 383 Y----------RLYAIEEGSSERVLIFSF---G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS- 447 (927)
Q Consensus 383 ~----------~l~~~~~~~~~~v~~~~~---~-~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~- 447 (927)
. ........|.++|..+.. + ..+.+++.||+++.+|+...... .+. ..+|..
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c-------~p~------~~~~~~l 193 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC-------NPD------EDCPSIL 193 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC-------Ccc------ccccHHH
Confidence 1 112222356666633333 3 67889999999999998742210 000 001111
Q ss_pred --cccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEE
Q 002405 448 --YISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYEL 523 (927)
Q Consensus 448 --~~~~~~~I~~va~spd-G~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l 523 (927)
+...--...++.+||. -.+||+||.|-++ +||.+... +.|..... +. .| - .-...-+
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~l-ks~~s~~~---~~------------~~-p--p~~~~cv 254 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVL-KSFRSDGT---MN------------TC-P--PKDCRCV 254 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhc-cCCCCCcc---cc------------CC-C--Ccccchh
Confidence 1111124678999996 5689999999999 99963211 12211000 00 00 0 0001124
Q ss_pred EEeeCCCCCccc-eeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 524 LFYPRYHLDQSS-LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 524 ~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
++|...++-+.+ .+..+..--+.+.++|+|.-|+|...-..|.+|++.
T Consensus 255 ~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 255 RYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred heecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 455554331111 111121123467889999999887776777787765
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=7e-09 Score=121.51 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=154.4
Q ss_pred ccCC-ceeeeCCCCC--CCCCceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhh-hcccccEEEEcCC
Q 002405 4 AYGW-PQVIPLEQGL--CPSSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPD 78 (927)
Q Consensus 4 ~~g~-p~~~~~~~~~--~~~~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wspD 78 (927)
+.|| ||.+-+++.. .+...++..-++++.+|++++ |++|+||+.++- ..-+...|+..... +.+.+.++..-+.
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~-~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL-EGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhh-hcCcceeeeeEEEeccCCceEEEEeccC
Confidence 3464 5544343332 223456666677789999995 889999999632 22212333333222 3456678888999
Q ss_pred ccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe-e---ccCC-eEEEEecCCc
Q 002405 79 TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-V---SDNK-HMLLGLSDGS 153 (927)
Q Consensus 79 g~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~---~~~~-~l~v~~~dg~ 153 (927)
|..+|+++.||.+++.+++..+........ .++.-....+.+..+ + .... .++.++..+.
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~---------------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQ---------------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeee---------------eecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 999999999999999999752211110000 000000111122221 1 1122 5777888888
Q ss_pred EEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEE
Q 002405 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (927)
Q Consensus 154 i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~ 233 (927)
+.. ||........ +.......+.|+++. ++|-|..+
T Consensus 1175 iv~--~D~r~~~~~w--------------------------------~lk~~~~hG~vTSi~----------idp~~~Wl 1210 (1431)
T KOG1240|consen 1175 IVS--WDTRMRHDAW--------------------------------RLKNQLRHGLVTSIV----------IDPWCNWL 1210 (1431)
T ss_pred eEE--ecchhhhhHH--------------------------------hhhcCccccceeEEE----------ecCCceEE
Confidence 765 5533221110 011123345566654 57778888
Q ss_pred EEeeecCccceeeeccccee----cCCCCeE-EEEEcC---CCcEEEEEe--cCCeEEEEeccCCCcceEEEeeecCC--
Q 002405 234 SCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAP---EQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWG-- 301 (927)
Q Consensus 234 ~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp---~~~~la~g~--~Dg~V~vwd~~~~~~~~~~l~~~~~~-- 301 (927)
+.|...|.+.+||..-.... -++...+ .+..+| +....++++ ..+.|.+|++.+ |.+..++...+..
T Consensus 1211 viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAPI 1289 (1431)
T ss_pred EEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCcc
Confidence 88888888888998643222 1222333 454444 345555444 578899999998 6555555443110
Q ss_pred -----CCC----CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 302 -----YSM----DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 302 -----~~~----~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
++. .+.-......+.--+..+.+|+.|..|+.||....+
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 010 122222333443345688899999999999996653
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.10 E-value=2.6e-09 Score=105.39 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=105.9
Q ss_pred EEEEeeecCccceeeeccccee-------------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC-Ccce-E-E
Q 002405 232 LMSCSVSKKGLKLAEFIKIDKE-------------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLI-R-T 294 (927)
Q Consensus 232 ~~~~~~~d~~~~~w~~~~~~~~-------------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-~~~~-~-~ 294 (927)
+++.|..++.+.+||...+.+. ..|..+| ++.+.+....=++|+.+..+..|+++.. +.+. + .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 4556777888888988764221 4588888 9999988777788999999999999753 2211 1 1
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (927)
... ..-.|..+...||++.+|+++.|+.+|||+..+...+..|+.| ...|++++|+|+. +.++.++
T Consensus 247 ~~l--------knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfspd~----~lmAaask 313 (323)
T KOG0322|consen 247 ITL--------KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSPDC----ELMAAASK 313 (323)
T ss_pred EEe--------cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCCCC----chhhhccC
Confidence 222 2345888999999999999999999999999999999999998 7999999999996 6777666
Q ss_pred --eeEEEc
Q 002405 374 --SMMQWD 379 (927)
Q Consensus 374 --~~~~W~ 379 (927)
++-+|.
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 666775
No 209
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.09 E-value=2.3e-09 Score=116.79 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=95.9
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecc---------cce-ecCCCCeE-EEEEcC-CCcEEE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------IDK-ELGSGDAV-CASIAP-EQQILA 272 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~---------~~~-~~~h~~~v-~v~~sp-~~~~la 272 (927)
...+..|+++.|+|. |...++++.+|+.+++|.... ++. +.+|.+.+ ++.|+| -...||
T Consensus 624 l~Ngt~vtDl~WdPF---------D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa 694 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPF---------DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLA 694 (1012)
T ss_pred cccCceeeecccCCC---------ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhh
Confidence 345677889888874 345566667777788886542 222 26788888 999999 577899
Q ss_pred EEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 273 ~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
+++.|-+|++||+.+ +.....+.+ |++.|..++|||||+.+|+.+.||+++|+....+
T Consensus 695 ~asyd~Ti~lWDl~~-~~~~~~l~g--------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 695 VASYDSTIELWDLAN-AKLYSRLVG--------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhccceeeeeehhh-hhhhheecc--------CcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 999999999999998 766777888 9999999999999999999999999999998665
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.08 E-value=1.7e-08 Score=100.91 Aligned_cols=194 Identities=8% Similarity=0.020 Sum_probs=126.5
Q ss_pred CCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCc--ceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCC
Q 002405 255 GSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSR 329 (927)
Q Consensus 255 ~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg 329 (927)
.+..++ +..||. +-++|.+.|-|.|..|||++.+.. ....+-. |..+|..++|+.+|. .+|+.+.||
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA--------HDKEV~DIaf~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA--------HDKEVYDIAFLKGSRDVFASVGADG 219 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe--------cCcceeEEEeccCccceEEEecCCC
Confidence 455666 888887 678999999999999999987311 2233334 999999999999775 889999999
Q ss_pred cEEEEEccCCeeEEEecccc--ccceecceecCCCCCCccccccc----ceeEEEcCCC-ceEEEEEcCCcceEEEEec-
Q 002405 330 GLTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYG-YRLYAIEEGSSERVLIFSF- 401 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~--~~~v~s~~~sp~~~~~~~~l~sg----~~~~~W~~~~-~~l~~~~~~~~~~v~~~~~- 401 (927)
.+|++|+..-.--.-+-+.. .....-+++++... .++++- ..+.+-|.+- ...+..+.+|...|..+.+
T Consensus 220 SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp---nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 220 SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP---NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred cEEEEEecccccceEEecCCCCCCcceeeccCcCCc---hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEec
Confidence 99999997643222121110 11222233333321 233322 2566666554 3456667889988855544
Q ss_pred ---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEcc-CCCEEEEEeCCc
Q 002405 402 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHG 474 (927)
Q Consensus 402 ---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~sp-dG~~la~ag~dg 474 (927)
...+.|++.|....+||+.+-... ..+ -|-........|..+.|+| .+.++|++....
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~-----~~~----------dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRE-----NGE----------DPILAYTAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred CCCCceeeecCCcceEEEEeccccccc-----CCC----------CchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence 667899999999999998754320 000 1221112456799999985 478888886554
No 211
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.08 E-value=5.3e-09 Score=105.39 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=78.6
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEe--eecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEec---CCeEE
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCS--VSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVE 281 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~--~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~---Dg~V~ 281 (927)
.+.|.+++| +|+|+.+++. ..+..+.+|+........-+.... .+.|||+|++||+|+. .|.+.
T Consensus 59 ~~~I~~~~W----------sP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 59 EGPIHDVAW----------SPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCceEEEEE----------CcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 345777777 5566654433 234567788875322222234455 8999999999999874 46799
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc------CCcEEEEEccCCe
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR 340 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~------Dg~v~vW~~~~~~ 340 (927)
+||+++ .+.+.+.. | ..++.++|||||++|+++.. |++++||+..|..
T Consensus 129 ~wd~~~-~~~i~~~~---------~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 129 FWDVRK-KKKISTFE---------H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEECCC-CEEeeccc---------c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 999986 54444332 3 34789999999999999874 7999999997654
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.08 E-value=5e-09 Score=106.22 Aligned_cols=231 Identities=15% Similarity=0.158 Sum_probs=158.4
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
.++ |-|||+|.+.+|++.++..|.||...... +..++++. |.+.|+.|.|+|.+..|++|+.|+.-.||
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--------hCcceeEEeecCCCCceeEccCCCCcccc
Confidence 456 99999999999999999999999987622 35677777 99999999999999999999999999999
Q ss_pred Ec-cCCeeEEE--eccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEE----cCCcceEEEEec---
Q 002405 335 SV-SGCRLMST--IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF--- 401 (927)
Q Consensus 335 ~~-~~~~~~~~--l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~----~~~~~~v~~~~~--- 401 (927)
.. .++.-..+ |..+ ...++++.++|.+ ..++.|+ .+-+|-.++..-+-+. +.+.+.|..+++
T Consensus 83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99 55543222 2233 5678999999998 6666665 5666766666555433 345667777777
Q ss_pred cceeeecccCCCeeeeeeeecCCeEEEeecCCCC-cceEEE----eecCcccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002405 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD-ELKILH----LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (927)
Q Consensus 402 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~-~~~w~~----~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i 476 (927)
.-.+++||.|+..+++...-.+ -.+.+ ...|.. .++...+....+.|..+.|||+|..||=.+.|+.+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~-------Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKG-------VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cceecccccCcceeEEEEeeec-------cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 4467889999988887632111 11111 112321 22233444556789999999999999999999999
Q ss_pred -EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEE
Q 002405 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV 510 (927)
Q Consensus 477 -~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li 510 (927)
+=|....+- .......++ +.-..+.|....-+
T Consensus 231 ~~~da~~p~~-~v~~~~~~~-lP~ls~~~ise~~v 263 (361)
T KOG1523|consen 231 SFVDAAGPSE-RVQSVATAQ-LPLLSVSWISENSV 263 (361)
T ss_pred EEeecCCCch-hccchhhcc-CCceeeEeecCCce
Confidence 656544321 111222222 33456677644333
No 213
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.06 E-value=5.2e-09 Score=119.39 Aligned_cols=239 Identities=14% Similarity=0.125 Sum_probs=154.8
Q ss_pred eEEEEEeC-CcEEEEeeecCccceeeecccce--e-------cCCCCeE-EEEEcCCC--cEEEEEecCCeEEEEeccCC
Q 002405 222 LLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDK--E-------LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAES 288 (927)
Q Consensus 222 ~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~~~--~-------~~h~~~v-~v~~sp~~--~~la~g~~Dg~V~vwd~~~~ 288 (927)
.++.++|. ..+++.|..+|.+-+||...+.. . ..|..++ .+.|-.+. .-+++++.||.|..|+++.-
T Consensus 246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l 325 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDML 325 (555)
T ss_pred eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccc
Confidence 33444443 34555556667777788765433 1 3577777 77776544 44999999999999998752
Q ss_pred CcceEEEee--ec-CCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCee--------EEEeccccccceecc
Q 002405 289 ASLIRTVSL--YD-WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MSTIRQISLSSISSP 356 (927)
Q Consensus 289 ~~~~~~l~~--~~-~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~--------~~~l~~~~~~~v~s~ 356 (927)
..+...+.. .. .+....-...+++++|.| +-..+++|.++|.|.--+-.+.+. ......| .+.|.++
T Consensus 326 ~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h-~g~v~~v 404 (555)
T KOG1587|consen 326 SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH-IGPVYAV 404 (555)
T ss_pred ccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc-CcceEee
Confidence 111111111 00 011111345689999998 677899999999987743332211 1122233 6788898
Q ss_pred eecCCCCCCcccccccc-eeEEEcCC-CceEEEEEcCCcceE--EEEeccc--eeeecccCCCeeeeeeeecCCeEEEee
Q 002405 357 IVKPNQDCKYEPLMSGT-SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 357 ~~sp~~~~~~~~l~sg~-~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~~~--~~~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
.++|-.. ..++.+|. ++++|.-. ....+.....+...+ ++.++.+ .++++..||.+.+||+++...+
T Consensus 405 ~~nPF~~--k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~----- 477 (555)
T KOG1587|consen 405 SRNPFYP--KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE----- 477 (555)
T ss_pred ecCCCcc--ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC-----
Confidence 8888872 12233333 99999977 556666666666667 5666644 5678888999999999876653
Q ss_pred cCCCCcceEEEeecCcc-cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 431 SEDTDELKILHLNLPVS-YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~-~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
|.. ..-+..+.+.+.++++|+.||+|...|.+ +|++..
T Consensus 478 --------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 --------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 321 11224456778889999999999999999 999854
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.4e-08 Score=116.20 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=131.7
Q ss_pred CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec---CcEEEEEEEEecCceeecCCCCCCCccce
Q 002405 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (927)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~---dg~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (927)
..|.+||.+... ...+.+ ..+.+.+.+|||||+.||..+. +..+.+|++..+.......
T Consensus 179 ~~l~~~d~dg~~--~~~lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~---------- 240 (429)
T PRK03629 179 YELRVSDYDGYN--QFVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------- 240 (429)
T ss_pred eeEEEEcCCCCC--CEEeec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----------
Confidence 368888875221 111222 2245678999999999997653 3467788875433211100
Q ss_pred eeeEEeecccccccccceEEEeeccCCeEEEE-ecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccC
Q 002405 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (927)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~-~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 195 (927)
..+.... ..+++|++.|+.. ..+|...++.|+........
T Consensus 241 -----------~~~~~~~-~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~--------------------------- 281 (429)
T PRK03629 241 -----------FPRHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ--------------------------- 281 (429)
T ss_pred -----------CCCCcCC-eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------------
Confidence 0111111 3678888888765 34565444445433221111
Q ss_pred CCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec-Cccceee--ecccc--eecCCCCeE-EEEEcCCCc
Q 002405 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAE--FIKID--KELGSGDAV-CASIAPEQQ 269 (927)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~~~~w~--~~~~~--~~~~h~~~v-~v~~sp~~~ 269 (927)
+......+.. ..++|||+.++..+++ +..++|. ...++ .+..+.... +.+|+|||+
T Consensus 282 --------lt~~~~~~~~----------~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 282 --------VTDGRSNNTE----------PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred --------ccCCCCCcCc----------eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 0001111222 3457888877666653 3445553 32221 122233334 789999999
Q ss_pred EEEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc---EEEEEccCCeeEE
Q 002405 270 ILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMS 343 (927)
Q Consensus 270 ~la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~---v~vW~~~~~~~~~ 343 (927)
+||..+.+ ..|.+||+++ +. ...+.. .......+|||||+.|+.++.++. +.++++.|+ ...
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~~ 411 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKA 411 (429)
T ss_pred EEEEEEccCCCceEEEEECCC-CC-eEEeCC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-CeE
Confidence 99886654 3578888876 43 333332 112346789999999999998875 667777554 445
Q ss_pred EeccccccceecceecCC
Q 002405 344 TIRQISLSSISSPIVKPN 361 (927)
Q Consensus 344 ~l~~~~~~~v~s~~~sp~ 361 (927)
.+.++ ...+..++|+|-
T Consensus 412 ~l~~~-~~~~~~p~Wsp~ 428 (429)
T PRK03629 412 RLPAT-DGQVKFPAWSPY 428 (429)
T ss_pred ECccC-CCCcCCcccCCC
Confidence 56654 556777777763
No 215
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.05 E-value=5e-09 Score=104.67 Aligned_cols=204 Identities=14% Similarity=0.191 Sum_probs=134.2
Q ss_pred hhhcccccEEEEcCCcc-----EEEEEecCcEEEEEEEEecCceeec----CCCCCCCccceeeeEEeecccccccccce
Q 002405 64 VQREGENLQAVWSPDTK-----LIAVVTSSLYLHIFKVQITEKSIQI----GGKQPSGLFFIKISLVLNEQLPFAEKGLS 134 (927)
Q Consensus 64 l~~~G~~~~v~wspDg~-----~Lav~t~dg~l~i~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (927)
+.+.-+.+.+.|.||.. .|| |++.++|+|.+......... ..+... ...++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLA--Ts~D~LRlWri~~ee~~~~~~~~L~~~kns------------------~~~aP 152 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLA--TSSDFLRLWRIGDEESRVELQSVLNNNKNS------------------EFCAP 152 (364)
T ss_pred CCCCCCccceEecCCccccCcchhh--cccCeEEEEeccCcCCceehhhhhccCccc------------------ccCCc
Confidence 44556778999999984 344 45669999999754432211 111110 11224
Q ss_pred EEEeec---cCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccE
Q 002405 135 VSNIVS---DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (927)
Q Consensus 135 v~~i~~---~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (927)
+++|-. +...+.+++-|-+..+|+. +..... .++..+..|+..|
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdi--e~~~~~-------------------------------~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDI--ETGVSG-------------------------------TVKTQLIAHDKEV 199 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEE--eecccc-------------------------------ceeeEEEecCcce
Confidence 455543 3455666666777766443 332111 1224456788889
Q ss_pred EEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeecccce--e----cCCCCeE-EEEEcC-CCcEEEEEecC-CeEE
Q 002405 212 IWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK--E----LGSGDAV-CASIAP-EQQILAVGTRR-GVVE 281 (927)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~--~----~~h~~~v-~v~~sp-~~~~la~g~~D-g~V~ 281 (927)
.+++|.. +|+ ++++.+.||.++++|+...+. . .....+. .++||+ |-+++|+-..| ..|.
T Consensus 200 ~DIaf~~----------~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 200 YDIAFLK----------GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred eEEEecc----------CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 9988733 333 566667778888887765321 1 1113344 889998 45678875555 5799
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEccC
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~Dg~v~vW~~~~ 338 (927)
+-|++.+...+..++. |.+.|+.++|.|. ++.|++|++|..+-+||+..
T Consensus 270 iLDiR~P~tpva~L~~--------H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRN--------HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred EEEecCCCcceehhhc--------CcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999987778888888 9999999999994 66999999999999999964
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.2e-09 Score=109.08 Aligned_cols=187 Identities=21% Similarity=0.267 Sum_probs=134.3
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEccCC
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~Dg~v~vW~~~~~ 339 (927)
.++|++..--+|++..|-+||+|+-.. .....++.. ....|+|++|.|. ++-||+|.. ++|.+|.....
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~-------sQrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSV-------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC--CCCceecch-------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 689999888899999999999999765 333334331 3567999999995 568888887 79999987421
Q ss_pred e------------eEEEeccccccceecceecCCCCCCcccccccc----eeEEEcCCCceEEEEEcCCcc--eEEEEec
Q 002405 340 R------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSE--RVLIFSF 401 (927)
Q Consensus 340 ~------------~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~--~v~~~~~ 401 (927)
. ....+++.+...|+++++.+|+ ..+++++ .+++|+++++...-...-.-+ ..+.+++
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 1 1223344445789999999998 6666655 899999998865544321122 3477777
Q ss_pred -cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEc
Q 002405 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (927)
Q Consensus 402 -~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~ 480 (927)
+..+..+..|+.-++|...+.-.+ ....-..+.|...+|||+|++|..+......+|++
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred CCCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 888999999999999965443221 11122234799999999999999888777678887
Q ss_pred c
Q 002405 481 R 481 (927)
Q Consensus 481 ~ 481 (927)
.
T Consensus 309 ~ 309 (445)
T KOG2139|consen 309 T 309 (445)
T ss_pred e
Confidence 4
No 217
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=3.4e-09 Score=114.97 Aligned_cols=256 Identities=12% Similarity=0.109 Sum_probs=148.3
Q ss_pred ceEEEEEecCeEEEEEc-cCeEEEeecCC---c----eeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEE
Q 002405 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQ---H----KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~-~~~v~IW~~~~---~----~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i 93 (927)
..++.|-|....|++++ ++++.+|+..+ + -.++-.+. .+.|++.|++.++.+..+.+|+.||+|+.
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr------aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR------AHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe------cccCceEEEEecCCceEEEeeccCceeee
Confidence 34455666666778885 88999999921 1 11122221 35799999999999999999999999999
Q ss_pred EEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeecc
Q 002405 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~ 171 (927)
|++...... +. .+.+. ... -.+.++...|.. ++...++|+.++.||+++.| +........+.
T Consensus 371 w~~p~n~dp-~d-s~dp~---------vl~--~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w--~~~~~~~~~f~- 434 (577)
T KOG0642|consen 371 WNLPPNQDP-DD-SYDPS---------VLS--GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW--EPTEESPCTFG- 434 (577)
T ss_pred eccCCCCCc-cc-ccCcc---------hhc--cceeccccceeeeeecccccceeeecCCceEEee--ccCCcCccccC-
Confidence 998622111 10 01000 000 112334444433 44556889999999999885 43322221000
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCc----cceeee
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG----LKLAEF 247 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~----~~~w~~ 247 (927)
.. ...+.-.++++-..- .+....+++...+...+.. +++...
T Consensus 435 --------------~~------------------~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s 480 (577)
T KOG0642|consen 435 --------------EP------------------KEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFES 480 (577)
T ss_pred --------------Cc------------------cccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccc
Confidence 00 000000111110000 0000011111111111110 000000
Q ss_pred cccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 248 IKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 248 ~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
..... .....-+ -+..+|.+.+..++..|+.|+++|..+ +..++.... |...|+++++-|+|-+|++|+
T Consensus 481 ~~~~~-~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a--------~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 481 SASPG-PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVA--------HKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred cCCCc-ccccCccceEEecCCCCeeEecccCCceecccccc-cccchheee--------ccceecceeecCCCceEEeec
Confidence 00000 0011223 677889999999999999999999988 778877777 999999999999999999999
Q ss_pred cCCcEEEEEccCCeeEE
Q 002405 327 KSRGLTVWSVSGCRLMS 343 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~ 343 (927)
.||.+++|.+....++.
T Consensus 551 ~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKTCVL 567 (577)
T ss_pred CCceeehhhccchheee
Confidence 99999999987655443
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.04 E-value=1.1e-08 Score=103.80 Aligned_cols=240 Identities=16% Similarity=0.158 Sum_probs=151.5
Q ss_pred ccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc------eecCCCCeE-EEEEcCCCcEEEEEecCCeEE
Q 002405 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (927)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~ 281 (927)
.+|++.+| ++|+..++++.+...+.++...... .+..|...+ ++.|+|....|++|+.|..-.
T Consensus 11 ~pitchAw----------n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAW----------NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred Cceeeeee----------cCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 45666665 6777777777776666665544333 226788888 999999999999999999999
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEE---Eeccccccceeccee
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS---TIRQISLSSISSPIV 358 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~---~l~~~~~~~v~s~~~ 358 (927)
||....++.-..++-... +.+.+++|.|+|.++.+|+|+.-+.|.||-.++..-.. .++-...+.|.++.+
T Consensus 81 Vw~~~~~~~WkptlvLlR------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLR------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred ccccCCCCeeccceeEEE------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 999854354333333221 78999999999999999999999999999887654332 222223577999999
Q ss_pred cCCCCCCcccccccc---eeEEEcC-----CC-------------ceEEEEEcCCcceE--EEEec-cceeeecccCCCe
Q 002405 359 KPNQDCKYEPLMSGT---SMMQWDE-----YG-------------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMT 414 (927)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~-----~~-------------~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~ 414 (927)
+|++ -.++.|+ .+++++. +. ++++.......+.+ +.|++ |..++-.+.|+++
T Consensus 155 hpnn----VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 155 HPNN----VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cCCc----ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 9998 6676666 3444321 10 11222111222334 44444 6666666777766
Q ss_pred eeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC-CcEEee
Q 002405 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVF 488 (927)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s-~~w~~f 488 (927)
.+-|.....++ ++......-|.+++.|-.+ ..++.||.|... ++.... +.|...
T Consensus 231 ~~~da~~p~~~-------------------v~~~~~~~lP~ls~~~ise-~~vv~ag~~c~P~lf~~~~~~~l~~~ 286 (361)
T KOG1523|consen 231 SFVDAAGPSER-------------------VQSVATAQLPLLSVSWISE-NSVVAAGYDCGPVLFVTDEEGGLSFA 286 (361)
T ss_pred EEeecCCCchh-------------------ccchhhccCCceeeEeecC-CceeecCCCCCceEEEeccccceeee
Confidence 65443322211 2222222367788887533 456667777444 665433 356543
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.03 E-value=1.1e-08 Score=103.13 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=76.2
Q ss_pred CCeE-EEEEcCCCcEEEEE--ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---Cc
Q 002405 257 GDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RG 330 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g--~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---g~ 330 (927)
..+| +++|+|+|+.+|+. ..++.|.+||++ +..+..+ +.+.++.+.|||+|++||+|+.+ |.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee----------cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 4457 99999999987664 467799999996 4444443 45678899999999999998754 56
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
+.+||+...+.+.+.+. ..++.+.|+|+| +.++++.
T Consensus 127 l~~wd~~~~~~i~~~~~---~~~t~~~WsPdG----r~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEH---SDATDVEWSPDG----RYLATAT 162 (194)
T ss_pred EEEEECCCCEEeecccc---CcEEEEEEcCCC----CEEEEEE
Confidence 99999998888777653 346788999998 7777654
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=4.1e-08 Score=101.06 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=109.2
Q ss_pred cCCCCeEEEEEcCCCcEEEEEec-CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v~v~~sp~~~~la~g~~-Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.||...++++|++||..+++++- |..|.|||.++ +..+..... .-|.++-+.|||||.+|.++.-|++.+
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~--------glgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPK--------GLGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCccccccc--------CCCceeeEEEcCCCCEEEEecccceee
Confidence 57754449999999999999875 56899999998 554443322 467899999999999999999999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCccccccc-ceeEEEcCCCceEEEEEcCCcceEEEEec-cceeeeccc
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGV 410 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~ 410 (927)
+|+.... ..+.+ -.+.+| ++.-+|++.+..++.+..+ ...++.+.| ++..+.-.
T Consensus 264 lw~e~q~--wt~er--------------------w~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~- 319 (445)
T KOG2139|consen 264 LWQENQS--WTKER--------------------WILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLR- 319 (445)
T ss_pred eehhccc--ceecc--------------------eeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccC-
Confidence 9965332 11111 111222 2566799988888887766 457788887 44322111
Q ss_pred CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCce
Q 002405 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (927)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~ 475 (927)
-+.+ |.+.--.+ =.+ ..+..++.+ -.+++.+++|+|.|.|||+--+.+.
T Consensus 320 ~~~~--k~~lliaD------L~e------~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 320 PQSI--KRVLLIAD------LQE------VTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cccc--eeeeeecc------chh------hhhhcCccc--ccCccceeeECCCCCEEEEEEcCCc
Confidence 1111 11110000 000 000001112 1467899999999999998765543
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=8.5e-08 Score=110.29 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=117.5
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEec---CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE-EEEc
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWK 327 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~---Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La-sg~~ 327 (927)
+..|...+ +.+|+|||+.||..+. +..|.+||+.+ +.. ..+.. +.+.+.+.+|||||+.|+ +.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-ELVGN--------FPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-EEeec--------CCCcccCcEECCCCCEEEEEEec
Confidence 35566677 9999999999998764 46899999976 433 34444 567788899999999876 5555
Q ss_pred CCc--EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCCceEEEEEcCCcceE--E
Q 002405 328 SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--L 397 (927)
Q Consensus 328 Dg~--v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v--~ 397 (927)
++. |.+||+.++.. ..+..+ .....++.|+|++ ..++..+ .+.+|+..+++.-....+ .... .
T Consensus 267 ~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~ 339 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTP 339 (435)
T ss_pred CCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCe
Confidence 555 66778877754 344443 3456678999998 4443221 466677766544333221 1122 3
Q ss_pred EEec-cceeeecccCC---CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCC
Q 002405 398 IFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (927)
Q Consensus 398 ~~~~-~~~~~s~s~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d 473 (927)
.+++ ++.++..+.++ .+.+++...+..+ ...+...+...+|||||++|+..+.+
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----------------------~lt~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----------------------ILTSGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCceE----------------------eccCCCCCCCCeECCCCCEEEEEEcc
Confidence 4555 66665443322 2223332111110 11112235668999999999876553
Q ss_pred c------eE-EEEccCCcEEe
Q 002405 474 G------LI-LYDIRQKKWRV 487 (927)
Q Consensus 474 g------~i-~wd~~s~~w~~ 487 (927)
+ .+ ++|+.++.-+.
T Consensus 398 ~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCCCcceEEEEECCCCceEE
Confidence 2 34 66766554443
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=6.2e-08 Score=105.25 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=94.9
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCC-----CeeEEEECCCCCEEEEEEcCCc
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG-----PVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~-----~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
...+ +|.+|+-..+||+|+.||.|..||..+ .....++..... -..|.+ .|++++|+.||-.+|+|..+|.
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 4667 999999999999999999999999887 444444443221 011334 4999999999999999999999
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcC
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG 391 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~ 391 (927)
+.++|+...+++..-.....-.+..+.|.+.+ ....++|.- .+++|+..+++.+.....
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTD--QQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccC--CCceEEecchHHhhhcccccCCceeeccc
Confidence 99999988766544332224456666776553 224455544 788999999988777654
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.94 E-value=1e-09 Score=116.11 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=165.2
Q ss_pred ceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
-+.+-++.+|+.++.+...|-+-..|..+.... ..-...| .+.|-++.+++|++- ..-+.|||-. |..+++++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeehhh
Confidence 344566899999999999888877776665432 2334566 889999999999964 4678999854 677888876
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc---ce
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TS 374 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~ 374 (927)
...|..+.|-|---+||+++..|.++--|+..|+++..++.. .+.+....-+|.+ ..+-.| ++
T Consensus 209 ---------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~N----aVih~GhsnGt 274 (545)
T KOG1272|consen 209 ---------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYN----AVIHLGHSNGT 274 (545)
T ss_pred ---------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCcc----ceEEEcCCCce
Confidence 467899999999999999999999999999999999888764 5556666666665 344333 38
Q ss_pred eEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC
Q 002405 375 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (927)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (927)
+-+|++...+.+..+..|.+.| +++.. |++++|.+.|..+++||+....+ +.++..
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------------------l~t~~t- 333 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------------------LHTYRT- 333 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--------------------cceeec-
Confidence 9999999998888888899998 55555 99999999999999999986554 333332
Q ss_pred CCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 452 ~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
.-+...++||.-| .||.+ ....+ +|.
T Consensus 334 p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 334 PHPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred CCCcccccccccc-ceeee-cCCeeeeeh
Confidence 3456778998655 44433 33444 774
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.93 E-value=3e-07 Score=93.59 Aligned_cols=181 Identities=15% Similarity=0.223 Sum_probs=113.8
Q ss_pred eEEEEEcc--------CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 002405 32 GLLLIASP--------CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (927)
Q Consensus 32 ~lla~~~~--------~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (927)
++||.++. +.|.|||-. ....+..+. -.+++.+|.+++| .|++.. ++.|.+|+......++
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~-k~~~i~el~-------f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l 127 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDL-KERCIIELS-------FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLL 127 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecc-cCcEEEEEE-------eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhe
Confidence 46776632 479999964 333333333 3477889999987 566665 5579999875333222
Q ss_pred ecCCCCCCCccceeeeEEeecccccccccceEEEeeccCC-eEEE--EecCCcEEEEecCCccccceeecccCCCCcccc
Q 002405 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-HMLL--GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (927)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~v--~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~ 180 (927)
..- .-....+ .++++.+..+ .+++ |..-|.+++.+.......+.
T Consensus 128 ~~~----------------et~~NPk----GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p------------- 174 (346)
T KOG2111|consen 128 HVI----------------ETRSNPK----GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAP------------- 174 (346)
T ss_pred eee----------------ecccCCC----ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCc-------------
Confidence 110 0000001 1233333332 2222 34567888776543222110
Q ss_pred cccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCc-cceeeeccccee----cC
Q 002405 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKE----LG 255 (927)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~-~~~w~~~~~~~~----~~ 255 (927)
.....|++.|.+++ ++-+|..+|+++..|| |++||..+++.+ .|
T Consensus 175 ---------------------~~I~AH~s~Iacv~----------Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 175 ---------------------SIINAHDSDIACVA----------LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred ---------------------eEEEcccCceeEEE----------EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 12345667777654 5789999999999998 679999887665 34
Q ss_pred CCCe-E-EEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 256 SGDA-V-CASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 256 h~~~-v-~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
-..+ + |++|||+.++||++|+-||+.||.+.+
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3333 3 999999999999999999999999976
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.93 E-value=2.7e-09 Score=112.88 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=131.4
Q ss_pred hhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEee-ccC
Q 002405 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDN 142 (927)
Q Consensus 64 l~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~ 142 (927)
+.++|++ .+.++.+|+.|+.+...|+|--+|..+......+. ..+ .|..+. ..+
T Consensus 127 l~eFGPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---------------v~E---------tv~Dv~~LHn 181 (545)
T KOG1272|consen 127 LPEFGPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---------------VME---------TVRDVTFLHN 181 (545)
T ss_pred ccccCCe-eeeecCCccEEEecCCccceeeeecccceeeeeee---------------hhh---------hhhhhhhhcc
Confidence 3456775 89999999999999999999999886543211110 000 111111 112
Q ss_pred CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcce
Q 002405 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (927)
Q Consensus 143 ~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (927)
+.+++......+++++-+|... .+......+..++|
T Consensus 182 eq~~AVAQK~y~yvYD~~GtEl--------------------------------------HClk~~~~v~rLeF------ 217 (545)
T KOG1272|consen 182 EQFFAVAQKKYVYVYDNNGTEL--------------------------------------HCLKRHIRVARLEF------ 217 (545)
T ss_pred hHHHHhhhhceEEEecCCCcEE--------------------------------------eehhhcCchhhhcc------
Confidence 3333334455566654332211 11112234555555
Q ss_pred EEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeee
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
.|.--++++++..|-++-.|...++.. ..-.+.+ .+.-||-+..+-+|..+|+|.+|.-.. .+++..+-.
T Consensus 218 ----LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc- 291 (545)
T KOG1272|consen 218 ----LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC- 291 (545)
T ss_pred ----cchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh-
Confidence 455555555555555555565555443 1123455 788999999999999999999999876 556655555
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
|.++|.+|++.|+|+++||++.|+.++|||+..-....++..
T Consensus 292 -------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 292 -------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred -------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 999999999999999999999999999999987665555543
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5.1e-07 Score=98.54 Aligned_cols=305 Identities=14% Similarity=0.168 Sum_probs=173.6
Q ss_pred eEEEEEecCeEEEEEccCeEEEeecCCce-eEEEEEeeChHhhhhcccccEEEEcCCccEEEEE-----ecC-----cEE
Q 002405 23 QIIYFKVNNGLLLIASPCHIELWSSSQHK-VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-----TSS-----LYL 91 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~~~~v~IW~~~~~~-~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~-----t~d-----g~l 91 (927)
.+.++|++|++||.+++..+.|.+.. .. +.++... . ..+++.|||-|.+|.+= ..+ -.+
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~-~~~~~lt~~~--------~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIA-TLKVVLCVEL--------K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEcc-CCcEEEEecc--------c-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 36789999999999999999999985 33 3333221 1 44799999999988761 111 236
Q ss_pred EEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecc
Q 002405 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 92 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~ 171 (927)
++|+++++-....+....+. -|+..++. .+.+++-...+.++.+.... .....
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~---~W~~qfs~-------------------dEsl~arlv~nev~f~~~~~-f~~~~---- 160 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQN---GWVPQFSI-------------------DESLAARLVSNEVQFYDLGS-FKTIQ---- 160 (566)
T ss_pred eeeeeccceehhheehhhhc---Cccccccc-------------------chhhhhhhhcceEEEEecCC-cccee----
Confidence 67777753222111111111 02222111 12222223345555554332 11100
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCc--ceEEEEEeCCcEEEEeeecCccceeeecc
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~~~s~dG~~~~~~~~d~~~~~w~~~~ 249 (927)
..-+...|..++.+|.. ...+++.|..+ +.-..+++|....
T Consensus 161 --------------------------------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k-----GaPa~vri~~~~~ 203 (566)
T KOG2315|consen 161 --------------------------------HKLSVSGITMLSLSPGPEPPFVAVYVPEKK-----GAPASVRIYKYPE 203 (566)
T ss_pred --------------------------------eeeeccceeeEEecCCCCCceEEEEccCCC-----CCCcEEEEecccc
Confidence 01123345555665552 23333333221 1112244444331
Q ss_pred cce---e----cCCCCeEEEEEcCCCc-EEEEEe--cCC---------eEEEEeccCCCcceEEEeeecCCCCCCCCCCe
Q 002405 250 IDK---E----LGSGDAVCASIAPEQQ-ILAVGT--RRG---------VVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (927)
Q Consensus 250 ~~~---~----~~h~~~v~v~~sp~~~-~la~g~--~Dg---------~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (927)
... . --..+.|.+.||+.|. +|+.++ -|. ++.+.+++. ......+. ..|||
T Consensus 204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~---------k~GPV 273 (566)
T KOG2315|consen 204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVPLL---------KEGPV 273 (566)
T ss_pred ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEEecC---------CCCCc
Confidence 100 0 1124567889999876 333333 233 455555442 22222222 47999
Q ss_pred eEEEECCCCCEEEEEE--cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCC
Q 002405 311 SCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYG 382 (927)
Q Consensus 311 ~~l~~spdg~~Lasg~--~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~ 382 (927)
.++.|+|+|+-++++. .=.++.|+|+.+. ++..+. .+.-+.+.|+|.+ ..++-++ .+-+||..+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~---egpRN~~~fnp~g----~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFP---EGPRNTAFFNPHG----NIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCC---CCCccceEECCCC----CEEEEeecCCCCCceEEEeccc
Confidence 9999999999877754 4468999999764 555554 4456788899998 5543322 788999999
Q ss_pred ceEEEEEcCCcceEEEEec-cceeeeccc------CCCeeeeee
Q 002405 383 YRLYAIEEGSSERVLIFSF-GKCCLNRGV------SGMTYARQV 419 (927)
Q Consensus 383 ~~l~~~~~~~~~~v~~~~~-~~~~~s~s~------d~~~~~w~~ 419 (927)
.+++.........+..+++ |+.++|+.. |+.+++|++
T Consensus 346 ~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 346 RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9998888877777888888 888876654 566777774
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=9.1e-08 Score=109.90 Aligned_cols=232 Identities=14% Similarity=0.122 Sum_probs=125.0
Q ss_pred eEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecCCCCCCCcccee
Q 002405 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIK 117 (927)
Q Consensus 41 ~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d---g~l~i~~l~~~~~~~~~~~~~~~~~~~~~ 117 (927)
+|.|||.+ .. ....+.+ ..+.+.+.+|||||+.|+..+.+ ..|.+|++..+.... ....
T Consensus 185 ~l~i~D~~-g~-~~~~lt~------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~--------- 246 (433)
T PRK04922 185 ALQVADSD-GY-NPQTILR------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF--------- 246 (433)
T ss_pred EEEEECCC-CC-CceEeec------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC---------
Confidence 68888874 21 1111211 23456789999999999987643 368888876433211 1000
Q ss_pred eeEEeecccccccccceEEEeeccCCeEEEE-ecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCC
Q 002405 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (927)
Q Consensus 118 ~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~-~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 196 (927)
.+.. ....++++++.+++. ..+|.-.++.|+........
T Consensus 247 -----------~g~~-~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---------------------------- 286 (433)
T PRK04922 247 -----------RGIN-GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---------------------------- 286 (433)
T ss_pred -----------CCCc-cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------------------
Confidence 0000 112567788877654 44554333444432221111
Q ss_pred CceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeee-cCcccee--eecccc--eecCCCCeE-EEEEcCCCcE
Q 002405 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQI 270 (927)
Q Consensus 197 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~w--~~~~~~--~~~~h~~~v-~v~~sp~~~~ 270 (927)
+..+...... ..++|||+.++..++ ++...+| +...++ .+..+.... ..+|||+|+.
T Consensus 287 -------lt~~~~~~~~----------~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 287 -------LTNHFGIDTE----------PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred -------CccCCCCccc----------eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence 0001111111 345788887776664 3343444 332222 122222334 7899999999
Q ss_pred EEEEecCC---eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---CcEEEEEccCCeeEEE
Q 002405 271 LAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMST 344 (927)
Q Consensus 271 la~g~~Dg---~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---g~v~vW~~~~~~~~~~ 344 (927)
||..+.++ .|.+||+.+ +.. ..+. +.......+|+|||+.++..+.+ +.+.++++.++ ....
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt---------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~ 417 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLST-GSV-RTLT---------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQR 417 (433)
T ss_pred EEEEECCCCceeEEEEECCC-CCe-EECC---------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEE
Confidence 99876543 689999875 433 2232 22234567999999988877664 34677777654 3444
Q ss_pred eccccccceecceecC
Q 002405 345 IRQISLSSISSPIVKP 360 (927)
Q Consensus 345 l~~~~~~~v~s~~~sp 360 (927)
+..+ ...+..++|+|
T Consensus 418 l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSA-DGEVREPAWSP 432 (433)
T ss_pred cccC-CCCCCCCccCC
Confidence 4433 34455556554
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.5e-08 Score=109.24 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=99.6
Q ss_pred cccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcC--CCcEEEEEe
Q 002405 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAP--EQQILAVGT 275 (927)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp--~~~~la~g~ 275 (927)
.+.+|.++|.+++| +.||.++++|++|-.+.+||....+.+ .||..-| |+.|=| +.+++++|.
