Query 002405
Match_columns 927
No_of_seqs 551 out of 3687
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 01:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 4.9E-40 1.7E-44 394.8 44.9 462 20-571 19-566 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.9E-38 1E-42 376.6 50.0 482 21-569 18-577 (577)
3 1nr0_A Actin interacting prote 100.0 1.8E-37 6E-42 372.6 46.1 440 21-570 61-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.9E-35 1E-39 350.6 43.5 445 21-527 59-577 (577)
5 3mkq_A Coatomer beta'-subunit; 100.0 3.6E-34 1.2E-38 355.9 53.3 651 21-924 15-705 (814)
6 1pgu_A Actin interacting prote 100.0 9.4E-34 3.2E-38 339.8 50.6 459 20-571 19-613 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 7.3E-35 2.5E-39 379.3 40.6 500 21-570 617-1247(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 5.1E-33 1.7E-37 346.7 35.1 484 21-570 19-781 (902)
9 4g56_B MGC81050 protein; prote 100.0 8E-32 2.7E-36 300.8 26.5 318 25-482 11-343 (357)
10 3ow8_A WD repeat-containing pr 100.0 4E-31 1.4E-35 290.6 31.0 274 129-480 29-319 (321)
11 4gqb_B Methylosome protein 50; 100.0 2.4E-31 8.2E-36 295.0 27.3 224 226-483 90-332 (344)
12 1vyh_C Platelet-activating fac 100.0 1.7E-30 5.7E-35 296.0 33.8 276 129-480 105-409 (410)
13 1got_B GT-beta; complex (GTP-b 100.0 2.1E-30 7.3E-35 287.3 33.0 279 66-479 54-340 (340)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-30 1.4E-34 285.6 33.3 303 69-484 18-337 (345)
15 1vyh_C Platelet-activating fac 100.0 1.4E-30 4.7E-35 296.7 27.2 237 204-484 104-371 (410)
16 2pbi_B Guanine nucleotide-bind 100.0 5.9E-30 2E-34 285.4 31.5 284 66-479 63-354 (354)
17 3iz6_a 40S ribosomal protein R 100.0 1.9E-30 6.4E-35 292.4 26.5 300 66-484 65-377 (380)
18 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-29 1.1E-33 326.0 42.0 424 66-571 614-1115(1249)
19 2ynn_A Coatomer subunit beta'; 100.0 9.8E-30 3.4E-34 277.2 30.4 277 130-482 11-302 (304)
20 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-29 1.3E-33 311.6 39.6 222 66-361 16-282 (902)
21 3frx_A Guanine nucleotide-bind 100.0 6.1E-29 2.1E-33 272.9 36.2 288 66-483 16-318 (319)
22 3ow8_A WD repeat-containing pr 100.0 2.6E-29 8.9E-34 276.1 31.5 275 205-528 29-319 (321)
23 1pgu_A Actin interacting prote 100.0 6.6E-29 2.2E-33 297.6 37.9 415 66-571 17-571 (615)
24 2hes_X YDR267CP; beta-propelle 100.0 3.3E-29 1.1E-33 276.4 31.8 284 129-482 11-328 (330)
25 1r5m_A SIR4-interacting protei 100.0 6.3E-29 2.2E-33 282.7 34.8 340 66-481 44-424 (425)
26 3vl1_A 26S proteasome regulato 100.0 1.1E-29 3.7E-34 289.6 26.2 329 70-482 59-419 (420)
27 4gqb_B Methylosome protein 50; 100.0 5E-29 1.7E-33 276.3 29.7 276 22-383 33-332 (344)
28 2pm9_A Protein WEB1, protein t 100.0 6.9E-30 2.4E-34 290.5 22.4 345 67-483 12-415 (416)
29 2ynn_A Coatomer subunit beta'; 100.0 5.8E-29 2E-33 271.1 28.7 239 205-486 10-263 (304)
30 1erj_A Transcriptional repress 100.0 2.6E-28 8.8E-33 276.3 34.2 223 225-482 130-389 (393)
31 4ery_A WD repeat-containing pr 100.0 8.7E-28 3E-32 262.5 33.4 274 129-481 20-311 (312)
32 4aow_A Guanine nucleotide-bind 100.0 1.4E-27 4.8E-32 263.3 34.6 290 66-484 37-339 (340)
33 1got_B GT-beta; complex (GTP-b 100.0 7.8E-28 2.7E-32 266.6 32.5 273 253-569 51-340 (340)
34 1gxr_A ESG1, transducin-like e 100.0 3.3E-28 1.1E-32 267.7 28.5 312 67-480 9-335 (337)
35 2hes_X YDR267CP; beta-propelle 100.0 7.8E-28 2.7E-32 265.4 30.7 282 205-529 11-327 (330)
36 1erj_A Transcriptional repress 100.0 7.2E-28 2.5E-32 272.6 30.6 284 21-421 66-389 (393)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-27 4.7E-32 265.2 32.1 283 224-529 22-334 (345)
38 4g56_B MGC81050 protein; prote 100.0 3.3E-28 1.1E-32 271.5 26.9 275 22-380 45-341 (357)
39 4h5i_A Guanine nucleotide-exch 100.0 2.5E-28 8.5E-33 273.4 26.0 193 255-482 131-343 (365)
40 3frx_A Guanine nucleotide-bind 100.0 5.6E-27 1.9E-31 257.2 34.8 287 203-571 12-316 (319)
41 3gre_A Serine/threonine-protei 100.0 1.3E-28 4.6E-33 282.5 22.6 369 22-479 30-437 (437)
42 2xzm_R RACK1; ribosome, transl 100.0 2.6E-27 8.7E-32 262.8 30.7 295 128-483 17-341 (343)
43 2pbi_B Guanine nucleotide-bind 100.0 1.8E-27 6E-32 265.3 29.4 274 253-569 60-354 (354)
44 3iz6_a 40S ribosomal protein R 100.0 1E-27 3.5E-32 270.0 25.9 279 253-571 62-374 (380)
45 2j04_B YDR362CP, TAU91; beta p 100.0 4.3E-28 1.5E-32 283.0 23.3 323 67-482 133-517 (524)
46 2xzm_R RACK1; ribosome, transl 100.0 1.5E-26 5.3E-31 256.5 34.4 296 204-571 17-339 (343)
47 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-27 5.1E-32 271.3 24.1 237 208-472 85-350 (588)
48 2pm9_A Protein WEB1, protein t 100.0 6.8E-28 2.3E-32 274.0 21.3 327 22-421 15-414 (416)
49 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-26 4.4E-31 266.8 31.2 303 74-482 124-442 (445)
50 4ery_A WD repeat-containing pr 100.0 1.8E-26 6.2E-31 252.0 30.8 275 254-570 20-310 (312)
51 2pm7_B Protein transport prote 100.0 1.1E-26 3.8E-31 252.1 28.8 250 205-489 6-293 (297)
52 3vl1_A 26S proteasome regulato 100.0 6.5E-27 2.2E-31 266.5 27.4 306 224-571 62-418 (420)
53 1r5m_A SIR4-interacting protei 100.0 2.1E-26 7.2E-31 261.8 31.5 328 21-420 47-424 (425)
54 1gxr_A ESG1, transducin-like e 100.0 4E-26 1.4E-30 250.9 32.5 305 222-571 13-336 (337)
55 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-26 6.4E-31 257.7 30.3 315 66-483 7-362 (372)
56 3bg1_A Protein SEC13 homolog; 100.0 4.1E-27 1.4E-31 257.9 24.3 250 204-489 9-301 (316)
57 3dm0_A Maltose-binding peripla 100.0 2.1E-26 7.1E-31 280.7 33.1 297 66-481 381-692 (694)
58 4e54_B DNA damage-binding prot 100.0 4.4E-27 1.5E-31 270.0 24.1 302 68-485 120-433 (435)
59 2j04_B YDR362CP, TAU91; beta p 99.9 1.8E-27 6.2E-32 277.7 20.0 317 29-420 171-516 (524)
60 3mkq_A Coatomer beta'-subunit; 99.9 1.5E-25 5.1E-30 278.3 36.9 351 130-569 11-420 (814)
61 4aow_A Guanine nucleotide-bind 99.9 1.5E-25 5.3E-30 246.9 30.8 284 2-362 19-318 (340)
62 3v7d_B Cell division control p 99.9 5.6E-25 1.9E-29 254.3 36.6 304 135-527 125-462 (464)
63 3dw8_B Serine/threonine-protei 99.9 1.3E-25 4.5E-30 257.9 29.5 345 21-480 30-444 (447)
64 3k26_A Polycomb protein EED; W 99.9 1.1E-25 3.9E-30 250.4 26.0 283 130-482 16-366 (366)
65 3dwl_C Actin-related protein 2 99.9 3.8E-26 1.3E-30 256.3 22.1 236 223-488 16-287 (377)
66 3i2n_A WD repeat-containing pr 99.9 6.6E-25 2.3E-29 243.4 31.3 305 66-483 17-354 (357)
67 3dm0_A Maltose-binding peripla 99.9 4.8E-25 1.6E-29 268.7 32.3 295 204-571 378-692 (694)
68 3ei3_B DNA damage-binding prot 99.9 3.8E-25 1.3E-29 248.9 28.8 270 130-482 71-382 (383)
69 4aez_A CDC20, WD repeat-contai 99.9 1.2E-24 4.1E-29 246.8 32.4 272 135-484 96-382 (401)
70 4gga_A P55CDC, cell division c 99.9 9.8E-25 3.3E-29 249.1 31.3 272 24-384 110-397 (420)
71 3v7d_B Cell division control p 99.9 1.2E-24 4.3E-29 251.4 31.3 299 74-478 127-458 (464)
72 1sq9_A Antiviral protein SKI8; 99.9 9.2E-25 3.1E-29 246.6 29.5 306 128-484 12-397 (397)
73 1k8k_C P40, ARP2/3 complex 41 99.9 1.1E-24 3.7E-29 243.4 29.6 233 224-488 14-282 (372)
74 3dwl_C Actin-related protein 2 99.9 6.6E-26 2.3E-30 254.3 19.7 237 67-381 11-280 (377)
75 3odt_A Protein DOA1; ubiquitin 99.9 1.9E-24 6.4E-29 235.0 30.2 273 21-385 20-299 (313)
76 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.8E-23 6E-28 240.6 39.3 306 134-529 121-441 (445)
77 3zwl_B Eukaryotic translation 99.9 1.9E-24 6.4E-29 240.7 30.0 288 129-484 29-348 (369)
78 3zwl_B Eukaryotic translation 99.9 3.1E-24 1.1E-28 238.9 30.9 273 66-422 31-347 (369)
79 4a11_B DNA excision repair pro 99.9 1.9E-24 6.5E-29 244.3 29.6 330 38-484 21-367 (408)
80 4e54_B DNA damage-binding prot 99.9 9.4E-25 3.2E-29 250.5 27.0 284 22-385 122-433 (435)
81 2pm7_B Protein transport prote 99.9 8.5E-25 2.9E-29 237.2 25.3 239 254-528 6-283 (297)
82 3i2n_A WD repeat-containing pr 99.9 1.2E-24 4E-29 241.5 26.9 297 21-384 20-355 (357)
83 4ggc_A P55CDC, cell division c 99.9 7.2E-24 2.5E-28 231.1 31.9 271 23-382 29-315 (318)
84 3f3f_A Nucleoporin SEH1; struc 99.9 1.1E-24 3.8E-29 239.8 25.6 265 204-487 7-343 (351)
85 3bg1_A Protein SEC13 homolog; 99.9 6.8E-25 2.3E-29 240.3 23.5 201 254-482 10-247 (316)
86 3k26_A Polycomb protein EED; W 99.9 8.6E-25 2.9E-29 243.3 23.8 290 205-528 15-364 (366)
87 3ei3_B DNA damage-binding prot 99.9 5.2E-24 1.8E-28 239.6 29.9 274 66-420 72-381 (383)
88 4gga_A P55CDC, cell division c 99.9 7.6E-24 2.6E-28 241.8 31.4 234 205-482 144-395 (420)
89 3odt_A Protein DOA1; ubiquitin 99.9 7.5E-24 2.6E-28 230.3 29.5 271 129-486 15-300 (313)
90 3gre_A Serine/threonine-protei 99.9 1.8E-23 6.1E-28 239.7 31.3 264 205-484 60-361 (437)
91 4gq1_A NUP37; propeller, trans 99.9 4E-24 1.4E-28 241.7 25.6 268 137-481 96-388 (393)
92 1p22_A F-BOX/WD-repeat protein 99.9 6.5E-24 2.2E-28 243.5 27.6 273 131-484 132-416 (435)
93 4h5i_A Guanine nucleotide-exch 99.9 9.8E-24 3.3E-28 236.0 27.9 276 222-529 18-342 (365)
94 4aez_A CDC20, WD repeat-contai 99.9 4E-23 1.4E-27 234.2 33.1 273 27-388 99-386 (401)
95 3jrp_A Fusion protein of prote 99.9 1.2E-23 4.1E-28 235.2 26.7 247 204-489 7-295 (379)
96 1sq9_A Antiviral protein SKI8; 99.9 5.1E-23 1.8E-27 232.2 31.5 285 66-422 15-396 (397)
97 4ggc_A P55CDC, cell division c 99.9 8.9E-23 3E-27 222.4 30.2 235 206-482 65-315 (318)
98 3dw8_B Serine/threonine-protei 99.9 1.2E-23 3.9E-28 241.6 22.7 246 206-487 26-378 (447)
99 4a11_B DNA excision repair pro 99.9 3.5E-23 1.2E-27 233.9 25.3 318 239-572 22-365 (408)
100 2aq5_A Coronin-1A; WD40 repeat 99.9 3.4E-23 1.2E-27 234.7 24.6 267 224-528 40-340 (402)
101 2w18_A PALB2, fancn, partner a 99.9 1.2E-22 4E-27 217.5 26.8 206 223-480 116-355 (356)
102 1yfq_A Cell cycle arrest prote 99.9 3.3E-22 1.1E-26 220.5 31.0 272 66-418 10-321 (342)
103 2j04_A TAU60, YPL007P, hypothe 99.9 1.6E-23 5.4E-28 238.4 19.6 254 136-481 21-296 (588)
104 1yfq_A Cell cycle arrest prote 99.9 9.3E-23 3.2E-27 224.9 25.4 277 21-373 13-311 (342)
105 1p22_A F-BOX/WD-repeat protein 99.9 1.1E-22 3.9E-27 233.1 26.2 254 225-529 138-413 (435)
106 3f3f_A Nucleoporin SEH1; struc 99.9 2.4E-22 8.2E-27 221.1 27.6 289 66-424 10-340 (351)
107 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-22 4.1E-27 230.3 25.5 239 205-485 78-345 (402)
108 3vu4_A KMHSV2; beta-propeller 99.9 2.6E-22 8.9E-27 223.5 27.6 292 66-482 18-336 (355)
109 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.4E-21 4.7E-26 225.2 33.6 274 21-362 6-366 (450)
110 3jrp_A Fusion protein of prote 99.9 2.6E-22 8.8E-27 224.3 26.0 240 254-529 8-286 (379)
111 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.7E-22 1.6E-26 229.1 27.1 258 256-528 101-389 (450)
112 3jro_A Fusion protein of prote 99.9 1.2E-22 4.2E-27 249.2 22.9 252 204-490 5-294 (753)
113 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-21 5.4E-26 217.2 29.3 290 21-424 21-339 (355)
114 3mmy_A MRNA export factor; mRN 99.9 1.4E-21 4.9E-26 217.1 28.7 274 204-514 35-335 (368)
115 3mmy_A MRNA export factor; mRN 99.9 3.3E-21 1.1E-25 214.2 29.7 270 21-373 41-334 (368)
116 2xyi_A Probable histone-bindin 99.9 3.6E-21 1.2E-25 220.3 25.1 243 224-485 134-413 (430)
117 3lrv_A PRE-mRNA-splicing facto 99.9 8E-21 2.7E-25 210.3 24.2 229 227-487 45-299 (343)
118 4gq1_A NUP37; propeller, trans 99.9 4.4E-21 1.5E-25 216.7 22.1 255 224-512 95-377 (393)
119 1l0q_A Surface layer protein; 99.9 1.8E-19 6E-24 202.9 34.7 270 32-394 3-287 (391)
120 3lrv_A PRE-mRNA-splicing facto 99.9 4.9E-21 1.7E-25 212.0 19.0 189 254-479 122-330 (343)
121 3jro_A Fusion protein of prote 99.9 7.1E-21 2.4E-25 233.6 21.9 242 254-529 6-284 (753)
122 2xyi_A Probable histone-bindin 99.9 6.2E-20 2.1E-24 210.0 27.5 302 69-421 47-410 (430)
123 1k32_A Tricorn protease; prote 99.9 2.9E-19 9.8E-24 227.6 36.4 218 224-481 250-501 (1045)
124 1k32_A Tricorn protease; prote 99.8 1.6E-18 5.4E-23 220.8 37.4 430 22-569 17-499 (1045)
125 2w18_A PALB2, fancn, partner a 99.8 5.5E-19 1.9E-23 189.2 25.8 147 223-379 183-354 (356)
126 3bws_A Protein LP49; two-domai 99.8 1E-18 3.4E-23 199.6 28.8 229 206-482 167-432 (433)
127 3bws_A Protein LP49; two-domai 99.8 1.9E-18 6.4E-23 197.4 27.3 260 224-529 128-431 (433)
128 1l0q_A Surface layer protein; 99.8 2.6E-18 8.8E-23 193.3 27.8 223 224-485 37-278 (391)
129 1nir_A Nitrite reductase; hemo 99.8 3.9E-17 1.3E-21 191.7 31.6 319 74-486 144-518 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.8 7.6E-18 2.6E-22 191.5 21.7 202 224-464 184-409 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.8 7E-17 2.4E-21 198.1 31.0 338 68-484 37-461 (741)
132 1nir_A Nitrite reductase; hemo 99.8 5.9E-17 2E-21 190.2 26.9 324 24-423 142-516 (543)
133 1xfd_A DIP, dipeptidyl aminope 99.7 3.5E-17 1.2E-21 200.1 22.1 315 69-472 18-429 (723)
134 2hqs_A Protein TOLB; TOLB, PAL 99.7 4.4E-16 1.5E-20 176.9 25.5 223 240-505 159-406 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.7 1.1E-15 3.8E-20 186.2 27.2 229 224-484 126-437 (706)
136 2ojh_A Uncharacterized protein 99.7 2.9E-15 9.8E-20 160.3 26.6 241 38-362 20-283 (297)
137 2ecf_A Dipeptidyl peptidase IV 99.7 4.9E-15 1.7E-19 181.6 28.4 263 224-528 114-457 (741)
138 3o4h_A Acylamino-acid-releasin 99.7 3.9E-15 1.3E-19 177.1 25.9 245 21-362 23-293 (582)
139 1ri6_A Putative isomerase YBHE 99.7 9.1E-14 3.1E-18 152.4 32.6 276 32-384 6-312 (343)
140 3o4h_A Acylamino-acid-releasin 99.7 1E-14 3.6E-19 173.4 26.6 185 225-480 116-311 (582)
141 2z3z_A Dipeptidyl aminopeptida 99.6 2.3E-14 7.7E-19 174.7 29.2 312 22-384 84-437 (706)
142 3hfq_A Uncharacterized protein 99.6 3.9E-14 1.3E-18 156.4 28.2 242 224-486 45-323 (347)
143 1ri6_A Putative isomerase YBHE 99.6 1.7E-14 5.9E-19 158.2 24.8 233 224-487 43-315 (343)
144 1xfd_A DIP, dipeptidyl aminope 99.6 1.3E-15 4.4E-20 186.2 16.4 298 260-574 20-395 (723)
145 1z68_A Fibroblast activation p 99.6 3.1E-15 1.1E-19 182.8 18.8 326 71-484 19-445 (719)
146 2oit_A Nucleoporin 214KDA; NH2 99.6 1.8E-15 6.3E-20 172.6 13.8 217 259-529 38-277 (434)
147 3hfq_A Uncharacterized protein 99.6 5.3E-13 1.8E-17 147.3 33.1 284 39-387 15-324 (347)
148 1pby_B Quinohemoprotein amine 99.6 6.5E-14 2.2E-18 153.2 25.0 220 224-484 39-312 (337)
149 3u4y_A Uncharacterized protein 99.6 2.2E-13 7.4E-18 149.1 28.9 229 26-341 4-255 (331)
150 3u4y_A Uncharacterized protein 99.6 1.2E-13 4E-18 151.3 26.2 227 226-485 5-255 (331)
151 3vgz_A Uncharacterized protein 99.6 2.6E-13 9.1E-18 149.6 26.8 218 224-475 94-336 (353)
152 2ojh_A Uncharacterized protein 99.6 2.6E-13 8.8E-18 144.9 24.5 252 273-562 17-292 (297)
153 4a5s_A Dipeptidyl peptidase 4 99.6 5.1E-13 1.7E-17 163.5 30.3 245 69-388 18-359 (740)
154 3scy_A Hypothetical bacterial 99.6 2.5E-12 8.7E-17 142.7 32.9 282 39-388 26-345 (361)
155 3vgz_A Uncharacterized protein 99.6 1.1E-12 3.9E-17 144.5 29.8 259 224-514 46-333 (353)
156 1pby_B Quinohemoprotein amine 99.6 3.9E-13 1.3E-17 146.9 25.1 235 231-484 2-271 (337)
157 2oit_A Nucleoporin 214KDA; NH2 99.5 9.8E-14 3.4E-18 158.2 20.1 205 256-480 91-331 (434)
158 3scy_A Hypothetical bacterial 99.5 2.9E-12 9.9E-17 142.2 29.3 260 23-342 53-343 (361)
159 1jmx_B Amine dehydrogenase; ox 99.5 2.2E-13 7.5E-18 149.9 19.4 156 226-390 7-183 (349)
160 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.9E-12 6.3E-17 144.2 23.8 236 224-484 45-343 (365)
161 1jmx_B Amine dehydrogenase; ox 99.5 2E-12 6.7E-17 142.2 22.8 278 25-347 5-334 (349)
162 1z68_A Fibroblast activation p 99.4 3E-13 1E-17 165.1 14.7 232 224-482 65-391 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.4 4E-12 1.4E-16 155.6 22.3 255 261-529 21-352 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.4 9.5E-12 3.3E-16 138.5 22.5 249 22-340 42-343 (365)
165 2oiz_A Aromatic amine dehydrog 99.4 3.8E-11 1.3E-15 133.3 24.8 275 22-362 52-359 (361)
166 3pe7_A Oligogalacturonate lyas 99.4 1.4E-11 4.9E-16 137.8 19.6 220 225-480 87-380 (388)
167 3pe7_A Oligogalacturonate lyas 99.3 7E-11 2.4E-15 132.2 24.4 277 262-573 41-383 (388)
168 3azo_A Aminopeptidase; POP fam 99.3 7.8E-10 2.7E-14 133.3 33.1 111 224-342 135-278 (662)
169 3fvz_A Peptidyl-glycine alpha- 99.2 6.6E-10 2.3E-14 121.6 23.9 237 224-482 29-322 (329)
170 3c5m_A Oligogalacturonate lyas 99.2 1.2E-09 4.1E-14 122.2 24.0 272 261-574 40-384 (396)
171 3fvz_A Peptidyl-glycine alpha- 99.2 1.3E-09 4.4E-14 119.3 22.5 266 5-339 14-323 (329)
172 1q7f_A NHL, brain tumor CG1071 99.2 5.2E-09 1.8E-13 111.6 25.8 236 23-338 33-280 (286)
173 1q7f_A NHL, brain tumor CG1071 99.2 4E-09 1.4E-13 112.5 24.9 222 224-482 35-280 (286)
174 2gop_A Trilobed protease; beta 99.2 3.7E-09 1.3E-13 116.1 24.9 230 229-506 23-311 (347)
175 2bkl_A Prolyl endopeptidase; m 99.1 1.2E-09 4.2E-14 132.4 21.8 232 224-488 126-403 (695)
176 3azo_A Aminopeptidase; POP fam 99.1 4E-09 1.4E-13 127.1 25.7 222 265-513 87-353 (662)
177 3c5m_A Oligogalacturonate lyas 99.1 8.3E-10 2.8E-14 123.5 17.7 148 225-387 87-278 (396)
178 2oiz_A Aromatic amine dehydrog 99.1 3.8E-08 1.3E-12 109.0 30.6 282 39-390 30-344 (361)
179 2xdw_A Prolyl endopeptidase; a 99.1 1.5E-08 5.2E-13 123.1 28.2 129 224-362 238-391 (710)
180 3e5z_A Putative gluconolactona 99.1 6.2E-09 2.1E-13 111.7 21.9 227 223-485 32-289 (296)
181 2xdw_A Prolyl endopeptidase; a 99.1 2.6E-09 9E-14 129.9 20.2 228 224-484 130-416 (710)
182 2gop_A Trilobed protease; beta 99.1 6.5E-09 2.2E-13 114.1 21.4 216 224-488 64-336 (347)
183 2dg1_A DRP35, lactonase; beta 99.0 1.3E-08 4.4E-13 111.1 22.0 231 227-483 14-264 (333)
184 1rwi_B Serine/threonine-protei 99.0 1.9E-08 6.5E-13 106.0 21.0 224 224-482 29-264 (270)
185 2bkl_A Prolyl endopeptidase; m 99.0 2.9E-08 1E-12 120.3 25.2 146 224-384 232-399 (695)
186 1yr2_A Prolyl oligopeptidase; 99.0 7.7E-09 2.6E-13 126.4 19.9 233 224-489 168-448 (741)
187 1yr2_A Prolyl oligopeptidase; 98.9 6.7E-08 2.3E-12 118.0 25.5 148 224-384 273-443 (741)
188 3no2_A Uncharacterized protein 98.9 1.3E-07 4.4E-12 100.4 23.2 213 227-471 2-231 (276)
189 2dg1_A DRP35, lactonase; beta 98.9 1.4E-07 4.9E-12 102.7 23.9 223 223-474 49-301 (333)
190 3sjl_D Methylamine dehydrogena 98.9 1.5E-07 5.2E-12 103.3 23.8 260 24-348 82-373 (386)
191 2mad_H Methylamine dehydrogena 98.9 7.9E-07 2.7E-11 98.6 29.4 75 261-345 271-357 (373)
192 3no2_A Uncharacterized protein 98.8 2.1E-07 7.2E-12 98.7 19.9 181 266-484 3-197 (276)
193 3e5z_A Putative gluconolactona 98.8 3.5E-07 1.2E-11 97.9 21.7 191 258-483 28-247 (296)
194 1rwi_B Serine/threonine-protei 98.8 3.1E-07 1.1E-11 96.5 20.7 128 225-362 114-245 (270)
195 2z2n_A Virginiamycin B lyase; 98.8 3.6E-06 1.2E-10 89.5 29.2 227 225-488 21-260 (299)
196 1qks_A Cytochrome CD1 nitrite 98.8 1.8E-06 6E-11 101.0 28.3 109 228-346 165-283 (567)
197 1xip_A Nucleoporin NUP159; bet 98.7 2.4E-07 8.1E-12 102.2 18.5 103 224-342 43-159 (388)
198 3dsm_A Uncharacterized protein 98.7 2.1E-06 7E-11 93.5 25.3 224 228-484 52-303 (328)
199 2z2n_A Virginiamycin B lyase; 98.7 1.9E-05 6.4E-10 83.9 31.8 267 257-570 14-293 (299)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 6.5E-06 2.2E-10 88.4 27.6 102 228-338 185-299 (314)
201 3dsm_A Uncharacterized protein 98.7 3.9E-06 1.3E-10 91.3 25.9 231 261-529 48-301 (328)
202 1xip_A Nucleoporin NUP159; bet 98.6 6.8E-07 2.3E-11 98.6 17.5 173 259-514 39-231 (388)
203 3c75_H MADH, methylamine dehyd 98.6 4.6E-06 1.6E-10 93.2 23.7 74 262-345 324-409 (426)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 3E-06 1E-10 91.1 21.4 226 224-483 23-300 (314)
205 1qks_A Cytochrome CD1 nitrite 98.6 2E-06 6.8E-11 100.5 21.2 187 264-485 163-376 (567)
206 2qc5_A Streptogramin B lactona 98.5 2.3E-05 7.9E-10 83.2 27.2 231 22-338 22-260 (300)
207 3iuj_A Prolyl endopeptidase; h 98.5 4.6E-07 1.6E-11 109.6 15.3 235 224-489 134-412 (693)
208 2qc5_A Streptogramin B lactona 98.5 2.3E-05 7.7E-10 83.2 25.5 228 225-486 26-263 (300)
209 2mad_H Methylamine dehydrogena 98.5 0.00012 4E-09 81.1 31.9 292 26-388 27-356 (373)
210 1mda_H Methylamine dehydrogena 98.4 7E-06 2.4E-10 90.2 19.3 77 262-348 269-356 (368)