T Consensus 45 eL~GH~GCVN~LeW----------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEW----------NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhccccceecceee----------cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 45789999999987 789999999999999999998754443 7999999 999999 578999999
Q ss_pred cCCeEEEEeccCC---------CcceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEccC
Q 002405 276 RRGVVELYDLAES---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 276 ~Dg~V~vwd~~~~---------~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~Dg~v~vW~~~~ 338 (927)
.|..|++||++.. ....+.+.- |+..|..++-.|+| +.+-++++||+++=+|+..
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--------ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSC--------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhh--------hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999999999741 122333344 99999999999998 8999999999999999965
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1e-07 Score=109.10 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=121.3
Q ss_pred ceEEEEEeCCcEEEEeee---cCccceeeecccce--ecCCCCeE-EEEEcCCCcEEEEE-ecCC--eEEEEeccCCCcc
Q 002405 221 RLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASL 291 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~---d~~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la~g-~~Dg--~V~vwd~~~~~~~ 291 (927)
.....++|||+.++..+. +..+.+++...++. +......+ ..+|||||+.||.. +.+| .|.+||+++ +..
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE
Confidence 344566888887776542 23456666655432 22222334 78999999988865 4455 588888875 433
Q ss_pred eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEEE--EccCCeeEEEeccccccceecceecCCCCCCccc
Q 002405 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (927)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g~v~vW--~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~ 368 (927)
..+.. +...+...+|||||+.|+..+.+ +...|| ++.++.. ..+... ......+.++|++ ..
T Consensus 280 -~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~~ 344 (429)
T PRK03629 280 -RQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KF 344 (429)
T ss_pred -EEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----CE
Confidence 33333 34567889999999999877764 455666 5555543 333332 2345678899998 54
Q ss_pred ccccc------eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeee--cCCeEEEeecCCCCcceE
Q 002405 369 LMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY--GEDRLLVVQSEDTDELKI 439 (927)
Q Consensus 369 l~sg~------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~--~~~~~~~~~~~~~~~~~w 439 (927)
++... .+.+|+.++++.......+...-..+++ |+.++..+.++....+.+.. +..
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~--------------- 409 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF--------------- 409 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC---------------
Confidence 43221 4667888776644333322222244556 77777776666533322222 222
Q ss_pred EEeecCcccccCCCceEEEEEcc
Q 002405 440 LHLNLPVSYISQNWPVQHVAASK 462 (927)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~sp 462 (927)
+..+.+|.+.++..+|||
T Consensus 410 -----~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 -----KARLPATDGQVKFPAWSP 427 (429)
T ss_pred -----eEECccCCCCcCCcccCC
Confidence 334445667777788887
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.3e-07 Score=108.22 Aligned_cols=172 Identities=14% Similarity=0.163 Sum_probs=102.0
Q ss_pred EEEEeCCcEEEEeeec---Cccceeeeccccee--cCCCCeE-EEEEcCCCcEEE-EEecCCeEEEEeccCCCcceEEEe
Q 002405 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la-~g~~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
..++|||+.++..+.+ ..+.+|+..+++.. ....... +.+|||||+.|| +.+.+|..+||.++..+.....+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 3457888877766542 24677787655432 2233344 889999999887 467788888887754233344443
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEc--cCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW~~--~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
. +.+.+.+.+|||||+.|+..+. +|...||.+ .++... .+... ......+.|+|++ +.++...
T Consensus 281 ~--------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-g~~~~~~~~SpDG----~~Ia~~s 346 (427)
T PRK02889 281 Q--------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-GSYNTSPRISPDG----KLLAYIS 346 (427)
T ss_pred C--------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-CCCcCceEECCCC----CEEEEEE
Confidence 3 5555677899999998886664 467777765 444322 22211 1223467899998 5544221
Q ss_pred ------eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecc
Q 002405 374 ------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (927)
Q Consensus 374 ------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s 409 (927)
.+.+|+..+++......++...-..+++ ++.++..+
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence 5778887766544332222122234444 55554443
No 231
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=3.6e-07 Score=92.51 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=51.1
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCc-eeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQH-KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~-~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
++.+.||++||++.|..|.|=..+-. ...++...-.. ..+-.-..++||||+..||.+.+.|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk---D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPK---DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCC---CCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 56789999999999999999877411 11122221111 1122235899999999999999999999999863
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=103.36 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=86.9
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcE-EEEEecCCeEEEEeccCCCcceEEEee
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~-la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
.++.+||+|+++++.+.- .+-+-|..+.+.. .--.+.+-+.|..|... |.....|+.|.+|++.. .+-..++..
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckIde 89 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKIDE 89 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEecc
Confidence 357789999998877654 3333333332211 11122336788887665 55678899999999976 444444444
Q ss_pred ecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
...++.+++|||||+ .|.+..-|-.|.||++.+..... -.|....+..++|+|++
T Consensus 90 --------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 90 --------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDG 145 (447)
T ss_pred --------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCC
Confidence 577899999999996 55566678899999998765432 23335567888999998
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=4.3e-07 Score=104.06 Aligned_cols=73 Identities=26% Similarity=0.327 Sum_probs=53.5
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE-EEEcC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La-sg~~D 328 (927)
..+...+ +.+|||||+.||..+.+ ..|.+||+.+ ++.. .+.. ..+.+.+.+|||||+.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~--------~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVAN--------FKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-Eeec--------CCCCccceEECCCCCEEEEEEccC
Confidence 4556667 99999999999987743 3699999976 5432 3333 345667899999999887 46677
Q ss_pred CcEEEEEc
Q 002405 329 RGLTVWSV 336 (927)
Q Consensus 329 g~v~vW~~ 336 (927)
|...||.+
T Consensus 262 g~~~Iy~~ 269 (427)
T PRK02889 262 GNSQIYTV 269 (427)
T ss_pred CCceEEEE
Confidence 87777765
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=3.5e-07 Score=105.06 Aligned_cols=204 Identities=15% Similarity=0.143 Sum_probs=118.2
Q ss_pred cceeeecc--cceecCCCCeE-EEEEcCCCcEEEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEE
Q 002405 242 LKLAEFIK--IDKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (927)
Q Consensus 242 ~~~w~~~~--~~~~~~h~~~v-~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (927)
+.+||... ...+..+...+ +.+|+|||+.||..+.+ ..|.+||+.+ +.. ..+.. +.+...+.+|
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~--------~~g~~~~~~~ 255 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVAS--------FRGINGAPSF 255 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEecc--------CCCCccCceE
Confidence 44555432 22234555666 89999999999987743 4799999976 432 23333 4455568899
Q ss_pred CCCCCEEE-EEEcCC--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCCceEE
Q 002405 316 TPDNSAFA-VGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLY 386 (927)
Q Consensus 316 spdg~~La-sg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~ 386 (927)
||||+.|+ +.+.+| .|.+||+.++.. ..+..+ .....++.|+|++ ..++..+ .+..++..+++..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~spDG----~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNH-FGIDTEPTWAPDG----KSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCeE
Confidence 99999776 445555 489999988764 334333 3345678999998 5443222 3555565555433
Q ss_pred EE-EcCCcceEEEEec-cceeeecccCC---CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEc
Q 002405 387 AI-EEGSSERVLIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (927)
Q Consensus 387 ~~-~~~~~~~v~~~~~-~~~~~s~s~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s 461 (927)
.. ..++...-..+++ ++.++..+.++ .+.+|++..+..+ .+ .+.....+.+||
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------~L-t~~~~~~~p~~s 387 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------TL-TPGSLDESPSFA 387 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------------------EC-CCCCCCCCceEC
Confidence 22 2222222245566 66665433222 3455554332221 11 111123457899
Q ss_pred cCCCEEEEEeCC---ceE-EEEccCC
Q 002405 462 KDGMFLAVAGLH---GLI-LYDIRQK 483 (927)
Q Consensus 462 pdG~~la~ag~d---g~i-~wd~~s~ 483 (927)
|||++++.++.+ +.+ .++..++
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCC
Confidence 999998877764 234 6666543
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=3.9e-07 Score=104.85 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=93.8
Q ss_pred eEEEEEeCCcEEEEeee---cCccceeeecccce--ecCCCCeE-EEEEcCCCcEEE-EEecCCe--EEEEeccCCCcce
Q 002405 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILA-VGTRRGV--VELYDLAESASLI 292 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---d~~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la-~g~~Dg~--V~vwd~~~~~~~~ 292 (927)
....++|||+.++..+. +..+.+|+..+++. +..+...+ +.+|||||+.|| +.+.+|. |.+||+++ + ..
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~-~~ 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-G-TT 282 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC-C-ce
Confidence 34556888887776653 34677888765543 23445556 889999999876 4556665 55557654 3 33
Q ss_pred EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc
Q 002405 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (927)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l 369 (927)
..+.. +.+...+.+|||||+.|+..+.. | .|.+||+.++... .+..+ ...+..+.|+|++ +.+
T Consensus 283 ~~Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~SpdG----~~i 348 (435)
T PRK05137 283 TRLTD--------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSPRG----DLI 348 (435)
T ss_pred EEccC--------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECCCC----CEE
Confidence 44443 55667789999999999887743 3 4777888776443 33222 3446678899998 444
Q ss_pred ccc------ceeEEEcCCCce
Q 002405 370 MSG------TSMMQWDEYGYR 384 (927)
Q Consensus 370 ~sg------~~~~~W~~~~~~ 384 (927)
+.. ..+.+|+..++.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc
Confidence 321 155667765543
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.74 E-value=7.6e-06 Score=91.03 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=146.9
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEee
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
..+.+++||+++++.+.|+.+.++|..+.+.. ..-..+.++++|+||+++++++ .++++.++|.++ .+.++.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc
Confidence 34567899998888888999999998876543 2223455999999999988775 689999999987 777776665
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEEEEccCCee--EEEeccccccceecceecCCCCCCcccccccc-
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g~v~vW~~~~~~~--~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (927)
...+... ....+.++.-+|+...++..-.| +.|.+-|...... ...+.. ........++|++ ++++.+.
T Consensus 119 ~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg----ry~~va~~ 191 (369)
T PF02239_consen 119 GGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG----RYFLVAAN 191 (369)
T ss_dssp -EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS----SEEEEEEG
T ss_pred ccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc----ceeeeccc
Confidence 3221111 34568889899999877777665 6665667654322 222221 1223445677877 5544332
Q ss_pred ---eeEEEcCCCceEEEEEc----CCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCC----CcceEEEe
Q 002405 374 ---SMMQWDEYGYRLYAIEE----GSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT----DELKILHL 442 (927)
Q Consensus 374 ---~~~~W~~~~~~l~~~~~----~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~----~~~~w~~~ 442 (927)
.+.+++..++++..... .|..++..+...+ .-.+|..........-.-+.+. +...|+..
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~---------~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG---------FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT---------TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCC---------cceEEeeccccceecccccCCccccchhhcCeEE
Confidence 67788888877765542 2333332222100 0112322221111111111111 22345544
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEE---eC-CceE-EEEccCCcE-EeeCCccceeeeEEEEEEee--CCEEEEEEe
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVA---GL-HGLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~a---g~-dg~i-~wd~~s~~w-~~f~~~~~e~~~~v~~~~W~--~~~li~~~~ 514 (927)
+... ....+ ..+..+||++++.+. +. .+.+ ++|.++.+- +.+. ......+.++.|. |+.+.++.+
T Consensus 263 ~~I~---~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~---~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 263 KTIP---TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT---PGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp EEEE----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH---HHHT--EEEEEE-TTSSEEEEEEE
T ss_pred EEEE---CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe---ccCCCcEeccEECCCCCEEEEEEe
Confidence 3222 22334 567889999999999 44 4677 999988642 1111 1111125566775 556666655
Q ss_pred ecCCCeEEEEEeeCCCC
Q 002405 515 IDSSNTYELLFYPRYHL 531 (927)
Q Consensus 515 ~~~~~~~~l~l~~~~~l 531 (927)
... .+|.+|+...+
T Consensus 336 ~~~---~~i~v~D~~Tl 349 (369)
T PF02239_consen 336 DGN---GAIVVYDAKTL 349 (369)
T ss_dssp --T---TEEEEEETTTT
T ss_pred cCC---CEEEEEECCCc
Confidence 322 28889987533
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.72 E-value=2.7e-06 Score=94.59 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=141.1
Q ss_pred EEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEe-cCcEEEEEEEEecCce
Q 002405 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (927)
Q Consensus 25 v~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t-~dg~l~i~~l~~~~~~ 102 (927)
+.|+|||+++.++ .|+.|.++|.. ....+....-. +.-..+++||||++++++. ..+.+.++|.++-+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 6799999977666 48899999996 54444444321 2235799999999999876 6789999986532211
Q ss_pred eecCCCCCCCccceeeeEEeecccccccccceEEEe--eccCCeEEEEecC-CcEEEEecCCccccceeecccCCCCccc
Q 002405 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~l~v~~~d-g~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
...+ ...........++.++ ++.+...+++..+ |.|.+++..........
T Consensus 114 ~~I~----------------~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----------- 166 (369)
T PF02239_consen 114 KTIP----------------TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----------- 166 (369)
T ss_dssp EEEE------------------EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-----------
T ss_pred eecc----------------cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-----------
Confidence 1110 0000011122234444 3455667777664 67766665433211100
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeee-cCccceeeeccccee-----
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----- 253 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~w~~~~~~~~----- 253 (927)
.........+ ..++|||++++.+.. +..+-++|..+.+..
T Consensus 167 ------------------------~i~~g~~~~D----------~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 167 ------------------------TIKVGRFPHD----------GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp ------------------------EEE--TTEEE----------EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ------------------------eecccccccc----------cccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 0001111223 334677776655432 223334443332211
Q ss_pred --cCCCCeE-EE---------EEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCE
Q 002405 254 --LGSGDAV-CA---------SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (927)
Q Consensus 254 --~~h~~~v-~v---------~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~ 321 (927)
..|.... .+ +.+..+....+.-....+.+|+... .+.++++.. ..++ .-++-+||+++
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~--------~G~g-lFi~thP~s~~ 282 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPT--------QGGG-LFIKTHPDSRY 282 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE---------SSSS---EE--TT-SE
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhc-CeEEEEEEC--------CCCc-ceeecCCCCcc
Confidence 1122222 11 1222233332222333556677766 677777776 4555 78889999999
Q ss_pred EEEE----EcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc---c-eeEEEcCCCceEEEEE
Q 002405 322 FAVG----WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---T-SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 322 Lasg----~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg---~-~~~~W~~~~~~l~~~~ 389 (927)
+.+. ...++|.|+|..+.+...++.......+..+.|+++|. +.++|. . .+.++|..+.++....
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 9998 44489999999998877777643223477788999982 222321 1 4666666666655544
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.69 E-value=9.2e-06 Score=87.86 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCcEEEEEec-----------CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 258 DAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~-----------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
+.+.+.|++.|.+|.+-.. ..++.+++++. ..++.... -.++|.+.+|+|+++.+++.+
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~--------~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKD--------LKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceecc--------ccccceeeeecccCCceeEEe
Confidence 4456788888877654221 23455555542 22222222 589999999999999777655
Q ss_pred --cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCCceEEE-EEcCCcceEE
Q 002405 327 --KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYA-IEEGSSERVL 397 (927)
Q Consensus 327 --~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~-~~~~~~~~v~ 397 (927)
.+-++.++++.+. +...+.. ..-+.+.|+|.. ..++.+. .+.+|++.+.-... ...+......
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~Pe---~~rNT~~fsp~~----r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~ 365 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYFPE---QKRNTIFFSPHE----RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYC 365 (561)
T ss_pred cccccceeecccccc-eEEecCC---cccccccccCcc----cEEEEecCCccccceEEeccCCceEEEEEeecCCceEe
Confidence 6789999999887 4444432 234556777876 4443322 67788876654433 4444444445
Q ss_pred EEec-cceeee--c----ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEE
Q 002405 398 IFSF-GKCCLN--R----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (927)
Q Consensus 398 ~~~~-~~~~~s--~----s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~a 470 (927)
.+++ ++...+ . -.|..+++|++....- + ..+.+.|.|.|++.-+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------------f-----el~~~~W~p~~~~~tts 417 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------------F-----ELTNITWDPSGQYVTTS 417 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCchh-----------------------h-----hhhhccccCCcccceee
Confidence 5555 333222 1 2356667777532111 1 34557888888888776
Q ss_pred eCCc
Q 002405 471 GLHG 474 (927)
Q Consensus 471 g~dg 474 (927)
+.+.
T Consensus 418 Ss~~ 421 (561)
T COG5354 418 SSCP 421 (561)
T ss_pred ccCC
Confidence 6544
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.9e-07 Score=100.18 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=123.3
Q ss_pred cCCccEEEEEecCcEEEEEEEEecCceeecCCC-CCCC---ccceeeeEEeecccccccc-cceEEEeeccCCeEEEEec
Q 002405 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGK-QPSG---LFFIKISLVLNEQLPFAEK-GLSVSNIVSDNKHMLLGLS 150 (927)
Q Consensus 76 spDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~l~v~~~ 150 (927)
.|-..++|..++||++++|+...+....-+... ...+ ...|.+ ....+. .+.. -..+.-.+.+...++.|+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L--~~~~s~-~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGL--SADYSP-MKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEE--Eeccch-HHHHhHHHHhhccCCceEEEeecC
Confidence 355678999999999999999865543322211 1111 112332 111110 0000 0001112344567888999
Q ss_pred CCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCC
Q 002405 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (927)
Q Consensus 151 dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG 230 (927)
.|.|..++-.+...... .....|.+.+.++.++.....+-....|+
T Consensus 79 ~g~v~~ys~~~g~it~~----------------------------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~ 124 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAK----------------------------------LSTDKHYGNVNEILDAQRLGCIYSVGADL 124 (541)
T ss_pred CccEEEEEecCCeEEEE----------------------------------EecCCCCCcceeeecccccCceEecCCce
Confidence 99998877543221111 11134556666665544333333333344
Q ss_pred cEEEEeeecCccceeeecccc---eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC
Q 002405 231 QLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (927)
Q Consensus 231 ~~~~~~~~d~~~~~w~~~~~~---~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (927)
+ +..|+..... .|.+....+ ++.++|||+.+++|+ ++|++||+++ .+.+.+|.+ |
T Consensus 125 ~----------v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~-kevv~~ftg--------h 183 (541)
T KOG4547|consen 125 K----------VVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIET-KEVVITFTG--------H 183 (541)
T ss_pred e----------EEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccC-ceEEEEecC--------C
Confidence 4 4444443321 123444555 899999999999887 6899999998 888999999 9
Q ss_pred CCCeeEEEECCC-----CCE-EEEEEcCCcEEEEEccC
Q 002405 307 TGPVSCIAWTPD-----NSA-FAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 307 ~~~V~~l~~spd-----g~~-Lasg~~Dg~v~vW~~~~ 338 (927)
.++|++++|.-+ |.+ |.++..+..+.+|-+..
T Consensus 184 ~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 184 GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999887 554 45556677889997754
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=1.1e-06 Score=90.12 Aligned_cols=258 Identities=10% Similarity=0.057 Sum_probs=134.3
Q ss_pred cccccEEEEcCCccEEEEEecCcEEEEEEEEecCcee-----ecCCCCCCCccceeeeEEeecccccccccceEEEeec-
Q 002405 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-----QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS- 140 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~- 140 (927)
..-+.+|.|..+|.+||+|..+|.+.+|.-+...+.- .+..|.++--.+.++ ...+. ...|.-+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl--eieEK------inkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL--EIEEK------INKIRWLDDG 96 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh--hhhhh------hhhceecCCC
Confidence 3445789999999999999999999999754333210 011222211111111 11111 112222222
Q ss_pred cCCeEEEEecCCcEEEEecCCcccc--ceeec--ccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 141 DNKHMLLGLSDGSLYSISWKGEFYG--AFELV--HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 141 ~~~~l~v~~~dg~i~~~~w~~~~~~--~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
+...+++.+.|.++..|........ .+.+. ..+.....++..-..... +... ...+++....|...|.+|.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~-~~ve---a~prRv~aNaHtyhiNSIS- 171 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD-LEVE---ASPRRVYANAHTYHINSIS- 171 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc-ceee---eeeeeeccccceeEeeeee-
Confidence 2367888888999988754322111 11100 011111111110000000 0000 0011122233444455544
Q ss_pred ccCcceEEEEEeCCcEEEEeeecCccceeeecccce-e-----c-----CCCCeE-EEEEcCC-CcEEEEEecCCeEEEE
Q 002405 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E-----L-----GSGDAV-CASIAPE-QQILAVGTRRGVVELY 283 (927)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~-~-----~-----~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vw 283 (927)
+.+|+..+++ ++|-.+.+|++.-... . + .-+..+ +..|+|. ..+++-.+.-|+||+-
T Consensus 172 ---------~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 172 ---------VNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ---------ecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 5788887774 4566788887653211 1 1 122345 7889995 5678888889999999
Q ss_pred eccCCCcce---EEEeeecCCCC----CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc-cCCeeEEEeccc
Q 002405 284 DLAESASLI---RTVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI 348 (927)
Q Consensus 284 d~~~~~~~~---~~l~~~~~~~~----~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~-~~~~~~~~l~~~ 348 (927)
|++...-+- ..+....-+.+ .+-...|.++.||++|+++++-.. -+|++||+ ...+++.+..-|
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 998521111 11111111111 012356889999999999998765 79999999 444555555544
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=3.9e-06 Score=96.51 Aligned_cols=123 Identities=14% Similarity=0.189 Sum_probs=66.6
Q ss_pred EEEeCCcEEEEeee-cCcccee--eecccce--ecCCCCeE-EEEEcCCCcEEEEEec-CCeEEE--EeccCCCcceEEE
Q 002405 225 VLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGDAV-CASIAPEQQILAVGTR-RGVVEL--YDLAESASLIRTV 295 (927)
Q Consensus 225 ~~s~dG~~~~~~~~-d~~~~~w--~~~~~~~--~~~h~~~v-~v~~sp~~~~la~g~~-Dg~V~v--wd~~~~~~~~~~l 295 (927)
.++|||+.++..+. ++...+| +...++. +....... ..+|+|||+.|+..+. ++..+| +|+++ +. ...+
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~l 389 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVL 389 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEc
Confidence 45778876665553 3333443 3333221 11112222 5789999999887665 444455 55544 32 3333
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc---EEEEEccCCeeEEEeccccccceecceecC
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~---v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
.. . ......+|+|||+.|+..+.+++ +.+++..+. ....+..+ ...+..++|+|
T Consensus 390 t~--------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 390 TS--------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred cC--------C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC-CCCcCCCccCC
Confidence 22 1 11223479999998877665432 666777554 44445433 34456666665
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1.8e-06 Score=95.15 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=108.6
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
-..+|-|...|.|.+|++.. ++...++... .|.+.|+++.|+.+-.+|-+++.|+.+..|+...+..++....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~-g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAG-GEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ceEEEeecCCccEEEEEecC-CeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence 34788899999999999987 7777777642 3999999999999999999999999999999999998888887
Q ss_pred ccccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEEEcCCcceEEEEec
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (927)
. ...+.++..+||+ ..+.+++ ++++|+.++.+++..+.||.+.|..++|
T Consensus 143 ~-~~~~~sl~is~D~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 143 Q-KPLVSSLCISPDG----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred C-CCccceEEEcCCC----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 6 6789999999998 7888777 9999999999999999999999977776
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=3.1e-07 Score=106.93 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=105.8
Q ss_pred EEeCCcEEEEeeecCccceeeecc---cceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceE-EEeeecC
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIK---IDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDW 300 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~---~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~-~l~~~~~ 300 (927)
.+++--++++++--+.+-+|.... +....||.+.+ .+.++-||+++|+.|.|.++|+|++++ .+... +.-+
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~~~~fg--- 216 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLGCTGFG--- 216 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccCccccc---
Confidence 344555666666666677776542 22348999999 999999999999999999999999998 43332 3333
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEE
Q 002405 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~ 377 (927)
|++.|+.+.|.|+ .++|+++|.+.++|+..+..+ ..+.+|-...+..++.+++. ....+++ ++++
T Consensus 217 -----HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 217 -----HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKL 284 (967)
T ss_pred -----ccceeEEEEeccc--eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEEcCCc----eEEEeeccCcchhh
Confidence 9999999999998 999999999999998876544 47777755667778877765 4444544 7777
Q ss_pred EcCCC
Q 002405 378 WDEYG 382 (927)
Q Consensus 378 W~~~~ 382 (927)
|+..+
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 77643
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.63 E-value=1.6e-05 Score=86.41 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=60.6
Q ss_pred EEEEcCCCcEEEEEe----------cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEE-cC
Q 002405 261 CASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KS 328 (927)
Q Consensus 261 ~v~~sp~~~~la~g~----------~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~-~D 328 (927)
-++++|+++.+-+.. ..+.|.++|..+ .+.+..+.. ...+..+++||||+ +|.+.. .+
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCC
Confidence 499999998877743 224799999887 666666664 34689999999999 888776 56
Q ss_pred CcEEEEEccCCeeEEEecc
Q 002405 329 RGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~ 347 (927)
+.|.+.|+.+++.+.++..
T Consensus 322 ~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 322 KTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CcEEEEECcCCeEEeeecc
Confidence 8899999999988888743
No 245
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.9e-05 Score=87.71 Aligned_cols=464 Identities=17% Similarity=0.176 Sum_probs=228.9
Q ss_pred CCceeeeCCCCCCCCCceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhh-cccccEEEEcCCc-----
Q 002405 6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQR-EGENLQAVWSPDT----- 79 (927)
Q Consensus 6 g~p~~~~~~~~~~~~~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~-~G~~~~v~wspDg----- 79 (927)
-||+.++.... ++.-..+..+|.| ++|-++.+.|.+-|.. ....+. +++. ...++.|.|+|--
T Consensus 4 ~s~~tlpG~l~--~sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iq-------sie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 4 VSDHTLPGPLS--RSNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQ-------SIELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccCCCCCC--cccccccccCccc-eEEEecCceEEEEehh-hhhhhh-------ccccCccceeEEEeccCCCchhc
Confidence 46666654321 1233446677777 8899988899998886 222221 2332 2456789998732
Q ss_pred -------cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEEEecC
Q 002405 80 -------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSD 151 (927)
Q Consensus 80 -------~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~d 151 (927)
-.||++.-.|.|.+||.........+..+..+ +.++.+... ..+. +.+++-...
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~---~qdl~W~~~---------------rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDS---VQDLCWVPA---------------RDDSRDVLLAIHGS 134 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcc---hhheeeeec---------------cCcchheeEEecCC
Confidence 25777777899999998765543333222211 111111100 0112 333333444
Q ss_pred CcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC-CCccEEEEEEccCc-ceEEEEEeC
Q 002405 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP-ISSAIIWLELCLPM-RLLFVLYSN 229 (927)
Q Consensus 152 g~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~-~~~~~~s~d 229 (927)
.++.. |+...+..+ |... ......++.++|.. ..++..+..
T Consensus 135 s~lvL--wntdtG~k~-----------------------------------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 135 STLVL--WNTDTGEKF-----------------------------------WKYDYSHEILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred cEEEE--EEccCCcee-----------------------------------eccccCCcceeeeeeCCCCcceEEEEccC
Confidence 45544 433332221 1111 12233445666654 455555555
Q ss_pred CcEEEEee-----ecCccceeeecccc-------ee--cC--CC----Ce---E---EEEEcCCCcEEEEEecCCeEEEE
Q 002405 230 GQLMSCSV-----SKKGLKLAEFIKID-------KE--LG--SG----DA---V---CASIAPEQQILAVGTRRGVVELY 283 (927)
Q Consensus 230 G~~~~~~~-----~d~~~~~w~~~~~~-------~~--~~--h~----~~---v---~v~~sp~~~~la~g~~Dg~V~vw 283 (927)
|..+.+.. .++..+...+.+.. .. .+ ++ .+ + ..+|+|..+-+....-...+.|+
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~ 257 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF 257 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence 65554432 12222222221110 00 00 00 01 1 34789987777777778889999
Q ss_pred eccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCcEEEEEccCC----------------eeEEEe
Q 002405 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC----------------RLMSTI 345 (927)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~Dg~v~vW~~~~~----------------~~~~~l 345 (927)
|++- ..++.+... ..+.+.-+.|-||++ .|...-.||.+.+|--... +....+
T Consensus 258 dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~v 328 (1062)
T KOG1912|consen 258 DLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVV 328 (1062)
T ss_pred cchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEE
Confidence 9986 666766666 677888899999876 7888999999999965331 111111
Q ss_pred ccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCc-ceEEEEec-cc-------eeeecccCCCeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GK-------CCLNRGVSGMTYA 416 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~-~~v~~~~~-~~-------~~~s~s~d~~~~~ 416 (927)
+.-..-....-+..|..++....+.+.+...+|...++++-....... .-..-|+| +. .+.+-|.||...
T Consensus 329 r~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~- 407 (1062)
T KOG1912|consen 329 RPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHS- 407 (1062)
T ss_pred eechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCC-
Confidence 110000111111223322122344555577788887665533222111 11133333 11 122222232100
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC-------CEEEEEeCCceE-EEEccCCcEEee
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-------MFLAVAGLHGLI-LYDIRQKKWRVF 488 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG-------~~la~ag~dg~i-~wd~~s~~w~~f 488 (927)
.|. ...+ .+ ..|+-.+ +.-.|-| ..+|+|+..|++ ++|+.++...
T Consensus 408 ----sGs---~~~~--------~~--p~p~~t~--------~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~-- 460 (1062)
T KOG1912|consen 408 ----SGS---TCVR--------MR--PMPELTK--------VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA-- 460 (1062)
T ss_pred ----CCc---eeee--------cc--cCcccce--------eecCCCCCccceeeeeEEeecCCceEEEEEecchhhh--
Confidence 000 0000 00 0111100 1111211 478999999999 9999887521
Q ss_pred CCccceeeeEEEEEEeeCCEE-EEEEeecCC---CeE--EEEEeeCC-CCCccceeEEEe--cCCccEEEEccCCEEEEE
Q 002405 489 GDITQEQKIQSKGLLWLGKII-VVCNYIDSS---NTY--ELLFYPRY-HLDQSSLLCRKS--LLAKPIVMDVYEDYILVT 559 (927)
Q Consensus 489 ~~~~~e~~~~v~~~~W~~~~l-i~~~~~~~~---~~~--~l~l~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~l~v~ 559 (927)
....-+.-.|.|+-|.|+.- +...+..-. +.+ ++.+-... .+.......+.. -|-..+..+..+.+|++.
T Consensus 461 -~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~ 539 (1062)
T KOG1912|consen 461 -ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAIL 539 (1062)
T ss_pred -hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEE
Confidence 11112223477999998754 444443211 111 22222221 232222211111 122234557789999999
Q ss_pred EcCCeEEEEEEEEe
Q 002405 560 YRPFDVHIFHVKLF 573 (927)
Q Consensus 560 ~~d~~i~l~~~~~~ 573 (927)
+.+.-+.+|+++..
T Consensus 540 Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 540 FRREPLEIWDLKTL 553 (1062)
T ss_pred ecccchHHHhhccc
Confidence 99999999998643
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=8.2e-07 Score=95.09 Aligned_cols=286 Identities=10% Similarity=0.100 Sum_probs=168.9
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeec-CCCCCCCccceeeeEEeecccccccccceEEEeeccCCe
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI-GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 144 (927)
++|-+..|.|...|..|++++.|..+.+|+......++.+ ++|.... .....++. ++...
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nv--------fQaKFiP~-----------s~d~t 201 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNV--------FQAKFIPF-----------SGDRT 201 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccch--------hhhhccCC-----------CCCcC
Confidence 4588889999999999999999999999998766654433 3332110 00001111 12234
Q ss_pred EEEEecCCcEEEEecCCccc--cceeecccCCCCcccccccccCCCCCccccCCCceecccccC--CCccEEEEEEccC-
Q 002405 145 MLLGLSDGSLYSISWKGEFY--GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP- 219 (927)
Q Consensus 145 l~v~~~dg~i~~~~w~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~- 219 (927)
++.++.||.++.-....... ....+..+..++.++...|+++.. +.+.++++....+.+.. ....+.+-.....
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~-f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKP-FLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred ceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCc-ccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 66667788776544332211 122233344556666666665554 33333322211111110 1111122222222
Q ss_pred --cceEEEEEeCCc-EEEEeeecCccceeeeccccee----------------cCCCCeEEEEEcCCCcEEEEEecCCeE
Q 002405 220 --MRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----------------LGSGDAVCASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 220 --~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~----------------~~h~~~v~v~~sp~~~~la~g~~Dg~V 280 (927)
.-+.++..|-.. .++++..|.-.+++|....... ..+...+|+++++++.-|.+...|-.|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 113344445444 5666666666677765432211 112233399999887766666888899
Q ss_pred EEEeccCC-C----------cceEE-EeeecCCCCCCCC--CCeeEEEE-CCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 281 ELYDLAES-A----------SLIRT-VSLYDWGYSMDDT--GPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 281 ~vwd~~~~-~----------~~~~~-l~~~~~~~~~~h~--~~V~~l~~-spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
.++.-... + ..++. .++ |. ..|..+-| -|...++++|++-|.|.+|+-.+++++.-+
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKG--------HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKG--------HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcc--------cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 99964331 1 11111 334 64 34777765 688999999999999999999999988888
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCCce
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~ 384 (927)
++. ..-|+++.-+|.. ..|++.+ .+++|.+.+.+
T Consensus 433 egD-r~VVNCLEpHP~~----PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 433 EGD-RHVVNCLEPHPHL----PVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hcc-cceEeccCCCCCC----chhhccCCccceeeecCCccc
Confidence 875 3478999888887 6676655 89999986544
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.1e-06 Score=89.87 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=109.1
Q ss_pred EEEEeeec--Cccceeeeccccee----------cCCCCeE---EEEEcCC--CcEEEEEecCCeEEEEeccCCCcceEE
Q 002405 232 LMSCSVSK--KGLKLAEFIKIDKE----------LGSGDAV---CASIAPE--QQILAVGTRRGVVELYDLAESASLIRT 294 (927)
Q Consensus 232 ~~~~~~~d--~~~~~w~~~~~~~~----------~~h~~~v---~v~~sp~--~~~la~g~~Dg~V~vwd~~~~~~~~~~ 294 (927)
++++|+.. ..+++||....++. .+-.-+| .+.|-|. ...+|+++.-+.||+||.....+++.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 44555555 56778887655332 1222233 7788887 889999999999999999875667777
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE-eccccccceecceecCCCCCCcccccccc
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
+.. -..+++++...|+|+.+.+|..-|.+..+|..++++... +.+- .++++++..+|.. .++++++
T Consensus 243 fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~G 309 (412)
T KOG3881|consen 243 FDF--------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCG 309 (412)
T ss_pred ecc--------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeec
Confidence 766 578899999999999999999999999999998876654 6665 6788888888887 7777776
Q ss_pred ---eeEEEcCCCceEEE
Q 002405 374 ---SMMQWDEYGYRLYA 387 (927)
Q Consensus 374 ---~~~~W~~~~~~l~~ 387 (927)
.+++.|..+.+++.
T Consensus 310 LDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cceeEEEeecccchhhh
Confidence 67778877755433
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=7.4e-07 Score=103.89 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=133.2
Q ss_pred EEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCC
Q 002405 73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG 152 (927)
Q Consensus 73 v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg 152 (927)
..+.-+.+.+++++.++.+.+|+...+.-.... ...+. .+... ..+.-++.+.-+++.|+.-|
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er-------~~l~~-------~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDER-------CTLYS-------SLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhc---CCCce-------EEEEe-------EEEEeccCcEEEEEeccccc
Confidence 444456678888898898999987633211000 00000 00000 01111222334567777788
Q ss_pred cEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcE
Q 002405 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (927)
Q Consensus 153 ~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~ 232 (927)
.+..|.|.... .. ..+.+|.+.|-++.+ +.||++
T Consensus 156 ~iivW~~~~dn-~p-----------------------------------~~l~GHeG~iF~i~~----------s~dg~~ 189 (967)
T KOG0974|consen 156 EIIVWKPHEDN-KP-----------------------------------IRLKGHEGSIFSIVT----------SLDGRY 189 (967)
T ss_pred cEEEEeccccC-Cc-----------------------------------ceecccCCceEEEEE----------ccCCcE
Confidence 88877765211 11 123567777877665 889999
Q ss_pred EEEeeecCccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCC
Q 002405 233 MSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (927)
Q Consensus 233 ~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (927)
+++.++|.++++|+..+.+.. .+|+..+ .+.|.|+ .++|++.|.+.++|+.+. ..+.++.+ |.
T Consensus 190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~--~~l~~y~~--------h~ 257 (967)
T KOG0974|consen 190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG--TQLEVYDE--------HS 257 (967)
T ss_pred EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc--ceehhhhh--------hh
Confidence 999999999999998876544 5899999 9999999 999999999999998763 34445555 65
Q ss_pred -CCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 308 -GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 308 -~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
+.++.++..++.....|++.|+++++|+..+.
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 56899999999999999999999999998654
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=0.00023 Score=74.70 Aligned_cols=212 Identities=17% Similarity=0.262 Sum_probs=116.2
Q ss_pred EEEEEcCCCcEEEEEec-CCeEEEEeccCCCcceEEEeeecCCCCCCCCCC----------eeEEEECCCCCEEEEEEcC
Q 002405 260 VCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGP----------VSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~-Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~----------V~~l~~spdg~~Lasg~~D 328 (927)
+.++++++|+++.++.- .|.|.++.++..|.+........ |+++ +.+..++|||++|++..--
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------HTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------cCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 68999999999988764 47999999977554443322211 4444 8899999999999987641
Q ss_pred -CcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeee
Q 002405 329 -RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLN 407 (927)
Q Consensus 329 -g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s 407 (927)
-.|.++++..+.+...-... -+.+ +|...+++.+++.-...+.+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~----------v~~G--------~GPRHi~FHpn~k~aY~v~E----------------- 210 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAE----------VKPG--------AGPRHIVFHPNGKYAYLVNE----------------- 210 (346)
T ss_pred CceEEEEEcccCccccccccc----------cCCC--------CCcceEEEcCCCcEEEEEec-----------------
Confidence 36889998766543211100 0111 12233333333222211111
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCc-eE-EEEc--cCC
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG-LI-LYDI--RQK 483 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg-~i-~wd~--~s~ 483 (927)
.++++.+|.......++.- ......+|..|.+.+| ...+.+||||++|.++.+.- .+ +|.+ .++
T Consensus 211 --L~stV~v~~y~~~~g~~~~---------lQ~i~tlP~dF~g~~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 211 --LNSTVDVLEYNPAVGKFEE---------LQTIDTLPEDFTGTNW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred --cCCEEEEEEEcCCCceEEE---------eeeeccCccccCCCCc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 1222333332221111100 0111224777777665 46689999999999876533 23 6655 345
Q ss_pred cEEeeCCccceeeeEEEE--EEeeCCEEEEEEeecCCCeEEEEEeeCC
Q 002405 484 KWRVFGDITQEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 484 ~w~~f~~~~~e~~~~v~~--~~W~~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
+...++....|.. .-++ +.-.+++|++++- ..+.+.+|.++
T Consensus 279 ~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa~q----~sd~i~vf~~d 321 (346)
T COG2706 279 KLELVGITPTEGQ-FPRDFNINPSGRFLIAANQ----KSDNITVFERD 321 (346)
T ss_pred EEEEEEEeccCCc-CCccceeCCCCCEEEEEcc----CCCcEEEEEEc
Confidence 5444333222221 1122 3335788888743 33568999885
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=5.2e-06 Score=90.73 Aligned_cols=238 Identities=18% Similarity=0.157 Sum_probs=145.7
Q ss_pred cCCCCeE-EEEEcCCCcE-EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC--CCCeeEEEECCCCCEEEEEEcCC
Q 002405 254 LGSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD--TGPVSCIAWTPDNSAFAVGWKSR 329 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~-la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h--~~~V~~l~~spdg~~Lasg~~Dg 329 (927)
.++..+. .+..+|||++ +|+|.---.|++||+.. - .-++.. | ...|.-.-.|-|-..++--..|+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-L--SLKFER--------hlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-L--SLKFER--------HLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEccc-c--eeeeee--------cccccceeEEEeccchhhheEeecCc
Confidence 3566666 9999999997 67888888999999975 3 233333 3 34566666666766666667788
Q ss_pred cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec---cceee
Q 002405 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (927)
+|-+-...|..--..+.-. -..+.++... |..-...+|..+.-.+++.|+.+..+....+.+.+++. -..++
T Consensus 117 ~IefHak~G~hy~~RIP~~----GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 117 TIEFHAKYGRHYRTRIPKF----GRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred eeeehhhcCeeeeeecCcC----CccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence 8877665443211111111 1112222111 21122334446666777888776666554456655544 45667
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC-----CceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN-----WPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-----~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
.|..+|.+..||-..... +- .+.++.....|. -.|+++.|+.||-.+++|+..|.+ +||+
T Consensus 192 ~Gt~~g~VEfwDpR~ksr-v~-------------~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSR-VG-------------TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ecccCceEEEecchhhhh-he-------------eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 778899999999653221 10 011122212222 238999999999999999999999 9999
Q ss_pred cCCcEEeeCCccceeeeEEEEEEee----CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 481 RQKKWRVFGDITQEQKIQSKGLLWL----GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 481 ~s~~w~~f~~~~~e~~~~v~~~~W~----~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
.+.+=-... .|..++.+..+.|. ++.++++ ...-+++|...