211 3sjl_D Methylamine dehydrogena 98.4 4.7E-05 1.6E-09 83.6 24.8 295 26-390 39-371 (386)
212 3g4e_A Regucalcin; six bladed 98.4 1.8E-05 6E-10 84.7 21.1 127 227-362 21-160 (297)
213 3hrp_A Uncharacterized protein 98.4 5.1E-05 1.8E-09 85.1 25.7 245 24-336 135-408 (409)
214 3g4e_A Regucalcin; six bladed 98.3 2.7E-05 9.2E-10 83.2 21.3 96 261-362 153-253 (297)
215 2qe8_A Uncharacterized protein 98.3 1.5E-05 5E-10 87.3 19.4 117 227-362 175-302 (343)
216 3hrp_A Uncharacterized protein 98.3 2.5E-05 8.4E-10 87.7 21.5 150 224-383 136-299 (409)
217 2ghs_A AGR_C_1268P; regucalcin 98.3 5.5E-05 1.9E-09 82.1 22.7 144 225-381 55-209 (326)
218 3iuj_A Prolyl endopeptidase; h 98.2 1E-05 3.6E-10 97.6 16.3 196 254-486 125-363 (693)
219 3dr2_A Exported gluconolactona 98.2 0.00028 9.5E-09 75.5 24.5 67 261-338 49-116 (305)
220 2ghs_A AGR_C_1268P; regucalcin 98.2 8.2E-05 2.8E-09 80.7 20.3 94 261-362 183-283 (326)
221 3c75_H MADH, methylamine dehyd 98.1 0.002 6.8E-08 71.9 30.9 270 266-570 82-400 (426)
222 2qe8_A Uncharacterized protein 98.1 0.00016 5.5E-09 78.9 21.9 122 224-348 22-164 (343)
223 4a2l_A BT_4663, two-component 98.0 0.024 8.2E-07 69.3 39.7 374 25-489 220-621 (795)
224 2hz6_A Endoplasmic reticulum t 98.0 4.3E-06 1.5E-10 92.6 5.3 178 267-484 8-194 (369)
225 3dr2_A Exported gluconolactona 97.9 0.00035 1.2E-08 74.7 19.5 130 224-362 50-199 (305)
226 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0025 8.7E-08 70.1 26.7 251 267-569 102-375 (376)
227 4a2l_A BT_4663, two-component 97.9 0.11 3.6E-06 63.5 45.9 208 257-490 356-579 (795)
228 1yiq_A Quinohemoprotein alcoho 97.8 0.0015 5.3E-08 78.2 23.5 83 261-344 239-344 (689)
229 1mda_H Methylamine dehydrogena 97.8 0.00024 8.3E-09 77.9 14.7 75 261-338 69-158 (368)
230 2ece_A 462AA long hypothetical 97.6 0.013 4.4E-07 64.9 24.7 198 263-481 88-351 (462)
231 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.0059 2E-07 67.1 22.7 144 268-421 188-337 (376)
232 2hz6_A Endoplasmic reticulum t 97.5 6.9E-06 2.4E-10 91.0 -2.0 173 229-422 8-193 (369)
233 1fwx_A Nitrous oxide reductase 97.5 0.00099 3.4E-08 76.3 15.4 238 227-487 98-436 (595)
234 3hxj_A Pyrrolo-quinoline quino 97.5 0.0022 7.4E-08 68.9 17.4 107 261-387 141-249 (330)
235 2ece_A 462AA long hypothetical 97.5 0.019 6.5E-07 63.5 24.6 67 259-326 323-399 (462)
236 1yiq_A Quinohemoprotein alcoho 97.5 0.019 6.5E-07 68.7 26.7 72 267-346 120-200 (689)
237 1kb0_A Quinohemoprotein alcoho 97.4 0.011 3.6E-07 70.8 23.9 75 267-347 127-208 (677)
238 3v9f_A Two-component system se 97.4 0.44 1.5E-05 57.8 42.8 204 258-490 363-576 (781)
239 1k3i_A Galactose oxidase precu 97.4 0.02 6.8E-07 68.3 26.0 112 221-340 188-325 (656)
240 3ei3_A DNA damage-binding prot 97.4 0.075 2.5E-06 67.0 31.9 71 21-97 513-590 (1158)
241 1kb0_A Quinohemoprotein alcoho 97.3 0.032 1.1E-06 66.6 26.3 125 259-390 315-515 (677)
242 1fwx_A Nitrous oxide reductase 97.3 0.0017 5.8E-08 74.4 13.9 69 260-338 280-361 (595)
243 2xe4_A Oligopeptidase B; hydro 97.1 0.026 8.8E-07 68.4 22.3 108 224-339 179-305 (751)
244 3hxj_A Pyrrolo-quinoline quino 97.1 0.012 4E-07 63.0 17.0 251 261-571 64-323 (330)
245 3nol_A Glutamine cyclotransfer 97.0 0.075 2.6E-06 54.4 21.3 114 258-389 43-162 (262)
246 1npe_A Nidogen, entactin; glyc 97.0 0.42 1.4E-05 49.2 28.6 94 258-362 168-262 (267)
247 1kv9_A Type II quinohemoprotei 96.9 0.094 3.2E-06 62.4 24.0 82 261-345 234-340 (668)
248 2iwa_A Glutamine cyclotransfer 96.8 0.17 5.7E-06 52.2 22.4 115 261-390 25-143 (266)
249 2xe4_A Oligopeptidase B; hydro 96.8 0.027 9.2E-07 68.2 18.7 97 254-362 169-282 (751)
250 2xbg_A YCF48-like protein; pho 96.7 0.58 2E-05 50.0 26.7 120 256-389 161-285 (327)
251 1npe_A Nidogen, entactin; glyc 96.5 0.19 6.5E-06 51.8 20.8 96 257-362 79-178 (267)
252 2fp8_A Strictosidine synthase; 96.5 0.14 4.7E-06 54.7 20.0 75 261-345 189-275 (322)
253 2fp8_A Strictosidine synthase; 96.5 0.25 8.6E-06 52.6 22.1 98 260-362 22-138 (322)
254 2ism_A Putative oxidoreductase 96.4 0.91 3.1E-05 49.0 26.1 63 256-327 267-334 (352)
255 2iwa_A Glutamine cyclotransfer 96.4 0.16 5.5E-06 52.3 18.6 149 224-389 26-188 (266)
256 3mbr_X Glutamine cyclotransfer 96.3 0.39 1.3E-05 48.5 20.8 114 258-390 21-141 (243)
257 3a9g_A Putative uncharacterize 96.2 1.8 6E-05 46.8 28.1 66 256-326 258-330 (354)
258 1k3i_A Galactose oxidase precu 96.2 0.11 3.6E-06 61.9 18.6 72 261-340 190-276 (656)
259 1kv9_A Type II quinohemoprotei 96.1 2.6 8.7E-05 49.9 30.0 72 268-346 117-195 (668)
260 3v9f_A Two-component system se 96.1 3.9 0.00013 49.3 45.5 212 257-490 312-532 (781)
261 3nok_A Glutaminyl cyclase; bet 96.1 0.24 8.2E-06 50.6 17.6 113 258-389 55-171 (268)
262 3nok_A Glutaminyl cyclase; bet 95.9 0.077 2.6E-06 54.3 12.9 111 230-347 106-219 (268)
263 2p4o_A Hypothetical protein; p 95.5 0.84 2.9E-05 48.0 20.5 71 260-341 35-107 (306)
264 1w6s_A Methanol dehydrogenase 95.5 2.4 8.2E-05 49.3 25.6 80 262-347 111-200 (599)
265 2p4o_A Hypothetical protein; p 95.4 1.8 6.2E-05 45.4 22.6 108 224-339 37-148 (306)
266 3mbr_X Glutamine cyclotransfer 95.3 0.32 1.1E-05 49.2 15.1 147 229-390 74-223 (243)
267 3ei3_A DNA damage-binding prot 95.3 9.2 0.00031 48.1 48.7 105 221-343 484-596 (1158)
268 3v64_C Agrin; beta propeller, 95.0 3.7 0.00013 44.0 23.7 95 258-362 117-214 (349)
269 3nol_A Glutamine cyclotransfer 94.9 0.12 4.1E-06 52.9 10.6 111 230-347 97-210 (262)
270 2ad6_A Methanol dehydrogenase 94.9 4.9 0.00017 46.4 25.9 38 258-296 303-343 (571)
271 2xbg_A YCF48-like protein; pho 94.6 5.5 0.00019 42.2 28.7 135 209-362 80-216 (327)
272 3v65_B Low-density lipoprotein 94.6 4.1 0.00014 44.4 23.1 94 259-362 161-257 (386)
273 3tc9_A Hypothetical hydrolase; 94.5 7.1 0.00024 43.2 25.2 95 257-362 179-281 (430)
274 3pbp_A Nucleoporin NUP82; beta 94.3 0.28 9.6E-06 53.5 12.1 74 25-98 71-158 (452)
275 3qqz_A Putative uncharacterize 93.0 8.6 0.00029 39.0 29.2 82 255-337 68-150 (255)
276 2ism_A Putative oxidoreductase 92.8 12 0.00041 40.0 23.4 67 257-326 75-153 (352)
277 3v65_B Low-density lipoprotein 92.7 9.4 0.00032 41.5 21.6 98 255-362 114-213 (386)
278 3mkq_B Coatomer subunit alpha; 91.3 0.37 1.3E-05 45.8 6.9 54 864-924 5-58 (177)
279 3das_A Putative oxidoreductase 91.1 18 0.00061 38.5 26.3 61 23-85 35-100 (347)
280 3v64_C Agrin; beta propeller, 91.1 18 0.00062 38.5 26.6 79 258-346 204-283 (349)
281 3pbp_A Nucleoporin NUP82; beta 90.4 4.5 0.00016 44.1 15.1 181 266-486 30-217 (452)
282 3qqz_A Putative uncharacterize 89.7 19 0.00064 36.5 25.2 218 21-284 28-250 (255)
283 2p9w_A MAL S 1 allergenic prot 89.7 13 0.00043 39.3 17.6 78 261-342 17-116 (334)
284 3tc9_A Hypothetical hydrolase; 88.1 9.8 0.00034 42.0 16.6 72 259-338 228-301 (430)
285 3m0c_C LDL receptor, low-densi 88.0 52 0.0018 39.4 26.7 95 258-362 472-569 (791)
286 1w6s_A Methanol dehydrogenase 87.7 16 0.00056 42.2 18.7 77 269-346 63-148 (599)
287 3p5b_L Low density lipoprotein 87.0 38 0.0013 36.8 28.7 95 258-362 160-257 (400)
288 4hw6_A Hypothetical protein, I 86.5 43 0.0015 36.8 23.3 75 259-336 337-431 (433)
289 2vpj_A Kelch-like protein 12; 86.5 31 0.0011 35.3 20.2 65 463-528 206-276 (301)
290 2ad6_A Methanol dehydrogenase 86.0 4.7 0.00016 46.6 12.9 61 277-347 443-503 (571)
291 2g8s_A Glucose/sorbosone dehyd 85.5 41 0.0014 35.8 28.3 74 256-336 270-350 (353)
292 3kya_A Putative phosphatase; s 85.5 51 0.0017 36.9 24.3 74 266-342 389-479 (496)
293 4hw6_A Hypothetical protein, I 84.3 53 0.0018 36.0 23.1 57 258-325 140-199 (433)
294 3s94_A LRP-6, low-density lipo 84.2 67 0.0023 37.1 35.5 79 258-346 172-251 (619)
295 3ii7_A Kelch-like protein 7; p 83.7 42 0.0014 34.4 20.5 65 463-528 200-270 (306)
296 3amr_A 3-phytase; beta-propell 82.4 54 0.0019 34.7 20.6 59 277-336 98-160 (355)
297 2xn4_A Kelch-like protein 2; s 82.3 47 0.0016 33.9 18.9 65 463-528 204-274 (302)
298 3sov_A LRP-6, low-density lipo 81.8 54 0.0018 34.2 24.4 94 259-362 81-177 (318)
299 1ijq_A LDL receptor, low-densi 81.4 54 0.0019 34.0 27.6 80 258-345 165-245 (316)
300 1flg_A Protein (quinoprotein e 81.1 27 0.00094 40.1 16.7 30 266-296 331-363 (582)
301 1flg_A Protein (quinoprotein e 81.0 4.9 0.00017 46.5 10.2 61 277-347 465-525 (582)
302 3p5b_L Low density lipoprotein 80.8 67 0.0023 34.7 22.9 99 256-362 111-213 (400)
303 1cru_A Protein (soluble quinop 80.6 17 0.00059 40.4 14.2 18 310-327 146-163 (454)
304 3a9g_A Putative uncharacterize 79.1 18 0.00062 38.7 13.4 76 257-339 29-115 (354)
305 3sre_A PON1, serum paraoxonase 78.0 76 0.0026 33.7 24.3 61 259-328 223-287 (355)
306 3das_A Putative oxidoreductase 77.4 59 0.002 34.5 16.5 81 255-338 30-116 (347)
307 1zgk_A Kelch-like ECH-associat 76.4 73 0.0025 32.7 18.5 65 463-528 215-285 (308)
308 1n7d_A LDL receptor, low-densi 75.9 22 0.00077 41.9 14.1 80 260-347 543-623 (699)
309 3s25_A Hypothetical 7-bladed b 75.2 80 0.0028 32.6 18.1 65 262-338 189-255 (302)
310 4gq2_M Nucleoporin NUP120; bet 73.6 1.1E+02 0.0036 37.6 19.6 38 259-297 238-275 (950)
311 3m0c_C LDL receptor, low-densi 72.3 1.7E+02 0.0057 35.0 24.5 99 255-362 422-525 (791)
312 1ijq_A LDL receptor, low-densi 71.5 98 0.0034 32.0 27.0 94 259-362 79-175 (316)
313 1bpo_A Protein (clathrin); cla 71.4 1.2E+02 0.0042 33.1 22.8 65 31-97 116-187 (494)
314 3sov_A LRP-6, low-density lipo 71.3 1E+02 0.0035 32.0 24.3 79 258-346 167-246 (318)
315 1tl2_A L10, protein (tachylect 70.3 8.9 0.0003 37.9 7.0 60 261-331 92-156 (236)
316 1tl2_A L10, protein (tachylect 70.2 16 0.00053 36.1 8.7 98 224-336 8-114 (236)
317 3kya_A Putative phosphatase; s 70.0 94 0.0032 34.7 16.4 73 259-338 249-341 (496)
318 3s25_A Hypothetical 7-bladed b 69.7 1.1E+02 0.0036 31.7 18.7 54 262-328 150-204 (302)
319 1cru_A Protein (soluble quinop 69.3 43 0.0015 37.1 13.6 68 257-326 27-98 (454)
320 1n7d_A LDL receptor, low-densi 68.8 12 0.00042 44.2 9.5 71 260-339 456-529 (699)
321 2vpj_A Kelch-like protein 12; 65.6 1.2E+02 0.0041 30.7 18.9 27 463-489 253-285 (301)
322 2p9w_A MAL S 1 allergenic prot 61.4 1.6E+02 0.0055 30.8 18.5 75 259-337 139-214 (334)
323 4gq2_M Nucleoporin NUP120; bet 60.6 57 0.0019 40.0 13.4 38 308-345 236-273 (950)
324 2g8s_A Glucose/sorbosone dehyd 60.4 1E+02 0.0035 32.5 14.1 67 259-327 68-149 (353)
325 3ii7_A Kelch-like protein 7; p 58.3 1.6E+02 0.0055 29.8 19.1 27 463-489 247-279 (306)
326 2uvk_A YJHT; unknown function, 54.4 2E+02 0.007 29.8 20.0 56 460-516 249-327 (357)
327 3s94_A LRP-6, low-density lipo 52.7 3.1E+02 0.011 31.4 23.7 95 258-362 85-182 (619)
328 2xn4_A Kelch-like protein 2; s 51.6 2E+02 0.007 28.9 18.7 27 463-489 251-283 (302)
329 3sre_A PON1, serum paraoxonase 51.0 2.5E+02 0.0084 29.7 21.5 62 261-326 116-183 (355)
330 1xi4_A Clathrin heavy chain; a 50.0 2.1E+02 0.0072 36.4 15.5 37 258-295 260-296 (1630)
331 4fhn_B Nucleoporin NUP120; pro 47.4 74 0.0025 39.9 11.7 37 260-297 241-277 (1139)
332 4fhn_B Nucleoporin NUP120; pro 46.7 56 0.0019 41.0 10.4 39 308-346 238-276 (1139)
333 1xi4_A Clathrin heavy chain; a 42.0 3E+02 0.01 35.1 15.1 113 227-348 74-197 (1630)
334 3kci_A Probable E3 ubiquitin-p 39.3 3.7E+02 0.013 28.4 18.5 265 27-334 7-289 (389)
335 1suu_A DNA gyrase subunit A; t 38.9 3.4E+02 0.012 27.9 21.8 113 221-338 115-231 (312)
336 2be1_A Serine/threonine-protei 38.3 2.1E+02 0.0072 30.0 11.7 67 269-343 11-81 (339)
337 3qhy_B Beta-lactamase inhibito 37.3 3.2E+02 0.011 27.5 12.9 94 221-337 34-128 (282)
338 1bpo_A Protein (clathrin); cla 36.1 4.7E+02 0.016 28.6 24.1 114 226-348 73-197 (494)
339 3qhy_B Beta-lactamase inhibito 36.0 3.5E+02 0.012 27.2 20.1 221 22-336 24-244 (282)
340 3sbq_A Nitrous-oxide reductase 35.3 33 0.0011 38.7 4.9 104 224-327 328-454 (638)
341 2ao6_B NCOA-2, 14-MER fragment 34.6 26 0.00089 20.5 2.0 19 762-780 3-21 (26)
342 2be1_A Serine/threonine-protei 33.9 48 0.0017 35.0 5.8 115 223-347 13-139 (339)
343 1klx_A Cysteine rich protein B 30.6 84 0.0029 27.7 6.3 58 868-925 81-138 (138)
344 2wg3_C Hedgehog-interacting pr 30.2 3.3E+02 0.011 29.9 12.2 62 257-318 14-79 (463)
345 3zwu_A Alkaline phosphatase PH 29.0 1.3E+02 0.0046 34.3 8.8 57 261-325 480-548 (592)
346 3mv2_A Coatomer subunit alpha; 29.0 2.7E+02 0.0091 28.9 10.1 63 849-914 187-257 (325)
347 2xzh_A Clathrin heavy chain 1; 28.7 5.3E+02 0.018 27.0 26.3 115 226-348 74-198 (365)
348 2woz_A Kelch repeat and BTB do 27.9 4.2E+02 0.014 26.7 12.2 66 462-528 157-229 (318)
349 3v7d_A Suppressor of kinetocho 25.6 46 0.0016 31.2 3.5 56 826-889 60-118 (169)
350 1zso_A Hypothetical protein; s 25.6 1.5E+02 0.005 27.5 6.8 48 456-504 113-161 (164)
351 3mkq_B Coatomer subunit alpha; 23.6 76 0.0026 29.9 4.5 71 842-922 21-98 (177)
352 3sbq_A Nitrous-oxide reductase 23.4 1.7E+02 0.0057 33.2 7.8 72 261-338 327-408 (638)
353 3ott_A Two-component system se 21.7 9.8E+02 0.033 27.7 36.8 70 259-340 192-262 (758)
354 4a0p_A LRP6, LRP-6, low-densit 21.5 9.3E+02 0.032 27.4 27.5 242 139-428 304-556 (628)
355 2xzh_A Clathrin heavy chain 1; 20.7 7.4E+02 0.025 25.9 24.8 40 257-297 260-299 (365)
356 3amr_A 3-phytase; beta-propell 20.4 7.5E+02 0.026 25.9 23.9 68 260-336 133-208 (355)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.9e-40 Score=394.83 Aligned_cols=462 Identities=11% Similarity=0.061 Sum_probs=322.7
Q ss_pred CCceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
+....++|||||++||++.+++++||+.. .......+. .+.+.+.+++|||||++||+++.||+|+|||+..+
T Consensus 19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~-~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp TCCCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CceeEEeeCCCCCEEEeCCCCEEEEecCC-CcccCeEec------CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 34555899999999999988999999995 333233222 24567889999999999999999999999998533
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeEEEEecCC--cEEEEecCCccccceeecccCCC
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFELVHSSND 175 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg--~i~~~~w~~~~~~~~~~~~~~~~ 175 (927)
...... . +.+..+.|. +++++++.+++++.+. ...++.|+.... .
T Consensus 92 ~~~~~~---------------~------~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~--~-------- 140 (611)
T 1nr0_A 92 THILKT---------------T------IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--N-------- 140 (611)
T ss_dssp TCCEEE---------------E------EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--C--------
T ss_pred cceeeE---------------e------ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC--c--------
Confidence 211000 0 112223344 4567777888776542 345556773211 1
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeecccce--
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK-- 252 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~-- 252 (927)
..+.+|...|.++.| +|+|. .+++++.|+++++|+....+.
T Consensus 141 --------------------------~~l~gh~~~v~~v~f----------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 141 --------------------------GNLTGQARAMNSVDF----------KPSRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp --------------------------BCCCCCSSCEEEEEE----------CSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred --------------------------ceecCCCCCceEEEE----------CCCCCeEEEEEeCCCeEEEEECCCCeEee
Confidence 113456677887765 67876 689999999999999766543
Q ss_pred -ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 253 -ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 253 -~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
+.+|.+.| +++|+|++++||+|+.||+|++||+.+ ++....+.... ....+|.+.|.+++|+|||++||+|+.|++
T Consensus 185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~s~s~D~~ 262 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADKT 262 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccc-ccccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence 37899999 999999999999999999999999987 66666553100 001139999999999999999999999999
Q ss_pred EEEEEccCCeeEEEe-------------------------------------------ccccccceecceecCCCCCCcc
Q 002405 331 LTVWSVSGCRLMSTI-------------------------------------------RQISLSSISSPIVKPNQDCKYE 367 (927)
Q Consensus 331 v~vW~~~~~~~~~~l-------------------------------------------~~~~~~~v~s~~~sp~~~~~~~ 367 (927)
|++||+.++++..++ .+| ...|.+++|+|++ .
T Consensus 263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg----~ 337 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITALSSSADG----K 337 (611)
T ss_dssp EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS----S
T ss_pred EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEEEEeCCC----C
Confidence 999999877655433 345 6789999999998 8
Q ss_pred cccccc---eeEEEcCCCceEEEEE-cCCcceEEEEec--cceeeecccCCCeeeeeeeecCC-------------eEEE
Q 002405 368 PLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGED-------------RLLV 428 (927)
Q Consensus 368 ~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~-------------~~~~ 428 (927)
.+++++ ++++|+..++++.... .+|...+..+.+ ...+++++.|+++++|++..+.. ...+
T Consensus 338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 888876 8999999988876655 568888866665 66889999999999998643211 0000
Q ss_pred -eec--------CCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeE
Q 002405 429 -VQS--------EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ 498 (927)
Q Consensus 429 -~~~--------~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~ 498 (927)
... .+.....|+..+ .. ...|...+.+++|||||++||+|+.||.+ +||+.+++........+. -.
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~-~~-~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~--~~ 493 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGK-LT-EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP--AE 493 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTE-EE-EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS--SC
T ss_pred EEeCCCcEEEEEeCceEEEEeCCc-ee-eeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCC--Cc
Confidence 000 011112233222 11 12367789999999999999999999999 999988765433222222 23
Q ss_pred EEEEEee--CCEEEEEEeecCCCeEEEEEeeCCC-CCccce-eEE-EecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 499 SKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYH-LDQSSL-LCR-KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 499 v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~-l~~~~~-~~~-~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+..++|. +.++++++ .+..+++|+... ...... ... +.-+-..+.+++++.+|++++.|++|++|++.
T Consensus 494 v~~v~fspdg~~las~s-----~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 494 ITSVAFSNNGAFLVATD-----QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEEECTTSSEEEEEE-----TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEECCCCCEEEEEc-----CCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 6677775 55777662 345789998742 110000 000 11111235788999999999999999999863
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-38 Score=376.59 Aligned_cols=482 Identities=16% Similarity=0.195 Sum_probs=332.8
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
....++|||||++||+++ |++|+|||.. +..+..+. .+.+.+.+++|||||++||+++.|+.|++||+. +
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~------gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~ 88 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G 88 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEE------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEe------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-C
Confidence 455599999999999985 6799999974 33343332 245788999999999999999999999999953 2
Q ss_pred CceeecCCCCCC---------Cc-----------------------------cceeeeEEeeccc---------------
Q 002405 100 EKSIQIGGKQPS---------GL-----------------------------FFIKISLVLNEQL--------------- 126 (927)
Q Consensus 100 ~~~~~~~~~~~~---------~~-----------------------------~~~~~~~~~~~~~--------------- 126 (927)
.....+.++... +. .+....+......