T Consensus 258 Ra~~pl~~k--dh~~e~pi~~l~~~~~~~q~~v~S~------Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 258 RASKPLLVK--DHGYELPIKKLDWQDTDQQNKVVSM------DKRILKIWDEC 302 (703)
T ss_pred ccCCceeec--ccCCccceeeecccccCCCceEEec------chHHhhhcccc
Confidence 987633322 35555677888995 2344444 33567888773
No 251
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=3.4e-07 Score=97.93 Aligned_cols=285 Identities=10% Similarity=0.091 Sum_probs=169.9
Q ss_pred ccccceEEEeec--cCCeEEEEecCCcEEEEecCCccccceee-cccCCCCcccccccccCCCCCccccCCCceeccccc
Q 002405 129 AEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFEL-VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF 205 (927)
Q Consensus 129 ~~~~~~v~~i~~--~~~~l~v~~~dg~i~~~~w~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 205 (927)
..+.|.|..+.. .++.++.|+.|-.+.+|+|...... ... ..+...+.....+|++.+..+.+.+.+++.....+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 344555555443 4678888888999999999754321 111 111122333456777777777766655544432222
Q ss_pred CCCccE--EEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeecccc------eecCCCC---eE-EEEEcCCCc-EE
Q 002405 206 PISSAI--IWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID------KELGSGD---AV-CASIAPEQQ-IL 271 (927)
Q Consensus 206 ~~~~~i--~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~------~~~~h~~---~v-~v~~sp~~~-~l 271 (927)
..+... ..+.-+.....-+++-|+.. -+.+++.|+.+...|..... +...+.. .. .++.+|... .+
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 111111 11111111112233344443 45566667666655544221 1123333 34 889999776 89
Q ss_pred EEEecCCeEEEEeccCCCc-----ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC--C-----
Q 002405 272 AVGTRRGVVELYDLAESAS-----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG--C----- 339 (927)
Q Consensus 272 a~g~~Dg~V~vwd~~~~~~-----~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~--~----- 339 (927)
|+|+.|.-+|+||.....+ .+.++-..... . ...-.|++++||.+|.-|.+++.|-.|.++.-.- |
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-E-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCcccc-c-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 9999999999999864211 11111110000 0 1234589999999998888888888999995421 1
Q ss_pred -----eeE-EEeccccc-cceecce-ecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---ccee
Q 002405 340 -----RLM-STIRQISL-SSISSPI-VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (927)
Q Consensus 340 -----~~~-~~l~~~~~-~~v~s~~-~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (927)
..+ +..+||-. ..|..+- |-|.. ++++||+ .+.+|+-.++++++..++...-|.++.+ --.+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 111 22566622 1244444 34555 8899998 8999999999999988876665677776 5578
Q ss_pred eecccCCCeeeeeee
Q 002405 406 LNRGVSGMTYARQVI 420 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~ 420 (927)
++.+.|..|++|.-.
T Consensus 452 AsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPL 466 (559)
T ss_pred hccCCccceeeecCC
Confidence 899999999999854
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.58 E-value=3.9e-06 Score=86.29 Aligned_cols=287 Identities=14% Similarity=0.148 Sum_probs=156.1
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEeecCCcee----EEEEE------eeChHhhhhcccccEEEEcCCcc--EEEEEecC
Q 002405 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKV----RLGKY------KRDSESVQREGENLQAVWSPDTK--LIAVVTSS 88 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~----~l~~~------~r~~~sl~~~G~~~~v~wspDg~--~Lav~t~d 88 (927)
...|-|..+|.+||++ .++.|.++.-.+... ..+.+ -.-.++++....+..+.|-+++. ...+.|.|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 4558899999999999 477888886542221 01111 01123455556778999999886 46668889
Q ss_pred cEEEEEEEEecCcee---ecC--CCC--CCCccceee-------eEEeecccccccccceEEEeeccC-CeEEEEecCCc
Q 002405 89 LYLHIFKVQITEKSI---QIG--GKQ--PSGLFFIKI-------SLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGS 153 (927)
Q Consensus 89 g~l~i~~l~~~~~~~---~~~--~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~dg~ 153 (927)
.++++|.+.....+. ..+ +.. ...+.++.+ +..+ .++.-..+.-.|.+++.+. .+.++..+|-.
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p-rRv~aNaHtyhiNSIS~NsD~Et~lSADdLR 186 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP-RRVYANAHTYHINSISVNSDKETFLSADDLR 186 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee-eeeccccceeEeeeeeecCccceEeecccee
Confidence 999999986433221 000 000 000111110 1111 1122233444566676655 34556666666
Q ss_pred EEEEecCCcc-ccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcc-eEEEEEeCCc
Q 002405 154 LYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQ 231 (927)
Q Consensus 154 i~~~~w~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~~~~s~dG~ 231 (927)
|.+ |..+. .+.+.+. ..-+.+ ..+-..-|++.+|+|... .++.-++.|.
T Consensus 187 INL--Wnlei~d~sFnIV------------DIKP~n---------------mEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 187 INL--WNLEIIDQSFNIV------------DIKPAN---------------MEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred eee--ccccccCCceeEE------------EccccC---------------HHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 766 44333 2222210 000000 001123466667888764 4444455566
Q ss_pred EEEEeee-----cCccceeeec-cccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 232 LMSCSVS-----KKGLKLAEFI-KIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 232 ~~~~~~~-----d~~~~~w~~~-~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
+-++... |..-++.... .+... .+.-..+ .+.|+++|+++++-.- -+|++||+....+++.+....+.-
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 5554433 2222222111 11000 1223456 8899999999997432 699999997656777666652210
Q ss_pred CC----CCCCCCe---eEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 302 YS----MDDTGPV---SCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 302 ~~----~~h~~~V---~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
.+ .-....| ..++||-++.++++|+.....+++++..|
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 00 0001122 46899999999999999999999997544
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=9.9e-06 Score=92.47 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=76.9
Q ss_pred EEEeCCcEEEEeee-cCccceeeec----c--cceecCCCCeE-EEEEcCCCcEEEEEecC---CeEEEEeccCCCcceE
Q 002405 225 VLYSNGQLMSCSVS-KKGLKLAEFI----K--IDKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIR 293 (927)
Q Consensus 225 ~~s~dG~~~~~~~~-d~~~~~w~~~----~--~~~~~~h~~~v-~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~~~ 293 (927)
.++|||+.++..++ ++...+|... . ...+..+...+ ..+|||||+.||..+.+ ..|.+||+.+ ++. .
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~ 364 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-Y 364 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-E
Confidence 45888887666553 4555555432 1 11223333444 88999999999876653 3688999876 433 3
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---CcEEEEEccCCeeEEEeccccccceecceecCC
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~ 361 (927)
.+.. ..+.+...+|+|||+.|+....+ ..+.+|++.++....-... ...+..++|+|.
T Consensus 365 ~Lt~--------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 365 QLTT--------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EccC--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 3332 23456779999999988754432 4578888877654333222 334556666664
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.57 E-value=0.00022 Score=79.27 Aligned_cols=271 Identities=12% Similarity=0.129 Sum_probs=135.3
Q ss_pred eEEEEEecCeEEEEEc-----cCeEEEeecCCceeEEEEEeeChHhhhhcccc-cEEEEcCCccEEEEEe-cCcEEEEEE
Q 002405 23 QIIYFKVNNGLLLIAS-----PCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVWSPDTKLIAVVT-SSLYLHIFK 95 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~-----~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~-~~v~wspDg~~Lav~t-~dg~l~i~~ 95 (927)
.-++++|++++|-++. .+.|..|+++.....+....+... .|.. ..++.+||+++|+++. .+|.+.+|+
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~----~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS----GGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE----SSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc----CCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 3478999988766663 347888887522123333333211 2332 4699999999999988 488999999
Q ss_pred EEecCceeecCCCCCCCccceeeeEEeecccc--cccccceEEEeeccCCeEEEEe-cCCcEEEEecCCccccceeeccc
Q 002405 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLP--FAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHS 172 (927)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~l~v~~-~dg~i~~~~w~~~~~~~~~~~~~ 172 (927)
+......... .........+... -......-..+.++++.+++.. ....|.+++++..... +..
T Consensus 116 l~~~g~l~~~---------~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~--- 182 (345)
T PF10282_consen 116 LDDDGSLGEV---------VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTP--- 182 (345)
T ss_dssp ECTTSEEEEE---------EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEE---
T ss_pred ccCCccccee---------eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEE---
Confidence 9753211000 0000000000000 0011111134567777777753 3457888888754421 110
Q ss_pred CCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeC-CcEEEEeee--cCccceeeecc
Q 002405 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVS--KKGLKLAEFIK 249 (927)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~--d~~~~~w~~~~ 249 (927)
.. ..-......-+.+.|+|....+.....- +.+.+.... ++.++..+...
T Consensus 183 ------~~---------------------~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 183 ------VD---------------------SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ------EE---------------------EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ------ee---------------------ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 00 0011233445555554443322222221 112222222 22222211111
Q ss_pred c--ceecCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 250 I--DKELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 250 ~--~~~~~h~~~v~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
. ....+...+-.++++|||++|.++. .+++|.+|+++.....+........ ....-+.++++|||++|+++.
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEEe
Confidence 0 0011222344899999999876654 5679999999542333333222110 122358999999999999887
Q ss_pred c-CCcEEEEEc--cCCeeE
Q 002405 327 K-SRGLTVWSV--SGCRLM 342 (927)
Q Consensus 327 ~-Dg~v~vW~~--~~~~~~ 342 (927)
. ++.|.+|++ .+|.+.
T Consensus 311 ~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp TTTTEEEEEEEETTTTEEE
T ss_pred cCCCeEEEEEEeCCCCcEE
Confidence 5 578999977 466544
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.55 E-value=4.3e-06 Score=95.97 Aligned_cols=183 Identities=18% Similarity=0.142 Sum_probs=106.1
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEE-EEcC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las-g~~D 328 (927)
..+...+ +.+|+|||+.||.++.+ ..|.+||+.+ +.. ..+.. +.+.+.+++|+|||+.|+. .+.+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~--------~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVAS--------FPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeec--------CCCCccceEECCCCCEEEEEECCC
Confidence 4455556 88999999999987754 4799999976 433 23333 5566778999999997764 4444
Q ss_pred C--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCCceEEEEEcC-CcceEEEE
Q 002405 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SSERVLIF 399 (927)
Q Consensus 329 g--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~-~~~~v~~~ 399 (927)
+ .+.+|++.++.. ..+..+ ......+.|+|++ ..++..+ .+..++..+++....... ....-..+
T Consensus 256 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW 329 (417)
T ss_pred CCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence 4 588889877643 333333 3334567888887 4443211 455666666554332211 11111344
Q ss_pred ec-cceeeecccCC---CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCc
Q 002405 400 SF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (927)
Q Consensus 400 ~~-~~~~~s~s~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg 474 (927)
++ ++.++.++.++ .+.++++..+..+ . +.. .......+|+|||++|+.++.++
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------------~--l~~-----~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER---------------V--LTD-----TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeE---------------E--ccC-----CCCCCCceECCCCCEEEEEEeCC
Confidence 55 55555544443 2333333221110 0 111 11123458999999999887765
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.49 E-value=1.8e-06 Score=88.81 Aligned_cols=201 Identities=15% Similarity=0.188 Sum_probs=129.4
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.||.+.+ ....-|...-+.+.+.|.++|||--.+.++..+.+.. .-..+++++++.++.+.|.+|-++|++.
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-------hCCCCceEeeeeccceEEEEEEecceEE
Confidence 6888888 6667787778999999999999976653444333322 1356789999999999999999999999
Q ss_pred EEEccC---CeeEEEeccccccceecceecCCCCCCcccccccc--eeEEE-----------------------------
Q 002405 333 VWSVSG---CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQW----------------------------- 378 (927)
Q Consensus 333 vW~~~~---~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W----------------------------- 378 (927)
-+.+.. ....-.....|...+..+.|+-.. +.+.+.+ +.+.|
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~----e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH----EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCc----eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 887732 111111111114445555444322 1111111 22222
Q ss_pred -------------cCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 379 -------------DEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 379 -------------~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
...+-.++....+|.+.++.+.+ .+.+.++..|..+.+|++.-...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g------------------ 231 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG------------------ 231 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc------------------
Confidence 12222334445566666666655 34566777777777777643322
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
......+|+..|+.++.-+--+.+.+++.||.+ +|+.+..+
T Consensus 232 -~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 232 -TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 123455899999999888888999999999999 99987554
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.2e-05 Score=91.67 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=57.7
Q ss_pred EEEEeCCcE---EEEeeecCcccee--eecccc--eecCCCCeE-EEEEcCCCcEEEEEec-CC----eEEEEeccCC-C
Q 002405 224 FVLYSNGQL---MSCSVSKKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQILAVGTR-RG----VVELYDLAES-A 289 (927)
Q Consensus 224 ~~~s~dG~~---~~~~~~d~~~~~w--~~~~~~--~~~~h~~~v-~v~~sp~~~~la~g~~-Dg----~V~vwd~~~~-~ 289 (927)
-.++|||+. +++...++...+| +...++ .+....... ..+|||||+.||..+. +| .+..|++... +
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 356888863 2233344444444 333332 222222333 6799999999887653 23 3444666541 1
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEc
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV 336 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~ 336 (927)
.....+.. ++.+.....+|||||+.|+..+ .+|...+|.+
T Consensus 270 g~~~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 270 GKPRRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CcceEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 12222222 0223446789999999888766 4566666654
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=1.5e-05 Score=91.88 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=73.9
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEE-EEcC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las-g~~D 328 (927)
..+...+ ..+|||||+.||..+.+ ..|.+|++++ +.. ..+.. ..+.+...+|||||+.|+. .+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITN--------FEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccC--------CCCCcCCeEECCCCCEEEEEEccC
Confidence 3455566 88999999999876644 3688889876 432 22322 3445567899999998874 4455
Q ss_pred C--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCCceE
Q 002405 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (927)
Q Consensus 329 g--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l 385 (927)
| .|.+||+.++... .+..+ .....++.|+|++ ..++..+ .+..++..+++.
T Consensus 265 g~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg----~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG----RTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC----CEEEEEECCCCCceEEEEECCCCCE
Confidence 5 4777798877543 34333 3445677899987 4332111 455566655543
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=5.9e-06 Score=86.58 Aligned_cols=215 Identities=11% Similarity=0.030 Sum_probs=133.7
Q ss_pred cCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEE-EecC--cEEEEEEEEecCceeec-
Q 002405 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSS--LYLHIFKVQITEKSIQI- 105 (927)
Q Consensus 30 dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav-~t~d--g~l~i~~l~~~~~~~~~- 105 (927)
||.+++..+++.+++|+.. ....- .....-++..+....+.=.|....|++ |... +.+.|||++.+ .+...
T Consensus 115 dg~Litc~~sG~l~~~~~k-~~d~h---ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~a 189 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDK-SGDLH---SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSA 189 (412)
T ss_pred CCEEEEEecCCcEEEEecc-CCccc---cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeec
Confidence 4666666688999999984 21100 000011222344456777776666555 7777 78999999866 33222
Q ss_pred CCCCCC----CccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccc
Q 002405 106 GGKQPS----GLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (927)
Q Consensus 106 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~ 181 (927)
...+.. ..++|..+..|-.. . .+..++++|.-+.+++++-. . +
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g-----~---------~~~~fat~T~~hqvR~YDt~--~-q---------------- 236 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEG-----S---------PNYKFATITRYHQVRLYDTR--H-Q---------------- 236 (412)
T ss_pred cCCCCccccceeeeeeccceecCC-----C---------CCceEEEEecceeEEEecCc--c-c----------------
Confidence 122211 23344433322111 0 15678888999999887533 1 1
Q ss_pred ccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee----cCCC
Q 002405 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSG 257 (927)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~ 257 (927)
..+|.++.|......++...|+|..++++...+.+..+|....... .|..
T Consensus 237 --------------------------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 237 --------------------------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred --------------------------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 1123333343333444567899999999988888888888765432 5667
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd 318 (927)
+++ ++..+|.++++|+|+-|..|||+|+++ ..++...-. ....+++-+.++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~kvYv---------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLHKVYV---------KSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc-chhhhhhhh---------hccccEEEecCC
Confidence 888 999999999999999999999999987 555543332 334566766654
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.42 E-value=5e-07 Score=100.83 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=133.2
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-----cCCCCeEEEEEcCCCcEEEEEecCC
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRG 278 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v~v~~sp~~~~la~g~~Dg 278 (927)
+.+|...|++|.|++.. -.++++++-|..+..||...+... .-|+.+..|+||....-+.+.+...
T Consensus 110 lhghsraitd~n~~~q~---------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQH---------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred EecCccceeccccCCCC---------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 45677788888876532 235677788888888988766432 3366667899998655544447777
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecce
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~ 357 (927)
.|++||...++..+..+++ |...|+.++|.. --..+.+++.||+|+.||.........-.......+.-..
T Consensus 181 ~i~vwd~r~gs~pl~s~K~--------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r 252 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKG--------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR 252 (1081)
T ss_pred ceEEEeccCCCcceEEecc--------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc
Confidence 8999999986778888888 999999999976 3446778889999999998643221111111123344444
Q ss_pred ecCCCCCCc-ccccccc---------eeEEEcCC-CceEEEEEcCCcceEEEEec---c----------ceeeecccCCC
Q 002405 358 VKPNQDCKY-EPLMSGT---------SMMQWDEY-GYRLYAIEEGSSERVLIFSF---G----------KCCLNRGVSGM 413 (927)
Q Consensus 358 ~sp~~~~~~-~~l~sg~---------~~~~W~~~-~~~l~~~~~~~~~~v~~~~~---~----------~~~~s~s~d~~ 413 (927)
+-|-++.-. .+...+. ..+.|+.. ..+.+.++.||++.|..|-+ + -.++|-|.|.+
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 555542111 1111111 23346543 35678888999998866554 1 15789999999
Q ss_pred eeeeeeee
Q 002405 414 TYARQVIY 421 (927)
Q Consensus 414 ~~~w~~~~ 421 (927)
+++|.+..
T Consensus 333 lrlWpI~~ 340 (1081)
T KOG0309|consen 333 LRLWPIDS 340 (1081)
T ss_pred eEeeeccH
Confidence 99998753
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.42 E-value=0.00068 Score=75.41 Aligned_cols=269 Identities=11% Similarity=0.078 Sum_probs=134.7
Q ss_pred CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec----CcEEEEEEEEecCceeecCCCCCCCccc
Q 002405 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (927)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~----dg~l~i~~l~~~~~~~~~~~~~~~~~~~ 115 (927)
+.|++|+.+.....+...... ..-+.-..++++|++++|.+... +|.|..|++......+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---------- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---------- 78 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----------
T ss_pred CcEEEEEEcCCCCCceEeeee----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----------
Confidence 578888873222233322211 11223356999999999999877 468999998754211111
Q ss_pred eeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCccccceeecccCCCCcccccccccCCCCCcccc
Q 002405 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (927)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 194 (927)
.......+....-.++.+++..++++.. +|.+.++..+.......... .+......++
T Consensus 79 -------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-------~~~~~g~g~~------- 137 (345)
T PF10282_consen 79 -------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-------TVRHEGSGPN------- 137 (345)
T ss_dssp -------EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------EEESEEEESS-------
T ss_pred -------eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee-------ecccCCCCCc-------
Confidence 0011112222222356678888888875 77888877764311110000 0000000000
Q ss_pred CCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEee-ecCccceeeecccc--e-------ecCCCCeEEEEE
Q 002405 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID--K-------ELGSGDAVCASI 264 (927)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~w~~~~~~--~-------~~~h~~~v~v~~ 264 (927)
..........+ +.++|||+++++.. ....+.+++..... . ...-.++-.++|
T Consensus 138 --------~~rq~~~h~H~----------v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 138 --------PDRQEGPHPHQ----------VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp --------TTTTSSTCEEE----------EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred --------cccccccccee----------EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 00111223333 44577877655433 22234444443221 0 122244458999
Q ss_pred cCCCcEEEE-EecCCeEEEEeccCCCcceEEEeee-cCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEcc--CC
Q 002405 265 APEQQILAV-GTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS--GC 339 (927)
Q Consensus 265 sp~~~~la~-g~~Dg~V~vwd~~~~~~~~~~l~~~-~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW~~~--~~ 339 (927)
+|+++++.+ .-.+++|.+|++......+...... ..+...........|++||||++|.++.. +++|.++++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 999987654 5567899999998312222222211 11111112225789999999999888765 4789999993 33
Q ss_pred ee--EEEeccccccceecceecCCC
Q 002405 340 RL--MSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 340 ~~--~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+ +..+... ...-..++++|++
T Consensus 280 ~l~~~~~~~~~-G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 280 TLTLVQTVPTG-GKFPRHFAFSPDG 303 (345)
T ss_dssp TEEEEEEEEES-SSSEEEEEE-TTS
T ss_pred ceEEEEEEeCC-CCCccEEEEeCCC
Confidence 32 2222211 1224556667776
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00097 Score=70.13 Aligned_cols=250 Identities=11% Similarity=0.141 Sum_probs=134.5
Q ss_pred EEEEEc---cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecC
Q 002405 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIG 106 (927)
Q Consensus 33 lla~~~---~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d---g~l~i~~l~~~~~~~~~~ 106 (927)
++++-+ +..|++|+.+.....+... ..+.+.+..+-++|+|+++.|.++..+ |.+--|.++.....+.+.
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 556665 6789999987332222222 223455777889999999999987654 678888887432222221
Q ss_pred CCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCccccceeecccCCCCccccccccc
Q 002405 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (927)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~ 185 (927)
+ +..+.+....-.++..+++.++++.- .|.|.++..+.. +... ..+..+.+
T Consensus 82 n-----------------~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~--------~~v~~~~h- 133 (346)
T COG2706 82 N-----------------RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQ--------PVVQVVKH- 133 (346)
T ss_pred e-----------------ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--Cccc--------cceeeeec-
Confidence 1 11112221122356667777777765 456666554322 1110 00000000
Q ss_pred CCCCCccccCCCceecccc-cCCCccEEEEEEccCcceEEEEEeCCcEEEEeee-cCccceeeeccccee-------cCC
Q 002405 186 PSNGLASVDTSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-------LGS 256 (927)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~w~~~~~~~~-------~~h 256 (927)
.+. .+. ......+ .++.++|||+++++..- .-.+.+++...+..- ..-
T Consensus 134 ----------~g~---~p~~rQ~~~h~----------H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 134 ----------TGS---GPHERQESPHV----------HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred ----------CCC---CCCccccCCcc----------ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 000 000 0000111 23556888887765442 122444444432211 112
Q ss_pred CCeEEEEEcCCCcEEEEE-ecCCeEEEEeccCCCcceEEEeeec-CCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEE
Q 002405 257 GDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTV 333 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g-~~Dg~V~vwd~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g~v~v 333 (927)
.++--++|+|++++.-+- --+++|.+|..+.....+..++... .+..-.-.....+|..||||++|.++.+- ..|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 334489999999986554 4589999999987433343333321 11111134556889999999999988652 46777
Q ss_pred EEcc
Q 002405 334 WSVS 337 (927)
Q Consensus 334 W~~~ 337 (927)
+.+.
T Consensus 271 f~V~ 274 (346)
T COG2706 271 FSVD 274 (346)
T ss_pred EEEc
Confidence 7773
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.38 E-value=0.00017 Score=89.22 Aligned_cols=218 Identities=18% Similarity=0.195 Sum_probs=122.6
Q ss_pred CCccEEEEEEccCcceEEEEEeCCcEEEEeeec-CccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEe
Q 002405 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd 284 (927)
....|.++.|-+.....+.+..+|.++....+. .....++.. -.-...+ |++||||+.+||..+.+|++-+-+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V-----G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV-----GSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE-----EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 356799999988888888888999988873221 111111111 1124566 999999999999999999987754
Q ss_pred ccC------------CC----------cceEEEeeecC--------CCCC--------CCCCCeeEEEECCCCCEEEEEE
Q 002405 285 LAE------------SA----------SLIRTVSLYDW--------GYSM--------DDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 285 ~~~------------~~----------~~~~~l~~~~~--------~~~~--------~h~~~V~~l~~spdg~~Lasg~ 326 (927)
-+- .+ +.-..|+|..- .+.. .+...-..++|..||.++|+.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 211 00 00011111100 0000 0223446799999999999987
Q ss_pred c---C---CcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCc--ceEEE
Q 002405 327 K---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSS--ERVLI 398 (927)
Q Consensus 327 ~---D---g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~--~~v~~ 398 (927)
- + +.+|||+-+| .+..+-+. + ++ -.....|.|.|. ++.....+. ..|+-
T Consensus 229 ~~~~~~~~R~iRVy~ReG-~L~stSE~-----v-------~g---------Le~~l~WrPsG~-lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSREG-ELQSTSEP-----V-------DG---------LEGALSWRPSGN-LIASSQRLPDRHDVVF 285 (928)
T ss_pred EEcCCCceeEEEEECCCc-eEEecccc-----C-------CC---------ccCCccCCCCCC-EEEEEEEcCCCcEEEE
Confidence 5 2 4788998764 33322211 0 00 013345666543 333222111 11222
Q ss_pred EeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEE
Q 002405 399 FSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 478 (927)
Q Consensus 399 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~w 478 (927)
|.- .+. +|.+....+......|..++|++|+..||+.-.|..-+|
T Consensus 286 fEr--------------------NGL---------------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLW 330 (928)
T PF04762_consen 286 FER--------------------NGL---------------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLW 330 (928)
T ss_pred Eec--------------------CCc---------------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEE
Confidence 111 000 111111111233456899999999999999887773399
Q ss_pred EccCCcEEe
Q 002405 479 DIRQKKWRV 487 (927)
Q Consensus 479 d~~s~~w~~ 487 (927)
....-.|-+
T Consensus 331 t~~NYHWYL 339 (928)
T PF04762_consen 331 TRSNYHWYL 339 (928)
T ss_pred EeeCCEEEE
Confidence 999988853
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=0.00037 Score=78.25 Aligned_cols=218 Identities=12% Similarity=0.099 Sum_probs=129.5
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC--C
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN--K 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~ 143 (927)
.++...++.|...+.+||+|.+||-+++..+.+........+ +... ..++-...+.++.++|.-+..+. +
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa~-snLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAAA-SNLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------cccc-cccchhhhhccCcceEEEEEeccccc
Confidence 455567999999999999999999999999875443211111 0000 01222334566666666655544 3
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+.+.-.+|.|.+|.. -.+.- ..+ .....+++.|.+|.|+.++..+
T Consensus 85 KLTtSDt~GlIiVWml--ykgsW--------------------------~EE------MiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWML--YKGSW--------------------------CEE------MINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cccccCCCceEEEEee--ecccH--------------------------HHH------HhhCcCccEEEEEEEcCCCcEE
Confidence 3333333555544321 11110 000 1123456789999999988888
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCC------cceEEEee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA------SLIRTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~------~~~~~l~~ 297 (927)
+.+-.||.+++ |+-|| -++|.-.- .| .....+.||+|.+.+..+-.+|.+.+||.+..- .+.....+
T Consensus 131 cIvYeDGavIV-GsvdG-NRIwgKeL----kg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg 203 (1189)
T KOG2041|consen 131 CIVYEDGAVIV-GSVDG-NRIWGKEL----KG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG 203 (1189)
T ss_pred EEEEccCCEEE-Eeecc-ceecchhc----ch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeee
Confidence 88889998766 44444 24564221 11 112258899999999999999999999976311 11111111
Q ss_pred ecCCCCCCCCCCeeEEEEC--------CCCCEEEEEEcCCcEEEEEc
Q 002405 298 YDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~s--------pdg~~Lasg~~Dg~v~vW~~ 336 (927)
.. ....-.+..+.|. ||--.||++.++|.+.+-.-
T Consensus 204 ~~----s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 204 IF----SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred ee----cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 10 0011225556664 58889999999998877654
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.37 E-value=1.3e-05 Score=92.11 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=90.7
Q ss_pred EEEEeCCcEEEEeeec---Cccceeeecccce--ecCCCCeE-EEEEcCCCcEEEE-EecCC--eEEEEeccCCCcceEE
Q 002405 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRG--VVELYDLAESASLIRT 294 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la~-g~~Dg--~V~vwd~~~~~~~~~~ 294 (927)
..++|||+.++....+ ..+.+|+..+++. ...+...+ +.+|+|||+.|+. .+.++ .|.+|++.+ + ....
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~-~~~~ 272 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-K-QLTR 272 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC-C-CEEE
Confidence 4468888877776543 3577787765532 23344455 8899999987764 44454 477778765 3 2333
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccc
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (927)
+.. +.+.....+|+|||+.|+.++.. + .|.++++.++.. ..+..+ ......+.++|++ ..++.
T Consensus 273 l~~--------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~i~~ 338 (417)
T TIGR02800 273 LTN--------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR-GGYNASPSWSPDG----DLIAF 338 (417)
T ss_pred CCC--------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-CCCccCeEECCCC----CEEEE
Confidence 333 44555678999999988876653 3 467777776653 333323 3446677889987 44432
Q ss_pred cc------eeEEEcCCCceE
Q 002405 372 GT------SMMQWDEYGYRL 385 (927)
Q Consensus 372 g~------~~~~W~~~~~~l 385 (927)
.. .+..|+..++..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EEccCCceEEEEEeCCCCCe
Confidence 21 566777766543
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.1e-06 Score=63.00 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=34.9
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
+++.++.+ |.++|++|+|+|++.+||+|+.|+.|++||
T Consensus 2 ~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35667777 999999999999999999999999999997
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.6e-05 Score=84.44 Aligned_cols=114 Identities=15% Similarity=0.284 Sum_probs=74.1
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeee--cCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecC---C
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRR---G 278 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~--d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~D---g 278 (927)
...++|.++.|+ |+|+-+++... -..+.+.|..-.-.. .+ .++- ++-|||.|++|+.++-+ |
T Consensus 268 ~k~GPVhdv~W~----------~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 268 LKEGPVHDVTWS----------PSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred CCCCCceEEEEC----------CCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEeecCCCCC
Confidence 456788888775 44543333222 122333333211111 22 3344 89999999999987754 7
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc------CCcEEEEEccCCee
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL 341 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~------Dg~v~vW~~~~~~~ 341 (927)
.+.|||+.+ .+++.++.. . .-+-..|+|||+++.|+.. |++++||+..|..+
T Consensus 337 ~mEvwDv~n-~K~i~~~~a---------~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 337 DMEVWDVPN-RKLIAKFKA---------A-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ceEEEeccc-hhhcccccc---------C-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 999999987 666665554 2 2355799999999988763 78999999988653
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=3.4e-05 Score=88.79 Aligned_cols=129 Identities=9% Similarity=0.131 Sum_probs=76.4
Q ss_pred eEEEEEeCCcEEEEeee-cC--ccceeeecccce--ecCCCCeE-EEEEcCCCcEEEE-EecCCe--EEEEeccCCCcce
Q 002405 222 LLFVLYSNGQLMSCSVS-KK--GLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRGV--VELYDLAESASLI 292 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~-d~--~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la~-g~~Dg~--V~vwd~~~~~~~~ 292 (927)
....++|||+.++..+. ++ .+.+++..+++. ........ ..+|+|||+.||. .+.+|. |.++|+++ + ..
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g-~~ 298 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-K-AL 298 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-C-Ce
Confidence 34566889987776554 23 355556554432 22222233 7899999998875 566775 55666654 3 33
Q ss_pred EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCc--EEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~--v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
..+.. +.+.....+|||||+.|+..+. ++. +.++++.+++.. .+... .....++.++|++
T Consensus 299 ~~lt~--------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~-g~~~~~~~~SpDG 361 (448)
T PRK04792 299 TRITR--------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFE-GEQNLGGSITPDG 361 (448)
T ss_pred EECcc--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecC-CCCCcCeeECCCC
Confidence 33333 4455678899999998877664 344 555566666533 22211 1223456888988
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=3.4e-05 Score=88.84 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=86.0
Q ss_pred EEEEEeCCcEEEEeeec-C--ccceeeecccce--ecCCCCeE-EEEEcCCCcEEEE-EecCC--eEEEEeccCCCcceE
Q 002405 223 LFVLYSNGQLMSCSVSK-K--GLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRG--VVELYDLAESASLIR 293 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d-~--~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la~-g~~Dg--~V~vwd~~~~~~~~~ 293 (927)
...++|||+.++..+.+ + .+.+|+..+++. +....... ..+|||||+.||. .+.+| .|.+||+++ +. ..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~~ 280 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-LS 280 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-eE
Confidence 34568888877665533 2 355566654432 22223334 7899999998884 44555 577778775 43 33
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CC--cEEEEEccCCeeEEEeccccccceecceecCCCCCCccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (927)
.+.. +.+......|||||+.|+..+. +| .|.++++.++.... +... ......+.++|++ ..++
T Consensus 281 ~lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Spdg----~~i~ 346 (430)
T PRK00178 281 RVTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSADG----KTLV 346 (430)
T ss_pred Eccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECCCC----CEEE
Confidence 3433 4555677899999998876664 33 46666776665322 2211 1223456788887 3332
Q ss_pred ccc------eeEEEcCCCceE
Q 002405 371 SGT------SMMQWDEYGYRL 385 (927)
Q Consensus 371 sg~------~~~~W~~~~~~l 385 (927)
... .+..|+..+++.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEccCCceEEEEEECCCCCE
Confidence 111 455677666544
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=5.6e-05 Score=84.54 Aligned_cols=148 Identities=13% Similarity=0.167 Sum_probs=103.6
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCc----cc----eeeecccceecCCCCeE-EEEEcCCCcEEEEEe
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG----LK----LAEFIKIDKELGSGDAV-CASIAPEQQILAVGT 275 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~----~~----~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~ 275 (927)
.+......+++|+...+++++...||..-+..-+..+ .+ .-++.-.+.+.||...| .+.||.+.+.|-+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3456678888998888888888888876554432211 11 01111223347999999 999999999999999
Q ss_pred cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEE-Eecccccccee
Q 002405 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSIS 354 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~-~l~~~~~~~v~ 354 (927)
.+|.|.||-+-. ++.....-.. -.+..|.+++|..||..++..++||.|.|=++.|++... .|++.+ ..
T Consensus 91 t~GlIiVWmlyk-gsW~EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~---l~ 160 (1189)
T KOG2041|consen 91 TSGLIIVWMLYK-GSWCEEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL---LA 160 (1189)
T ss_pred CCceEEEEeeec-ccHHHHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe---cc
Confidence 999999999865 4322111110 146679999999999999999999999999998877543 344321 23
Q ss_pred cceecCCC
Q 002405 355 SPIVKPNQ 362 (927)
Q Consensus 355 s~~~sp~~ 362 (927)
.+.+++|.
T Consensus 161 hv~ws~D~ 168 (1189)
T KOG2041|consen 161 HVLWSEDL 168 (1189)
T ss_pred ceeecccH
Confidence 46677775
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.28 E-value=0.00086 Score=72.18 Aligned_cols=124 Identities=11% Similarity=0.212 Sum_probs=82.8
Q ss_pred eCCcEEEEeeecC-ccceeeecccc--eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 228 SNGQLMSCSVSKK-GLKLAEFIKID--KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 228 ~dG~~~~~~~~d~-~~~~w~~~~~~--~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
.|+.-.+.+..|+ .+-+.+...++ +..+.-+-+ ++..+|+|+.++++-....+-+.|+++ +. .+.+...
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn-v~~idkS----- 441 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN-VRLIDKS----- 441 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC-eeEeccc-----
Confidence 3333444444444 23344444333 123334556 999999999999999889999999987 43 3333221
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCC----cEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~Dg----~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.-+-|+..+|+|+++++|-+--+| .|+++|+.+++....-.. .+.=.+++|.|++
T Consensus 442 --~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ 500 (668)
T COG4946 442 --EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDG 500 (668)
T ss_pred --ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCC
Confidence 467899999999999999876655 689999999876654332 2334567888877
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=9.6e-05 Score=80.81 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=55.3
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec-----------Cc
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-----------SL 89 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~-----------dg 89 (927)
.+-.|.+||-|++|++.....|.+|=.. . +.|..+ + -|-.+.-+.|||.-++|++=+. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-~------f~r~~R-F-~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGE-S------FDRIQR-F-YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCc-c------HHHHHh-c-cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 3667999999999999999999999653 1 222211 1 1445668999999999998542 24
Q ss_pred EEEEEEEEecCceeec
Q 002405 90 YLHIFKVQITEKSIQI 105 (927)
Q Consensus 90 ~l~i~~l~~~~~~~~~ 105 (927)
.++|||+.++..+..+
T Consensus 283 ~l~IWDI~tG~lkrsF 298 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSF 298 (698)
T ss_pred eEEEEEccccchhcce
Confidence 7999999988765443
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.25 E-value=0.0001 Score=76.18 Aligned_cols=241 Identities=15% Similarity=0.244 Sum_probs=134.0
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEE
Q 002405 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (927)
Q Consensus 69 ~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~ 148 (927)
.|.+...-|--.-+.+.+.|.++|+|--.. ..... ++ +...++.+ .++.+.......|++|
T Consensus 26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrd-s~q~w-----------ps----I~~~mP~~---~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 26 DVNAAILIPKEEGVISVSEDRTVRVWLKRD-SGQYW-----------PS----IYHYMPSP---CSAMEYVSESRRLYVG 86 (404)
T ss_pred hhhhheeccCCCCeEEccccceeeeEEecc-ccccC-----------ch----hhhhCCCC---ceEeeeeccceEEEEE
Confidence 345556666667789999999999994321 11111 10 11111111 1223333445679999
Q ss_pred ecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe
Q 002405 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (927)
Q Consensus 149 ~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~ 228 (927)
..+|++.-++.....+...- . -....|...+..+.|+......+..+-
T Consensus 87 ~~ngtvtefs~sedfnkm~~-------------------------------~-r~~~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTF-------------------------------L-KDYLAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred EecceEEEEEhhhhhhhcch-------------------------------h-hhhhhhhcceeeEEecCCceeEEEecc
Confidence 99999887765433322210 0 112345566666665444433333333
Q ss_pred CCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCC--cEEEEEecCCeEEEEeccCC-CcceEEEeeecCCCCCC
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ--QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMD 305 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~--~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~ 305 (927)
|..+.-.++. ..+..||---.+.+..++. .+.-+|-..|.|.+-.+... -.++.++.+
T Consensus 135 dk~~~~hc~e-----------~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-------- 195 (404)
T KOG1409|consen 135 DKQFAWHCTE-----------SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-------- 195 (404)
T ss_pred ccceEEEeec-----------cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC--------
Confidence 3332222221 1111222111122222221 14445666677766665432 356677777
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeE-EEeccccccceecceecCCCCCCcccccccc---eeEEEcCC
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~-~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (927)
|.+++.+++|.|....|.+|..|..+.+||+.+++-. ..+.+| ...|..+..-+.. ..+.|.. .+.+|+.+
T Consensus 196 h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t----~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 196 HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHT----RQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhh----eeeeeccCCCeEEEEecc
Confidence 9999999999999999999999999999999776543 355555 6666665543332 3333332 78889887
Q ss_pred Cce
Q 002405 382 GYR 384 (927)
Q Consensus 382 ~~~ 384 (927)
..+
T Consensus 271 ~~r 273 (404)
T KOG1409|consen 271 VKR 273 (404)
T ss_pred cee
Confidence 644
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.19 E-value=0.00019 Score=71.76 Aligned_cols=201 Identities=10% Similarity=0.026 Sum_probs=113.5
Q ss_pred cEEEEcCCc-----cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeE
Q 002405 71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (927)
Q Consensus 71 ~~v~wspDg-----~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (927)
..+.|.|-+ -+||+|.+.|.+.+|...+.....+.......+ + . -+.-.+-....+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~-----v--------~------~~~r~cd~~~~~ 131 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNND-----V--------T------LVKRYCDLKFPL 131 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccc-----h--------h------hhhhhcccccce
Confidence 467777744 579999999999999987544322221100000 0 0 001111123456
Q ss_pred EEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEE
Q 002405 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (927)
Q Consensus 146 ~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (927)
.+++.|.+++.+..++...+... .. ..-.+.+ +.
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~-----------------------------------h~-~~~~~ns----------~~ 165 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAV-----------------------------------HN-QNLTQNS----------LH 165 (344)
T ss_pred eeccCCcceeEEEEecCccccee-----------------------------------ec-cccceee----------eE
Confidence 77777777777766654432210 00 0011333 34
Q ss_pred EEeCCcEEEEeeecCccceeeeccc-ce-----ecCCC-CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeee
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKI-DK-----ELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~-~~-----~~~h~-~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
+++|+++.++-.+...+..+.+... +. ....+ ...+.+||.+...+|++++||++.|||++..+.+......
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss- 244 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS- 244 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc-
Confidence 4666666665555444443332211 11 12223 3449999999999999999999999999863333322221
Q ss_pred cCCCCCCCCCCeeEEEECCCCC---EEEEEEcCCcEEEEEccCCee
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSGCRL 341 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~---~Lasg~~Dg~v~vW~~~~~~~ 341 (927)
..+.|.|.++.+.|||-|. ++.+-.. +.+.|-|+.+.+-
T Consensus 245 ---trp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 245 ---TRPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVN 286 (344)
T ss_pred ---cCCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCce
Confidence 1234899999999998554 3333332 6777888876543
No 275
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.19 E-value=0.00062 Score=69.50 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=101.0
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC------CCEEEEEEcCCcEE
Q 002405 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD------NSAFAVGWKSRGLT 332 (927)
Q Consensus 259 ~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd------g~~Lasg~~Dg~v~ 332 (927)
.-.++||||+.+||.+...|+|++||+. +..+..++.... ....-+.+|..|.|-+- ..-|.+-..+|.++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~I~p~~~-~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM--GSELFVIPPAMS-FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc--cceeEEcCcccc-cCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3389999999999999999999999986 445555544221 11123456777777642 22344444557776
Q ss_pred EEEccCC-----eeEEEec--cccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEecccee
Q 002405 333 VWSVSGC-----RLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (927)
Q Consensus 333 vW~~~~~-----~~~~~l~--~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~ 405 (927)
=+-+..+ +..+++. .|....| +..+|++.. +++.+...+... .-
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi--------------------~~~vy~p~h-~LLlVgG~~~~~--------~~ 173 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGI--------------------NSAVYHPKH-RLLLVGGCEQNQ--------DG 173 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCce--------------------eEEEEcCCC-CEEEEeccCCCC--------Cc
Confidence 6665221 2222221 1212233 444555433 233322111110 00
Q ss_pred eecccCCCeeeeeeeecCCeEEEeecCCCCc----ceEEEeecCc-----ccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002405 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDE----LKILHLNLPV-----SYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (927)
Q Consensus 406 ~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~----~~w~~~~~~~-----~~~~~~~~I~~va~spdG~~la~ag~dg~i 476 (927)
.+...+..+..|.++.+...-..+...+... ..+...+++. .......-|..+++||||+.||+...+|.+
T Consensus 174 ~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 174 MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE
Confidence 1112223345566665444332222221111 0111111121 111234568889999999999999999999
Q ss_pred -EEEccC
Q 002405 477 -LYDIRQ 482 (927)
Q Consensus 477 -~wd~~s 482 (927)
+|++-+
T Consensus 254 sLW~iPs 260 (282)
T PF15492_consen 254 SLWEIPS 260 (282)
T ss_pred EEEecCc
Confidence 999865
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.15 E-value=8e-06 Score=99.82 Aligned_cols=182 Identities=10% Similarity=0.159 Sum_probs=129.4
Q ss_pred CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
.+-..| ++.=+|...+-.||+.||.|++|.... +..+.+++.. -...|+.+.|+.+|+.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~-------g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTA-------GNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeecc-------CcchhhhhhhcccCCceeeeccCCceee
Confidence 345566 888889999999999999999999977 6666666641 2478999999999999999999999999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCccccccc------ceeEEEcCC-CceEEEEEcCCcceEE--EEec-cc
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG------TSMMQWDEY-GYRLYAIEEGSSERVL--IFSF-GK 403 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg------~~~~~W~~~-~~~l~~~~~~~~~~v~--~~~~-~~ 403 (927)
|.+. .+.+.+.+-| ....+..+|-.. .+++. ..+.+||.. .+....+...|++.+. ++.+ .+
T Consensus 2278 ~q~~-pk~~~s~qch-nk~~~Df~Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCH-NKALSDFRFIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred cccC-CcceeccccC-Cccccceeeeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce
Confidence 9986 4455555444 333444444221 11221 167789853 2233333366776664 4444 66
Q ss_pred eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 404 ~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
.+.|||.+|-+++||+.+... -|.++. +. ...++++|+.+|.+ +|++..
T Consensus 2350 llisggr~G~v~l~D~rqrql-------------------------~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQL-------------------------RHTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHH-------------------------HHHhhh----hh-hhheeeccCcccceEEEEccc
Confidence 789999999999999876443 244443 44 67899999999999 999865
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.00084 Score=73.69 Aligned_cols=303 Identities=16% Similarity=0.228 Sum_probs=163.5
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeEEEEEcCCCcEEEEEec-----------CCeEEEEeccCCCc
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESAS 290 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v~v~~sp~~~~la~g~~-----------Dg~V~vwd~~~~~~ 290 (927)
+.+||-|.++++ .....+.+|.+....+. -.|.+.--+.|||..++|+|=+. ...+.|||+.+ |.
T Consensus 216 v~wSP~GTYL~t-~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~ 293 (698)
T KOG2314|consen 216 VRWSPKGTYLVT-FHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GL 293 (698)
T ss_pred EEecCCceEEEE-EeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-cc
Confidence 556777776664 33344667876654332 35665559999999999998552 25799999998 87
Q ss_pred ceEEEeeecCCCCCCCCCCe-eEEEECCCCCEEEEEEcCCcEEEEEccCCeeEE--EeccccccceecceecCCCCCCcc
Q 002405 291 LIRTVSLYDWGYSMDDTGPV-SCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYE 367 (927)
Q Consensus 291 ~~~~l~~~~~~~~~~h~~~V-~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~--~l~~~~~~~v~s~~~sp~~~~~~~ 367 (927)
..+.+.... ....+ .-..||.|++++|--.. .+|.|++...-.++. +++ .++|....|+|.+ .
T Consensus 294 lkrsF~~~~------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk---i~gIr~FswsP~~----~ 359 (698)
T KOG2314|consen 294 LKRSFPVIK------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK---ISGIRDFSWSPTS----N 359 (698)
T ss_pred hhcceeccC------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC---CccccCcccCCCc----c
Confidence 777776521 11222 34689999999998777 589999986633321 121 3445556666664 3
Q ss_pred cccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeeccc----CCCeeeeeeeecCCeEEEeecCCC-C-------
Q 002405 368 PLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSEDT-D------- 435 (927)
Q Consensus 368 ~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~----d~~~~~w~~~~~~~~~~~~~~~~~-~------- 435 (927)
.+ ..|.+++...-.. -.+..++-.+.+-+... |..+ .|. ...+++.+.-..-+ .
T Consensus 360 ll------AYwtpe~~~~par-----vtL~evPs~~~iRt~nlfnVsDckL-hWQ--k~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 360 LL------AYWTPETNNIPAR-----VTLMEVPSKREIRTKNLFNVSDCKL-HWQ--KSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred eE------EEEcccccCCcce-----EEEEecCccceeeeccceeeeccEE-Eec--cCCcEEEEEEEeeccccccceEe
Confidence 33 3576655432110 01122221222211110 0000 011 12233332211100 0
Q ss_pred ---cceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCC---ceE-EEEcc--CCcEEeeCCccceeeeEEEEEEee-
Q 002405 436 ---ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL- 505 (927)
Q Consensus 436 ---~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d---g~i-~wd~~--s~~w~~f~~~~~e~~~~v~~~~W~- 505 (927)
.+....-.+|-....-..+|-..+|-|.|..+|+-+.. .++ .|-+. .++|++.... +. -.+..+.|.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk-~~~N~vfwsP 502 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DK-KFANTVFWSP 502 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cc-cccceEEEcC
Confidence 01112223454444455678889999999877754432 345 77765 4455543321 11 235567785
Q ss_pred -CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEc
Q 002405 506 -GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561 (927)
Q Consensus 506 -~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 561 (927)
|..++++.... ..+.+.+|+.+.-+-..+.+..-....-+-.+|.|.++++.++
T Consensus 503 kG~fvvva~l~s--~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 503 KGRFVVVAALVS--RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred CCcEEEEEEecc--cccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 77888875543 4467888877411111111111112334567899998888654
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.13 E-value=0.0041 Score=67.97 Aligned_cols=278 Identities=12% Similarity=0.075 Sum_probs=148.5
Q ss_pred CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec----------CcEEEEEEEEecCceeecCCCC
Q 002405 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGKQ 109 (927)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~----------dg~l~i~~l~~~~~~~~~~~~~ 109 (927)
++|.+-|.. ....++...-. .++. .+ +||||+.|+++.+ ++.|.+||+.+.+.........
T Consensus 27 ~~v~ViD~~-~~~v~g~i~~G------~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGE-AGRVLGMTDGG------FLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECC-CCEEEEEEEcc------CCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 789999986 44444443211 1222 24 9999999999877 6889999998654321111000
Q ss_pred CCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec--CCcEEEEecCCccccceeecccCCCCcccccccccCC
Q 002405 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (927)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~--dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 187 (927)
.+ .. ..+.......+++|++.+++... ++.+.+++........ ++ +. ++
T Consensus 98 ~p-----------~~---~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~-ei-------------~v-p~ 148 (352)
T TIGR02658 98 GP-----------RF---LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR-MM-------------DV-PD 148 (352)
T ss_pred Cc-----------hh---hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE-EE-------------eC-CC
Confidence 00 00 01112234578889998888753 5677776654322111 11 10 00
Q ss_pred CCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec-CccceeeecccceecCCCCeE--EEEE
Q 002405 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAV--CASI 264 (927)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~~~~w~~~~~~~~~~h~~~v--~v~~ 264 (927)
. ...|......+...+.||+.+....++ +.... .+.....+-.+++ .-.+
T Consensus 149 ~------------------------~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~---~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 149 C------------------------YHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI---KPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred C------------------------cEEEEecCCccEEEeecCceEEEEecCCCceEE---eeeeeecCCccccccCCce
Confidence 0 001222222233446777766655433 22111 0000000111122 1145
Q ss_pred cC-CCcEEEEEecCCeEEEEeccCCCc-ceEEEeeecCCCC--CCCCCCeeEEEECCCCCEEEEEEc----------CCc
Q 002405 265 AP-EQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWK----------SRG 330 (927)
Q Consensus 265 sp-~~~~la~g~~Dg~V~vwd~~~~~~-~~~~l~~~~~~~~--~~h~~~V~~l~~spdg~~Lasg~~----------Dg~ 330 (927)
++ +|+++-+... |+|.+-|+..... ....+.....+.. .-..+...-++++|||+.+.++.. .+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 56 8888777566 9999999754211 1111111100000 013455566999999998888531 147
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcc-ccc--cc--ceeEEEcCCCceEEEEE
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SG--TSMMQWDEYGYRLYAIE 389 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~-~l~--sg--~~~~~W~~~~~~l~~~~ 389 (927)
|.++|..+++.+..+.-. ..+..++++|++ . .+. .+ ..+.+.|..+++.+...
T Consensus 281 V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999999988887753 467889999998 4 222 21 14666677666665554
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.13 E-value=1.8e-05 Score=83.55 Aligned_cols=97 Identities=18% Similarity=0.288 Sum_probs=74.0
Q ss_pred ccceeeeccc--ceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC
Q 002405 241 GLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (927)
Q Consensus 241 ~~~~w~~~~~--~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp 317 (927)
.+.+|....+ +...||-..+ .++|+||.+.|.++..|..|||=.... ...+..+-. ||+.-|..++.-+
T Consensus 133 ~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfcl-------GH~eFVS~isl~~ 204 (390)
T KOG3914|consen 133 SFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCL-------GHKEFVSTISLTD 204 (390)
T ss_pred eeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhcc-------ccHhheeeeeecc
Confidence 3444544322 2237999999 999999999999999999999977654 222333322 4999999999876
Q ss_pred CCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 318 DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 318 dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
++.|++|+.|+++++||+.+|++..++.
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -CceeeecCCCCcEEEEecccCCcccccc
Confidence 4669999999999999999988776654
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.12 E-value=4.6e-05 Score=77.15 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=122.1
Q ss_pred cEEEEcC---Ccc-EEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEE
Q 002405 71 LQAVWSP---DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (927)
Q Consensus 71 ~~v~wsp---Dg~-~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~ 146 (927)
..+.|+. ||. .++.+-..|.|.+|..........+.+-........ ..--..+...+..++
T Consensus 73 ~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~---------------~~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 73 FDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV---------------EALSLDISTSGTKIF 137 (339)
T ss_pred ceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe---------------eeeEEEeeccCceEE
Confidence 5677764 455 677778888899988765443322221111100000 000023344567788
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
++.++|.+..+.-+ ....+ .-..|..|...+....|+.
T Consensus 138 vs~s~G~~~~v~~t---~~~le-------------------------------~vq~wk~He~E~Wta~f~~-------- 175 (339)
T KOG0280|consen 138 VSDSRGSISGVYET---EMVLE-------------------------------KVQTWKVHEFEAWTAKFSD-------- 175 (339)
T ss_pred EEcCCCcEEEEecc---eeeee-------------------------------ecccccccceeeeeeeccc--------
Confidence 88889988744321 11110 0012445565665555532
Q ss_pred EeCCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
.+-.++.+|++|+.+.-||...+..+ .-|...| ++.=|| +..++|||+-|-.|++||.+.-++++..-+
T Consensus 176 -~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--- 251 (339)
T KOG0280|consen 176 -KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--- 251 (339)
T ss_pred -CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---
Confidence 23357788888888888998744433 3466677 777776 678999999999999999986455554322
Q ss_pred CCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCC
Q 002405 300 WGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~ 339 (927)
-.|.|+.+.++|- ++.||++ .-++.+|-+...+
T Consensus 252 ------v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 252 ------VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK 286 (339)
T ss_pred ------cccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence 3589999999994 3344444 4467778777554
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.01 E-value=2.4e-05 Score=95.92 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=119.7
Q ss_pred eEEEee--ccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccE
Q 002405 134 SVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (927)
Q Consensus 134 ~v~~i~--~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (927)
.|.++. +....-++|+.||.++.+.|....... .++. .+ .+.+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-------------------------~~rt---------~g-~s~v 2254 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-------------------------CFRT---------AG-NSRV 2254 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-------------------------Eeec---------cC-cchh
Confidence 445553 334567788899999999886432111 1110 11 1455
Q ss_pred EEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc--ceecCCCCeE-EEEEcCCCcEEEEEe---cCCeEEEEec
Q 002405 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGT---RRGVVELYDL 285 (927)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~--~~~~~h~~~v-~v~~sp~~~~la~g~---~Dg~V~vwd~ 285 (927)
+.+.|+..++.+.+..- ||.+-+|+.... ..++.|+.+. ..+|=- .++|+++ .++.+.+||.
T Consensus 2255 tr~~f~~qGnk~~i~d~----------dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2255 TRSRFNHQGNKFGIVDG----------DGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred hhhhhcccCCceeeecc----------CCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence 56566555544444444 444555654311 1135677776 666654 6677654 5689999997
Q ss_pred cCCC--cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCC
Q 002405 286 AESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (927)
Q Consensus 286 ~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~ 363 (927)
...+ .+++ .. |.+.++++++-|.-+.|.+|+.+|.|++||+...++.++++.- + .
T Consensus 2323 l~~~~~s~v~--~~--------H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~-~-- 2379 (2439)
T KOG1064|consen 2323 LLPPMNSLVH--TC--------HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D-T-- 2379 (2439)
T ss_pred ccCcccceee--ee--------cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h-h--
Confidence 6422 2233 33 9999999999999999999999999999999887776665431 1 1
Q ss_pred CCcccccccc---eeEEEcCCCceEEEEEc
Q 002405 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (927)
.+.+.+|+ .+++|+..+..++..+.
T Consensus 2380 --~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2380 --REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred --hheeeccCcccceEEEEccccchhhcCc
Confidence 15666665 89999999887777654
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.00 E-value=0.00033 Score=70.18 Aligned_cols=171 Identities=11% Similarity=-0.007 Sum_probs=110.1
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
+++++|+++++++-+....|-.|.++..++.+......+ .++.=.+.+||.....+|++..||++.|||+....
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP------TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc------cCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 899999999999999999999999987554443322211 33445788999999999999999999999996532
Q ss_pred -eE---EEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeee
Q 002405 341 -LM---STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA 416 (927)
Q Consensus 341 -~~---~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~ 416 (927)
++ .+-+.||.+.+..+.|++.+. -.|+. ...|.+.+..++.
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~-------------------lDLLf-~sEhfs~~hv~D~--------------- 281 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGL-------------------LDLLF-ISEHFSRVHVVDT--------------- 281 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCc-------------------ceEEE-EecCcceEEEEEc---------------
Confidence 22 233445567777777776541 01111 2233333333222
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeec-CcccccCCC-ceEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeC
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNW-PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFG 489 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~-~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~ 489 (927)
....+- +.+.+ +..+..|+. .|....|+.+|.-+-+++++..+-|++.+++-..|.
T Consensus 282 ---R~~~~~--------------q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srsR~~fp 339 (344)
T KOG4532|consen 282 ---RNYVNH--------------QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRSRFSFP 339 (344)
T ss_pred ---ccCcee--------------eEEecCccccccccccccccccccCCCcccccccchhhheeeccccceeccC
Confidence 111110 00111 122334443 377789999999999999988888998887655554
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00036 Score=70.87 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=80.3
Q ss_pred EEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCC
Q 002405 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
.++.|++.....+.-.++|++......+. ...+.+.|++|.-.. .++|+.. -.++-+|+.||.+.-||++.++
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 45556555555455556666653222221 123444567888777 7888764 4688899999999999998534
Q ss_pred cceEE-EeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccC
Q 002405 290 SLIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 290 ~~~~~-l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~ 338 (927)
+.+.. .+. |+..|.+|.=|| ++.++|+|+.|-.+++||...
T Consensus 200 ~~i~~n~kv--------H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 200 TFIWHNSKV--------HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ceeeeccee--------eecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 44433 334 899999999886 799999999999999999863
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=1.5e-05 Score=86.38 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=107.6
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc------ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~------~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.||+..+ .++--.+.+-+++++.|.+|++|.+...+. +..+... |+.+|.++.|-.|-+++|++
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a--------Hkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA--------HKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh--------ccCcccceeeeeccceeeec-
Confidence 6888888 554444556688999999999999976443 2334444 99999999999999998775
Q ss_pred cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceee
Q 002405 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL 406 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 406 (927)
||++.+||.+-+++....... |.. .+|..++.-. .-|. .++ ++
T Consensus 803 -D~giHlWDPFigr~Laq~~da-----------pk~-------~a~~~ikcl~----------nv~~-~il-------iA 845 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDA-----------PKE-------GAGGNIKCLE----------NVDR-HIL-------IA 845 (1034)
T ss_pred -cCcceeecccccchhHhhhcC-----------ccc-------CCCceeEecc----------cCcc-hhe-------ee
Confidence 789999999877665433221 110 0111111110 0000 010 11
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
-++...+++++|....+-. ..|+... --+-+.-++++++-|.|+++|+|=.+|.+ +-|.++|+
T Consensus 846 gcsaeSTVKl~DaRsce~~-----------~E~kVcn----a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWT-----------CELKVCN----APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eccchhhheeeecccccce-----------eeEEecc----CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 2244556776665433210 1122211 12345668999999999999999999999 99999886
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.92 E-value=7.9e-05 Score=83.84 Aligned_cols=95 Identities=20% Similarity=0.391 Sum_probs=70.8
Q ss_pred cCCCCeE-EEEEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCc
Q 002405 254 LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~ 330 (927)
-||+.++ .+-|+|+. ..+|+++.|..|..||+......+..+.. | |+ ....|+|+. |+..||+.- .+-
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w-----~s-~asqVkwnyk~p~vlassh-g~~ 181 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--W-----RS-AASQVKWNYKDPNVLASSH-GND 181 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--c-----cc-cCceeeecccCcchhhhcc-CCc
Confidence 5889998 99999975 57999999999999999875555555444 1 33 457899997 677776654 478
Q ss_pred EEEEEcc-CCeeEEEeccccccceeccee
Q 002405 331 LTVWSVS-GCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 331 v~vW~~~-~~~~~~~l~~~~~~~v~s~~~ 358 (927)
+++||.. |+...+++++| .+.|+++.|
T Consensus 182 i~vwd~r~gs~pl~s~K~~-vs~vn~~~f 209 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGH-VSSVNSIDF 209 (1081)
T ss_pred eEEEeccCCCcceEEeccc-ceeeehHHH
Confidence 9999995 55677788776 555665555
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.85 E-value=0.0065 Score=68.60 Aligned_cols=249 Identities=19% Similarity=0.162 Sum_probs=129.3
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEE
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
++..+.+++.||.+..+|.++ ++.+-.... .+.+. -+| ++..+..+..|+.+..||..+++.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence 467788889999999999887 655443322 12221 122 345666777889999999988887766
Q ss_pred ecccccc----ceecceecCCCCCCcccccc-c-ceeEEEcCCCceEEEEEc-CCc---c---eEEEE--ec---cceee
Q 002405 345 IRQISLS----SISSPIVKPNQDCKYEPLMS-G-TSMMQWDEYGYRLYAIEE-GSS---E---RVLIF--SF---GKCCL 406 (927)
Q Consensus 345 l~~~~~~----~v~s~~~sp~~~~~~~~l~s-g-~~~~~W~~~~~~l~~~~~-~~~---~---~v~~~--~~---~~~~~ 406 (927)
....... ...++... ++ ..++. . ..+..+++.+++...... +.. . ++..+ ++ +..+.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 5432110 00111111 11 12211 1 255556665554332211 000 0 00000 00 33444
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc-
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 484 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~- 484 (927)
.++.++.+..++...++ ..|... ..... ....++..+.+++.+|.+ .+|..+++
T Consensus 246 ~~~~~g~l~a~d~~tG~-------------~~W~~~-----~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGR-------------VLWKRD-----ASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEcCCEEEEEECCCCc-------------EEEeec-----cCCcc------CceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 44455555555543322 345432 00111 122357788888889988 99998875
Q ss_pred -EEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEE--ccCCEEEEEEc
Q 002405 485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR 561 (927)
Q Consensus 485 -w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~v~~~ 561 (927)
|+.-.. .. .......-.++.+++++ .+..+.+++.+ +..++++..+....+..+ ..++.|++.+.
T Consensus 302 ~W~~~~~--~~--~~~ssp~i~g~~l~~~~-----~~G~l~~~d~~---tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDEL--KY--RQLTAPAVVGGYLVVGD-----FEGYLHWLSRE---DGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEccccc--cC--CccccCEEECCEEEEEe-----CCCEEEEEECC---CCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 542110 00 01112233466666652 23467777653 346777776655433333 35678999999
Q ss_pred CCeEEEEE
Q 002405 562 PFDVHIFH 569 (927)
Q Consensus 562 d~~i~l~~ 569 (927)
||.+..|+
T Consensus 370 dG~l~~~~ 377 (377)
T TIGR03300 370 DGDLYAFR 377 (377)
T ss_pred CceEEEeC
Confidence 99888763
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=0.0041 Score=78.70 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=78.3
Q ss_pred EEEEeCCc-EEEEeeecCccceeeeccccee--c-------------C----------CCCeEEEEEcCCCcEEEEEecC
Q 002405 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--L-------------G----------SGDAVCASIAPEQQILAVGTRR 277 (927)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~--~-------------~----------h~~~v~v~~sp~~~~la~g~~D 277 (927)
++++|||+ ++++...++.++.||..++... . + ...+..++++++|.++++-+.+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 45678876 6666666777888875532210 0 0 1124488999999999999999
Q ss_pred CeEEEEeccCCCcceEEEeeec-CCC-----CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee
Q 002405 278 GVVELYDLAESASLIRTVSLYD-WGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (927)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~-~~~-----~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~ 341 (927)
+.|++||.++ +. +.++.+.. .+. ..+.-.....|+++|||+.+++-+.++.|++||+.++..
T Consensus 825 ~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999875 43 33332210 000 011223467899999999888888899999999988754
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0013 Score=74.65 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=57.1
Q ss_pred EEEEcCCCcE-EEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcCC--cEEE
Q 002405 261 CASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSR--GLTV 333 (927)
Q Consensus 261 ~v~~sp~~~~-la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~Dg--~v~v 333 (927)
.-.|||||+. ++..+.+ ..|.++|+.+ ++ .+.+.. ..+.+...+|||||+.|+.. +.++ .+.+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~-~~~lt~--------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GK-KEKIAS--------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCC-Cc-EEEEec--------CCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 8899999984 6654443 4688888865 43 333333 35666778899999877654 3343 5666
Q ss_pred EEccCCeeEEEeccccccceecceecCCC
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
+++.++.. ..+..+ ........|+||+
T Consensus 262 ~dl~~g~~-~~LT~~-~~~d~~p~~SPDG 288 (419)
T PRK04043 262 YDTNTKTL-TQITNY-PGIDVNGNFVEDD 288 (419)
T ss_pred EECCCCcE-EEcccC-CCccCccEECCCC
Confidence 67777653 333322 2223456788887
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.0015 Score=74.25 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=57.3
Q ss_pred EEEeCCcEEEEeeec-Cccce--eeecccce--ecCCCCeEEEEEcCCCcEEEEEecC---------CeEEEEeccCCCc
Q 002405 225 VLYSNGQLMSCSVSK-KGLKL--AEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRR---------GVVELYDLAESAS 290 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d-~~~~~--w~~~~~~~--~~~h~~~v~v~~sp~~~~la~g~~D---------g~V~vwd~~~~~~ 290 (927)
.++|||+.++..++. +...+ .+...++. ...... ...+|||||+.||..+.. ..|.+.|+++ +.
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 357888766655543 32233 33333322 111111 134899999998877654 2566667665 33
Q ss_pred ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC---cEEEEEccCC
Q 002405 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGC 339 (927)
Q Consensus 291 ~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg---~v~vW~~~~~ 339 (927)
.+.+.. .+.....+|||||+.++-...++ .+.+.++.+.
T Consensus 361 -~~~LT~---------~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 361 -IRRLTA---------NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred -eEECCC---------CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 333332 12233588999999887766443 3556666664
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.82 E-value=4.1e-05 Score=54.74 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.5
Q ss_pred CcccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 445 ~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
...+.+|..+|++++|+|++++||+||.|+.+ +||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999 997
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.78 E-value=0.0003 Score=70.25 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=90.4
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe-eEEEeccccccceecceecCCCCCCcccccccc--------eeE
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 376 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--------~~~ 376 (927)
|+++-.+-+-|--+..++.++.||.+.+.+...-. +.+.....+.+..+....+. + +.+.++. ..+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~-~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRH-G----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeec-c----cEEecCCcceEeecccee
Confidence 55554444555567889999999999999985411 11122111111111111111 1 2333222 334
Q ss_pred EEcCCCceEEEEEcCCcceE--EEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCc-ccccC
Q 002405 377 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQ 451 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~ 451 (927)
.|+.+-.+.+.........| ++-.+ ...++.|+.||.+.+||..+... |. .+..|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 44443322222222112224 22233 45677888999999999876543 54 56689
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCceE-EEEccC
Q 002405 452 NWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 452 ~~~I~~va~sp-dG~~la~ag~dg~i-~wd~~s 482 (927)
..+|+.+-|+| ++..|.++++||.+ +||..+
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999998 68999999999999 999865
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.74 E-value=0.0052 Score=69.44 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=72.7
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
..+.+++.+|.+..+|..+ ++.+-...... +........+..+.-+| ++..+.+++.+|.+..+|..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccC-CCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 4677888899999999877 54433222100 00000000011111122 35567777788999999998887665544
Q ss_pred cccccceecceecCCCCCCccccc-cc-ceeEEEcCCCceEEEEEcCCcceEE-EEe-ccceeeecccCCCeeeeeeeec
Q 002405 347 QISLSSISSPIVKPNQDCKYEPLM-SG-TSMMQWDEYGYRLYAIEEGSSERVL-IFS-FGKCCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~-sg-~~~~~W~~~~~~l~~~~~~~~~~v~-~~~-~~~~~~s~s~d~~~~~w~~~~~ 422 (927)
.. ....+....+ ...+ +. ..+..++..+++++.....-..... ... .+..+..++.++.+.+++...+
T Consensus 269 ~~---~~~~p~~~~~-----~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 269 AS---SYQGPAVDDN-----RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred cC---CccCceEeCC-----EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC
Confidence 21 1112222111 2222 21 2677778776665433211111111 111 1566777778888777765444
No 293
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.74 E-value=0.004 Score=78.80 Aligned_cols=246 Identities=11% Similarity=0.090 Sum_probs=129.2
Q ss_pred EEEEe-CCcEEEEeeecCccceeeeccccee----cC-------------CCCeEEEEEcCCCcEEEEE-ecCCeEEEEe
Q 002405 224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE----LG-------------SGDAVCASIAPEQQILAVG-TRRGVVELYD 284 (927)
Q Consensus 224 ~~~s~-dG~~~~~~~~d~~~~~w~~~~~~~~----~~-------------h~~~v~v~~sp~~~~la~g-~~Dg~V~vwd 284 (927)
+++++ +|+++++.+.++.+..++....... .+ -..+..+++++++..|.++ +.++.|+++|
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 34443 4666666666666666653321110 01 0124588999988765554 4557899999
Q ss_pred ccCCCcceEEEeeecC-C--CCCC-----C-CCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEecccc-----
Q 002405 285 LAESASLIRTVSLYDW-G--YSMD-----D-TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS----- 349 (927)
Q Consensus 285 ~~~~~~~~~~l~~~~~-~--~~~~-----h-~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~----- 349 (927)
..+ ..+.++.+... + ...+ . -..-..++|+| +|...++.+.++.|++|+..++... ++.+.+
T Consensus 653 ~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 653 FVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred cCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 865 34555543110 0 0000 0 01225799999 5667777778899999998776432 222211
Q ss_pred ---------ccceecceecCCCCCCcc-cccccc---eeEEEcCCCceEEEEEcC------------------------C
Q 002405 350 ---------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEG------------------------S 392 (927)
Q Consensus 350 ---------~~~v~s~~~sp~~~~~~~-~l~sg~---~~~~W~~~~~~l~~~~~~------------------------~ 392 (927)
....+.++++|++ . ..++.. +++.|++.++.......+ |
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred CCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1123456777776 3 333222 788888776543211110 0
Q ss_pred cceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe
Q 002405 393 SERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 471 (927)
Q Consensus 393 ~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag 471 (927)
... ++++. ++..++-..++.+++|+...+....+.-.+. .... .. + ...+.-.....++++++|+.+++-+
T Consensus 806 P~G-vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~--~G~~--dG--~-~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 806 PLG-VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK--AGFK--DG--K-ALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred Cce-eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC--cCCC--CC--c-ccccccCCceEEEEeCCCCEEEEEC
Confidence 011 23333 4555555566666666643322111110010 0000 00 0 0011112356799999999888888
Q ss_pred CCceE-EEEccCCc
Q 002405 472 LHGLI-LYDIRQKK 484 (927)
Q Consensus 472 ~dg~i-~wd~~s~~ 484 (927)
.++.| +||+.+++
T Consensus 878 ~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 878 NNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCEEEEEECCCCc
Confidence 88999 99998865
No 294
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.022 Score=64.66 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=50.6
Q ss_pred ceEEEEEecCeEEEEEccC------------eEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCc
Q 002405 22 QQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL 89 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~------------~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg 89 (927)
..+++.+|.|-.+|+..+. .|.|++.. +.++....= .. |.+.++.|+.+ ..|++-+.+|
T Consensus 31 ~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w-----~~-~~iv~~~wt~~-e~LvvV~~dG 101 (410)
T PF04841_consen 31 DYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPW-----DS-GRIVGMGWTDD-EELVVVQSDG 101 (410)
T ss_pred ceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEE-----CC-CCEEEEEECCC-CeEEEEEcCC
Confidence 4567888988888888665 69999885 445555432 22 78899999986 5666777899
Q ss_pred EEEEEEEE
Q 002405 90 YLHIFKVQ 97 (927)
Q Consensus 90 ~l~i~~l~ 97 (927)
.+++|++.
T Consensus 102 ~v~vy~~~ 109 (410)
T PF04841_consen 102 TVRVYDLF 109 (410)
T ss_pred EEEEEeCC
Confidence 99999985
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.68 E-value=0.0003 Score=74.57 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (927)
|-.-+++|+||||++++.++..|..|+|=.....-.+.++--+|..-|+.++.-++ ..++||+ ++++|+..+
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEeccc
Confidence 99999999999999999999999999998887665566655434778888887766 4456555 889999888
Q ss_pred ceEEEEE
Q 002405 383 YRLYAIE 389 (927)
Q Consensus 383 ~~l~~~~ 389 (927)
++++.++
T Consensus 225 gk~L~t~ 231 (390)
T KOG3914|consen 225 GKLLDTC 231 (390)
T ss_pred CCccccc
Confidence 8776544
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.67 E-value=0.00072 Score=75.69 Aligned_cols=74 Identities=24% Similarity=0.450 Sum_probs=59.3
Q ss_pred CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
....+ |+++||+...++.||.||+|.+||... + +.++.. +.=..+.++|+|||..+++|++.|.+.+|
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~k--------a~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAK--------AEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeee--------ecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 34444 999999999999999999999999875 3 222222 23446889999999999999999999999
Q ss_pred EccCCe
Q 002405 335 SVSGCR 340 (927)
Q Consensus 335 ~~~~~~ 340 (927)
|+.-..
T Consensus 327 D~ALsp 332 (545)
T PF11768_consen 327 DMALSP 332 (545)
T ss_pred EeecCc
Confidence 996443
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00031 Score=76.39 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=112.1
Q ss_pred ccccceEEEee-ccC-CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC
Q 002405 129 AEKGLSVSNIV-SDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (927)
Q Consensus 129 ~~~~~~v~~i~-~~~-~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (927)
.++...|++++ -++ ..++.+++|.++..|+...+.....+ . ........
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t------------------------s-----aCQfTY~a 782 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT------------------------S-----ACQFTYQA 782 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc------------------------c-----eeeeEhhh
Confidence 34455555553 234 45788899999999887655432210 0 01122345
Q ss_pred CCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee------cCC--CCeE-EEEEcCCCc-EEEEEec
Q 002405 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS--GDAV-CASIAPEQQ-ILAVGTR 276 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~------~~h--~~~v-~v~~sp~~~-~la~g~~ 276 (927)
|+.+|.++.| ..|-+.++ +.|+.+.+||...+..+ ..| ...+ |+ =|-+.. ++|.++.
T Consensus 783 Hkk~i~~igf----------L~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 783 HKKPIHDIGF----------LADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCSA 849 (1034)
T ss_pred ccCcccceee----------eeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEec-ccCcchheeeeccc
Confidence 6777777764 56666666 66888999997654332 122 2233 33 232334 4555588
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
..+|+++|.+. .+....++.-. .++..+-+++++..|.|+.+|+|-.+|.+.+-|..+|+.+.+.+
T Consensus 850 eSTVKl~DaRs-ce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 850 ESTVKLFDARS-CEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hhhheeeeccc-ccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 89999999987 66555555421 12245668999999999999999999999999999998776654
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.006 Score=69.74 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=43.2
Q ss_pred EEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCc-cEEEEEecCcEEEEEEEEecCc
Q 002405 33 LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 33 lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg-~~Lav~t~dg~l~i~~l~~~~~ 101 (927)
++|++. .+.|.|||.. .+..+.++..+.++.+ ...-+-|.+|+ ..|++-+...++.+|+..++..
T Consensus 81 liAsaD~~GrIil~d~~-~~s~~~~l~~~~~~~q---dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFV-LASVINWLSHSNDSVQ---DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred eEEeccccCcEEEEEeh-hhhhhhhhcCCCcchh---heeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 566664 6789999996 5555565554444432 11224446687 5677778889999999886653
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.57 E-value=0.023 Score=60.76 Aligned_cols=260 Identities=15% Similarity=0.147 Sum_probs=128.8
Q ss_pred eEEEEEecCeEEEEEc-----------cCeEEEeecCCceeEEEEEeeChH-hhhhcccccEEEEcCCccEEEEEe--cC
Q 002405 23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVVT--SS 88 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wspDg~~Lav~t--~d 88 (927)
+-+..||||+.+.+++ .+-|.+||.. +..+.....-..+ ....--.-...++|.||+++.+.. =.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 3366899999777652 1369999995 7766666655543 111111123467888888777743 22
Q ss_pred cEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCcccccee
Q 002405 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (927)
Q Consensus 89 g~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~ 168 (927)
..|-+.|++..+ +...+.+.++. .| .-..++.+..-|.||.+..+..+..-.....
T Consensus 118 ~SVtVVDl~~~k---------------------vv~ei~~PGC~-~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 118 TSVTVVDLAAKK---------------------VVGEIDTPGCW-LI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp EEEEEEETTTTE---------------------EEEEEEGTSEE-EE--EEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred CeEEEEECCCCc---------------------eeeeecCCCEE-EE--EecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 345555554211 11111112210 11 1112356777788998888877743322110
Q ss_pred ecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc---ee
Q 002405 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LA 245 (927)
Q Consensus 169 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~---~w 245 (927)
+.-.|..+.+. -+..-.|....+.....+=+|+++........++ -|
T Consensus 174 -----------~t~~F~~~~dp-------------------~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 174 -----------STKVFDPDDDP-------------------LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp -----------EEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred -----------eccccCCCCcc-------------------cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 01122222210 0111122223333444555666655444433332 34
Q ss_pred eeccc----ceecCCCCeEEEEEcCCCcEEEEEe--------cCC--eEEEEeccCCCcceEEEeeecCCCCCCCCCCee
Q 002405 246 EFIKI----DKELGSGDAVCASIAPEQQILAVGT--------RRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVS 311 (927)
Q Consensus 246 ~~~~~----~~~~~h~~~v~v~~sp~~~~la~g~--------~Dg--~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~ 311 (927)
...+. ..|.. .+.--+++++..+.|-+-- .|+ .|-+||+.+ ++.+.++.. ..++.
T Consensus 224 ~~~t~~e~~~~WrP-GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~ 292 (342)
T PF06433_consen 224 SLLTDAEKADGWRP-GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPID 292 (342)
T ss_dssp ESS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEES
T ss_pred cccCccccccCcCC-cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccc
Confidence 43221 11210 1111477777554433321 233 355666666 667777765 35688
Q ss_pred EEEECCCCC-EEEEE-EcCCcEEEEEccCCeeEEEeccc
Q 002405 312 CIAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 312 ~l~~spdg~-~Lasg-~~Dg~v~vW~~~~~~~~~~l~~~ 348 (927)
+|+.|.|.+ +|.+. ..++.+.+||..+++++.++++-
T Consensus 293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 999999877 66544 45789999999999999988764
No 300
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.56 E-value=0.018 Score=63.21 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=79.1
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeEEEEEcCCCcEEEEEecCC---------------eEEEEecc
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRG---------------VVELYDLA 286 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v~v~~sp~~~~la~g~~Dg---------------~V~vwd~~ 286 (927)
+..||.|++++..- ...+.+|......++ .-|.+.-.+.|||.+++|.+=+..+ .+.+||..
T Consensus 38 ~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehhh-ccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 44578888777433 234667776544332 3455544899999999999865443 48999998
Q ss_pred CCCcceEEEeeecCCCCCCCCCCee-EEEECCCCCEEEEEEcCCcEEEEEccCCe---eEEEeccccccceecceecCCC
Q 002405 287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spdg~~Lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
. +..+..+..... ....+ -+.||-|.+++|=-.. ..+.|.++.+.. ....++ ...+....++|.+
T Consensus 117 s-g~iv~sf~~~~q------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~ 185 (561)
T COG5354 117 S-GMIVFSFNGISQ------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEG 185 (561)
T ss_pred C-ceeEeeccccCC------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhcc---ccceeeEEecCCC
Confidence 7 777777766321 11133 6889999888775543 478999973221 122222 2345555666664
No 301
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0061 Score=69.40 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=77.2
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcce-EEEee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~-~~l~~ 297 (927)
-+++..+++++.|++.|.+.+++-..++.. .+-...+ .+.+|++..++|.|++.|.|.++-+......- ..+..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 444566677777777666665554433222 2223444 77899999999999999999999987622111 11111
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
....|+..|++++||+||..+.+|...|+|..-.+..
T Consensus 119 ----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 ----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ----ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1112788999999999999999999999998887765
No 302
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00032 Score=78.47 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=60.8
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCee-EEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
-+.|||...++|.+..+|.|-++.+. .+.+-++.. |...|+ +++|.|||+.||+|..||+|++-|++.+
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec--cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 78999999999999999999998886 344555554 555666 9999999999999999999999999887
Q ss_pred eeE
Q 002405 340 RLM 342 (927)
Q Consensus 340 ~~~ 342 (927)
..+
T Consensus 95 ~~l 97 (665)
T KOG4640|consen 95 GRL 97 (665)
T ss_pred Cce
Confidence 544
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.47 E-value=0.00065 Score=69.25 Aligned_cols=257 Identities=13% Similarity=0.085 Sum_probs=130.3
Q ss_pred hhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceee-----cCCCCCCCccceeeeEEeecccccccccceEEEee
Q 002405 65 QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV 139 (927)
Q Consensus 65 ~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 139 (927)
.+...+++|.|-.-|.+||+|...|.|.+|.-+....--+ +.+|..+--.+.+. ...+. -..|.-+.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl--eieEK------in~I~w~~ 95 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL--EIEEK------INAIEWFD 95 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc--cHHHH------hhheeeec
Confidence 3456678999999999999999999999997543321001 12222111111111 11111 11122222
Q ss_pred cc-CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCC-CCccccC--------CC-----ceecccc
Q 002405 140 SD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN-GLASVDT--------SG-----AFVSDHK 204 (927)
Q Consensus 140 ~~-~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--------~~-----~~~~~~~ 204 (927)
.. ...+++.+.+.+|.+|..-....... +...+...-.++.+ .+.+..+ .. ..+++..
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~v-------a~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvya 168 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVV-------AENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYA 168 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhh-------hccccccccccccCCCcCCHHHhhcccccccceEEEeccceecc
Confidence 22 35788889999999875432210100 00000000001111 0000000 00 0001111
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce-e-----cCC-----CCeE-EEEEcCC-CcEE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E-----LGS-----GDAV-CASIAPE-QQIL 271 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~-~-----~~h-----~~~v-~v~~sp~-~~~l 271 (927)
..|...|. .+.+.+|...+++ ++|-.+.+|+...... . ..| ...+ +..|+|. ...+
T Consensus 169 NaH~yhiN----------SiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 169 NAHPYHIN----------SISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred ccceeEee----------eeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence 12223333 3445677776653 4566778887653211 0 222 2344 8889996 4456
Q ss_pred EEEecCCeEEEEeccCCCcceE-------EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC-CeeEE
Q 002405 272 AVGTRRGVVELYDLAESASLIR-------TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMS 343 (927)
Q Consensus 272 a~g~~Dg~V~vwd~~~~~~~~~-------~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~-~~~~~ 343 (927)
.-.+..|+|++-|++...-+.. ++.+.....-.+-...|..+.|||+|+++++-.. -++++||+.- ..++.
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 6667889999999974211111 1111111111123456888999999999998776 7999999954 34555
Q ss_pred Eeccc
Q 002405 344 TIRQI 348 (927)
Q Consensus 344 ~l~~~ 348 (927)
++..|
T Consensus 317 Ti~~h 321 (460)
T COG5170 317 TIPMH 321 (460)
T ss_pred eechH
Confidence 55443
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0079 Score=63.98 Aligned_cols=76 Identities=13% Similarity=0.289 Sum_probs=62.1
Q ss_pred ecCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCC
Q 002405 253 ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSR 329 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg 329 (927)
..+|...+ .++|||..+ ++..++.+.+|+|.|+.+ ...+..... | ..+++++|.-|.. ++..|-.+|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec--------c-CCceeeeeccCCcceeEEeccCc
Confidence 36788889 999999876 899999999999999987 444444444 4 7899999998755 777788889
Q ss_pred cEEEEEccC
Q 002405 330 GLTVWSVSG 338 (927)
Q Consensus 330 ~v~vW~~~~ 338 (927)
.|.|+|+..
T Consensus 259 ~VlvyD~R~ 267 (463)
T KOG1645|consen 259 MVLVYDMRQ 267 (463)
T ss_pred eEEEEEccC
Confidence 999999954
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.44 E-value=0.00047 Score=68.83 Aligned_cols=74 Identities=22% Similarity=0.349 Sum_probs=61.6
Q ss_pred CeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEE
Q 002405 258 DAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 258 ~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW 334 (927)
++| +++-+|. ..++++|+.||.+-+||++...-+...++. |+.+++.+-|+| ++..|.++++||.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--------hk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--------hhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 447 8888884 668889999999999999873233344555 999999999999 78999999999999999
Q ss_pred EccCC
Q 002405 335 SVSGC 339 (927)
Q Consensus 335 ~~~~~ 339 (927)
|..+.