T Consensus 89 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
T 2ymu_A 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccc
Confidence 211111111110 00 0000000000000
Q ss_pred ------ccccccceEE--EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCC-ccccCCC
Q 002405 127 ------PFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGL-ASVDTSG 197 (927)
Q Consensus 127 ------~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~~~~~~~ 197 (927)
........+. ++.+++..+++++.||.+++|+.+++.... ...+...+..+.+.++... .+...++
T Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~-----~~~~~~~v~~~~~s~dg~~l~~~~~d~ 243 (577)
T 2ymu_A 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDK 243 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE-----EECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEE-----EecCCCCEEEEEECCCCCEEEEEeCCC
Confidence 0001112222 345677889999999999886543322111 1234445555566665543 3333322
Q ss_pred ceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc--ceecCCCCeE-EEEEcCCCcEEEEE
Q 002405 198 AFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVG 274 (927)
Q Consensus 198 ~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~--~~~~~h~~~v-~v~~sp~~~~la~g 274 (927)
. ...+. .....+..+.-+......++++|||+.+++++.|+++++|+.... ....+|...+ +++|+|+++++|+|
T Consensus 244 ~-i~~w~-~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 244 T-VKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp C-EEEEC-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred E-EEEEe-CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEE
Confidence 2 22221 122222222222223345667899999999999999999985432 2237899999 99999999999999
Q ss_pred ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecccccccee
Q 002405 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 354 (927)
Q Consensus 275 ~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~ 354 (927)
+.||+|++||... ..+..+.+ |..+|.+++|+|||++||+|+.|+.+++|+.. ++++.++.+| ...|.
T Consensus 322 ~~d~~i~~w~~~~--~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~-~~~v~ 389 (577)
T 2ymu_A 322 SDDKTVKLWNRNG--QHLQTLTG--------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVR 389 (577)
T ss_dssp ETTSCEEEEETTS--CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECC-SSCEE
T ss_pred eCCCeEEEEeCCC--CeeEEEeC--------CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCC-CCCeE
Confidence 9999999999864 45666666 99999999999999999999999999999975 4677888887 78899
Q ss_pred cceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEE
Q 002405 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (927)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~ 428 (927)
+++|+|++ ..+++++ ++++|+. +++++....+|...|..+.+ ++.+++++.|+++++|+.. +..
T Consensus 390 ~~~~s~dg----~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~---- 459 (577)
T 2ymu_A 390 GVAFSPDG----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQL---- 459 (577)
T ss_dssp EEEECTTS----SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCE----
T ss_pred EEEECCCC----CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCE----
Confidence 99999998 7888776 7999996 45677788899999855554 7899999999999999842 221
Q ss_pred eecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--
Q 002405 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL-- 505 (927)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~-- 505 (927)
...+.+|..+|++++|+|||++||+|+.||.+ +||......+.+.. +. -.+..++|.
T Consensus 460 ----------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~--h~--~~v~~l~~s~d 519 (577)
T 2ymu_A 460 ----------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HS--SSVRGVAFSPD 519 (577)
T ss_dssp ----------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC--CS--SCEEEEEECTT
T ss_pred ----------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC--CC--CCEEEEEEcCC
Confidence 34566899999999999999999999999999 99976544444432 22 236677886
Q ss_pred CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEE-ecCCcc--EEEEccCCEEEEEEcCCeEEEEE
Q 002405 506 GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK-SLLAKP--IVMDVYEDYILVTYRPFDVHIFH 569 (927)
Q Consensus 506 ~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~l~v~~~d~~i~l~~ 569 (927)
+.++++++ .+..+++|+.. . ..+... .+...+ +.+++++++|++++.|++|++|+
T Consensus 520 g~~l~s~~-----~dg~v~lwd~~---~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASAS-----DDKTVKLWNRN---G-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEE-----TTSEEEEECTT---S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEE-----CcCEEEEEeCC---C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 45676663 33579999863 1 222222 223333 56788999999999999999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-37 Score=372.61 Aligned_cols=440 Identities=9% Similarity=0.103 Sum_probs=302.2
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCc-eeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC----cEEEEE
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQH-KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIF 94 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~-~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d----g~l~i~ 94 (927)
....++|||||++||+++ |++|+|||.... ......+. .+.+.+.+++|+|||+.||+++.+ +.+++|
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w 134 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 134 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec------ccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence 456689999999999995 889999998422 11122121 135788999999999999998865 588888
Q ss_pred EEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCC-eEEEEecCCcEEEEecCCccccceeecc
Q 002405 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK-HMLLGLSDGSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~-~l~v~~~dg~i~~~~w~~~~~~~~~~~~ 171 (927)
+. +..... +.++...|.+ +.+++. .+++++.|+.+++|+.. .....
T Consensus 135 d~--~~~~~~-----------------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~--~~~~~---- 183 (611)
T 1nr0_A 135 DT--GTSNGN-----------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP--PFKFK---- 183 (611)
T ss_dssp TT--CCBCBC-----------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT--TBEEE----
T ss_pred eC--CCCcce-----------------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC--CCeEe----
Confidence 73 221111 1222334444 445554 58899999999986532 21111
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID 251 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~ 251 (927)
..+.+|...|.++.| +|||+++++++.|+++++|+..+++
T Consensus 184 ------------------------------~~l~~H~~~V~~v~f----------spdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 184 ------------------------------STFGEHTKFVHSVRY----------NPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp ------------------------------EEECCCSSCEEEEEE----------CTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------eeeccccCceEEEEE----------CCCCCEEEEEECCCcEEEEECCCCc
Confidence 113456677877665 7899999999999999999976654
Q ss_pred ee----c------CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC--------------------
Q 002405 252 KE----L------GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW-------------------- 300 (927)
Q Consensus 252 ~~----~------~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~-------------------- 300 (927)
.. . +|.+.| +++|+|++++||+|+.|++|++||+.+ ++.+.++.....
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 32 1 799999 999999999999999999999999987 555444431100
Q ss_pred ---------------CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC
Q 002405 301 ---------------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (927)
Q Consensus 301 ---------------~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~ 365 (927)
....+|.+.|++++|+|||++|++|+.|++|++||+.++.+...+...|...|.+++|++++
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~--- 379 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--- 379 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC---
Confidence 00125999999999999999999999999999999998887766644337889999998765
Q ss_pred cccccccc---eeEEEcCCCceE-----------------------------------------EEEEcCCcceE--EEE
Q 002405 366 YEPLMSGT---SMMQWDEYGYRL-----------------------------------------YAIEEGSSERV--LIF 399 (927)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l-----------------------------------------~~~~~~~~~~v--~~~ 399 (927)
.+++++ ++++|+..+..+ +... .|...+ +++
T Consensus 380 --~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~ 456 (611)
T 1nr0_A 380 --DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVAL 456 (611)
T ss_dssp --CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEE
T ss_pred --cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEE
Confidence 344443 788887644210 0000 122333 455
Q ss_pred ec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-E
Q 002405 400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (927)
Q Consensus 400 ~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~ 477 (927)
++ ++.+++++.|+++++|++..+... .... .+|..+|++++|||||++||+++.|+.+ +
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~------------------~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVS------------------EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEE------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCcee------------------eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 56 889999999999999997543210 0122 5789999999999999999999999999 9
Q ss_pred EEccC-CcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEec-CCc--cEEEEc
Q 002405 478 YDIRQ-KKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL-LAK--PIVMDV 551 (927)
Q Consensus 478 wd~~s-~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~-~~~--~~~~~~ 551 (927)
|++.+ ++.... .....+...|..++|. +..+++++ .+..+++|+.+......+.....+ ... .+.+++
T Consensus 518 w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs-----~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~ 591 (611)
T 1nr0_A 518 YSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGS-----LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 591 (611)
T ss_dssp EEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred EEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEE-----CCCcEEEEECCCcccccchhhccCcccCeeEEEEcC
Confidence 99987 432111 0111122347788886 45777763 345799998752211110111111 122 245677
Q ss_pred cCCEEEEEEcCCeEEEEEE
Q 002405 552 YEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 552 ~~~~l~v~~~d~~i~l~~~ 570 (927)
.+. |++++.|++|++|++
T Consensus 592 d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 592 ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TTE-EEEEETTSCEEEEEC
T ss_pred CCE-EEEecCCCCEEEEec
Confidence 666 999999999999986
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-35 Score=350.64 Aligned_cols=445 Identities=16% Similarity=0.184 Sum_probs=308.5
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
....++|||||++||+++ |++|+|||.. +..+..+. .+.+.+.+++|+|||+.|++++.|+.+++|+....
T Consensus 59 ~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~~~~~------~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~ 130 (577)
T 2ymu_A 59 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEE------CCCCCEEEEEECCCCCEEEEEcCCCceeecccccc
Confidence 455589999999999885 7899999974 23333332 23567889999999999999999999999984311
Q ss_pred Ccee-----------ecCC------------------CC--------CCCccceeeeEEeecc-----------------
Q 002405 100 EKSI-----------QIGG------------------KQ--------PSGLFFIKISLVLNEQ----------------- 125 (927)
Q Consensus 100 ~~~~-----------~~~~------------------~~--------~~~~~~~~~~~~~~~~----------------- 125 (927)
.... .... .. .....+..+.+...+.
T Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC
Confidence 1000 0000 00 0000011111111000
Q ss_pred ----cccccccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCC-ccccCCCc
Q 002405 126 ----LPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGL-ASVDTSGA 198 (927)
Q Consensus 126 ----~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~~~~~~~~ 198 (927)
..+.++...|.+ +++++..+++++.||.+++|+.+++... ....+...+..+.+.++.+. .+...++.
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~-----~~~~~~~~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE-----EEecCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 011223344544 4567788999999999998654432211 12234445555566555543 33222221
Q ss_pred eecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc--eecCCCCeE-EEEEcCCCcEEEEEe
Q 002405 199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPEQQILAVGT 275 (927)
Q Consensus 199 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--~~~~h~~~v-~v~~sp~~~~la~g~ 275 (927)
...+. .....+..+.-+......++++|||+.+++++.|+++++|+..... ...+|...+ +++|+|++++||+|+
T Consensus 286 -i~~w~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 286 -VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp -EEEEE-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -EEEEe-CCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 11221 1112222222222233456678999999999999999999865432 237888888 999999999999999
Q ss_pred cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceec
Q 002405 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 355 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s 355 (927)
.||+|++|+.. ++.+..+.. |.++|++++|+|||++||+|+.|+.|++||.. ++++.++.+| ...|.+
T Consensus 364 ~dg~v~~~~~~--~~~~~~~~~--------~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~-~~~v~~ 431 (577)
T 2ymu_A 364 DDKTVKLWNRN--GQLLQTLTG--------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVWG 431 (577)
T ss_dssp TTSEEEEEETT--CCEEEEEEC--------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECC-SSCEEE
T ss_pred CCCEEEEEcCC--CCEEEEecC--------CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCC-CCCeEE
Confidence 99999999964 567778877 99999999999999999999999999999975 4677888887 788999
Q ss_pred ceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEe--c-cceeeecccCCCeeeeeeeecCCeEEEe
Q 002405 356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (927)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~ 429 (927)
++|+|++ ..+++++ ++++|+.. ++++....+|...|..+. + ++.+++++.|+++++|+. .++.
T Consensus 432 ~~~s~d~----~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~----- 500 (577)
T 2ymu_A 432 VAFSPDD----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL----- 500 (577)
T ss_dssp EEECTTS----SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCE-----
T ss_pred EEECCCC----CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCE-----
Confidence 9999998 7787765 89999975 566777888998885544 4 889999999999999994 2221
Q ss_pred ecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--C
Q 002405 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--G 506 (927)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~ 506 (927)
...+.+|..+|++++|||||++||+|+.||.+ +||........+.. |. -.|.+++|. +
T Consensus 501 ---------------~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~--h~--~~v~~~~fs~dg 561 (577)
T 2ymu_A 501 ---------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HS--SSVWGVAFSPDG 561 (577)
T ss_dssp ---------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC--CS--SCEEEEEECTTS
T ss_pred ---------------EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC--CC--CCEEEEEEcCCC
Confidence 45567899999999999999999999999999 99976554444422 22 236778886 5
Q ss_pred CEEEEEEeecCCCeEEEEEee
Q 002405 507 KIIVVCNYIDSSNTYELLFYP 527 (927)
Q Consensus 507 ~~li~~~~~~~~~~~~l~l~~ 527 (927)
+++++++ .+..+++|+
T Consensus 562 ~~l~s~~-----~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASAS-----SDKTVKLWN 577 (577)
T ss_dssp SCEEEEE-----TTSCEEEEC
T ss_pred CEEEEEe-----CCCEEEEeC
Confidence 5777763 234688885
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.6e-34 Score=355.88 Aligned_cols=651 Identities=16% Similarity=0.185 Sum_probs=393.7
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
....++|||||++||+++ +++|+||+.. .+..+..+. .+.+.+.+++|+|||+.||+++.||.|++|++..+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQ------VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEE------CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEe------cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 566699999999999885 7799999986 555544443 24577899999999999999999999999998644
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~ 177 (927)
...... .++...|+ ++++++..+++++.||.+.+|+++......