T Consensus 252 das~~ 256 (319)
T KOG4714|consen 252 DASTT 256 (319)
T ss_pred cCCCc
Confidence 98763
No 306
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.43 E-value=0.014 Score=63.28 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=92.4
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCC-eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg-~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
.+|...| -..+.-++.-++.|..|| .+-|||.++ + ....+.. .-|.|-+++.+|||+.++++.....+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-~-e~kr~e~--------~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-G-EVKRIEK--------DLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC-c-eEEEeeC--------CccceEEEEEcCCCcEEEEEcCceEE
Confidence 5667778 778888888999999999 899999875 4 4455555 57889999999999999999988888
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCccccccc----c---eeEEEcCCCceEEEEEc
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----T---SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg----~---~~~~W~~~~~~l~~~~~ 390 (927)
-+.|+.++.... +.....+-++...+||++ +.++-+ - .+++++..+++.+.+..
T Consensus 426 ~vididngnv~~-idkS~~~lItdf~~~~ns----r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 426 WVIDIDNGNVRL-IDKSEYGLITDFDWHPNS----RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEEecCCCeeE-ecccccceeEEEEEcCCc----eeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 888998875322 221113457888889987 544422 2 78889999888877654
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0023 Score=73.64 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=98.0
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
.+++ |++++ ++.+|.|+-+|.|++++.+. .. .+... |+.. .-+|.++|||+.||+|.|-+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~--------~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFD--------HSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccc--------cccc------ccCCceEEEecCCCcEEEee
Confidence 4555 66665 56799999999999999864 22 32222 4433 56899999999999999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCee
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTY 415 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~ 415 (927)
+.+.+..+++.-+ ..+.+++++|+-... . .+.+++|+.-| +.
T Consensus 100 l~~~~~~~~~df~--rpiksial~Pd~~~~--------~---------------------------sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 100 LFTDDEITQYDFK--RPIKSIALHPDFSRQ--------Q---------------------------SKQFVSGGMAG-LV 141 (846)
T ss_pred ccCCccceeEecC--CcceeEEeccchhhh--------h---------------------------hhheeecCcce-EE
Confidence 9988877766553 568888888872000 0 11122232222 10
Q ss_pred eee--eeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcE
Q 002405 416 ARQ--VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKW 485 (927)
Q Consensus 416 ~w~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w 485 (927)
+.. ...... +.......++|.++.| .|.++|-++.+|+-+||+.+++-
T Consensus 142 L~er~wlgnk~--------------------~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~ 191 (846)
T KOG2066|consen 142 LSERNWLGNKD--------------------SVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQR 191 (846)
T ss_pred EehhhhhcCcc--------------------ceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccce
Confidence 000 000011 1122334578999988 59999999999988999988763
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.00062 Score=70.59 Aligned_cols=120 Identities=10% Similarity=0.102 Sum_probs=86.7
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCC----CcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcE
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGL 331 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v 331 (927)
.-| +..|.-.+.++..|+.+|.|-++|++.. +.+...+. |...|+++.--. ++++|.+.+.+|+|
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCce
Confidence 345 7788888999999999999999999862 12333332 888999988766 78899999999999
Q ss_pred EEEEccCCee---EEEeccccccceecceecCCCCC-Ccccccccc---eeEEEcCCCceEEEEEc
Q 002405 332 TVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDC-KYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 332 ~vW~~~~~~~---~~~l~~~~~~~v~s~~~sp~~~~-~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (927)
++||..--++ +.+.+|| |+..+.-|.... ....+++++ -.++|..+.++++.+.+
T Consensus 324 kLyD~R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eEeeehhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9999965555 7788887 444444333321 113444444 67889999888887764
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.33 E-value=0.091 Score=63.78 Aligned_cols=276 Identities=12% Similarity=0.057 Sum_probs=134.5
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
..+++.|--+..-+.++..+|.|.+-|..+ .. +. .-+. -.++|.+++||||+..+|....++++-+-+-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et-~~-~e-ivg~-------vd~GI~aaswS~Dee~l~liT~~~tll~mT~- 138 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPET-LE-LE-IVGN-------VDNGISAASWSPDEELLALITGRQTLLFMTK- 138 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccc-cc-ee-eeee-------ccCceEEEeecCCCcEEEEEeCCcEEEEEec-
Confidence 334899999999999999999999987765 21 22 2221 4678999999999999999988777755432
Q ss_pred CCeeE--EEeccc--cccceecceecCCCCCCcccccccceeEEEcCCCceEEEE-EcCCcceEEEEec---cceeee--
Q 002405 338 GCRLM--STIRQI--SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAI-EEGSSERVLIFSF---GKCCLN-- 407 (927)
Q Consensus 338 ~~~~~--~~l~~~--~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~-~~~~~~~v~~~~~---~~~~~s-- 407 (927)
.-.++ ..+... ..+.+-.+-|-... .++-.+++..+.-.....+-..- ..-++.. ..+++ |+.++.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~-~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGSEGRQAARQKIEKEKALEQIEQDDHK-TSISWRGDGEYFAVSF 214 (1265)
T ss_pred cccchhccccccccccccccceecccccc---eeeecchhhhcccccccccccccchhhccCC-ceEEEccCCcEEEEEE
Confidence 11111 111000 00000001110000 00000000000000000000000 0000000 11222 322222
Q ss_pred --cccC-CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC---CceE-EEEc
Q 002405 408 --RGVS-GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-LYDI 480 (927)
Q Consensus 408 --~s~d-~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~---dg~i-~wd~ 480 (927)
...+ ..+++|+-. +.- +....|.....| +++|-|.|..+|+-.. |+.| +|..
T Consensus 215 ~~~~~~~RkirV~drE-g~L---------------ns~se~~~~l~~-----~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GAL---------------NSTSEPVEGLQH-----SLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred EeccCCceeEEEeccc-chh---------------hcccCccccccc-----ceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 1222 567777743 111 011124444443 4899999999997644 4445 8887
Q ss_pred cCCcEEeeCCccceeeeEEEEEEeeCC--EEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCc-cEEEEccCC-EE
Q 002405 481 RQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK-PIVMDVYED-YI 556 (927)
Q Consensus 481 ~s~~w~~f~~~~~e~~~~v~~~~W~~~--~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~l 556 (927)
+.-+-..|.-...++...|.+++|+.+ .|.+. ........+++|...+.+= -+.....+|.. .+..+|... .|
T Consensus 274 NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~--~~~~e~~~v~lwt~~NyhW-YLKq~l~~~~~~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 274 NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV--TSNLENSLVQLWTTGNYHW-YLKQELQFSQKALLMWDPVTEKTL 350 (1265)
T ss_pred CCccccccccCCcccccchheeeecCCCCceeee--ecccccceEEEEEecCeEE-EEEEEEeccccccccccCCCceeE
Confidence 665555554444444444889999844 44431 1112334589987742210 11122333432 234566544 36
Q ss_pred EEEEcCCeEEEEEEEE
Q 002405 557 LVTYRPFDVHIFHVKL 572 (927)
Q Consensus 557 ~v~~~d~~i~l~~~~~ 572 (927)
.+...+|...++++.-
T Consensus 351 ~v~~~sG~~~v~~~~~ 366 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDFAW 366 (1265)
T ss_pred EEEecCCcEEEEEEEE
Confidence 6666788888877754
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.30 E-value=0.025 Score=59.83 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=59.4
Q ss_pred EEEEcC-CCcEEEEEecCCe-EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-----cCCcEEE
Q 002405 261 CASIAP-EQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-----KSRGLTV 333 (927)
Q Consensus 261 ~v~~sp-~~~~la~g~~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-----~Dg~v~v 333 (927)
.++.+| +...+|.+-.-|+ ..+||..+ +.....+...+-.--.+| -.|||||++|.+.- ..|.|-|
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEE
Confidence 477888 6778888888886 57899887 665555543110000113 57999999998853 3478999
Q ss_pred EEcc-CCeeEEEeccccccceecceecCCC
Q 002405 334 WSVS-GCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 334 W~~~-~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
||+. +-+.+..+..++.. -..+.+.|++
T Consensus 82 yd~~~~~~ri~E~~s~GIG-PHel~l~pDG 110 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIG-PHELLLMPDG 110 (305)
T ss_pred EECcCCcEEEeEecCCCcC-hhhEEEcCCC
Confidence 9998 54555555554322 1234455555
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.03 Score=65.28 Aligned_cols=137 Identities=19% Similarity=0.285 Sum_probs=87.9
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEEeeecCCCCCCCCCCeeEEEECCCCCE-EEEEEcCCcEEEE
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVW 334 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~-Lasg~~Dg~v~vW 334 (927)
.++ ++++|.+-+.+|+|-.||.|..+.-+-.. +-.+. .+...-.++|+.+++..||+. +.++.. ..|.++
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~------~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y 198 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ------DYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLY 198 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce------eeeccCCCCceeeEEecCCceeEEEEec-ceeEEE
Confidence 445 89999999999999999999998743200 00111 111114679999999999987 444443 579999
Q ss_pred EccCCee-EEEeccccccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEEEc-CCcceEEEEecccee
Q 002405 335 SVSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGKCC 405 (927)
Q Consensus 335 ~~~~~~~-~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~-~~~~~v~~~~~~~~~ 405 (927)
++.+..+ .+.+..+ ..++++..+++.. .+.+.+++ -+-+++..+.+.-.++. ||......+++|-.+
T Consensus 199 ~l~gr~p~~~~ld~~-G~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L 268 (933)
T KOG2114|consen 199 SLSGRTPSLKVLDNN-GISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLL 268 (933)
T ss_pred EecCCCcceeeeccC-CccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEE
Confidence 9986552 3445555 4456777776654 13555554 66778877655444444 776666666655433
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.14 E-value=0.12 Score=58.75 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHHHhhhccccc-ccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCc------chhHHHHHHHHHHHHhhc
Q 002405 842 LNVVVSVARKTD-GRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGP------AVSQYSALRLLQATLDEC 914 (927)
Q Consensus 842 l~ivv~c~RK~e-~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~------~~~~~~~~~ll~~al~~~ 914 (927)
|++...+|++++ ...|+.| -+.+|+.|+++.|-.++-=..++++. ..+++.-.+|.+.|.+++
T Consensus 334 L~~A~~~a~~~~~~~~W~~L----------g~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 334 LDIALEIAKELDDPEKWKQL----------GDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHCCCCSTHHHHHHH----------HHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCcHHHHHHH----------HHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777778888887 5577765 45588888888887776544444442 245677778888888888
Q ss_pred cHhhHHH
Q 002405 915 LYELAGE 921 (927)
Q Consensus 915 ~~~l~~e 921 (927)
++..|+-
T Consensus 404 ~~n~af~ 410 (443)
T PF04053_consen 404 DINIAFQ 410 (443)
T ss_dssp -HHHHHH
T ss_pred CHHHHHH
Confidence 8776653
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.13 E-value=0.011 Score=60.62 Aligned_cols=282 Identities=14% Similarity=0.145 Sum_probs=139.8
Q ss_pred EEEEEecCeEEEEEc-cCeEEEeecCCce--eE-----EEEEe---eChHhhhhcccccEEEEcCCcc--EEEEEecCcE
Q 002405 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHK--VR-----LGKYK---RDSESVQREGENLQAVWSPDTK--LIAVVTSSLY 90 (927)
Q Consensus 24 iv~fs~dg~lla~~~-~~~v~IW~~~~~~--~~-----l~~~~---r~~~sl~~~G~~~~v~wspDg~--~Lav~t~dg~ 90 (927)
.|-|-.-|.++|++. .+.|.++--.+.. .- ...+. .-.++++-...+..+.|-.|+. ...+.|.|.+
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt 110 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT 110 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence 356777789999875 4678887653211 00 00010 0123344445667888877764 3667788999
Q ss_pred EEEEEEEecCcee------ecCCCCCCCccceee---------------eEEeecccccccccceEEEeeccC-CeEEEE
Q 002405 91 LHIFKVQITEKSI------QIGGKQPSGLFFIKI---------------SLVLNEQLPFAEKGLSVSNIVSDN-KHMLLG 148 (927)
Q Consensus 91 l~i~~l~~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~ 148 (927)
|++|.+-....+. ..+.+.+.+.++.+. ...+ .++....+.-.+.+++.+. .+.++.
T Consensus 111 iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p-~rvyaNaH~yhiNSiS~NsD~et~lS 189 (460)
T COG5170 111 IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP-CRVYANAHPYHINSISFNSDKETLLS 189 (460)
T ss_pred eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc-ceeccccceeEeeeeeecCchheeee
Confidence 9999986432211 111111111111111 0000 1111122233445565554 345555
Q ss_pred ecCCcEEEEecCCccc-cceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcc-eEEEE
Q 002405 149 LSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVL 226 (927)
Q Consensus 149 ~~dg~i~~~~w~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~~~~ 226 (927)
.++-.|.+ |+.+.. +.+.+ +..-+.+ ..+-..-|++.+|+|.+. .+..-
T Consensus 190 aDdLrINL--Wnl~i~D~sFnI------------VDiKP~n---------------meeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 190 ADDLRINL--WNLEIIDGSFNI------------VDIKPHN---------------MEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred ccceeeee--ccccccCCceEE------------EeccCcc---------------HHHHHHHHhhcccCHhHcceEEEe
Confidence 55556655 443321 22211 0000000 001123466667877764 33333
Q ss_pred EeCCcEEEEeee-----cCccceee----ecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEe
Q 002405 227 YSNGQLMSCSVS-----KKGLKLAE----FIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 227 s~dG~~~~~~~~-----d~~~~~w~----~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
++.|.+-+.... |...++.. .....-..+....+ .+.|+++|+++++-.- -+|++||+.....++.+..
T Consensus 241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 444544433221 11111110 00000012234456 7899999999998543 5899999987666777664
Q ss_pred eecCC---CC-CCCCCCe---eEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 297 LYDWG---YS-MDDTGPV---SCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 297 ~~~~~---~~-~~h~~~V---~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
...-. .. .-....| ..+.||-|.+.+.+|+..+..-++-+
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 41100 00 0012223 45889999999999998877777754
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0035 Score=72.23 Aligned_cols=148 Identities=17% Similarity=0.286 Sum_probs=94.9
Q ss_pred eEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEE
Q 002405 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (927)
Q Consensus 134 ~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (927)
.++|.+.....++.|+.+|.+++..-++.....+ .+...
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~--------------------------------------~~s~~--- 79 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNF--------------------------------------DHSSS--- 79 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCcccccc--------------------------------------ccccc---
Confidence 3456677788999999999999887665441111 00000
Q ss_pred EEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCC-----CcEEEEEecCCeEEEEec
Q 002405 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPE-----QQILAVGTRRGVVELYDL 285 (927)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~-----~~~la~g~~Dg~V~vwd~ 285 (927)
.-+|.++++++.||++.+-...+.+.. ..-..++ +++++|+ .+.+++|+.-| +.++.-
T Consensus 80 -------------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er 145 (846)
T KOG2066|consen 80 -------------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER 145 (846)
T ss_pred -------------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence 234666666666665554443333221 1224566 9999998 46799999988 777764
Q ss_pred cCCCcceE-EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 286 AESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 286 ~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
.--+.... .++. -.|+|.++.|. |.++|=++++ +|+|+|+..++.+..++.
T Consensus 146 ~wlgnk~~v~l~~--------~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 146 NWLGNKDSVVLSE--------GEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred hhhcCccceeeec--------CccceEEEEec--CcEEEEecCC-CcEEEeccccceeeccCC
Confidence 32111111 2333 57999999996 7788888765 899999988876665554
No 315
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.07 E-value=0.36 Score=54.84 Aligned_cols=51 Identities=20% Similarity=0.433 Sum_probs=38.7
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
.|++|+.. |..+.++.- ..+.+.++.|+.+..++ +-..||.++++|+.|..
T Consensus 62 ~I~iys~s--G~ll~~i~w--------~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPW--------DSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC--CCEeEEEEE--------CCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce
Confidence 58888875 566666555 34899999999875555 55578999999998765
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.02 E-value=0.13 Score=54.47 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=42.5
Q ss_pred CCCCeE-EEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 255 GSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.-...+ +|++++++.++|+.| ..|.+.+||..+ +..+..... ..+..++-.+++ +++|.+.
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l----------~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeecccc----------CceeeeeecCCc-eEEeCCC
Confidence 345677 999999999886655 567899999987 766554433 335667777777 5555443
No 317
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0025 Score=71.51 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=72.6
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEecc
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~ 286 (927)
...+..++|+|.+..++..+.+|.+++...+ --++|+...+ + .+.+ +++|.|||++||+|-.||+|++-|+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p----~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIP----G-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCC----C-CccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 3457888999999999999999999887776 5678887643 1 3444 99999999999999999999999999
Q ss_pred CCCcceEEEeeecCCCCCCCCCCeeEEEECC
Q 002405 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (927)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp 317 (927)
+ +..+..... .-..+|.++-|+|
T Consensus 93 ~-~~~l~~~~~-------s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 K-GGRLVSFLF-------SVETDISKGIWDR 115 (665)
T ss_pred C-CCceecccc-------ccccchheeeccc
Confidence 8 544433111 0345678888874
No 318
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.90 E-value=0.14 Score=53.84 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=75.1
Q ss_pred EEEEeCCcEEEEeeecCcc------ceeeeccc-ce--e-cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEeccCCCcce
Q 002405 224 FVLYSNGQLMSCSVSKKGL------KLAEFIKI-DK--E-LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLI 292 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~------~~w~~~~~-~~--~-~~h~~~v~v~~sp~~~~la-~g~~Dg~V~vwd~~~~~~~~ 292 (927)
+++.++|+++++....... ++|..... +. . .+-..+-.++|+|+++.|. +-+..+.|..|+++..+..+
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence 4457888877776643221 12222111 11 1 1222233899999998664 66778899999987533312
Q ss_pred ---EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceeccee
Q 002405 293 ---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 293 ---~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
+.+.... .-.+..-.+++.++|+..++.+..+.|.+++.. +++...+.-. ...+++++|
T Consensus 171 ~~~~~~~~~~-----~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 171 SNRRVFIDFP-----GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAF 232 (246)
T ss_dssp EEEEEEEE-S-----SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEE
T ss_pred eeeeeEEEcC-----CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEE
Confidence 2221100 012346789999999999998888999999998 5566666544 345666676
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0011 Score=76.21 Aligned_cols=189 Identities=11% Similarity=0.073 Sum_probs=114.0
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C-c
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R-G 330 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g-~ 330 (927)
..|+... |++|+-+.+.|++|+-.|.|++|++.+ |........ |..+|+-+.=|-||..+.+.+.- . -
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc--------H~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC--------HQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc--------cccccccccccCCcceeeeeccccCch
Confidence 3455555 999999999999999999999999998 665555556 99999999999999977665432 2 4
Q ss_pred EEEEEccC-CeeEEEeccccccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEEEcCCcceEEEEeccceeeec
Q 002405 331 LTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNR 408 (927)
Q Consensus 331 v~vW~~~~-~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~ 408 (927)
..+|+... +...+++.+. .++.|+... ....+.+.. ...++|..++..+.+.-. .....++.+.+++-
T Consensus 1169 saLW~~~s~~~~~Hsf~ed-----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt---~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDED-----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLT---DTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHHhccccccCcccccccc-----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcC---cchhhhhhcccccc
Confidence 68898843 3344555442 345555432 112222222 667888887765544211 12333334455555
Q ss_pred ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeec--CcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCC
Q 002405 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL--PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK 483 (927)
Q Consensus 409 s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~ 483 (927)
+++-+..+|+- ..|..... ...|..-+. --.-.|+|+|..+++-+. +||+++-
T Consensus 1239 sP~D~LIlndG-----------------vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINSE----IwD~RTF 1293 (1516)
T KOG1832|consen 1239 SPCDTLILNDG-----------------VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINSE----IWDMRTF 1293 (1516)
T ss_pred CCCcceEeeCc-----------------eeeeeccHHHHhhhhhhee-cccccccCCCceEEeech----hhhhHHH
Confidence 65555444331 12221110 111211111 122579999999987653 7998763
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0042 Score=66.76 Aligned_cols=215 Identities=11% Similarity=0.123 Sum_probs=126.7
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEeccC-CC-cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcE
Q 002405 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAE-SA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGL 331 (927)
Q Consensus 255 ~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~-~~-~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v 331 (927)
-|.+.+.-.+-...+++.+++-||.++.|.-.. .+ +.+..+.. |-+.|.+++-|-||..++|.+. |..+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra--------HL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA--------HLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH--------HHHHHHhhhccccceeEeeccCcccce
Confidence 366666444555678999999999999998543 11 22334444 8899999999999999999887 9999
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCccccc----ccceeEEEcCCCc--eEEEEEcCCcceEEEEec---c
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM----SGTSMMQWDEYGY--RLYAIEEGSSERVLIFSF---G 402 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~----sg~~~~~W~~~~~--~l~~~~~~~~~~v~~~~~---~ 402 (927)
+++|+..-..+.-++-.-.-..-....+|...- ..++ ....+.+.|..+. +....-.-|..+|..+.. +
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eEEEeeccchhhhcccccCCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 999997643332221100000001111111100 0111 1114555665432 233333447777754444 7
Q ss_pred ceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEE--EeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL--HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 403 ~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
+.++|....|.+..|.....-+. .+ ....|. +..-...+........++.|||+|..+++-+.|..+ +++
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qf---Pr----~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQF---PR----TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cceeeccccceeEeecCCCcccC---cc----ccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 88888888888999985420000 00 001111 000011112223446789999999999999999999 999
Q ss_pred ccCCcEE
Q 002405 480 IRQKKWR 486 (927)
Q Consensus 480 ~~s~~w~ 486 (927)
..+|+..
T Consensus 230 ~KtGklv 236 (558)
T KOG0882|consen 230 FKTGKLV 236 (558)
T ss_pred eccchhh
Confidence 9998753
No 321
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.75 E-value=0.0036 Score=43.18 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.6
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
|.+.|.+++|+|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 889999999999999999999999999996
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.68 E-value=0.66 Score=52.65 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=43.2
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
+..+.+++.+|.+..+|.++ ++.+-+... .+.+.+ +| .+..+.++..++.+..+|..+|+...+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-GEVAWQTKV---------AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-CCCcccccC---------CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 45667788999999999887 655443332 111111 12 2345666777889999999888877666
Q ss_pred c
Q 002405 346 R 346 (927)
Q Consensus 346 ~ 346 (927)
.
T Consensus 187 ~ 187 (394)
T PRK11138 187 N 187 (394)
T ss_pred c
Confidence 4
No 323
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.63 E-value=0.051 Score=48.16 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=61.3
Q ss_pred EEEeCCc-EEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 225 ~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
-+..||+ -++++++|..+++++......-....+.+ ++.-... ..+|.|.++|+|-+|+-.. +.++.+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-----RlWRiK---- 78 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-----RLWRIK---- 78 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----eeeeec----
Confidence 3445554 78889999999998765432112223444 6655555 6699999999999998532 223321
Q ss_pred CCCCCCCeeEEEECC---CCC-EEEEEEcCCcEE
Q 002405 303 SMDDTGPVSCIAWTP---DNS-AFAVGWKSRGLT 332 (927)
Q Consensus 303 ~~~h~~~V~~l~~sp---dg~-~Lasg~~Dg~v~ 332 (927)
.+..+.++++.. ||. -|++||.+|.|-
T Consensus 79 ---SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 ---SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 133467776654 444 799999998774
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.58 E-value=0.25 Score=60.21 Aligned_cols=236 Identities=13% Similarity=0.133 Sum_probs=112.6
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccc--ccccceeEEEcCCCce
Q 002405 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP--LMSGTSMMQWDEYGYR 384 (927)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~--l~sg~~~~~W~~~~~~ 384 (927)
.+.|.++.|-.|+..++.+..+|.|.+-|..+.... +-|.-..+|.+..++||+ +. +++|....+.......
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~De----e~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDE----ELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCC----cEEEEEeCCcEEEEEecccc
Confidence 368999999999999999999999999988765322 222224557777777776 33 2333211111111111
Q ss_pred EEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccc----cCCCceEEEEE
Q 002405 385 LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI----SQNWPVQHVAA 460 (927)
Q Consensus 385 l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~I~~va~ 460 (927)
++..-.-+.+. ..-...+++++...-..+.-..+... ..-. ..+.+.. -++. =.+++|
T Consensus 142 ~i~E~~L~~d~----~~~sk~v~VGwGrkeTqfrgs~gr~~---------~~~~----~~~ek~~~~~~~~~~-~~~IsW 203 (1265)
T KOG1920|consen 142 PIAEKPLDADD----ERKSKFVNVGWGRKETQFRGSEGRQA---------ARQK----IEKEKALEQIEQDDH-KTSISW 203 (1265)
T ss_pred chhcccccccc----ccccccceecccccceeeecchhhhc---------cccc----ccccccccchhhccC-CceEEE
Confidence 11100000000 00001122222211100000000000 0000 0011111 1111 246899
Q ss_pred ccCCCEEEEE-----eCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 002405 461 SKDGMFLAVA-----GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (927)
Q Consensus 461 spdG~~la~a-----g~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~ 534 (927)
--||+|+|+. .....+ +||.. |.. ..........-..++|.+.....+..-...++..|.+|.+..|.-+
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drE-g~L---ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDRE-GAL---NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEeccc-chh---hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 9999999983 322455 89876 332 1212222223346899865443333333445558999999644333
Q ss_pred ceeEEEecCC---ccEEEEccCCEEEEEEc---CCeEEEEEE
Q 002405 535 SLLCRKSLLA---KPIVMDVYEDYILVTYR---PFDVHIFHV 570 (927)
Q Consensus 535 ~~~~~~~~~~---~~~~~~~~~~~l~v~~~---d~~i~l~~~ 570 (927)
.+....+... .-+..+...+.|++.+. ...+.+|..
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 3322232222 23567888888888443 334777754
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.53 E-value=0.015 Score=67.22 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=59.1
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
++++|+|..-.||.|..-|.+.+|...+ +..++... .|+.++.-+.|||||..|.++..=|.+.+|...
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3789999999999999999999999765 33343333 299999999999999999999999999999875
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=0.0061 Score=63.52 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=76.7
Q ss_pred EeCCcEEEEeeecCccceeeeccc---cee----cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcc---eEE
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASL---IRT 294 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~---~~~----~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~---~~~ 294 (927)
...+.+++.|...+.|...|+... ..| .-|..++ |+..-. +++.|.+.+-+|+|++||.+. .++ +.+
T Consensus 261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~q 339 (425)
T KOG2695|consen 261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQ 339 (425)
T ss_pred cccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceee
Confidence 344566666666666666665432 122 4577888 776655 677788889999999999986 444 555
Q ss_pred EeeecCCCCCCCCCCeeEE--EECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 295 VSLYDWGYSMDDTGPVSCI--AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l--~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
..+ |...-.-+ -..+....++++++|...++|++..+.+++++..
T Consensus 340 YeG--------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 340 YEG--------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eec--------ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 555 53322212 2234556788899999999999999999998864
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.45 E-value=0.65 Score=51.82 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=47.3
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHh----------h-hh-cccccEEEEcCCccEEEEEe-c
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES----------V-QR-EGENLQAVWSPDTKLIAVVT-S 87 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~s----------l-~~-~G~~~~v~wspDg~~Lav~t-~ 87 (927)
......+||||+.+|.+.++.|.+++.. .+ ....++..... . ++ .+...++.|||||++||... .
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLA-TG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESST-TS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeecCCCeeEEEecCceEEEECC-CC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 5667899999999999999999999874 33 22222222100 1 12 45567899999999998865 3
Q ss_pred CcEEEEEEEE
Q 002405 88 SLYLHIFKVQ 97 (927)
Q Consensus 88 dg~l~i~~l~ 97 (927)
+..++.+.+.
T Consensus 122 ~~~v~~~~~~ 131 (353)
T PF00930_consen 122 EREVPEYPLP 131 (353)
T ss_dssp -TTS-EEEEE
T ss_pred CcCCceEEee
Confidence 4456666554
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.31 E-value=0.77 Score=52.08 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=40.8
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC-CCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD-TGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h-~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
..+..++.+|.+...|..+ ++.+-....... ...+ ......+.-+| .+..+..++.+|.+...|..+++...+.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~--~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQP--TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccC-ChhhheeccccC--CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 3466678889998888877 554332221000 0000 00111122233 3445666677899999999888765543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.5 Score=55.62 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=55.1
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
..+| .+++..+++.+.....-..|.+|.+.. ..+ ..++.. |..+++|.+|++-...+++|+. ..+.+|
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~~-e~l~fY 240 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDN--------NGISLNCSSFSDGTYQFICAGS-EFLYFY 240 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeecc--------CCccceeeecCCCCccEEEecC-ceEEEE
Confidence 4556 999999988744445556799999984 332 333444 7889999999986554555544 489999
Q ss_pred EccCCeeEEEec
Q 002405 335 SVSGCRLMSTIR 346 (927)
Q Consensus 335 ~~~~~~~~~~l~ 346 (927)
+..+.....++.
T Consensus 241 ~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 241 DSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceeeeec
Confidence 998765544544
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.10 E-value=0.027 Score=63.50 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=53.6
Q ss_pred CceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
.....++||+.+.|+.+ .|++|.+||.... +....+..- ..+.++|+|||..++||+..|.+.+||+..+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~------~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEF------IPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCC---eeeeeeecc------cceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46667889997766655 7999999999633 233333221 1358999999999999999999999999855
Q ss_pred C
Q 002405 100 E 100 (927)
Q Consensus 100 ~ 100 (927)
.
T Consensus 332 p 332 (545)
T PF11768_consen 332 P 332 (545)
T ss_pred c
Confidence 4
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.048 Score=58.98 Aligned_cols=246 Identities=12% Similarity=0.083 Sum_probs=146.3
Q ss_pred eCCcEEEEeeecCccceeeecc--ccee----cCCCCeE-EEEEcCCCcEEEEEec-CCeEEEEeccCCCcceEEEeeec
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIK--IDKE----LGSGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~--~~~~----~~h~~~v-~v~~sp~~~~la~g~~-Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
.-.++..+++-|+..+.|.-.. +... ..|...+ +++.|-++.++++++. |..+|++|+.+ -..+.-++...
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn-~DminmiKL~~ 96 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN-FDMINMIKLVD 96 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec-cchhhhccccc
Confidence 4456788888888888886433 1111 4566777 8899999999999888 99999999986 33332222211
Q ss_pred CCCCCCCCCCeeEEEECC-CC-CEEEEEE-cCCcEEEEEccCCe-eEEEeccccccceecceecCCCCCCcccccccc--
Q 002405 300 WGYSMDDTGPVSCIAWTP-DN-SAFAVGW-KSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-dg-~~Lasg~-~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
-.+.+.. -.+| |- ..+|++. +++.+.|+|-.+.. ....+.+-|.++|....+.|.+ ....|..
T Consensus 97 ------lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~----Ds~vSiD~~ 165 (558)
T KOG0882|consen 97 ------LPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG----DSAVSIDIS 165 (558)
T ss_pred ------CCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc----cceeecccc
Confidence 1222222 1222 21 1444444 45889999986543 4555666558899999998887 4444332
Q ss_pred -eeEEEcCCC-ce-----EEEEEcC---------Ccce--EEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecC--
Q 002405 374 -SMMQWDEYG-YR-----LYAIEEG---------SSER--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE-- 432 (927)
Q Consensus 374 -~~~~W~~~~-~~-----l~~~~~~---------~~~~--v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~-- 432 (927)
.+..|.+++ ++ +....+. .... -..+++ ++.+.+-+.|..++.+.+..++....+-...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 678898874 11 1111110 0111 145555 8888888899999998887665321111110
Q ss_pred --CCCcce--EEEeec------CcccccCCC-ceEEEEEccCCCEEEEEeCCceEEEEccCCcE
Q 002405 433 --DTDELK--ILHLNL------PVSYISQNW-PVQHVAASKDGMFLAVAGLHGLILYDIRQKKW 485 (927)
Q Consensus 433 --~~~~~~--w~~~~~------~~~~~~~~~-~I~~va~spdG~~la~ag~dg~i~wd~~s~~w 485 (927)
..+... ..+..+ -..+..|+. +-..+.|...|++|.-|+-=|.-+.++.++..
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v 309 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTV 309 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeE
Confidence 001100 011110 111222322 33568899999999999988877888887764
No 332
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.08 E-value=0.3 Score=50.79 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 266 p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
+++..+.+++.++.+..||..+ ++.+-.... .+++.... ..++..+.++..|+.+..+|..+|+...+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~---------~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDL---------PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT-SEEEEEEEC---------SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCC-CCEEEEeec---------ccccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 3555666668999999999987 765555443 11111111 224556667778889999998888877763
Q ss_pred -cccc-ccc-eecceecCCCCCCcccccc--cceeEEEcCCCceEEEEEcC
Q 002405 346 -RQIS-LSS-ISSPIVKPNQDCKYEPLMS--GTSMMQWDEYGYRLYAIEEG 391 (927)
Q Consensus 346 -~~~~-~~~-v~s~~~sp~~~~~~~~l~s--g~~~~~W~~~~~~l~~~~~~ 391 (927)
.... ... .........+ ...++. ...+...++.+++++.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVDG---DRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EE-SSCTCSTB--SEEEEET---TEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccccccccccccCceEec---CEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 3220 000 0111111111 022222 23777888887777555433
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.03 E-value=1.4 Score=45.85 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=40.0
Q ss_pred cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
.+|+|..||..+ ++.+-...... ...+.+ +. ..+++..+.+++.++.+..||..+|+...+..
T Consensus 1 ~~g~l~~~d~~t-G~~~W~~~~~~-----~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 1 DDGTLSALDPRT-GKELWSYDLGP-----GIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp -TSEEEEEETTT-TEEEEEEECSS-----SCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCCEEEEEECCC-CCEEEEEECCC-----CCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 378999999877 66554443210 012222 11 33466777777889999999998888766554
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.94 E-value=0.12 Score=58.52 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=61.7
Q ss_pred EEEecCeEEEEE---ccC--eEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEE-ecCcEEEEEEEEec
Q 002405 26 YFKVNNGLLLIA---SPC--HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQIT 99 (927)
Q Consensus 26 ~fs~dg~lla~~---~~~--~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~-t~dg~l~i~~l~~~ 99 (927)
.++||++.++-. ..+ .+.+++.+..... ..+...|.+..-+|||||++||.. ..+|...||-.+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccc--------eeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 578888866644 233 4888888622111 112235777889999999987764 46677777655433
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCC---cEEEEecCCcc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG---SLYSISWKGEF 163 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg---~i~~~~w~~~~ 163 (927)
..... .+... .+.+ .--++++|++.++-+++.+ .|.++++++..
T Consensus 271 ~~~~~----------------~Lt~~---~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 271 GKNLP----------------RLTNG---FGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCcce----------------ecccC---Cccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 22100 00000 0111 1236788898888776643 45555555543
No 335
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.92 E-value=5.9 Score=47.92 Aligned_cols=81 Identities=20% Similarity=0.056 Sum_probs=45.5
Q ss_pred cccccEEEEcCCc------cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeec
Q 002405 67 EGENLQAVWSPDT------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (927)
Q Consensus 67 ~G~~~~v~wspDg------~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 140 (927)
.+++.|+.++|-| +.+|+|..+..+.+-....+...++......+. -.+.--.+++..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~----------------iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEI----------------IPRSILLTTFEG 593 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCc----------------cchheeeEEeec
Confidence 4678899999753 368888877766554433222111111001110 011111245555
Q ss_pred cCCeEEEEecCCcEEEEecCCcc
Q 002405 141 DNKHMLLGLSDGSLYSISWKGEF 163 (927)
Q Consensus 141 ~~~~l~v~~~dg~i~~~~w~~~~ 163 (927)
|..+|++++.||.+..+..+...
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEccc
Confidence 67899999999998877666433
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=0.0097 Score=68.96 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=91.4
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-----eeEEEcC
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWDE 380 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-----~~~~W~~ 380 (927)
|+..-+|++||-+.++|++|+..|.|+++++.+|....+...| .+.++-+.-+.++ ..+.+.+ -..+|+.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg----s~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG----STQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc----ceeeeeccccCchHHHhcc
Confidence 8888999999999999999999999999999999887777777 7778887777776 4333322 3457876
Q ss_pred CC-ceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccc----ccCCCc
Q 002405 381 YG-YRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY----ISQNWP 454 (927)
Q Consensus 381 ~~-~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~~~ 454 (927)
.. +.....+.+ +..+.|+- ...-+-|.......++|+.++.. ..+| .+.+..
T Consensus 1175 ~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--------------------l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE--DKAVKFSNSLQFRALGTEADDALLYDVQTCSP--------------------LQTYLTDTVTSSYS 1232 (1516)
T ss_pred ccccCccccccc--cceeehhhhHHHHHhcccccceEEEecccCcH--------------------HHHhcCcchhhhhh
Confidence 53 222222221 11122221 11111222222345566554432 1222 122333
Q ss_pred eEEEEEccCCCEEEEEeCCceEEEEccCC
Q 002405 455 VQHVAASKDGMFLAVAGLHGLILYDIRQK 483 (927)
Q Consensus 455 I~~va~spdG~~la~ag~dg~i~wd~~s~ 483 (927)
=.++.|||+.+.+. .|| ++||++..
T Consensus 1233 ~n~a~FsP~D~LIl---ndG-vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL---NDG-VLWDVRIP 1257 (1516)
T ss_pred ccccccCCCcceEe---eCc-eeeeeccH
Confidence 46789999999886 555 56998764
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.80 E-value=0.74 Score=51.34 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=100.8
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecccccccee-c
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS-S 355 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~-s 355 (927)
.+...|||+.+ +. ...+.. ..+.+....|||||+.+|-... +.|.+++..++... .+...+...+. .
T Consensus 22 ~~~y~i~d~~~-~~-~~~l~~--------~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~-~lT~dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIET-GE-ITPLTP--------PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQET-QLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTT-TE-EEESS---------EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEE-ESES--TTTEEES
T ss_pred ceeEEEEecCC-Cc-eEECcC--------CccccccceeecCCCeeEEEec-CceEEEECCCCCeE-EeccccceeEEcC
Confidence 45688899886 42 222222 2457889999999999998875 78999998777433 23222111111 1
Q ss_pred ceecCCCCCCcccccccceeEEEcCCCceEEEEEcC-CcceEEEEe-c--c----------ceeeecccCCCeeeeeeee
Q 002405 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFS-F--G----------KCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~-~~~~v~~~~-~--~----------~~~~s~s~d~~~~~w~~~~ 421 (927)
+ |+=... +-+......+.|++++.++...... ..-+.+.+. + . ++-..|.....++++.+..
T Consensus 90 ~---~dwvye-EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~ 165 (353)
T PF00930_consen 90 V---PDWVYE-EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL 165 (353)
T ss_dssp B-----HHHH-HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES
T ss_pred c---cceecc-ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC
Confidence 0 000000 1112223566788877766544321 111111111 1 0 0112334444444443332
Q ss_pred cCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEE--EEeCCce---E-EEEccCCcEEeeCCcccee
Q 002405 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA--VAGLHGL---I-LYDIRQKKWRVFGDITQEQ 495 (927)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la--~ag~dg~---i-~wd~~s~~w~~f~~~~~e~ 495 (927)
...+. .....|.........+..+.|++|++.++ ...++.. + ++|..+++-+..-.+..+.
T Consensus 166 ~~~~~-------------~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~ 232 (353)
T PF00930_consen 166 ASGKT-------------TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDG 232 (353)
T ss_dssp SSTCC-------------CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSS
T ss_pred CCCcE-------------EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCc
Confidence 22110 01112322233345578899999999443 3344432 2 6677776544332211111
Q ss_pred eeEEE-EEEee---CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 496 KIQSK-GLLWL---GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 496 ~~~v~-~~~W~---~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
=+... ...+. ++.++.... .++..+|-+++.+
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~--~~G~~hly~~~~~ 268 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISE--RDGYRHLYLYDLD 268 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEE--TTSSEEEEEEETT
T ss_pred ceeeecccccccCCCCEEEEEEE--cCCCcEEEEEccc
Confidence 11111 23332 444444422 5667788888774
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.67 E-value=2.1 Score=48.19 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=53.4
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEEEEecCcee---ecCC---------CCCCCccceee--------eEEeecccccc
Q 002405 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI---QIGG---------KQPSGLFFIKI--------SLVLNEQLPFA 129 (927)
Q Consensus 70 ~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~---~~~~---------~~~~~~~~~~~--------~~~~~~~~~~~ 129 (927)
++.+.|+++..=||++...|.|.||.....+... .... +......+.++ ...+.-...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5689999999999999999999999876433211 0000 00001111111 11122222334
Q ss_pred cccceEEEeeccC-CeEEEEecCCcEEEEecCCcc
Q 002405 130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEF 163 (927)
Q Consensus 130 ~~~~~v~~i~~~~-~~l~v~~~dg~i~~~~w~~~~ 163 (927)
...++|+++..++ ..+++|..+|.+.+++..+..
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa 118 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA 118 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe
Confidence 5578888887655 789999999999999886543
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.44 E-value=0.024 Score=38.80 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=27.7
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEe
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd 284 (927)
..|...+ ++.|+|+++++++|+.||.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567778 999999999999999999999996
No 340
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.41 E-value=4.1 Score=42.63 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=69.1
Q ss_pred CCcEEEEeeecCccceeeeccccee-cCCCCeEEEEEc-CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~-~~h~~~v~v~~s-p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (927)
+|.++++....+.+..++....+.. .....+..+++. ++++++++ ..++ +.++|..+ ++......... ....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~-g~~~~~~~~~~---~~~~ 84 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDT-GKVTVLADLPD---GGVP 84 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETTC-EEEEETTT-TEEEEEEEEET---TCSC
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcCc-eEEEecCC-CcEEEEeeccC---CCcc
Confidence 6677776666666666665554332 112236678888 67655554 4444 45568776 43332222210 0002
Q ss_pred CCCeeEEEECCCCCEEEEEEcC--------CcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 307 TGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~D--------g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
....+.+++.|||++.++.... |.+..++.. ++......+ ....+.++|+|++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg 145 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG 145 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc
Confidence 3457899999999977776643 345555555 333222222 4456778899887
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.32 E-value=3.6 Score=44.47 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=84.5
Q ss_pred cceEEEEEeCCcEEEEeee-cCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEE
Q 002405 220 MRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTV 295 (927)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~-d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l 295 (927)
...|..+..||+++-..-+ +|... ...+ +.. ....... .-++..++..+..-+-+|.|+--|+.... +....+
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEA--QKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEE--EEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred CCceEEEecCCceEEEEECCCCCEe--Eeec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 3556777888887776665 44433 1111 111 2222233 44555565566666889998888876522 112222
Q ss_pred eeec-CCC-CCCCCCCeeEEEECCCCCEEEEEE--------cCC--cEEEEEccCCeeEEEeccccccceecceecCCCC
Q 002405 296 SLYD-WGY-SMDDTGPVSCIAWTPDNSAFAVGW--------KSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (927)
Q Consensus 296 ~~~~-~~~-~~~h~~~V~~l~~spdg~~Lasg~--------~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~ 363 (927)
+... ... ..-..|.-.-+++++....|.+.- +|+ .|-++|+.+++.+..+.-. ..+.++..+.+.
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~- 300 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDD- 300 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSS-
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCC-
Confidence 2100 000 000124445577877655555421 222 3666688888888887742 357788888876
Q ss_pred CCccccc---cc--ceeEEEcCCCceEEEEEc
Q 002405 364 CKYEPLM---SG--TSMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 364 ~~~~~l~---sg--~~~~~W~~~~~~l~~~~~ 390 (927)
++++ ++ ..+.++|..+++++....
T Consensus 301 ---~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 301 ---KPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ---S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ---CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 3322 22 268889999888877764
No 342
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.19 E-value=0.42 Score=56.48 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=64.7
Q ss_pred cCccceeeeccccee---cCCCCeEEEEEcCC-CcEEEEEecCCeEEEEeccCCCcc-eEEEeeecCCCCCCCCCCeeEE
Q 002405 239 KKGLKLAEFIKIDKE---LGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCI 313 (927)
Q Consensus 239 d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l 313 (927)
|.-+++||+..-+.+ .-+-++.-+.|.|. -..+|+++..|...+-|..+-+.+ ........ ....+.++
T Consensus 245 D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------~~s~i~~f 318 (1118)
T KOG1275|consen 245 DPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP------NGSGISAF 318 (1118)
T ss_pred cchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc------CCCcceeE
Confidence 556889998765433 23444557788886 457899999999999884321222 22333211 23448999
Q ss_pred EECCCCCEEEEEEcCCcEEEEEc
Q 002405 314 AWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 314 ~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.+|++|..+|.|..+|.|-+|.-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999973
No 343
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.047 Score=65.27 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=59.7
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE
Q 002405 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 265 sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
.-.+.++|.|+..|.|...|+.. . +..+...+ .-.++|++++|+.||+.++.|-.+|.|.+||+..+...+.
T Consensus 96 a~~~~~ivi~Ts~ghvl~~d~~~-n--L~~~~~ne-----~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 96 AIVVVPIVIGTSHGHVLLSDMTG-N--LGPLHQNE-----RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeeeEEEEcCchhhhhhhhhc-c--cchhhcCC-----ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 34567899999999999999864 2 11111111 1368999999999999999999999999999999888887
Q ss_pred eccc
Q 002405 345 IRQI 348 (927)
Q Consensus 345 l~~~ 348 (927)
+..+
T Consensus 168 i~e~ 171 (1206)
T KOG2079|consen 168 ITEH 171 (1206)
T ss_pred eeec
Confidence 7765
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.04 E-value=0.66 Score=53.99 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=65.0
Q ss_pred EEEEeCCcEEEEeee-cCccceeeeccccee---------------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 224 FVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE---------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~~~~w~~~~~~~~---------------~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
+.++|||++++++.. +.++.+.|..+.+.+ .--..+...+|.++|....+-.-|.+|-.|+++.
T Consensus 326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 456899997776653 667777776553310 0113455779999999999999999999999975
Q ss_pred C-----Ccc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 288 S-----ASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 288 ~-----~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
. +.. ...+...+..+.++|......=.-.|||++|++...
T Consensus 406 a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 406 AIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred HHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 1 111 122222333445555433333344689999988654
No 345
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.99 E-value=0.2 Score=59.10 Aligned_cols=174 Identities=17% Similarity=0.103 Sum_probs=104.5
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
+..+..|+--..+..+|+.+ ....+.... ..+.|+-|+ .+++.|.+|...|+|.+=|..+.+.++++..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a 215 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA 215 (1118)
T ss_pred Ccceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeec
Confidence 34455555555566778776 444444333 233455554 4678999999999999999999999999988
Q ss_pred ccccceecceecCCCCCCcccccccc------------eeEEEcCCCceEEEEEcCCcc-eEEEEec--cceeeecccCC
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGSSE-RVLIFSF--GKCCLNRGVSG 412 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~------------~~~~W~~~~~~l~~~~~~~~~-~v~~~~~--~~~~~s~s~d~ 412 (927)
| .+.++....+ | ..+++++ -+++||.+..+.+.-..-+.+ .++.|-+ ...++..+..|
T Consensus 216 H-s~siSDfDv~--G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 216 H-SGSISDFDVQ--G----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred c-ccceeeeecc--C----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc
Confidence 8 6666654443 2 3444433 356787776655443322211 2233333 33444455555
Q ss_pred CeeeeeeeecCCeEEEeecCCCCcceEEEeecCc--c-cccCCCc-eEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV--S-YISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~-~~~~~~~-I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
....-+...-.+ |. . +..-+++ +....+|++|+.+|.|..+|.+ +|.
T Consensus 289 q~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSN--------------------PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCC--------------------CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 544433111111 11 1 1111222 8889999999999999999999 997
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.86 E-value=0.11 Score=60.25 Aligned_cols=105 Identities=20% Similarity=0.298 Sum_probs=76.7
Q ss_pred EEEEcCCCcEEEEEe----cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 261 CASIAPEQQILAVGT----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 261 ~v~~sp~~~~la~g~----~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
-.+|+|...++|+++ ..|.|.||-- + |++-+... ..-.+++++|+|.--.||+||+-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-t-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-T-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-C-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEec
Confidence 467899999998886 4678888853 3 44322111 1122577999999999999999999999998
Q ss_pred cCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCC
Q 002405 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (927)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (927)
.+.+ .++....|...+..+.||++| ..++++. .+..|..+
T Consensus 89 ~~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 7654 455555448889999999999 7777765 67778654
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.86 E-value=0.82 Score=51.92 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=53.5
Q ss_pred EEeCCcEEEEeeec-Cccceeee--c--ccceecCCCCeE-EEEEcCCCcEEEEEecC-Ce--EEEEeccCCCcceEEEe
Q 002405 226 LYSNGQLMSCSVSK-KGLKLAEF--I--KIDKELGSGDAV-CASIAPEQQILAVGTRR-GV--VELYDLAESASLIRTVS 296 (927)
Q Consensus 226 ~s~dG~~~~~~~~d-~~~~~w~~--~--~~~~~~~h~~~v-~v~~sp~~~~la~g~~D-g~--V~vwd~~~~~~~~~~l~ 296 (927)
++|||+.++..++. +...+|-. . ...........- +-.+||||+++|..+.+ |. |.+.++.+ +...+.+.
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~-~~~~~~lt 367 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS-GGKIRILT 367 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC-CCcEEEcc
Confidence 47888877776654 33444422 1 112222222222 66899999999987753 44 66666655 33244443
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
. +.....-+|+|||+.+...+..
T Consensus 368 ~---------~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 368 S---------TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred c---------cccCCCCCcCCCCceEEEeccC
Confidence 2 3344556789999887765543
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.56 E-value=0.093 Score=38.93 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=29.8
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
...|.+++|+|....||.|..||.|.++.+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 457999999999999999999999999999554
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.55 E-value=0.33 Score=55.89 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
...+ --+++..++++|.|+.-|.+.+|+-.. +.. +.+..+ ..+.+..+..|++.+++|.|+..|.|.|+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~~--------~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNEG--------ATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCc-hhhhcccccC--------ccceEEEEEecchhHhhhhhcCCceEEee
Confidence 3344 446678899999999999999999764 322 222222 45677788899999999999999999999
Q ss_pred EccCCe---eE--EEeccccccceecceecCCCCCCccccccc
Q 002405 335 SVSGCR---LM--STIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 335 ~~~~~~---~~--~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
-+..+. ++ ......|...|+++.|++++ ..+.+|
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~----~k~ysG 142 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG----MKLYSG 142 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccc----cEEeec
Confidence 875431 11 12222125567777777776 445444
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.47 E-value=0.02 Score=64.47 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=55.2
Q ss_pred CeE-EEEEcCCC--cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEc----CC
Q 002405 258 DAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK----SR 329 (927)
Q Consensus 258 ~~v-~v~~sp~~--~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~----Dg 329 (927)
..+ |++.+.+. .++|+|..+|.|-+-.+.. .... .+.+.++|..+.++++|++ |...||+|-+ |.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~-~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRH-PHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCC-cccc------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 344 77776644 5899999999999988765 2111 1223445888999999998 7888988853 55
Q ss_pred cEEEEEccCC
Q 002405 330 GLTVWSVSGC 339 (927)
Q Consensus 330 ~v~vW~~~~~ 339 (927)
.+.|||+.++
T Consensus 130 ~~~Iwdi~s~ 139 (783)
T KOG1008|consen 130 SLKIWDINSL 139 (783)
T ss_pred Cccceecccc
Confidence 7999999765
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.45 E-value=6.2 Score=41.22 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=67.4
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCC
Q 002405 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
.+..++|+|..+.+.++......++--+.+|.+. .-. .+.+..+.=.+++--++.++++--.++.+.+++++..+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl--r~i---~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL--RRI---PLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EE--EEE---E-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE--EEE---eCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4778888877664444444443333323333321 001 12444555588888888777776568999999995423
Q ss_pred cce--EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 290 SLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 290 ~~~--~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
..+ ........+....+...+-.++|.|.++.|.++-+..-.+++.+.+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 222 2222222233333556789999999988888888877788888765
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=0.51 Score=56.94 Aligned_cols=69 Identities=19% Similarity=0.395 Sum_probs=51.6
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCC---eeEEEECCCCCEEEEEEcCCcEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP---VSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~---V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
..+| +++||.+|++++.|-.+|.|.+||+.. ++..+.+.. |..+ |.-+.|..++..+.++..-|.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e--------~~ap~t~vi~v~~t~~nS~llt~D~~Gs-- 198 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE--------HGAPVTGVIFVGRTSQNSKLLTSDTGGS-- 198 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee--------cCCccceEEEEEEeCCCcEEEEccCCCc--
Confidence 4667 999999999999999999999999987 677776665 4433 344556667776666655343
Q ss_pred EEEc
Q 002405 333 VWSV 336 (927)
Q Consensus 333 vW~~ 336 (927)
+|..
T Consensus 199 f~~l 202 (1206)
T KOG2079|consen 199 FWKL 202 (1206)
T ss_pred eEEE
Confidence 7775
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.17 E-value=0.13 Score=38.09 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.5
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEecc
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~ 286 (927)
..| +++|+|+..+||.|+.||.|.+|.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 446 99999999999999999999999984
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=5.6 Score=41.34 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=44.5
Q ss_pred EEcCCCcEEEEEec-----CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 263 SIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 263 ~~sp~~~~la~g~~-----Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
.|||||.+|-..-. -|.|-|||.+..-..+-.++. |.=.-..+.|.+||+.++.+. |+|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t--------~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST--------HGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc--------CCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 59999999876433 368999998753333444444 554457899999999999874 677666
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=15 Score=41.37 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=68.2
Q ss_pred EEEeCCc-EEEEeeecCccceeeeccccee----cCCCCeEEEEEcCCCcEEEEEec---CCeEEEEeccCCCcceEEEe
Q 002405 225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 225 ~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v~v~~sp~~~~la~g~~---Dg~V~vwd~~~~~~~~~~l~ 296 (927)
+++++|. .+++..++..+.+.|....... .|. .+..++++|+++.+-++.. ++++.+.|-.+ ...+.+..
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEe
Confidence 3456665 6666655666666664333222 232 4448999999976665554 67888887766 55555433
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEccCCee
Q 002405 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRL 341 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~~~~~~ 341 (927)
. -..+ ..++++|+|..+.++. .++.+.+.|..+...
T Consensus 158 v--------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 158 V--------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred c--------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 3 2234 8899999999776665 678999999766543
No 356
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=5.5 Score=43.21 Aligned_cols=233 Identities=14% Similarity=0.099 Sum_probs=111.3
Q ss_pred ccEEEEcCCcc-EEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEE
Q 002405 70 NLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLL 147 (927)
Q Consensus 70 ~~~v~wspDg~-~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v 147 (927)
+.+++|||... .+..++.++.|.|.|+++......+..+ ..+|+. |+..+. ..|+.
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC------------------~wDlde~h~IYa 253 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSC------------------CWDLDERHVIYA 253 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceee------------------eeccCCcceeEE
Confidence 46899999988 6888999999999999854322111111 112322 222222 46889
Q ss_pred EecCCcEEEEecCCccccceeec----ccC-CCCcccccccccCCCCCcccc-----------CCCceecccccCCCccE
Q 002405 148 GLSDGSLYSISWKGEFYGAFELV----HSS-NDSSVAALSHHFPSNGLASVD-----------TSGAFVSDHKFPISSAI 211 (927)
Q Consensus 148 ~~~dg~i~~~~w~~~~~~~~~~~----~~~-~~~~~i~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~i 211 (927)
|..+|.|.+++.....+--..+. ..| ++...+..-+...-..+..+. +.+....+.-.+..+.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~c 333 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGIC 333 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcce
Confidence 99999999987653332111000 001 000000000111111111110 00111111112345667
Q ss_pred EEEEEccCcceE-EEEEeCC-----cEEEEeeecCc--cceeeeccc---cee-cCCCCeEEEEEcCCCcE-EEEEecCC
Q 002405 212 IWLELCLPMRLL-FVLYSNG-----QLMSCSVSKKG--LKLAEFIKI---DKE-LGSGDAVCASIAPEQQI-LAVGTRRG 278 (927)
Q Consensus 212 ~~i~~~~~~~~~-~~~s~dG-----~~~~~~~~d~~--~~~w~~~~~---~~~-~~h~~~v~v~~sp~~~~-la~g~~Dg 278 (927)
.++.|++..+.+ +.+-||- +.+.. ..|+. .-+|..... ... +-++.. .+.-.++..+ +.+|.+..
T Consensus 334 ismqy~~~snh~l~tyRs~pn~p~~r~il~-~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~-ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 334 ISMQYHGVSNHLLLTYRSNPNFPQSRFILG-RIDFRDGFPVCGKRRTYFGSKQTKLSTTQ-AIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred eeeeecCccceEEEEecCCCCCccceeeee-eeccccCceeeeecccccCCccccccccc-ceeccccccEEEEecCCcc
Confidence 777877765433 3333321 11111 11110 112211110 000 011111 2222345454 44566778
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-C-CCEEEEEEcCCcEEEEEcc
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-D-NSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-d-g~~Lasg~~Dg~v~vW~~~ 337 (927)
++.+||... .+.+.++.. +.+|.+++... + +.+||+-.+ ..+.|+..+
T Consensus 412 ~lil~D~~s-~evvQ~l~~---------~epv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e 461 (463)
T KOG1645|consen 412 ELILQDPHS-FEVVQTLAL---------SEPVLDICPNDTNGSSYLALLTD-DRVHIYKNE 461 (463)
T ss_pred eeEEeccch-hheeeeccc---------CcceeecceeecCCcchhhheec-ceEEEEecC
Confidence 999999987 777777765 46788776543 3 446666655 467777543
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.64 E-value=4.9 Score=47.82 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=57.8
Q ss_pred EEEEEeCCcEEEEee------ecCccceeeeccc---cee-cCCCCeEEEEEcCCCcEEEEEecC-CeEEEEeccCCCcc
Q 002405 223 LFVLYSNGQLMSCSV------SKKGLKLAEFIKI---DKE-LGSGDAVCASIAPEQQILAVGTRR-GVVELYDLAESASL 291 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~------~d~~~~~w~~~~~---~~~-~~h~~~v~v~~sp~~~~la~g~~D-g~V~vwd~~~~~~~ 291 (927)
..++++||+.++... .|..-.+|-...+ ..+ .+. .-..-+|+|+|+.|++.+.. ..+++.+-.. ...
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCC-Cce
Confidence 466789998777665 2433445543211 111 221 22277999999988887643 2233333221 111
Q ss_pred eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
+..+....-.......+.|.+++|||||..+|.-.. +.|.|
T Consensus 432 l~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 432 LARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred EEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 211111000000013678999999999999988663 55554
No 358
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.42 E-value=3.7 Score=48.75 Aligned_cols=66 Identities=20% Similarity=0.372 Sum_probs=44.7
Q ss_pred cCCCEEEEEeCCce-----E-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 462 KDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 462 pdG~~la~ag~dg~-----i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
=+|+..|+||.||. + .||..+.+|.....-.... ..+....+.+...+++++.....-..+..|+.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeEEcCC
Confidence 38899999998873 5 7999999999875443333 12333455566667776655555567777765
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.38 E-value=4.9 Score=47.82 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=52.4
Q ss_pred CeE-EEEEcCCCcEEEEEe------cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C
Q 002405 258 DAV-CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R 329 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~------~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g 329 (927)
..+ ..++||+|+.+|... .|..-.||-....+.......+ ...+.-+|+|||..|++..+. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g----------~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG----------HSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC----------CCCCCceECCCCCceEEEecCcc
Confidence 345 889999999988765 3544455544432333222222 136778999999988887643 1
Q ss_pred cEEEE-----------EccCCeeEEEeccccccceecceecCCC
Q 002405 330 GLTVW-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 330 ~v~vW-----------~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+++. ++.++.... .. ...|+++.+|||+
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG 459 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDG 459 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCC
Confidence 22222 333332211 11 2458888888887
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.15 E-value=1.5 Score=39.03 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=46.2
Q ss_pred EEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 263 SIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 263 ~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.|.-+| .-|.+||.|..||+|+-+ ..+..+.. ++.|++++-... ..++-|-.+|+|.+++-
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 344444 469999999999999854 35555554 677888887766 56888999999999875
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.70 E-value=1.3 Score=53.60 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=60.4
Q ss_pred EEEeeecCccceeeeccc-cee---cCC----CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 233 MSCSVSKKGLKLAEFIKI-DKE---LGS----GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 233 ~~~~~~d~~~~~w~~~~~-~~~---~~h----~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
-++|.++..+..||.+-. .+. ..| ..-. |++-+.+| .||+|+.+|.||+||-.. ......+.+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~------ 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPG------ 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCC------
Confidence 455666666767776532 111 111 1223 77766666 689999999999999431 222222223
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
-..||..|..+.||+++++.+. ..+-+.++
T Consensus 617 --lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 617 --LGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred --CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 5689999999999998877765 56777765
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.55 E-value=3.2 Score=46.71 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=50.0
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-----CC---CEEEEEEc
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DN---SAFAVGWK 327 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-----dg---~~Lasg~~ 327 (927)
.+.| +++.| |=.++|+|.++|.+.|.|++. ...+..-...+..........|+++.|+. |+ -+|.+|..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RG-PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRG-PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTT-TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCC-CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 5667 77775 666999999999999999975 44444433222111222456789999983 44 37788888
Q ss_pred CCcEEEEEc
Q 002405 328 SRGLTVWSV 336 (927)
Q Consensus 328 Dg~v~vW~~ 336 (927)
.|.+.+|.+
T Consensus 164 ~G~v~~fkI 172 (395)
T PF08596_consen 164 SGNVLTFKI 172 (395)
T ss_dssp TSEEEEEEE
T ss_pred CCCEEEEEE
Confidence 888888876
No 363
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=91.22 E-value=0.19 Score=60.23 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=86.2
Q ss_pred CcceecHHHHHHHHHHccCHHHHHHHHHHcCCCCCchHHHHHH-HHHhhhcccccccccccccCCcccccchhhHHHHHH
Q 002405 755 PQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWL-LFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCN 833 (927)
Q Consensus 755 ~~~~~~L~~~l~~ll~~~~~~~a~~~~~~~~~l~~f~~~LE~l-L~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~ 833 (927)
.++.++|.++ -|...+.+-|.|+.+-++.+.-....++.. +..=.-.+ +-+....+
T Consensus 794 ~~~a~~L~q~---aL~~~kwdl~~Elirfl~~i~p~~~~~~~~~~~~~~~~~--------------------~s~d~~~~ 850 (1023)
T KOG2006|consen 794 VQHALRLLQL---ALEEKKWDLAKELIRFLRSIGPEKIDLPTKLIATPTLRS--------------------PSLDKSLE 850 (1023)
T ss_pred HHHHHHHHHH---HHHhhcchhHHHHHHHHHhcCcchhhccchhccCccccC--------------------ccchhhhH
Confidence 3455555443 445567788888888888888888777772 21110000 12344444
Q ss_pred HHHhcc--------------hhHHHHhhhcccccccchHHhHhccC-ChHHHHHHHHhcCcHHHHhhHHhhhhhccC
Q 002405 834 FIRNFP--------------EYLNVVVSVARKTDGRHWADLFSAAG-RSTELFEECFQRRWYRTAACYILVIAKLEG 895 (927)
Q Consensus 834 ~l~~~~--------------~~l~ivv~c~RK~e~~~W~~lF~~~g-~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~ 895 (927)
|++.|+ ..+++.-+|.||.+++.|+..|.... +|++..+.|++...-+.|...|..+.+|+.
T Consensus 851 f~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~i~~~l~~ha~~lL~~~~l~dl 927 (1023)
T KOG2006|consen 851 FIDQRNNVLSEHAILESVHSSMLSIQKNCKRKSGTKGWNHDKTNLKQTPRDRLALCIDEILARHARVLLLNFLLLDL 927 (1023)
T ss_pred HHHhhccccccccccCCccchhhccccccccccCCCCcccchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 543332 35888999999999999999999988 999999999999999999999999998874
No 364
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.89 E-value=21 Score=41.08 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=40.4
Q ss_pred EEEEcCCCcEEEEEecCC-eEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 261 CASIAPEQQILAVGTRRG-VVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg-~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
-+||+|+.+.+|+||... .|.||.+... ...++.+... ....-..++|-.|.-.|+.-+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe-------~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLE-------SNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcc-------cCCCCceeeEccCCeEEEEecc
Confidence 579999999999999875 6889998641 1234444431 2334466888888776665543
No 365
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.77 E-value=16 Score=38.55 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=54.6
Q ss_pred CeEEEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE-
Q 002405 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS- 335 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~- 335 (927)
.....++|++++.+|.-. .++.-.||-....+.....+.+ ..+..-+|+++|...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 344899999999887655 2333344444332222222222 3577789999999888888777777774
Q ss_pred ccCCe-eEEEecccccc-ceecceecCCC
Q 002405 336 VSGCR-LMSTIRQISLS-SISSPIVKPNQ 362 (927)
Q Consensus 336 ~~~~~-~~~~l~~~~~~-~v~s~~~sp~~ 362 (927)
...+. ....+...... .|+++++|||+
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC
Confidence 22221 11222221112 56677777766
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.36 E-value=42 Score=39.22 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEE---------cCCcEEEEEcc
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS 337 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~---------~Dg~v~vW~~~ 337 (927)
..+.+++.||.|.-+|.++ ++.+-+..... +...-..+.-+| .+..+++++ .++.+...|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 5777888999999999988 66554443311 100001122222 223444443 35778888888
Q ss_pred CCeeEEEec
Q 002405 338 GCRLMSTIR 346 (927)
Q Consensus 338 ~~~~~~~l~ 346 (927)
+++......
T Consensus 184 TG~~~W~~~ 192 (488)
T cd00216 184 TGKLLWRFY 192 (488)
T ss_pred CCceeeEee
Confidence 887766554
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.23 E-value=0.79 Score=45.94 Aligned_cols=99 Identities=9% Similarity=0.153 Sum_probs=58.0
Q ss_pred CcEEEEeeecCccceeeeccc-c---eecCCCCeE--EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 230 GQLMSCSVSKKGLKLAEFIKI-D---KELGSGDAV--CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 230 G~~~~~~~~d~~~~~w~~~~~-~---~~~~h~~~v--~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
++-++++..++.+.+|+.... . ....-...+ .+..-.++.+..+|+.||.||.|++.. .+.+-....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~------ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ------ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc------
Confidence 445666677777666654311 0 011112233 233334566889999999999999876 444333333
Q ss_pred CCCC-CCeeEEEECCCCCEEEEE--EcCCcEEEEEcc
Q 002405 304 MDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVS 337 (927)
Q Consensus 304 ~~h~-~~V~~l~~spdg~~Lasg--~~Dg~v~vW~~~ 337 (927)
|+ .++.....+..++.++.+ |.|..++.|++.
T Consensus 143 --h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 143 --HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred --ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 65 455555555566666666 666667777664
No 368
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.73 E-value=7.9 Score=45.43 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCCCCEEEEEEcCCcEEEEEccC-----CeeEEEeccccccceecceecCCCCCCcccccccc----eeEEEcCCC
Q 002405 316 TPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYG 382 (927)
Q Consensus 316 spdg~~Lasg~~Dg~v~vW~~~~-----~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~ 382 (927)
.+||++...+ +++|.|.|..+ ......+.- ..+...+.++||+ +.+..+. ++-+.+...
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDG----kylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCC----CEEEEeCCCCCcEEEEEChh
Confidence 4578876663 57899999987 345555543 2456678899998 5443322 555556554
No 369
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.60 E-value=1.5 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=19.3
Q ss_pred CcccccccCCceEEEEeeCCEEEEEe
Q 002405 623 TSSDMLAREPARCLILRANGELSLLD 648 (927)
Q Consensus 623 ~~~~~~~~~~~~~lil~~~g~l~~l~ 648 (927)
+.+++-+.....|+|+| +|+|.++.
T Consensus 207 g~ekfffd~~n~cli~n-ageltlve 231 (1636)
T KOG3616|consen 207 GHEKFFFDFENCCLIFN-AGELTLVE 231 (1636)
T ss_pred CcceeeeecCcEEEEEe-cCeeEEEE
Confidence 44666666777899988 99998874
No 370
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=87.52 E-value=40 Score=35.28 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=95.9
Q ss_pred CceEEEEEec-CeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 21 SQQIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 21 ~~~iv~fs~d-g~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
..+-++++|| ++++|+.. ...|...+.+ +..+.... +...|..-.|++.-++.++++.-.++.+.++++..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4677999998 45666654 4456555553 33333332 34467778999998887766665688898888853
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
....... .....+.+.+... ......-.|..+.++.++++....-..++.+++.... ..+ ..
T Consensus 96 ~~~~~~~-------~~~~~~~l~~~~~---~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~-------~~ 157 (248)
T PF06977_consen 96 DTTSLDR-------ADVQKISLGFPNK---GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDL-------FV 157 (248)
T ss_dssp --TT--E-------EEEEEEE---S------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S---------EE
T ss_pred cccccch-------hhceEEecccccC---CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cce-------ee
Confidence 3211000 0001111111100 0000111244555677777766555555555541100 000 00
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc-eeeeccccee--cC
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKE--LG 255 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~w~~~~~~~~--~~ 255 (927)
....++.. .......+..+.|+|..+.+..+|..++.++--..+|.+. .+.+..+..- ..
T Consensus 158 ~~~~~~~~-----------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~ 220 (248)
T PF06977_consen 158 SDDQDLDD-----------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKD 220 (248)
T ss_dssp EE-HHHH------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS-
T ss_pred cccccccc-----------------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccc
Confidence 00000000 0011223567788898888888888888777666666543 3333332100 11
Q ss_pred CCCeEEEEEcCCCcEEEEE
Q 002405 256 SGDAVCASIAPEQQILAVG 274 (927)
Q Consensus 256 h~~~v~v~~sp~~~~la~g 274 (927)
...+-.++|.++|++.++.
T Consensus 221 ~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 221 IPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp --SEEEEEE-TT--EEEEE
T ss_pred cCCccEEEECCCCCEEEEc
Confidence 2334489999999877764
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.36 E-value=43 Score=35.50 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=45.3
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 266 p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
..++.|++|+++| +.+|++.......+.. +..+|..+...|+-+.|++-++ +.+.++++..-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----------~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL----------KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe----------ecceEEEEEEecccCEEEEEcC-CccEEEEchhh
Confidence 4678899999999 8999984423333333 2344999999998777776654 99999998653
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.90 E-value=52 Score=35.96 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=37.6
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCC------Cc-ceEEEeeecCCCCCCC-CCCeeEE---EECCC--CC------E
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAES------AS-LIRTVSLYDWGYSMDD-TGPVSCI---AWTPD--NS------A 321 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~------~~-~~~~l~~~~~~~~~~h-~~~V~~l---~~spd--g~------~ 321 (927)
++.+-++++.++++..+|.+.++..... +. .+...... | ...|+++ +..|. +. .
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-------~lg~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-------HLGDIVNSFRRGSLIPRSGSSESPNRPQ 249 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-------E-SS-EEEEEE--SS--SSSS-TTEEEE
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-------ECCCccceEEEEEeeecCCCCcccccce
Confidence 7777766679999999999999988631 11 12211111 3 3567777 55562 22 3
Q ss_pred EEEEEcCCcEEEE
Q 002405 322 FAVGWKSRGLTVW 334 (927)
Q Consensus 322 Lasg~~Dg~v~vW 334 (927)
+.-+..+|+|-+-
T Consensus 250 i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 250 ILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEETTS-EEEE
T ss_pred EEEEecCCEEEEE
Confidence 6667778888633
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=86.72 E-value=1 Score=45.24 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCe-eEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV-SCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V-~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
-+.-+++|+.||.|.+|+....+........ -..+| .-+.-..++.+..++..||.++.|++.-++.+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc--------ccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 3567999999999999998754433222211 11222 22333346778889999999999999777666555
Q ss_pred ccc
Q 002405 346 RQI 348 (927)
Q Consensus 346 ~~~ 348 (927)
.+|
T Consensus 141 g~h 143 (238)
T KOG2444|consen 141 GQH 143 (238)
T ss_pred ccc
Confidence 444
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.60 E-value=0.36 Score=54.85 Aligned_cols=141 Identities=16% Similarity=0.255 Sum_probs=82.3
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcC-CCcEEEEEe----cCCeEEEEeccCCC--cceE
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGT----RRGVVELYDLAESA--SLIR 293 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp-~~~~la~g~----~Dg~V~vwd~~~~~--~~~~ 293 (927)
..++...+|++.++...+..-.-| +...+|.... ++||++ |...||.|- .|..+.|||+.. . .+..
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~-----E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s-~ltvPke 145 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSA-----EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS-LLTVPKE 145 (783)
T ss_pred hhhhccccCceEEeecCCcccccc-----eecccccccccccccccccHHHHHhhhhhhcccCCccceeccc-ccCCCcc
Confidence 344556677766654433221112 2225666666 999999 677888874 467899999976 3 1111
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe-eEEEeccccccceecceecCCCCCCccccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
... +..+.-..+.+++|-.|-+.+.+|...+.+.++|+.-.. ....+. +..+..+..+|-.. .++++.
T Consensus 146 ~~~-----fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~---nY~cs~ 214 (783)
T KOG1008|consen 146 SPL-----FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSP---NYFCSN 214 (783)
T ss_pred ccc-----cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCC---Cceecc
Confidence 111 111123456789999999999999998999999986321 111111 22344455555221 344443
Q ss_pred c--eeEEEc
Q 002405 373 T--SMMQWD 379 (927)
Q Consensus 373 ~--~~~~W~ 379 (927)
+ .+-+||
T Consensus 215 ~dg~iAiwD 223 (783)
T KOG1008|consen 215 SDGDIAIWD 223 (783)
T ss_pred ccCceeecc
Confidence 3 677898
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.09 E-value=50 Score=34.94 Aligned_cols=127 Identities=14% Similarity=0.184 Sum_probs=79.8
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
...+.+++|+|..+...++...+..++--..+|.+- .--.+.+-.++-.+++--++++.++--.++++.++.++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-----rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-----RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceE-----EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344778888777766555555555554333333221 000124555666788889999999988999999999886
Q ss_pred CCcceEEEe-eecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 288 SASLIRTVS-LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 288 ~~~~~~~l~-~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
.+..+..-. ....+........--.++|.|..+.|..+-+.+-+.|+.+.+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 333222111 1111222222445678999999999999998888888888643
No 376
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.06 E-value=2.6 Score=51.04 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=51.2
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCcee-----------EEEEEeeChHhh---hhcccccEEEEcCCc---cEEEE
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKV-----------RLGKYKRDSESV---QREGENLQAVWSPDT---KLIAV 84 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~-----------~l~~~~r~~~sl---~~~G~~~~v~wspDg---~~Lav 84 (927)
..-|.+||+|+++|.+|...|.|-...+.-. ..+....-...+ .....+..+.|.|.| ..|++
T Consensus 87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v 166 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV 166 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence 3447799999999999998888877632100 011111111111 112356789999985 79999
Q ss_pred EecCcEEEEEEEE
Q 002405 85 VTSSLYLHIFKVQ 97 (927)
Q Consensus 85 ~t~dg~l~i~~l~ 97 (927)
-|+|+++|+||+.
T Consensus 167 Ltsdn~lR~y~~~ 179 (717)
T PF10168_consen 167 LTSDNTLRLYDIS 179 (717)
T ss_pred EecCCEEEEEecC
Confidence 9999999999996
No 377
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.61 E-value=1e+02 Score=38.21 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=49.5
Q ss_pred CCCceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEe-eChHhhhhcccccEEEEcCCc------cEEEEEecCcE
Q 002405 19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYK-RDSESVQREGENLQAVWSPDT------KLIAVVTSSLY 90 (927)
Q Consensus 19 ~~~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~-r~~~sl~~~G~~~~v~wspDg------~~Lav~t~dg~ 90 (927)
|+...|+..-.+.+.++++ +.+.+.-.-.+ ...++..+. |.. -...+.|+++.||. +++++++.|+.
T Consensus 537 P~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~t----l~~~vac~ai~~~~~g~krsrfla~a~~d~~ 611 (1205)
T KOG1898|consen 537 PERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERVT----LSTDVACLAIGQDPEGEKRSRFLALASVDNM 611 (1205)
T ss_pred CCceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeeee----eceeehhhccCCCCcchhhcceeeeeccccc
Confidence 4567777666666666655 44454444443 444555553 211 13556788998887 57999999999
Q ss_pred EEEEEEEec
Q 002405 91 LHIFKVQIT 99 (927)
Q Consensus 91 l~i~~l~~~ 99 (927)
++++.+...
T Consensus 612 vriisL~p~ 620 (1205)
T KOG1898|consen 612 VRIISLDPS 620 (1205)
T ss_pred eeEEEecCc
Confidence 999999733
No 378
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.57 E-value=44 Score=41.35 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=49.2
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEE-----------eeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------SLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l-----------~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (927)
+.| ++....-+..++....||+|.++|-.+ .+.+... +..+.++...+-.++..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 344 777777778999999999999999765 3222111 111112222233356679999999999999
Q ss_pred EcCCcEE
Q 002405 326 WKSRGLT 332 (927)
Q Consensus 326 ~~Dg~v~ 332 (927)
..||.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9888866
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.04 E-value=1.1e+02 Score=37.84 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
-..|--|..+|.++..||.+..|.++.........+.... -+.|+.==.|+..++.-+-+..|+-.-+|.-.+..
T Consensus 588 ~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL 662 (1096)
T KOG1897|consen 588 LTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL 662 (1096)
T ss_pred eEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE
Confidence 4456566889999999999998887752222221111111 25566666787765543334446788888877665
Q ss_pred eEEEe
Q 002405 341 LMSTI 345 (927)
Q Consensus 341 ~~~~l 345 (927)
+...+
T Consensus 663 v~spl 667 (1096)
T KOG1897|consen 663 VYSPL 667 (1096)
T ss_pred EEecc
Confidence 54433
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.77 E-value=77 Score=36.00 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=38.7
Q ss_pred EEEEcCCCcEEEEE-ecCC----eEEEEeccCCCcceE-EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 261 CASIAPEQQILAVG-TRRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 261 ~v~~sp~~~~la~g-~~Dg----~V~vwd~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
..++||+|+++|.+ +..| +++++|+.+ ++.+. .+.. .. -..++|++||+.|.-...|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECS
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeC
Confidence 67899999999976 3334 599999988 54433 2222 11 1239999999977666544
No 381
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.95 E-value=56 Score=33.76 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=30.2
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE--EEEEcC-CCcEEEEEecCCeE
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV--CASIAP-EQQILAVGTRRGVV 280 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v--~v~~sp-~~~~la~g~~Dg~V 280 (927)
...+||..+.+++.|++....|..+..+. ....+.+ +=+++| ++.+.|+ ...|.|
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~v 159 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAV 159 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceE
Confidence 34577888888888877766665543332 1222333 445666 5555554 333443
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.92 E-value=31 Score=39.78 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=24.9
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCceE--EEEccC
Q 002405 450 SQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQ 482 (927)
Q Consensus 450 ~~~~~I~~va~spdG~~la~ag~dg~i--~wd~~s 482 (927)
...+.|-|.+|.+||+.|++|=....- +||-..
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 345679999999999999887655443 888543
No 383
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.76 E-value=3.9 Score=40.25 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=25.0
Q ss_pred cccEEEEcCCc------cEEEEEecCcEEEEEEEE
Q 002405 69 ENLQAVWSPDT------KLIAVVTSSLYLHIFKVQ 97 (927)
Q Consensus 69 ~~~~v~wspDg------~~Lav~t~dg~l~i~~l~ 97 (927)
.+.+++|||-| -.||+.|++|.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67899999965 479999999999999864
No 384
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.57 E-value=58 Score=33.65 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=59.2
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCee-EEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
-|.+++.|+..|.+.+-++.+ ++....+.. -+.|. .-...+||..+-.|+.|++...-|..+..++...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 466799999999999999988 655555443 22232 2235679999999999999999999988888776
Q ss_pred ccccccceecceecC
Q 002405 346 RQISLSSISSPIVKP 360 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp 360 (927)
+-. .+...+++..|
T Consensus 132 kcg-G~~f~sP~i~~ 145 (354)
T KOG4649|consen 132 KCG-GGTFVSPVIAP 145 (354)
T ss_pred ccC-CceeccceecC
Confidence 644 22334444444
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=69 Score=38.20 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=30.5
Q ss_pred ccccchHHhHhccC---Ch---HHHHHHHHhcCcHHHHhhHHh
Q 002405 852 TDGRHWADLFSAAG---RS---TELFEECFQRRWYRTAACYIL 888 (927)
Q Consensus 852 ~e~~~W~~lF~~~g---~P---~~lf~~cl~~~~l~~a~~yL~ 888 (927)
-+.+-|..||+-++ +| .=+.+.|++.|+...|.-|.-
T Consensus 726 a~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred HhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhh
Confidence 35678999999888 34 368899999999999999984
No 386
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.98 E-value=3.5 Score=29.80 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=25.8
Q ss_pred CCeeEEEECCCCC---EEEEEEcCCcEEEEEccC
Q 002405 308 GPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 308 ~~V~~l~~spdg~---~Lasg~~Dg~v~vW~~~~ 338 (927)
|.|.+++|||++. +||-+-.-|.+-|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998544 888887779999999974
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=82.67 E-value=70 Score=33.88 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=38.6
Q ss_pred cCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 30 dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
.++.|++++++.+.+++...+..+..... ...+..+..-|+-+.+++-+ |+++.+|++..
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRILK--------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEee--------cceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 45566777777799988832322222111 12367888888877777665 59999999864
No 388
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.55 E-value=69 Score=34.95 Aligned_cols=177 Identities=13% Similarity=0.065 Sum_probs=92.6
Q ss_pred CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC----CCEEEEEEc----------CCcEEEEEccCC----
Q 002405 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD----NSAFAVGWK----------SRGLTVWSVSGC---- 339 (927)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd----g~~Lasg~~----------Dg~v~vW~~~~~---- 339 (927)
+.|++.|-.+ ...+.++...+. ++--.+..+.+..+ -.++++|.. .|.+.++++...
T Consensus 2 s~i~l~d~~~-~~~~~~~~l~~~----E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 2 SSIRLVDPTT-FEVLDSFELEPN----EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp -EEEEEETTT-SSEEEEEEEETT----EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred cEEEEEeCCC-CeEEEEEECCCC----ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 3578888765 445555444210 01122334445443 457777754 278999999773
Q ss_pred -eeEEEeccccccceecceecCCCCCCccccc-ccceeEEEcCCCce-EEEEEcC-CcceEEEEec-cceeeecccCCCe
Q 002405 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGTSMMQWDEYGYR-LYAIEEG-SSERVLIFSF-GKCCLNRGVSGMT 414 (927)
Q Consensus 340 -~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~-sg~~~~~W~~~~~~-l~~~~~~-~~~~v~~~~~-~~~~~s~s~d~~~ 414 (927)
++.........+.|.++..-. + ..++ .|.++.+|+.+..+ +.....- ....+..+.. +..++.|..-.++
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~~-~----~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSFN-G----RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEET-T----EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEEEEeecCcceEhhhhC-C----EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCE
Confidence 222111111145577665442 2 3333 33378888877666 5444322 1224455555 6667766666666
Q ss_pred eeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
.+..+.....++.... .....-.+.++.|-+|++.++++..+|.+ ++...
T Consensus 152 ~~~~~~~~~~~l~~va-----------------~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVA-----------------RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEE-----------------EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEE-----------------ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6554433222221111 01112347788887777899999999999 77654
No 389
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.01 E-value=93 Score=34.86 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=48.0
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc---ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~---~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.+++ ++.||+|.+.||+--.|.+|.+++...... ...+.+. .+..|....|+.. +-+|--.. .++-
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~--------k~~~IlGF~W~~s-~e~A~i~~-~G~e 135 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT--------KNANILGFCWTSS-TEIAFITD-QGIE 135 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc--------CcceeEEEEEecC-eeEEEEec-CCeE
Confidence 4578 999999999999999999999999843121 1122222 3455788889865 54554443 4566
Q ss_pred EEEcc
Q 002405 333 VWSVS 337 (927)
Q Consensus 333 vW~~~ 337 (927)
+|.+.
T Consensus 136 ~y~v~ 140 (657)
T KOG2377|consen 136 FYQVL 140 (657)
T ss_pred EEEEc
Confidence 66553
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.92 E-value=40 Score=38.33 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=87.0
Q ss_pred EEECCCCCEE-EEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC----cccccccc--eeEEEcCCC--c
Q 002405 313 IAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK----YEPLMSGT--SMMQWDEYG--Y 383 (927)
Q Consensus 313 l~~spdg~~L-asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~----~~~l~sg~--~~~~W~~~~--~ 383 (927)
|-...|.++| .++..-.++.=-|++.|+.+....-+ . .|+-+.+.|+.... .+.++.-+ .+.-||++- .