T Consensus 88 ~~~~~~-----------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~----------- 133 (814)
T 3mkq_A 88 EKVVDF-----------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE----------- 133 (814)
T ss_dssp CEEEEE-----------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE-----------
T ss_pred cEEEEE-----------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE-----------
Confidence 321111 11222343 456677889999999999998876421111
Q ss_pred ccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeeccccee---
Q 002405 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (927)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~~~~~--- 253 (927)
.....+...|.++.| +| ||..+++++.|+++++|+...+...
T Consensus 134 ------------------------~~~~~~~~~v~~~~~----------~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 134 ------------------------QTFEGHEHFVMCVAF----------NPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp ------------------------EEEECCSSCEEEEEE----------ETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred ------------------------EEEcCCCCcEEEEEE----------EcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence 112345566777665 67 7888999999999999997654322
Q ss_pred -cCCCCeE-EEEEcC--CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC
Q 002405 254 -LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (927)
Q Consensus 254 -~~h~~~v-~v~~sp--~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg 329 (927)
.+|...+ +++|+| +++++++|+.||+|++||+.+ +..+..+.+ |.+.|++++|+|||.+|++|+.||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEG--------HMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEEC--------CSSCEEEEEECSSSSEEEEEETTS
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcC--------CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3444677 999999 999999999999999999987 777888887 999999999999999999999999
Q ss_pred cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcCCcceEEEEec-cceee
Q 002405 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCL 406 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~ 406 (927)
.|++||+.+++...++..+ ...+.+++++|++. ...++++. .+.+|+..... ....+++ ++.++
T Consensus 251 ~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~ 317 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGR--KNYIASGFDNGFTVLSLGNDE----------PTLSLDPVGKLVW 317 (814)
T ss_dssp CEEEEETTTCSEEEEECCS-SSSEEEEEECTTCG--GGEEEEEETTEEEEEECSCCS----------CCEEECSSSEEEE
T ss_pred eEEEEECCCCcEEEEeecC-CCcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCCC----------ceeEECCCCCEEE
Confidence 9999999999999998887 67899999999971 11244443 56666654332 2344454 55555
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEee-cCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+++.+............. ..+... ..... .......+...+++++|||||+++|+++ +|.+ +|++...+
T Consensus 318 ~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 318 SGGKNAAASDIFTAVIRG------NEEVEQ--DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp ECCTTSCTTCEEEEECCS------CCCCCS--SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred ECcccccceeeeeeeccc------cccccc--CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc
Confidence 555444321111000000 000000 00000 0122334566789999999999999999 6777 99975433
Q ss_pred EEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccC---CEEEEE
Q 002405 485 WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE---DYILVT 559 (927)
Q Consensus 485 w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~v~ 559 (927)
-.. ...+..++|. ++.++++ ..+..+++|....- +......+.+++.+ +.|+++
T Consensus 389 ~~~--------~~~i~~~~~spdg~~la~~-----~~~g~v~l~~~~~~--------~~~~v~~~~~s~dg~~~~~l~~~ 447 (814)
T 3mkq_A 389 NKA--------FGKCQDFVWGPDSNSYALI-----DETGQIKYYKNFKE--------VTSWSVPMHSAIDRLFSGALLGV 447 (814)
T ss_dssp EEE--------EEECSEEEECTTSSCEEEE-----CTTCCEEEEETTEE--------CTTCCCCCSSCCCEEECSSSEEE
T ss_pred ccC--------CCceEEEEEeCCCCeEEEE-----eCCCcEEEEECCCC--------ccceEEcCCcCccceecceEEEE
Confidence 211 1235578887 4556655 23456888854210 00011122344544 578888
Q ss_pred EcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeccccCCCceEEEccCCCcccccccCCCCCccccccc------CCc
Q 002405 560 YRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAR------EPA 633 (927)
Q Consensus 560 ~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~ 633 (927)
+.|+.+.+|++.- + .. ++++. .|+. .+.+.. .+..+... ...
T Consensus 448 ~~d~~v~~~d~~~-~--------~~----~~~~~-----~~~~---~v~~s~-----------dg~~la~~~~~~~~~~~ 495 (814)
T 3mkq_A 448 KSDGFVYFFDWDN-G--------TL----VRRID-----VNAK---DVIWSD-----------NGELVMIVNTNSNGDEA 495 (814)
T ss_dssp EETTEEEEECTTT-C--------CE----EEEES-----SCEE---EEEECT-----------TSSEEEEEECCCSSCSC
T ss_pred ecCCEEEEEECCc-C--------cE----EEEEe-----cCCC---EEEEcC-----------CCCEEEEEEcCcccCCc
Confidence 9999999997631 1 10 11111 1111 111110 00111110 111
Q ss_pred eEEEEeeCCEEEE-------EecCCC---ceeeeccceeEEEEcCCCCccccCccceeeEEEECCCCcEEeccCCCCCCC
Q 002405 634 RCLILRANGELSL-------LDLDDG---RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPY 703 (927)
Q Consensus 634 ~~lil~~~g~l~~-------l~~~~~---~~~~l~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~~~~~~~~ 703 (927)
..+++..+.+... +.++.+ ....+.+.-|.+ ....|.+ -.++|....-++++.+.+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~s~~w~~--------~~~i~~t~~~~~~~~~~~~--- 562 (814)
T 3mkq_A 496 SGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESI--TSGKWVG--------DVFIFTTATNRLNYFVGGK--- 562 (814)
T ss_dssp SEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCC--SEEEEET--------TEEEEECTTSEEEEEETTE---
T ss_pred eEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEE--EeeEEeC--------CEEEEEcCCCeEEEEeCCe---
Confidence 2222221111000 000000 001111100110 0000111 1245544333455422111
Q ss_pred CcccccccCcccccccceeeeeeecCCcEEEEEeeeeecccCcCccceecCCcceecHHHH-HHHHHHccCHHHHHH-HH
Q 002405 704 KQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCL-LRHLLQRDKIEEALR-LA 781 (927)
Q Consensus 704 ~~~~~~~~~~~l~~~~~~yPl~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-l~~ll~~~~~~~a~~-~~ 781 (927)
......++...|-+++.++...++.++.+... ..+.+. ++.+ ....+.+++.+.|.+ +.
T Consensus 563 -------~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~~l~------~~~~~~~~~~~~~~~~~a~~~~l 623 (814)
T 3mkq_A 563 -------TYNLAHYTKEMYLLGYLARDNKVYLADREVHV------YGYEIS------LEVLEFQTLTLRGEIEEAIENVL 623 (814)
T ss_dssp -------EEEEEECSSCCEEEEEEGGGTEEEEECTTCCE------EEEECC------HHHHHHHHHHHTTCHHHHHHHTG
T ss_pred -------eEEEEECCccEEEEEEEecCCEEEEEcCCCCE------EEEEEC------cHHHHHhHHHHhCCHHHHHHHHH
Confidence 11222345567777777777777766643111 112211 1111 122445566666653 21
Q ss_pred HHcCCCCCchHHHHHHHHHhhhcccccccccccccCCc-ccccchhhHHHHHHHHHhcchhHHHHhhhcccccccchHHh
Q 002405 782 QLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIP-KRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADL 860 (927)
Q Consensus 782 ~~~~~l~~f~~~LE~lL~~vl~~e~~~~~~~~~~~~~~-~~~~~~~~l~~v~~~l~~~~~~l~ivv~c~RK~e~~~W~~l 860 (927)
+ .|+ . ..+.++++|++.. ++++...+.++..+
T Consensus 624 -----------------------------~-----~i~~~-----~~~~~~~~~l~~~-~~~~~a~~~~~~~~------- 656 (814)
T 3mkq_A 624 -----------------------------P-----NVEGK-----DSLTKIARFLEGQ-EYYEEALNISPDQD------- 656 (814)
T ss_dssp -----------------------------G-----GCCCH-----HHHHHHHHHHHHT-TCHHHHHHHCCCHH-------
T ss_pred -----------------------------h-----cCCch-----HHHHHHHHHHHhC-CChHHheecCCCcc-------
Confidence 0 133 2 5668899999887 77888777776544
Q ss_pred HhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhHh
Q 002405 861 FSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVS 924 (927)
Q Consensus 861 F~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~r 924 (927)
.-|+.+++.|+++.|..+..-+ .+++.|.+|-++|++.+++++|.+..+
T Consensus 657 --------~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 657 --------QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp --------HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4499999999999998886522 357899999999999999999998764
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.4e-34 Score=339.79 Aligned_cols=459 Identities=8% Similarity=0.070 Sum_probs=317.4
Q ss_pred CCceEEEEEecCeEEEEEccCeEEEeecCCce----eEEEEEeeChHhhhhccc-ccEEEEcC--CccEEEEEecCcEEE
Q 002405 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHK----VRLGKYKRDSESVQREGE-NLQAVWSP--DTKLIAVVTSSLYLH 92 (927)
Q Consensus 20 ~~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~----~~l~~~~r~~~sl~~~G~-~~~v~wsp--Dg~~Lav~t~dg~l~ 92 (927)
+....++|||||++||+++++.++||+.. .. .....+. .+.+. +.+++|+| |+++||+++.||.|+
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECC-SSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECC-CCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 34556899999999999999999999996 43 3333332 23466 88999999 999999999999999
Q ss_pred EEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeEEEEecCC--cEEEEecCCcccccee
Q 002405 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFE 168 (927)
Q Consensus 93 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg--~i~~~~w~~~~~~~~~ 168 (927)
+|++..+....... . ... ..+......|. ++++++..+++++.+. ...++.|+... ..
T Consensus 92 vw~~~~~~~~~~~~---------~----~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~- 153 (615)
T 1pgu_A 92 VWGWTFDKESNSVE---------V----NVK--SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SL- 153 (615)
T ss_dssp EEEEEEEGGGTEEE---------E----EEE--EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EE-
T ss_pred EEeCCCCccccccc---------c----ccc--chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC--cc-
Confidence 99997542100000 0 000 00111223343 4567778888888762 23444576221 11
Q ss_pred ecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeee
Q 002405 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEF 247 (927)
Q Consensus 169 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~ 247 (927)
..+..+...|.++.| +|+|+ .+++++.|+.+++|+.
T Consensus 154 ---------------------------------~~~~~~~~~v~~~~~----------~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 154 ---------------------------------GEVSGHSQRINACHL----------KQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp ---------------------------------EECCSCSSCEEEEEE----------CSSSSCEEEEEETTTEEEEEET
T ss_pred ---------------------------------eeeecCCccEEEEEE----------CCCCCcEEEEEeCCCcEEEEeC
Confidence 112345667777665 77887 7888999999999997
Q ss_pred ccccee---cCCCC---eE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEE-e---eecCCCCCCCCCCeeEEEE
Q 002405 248 IKIDKE---LGSGD---AV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTV-S---LYDWGYSMDDTGPVSCIAW 315 (927)
Q Consensus 248 ~~~~~~---~~h~~---~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l-~---~~~~~~~~~h~~~V~~l~~ 315 (927)
.+.+.. .+|.. .+ +++|+|+ +++|++|+.||.|++||+.+ ++.+..+ . . |.++|.+++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~--------~~~~v~~~~~ 261 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEP--------VQGGIFALSW 261 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBC--------CCSCEEEEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccc--------cCCceEEEEE
Confidence 765443 67888 88 9999999 99999999999999999987 7777666 4 4 9999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEEccCCeeEEEecccc---ccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEE
Q 002405 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 316 spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~---~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~ 389 (927)
+ ||++|++++.||.+++||+.++++..++..+. ...+.++.++ ++ ..+++++ .+.+|+..+++.+...
T Consensus 262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEE
Confidence 9 99999999999999999999998888887651 2455666664 44 5555554 8899999888887777
Q ss_pred cCCcceEEEEec-----------------------------------cceeeecccCCCeeeeeeeecC-----------
Q 002405 390 EGSSERVLIFSF-----------------------------------GKCCLNRGVSGMTYARQVIYGE----------- 423 (927)
Q Consensus 390 ~~~~~~v~~~~~-----------------------------------~~~~~s~s~d~~~~~w~~~~~~----------- 423 (927)
.+|...|..+.+ ++.+++++.|+.+++|++..+.