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~-~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE-D-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccceeeeEeecc-C-CcceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 4444455544 45555577888889999988877765 2 36667777775311 01222111 566788752 2
Q ss_pred eEEEEEcCCc----ceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE
Q 002405 384 RLYAIEEGSS----ERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (927)
Q Consensus 384 ~l~~~~~~~~----~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (927)
..+...++|+ ...-++.. ..+++.||.+|.+++++-. +.. .-..+-+-..+|..
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~~-------------------AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GRR-------------------AKTALPGLGDAIKH 476 (644)
T ss_pred ceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh-hhh-------------------hhhcccccCCceee
Confidence 2333333432 11223332 4578889999999988852 211 02233355679999
Q ss_pred EEEccCCCEEEEEeCCceEEEEc
Q 002405 458 VAASKDGMFLAVAGLHGLILYDI 480 (927)
Q Consensus 458 va~spdG~~la~ag~dg~i~wd~ 480 (927)
|..+.||++|...+..-.++-++
T Consensus 477 VdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 477 VDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred EEeeccCcEEEEecccEEEEEEE
Confidence 99999999998766555555554
No 391
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.17 E-value=1e+02 Score=34.91 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=62.6
Q ss_pred EEEEeCCcEEEEeeec-C----ccceeeecccceecCC-CCeE--EEEEcCCCcEEEEEecCC-----------eEEEEe
Q 002405 224 FVLYSNGQLMSCSVSK-K----GLKLAEFIKIDKELGS-GDAV--CASIAPEQQILAVGTRRG-----------VVELYD 284 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d-~----~~~~w~~~~~~~~~~h-~~~v--~v~~sp~~~~la~g~~Dg-----------~V~vwd 284 (927)
..++|||++++.+.+. | ++++.|..+++..... ...- .++|.++++.+.-...|. .|..|.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 4568899988876543 2 3667777776554221 2222 399999988766554332 478888
Q ss_pred ccCCCcc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-c---EEEEEccC
Q 002405 285 LAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-G---LTVWSVSG 338 (927)
Q Consensus 285 ~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg-~---v~vW~~~~ 338 (927)
+.+.... ...+...+ +......+..|+||++|+.....+ + +.+-+...
T Consensus 209 ~gt~~~~d~lvfe~~~------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 209 LGTPQSEDELVFEEPD------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp TTS-GGG-EEEEC-TT------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CCCChHhCeeEEeecC------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 8763222 23444411 111256889999999887654433 2 45555554
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=80.69 E-value=14 Score=38.87 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=43.6
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEec-cCCCcc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc---CCcEEEEE
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDL-AESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWS 335 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~-~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~---Dg~v~vW~ 335 (927)
.-+|++++.+.++...+...+++.. .. +.. ....... .-.+.|+++++||||..+|.-.. ++.+.|=-
T Consensus 70 ~PS~d~~g~~W~v~~~~~~~~~~~~~~~-g~~~~~~v~~~------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 70 RPSWDPDGWVWTVDDGSGGVRVVRDSAS-GTGEPVEVDWP------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred cccccCCCCEEEEEcCCCceEEEEecCC-CcceeEEeccc------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 6689999888888777777777742 22 221 1112210 01228999999999999988763 24444444
Q ss_pred c
Q 002405 336 V 336 (927)
Q Consensus 336 ~ 336 (927)
+
T Consensus 143 V 143 (253)
T PF10647_consen 143 V 143 (253)
T ss_pred E
Confidence 3
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.45 E-value=19 Score=44.47 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCCccEEEEEEccCc-ceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEE
Q 002405 206 PISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vw 283 (927)
.+.....++.|+|.. ...++...|+.+.+....-.. ....+ ..-...+ |++|+|+|+.+++|-.+|++.-|
T Consensus 153 ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~---~~v~s----~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 153 EKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA---QNVTS----FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred ccccccccccccCCccchhhhhccccchhhhhhhhhh---hhhcc----cCcccceeeEEeccccceeeEecCCCeEEEe
Confidence 344455677787765 355566677776553221100 00001 1123344 99999999999999999999988
Q ss_pred eccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEE
Q 002405 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (927)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (927)
.-. .+....+.... .. ..+.|.+|+|-..-.+|++
T Consensus 226 ~P~--leik~~ip~Pp---~~-e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 226 EPS--LEIKSEIPEPP---VE-ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecc--cceeecccCCC---cC-CCcceeEEEEecceeEEEE
Confidence 754 23233333211 11 2578999999866555554
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.00 E-value=16 Score=43.24 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=66.8
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEc--CCCcEEEEEecCCeEEEEeccC-----CC---
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIA--PEQQILAVGTRRGVVELYDLAE-----SA--- 289 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~s--p~~~~la~g~~Dg~V~vwd~~~-----~~--- 289 (927)
..++-+++.++.++..++.+||...+... ....+.| .+.|. |+++.+.+-+-.+.|.+|.-.. .+
T Consensus 36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 34566777777666777889998765422 1235556 77774 6788766667778888886421 01
Q ss_pred cceEEEeeecCCCCCCCC-CCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 290 SLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~-~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
..++.+...+ |+ .+|.+..|.+||..+++++ +.+.|+|-
T Consensus 116 ~~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ceeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1233333321 44 6899999999998776554 47777764
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.50 E-value=5.3 Score=28.87 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=25.8
Q ss_pred CceEEEEEccC-C--CEEEEEeCCceE-EEEccC
Q 002405 453 WPVQHVAASKD-G--MFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 453 ~~I~~va~spd-G--~~la~ag~dg~i-~wd~~s 482 (927)
+.|+++.|||+ + ..||.+-..|.+ ++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36899999985 4 699999999999 999975
No 396
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.28 E-value=21 Score=43.60 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=84.0
Q ss_pred CCCEEEEE-EcCCcEEEEEccCCeeEEEeccccccceecceecCCCC--CCcccccccc--eeEEEcCCC--ceEEEEEc
Q 002405 318 DNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD--CKYEPLMSGT--SMMQWDEYG--YRLYAIEE 390 (927)
Q Consensus 318 dg~~Lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~--~~~~~l~sg~--~~~~W~~~~--~~l~~~~~ 390 (927)
|-++|..- .....+.-.|+..|+.+.....+....|..++-..... ...+.++.-+ .+..||++- .+++. ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-cc
Confidence 33444333 34578888899999998888776333344433221111 1112222112 677798864 23332 12
Q ss_pred CC----cceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC
Q 002405 391 GS----SERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (927)
Q Consensus 391 ~~----~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG 464 (927)
.| .....++.. ..+++.|+.+|.||+++-. +.. .-..+-+-..||..+.++.||
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~-------------------AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR-------------------AKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh-------------------hhhcCCCCCCCeeEEEecCCC
Confidence 21 122334443 5578899999999998832 211 012233456899999999999
Q ss_pred CEEEEEeCCceEEEEc
Q 002405 465 MFLAVAGLHGLILYDI 480 (927)
Q Consensus 465 ~~la~ag~dg~i~wd~ 480 (927)
+||+..+..-+++++.
T Consensus 631 kwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATCKTYLLLIDT 646 (794)
T ss_pred cEEEEeecceEEEEEE
Confidence 9999888777777775
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.26 E-value=33 Score=41.76 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=52.6
Q ss_pred eE-EEEEcCCCcEEEEEecCCeEEEEeccC---------CCcc---eEEEeeecCCCCCCCCCCeeEEEECCC---CCEE
Q 002405 259 AV-CASIAPEQQILAVGTRRGVVELYDLAE---------SASL---IRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAF 322 (927)
Q Consensus 259 ~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~---------~~~~---~~~l~~~~~~~~~~h~~~V~~l~~spd---g~~L 322 (927)
.| .+.+||+|++||..+..|.+-+ .+.. .+.. -++......-....+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 45 8899999999999888775433 2211 0111 112221111122245678999999995 5899
Q ss_pred EEEEcCCcEEEEEccC
Q 002405 323 AVGWKSRGLTVWSVSG 338 (927)
Q Consensus 323 asg~~Dg~v~vW~~~~ 338 (927)
++-..|+++|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999964
No 398
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.11 E-value=1.2e+02 Score=36.23 Aligned_cols=51 Identities=14% Similarity=0.366 Sum_probs=36.4
Q ss_pred CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
-.|+||+.. |..+.++.. ..+++-.+.||.|..+ ..-..||++.|++..|.
T Consensus 64 ~~I~If~~s--G~lL~~~~w--------~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILW--------KHGELIGMGWSDDEEL-ICVQKDGTVHVYGLLGE 114 (829)
T ss_pred eeEEEEecc--ccchHHHHh--------cCCCeeeecccCCceE-EEEeccceEEEeecchh
Confidence 458888875 555544433 3458889999977654 45567899999999774
No 399
>PRK13684 Ycf48-like protein; Provisional
Probab=78.48 E-value=72 Score=35.15 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=51.4
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
..+ ++.+.|++.++++|.. |.+.. ..+..++....... .-...++++.+.|+|+.+++|. .|.+.+=+.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~-G~i~~-s~~~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~ 242 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR-GNFYS-TWEPGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDP 242 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC-ceEEE-EcCCCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEec-CCEEEEccC
Confidence 455 8999999988877654 54432 12221222222222 1346789999999999887765 355432234
Q ss_pred cCCeeEEEeccc---cccceecceecCCC
Q 002405 337 SGCRLMSTIRQI---SLSSISSPIVKPNQ 362 (927)
Q Consensus 337 ~~~~~~~~l~~~---~~~~v~s~~~sp~~ 362 (927)
.++........+ ....+.++.+.|++
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCC
Confidence 555443322211 01234555666654
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.23 E-value=0.65 Score=54.88 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=44.8
Q ss_pred EEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEE-----------EECCCCCEEEEEEcCCcE
Q 002405 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI-----------AWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 263 ~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l-----------~~spdg~~Lasg~~Dg~v 331 (927)
-|-++..++..|-.+|+|++-.++. . ....+.+ |...+..+ ..||||+.+|.+..||.+
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~r-a-~~~l~rs--------Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINR-A-LRSLFRS--------HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred ccccccceeeeccCCCceeEeeech-H-HHHHHHh--------cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3444667888888999999988764 2 1112222 44333333 369999999999999999
Q ss_pred EEEEc
Q 002405 332 TVWSV 336 (927)
Q Consensus 332 ~vW~~ 336 (927)
+.|.+
T Consensus 260 ~f~Qi 264 (1283)
T KOG1916|consen 260 GFYQI 264 (1283)
T ss_pred ceeee
Confidence 99986
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.55 E-value=11 Score=42.46 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=56.8
Q ss_pred EeeecCccceeeecccce----e-cCCCC-----eEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 235 CSVSKKGLKLAEFIKIDK----E-LGSGD-----AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 235 ~~~~d~~~~~w~~~~~~~----~-~~h~~-----~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
.|.++..+.-||..-... + .+|.- --|.+-..+| ++|+||.+|.||+||--. ......+.+
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~-~~AKTAlPg------- 469 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG-RRAKTALPG------- 469 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhh-hhhhhcccc-------
Confidence 345566666677642111 1 23321 1255554454 789999999999999732 222233333
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
-..+|..|.-+.||+++...+. ..+-+-++
T Consensus 470 -LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 470 -LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred -cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 5778999999999998876665 45655554
No 402
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.27 E-value=1.1e+02 Score=32.31 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=38.5
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCe-EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
...+ +++.+.+..+++..+-.|. .-+||..+ +..+..-.. .-+.-.-++..-+++.+.+|.+..+
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l------------~daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAAL------------PDAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEecccc------------cccccceeccCceEEecCCceEEec
Confidence 4567 8999988888887776664 56899987 654332111 0111122344555666666766665
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=40 Score=41.87 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=41.6
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEee-CCccceeeeEEEEEEeeCCEEEEEEe
Q 002405 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNY 514 (927)
Q Consensus 453 ~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f-~~~~~e~~~~v~~~~W~~~~li~~~~ 514 (927)
...++++|||-|+.+++|-..|++ -|...-..-+.. +-+..| .+.+.+++|.+....+..|
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEe
Confidence 357899999999999999999999 776543322222 222233 3678899999765444333
No 404
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.17 E-value=12 Score=44.43 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCCeeEEEECC----CCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 307 TGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 307 ~~~V~~l~~sp----dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
.+.+.+++.++ +..+|++-+.|+++|+||+.+++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 34567777777 77899999999999999999998876653
No 405
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.90 E-value=7.4 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=16.4
Q ss_pred CCCceEEEEEccCCCEEEEEeCC
Q 002405 451 QNWPVQHVAASKDGMFLAVAGLH 473 (927)
Q Consensus 451 ~~~~I~~va~spdG~~la~ag~d 473 (927)
....-...+|||||++|+-++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 34456778999999999866544
No 406
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.59 E-value=78 Score=29.43 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=62.3
Q ss_pred EEcCCCcEEEEEecCCeEEEEeccCC-------CcceEEEeeecCCCCCCCCCCeeEEEECC-----CCCEEEEEEcCCc
Q 002405 263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRG 330 (927)
Q Consensus 263 ~~sp~~~~la~g~~Dg~V~vwd~~~~-------~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-----dg~~Lasg~~Dg~ 330 (927)
.|.....-|+.++.-|+|-|++.... ...+..|.. ...|++|+=.| +...|..|+. ..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 45555667888888889999876531 123344443 44567765433 3457888877 68
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEE
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAI 388 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~ 388 (927)
+-.||+....-+..- +- ...|+++.+-.-+......++.|. .+.-++.++.+++.+
T Consensus 75 llaYDV~~N~d~Fyk-e~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 75 LLAYDVENNSDLFYK-EV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEEEEcccCchhhhh-hC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 999999765432211 11 345666655433322223444444 333344455554443
No 407
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=73.08 E-value=5.4 Score=25.66 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=19.1
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEE
Q 002405 70 NLQAVWSPDTKLIAVVTSSLYLHIFK 95 (927)
Q Consensus 70 ~~~v~wspDg~~Lav~t~dg~l~i~~ 95 (927)
+.+++-++ .++|++|+.+++|+|+
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 35666664 5999999999999984
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.67 E-value=50 Score=36.92 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCc---ceEEEeeecCCCC-CCCCCCeeEEEECCCCCEEEEEE
Q 002405 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~---~~~~l~~~~~~~~-~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.+..+++.+++ ++++ +.+...++.+.+..+. ....+- ..++.. ..+......++|.|||.+.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCCEEEecc
Confidence 34478888998 5554 4444334445432111 111111 111111 11234578899999998666544
No 409
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.47 E-value=81 Score=29.34 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC----CCCEEEEEEcCCcEEEEEccCCeeE
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLM 342 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp----dg~~Lasg~~Dg~v~vW~~~~~~~~ 342 (927)
+...|..|+.. ++..||+.. ...+.. +. -.+.|+++.+-. +...+.+|+ +..|.-+|..|.+.+
T Consensus 63 ~~D~LliGt~t-~llaYDV~~-N~d~Fy-ke--------~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 63 GRDCLLIGTQT-SLLAYDVEN-NSDLFY-KE--------VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred CcCEEEEeccc-eEEEEEccc-Cchhhh-hh--------CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 45678887765 788999987 332221 11 346678877732 344555554 478888888887776
Q ss_pred EEec
Q 002405 343 STIR 346 (927)
Q Consensus 343 ~~l~ 346 (927)
.+..
T Consensus 131 WtVt 134 (136)
T PF14781_consen 131 WTVT 134 (136)
T ss_pred EEec
Confidence 6643
No 410
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=71.46 E-value=59 Score=35.28 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=51.9
Q ss_pred EEEEcCCCcEEEEEec-CCeEEEEeccC-CCcce--EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-cEEEEE
Q 002405 261 CASIAPEQQILAVGTR-RGVVELYDLAE-SASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWS 335 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~-Dg~V~vwd~~~-~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg-~v~vW~ 335 (927)
.++||||++.|-.+-. .+.|.-|+++. .+..- +.... ...+.|.--.++.-.||++-+++-.+| .|.+|+
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----ccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 7999999987666544 47787777762 11110 10110 001334445566777888775544444 888998
Q ss_pred ccCCeeEEEeccccccceeccee
Q 002405 336 VSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
.. ++++...+-. ...+++++|
T Consensus 242 pd-G~l~~~i~lP-~~~~t~~~F 262 (307)
T COG3386 242 PD-GKLLGEIKLP-VKRPTNPAF 262 (307)
T ss_pred CC-CcEEEEEECC-CCCCccceE
Confidence 88 5666665543 233444444
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=69.92 E-value=1.2e+02 Score=33.95 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCcEEEEEe-----------cCC-eEEEEeccCC-Ccc--eEEEeeecCCCCCCCCCCeeEEEECCCCCE
Q 002405 257 GDAVCASIAPEQQILAVGT-----------RRG-VVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~-----------~Dg-~V~vwd~~~~-~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~ 321 (927)
..++.++|.++|++.++-. ..+ .|.+++-.+. +.. ...+.. .-...+.++|.++| .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--------~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--------ELSMVTGLAVAVGG-V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--------CCCCccceeEecCC-E
Confidence 4566788888888776642 223 5666653321 221 122222 22345789999999 4
Q ss_pred EEEEEcCCcEEEEEcc
Q 002405 322 FAVGWKSRGLTVWSVS 337 (927)
Q Consensus 322 Lasg~~Dg~v~vW~~~ 337 (927)
++ +..+..+++.+..
T Consensus 85 yV-~~~~~i~~~~d~~ 99 (367)
T TIGR02604 85 YV-ATPPDILFLRDKD 99 (367)
T ss_pred EE-eCCCeEEEEeCCC
Confidence 44 4444433444553
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=69.48 E-value=1.5e+02 Score=33.55 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=32.9
Q ss_pred EEEEcCCCcEEEE-EecCCeEEEEeccCCCcceEEEeee---cC-----CCCC--CCCCCeeEEEECCCCCEEEEEE
Q 002405 261 CASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLY---DW-----GYSM--DDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 261 ~v~~sp~~~~la~-g~~Dg~V~vwd~~~~~~~~~~l~~~---~~-----~~~~--~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.+.+|.|.++|-+ +..+|.||.||+.+...+..+-+.. .. +... .-.|...-|..|-||++|.+..
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 8899999998765 5578999999998744332221110 00 0000 1134457788899999887654
No 413
>PHA02713 hypothetical protein; Provisional
Probab=68.89 E-value=1e+02 Score=36.70 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=24.4
Q ss_pred CCCEEEEEeCCc--eE-EEEccCCcEEeeCC
Q 002405 463 DGMFLAVAGLHG--LI-LYDIRQKKWRVFGD 490 (927)
Q Consensus 463 dG~~la~ag~dg--~i-~wd~~s~~w~~f~~ 490 (927)
+|+..++||.+| .+ .||..+++|.....
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 899999999999 66 99999999986543
No 414
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.30 E-value=7.4 Score=27.26 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=18.5
Q ss_pred cccccEEEEcCCccEEEEEecC---cEEEEE
Q 002405 67 EGENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~d---g~l~i~ 94 (927)
.+......|||||+.|+-++.. |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456789999999988876643 444444
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=68.26 E-value=1.8e+02 Score=35.19 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=51.2
Q ss_pred CeE-EEEEc--CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-----CC-EEEEEEcC
Q 002405 258 DAV-CASIA--PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-----NS-AFAVGWKS 328 (927)
Q Consensus 258 ~~v-~v~~s--p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-----g~-~Lasg~~D 328 (927)
... .++++ ...++||+++....|.||-......... ... ...|..-|-+|+|-++ |. .+++++-.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~--~~~----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFY--HVP----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccc--ccc----ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 355 88998 8899999999999999988764111111 000 1115566889999774 33 78888889
Q ss_pred CcEEEEEc
Q 002405 329 RGLTVWSV 336 (927)
Q Consensus 329 g~v~vW~~ 336 (927)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99999887
No 416
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.04 E-value=47 Score=37.70 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=46.7
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCc---------e--eEEEEEeeChHhh---hhcccccEEEEcCCc---cEEEEEec
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQH---------K--VRLGKYKRDSESV---QREGENLQAVWSPDT---KLIAVVTS 87 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~---------~--~~l~~~~r~~~sl---~~~G~~~~v~wspDg---~~Lav~t~ 87 (927)
|..|+.|+++|.++.+.+.|-...+. + +..+...--...+ ..+=....++|.|++ ..|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 44677799999888776666544100 1 0111110000000 012234578999998 67999999
Q ss_pred CcEEEEEEEEecCce
Q 002405 88 SLYLHIFKVQITEKS 102 (927)
Q Consensus 88 dg~l~i~~l~~~~~~ 102 (927)
|+.+|+|++......
T Consensus 189 dnviRiy~lS~~tel 203 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTEL 203 (741)
T ss_pred CcEEEEEecCCcchh
Confidence 999999999755443
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.89 E-value=22 Score=36.41 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=49.1
Q ss_pred EcCCCcEEEEEecCCeEEEEeccCCCcceEEE-eeecC-CC----CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTV-SLYDW-GY----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 264 ~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l-~~~~~-~~----~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
+..++++|.+-+.+|.+++||+.+ ++.+..- +.... .. .......|..+..+.+|.-+++-+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 456778888889999999999987 4322111 00000 00 002567789999999998887765 4788899875
Q ss_pred CC
Q 002405 338 GC 339 (927)
Q Consensus 338 ~~ 339 (927)
=+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=66.64 E-value=1.1e+02 Score=33.51 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=14.5
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
.|.+ ..|+|.|||.+.++.++.+.
T Consensus 113 ~H~g--~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 113 NHNG--GGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp SS-E--EEEEE-TTSEEEEEEB-TTT
T ss_pred CCCC--ccccCCCCCcEEEEeCCCCC
Confidence 3544 55999999987666665443
No 419
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=65.91 E-value=41 Score=37.34 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.2
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 69 ~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
.+..+...|||+.|.+-+. ..+.+|++..
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~ 250 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDK 250 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecc
Confidence 4456889999999999886 7899999874
No 420
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=2.3e+02 Score=31.82 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=66.1
Q ss_pred EEEEeCCc-EEEEeeecCccceeeeccccee--------cCCCCeEEEEEcCCCcEEEEEecC---CeEEEEeccCCCcc
Q 002405 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVCASIAPEQQILAVGTRR---GVVELYDLAESASL 291 (927)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~--------~~h~~~v~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~ 291 (927)
++++|+|. .+++...++.+.+.+......+ .-...+-.++++|+|..+-+.... +++...|..+ +..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceE
Confidence 44566666 3444434555554443322111 112334478999999865554433 5888888765 333
Q ss_pred eEE-EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEEEEccCCeeEEEec
Q 002405 292 IRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 292 ~~~-l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g~v~vW~~~~~~~~~~l~ 346 (927)
... ... -++.-..++.+|+|+.+-+.... +++.+-|..+........
T Consensus 244 ~~~~~~~--------~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 244 TATDLPV--------GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEecccc--------ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 222 111 11134568999999998888544 788888887766655543
No 421
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=64.96 E-value=77 Score=36.34 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=49.2
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce---------e--cCCCCeEEEEEcCCC------cEEEEEe--c--------
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---------E--LGSGDAVCASIAPEQ------QILAVGT--R-------- 276 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---------~--~~h~~~v~v~~sp~~------~~la~g~--~-------- 276 (927)
+++.|||+++++....+.++.++...... . .+......++++|++ ++|-+.. .
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~ 114 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPN 114 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccC
Confidence 44567777777665556666554322110 1 133333499999997 2333221 1
Q ss_pred CCeEEEEeccCCC-c---ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 277 RGVVELYDLAESA-S---LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 277 Dg~V~vwd~~~~~-~---~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
...|.-|.++... . ....+.. .+....|.+ ..|+|.|||++.++.++
T Consensus 115 ~~~I~R~~l~~~~~~l~~~~~Il~~--lP~~~~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 115 HTKIVRYTYDKSTQTLEKPVDLLAG--LPAGNDHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CcEEEEEEecCCCCccccceEEEec--CCCCCCcCC--ceEEECCCCcEEEEECC
Confidence 2234445543211 1 1112222 122224654 45789999986665554
No 422
>PHA03098 kelch-like protein; Provisional
Probab=63.65 E-value=1.8e+02 Score=34.36 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCCEEEEEeCC-----ceE-EEEccCCcEEeeCC
Q 002405 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 490 (927)
Q Consensus 463 dG~~la~ag~d-----g~i-~wd~~s~~w~~f~~ 490 (927)
+|+.++.||.+ ..+ .||..+++|..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 78888888875 356 99999999987754
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=63.30 E-value=20 Score=40.41 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=56.5
Q ss_pred EEEEcCCCcEEEEEecCCeEEE---EeccCCC----cceEEEeeecCCCCCCCCCCeeEEEEC-----------CCCCEE
Q 002405 261 CASIAPEQQILAVGTRRGVVEL---YDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNSAF 322 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~v---wd~~~~~----~~~~~l~~~~~~~~~~h~~~V~~l~~s-----------pdg~~L 322 (927)
+++.+|++.+||.|..+..+-+ |+.+..+ .....+.+. ...+....|+++.|- ||...+
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~---l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I 82 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGP---LDDEPGECITSILCLPLSSQKRSTGGPDWTCI 82 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeee---ccCCCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence 5788999999999988877665 6442212 111222221 000011456666553 567899
Q ss_pred EEEEcCCcEEEEEccCCeeEEEeccccccceecceec
Q 002405 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
|+|..+|.|++++..|..+...+ -| ..+|..+...
T Consensus 83 ~VG~ssG~vrfyte~G~LL~~Q~-~h-~~pV~~ik~~ 117 (415)
T PF14655_consen 83 AVGTSSGYVRFYTENGVLLLSQL-LH-EEPVLKIKCR 117 (415)
T ss_pred EEEecccEEEEEeccchHHHHHh-cC-ccceEEEEec
Confidence 99999999999998765433222 23 4556555543
No 424
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=63.07 E-value=1.4e+02 Score=33.78 Aligned_cols=113 Identities=12% Similarity=-0.020 Sum_probs=58.7
Q ss_pred EEEeCCcEEEEeeecCccceeeeccc--cee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcce--EEEeee
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKI--DKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI--RTVSLY 298 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~--~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~--~~l~~~ 298 (927)
..++||++++.+....-.+.|+.-.. +.. ......+ .+.+.+++.+++++ .+|.+. +..+. +... ..+...
T Consensus 245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~-G~~~~~~~f~~~ 321 (398)
T PLN00033 245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGT-GLTEEDFDFEEA 321 (398)
T ss_pred EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCC-CCcccccceeec
Confidence 34677777776654332223322100 000 1222334 88899999988775 556643 33333 3211 122221
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
... .-...+.++.|.+|+..+++|.. |.+.. ...+++.....
T Consensus 322 ~~~---~~~~~l~~v~~~~d~~~~a~G~~-G~v~~-s~D~G~tW~~~ 363 (398)
T PLN00033 322 DIK---SRGFGILDVGYRSKKEAWAAGGS-GILLR-STDGGKSWKRD 363 (398)
T ss_pred ccC---CCCcceEEEEEcCCCcEEEEECC-CcEEE-eCCCCcceeEc
Confidence 100 01235899999999988877754 54444 44555554443
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.60 E-value=17 Score=40.24 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=48.7
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCce--eEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~ 100 (927)
+.|-..++.+..+..+.+.=|-+..++ +++.... ...|++.++.||||.+.|||.-++..+.+++...+.
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm------~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM------DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee------cCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 555555665555566666677664332 3333222 246899999999999999999999999999875444
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=60.61 E-value=1.6e+02 Score=30.18 Aligned_cols=94 Identities=9% Similarity=0.106 Sum_probs=59.5
Q ss_pred EEEEcCCCcE-EEEEecCCeEEEEeccCC-Cc-----ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 261 CASIAPEQQI-LAVGTRRGVVELYDLAES-AS-----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 261 ~v~~sp~~~~-la~g~~Dg~V~vwd~~~~-~~-----~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
.++|+.+.+. -.+-+.+-+|.-||.+.. +. .+..++..+. .+|.-| -.++...+|.+.++.+.-++|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---~e~~~P-DGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---FESLEP-DGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC---cCCCCC-CcceEccCCcEEEEEecCcEEEE
Confidence 4577777654 446677888988995432 21 1222222110 011111 22444568898889998899999
Q ss_pred EEccCCeeEEEeccccccceecceec
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
.|..+|+.+.+++-. ...+++++|-
T Consensus 238 ~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred ECCCCCcEEEEEEcC-CCceEEEEec
Confidence 999999988888766 6667777774
No 427
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=59.69 E-value=3.1e+02 Score=32.71 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=40.3
Q ss_pred EccCCCEEEEEeCCc------eE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEE-EEEEeecCCCeEEEEEeeC
Q 002405 460 ASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII-VVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 460 ~spdG~~la~ag~dg------~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~l-i~~~~~~~~~~~~l~l~~~ 528 (927)
..-+|+..++||.+| .+ .||..+++|+....-...+ ...+++-.++.| ++|+.........+..|+.
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 345899999999654 45 8999999998765432222 123455555544 5554443333344666665
No 428
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=59.42 E-value=39 Score=38.16 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=50.9
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEE---------C----CC-CCEEEE-E
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW---------T----PD-NSAFAV-G 325 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~---------s----pd-g~~Las-g 325 (927)
+++.+|++++.|+...=|.|.++|+.. +..++.+++-. .+.-+.+....= + +. ..+|+. +
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYR----dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYR----DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCc----cceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 899999999999977779999999987 76677666621 001011110000 0 00 123333 4
Q ss_pred EcCCcEEEEEccCCeeEEEec
Q 002405 326 WKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
-.-|.+-||++..+..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 456889999998877666554
No 429
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.32 E-value=2.4e+02 Score=31.85 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=62.6
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
.+..++++.++++|..-...+-||- +.. ...... .....++++.|.+||..++++. +|+ .+|+...+
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g~-~G~-l~~S~d~G 310 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNR-------ASARRIQNMGWRADGGLWLLTR-GGG-LYVSKGTG 310 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCC---CCcceEEecC-------CCccceeeeeEcCCCCEEEEeC-Cce-EEEecCCC
Confidence 5667889988888765543444442 322 122222 1356689999999999887764 355 45666555
Q ss_pred ee-----EEEeccc-cccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEE
Q 002405 340 RL-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAI 388 (927)
Q Consensus 340 ~~-----~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~ 388 (927)
+. +..+... ....+.++.+.+++ ..++.|. -.+....++++-|..
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~ 362 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKR 362 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeE
Confidence 42 2222211 12246677777766 6666665 233334455555444
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.13 E-value=1.2e+02 Score=34.55 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=26.8
Q ss_pred CeeEEEECCCC---CEEEEEEcCCcEEEEEccCCeeE
Q 002405 309 PVSCIAWTPDN---SAFAVGWKSRGLTVWSVSGCRLM 342 (927)
Q Consensus 309 ~V~~l~~spdg---~~Lasg~~Dg~v~vW~~~~~~~~ 342 (927)
.+..++|+|+. ..|..-..|.++|+||....+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46778999975 67888888999999999765433
No 431
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=56.17 E-value=3e+02 Score=34.21 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=60.1
Q ss_pred EEEEEcC-CCcEEEEEecCCeEEEEeccCC-CcceEE--EeeecCC---CCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 260 VCASIAP-EQQILAVGTRRGVVELYDLAES-ASLIRT--VSLYDWG---YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 260 v~v~~sp-~~~~la~g~~Dg~V~vwd~~~~-~~~~~~--l~~~~~~---~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
+.++||| +.+.||+-...|...||++... ...... +.....+ ..+.....-..+.|.++-..|.++.. ..+.
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~ 227 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLM 227 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceE
Confidence 3899999 4668999999999999999320 111111 1111111 01112234458999999889988887 6889
Q ss_pred EEEccCCeeEEEec-cccccceecceecCC
Q 002405 333 VWSVSGCRLMSTIR-QISLSSISSPIVKPN 361 (927)
Q Consensus 333 vW~~~~~~~~~~l~-~~~~~~v~s~~~sp~ 361 (927)
+.|+.+......+. ......+..+.-+|.
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCC
Confidence 99998764322121 111344555555554
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=56.03 E-value=1.5e+02 Score=35.42 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEEC--CCCCEEEEEEcCCcEEEE
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT--PDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s--pdg~~Lasg~~Dg~v~vW 334 (927)
..+..+.-|.-++.-++-+...++.|||... +.....-.- ...+.|.++.|+ |||+.+.+-+-.+.|.++
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f-------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESF-------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLY 101 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeee-------cCCCceeeceeeecCCCCEEEEEEcCcEEEEE
Confidence 3444455555555555544556899999976 432221111 157899999996 699977766667889888
Q ss_pred Ec
Q 002405 335 SV 336 (927)
Q Consensus 335 ~~ 336 (927)
.-
T Consensus 102 ~Q 103 (631)
T PF12234_consen 102 TQ 103 (631)
T ss_pred Ec
Confidence 64
No 433
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=55.48 E-value=3.9e+02 Score=31.13 Aligned_cols=75 Identities=11% Similarity=-0.020 Sum_probs=41.6
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCee--EEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~--~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
..+.+++.||.+.-.|..+ ++.+-........ . .+...+. .++.. ++..+..++.|+.+.-+|..+++.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~~-~-~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 62 GDMYFTTSHSALFALDAAT-GKVLWRYDPKLPA-D-RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CEEEEeCCCCcEEEEECCC-ChhhceeCCCCCc-c-ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 3455567788888888877 5444333221000 0 0000110 01111 22567777888999999999888776665
Q ss_pred c
Q 002405 347 Q 347 (927)
Q Consensus 347 ~ 347 (927)
.
T Consensus 138 ~ 138 (488)
T cd00216 138 N 138 (488)
T ss_pred C
Confidence 3
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=53.65 E-value=11 Score=45.17 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=64.8
Q ss_pred EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 137 ~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
.+++..-++-++.++|.++++.|+.....-+ .+|...++++++
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~-------------------------------------rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALRSLF-------------------------------------RSHSQRVTDMAF 232 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHHHHH-------------------------------------HhcCCCcccHHH
Confidence 3455556677778888999988875432111 113333334333
Q ss_pred ccC-cceEEEEEeCCcEEEEeeecCccceeeec-ccc-------eecCCCC-e-EEEEEcCC---------CcEEEEEe-
Q 002405 217 CLP-MRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KID-------KELGSGD-A-VCASIAPE---------QQILAVGT- 275 (927)
Q Consensus 217 ~~~-~~~~~~~s~dG~~~~~~~~d~~~~~w~~~-~~~-------~~~~h~~-~-v~v~~sp~---------~~~la~g~- 275 (927)
-.. ......++|||+.+++...||.++.|... .++ .|..|++ + +|.-+..+ -.++.+++
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence 222 23345579999999999999999988753 222 1345552 2 24443332 12344444
Q ss_pred cCCeEEEEeccC
Q 002405 276 RRGVVELYDLAE 287 (927)
Q Consensus 276 ~Dg~V~vwd~~~ 287 (927)
.+..+++|.-..
T Consensus 313 ~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 313 VNREEKFWAEAP 324 (1283)
T ss_pred CCcceeEeeccc
Confidence 345678887543
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=53.20 E-value=3.4e+02 Score=29.74 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=42.8
Q ss_pred CCCCeEEEEEcC-------CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 255 GSGDAVCASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 255 ~h~~~v~v~~sp-------~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.|..+..+.|.. +|++++.....+.|....++..+.....-.. . ....+.+..|++.|||.+.++-..
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~----~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF-L----GGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE-C----TTSSS-EEEEEEETTSEEEEEE-T
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc-c----ccCCCCceEEEEcCCCeEEEEECC
Confidence 344445666653 4567777776778887777652322111111 0 114458999999999999888887
Q ss_pred CCcE
Q 002405 328 SRGL 331 (927)
Q Consensus 328 Dg~v 331 (927)
+|.|
T Consensus 326 ~G~i 329 (331)
T PF07995_consen 326 DGKI 329 (331)
T ss_dssp TTTE
T ss_pred CCeE
Confidence 7776
No 436
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=52.20 E-value=3.4e+02 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=17.6
Q ss_pred EEEEccCCCEEEEEeCCc-eE-EEEccC
Q 002405 457 HVAASKDGMFLAVAGLHG-LI-LYDIRQ 482 (927)
Q Consensus 457 ~va~spdG~~la~ag~dg-~i-~wd~~s 482 (927)
.+++..+|.+-+++..+| -+ .|+...
T Consensus 217 G~~vDadG~lw~~a~~~g~~v~~~~pdG 244 (307)
T COG3386 217 GMAVDADGNLWVAAVWGGGRVVRFNPDG 244 (307)
T ss_pred ceEEeCCCCEEEecccCCceEEEECCCC
Confidence 467788888776555554 45 888763
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=51.74 E-value=61 Score=32.75 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=42.6
Q ss_pred EEEEecCeEEEEEccCeEEEeecCC-ceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec------CcEEEEE
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQ-HKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS------SLYLHIF 94 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~-~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~------dg~l~i~ 94 (927)
+..+..+.+|++++...|.+|++.+ .+.++..+ .+-|.+..+..+.-|++|++--. ..++|+|
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-------~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF-------STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEE-------cchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3344435566667788999999852 23333333 34578889999999999998432 2378887
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=51.28 E-value=67 Score=31.51 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=26.8
Q ss_pred CCCeeEEEECCC------CCEEEEEEcCCcEEEEEccCC
Q 002405 307 TGPVSCIAWTPD------NSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 307 ~~~V~~l~~spd------g~~Lasg~~Dg~v~vW~~~~~ 339 (927)
.+.|.+++|||- +.+||+...++.+.||.-.+.
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 347999999993 348899999999999987653
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=49.79 E-value=3.7e+02 Score=29.10 Aligned_cols=119 Identities=11% Similarity=0.156 Sum_probs=56.6
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
...+ .+..+++|+++|++..-....-|+-.. ..-...-+. -...|.+|.|+||+...+++ ..|.++.=+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-~~w~~~~r~--------~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-TTWQPHNRN--------SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE----------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCC-ccceEEccC--------ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 3455 788899999999987666666777432 111221122 46789999999998877765 556665555
Q ss_pred c-cCCeeEEE--ecc-ccccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEEE
Q 002405 336 V-SGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 336 ~-~~~~~~~~--l~~-~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (927)
. ........ ... ...-.+..+++.++. +.+++|. -.++-+.++++-+..-
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceEC
Confidence 1 22221111 000 001225666777665 6655554 3344445555555443
No 440
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=49.71 E-value=6.8e+02 Score=32.15 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=19.2
Q ss_pred EEEEcCCCc--EEEEEecCCeEEEEeccC
Q 002405 261 CASIAPEQQ--ILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 261 ~v~~sp~~~--~la~g~~Dg~V~vwd~~~ 287 (927)
++.|--+|. .++++.+|++|++|-...
T Consensus 1186 s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1186 STEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 455555544 477889999999988754
No 441
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.60 E-value=87 Score=31.99 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=40.1
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp 317 (927)
.+++.-+|.+.++....|+|...|..+ ++.+..++. .+..|+|++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eikl--------Pt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIKL--------PTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCC-CcEEEEEEc--------CCCceEEEEecC
Confidence 445566899988889999999999988 888888887 688899999963
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.35 E-value=76 Score=32.53 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=44.7
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEee-ChHhhh---------hcccccEEEEcCCccEEEEEecCcE
Q 002405 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKR-DSESVQ---------REGENLQAVWSPDTKLIAVVTSSLY 90 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r-~~~sl~---------~~G~~~~v~wspDg~~Lav~t~dg~ 90 (927)
.+++.+..+|.++.++ .++.+++||+.+... .+.. +...+- ....+..+..+.+|.-|++-+ +|.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~---~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKA---VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCee---ccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 5667788888876666 588999999963222 1222 222221 234556788888887666544 466
Q ss_pred EEEEEEE
Q 002405 91 LHIFKVQ 97 (927)
Q Consensus 91 l~i~~l~ 97 (927)
...|+.+
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 6777654
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=48.06 E-value=55 Score=33.06 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=34.1
Q ss_pred ecCCeEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 275 TRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 275 ~~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
...+.|.+|++.+. .....+++. -+.|..+.++.-|.+|+|-=++
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T---------v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST---------VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc---------hhheeEEEeccccceEEEEEee
Confidence 66678999999841 344555554 5889999999999999986543
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=47.64 E-value=4.2e+02 Score=29.12 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=28.9
Q ss_pred eEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccC-CcEEee
Q 002405 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ-KKWRVF 488 (927)
Q Consensus 438 ~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s-~~w~~f 488 (927)
.|+....|.. .....+..+++.|+++.++ +|.+|.++..... ..|+..
T Consensus 247 sW~~~~~~~~--~~~~~l~~v~~~~~~~~~~-~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 247 SWSKPIIPEI--TNGYGYLDLAYRTPGEIWA-GGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred ccccccCCcc--ccccceeeEEEcCCCCEEE-EcCCCeEEEeCCCCCCCeEC
Confidence 4665444421 1224578899999887554 5678877666554 357654
No 445
>PRK10115 protease 2; Provisional
Probab=46.98 E-value=6.3e+02 Score=30.99 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=33.5
Q ss_pred EEEEEecCeEEEEEccC------eEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC
Q 002405 24 IIYFKVNNGLLLIASPC------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (927)
Q Consensus 24 iv~fs~dg~lla~~~~~------~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d 88 (927)
.+.+||||++||.+.|. ++++-+.. .+..+ .+.+. +.-..++|+||++.|+..+.+
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l------~~~i~--~~~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWY------PELLD--NVEPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCC------Ccccc--CcceEEEEeeCCCEEEEEEec
Confidence 36789999999877321 45666663 22111 11111 111469999999988777653
No 446
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=45.38 E-value=51 Score=26.01 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhHh
Q 002405 874 CFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVS 924 (927)
Q Consensus 874 cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~r 924 (927)
.++.|+++.|..++-=+....+. +.+....|.+..++.|+++-|.+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36788888888888766666655 35567788899999999999988764
No 447
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=43.92 E-value=4.5e+02 Score=28.43 Aligned_cols=249 Identities=16% Similarity=0.165 Sum_probs=97.2
Q ss_pred CCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEec
Q 002405 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~ 285 (927)
....+.+|.|.......++ -..|.++-| .|+.. .|.......-..-.-.. +++|..+ ...++| ..|. |+..