T Consensus 336 ~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s 415 (615)
T 1pgu_A 336 SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 415 (615)
T ss_dssp CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence 776655544443 6677777888888888775421
Q ss_pred -----------Ce-----------------------------EEEeecC-CCCcceEEEe--ecC-cccccCCCceEEEE
Q 002405 424 -----------DR-----------------------------LLVVQSE-DTDELKILHL--NLP-VSYISQNWPVQHVA 459 (927)
Q Consensus 424 -----------~~-----------------------------~~~~~~~-~~~~~~w~~~--~~~-~~~~~~~~~I~~va 459 (927)
.. .++..+. +.....|... +.. ..+.+|..+|.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 11 1111111 2222334311 111 45668999999999
Q ss_pred EccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee------------CCEEEEEEeecCCCeEEEEEe
Q 002405 460 ASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL------------GKIIVVCNYIDSSNTYELLFY 526 (927)
Q Consensus 460 ~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~------------~~~li~~~~~~~~~~~~l~l~ 526 (927)
|||||++||+|+.||.+ +||+.+++-..--...+ ...+..+.|. +.++++++ .+..+++|
T Consensus 496 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~-----~dg~i~iw 568 (615)
T 1pgu_A 496 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGS-----LDTNIFIY 568 (615)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEE-----TTSCEEEE
T ss_pred ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC--CCceeEEEEcCccccccccccCCCEEEEEc-----CCCcEEEE
Confidence 99999999999999999 99998876432111102 2347778884 45666652 33579999
Q ss_pred eCCCCCccceeEEE-ecCCc--cEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 527 PRYHLDQSSLLCRK-SLLAK--PIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 527 ~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+.+... ..+... .+... .+.+++.+. |++++.|+.+++|+++
T Consensus 569 ~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 569 SVKRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ESSCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred ECCCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 885221 122111 11222 356788888 9999999999999985
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.3e-35 Score=379.31 Aligned_cols=500 Identities=13% Similarity=0.103 Sum_probs=332.5
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
....++|||||+++|+++ |++|+||+.. .+..+..+. .+.+.+.+++|+|||++||+++.||.|++||+..+
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 345589999999999985 7899999996 555544443 24578899999999999999999999999998755
Q ss_pred CceeecCCCCCC----------------------CccceeeeEEeecccccccccceEEE--eeccCCeEEEEecCCcEE
Q 002405 100 EKSIQIGGKQPS----------------------GLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLY 155 (927)
Q Consensus 100 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~ 155 (927)
.....+.++... ...+|++.-. .....+.++...|.+ +++++..+++++.||.|+
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 433222222110 0112221000 000112233445554 467778999999999999
Q ss_pred EEecCCcccc-ceeecc--------cCCCCcccccccccCCCCCccccCC----------CceecccccCCCccEEEEEE
Q 002405 156 SISWKGEFYG-AFELVH--------SSNDSSVAALSHHFPSNGLASVDTS----------GAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 156 ~~~w~~~~~~-~~~~~~--------~~~~~~~i~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~i~~i~~ 216 (927)
+|+....... ...... .......+..+.+++++........ +.........+...+.++.|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 9776532211 000000 0000111222222222221100000 00000001122233333333
Q ss_pred cc--------------------------------CcceEEEEEeCCcEEEEeeecCccceeeecccce------------
Q 002405 217 CL--------------------------------PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------------ 252 (927)
Q Consensus 217 ~~--------------------------------~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~------------ 252 (927)
+| .....++++|||+.+++++.|+++++|+......
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 32 2234567789999999999999999998543100
Q ss_pred ----------------------------ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 253 ----------------------------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 253 ----------------------------~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
...+...+ +++|+|+++++|+|+.||.|++|++.+ +.....+.+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~------ 1001 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVG------ 1001 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCC------
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-Cceeeeccc------
Confidence 01123456 999999999999999999999999987 777777666
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCC
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEY 381 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~ 381 (927)
|.+.|++++|+|||++|++|+.||.|++||+.++.... +.+| ...+.++.++|++ ..+..+. ++.+|+..
T Consensus 1002 --h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~~~~~~~~~----~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1002 --HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH-QETVKDFRLLQDS----RLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp --CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCC-SSCEEEEEECSSS----EEEEEESSSEEEEEETT
T ss_pred --CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecC-CCcEEEEEEcCCC----cEEEEECCCcEEEEECC
Confidence 99999999999999999999999999999999887653 3445 7889999999976 4433322 89999999
Q ss_pred CceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE
Q 002405 382 GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 382 ~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
++++.....+|...| +++++ ++.+++++.|+++++|++..+.. ...+.+|..+|+++
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------------~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------------LHELKGHNGCVRCS 1133 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------------SBCCCCCSSCEEEE
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------------eeeeccCCCcEEEE
Confidence 999888888998888 55555 88999999999999999876543 55677899999999
Q ss_pred EEccCCCEEEEEeCCceE-EEEccCCcEEe-eCCcc-----ceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 459 AASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDIT-----QEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 459 a~spdG~~la~ag~dg~i-~wd~~s~~w~~-f~~~~-----~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
+|||||++||+|+.||.+ +||+.+++... +.... ......+.+++|. +.+++++. ..+++|+..
T Consensus 1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-------g~v~vwd~~ 1206 (1249)
T 3sfz_A 1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-------GYLKWWNVA 1206 (1249)
T ss_dssp EECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-------SSEEEBCSS
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-------CeEEEEECC
Confidence 999999999999999999 99998876321 10000 1111236678886 44565541 468999864
Q ss_pred CCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEE
Q 002405 530 HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~ 570 (927)
.-..-.....+.-+-..+.+++.+..|++++.||.+.+|++
T Consensus 1207 ~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1207 TGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred CCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 11100011111111234678899999999999999999975
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-33 Score=346.65 Aligned_cols=484 Identities=11% Similarity=0.034 Sum_probs=303.5
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
....++|+|||++||+++ |++|+||+.. ....+.. +.+.+.+.+++|+| |++||+++.|+.|++||+..+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~-------~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIK-------LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEE-------CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-------cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 466699999999999985 8899999985 3332221 12356789999999 889999999999999998643
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeEEEEecCCcEEEEecCCccccceee-------c
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL-------V 170 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~-------~ 170 (927)
.....+ . ..+.|+ ++.++++.+++|+.||.|++|+.+......+.+ .
T Consensus 90 ~~~~~~-----------------~-------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~ 145 (902)
T 2oaj_A 90 KVLTTV-----------------F-------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSF 145 (902)
T ss_dssp SEEEEE-----------------E-------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHT
T ss_pred cEEEEE-----------------c-------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccc
Confidence 211110 0 011333 456778899999999999998766433211111 1
Q ss_pred ccCCCCcccccccccCCC--CCccccCCCceecccccCCCccEEEEEEc------------------cCcceEEEEEeCC
Q 002405 171 HSSNDSSVAALSHHFPSN--GLASVDTSGAFVSDHKFPISSAIIWLELC------------------LPMRLLFVLYSNG 230 (927)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~i~~i~~~------------------~~~~~~~~~s~dG 230 (927)
....+...+..+.++++. .+++...++ .. +|.......+..+.+. ......++++|||
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg-~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg 223 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYV-TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSC-EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCC-cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence 112333445555555532 233333322 22 3322233333333222 1223556779999
Q ss_pred cEEEEeeecCccceeeecccceec--------C-------------CCCeE-EEEEc----CCC-cEEEEEecC-----C
Q 002405 231 QLMSCSVSKKGLKLAEFIKIDKEL--------G-------------SGDAV-CASIA----PEQ-QILAVGTRR-----G 278 (927)
Q Consensus 231 ~~~~~~~~d~~~~~w~~~~~~~~~--------~-------------h~~~v-~v~~s----p~~-~~la~g~~D-----g 278 (927)
+++++++.|+++++||..+++... + |...| +++|+ |++ .++++|+.| +
T Consensus 224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence 999999999999999987654321 1 34468 99995 543 567777665 2
Q ss_pred eEEEEeccC-----------------------------CC------------------------------cceEEEeeec
Q 002405 279 VVELYDLAE-----------------------------SA------------------------------SLIRTVSLYD 299 (927)
Q Consensus 279 ~V~vwd~~~-----------------------------~~------------------------------~~~~~l~~~~ 299 (927)
.+++|++.. .. ..++.+....
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 666776310 00 0001110000
Q ss_pred ----C----------------------------------------CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 300 ----W----------------------------------------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 300 ----~----------------------------------------~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
. ..-.+|...|.+++|+|||+.||+|+.|++|++||
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence 0 00013444555667789999999999999999999
Q ss_pred ccCCeeE----EE--ec-----cccccceecceecCCCCCCcccccccc---eeEEEcCCCc------------------
Q 002405 336 VSGCRLM----ST--IR-----QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY------------------ 383 (927)
Q Consensus 336 ~~~~~~~----~~--l~-----~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~------------------ 383 (927)
+.++++. .. +. +| ...|.+++|+|++ ..+++|+ ++++|+..++
T Consensus 464 ~~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspdg----~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 464 ASHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAET----LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp SSCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETTT----TEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred CCCccccCCceEEeechhhcCCCC-CCceeEEEecCCC----CeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 9876421 11 11 44 6789999999999 8888887 9999998754
Q ss_pred ---------------------------eEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCC
Q 002405 384 ---------------------------RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (927)
Q Consensus 384 ---------------------------~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~ 433 (927)
+++..+.+|.+.|.++.| | .+++|+.|+++++||+... .+ +..
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~--~~-~~~--- 611 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP--AI-IYM--- 611 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT--EE-EEE---
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC--eE-EEE---
Confidence 346777889999955554 7 9999999999999995321 11 110
Q ss_pred CCcceEEEeecCcccc-cCCCceEEEEEc-----cCC---CEEEEEeCCceE-EEEc---cCCcEE-eeCCcccee-eeE
Q 002405 434 TDELKILHLNLPVSYI-SQNWPVQHVAAS-----KDG---MFLAVAGLHGLI-LYDI---RQKKWR-VFGDITQEQ-KIQ 498 (927)
Q Consensus 434 ~~~~~w~~~~~~~~~~-~~~~~I~~va~s-----pdG---~~la~ag~dg~i-~wd~---~s~~w~-~f~~~~~e~-~~~ 498 (927)
.++ ..+. +|...|++++|| ||| ++||+|+.||++ +||+ .+|++. .|....+-+ .-.
T Consensus 612 --------~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~ 682 (902)
T 2oaj_A 612 --------ENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGP 682 (902)
T ss_dssp --------EEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCC
T ss_pred --------eeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCc
Confidence 011 3454 899999999999 886 899999999999 9999 777764 232211100 001
Q ss_pred EEEEE------------------ee------CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccE-------
Q 002405 499 SKGLL------------------WL------GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI------- 547 (927)
Q Consensus 499 v~~~~------------------W~------~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~------- 547 (927)
+..+. +. +..++++ ++.++|+|+... ...+++. +.....
T Consensus 683 v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~------~~~~ir~~~~~~---~k~~~k~-~~~~~~~~~v~~~ 752 (902)
T 2oaj_A 683 IHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT------GFDDIRLITLGK---SKSTHKG-FKYPLAATGLSYI 752 (902)
T ss_dssp CCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE------CSSEEEEECTTC---CCEEEEE-CSSCEEEEEEEEE
T ss_pred eEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE------eccceEEEeCcc---ccceeeE-cccceeeeEEEEE
Confidence 11111 11 2334444 246899997731 2233332 222111
Q ss_pred E------EEccCCEEEEEEcCCeEEEEEE
Q 002405 548 V------MDVYEDYILVTYRPFDVHIFHV 570 (927)
Q Consensus 548 ~------~~~~~~~l~v~~~d~~i~l~~~ 570 (927)
. ++..+..|+.++.||+|++|.+
T Consensus 753 ~~~~~~~~~~~~~~l~~~~~~g~i~~~s~ 781 (902)
T 2oaj_A 753 STVEKNNDRKNLTVIITLEINGHLRVFTI 781 (902)
T ss_dssp EEECSSSCEEEEEEEEEEETTSEEEEEET
T ss_pred EeccccccccCceEEEEEeCCCcEEEEEC
Confidence 1 2344567899999999999976
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8e-32 Score=300.85 Aligned_cols=318 Identities=12% Similarity=0.109 Sum_probs=207.8
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec------CcEEEEEEEEe
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS------SLYLHIFKVQI 98 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~------dg~l~i~~l~~ 98 (927)
+.+.+++.++.+.++.....|+.. +..+ ..+.+.+.+|+|||||++||+++. ||.+++|+...
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p-~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRP-VTAP----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred CCCCccceEEecCCCccccccCCC-CCCc----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 556677778777788889999984 3222 124577899999999999999998 67788887643
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEEEecCCcEEEEecCCccccceeecccCCCCc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~ 177 (927)
+....... ....+....|.+++..+ ..+++++.+|.|++|+.. ......
T Consensus 80 ~~~~~~~~-------------------~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~--~~~~~~--------- 129 (357)
T 4g56_B 80 GAPNESLC-------------------TAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEIL--EKESLL--------- 129 (357)
T ss_dssp ---CGGGC-------------------SEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----------C---------
T ss_pred CCcceeEe-------------------cccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecc--ccceeE---------
Confidence 32111000 00012233455554322 467888999999885433 221110
Q ss_pred ccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---c
Q 002405 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---L 254 (927)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~ 254 (927)
.......+|...|.++.| +|||+.+++++.|+++++||..+++.. .
T Consensus 130 ---------------------~~~~~~~~h~~~V~~v~~----------spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 130 ---------------------VNKFAKYEHDDIVKTLSV----------FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp ---------------------CCCEEECCCSSCEEEEEE----------CSSSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---------------------EEeeccCCCCCCEEEEEE----------CCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 000122356777877665 789999999999999999998876543 6
Q ss_pred CCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcE
Q 002405 255 GSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGL 331 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~Dg~v 331 (927)
+|...+ +++|+|++. ++++|+.||+|++||+.+ ++....+.. ..|...|++++|+|+ +++||+|+.|+.|
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~------~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDF------CASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCC------TTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeee------ccccccccchhhhhcccceEEEeecccce
Confidence 899999 999999875 899999999999999987 554443332 127788999999997 5689999999999
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccC
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d 411 (927)
++||+.++++..++.+| ...|++++|+|++ .+.+++++.|
T Consensus 252 ~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~---------------------------------------~~~lasgs~D 291 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVH-SQNITGLAYSYHS---------------------------------------SPFLASISED 291 (357)
T ss_dssp EEEESSCGGGCEEECCC-SSCEEEEEECSSS---------------------------------------SCCEEEEETT
T ss_pred eEEECCCCcEeEEEecc-ceeEEEEEEcCCC---------------------------------------CCEEEEEeCC
Confidence 99999998888888877 6667777777764 1234677788
Q ss_pred CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEcc-CCCEEEEEeCCceE-EEEccC
Q 002405 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~sp-dG~~la~ag~dg~i-~wd~~s 482 (927)
+++++|++..++ +....+|..+|++++||| ||++||+||.||.+ +|++.+
T Consensus 292 ~~i~iwd~~~~~---------------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 292 CTVAVLDADFSE---------------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SCEEEECTTSCE---------------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CEEEEEECCCCc---------------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 888888865332 123457999999999999 89999999999999 999865
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-31 Score=290.56 Aligned_cols=274 Identities=15% Similarity=0.169 Sum_probs=229.8
Q ss_pred ccccceEEEeec------cCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecc
Q 002405 129 AEKGLSVSNIVS------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (927)
Q Consensus 129 ~~~~~~v~~i~~------~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 202 (927)
.++...|.+++. +++.+++|+.||.|++|+++....... .