T Consensus 15 t~~~l~dV~F~d~~~G~~V-G~~g~il~T--~DGG~-tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~--ll~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAV-GAYGTILKT--TDGGK-TWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL--LLHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEE-ETTTEEEEE--SSTTS-S-EE-----S-----EEEEEEEETT-EEEEEE-ETTE--EEEE
T ss_pred CCCceEEEEEecCCEEEEE-ecCCEEEEE--CCCCc-cccccccCCCccceeeEEEEEecCC-ceEEEc-CCce--EEEe
Confidence 3457888888755555554 345655443 33322 25433211100001123 6777654 445554 4554 3333
Q ss_pred cCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC
Q 002405 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (927)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~ 365 (927)
.+.+..-..+.... .-.+....+....++...+++ ..|.| .-...+++-...+.......+..+..++++
T Consensus 87 ~DgG~tW~~v~l~~-----~lpgs~~~i~~l~~~~~~l~~-~~G~i-y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG--- 156 (302)
T PF14870_consen 87 TDGGKTWERVPLSS-----KLPGSPFGITALGDGSAELAG-DRGAI-YRTTDGGKTWQAVVSETSGSINDITRSSDG--- 156 (302)
T ss_dssp SSTTSS-EE----T-----T-SS-EEEEEEEETTEEEEEE-TT--E-EEESSTTSSEEEEE-S----EEEEEE-TTS---
T ss_pred cCCCCCcEEeecCC-----CCCCCeeEEEEcCCCcEEEEc-CCCcE-EEeCCCCCCeeEcccCCcceeEeEEECCCC---
Confidence 44355444433210 012333444444555544443 33433 233345554444433324556677777777
Q ss_pred cccccccc---eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
..++.+. -.+.|++....-.........+|-.+.| +....+|.+..+.. +.... .......|+..
T Consensus 157 -~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf---------~~~~~lw~~~~Gg~-~~~s~-~~~~~~~w~~~ 224 (302)
T PF14870_consen 157 -RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF---------SPDGNLWMLARGGQ-IQFSD-DPDDGETWSEP 224 (302)
T ss_dssp --EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE----------TTS-EEEEETTTE-EEEEE--TTEEEEE---
T ss_pred -cEEEEECcccEEEEecCCCccceEEccCccceehhcee---------cCCCCEEEEeCCcE-EEEcc-CCCCccccccc
Confidence 5554433 3445665432111111122344433333 12233455443322 22222 11122345543
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCc-EEee
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRVF 488 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~-w~~f 488 (927)
..|.. ...+-+..+++.+++...|+|+ .|.++.+...|+ |+.-
T Consensus 225 ~~~~~--~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 225 IIPIK--TNGYGILDLAYRPPNEIWAVGG-SGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp B-TTS--S--S-EEEEEESSSS-EEEEES-TT-EEEESSTTSS-EE-
T ss_pred cCCcc--cCceeeEEEEecCCCCEEEEeC-CccEEEeCCCCccceEC
Confidence 33332 2234488899999988777555 566767776664 7653
No 448
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=43.53 E-value=1.4e+02 Score=27.47 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHh---cchhHHHHhhhcccccccchHHhHhccCChHHH
Q 002405 794 LEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN---FPEYLNVVVSVARKTDGRHWADLFSAAGRSTEL 870 (927)
Q Consensus 794 LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~---~~~~l~ivv~c~RK~e~~~W~~lF~~~g~P~~l 870 (927)
+|+++.++..+++.. .| ..++..+.+.-.+ ++...+++-.++.+..-+.|...++++ .|
T Consensus 4 ~e~~v~eAT~~d~~g---------p~-----~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL----~l 65 (125)
T PF01417_consen 4 LELKVREATSNDPWG---------PP-----GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKAL----TL 65 (125)
T ss_dssp HHHHHHHHTSSSSSS----------------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHH----HH
T ss_pred HHHHHHHHcCCCCCC---------cC-----HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHH----HH
Confidence 566666666555421 12 2677777766433 334455555555556999999999984 77
Q ss_pred HHHHHhcCcHHHH------hhHHhhhhhccCc-----c---hhHHHHHHHHHHHHh
Q 002405 871 FEECFQRRWYRTA------ACYILVIAKLEGP-----A---VSQYSALRLLQATLD 912 (927)
Q Consensus 871 f~~cl~~~~l~~a------~~yL~v~~~~~~~-----~---~~~~~~~~ll~~al~ 912 (927)
++-++.+|.-+-. ...+--++++... + .-|+.|.+|++..-+
T Consensus 66 l~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 66 LEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 8888888875333 3334445555331 2 256667777766554
No 449
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.28 E-value=1.7e+02 Score=32.02 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=30.3
Q ss_pred cccchHHhHhccC---Ch---HHHHHHHHhcCcHHHHhhHHhhh
Q 002405 853 DGRHWADLFSAAG---RS---TELFEECFQRRWYRTAACYILVI 890 (927)
Q Consensus 853 e~~~W~~lF~~~g---~P---~~lf~~cl~~~~l~~a~~yL~v~ 890 (927)
+.+.|..|+.-.+ +| .-+++.|++.|+-+.|..|+-=+
T Consensus 220 ~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 220 ENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKI 263 (319)
T ss_pred hcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4577888877554 55 47899999999999999998753
No 450
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=43.25 E-value=4.7e+02 Score=29.52 Aligned_cols=62 Identities=19% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (927)
.+.|++++|-..+.+++++.. ....||..+ +.+..+... ..++...-+.|.+++|. ||+++.
T Consensus 89 sgrVsMah~~~sq~V~i~G~~-~gYrYdgat--~~l~~~~~~-~~~p~y~~g~v~Dv~~~-dGryVw 150 (469)
T PF11134_consen 89 SGRVSMAHSGGSQAVAINGKL-KGYRYDGAT--KTLSNWPTD-EGYPQYDLGDVVDVTRL-DGRYVW 150 (469)
T ss_pred CceEEEEeCCceeEEEEcccc-ceEEEechh--hHhhcCCCc-CcccccCccceeEEEec-cceEEE
Confidence 577899999888878876542 234455443 222222110 00111134668888886 787776
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=42.82 E-value=6e+02 Score=29.55 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=21.4
Q ss_pred cCCCEEEEEeCC-----ceE-EEEccCCcEEee
Q 002405 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (927)
Q Consensus 462 pdG~~la~ag~d-----g~i-~wd~~s~~w~~f 488 (927)
-+|+..++||.+ ..+ .||..+++|...
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 378888899865 356 999999999754
No 452
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=42.51 E-value=92 Score=37.01 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEEcC----CCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 261 CASIAP----EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 261 ~v~~sp----~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
.+++++ +..+|++-+.|+++|+||+.+ +.++.+...
T Consensus 219 ~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~~~ 258 (547)
T PF11715_consen 219 SLAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATIDL 258 (547)
T ss_dssp EEEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEEET
T ss_pred eEEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc
Confidence 667776 778999999999999999998 777665544
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=41.72 E-value=3.6e+02 Score=30.68 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=35.4
Q ss_pred CeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 519 NTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 519 ~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
-+..|.+|..+...-...+-...+|+ |+.+.+..|.+++++++..+.-|++.
T Consensus 153 ~DG~L~~feqe~~~f~~~lp~~llPg-Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 153 MDGSLSFFEQESFAFSRFLPDFLLPG-PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCceEEEEeCCcEEEEEEcCCCCCCc-CeEEeecCCEEEEecCceeEEEecHH
Confidence 44678888775222111222233455 78888899999999999999999985
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=40.81 E-value=4.6e+02 Score=28.67 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=41.0
Q ss_pred EEEEcCCCcEEEEEecC------CeEEEEeccCCCcceEEEeeec-CC------CCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 261 CASIAPEQQILAVGTRR------GVVELYDLAESASLIRTVSLYD-WG------YSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~D------g~V~vwd~~~~~~~~~~l~~~~-~~------~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.+++.+++.++++-=.+ -.|.-++.+ +.....+.... +. .........-+|+++|||+.|.++-+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 77887888887775555 667777754 55544442211 10 11124567889999999997776655
No 455
>PRK10115 protease 2; Provisional
Probab=40.41 E-value=7.8e+02 Score=30.19 Aligned_cols=105 Identities=6% Similarity=-0.067 Sum_probs=57.4
Q ss_pred EEEEeCCcEEEEeeecCc-----cceeeecccceec-CCCCe-EEEEEcCCCcEEEEEecC------CeEEEEeccCCC-
Q 002405 224 FVLYSNGQLMSCSVSKKG-----LKLAEFIKIDKEL-GSGDA-VCASIAPEQQILAVGTRR------GVVELYDLAESA- 289 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~-----~~~w~~~~~~~~~-~h~~~-v~v~~sp~~~~la~g~~D------g~V~vwd~~~~~- 289 (927)
+.++|||+.++.+.+.+. +.+-+..+++.+. ..... ..++|++|++.|.....+ ..|..+++.+..
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 345889998887765432 3344444443221 11122 268999999877766543 367777877621
Q ss_pred cceEEEeeecCCCCCCCCCCee-EEEECCCCCEEEEEEcC---CcEEEEEc
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKS---RGLTVWSV 336 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~-~l~~spdg~~Lasg~~D---g~v~vW~~ 336 (927)
+....+.. ..+... .+..+.|+++++..+.. +.+.+++.
T Consensus 212 ~d~lv~~e--------~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 212 QDELVYEE--------KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred HCeEEEee--------CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 22233333 122233 33334588876655443 46777774
No 456
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=40.20 E-value=9.7e+02 Score=31.22 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=36.1
Q ss_pred EEEEcCCCcEEEEEec------------CCeEEEEeccCCCcc-------eEEEeeecCCCCCCCCCCeeEEEECCCCCE
Q 002405 261 CASIAPEQQILAVGTR------------RGVVELYDLAESASL-------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~------------Dg~V~vwd~~~~~~~-------~~~l~~~~~~~~~~h~~~V~~l~~spdg~~ 321 (927)
+++++++|.+.++-+. ||+|.+..-.. ..| -.++++.+...+.+|-....++|.||||..
T Consensus 597 ~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~-S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 597 DIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAK-SPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred ceeecCCceEEEEeccchhhhheEEeccCceEEEecCCC-CCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence 7888898877666543 44444432211 111 112222222223356677899999999997
Q ss_pred EEEEE
Q 002405 322 FAVGW 326 (927)
Q Consensus 322 Lasg~ 326 (927)
.++-.
T Consensus 676 ~IAD~ 680 (1899)
T KOG4659|consen 676 IIADS 680 (1899)
T ss_pred EEecC
Confidence 76543
No 457
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=39.89 E-value=3.1e+02 Score=33.18 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=25.7
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 69 ~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
.+++.+||.|-+.+++.+++..|.+++--++
T Consensus 114 GIvaa~wS~DE~~~cvvt~~r~il~~~k~fd 144 (1243)
T COG5290 114 GIVAASWSADEKTWCVVTSTREILLFDKYFD 144 (1243)
T ss_pred ceEEEeeccCCceEEEEEcCceEEEEecccc
Confidence 4578999999999999999999988875443
No 458
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=39.27 E-value=8.5e+02 Score=30.27 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=42.5
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeee---cCCCCCC-CCCCeeEEEECC--CCCEEEEEEc----------CCcE
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLY---DWGYSMD-DTGPVSCIAWTP--DNSAFAVGWK----------SRGL 331 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~---~~~~~~~-h~~~V~~l~~sp--dg~~Lasg~~----------Dg~v 331 (927)
+..+..++.|+.+.-.|.++ ++....+... ++....+ ....-..+.-+| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~T-Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADT-GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCC-CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44777888899888888877 6555433210 0000000 000001122233 2334555532 5889
Q ss_pred EEEEccCCeeEEEec
Q 002405 332 TVWSVSGCRLMSTIR 346 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~ 346 (927)
+-+|+.+|++...+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999998887664
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.03 E-value=77 Score=22.10 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=22.4
Q ss_pred CCCCEEEEEE-cCCcEEEEEccCCeeEEEec
Q 002405 317 PDNSAFAVGW-KSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 317 pdg~~Lasg~-~Dg~v~vW~~~~~~~~~~l~ 346 (927)
|||+.|.++. .++.|.++|..++....++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 6788666655 57899999998877666554
No 460
>PHA03098 kelch-like protein; Provisional
Probab=37.87 E-value=5.4e+02 Score=30.30 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=36.1
Q ss_pred ccCCCEEEEEeCCc--------eE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 461 SKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 461 spdG~~la~ag~dg--------~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
.-+|+..+.||.++ .+ .||..+++|.......... .........+...++|+.........+..|+.
T Consensus 435 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 435 YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 34677778887532 26 8999999999876433222 11222233344455554432222345556654
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=37.49 E-value=1.3e+02 Score=20.81 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=20.2
Q ss_pred CCCcEEEE-EecCCeEEEEeccCCCcceEEEee
Q 002405 266 PEQQILAV-GTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 266 p~~~~la~-g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
|+++.|.+ ...+++|.++|..+ +..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 56665444 45678999999876 555555544
No 462
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.16 E-value=5e+02 Score=33.36 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCCCCEEEEEEcCCcEEEEEccCCee
Q 002405 316 TPDNSAFAVGWKSRGLTVWSVSGCRL 341 (927)
Q Consensus 316 spdg~~Lasg~~Dg~v~vW~~~~~~~ 341 (927)
+++|..++++..||.+..||+..+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999988765
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=36.73 E-value=5.2e+02 Score=29.77 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC
Q 002405 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (927)
Q Consensus 256 h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg 319 (927)
-..+..++|.||+++|++--..|.|++++-.. +.... .....--......+....|+++||-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~-~~~~~-~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPET-GEVKV-VFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC-Cceee-eecCCceeccCCCCceeeEEECCCc
Confidence 34566899999999888765579999987543 22111 1110000001125778999999984
No 464
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=34.75 E-value=2e+02 Score=32.88 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=66.8
Q ss_pred CchHHHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHhcchhHHHHhhhcccccccchHHhHhccCChH
Q 002405 789 HFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRST 868 (927)
Q Consensus 789 ~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~l~ivv~c~RK~e~~~W~~lF~~~g~P~ 868 (927)
.|..-+.-||.-.+=+-.. .+| ++...+..||++.|.+. ....+=..++
T Consensus 156 ~y~~L~~~Ll~p~lWe~~g---------niP------alvrLL~a~i~k~~~~i---------~~~~~l~~iL------- 204 (435)
T PF03378_consen 156 AYKQLFPPLLSPALWERRG---------NIP------ALVRLLQAYIKKDPSFI---------VANNQLEPIL------- 204 (435)
T ss_dssp TTGGGHHHHTSGGGGGSTT---------THH------HHHHHHHHHHHHHGGG-------------S-CHHHH-------
T ss_pred HHHHHHHHHcCcchhccCC---------CcC------cHHHHHHHHHHhCchhh---------cchhhHHHHH-------
Confidence 6777777777665543221 355 67777777777776654 1112222333
Q ss_pred HHHHHHHhcCcHHHHhhHHh--hhhhccCcc---hhHHHHHHHHHHHHhhccHhhHHHhHhhc
Q 002405 869 ELFEECFQRRWYRTAACYIL--VIAKLEGPA---VSQYSALRLLQATLDECLYELAGELVSVL 926 (927)
Q Consensus 869 ~lf~~cl~~~~l~~a~~yL~--v~~~~~~~~---~~~~~~~~ll~~al~~~~~~l~~el~rfl 926 (927)
..|++||..+..+.-|=+|+ |+.++..+. .-.+.+.-|+++.-.++-....+.+++|+
T Consensus 205 gvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~ 267 (435)
T PF03378_consen 205 GVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFL 267 (435)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 34999999998888887775 566666533 35677788888877777778888888885
No 465
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.59 E-value=64 Score=23.70 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=18.3
Q ss_pred ccCCCEEEEEeCCce------E-EEEccCCcEEee
Q 002405 461 SKDGMFLAVAGLHGL------I-LYDIRQKKWRVF 488 (927)
Q Consensus 461 spdG~~la~ag~dg~------i-~wd~~s~~w~~f 488 (927)
.++++.++.||.+.. + +||+.+++|...
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 356788888887652 4 889999999765
No 466
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=31.72 E-value=1.4e+02 Score=23.20 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=40.5
Q ss_pred HHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhHh
Q 002405 872 EECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVS 924 (927)
Q Consensus 872 ~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~r 924 (927)
...++.|+++.|..++--+....+. ..+....|.......++|+-|.+..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567889999999998877766654 46778889999999999999988765
No 467
>PF13964 Kelch_6: Kelch motif
Probab=31.56 E-value=60 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=23.4
Q ss_pred EccCCCEEEEEeCCc------eE-EEEccCCcEEeeCC
Q 002405 460 ASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGD 490 (927)
Q Consensus 460 ~spdG~~la~ag~dg------~i-~wd~~s~~w~~f~~ 490 (927)
..-+|+..+.||.++ .+ +||..+++|+....
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 344778888888766 34 89999999987654
No 468
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=31.03 E-value=84 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=23.5
Q ss_pred EEccCCCEEEEEeCCc------eE-EEEccCCcEEeeC
Q 002405 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFG 489 (927)
Q Consensus 459 a~spdG~~la~ag~dg------~i-~wd~~s~~w~~f~ 489 (927)
+..-+++..++||.++ .+ .||..+++|+...
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 3344788888888876 45 8999999998653
No 469
>PHA02713 hypothetical protein; Provisional
Probab=30.56 E-value=9.8e+02 Score=28.43 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=32.9
Q ss_pred ccCCCEEEEEeCCc------eE-EEEccC-CcEEeeCCccceeeeEEEEEEe-eCCEEEEEEee
Q 002405 461 SKDGMFLAVAGLHG------LI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYI 515 (927)
Q Consensus 461 spdG~~la~ag~dg------~i-~wd~~s-~~w~~f~~~~~e~~~~v~~~~W-~~~~li~~~~~ 515 (927)
.-+|+..++||.++ .+ .||..+ ++|.......... ...+++- .+.+.++|++.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~~~~iyv~Gg~~ 522 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILHDNTIMMLHCYE 522 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEECCEEEEEeeec
Confidence 34688888888652 35 899999 7999776543322 2334444 44555666553
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.41 E-value=7.1 Score=43.60 Aligned_cols=72 Identities=26% Similarity=0.378 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcCCcEEEEE
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~Dg~v~vW~ 335 (927)
..++...|-|.+.-+|+++.+..+..||-. ++....+. .++....++|.-+|..+++. -..+.+.+|+
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhh--cceecccC---------CchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 345577888988889999999999999954 33322222 46777889999988866654 4458999999
Q ss_pred ccCC
Q 002405 336 VSGC 339 (927)
Q Consensus 336 ~~~~ 339 (927)
+.+.
T Consensus 104 ~n~e 107 (615)
T KOG2247|consen 104 VNSE 107 (615)
T ss_pred hhhh
Confidence 9653
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.89 E-value=5.9e+02 Score=32.73 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=32.2
Q ss_pred ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEee
Q 002405 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (927)
Q Consensus 447 ~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f 488 (927)
.+..+.+.+.....+++|..++++-.||.. .||..+++-+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~ 271 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQIA 271 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceeec
Confidence 344555655555559999999999999999 999999865433
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.55 E-value=4.6e+02 Score=33.84 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=37.6
Q ss_pred ccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHh
Q 002405 854 GRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYE 917 (927)
Q Consensus 854 ~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~ 917 (927)
+.-=..||...-.|-+|.|-||+- +=.-+|.++...+..|-+|++.++++.--.
T Consensus 1113 l~~~t~Lyn~fAdPf~l~Ei~L~I----------~~~a~y~D~~~I~~~W~~li~s~~~~~~~~ 1166 (1311)
T KOG1900|consen 1113 LLSLTQLYNEFADPFDLWEICLSI----------FKCADYSDPSLIQETWARLIDSALSQPGIT 1166 (1311)
T ss_pred cccHHHHHHhccCcchHHHHHHHH----------hhhccCCChHHHHHHHHHHHHHHHhcCCCc
Confidence 333456777777888888877763 112256677778899999999999885443
No 473
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=29.12 E-value=3.1e+02 Score=33.46 Aligned_cols=99 Identities=7% Similarity=-0.001 Sum_probs=56.7
Q ss_pred EeCCcEEEEeee-cCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 227 YSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 227 s~dG~~~~~~~~-d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
..||...+.+.. +++ |+.........-..++ ..++..| +.-|+.||.|.++...+ ......+..++
T Consensus 598 l~dgt~a~y~rap~gS---wd~ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt-~~~~~~leahq----- 665 (925)
T KOG3522|consen 598 LIDGTLAVYGRAPSGS---WDGEPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTT-FIRSWDLEAHQ----- 665 (925)
T ss_pred ccCCccccccCCCCCC---CCCCCccccccCCccccchhhhhc---eeeeecCCceEEEechh-ccccchhHHHH-----
Confidence 456665544332 333 7765322211123344 5555544 45568899999999876 32222222211
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
.|.-.|+++..+-.|-+++-++.| .++.++..+
T Consensus 666 ee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 666 EEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred hhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 156789999999888777776664 566665443
No 474
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=28.99 E-value=47 Score=28.09 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.2
Q ss_pred EEEEccCCCEEEEEeCCceEEEEccCCcEEee
Q 002405 457 HVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (927)
Q Consensus 457 ~va~spdG~~la~ag~dg~i~wd~~s~~w~~f 488 (927)
++..+-.|+-+|+||.+|-.+|-+.+++-+.+
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~~ 33 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVKSL 33 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHhhc
Confidence 46778899999999999878899988875433
No 475
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=28.47 E-value=7.1e+02 Score=30.72 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=74.1
Q ss_pred ceecHHHHHHHHHHccCHHHHHHHHHHcCCC-CCchHHHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHH
Q 002405 757 AQTILHCLLRHLLQRDKIEEALRLAQLSAEK-PHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFI 835 (927)
Q Consensus 757 ~~~~L~~~l~~ll~~~~~~~a~~~~~~~~~l-~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~l 835 (927)
..-..--|++.||..|+..-|.++....... --+.-+-+++|....|--..+++.++. . .-++++.+-|
T Consensus 431 ~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~~~~~~~lvl~~~~e~fd~Asn~n~~---~-------g~lk~A~~~L 500 (715)
T PF08314_consen 431 KDEIEEIFLEALLSSGRFSLAKSLYEESSSSPLSSEKVEDLVLKAAWEFFDNASNGNRT---R-------GGLKKARECL 500 (715)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT---TT-HHHHHHHHHHHHHHHHH-SS--TT---S-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhcCCCCCCC---C-------hHHHHHHHHH
Confidence 3445566788899999988888776665543 224557777777765522222211111 1 2222222222
Q ss_pred Hhcchh---------HHHHhhhccccc---c------cchHHhHhccCChHHHHHHHHhcCc-HHHH-------hhHHhh
Q 002405 836 RNFPEY---------LNVVVSVARKTD---G------RHWADLFSAAGRSTELFEECFQRRW-YRTA-------ACYILV 889 (927)
Q Consensus 836 ~~~~~~---------l~ivv~c~RK~e---~------~~W~~lF~~~g~P~~lf~~cl~~~~-l~~a-------~~yL~v 889 (927)
+-||.- ++..+..+..+. + ..=|.=+..-.+|-+|.++||+.|. .-++ +..|.+
T Consensus 501 ~l~~~~~~~~~~~~~~~~Li~a~~~Ls~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~ 580 (715)
T PF08314_consen 501 NLFPPTFPNSPRIQREKDLIKATHALSEFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVL 580 (715)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTTS-----------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHH
T ss_pred HhccCcCCccHHHHHHHHHHHHHHHHHhCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHH
Confidence 211110 111122222111 0 1112222333489999999999764 2222 233333
Q ss_pred hhhc-----cCcchhHHHHHHHHHHHHhhccHhhHHHhH
Q 002405 890 IAKL-----EGPAVSQYSALRLLQATLDECLYELAGELV 923 (927)
Q Consensus 890 ~~~~-----~~~~~~~~~~~~ll~~al~~~~~~l~~el~ 923 (927)
.... +....-++....++++||..+||+.|.+.|
T Consensus 581 ~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~ 619 (715)
T PF08314_consen 581 AGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYC 619 (715)
T ss_dssp H-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3111 112233445566789999999999998876
No 476
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.37 E-value=1.9e+02 Score=34.93 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=85.7
Q ss_pred eecHHHHHHHHHHccCHHH--HHHH-HHHcC----CCCCchHHHHHHHHHh--hhcccccccccccccCCcccccchhhH
Q 002405 758 QTILHCLLRHLLQRDKIEE--ALRL-AQLSA----EKPHFSHCLEWLLFTV--FDAEISRQNINKNQISIPKRAASFSLL 828 (927)
Q Consensus 758 ~~~L~~~l~~ll~~~~~~~--a~~~-~~~~~----~l~~f~~~LE~lL~~v--l~~e~~~~~~~~~~~~~~~~~~~~~~l 828 (927)
+.|++....-|..+..|.- .+.+ .+.|+ .+.||.-+.+=|.+.. |.+..-+ |..+-..|+| +-|
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ys--peydv~gi~d-----PFL 250 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYS--PEYDVHGISD-----PFL 250 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccCccCCCc-----hHH
Confidence 4555555444444444432 2222 23333 4678887766665542 1111111 2222224555 555
Q ss_pred H-HHHHHHH--------hcchhHHHHhhhcccccccchHHhHhccCChHHHHH-----HHH--hcCcHHHHhhHH-----
Q 002405 829 E-KTCNFIR--------NFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFE-----ECF--QRRWYRTAACYI----- 887 (927)
Q Consensus 829 ~-~v~~~l~--------~~~~~l~ivv~c~RK~e~~~W~~lF~~~g~P~~lf~-----~cl--~~~~l~~a~~yL----- 887 (927)
+ +++++|+ ..+-+-+|..+.|||||.. ..+|+. -||| .|| +.+-...|++.|
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss------kN~GnA-ILYE~V~TI~~I~~~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLMNDILAQVATNTDSS------KNAGNA-ILYECVRTIMDIRSNSGLRVLAINILGKFLL 323 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc------ccchhH-HHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Confidence 5 4555543 2345799999999999987 344432 2232 122 233355555555
Q ss_pred ------------------------------hhhhhccCcch-hHHHHHHHHHHHHhhccHh-hHHHhHhhc
Q 002405 888 ------------------------------LVIAKLEGPAV-SQYSALRLLQATLDECLYE-LAGELVSVL 926 (927)
Q Consensus 888 ------------------------------~v~~~~~~~~~-~~~~~~~ll~~al~~~~~~-l~~el~rfl 926 (927)
-|++=++..|+ -+..|++|.-+..++.+.. +.+||+.||
T Consensus 324 n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL 394 (866)
T KOG1062|consen 324 NRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFL 394 (866)
T ss_pred CCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 12223444444 4567899999999888875 889999987
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=28.32 E-value=1.2e+02 Score=34.61 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
...++|+|+.-|.||+||--. -+....+.+ -...|..+..+.+|+++.+.+. ..+-+-|+..
T Consensus 572 esGyIa~as~kGDirLyDRig-~rAKtalP~--------lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPG--------LGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chhhhcCcc--------cccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 356899999999999999643 222222333 4567889999999998877766 5777777743
No 478
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=28.01 E-value=1.5e+02 Score=28.65 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=28.1
Q ss_pred eEEEEEccCCCEEEEEeCCceE--EEEccCCcEEeeCCccceeeeEEEEEEe
Q 002405 455 VQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (927)
Q Consensus 455 I~~va~spdG~~la~ag~dg~i--~wd~~s~~w~~f~~~~~e~~~~v~~~~W 504 (927)
+.=+.|+|+|.+.|++...|.. -.|+..+.|.-+.....+. +.+..+.|
T Consensus 105 ~e~~~f~p~~~~~~~~~esG~~f~~vdL~e~eW~dYDek~~~~-V~I~~~~~ 155 (161)
T PF05907_consen 105 LEPVEFSPRGGWVAVSVESGTKFEDVDLSEGEWYDYDEKAGEE-VSITEFEW 155 (161)
T ss_dssp EEEEEE---S-EEEEET-TS-EEEEE--TTS-EEEEETTTTEE-EEEEEEEE
T ss_pred cEeEEEecCCcEEEEEecCCCEEEeccCCCCceeeeccCCCce-EEEEEEEE
Confidence 3447899999999999878877 5788888998886554433 55555555
No 479
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=27.34 E-value=5e+02 Score=23.94 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHHHHHH-hcchh--HHHHhhhcccccc-cchHHhHhccCChHHHHHHHHhc-CcHHHHhhHHhhhhhccCcchhHHHHH
Q 002405 830 KTCNFIR-NFPEY--LNVVVSVARKTDG-RHWADLFSAAGRSTELFEECFQR-RWYRTAACYILVIAKLEGPAVSQYSAL 904 (927)
Q Consensus 830 ~v~~~l~-~~~~~--l~ivv~c~RK~e~-~~W~~lF~~~g~P~~lf~~cl~~-~~l~~a~~yL~v~~~~~~~~~~~~~~~ 904 (927)
++.+|++ ..+.| -.+.--| ++.+. ...-+|....|.-++-++.+++. ++.+.|..|..- ....+.|.
T Consensus 58 ~ll~~l~~~~~~yd~~~~~~~c-~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~ 129 (140)
T smart00299 58 KEIERLDNKSNHYDIEKVGKLC-EKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWA 129 (140)
T ss_pred HHHHHHHhccccCCHHHHHHHH-HHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHH
Confidence 3455666 33333 3333444 33222 23345666777778888888887 888888888772 22456788
Q ss_pred HHHHHHHhh
Q 002405 905 RLLQATLDE 913 (927)
Q Consensus 905 ~ll~~al~~ 913 (927)
++++..++.
T Consensus 130 ~~~~~~l~~ 138 (140)
T smart00299 130 EVLKALLDK 138 (140)
T ss_pred HHHHHHHcc
Confidence 888777764
No 480
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.02 E-value=1.7e+02 Score=18.75 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=11.7
Q ss_pred EEEEcCCCcEEEEEecCCeEEE
Q 002405 261 CASIAPEQQILAVGTRRGVVEL 282 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~v 282 (927)
.++++++|+++++=+.+..|++
T Consensus 6 gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEE
Confidence 4555555555555555555544
No 481
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=26.28 E-value=1.6e+03 Score=29.46 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=18.3
Q ss_pred cEEEEcCCccEEEEEecCcEE-EEEEEEecC
Q 002405 71 LQAVWSPDTKLIAVVTSSLYL-HIFKVQITE 100 (927)
Q Consensus 71 ~~v~wspDg~~Lav~t~dg~l-~i~~l~~~~ 100 (927)
.+++++|+|..-++-|....| ++=.+.++.
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg 626 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDG 626 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCc
Confidence 589999999766665544433 333444333
No 482
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=25.84 E-value=2.2e+02 Score=26.89 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=50.0
Q ss_pred ChHHHHHH---HHhcCcHHHHhhHHhhhhhccC-cchhHHHHHHHHHHHHhhccHhhHHH-hHhhcC
Q 002405 866 RSTELFEE---CFQRRWYRTAACYILVIAKLEG-PAVSQYSALRLLQATLDECLYELAGE-LVSVLT 927 (927)
Q Consensus 866 ~P~~lf~~---cl~~~~l~~a~~yL~v~~~~~~-~~~~~~~~~~ll~~al~~~~~~l~~e-l~rfl~ 927 (927)
+|.+|+++ .|+.|+++.|..+|--|.+--+ ..-+.+--+.|+.+=.++++|+.|.+ +=||||
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 78899975 5779999999999987776555 44577888999999999999998864 456764
No 483
>PHA02790 Kelch-like protein; Provisional
Probab=25.15 E-value=1.1e+03 Score=27.29 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=35.6
Q ss_pred ccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 461 spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
.-+|+..++|| .. .||..+++|.........+ .........+.+.++|++........+..|+.
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 44677777775 45 8999999999776543322 12222334455666665432211234555554
No 484
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=24.56 E-value=3.2e+02 Score=23.30 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=48.6
Q ss_pred ccccchHHhHhccC-ChHHHHHHHHh--cCc-HHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhHh
Q 002405 852 TDGRHWADLFSAAG-RSTELFEECFQ--RRW-YRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVS 924 (927)
Q Consensus 852 ~e~~~W~~lF~~~g-~P~~lf~~cl~--~~~-l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~r 924 (927)
-=-+.|+.|...+| +..++..---+ .+. -+-+...|...++-++...+ ..-.|+++.-+.++-++..+|++
T Consensus 11 ~lG~~Wk~lar~LG~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r~g~~~A--Tv~~L~~aL~~~~r~di~~~l~~ 85 (86)
T cd08777 11 NLGKKWKRCARKLGFTESEIEEIDHDYERDGLKEKVHQMLHKWKMKEGSKGA--TVGKLAQALEGCIKPDLLVSLIQ 85 (86)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHccCCCCc--HHHHHHHHHHHcchhhHHHHHHh
Confidence 33578999999999 77766553322 233 47788899988887763211 24456666666679999999986
No 485
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=24.10 E-value=2.4e+02 Score=29.45 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=53.0
Q ss_pred HHhhhcccccccchHHhHhccCChHHHHHHH---HhcCcHHHHhhHHhhhhhccC-cchhHHHHHHHHHHHHhhccHhhH
Q 002405 844 VVVSVARKTDGRHWADLFSAAGRSTELFEEC---FQRRWYRTAACYILVIAKLEG-PAVSQYSALRLLQATLDECLYELA 919 (927)
Q Consensus 844 ivv~c~RK~e~~~W~~lF~~~g~P~~lf~~c---l~~~~l~~a~~yL~v~~~~~~-~~~~~~~~~~ll~~al~~~~~~l~ 919 (927)
++++|+.+.+. +. -.+|.++|+++ ++.|+++.|..++-=+.+.-+ +....+....|...-...++|+.|
T Consensus 16 ~lsgCs~~~~~-----~~--~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A 88 (243)
T PRK10866 16 FLAGCSGSKEE-----VP--DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLA 88 (243)
T ss_pred HHhhcCCCCcC-----CC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 37789864431 11 12888888755 558999999999877777655 444555567888999999999999
Q ss_pred HHhH
Q 002405 920 GELV 923 (927)
Q Consensus 920 ~el~ 923 (927)
.+..
T Consensus 89 ~~~~ 92 (243)
T PRK10866 89 QAAI 92 (243)
T ss_pred HHHH
Confidence 8776
No 486
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.58 E-value=5.5e+02 Score=24.85 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=65.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHcCCCCCchHHHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHh-cchh
Q 002405 763 CLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN-FPEY 841 (927)
Q Consensus 763 ~~l~~ll~~~~~~~a~~~~~~~~~l~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~-~~~~ 841 (927)
+.++++-.+|+...|++.+..+.+..=+.=+|-.|.+.-=.+- +.- +.-..+||.+..+|+. |..|
T Consensus 19 ~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~------------~tL-d~c~~lLP~i~~LL~Sk~E~~ 85 (164)
T PF13925_consen 19 QVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEK------------WTL-DLCVDLLPLIEELLQSKYESY 85 (164)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCc------------ccH-HHHHHHHHHHHHHHhCCcHHH
Confidence 4556777889999999998888887766666666653211100 110 0111789999888864 7889
Q ss_pred HHHHhhhcccccccchHHhHhccCC
Q 002405 842 LNVVVSVARKTDGRHWADLFSAAGR 866 (927)
Q Consensus 842 l~ivv~c~RK~e~~~W~~lF~~~g~ 866 (927)
..+-.+++|++=-+.|+.+-+.+..
T Consensus 86 i~~aL~~L~~i~~~f~~~I~~~~~~ 110 (164)
T PF13925_consen 86 ISVALEMLRSILKKFGPVIRSNLSA 110 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999877663
No 487
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=23.19 E-value=1.2e+02 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=23.2
Q ss_pred EEEccCCCEEEEEeC---C-----ceE-EEEccCCcEEee
Q 002405 458 VAASKDGMFLAVAGL---H-----GLI-LYDIRQKKWRVF 488 (927)
Q Consensus 458 va~spdG~~la~ag~---d-----g~i-~wd~~s~~w~~f 488 (927)
.+..++++.++.||. + ..+ +||..+..|+..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 455679999999988 1 234 789999999754
No 488
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=22.99 E-value=1.2e+03 Score=26.68 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=59.5
Q ss_pred eEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeCC-ccceeeeEEEEE--EeeCC---EEEEEEeecCCCeEEEEEeeC
Q 002405 455 VQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD-ITQEQKIQSKGL--LWLGK---IIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 455 I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~~-~~~e~~~~v~~~--~W~~~---~li~~~~~~~~~~~~l~l~~~ 528 (927)
|..+.++..-..+++-|++.....+-+ |.-+.-.. +.....+..-.. .|.++ .++++ ..+..+.+|.-
T Consensus 244 i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~-----t~t~~LlVy~d 317 (418)
T PF14727_consen 244 IQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVG-----THTGTLLVYED 317 (418)
T ss_pred EEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEE-----ecCCeEEEEeC
Confidence 344455555566777777776655543 33321111 111111222233 33333 24544 23467888865
Q ss_pred CCCCccceeEEEecCCccEEEEcc-----CCEEEEEEcCCeEEEEEE
Q 002405 529 YHLDQSSLLCRKSLLAKPIVMDVY-----EDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 529 ~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~v~~~d~~i~l~~~ 570 (927)
..+.|.-.++..|+.+... .+.+++.+.+|.+.+--+
T Consensus 318 -----~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 318 -----TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred -----CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEe
Confidence 3678888888888877643 556888888999988554
No 489
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.77 E-value=3.2e+02 Score=21.11 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=23.9
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeE
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V 280 (927)
+++.|||++++.+..... .+..+..-+.++|||.+=.+=+.+|.+
T Consensus 6 ~~~q~DGkIlv~G~~~~~------------~~~~~~~l~Rln~DGsLDttFg~~G~v 50 (55)
T TIGR02608 6 VAVQSDGKILVAGYVDNS------------SGNNDFVLARLNADGSLDTTFGTGGKV 50 (55)
T ss_pred EEECCCCcEEEEEEeecC------------CCcccEEEEEECCCCCccCCcCCCcEE
Confidence 456788888887764321 011222356677776654333444444
No 490
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=22.67 E-value=1.3e+03 Score=27.19 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=40.4
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC---CCCEEEEEE------cCCcEEEEEccCC
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGW------KSRGLTVWSVSGC 339 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---dg~~Lasg~------~Dg~v~vW~~~~~ 339 (927)
..+.+++.|+.+.-.|..+ ++.+-...... +... ..+.-+| +|. ++++. .+|.|..+|..+|
T Consensus 121 ~~v~v~t~dg~l~ALDa~T-Gk~~W~~~~~~------~~~~-~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKT-GKVVWSKKNGD------YKAG-YTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred CEEEEEcCCCEEEEEECCC-CCEEeeccccc------cccc-ccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCC
Confidence 4566778899999999887 65544333211 1100 0111223 454 44443 2688999999998
Q ss_pred eeEEEec
Q 002405 340 RLMSTIR 346 (927)
Q Consensus 340 ~~~~~l~ 346 (927)
+.+.+..
T Consensus 192 ~~lW~~~ 198 (527)
T TIGR03075 192 KLVWRRY 198 (527)
T ss_pred ceeEecc
Confidence 8776654
No 491
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=22.30 E-value=6.3e+02 Score=26.36 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=45.0
Q ss_pred EEEEcCCCcEEEEEecCC-eEEEEeccCCCcceEEEeeecC--CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 261 CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg-~V~vwd~~~~~~~~~~l~~~~~--~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
++..=|||+.|++|+.+. +...|.-.........+..... ......-.| -+-..|||+.++.+..+ -.|||..
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~~~llPdG~lFi~an~~--s~i~d~~ 197 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--FVHLLPDGNLFIFANRG--SIIYDYK 197 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCc--eEEEcCCCCEEEEEcCC--cEEEeCC
Confidence 566678999999988774 4455553221111111111000 000001112 35567999999888763 4577988
Q ss_pred CCeeEEEecc
Q 002405 338 GCRLMSTIRQ 347 (927)
Q Consensus 338 ~~~~~~~l~~ 347 (927)
++..+..+..
T Consensus 198 ~n~v~~~lP~ 207 (243)
T PF07250_consen 198 TNTVVRTLPD 207 (243)
T ss_pred CCeEEeeCCC
Confidence 8766666543
No 492
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.58 E-value=1.6e+03 Score=27.98 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=39.0
Q ss_pred EEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
+..+.........+.++.+|+.+.....+-...-+.. .+... ..-.+.+ ++..-.+...++..+..|.++...++.
T Consensus 641 lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 641 LISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-RGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred EEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-CCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHH
Confidence 4444333344557778889988776553311111110 11000 1122334 333333455678889999988887654
No 493
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=20.98 E-value=1.6e+02 Score=27.45 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=44.2
Q ss_pred ccccchHHhHhccC-ChHHHHHHHHhcCc---HHHHhhHHhhhhhc--cCcchhHHHHHHHHHHH
Q 002405 852 TDGRHWADLFSAAG-RSTELFEECFQRRW---YRTAACYILVIAKL--EGPAVSQYSALRLLQAT 910 (927)
Q Consensus 852 ~e~~~W~~lF~~~g-~P~~lf~~cl~~~~---l~~a~~yL~v~~~~--~~~~~~~~~~~~ll~~a 910 (927)
++.-+=..+-+-.| ..-..|-+-|++++ +..||-.|+|+|.+ ++++..-+.|-++|..|
T Consensus 37 I~Pv~iESMl~qMGk~~~~~Firyl~~~~e~hl~nAA~vllIyQ~~Ivd~sd~Nl~~W~~~L~ka 101 (148)
T PF06711_consen 37 IKPVYIESMLDQMGKRAGQEFIRYLSRGNEEHLQNAAQVLLIYQTFIVDGSDENLQRWRRILQKA 101 (148)
T ss_pred CCceeHHHHHHHHhHhHHHHHHHHHcCCCHHHHHhhhhhhheeeeeeecCCHHHHHHHHHHHHHc
Confidence 33333444556667 66788888998876 88999999999986 46777788888888766
No 494
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=20.90 E-value=7.3e+02 Score=27.62 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=47.9
Q ss_pred ccccccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhH
Q 002405 850 RKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELV 923 (927)
Q Consensus 850 RK~e~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~ 923 (927)
|---...|-.||.+ ++.+.++|..+||..|-.++..+++..+--..-.-|=-.||..++|++--+++
T Consensus 96 ~~eNR~fflal~r~-------i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 96 RPENRQFFLALFRY-------IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred cccchHHHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence 33345567777777 88899999999999999999999997432222233334677888887665554
Done!