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------------~ 74 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------------W 74 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------------------------E
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------------------------e
Confidence 345566777654 245799999999999988764321100 1
Q ss_pred cccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCC
Q 002405 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg 278 (927)
.+.+|...|.++.+ ++++.++++++.|+++++||..+++.. .+|...+ +++|+|++++||+|+.||
T Consensus 75 ~l~gh~~~v~~~~~----------~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg 144 (321)
T 3ow8_A 75 SLEGHQLGVVSVDI----------SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144 (321)
T ss_dssp EECCCSSCEEEEEE----------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred eeccCCCCEEEEEE----------CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 23456677877664 788999999999999999998776543 5666777 999999999999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceeccee
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
+|++|++.+ +.....+.. |...|.+++|+|||++||+|+.||.|++||+.+++++.++.+| ...|.+++|
T Consensus 145 ~v~i~~~~~-~~~~~~~~~--------~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~ 214 (321)
T 3ow8_A 145 KVNIFGVES-GKKEYSLDT--------RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTF 214 (321)
T ss_dssp EEEEEETTT-CSEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEE
T ss_pred cEEEEEcCC-CceeEEecC--------CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEE
Confidence 999999987 667777777 8899999999999999999999999999999999999999988 788999999
Q ss_pred cCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
+|++ ..+++|+ ++++|+..++++...+.+|...|..+.+ ++.+++++.|+++++|++..+..
T Consensus 215 spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------- 282 (321)
T 3ow8_A 215 SPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-------- 282 (321)
T ss_dssp CTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------
T ss_pred cCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--------
Confidence 9998 7888876 8999999999999999999999865555 78999999999999999765432
Q ss_pred CCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
...+.+|..+|.+++|+|+|++|+++|.||.+ +||.
T Consensus 283 ------------~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 283 ------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ------------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 45677899999999999999999999999999 9996
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=2.4e-31 Score=295.00 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=185.7
Q ss_pred EEeCCcEEEEeeecCccceeeeccccee-------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~~~-------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
+++|+ .+++++.|+++++||..+++.. .+|.+.| +++|+|++++||+|+.||+|++||+.+ ++.+.++.+
T Consensus 90 ~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~~ 167 (344)
T 4gqb_B 90 WVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRA 167 (344)
T ss_dssp EETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC
T ss_pred EeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcC
Confidence 47776 4668899999999998766432 4899999 999999999999999999999999998 888888888
Q ss_pred ecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEccCCeeEEEeccc-cccceecceecCCCCCCcccccccc--
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
|++.|++++|+|++. .|++|+.|++|++||+.+++...++..+ +...+.+++|+|++. ..+++|+
T Consensus 168 --------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~l~sg~~d 236 (344)
T 4gqb_B 168 --------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS---EVFVFGDEN 236 (344)
T ss_dssp --------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT---TEEEEEETT
T ss_pred --------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC---cceEEeccC
Confidence 999999999999985 7899999999999999998888877542 245688999998651 5667665
Q ss_pred -eeEEEcCCCceEEEEEcCCcceEEEEec---c-ceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccc
Q 002405 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (927)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~-~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (927)
++++|+..+++++..+.+|...|..+.| + +.+++++.|+++++||+..++ ...+
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------------~~~~ 295 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------------LFRS 295 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------------EEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------------EEEE
Confidence 8999999999999999999999965554 4 468999999999999975432 2245
Q ss_pred ccCCCceEEEEEccCCC-EEEEEeCCceE-EEEccCC
Q 002405 449 ISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 449 ~~~~~~I~~va~spdG~-~la~ag~dg~i-~wd~~s~ 483 (927)
.+|..+|++++|||+|+ .||+||.||.+ +|++.+.
T Consensus 296 ~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 296 QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 68999999999999986 57799999999 9998764
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.98 E-value=1.7e-30 Score=296.02 Aligned_cols=276 Identities=13% Similarity=0.151 Sum_probs=231.2
Q ss_pred ccccceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC
Q 002405 129 AEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (927)
Q Consensus 129 ~~~~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (927)
.++...|+++ ++++..+++|+.||.|++|+++..... ..+.+
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~------------------------------------~~l~~ 148 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE------------------------------------RTLKG 148 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC------------------------------------EEECC
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------------------------------------EEEec
Confidence 3455566665 566788999999999999876532211 11235
Q ss_pred CCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEE
Q 002405 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVEL 282 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~v 282 (927)
|...|.++.| +|+|+++++++.|+++++||....+.. .+|...| +++|+|++++|++|+.||+|++
T Consensus 149 h~~~V~~v~~----------~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~ 218 (410)
T 1vyh_C 149 HTDSVQDISF----------DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218 (410)
T ss_dssp CSSCEEEEEE----------CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cCCcEEEEEE----------cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 6667877765 789999999999999999998766543 6899999 9999999999999999999999
Q ss_pred EeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
||+.+ +.++.++.+ |.+.|.+++|+|||.+|++|+.|++|++||+.++.+..++.+| ...|.+++|+|++
T Consensus 219 wd~~~-~~~~~~~~~--------h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 219 WEVQT-GYCVKTFTG--------HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPES 288 (410)
T ss_dssp EETTT-CCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSC
T ss_pred EECCC-CcEEEEEeC--------CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcc
Confidence 99988 788888888 9999999999999999999999999999999999999999888 7889999999974
Q ss_pred CC----------------Ccccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeee
Q 002405 363 DC----------------KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 363 ~~----------------~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~ 420 (927)
.. ....+++|+ ++++|+..+++++..+.+|...|..+.+ ++.+++++.|+++++|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 20 024577766 8999999999999999999998855544 7899999999999999986
Q ss_pred ecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
.+.. ...+.+|..+|++++|+|+|++||+||.||.+ +|++
T Consensus 369 ~~~~--------------------~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 369 NKRC--------------------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TSCC--------------------CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCce--------------------EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 5443 45677899999999999999999999999999 9986
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.98 E-value=2.1e-30 Score=287.27 Aligned_cols=279 Identities=15% Similarity=0.175 Sum_probs=211.7
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceE--EEeeccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~ 143 (927)
+.+.+.+++|+|||++|++++.||.|++|++..+....... .+...| .++++++.
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-----------------------~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-----------------------LRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----------------------CSSSCEEEEEECTTSS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-----------------------cCCccEEEEEECCCCC
Confidence 45788999999999999999999999999975433211111 111122 35677888
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+++++.||.+++|+......... ....+.+|...|.++.|
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~--------------------------------~~~~~~~h~~~v~~~~~------- 151 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVR--------------------------------VSRELAGHTGYLSCCRF------- 151 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCE--------------------------------EEEEEECCSSCEEEEEE-------
T ss_pred EEEEEeCCCeEEEEECccCCCcce--------------------------------eEEEecCCCccEEEEEE-------
Confidence 999999999999977653221100 00112345566666554
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+++++ +++++.|+++++||..+++.. .+|.+.+ +++|+|+++++++|+.||+|++||+.+ +....++.+
T Consensus 152 ---~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~-- 224 (340)
T 1got_B 152 ---LDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTG-- 224 (340)
T ss_dssp ---EETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECC--
T ss_pred ---CCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcC--
Confidence 67776 778899999999998776543 7899999 999999999999999999999999987 777888887
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecccc-ccceecceecCCCCCCcccccccceeEEE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~s~~~sp~~~~~~~~l~sg~~~~~W 378 (927)
|.++|++++|+|||++||+|+.||+|++||+..+....++..+. ...|.+++|+|+
T Consensus 225 ------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~----------------- 281 (340)
T 1got_B 225 ------HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS----------------- 281 (340)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----------------
T ss_pred ------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC-----------------
Confidence 99999999999999999999999999999998877665554210 122333333333
Q ss_pred cCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE
Q 002405 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
++.+++++.|+++++|++..+.. ...+.+|..+|.++
T Consensus 282 -----------------------g~~l~~g~~d~~i~vwd~~~~~~--------------------~~~~~~h~~~v~~~ 318 (340)
T 1got_B 282 -----------------------GRLLLAGYDDFNCNVWDALKADR--------------------AGVLAGHDNRVSCL 318 (340)
T ss_dssp -----------------------SSEEEEEETTSEEEEEETTTCCE--------------------EEEEECCSSCEEEE
T ss_pred -----------------------CCEEEEECCCCeEEEEEcccCcE--------------------eeEeecCCCcEEEE
Confidence 44557778888888888654432 34566899999999
Q ss_pred EEccCCCEEEEEeCCceE-EEE
Q 002405 459 AASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 459 a~spdG~~la~ag~dg~i-~wd 479 (927)
+|+|||++||+||.||.+ +||
T Consensus 319 ~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 319 GVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999 996
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=285.62 Aligned_cols=303 Identities=13% Similarity=0.084 Sum_probs=214.6
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCeEE
Q 002405 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHML 146 (927)
Q Consensus 69 ~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~ 146 (927)
.+.+++|+|||++||+++.||.|+||++..+..... .....++...|.+ +++++..++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------SVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------------EEECSSCSSCEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------------eeeccccCCcEEEEEECCCCCEEE
Confidence 778999999999999999999999999874321100 0001233334544 457788999
Q ss_pred EEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEE
Q 002405 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (927)
Q Consensus 147 v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (927)
+++.|+.+++|+.+....... ..+.+|...|.++.|
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~----------------------------------~~~~~h~~~v~~v~~---------- 113 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECV----------------------------------TTLEGHENEVKSVAW---------- 113 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEE----------------------------------EEECCCSSCEEEEEE----------
T ss_pred EEECCCcEEEEEccCCCeEEE----------------------------------EEccCCCCCceEEEE----------
Confidence 999999999876543211110 123456677877665
Q ss_pred EeCCcEEEEeeecCccceeeecccc------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc--ceEEEee
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVSL 297 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~--~~~~l~~ 297 (927)
+|||+++++++.|+++++|+..... ...+|...+ +++|+|++++||+|+.||+|++|+... +. +..++.+
T Consensus 114 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~ 192 (345)
T 3fm0_A 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEG 192 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECC
T ss_pred eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecC
Confidence 7899999999999999999986542 236899999 999999999999999999999999976 43 3456666
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEE
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQ 377 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~ 377 (927)
|.+.|++++|+|||++||+|+.|++|++|+..... . ...+.. . ...
T Consensus 193 --------h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~-------~-~~~~~~---------------~-~~~-- 238 (345)
T 3fm0_A 193 --------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-------N-EQGVAC---------------S-GSD-- 238 (345)
T ss_dssp --------CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT-------C-TTCCCC---------------C------
T ss_pred --------CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC-------C-Ccccee---------------e-ccC--
Confidence 99999999999999999999999999999974321 0 000000 0 000
Q ss_pred EcCCCceEEEEEcC-CcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 378 WDEYGYRLYAIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 378 W~~~~~~l~~~~~~-~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
...+++....+ |...|..+.+ +..+++++.|+++++|+....... ...... .......+|..
T Consensus 239 ---~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~---------~~~~~~--~~~~~~~~h~~ 304 (345)
T 3fm0_A 239 ---PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP---------QQPTFS--LTAHLHQAHSQ 304 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT---------TSCCEE--EEEEETTSSSS
T ss_pred ---CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc---------ceeeEE--EEeeecccccC
Confidence 01123344444 6777765555 778899999999999997643220 000000 00112357999
Q ss_pred ceEEEEEccCC-CEEEEEeCCceE-EEEccCCc
Q 002405 454 PVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 454 ~I~~va~spdG-~~la~ag~dg~i-~wd~~s~~ 484 (927)
+|++++|+|++ .+||+||.||.+ +|++.+++
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99999999998 599999999999 99998765
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=1.4e-30 Score=296.68 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=208.3
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGV 279 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~ 279 (927)
+.+|...|+++.| +|+|+++++++.|+++++||..+++. +.+|.+.| +++|+|++++||+|+.||+
T Consensus 104 l~gh~~~V~~~~~----------~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 104 LSGHRSPVTRVIF----------HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EECCSSCEEEEEE----------CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ecccCCcEEEEEE----------cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 3467777877765 78999999999999999999877643 37899999 9999999999999999999
Q ss_pred EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceec
Q 002405 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
|++||+.+ +.++.++.+ |.+.|.+++|+|+|.+|++|+.|++|++||+.++.++.++.+| ...|.++.++
T Consensus 174 i~iwd~~~-~~~~~~~~~--------h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~ 243 (410)
T 1vyh_C 174 IKLWDFQG-FECIRTMHG--------HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPN 243 (410)
T ss_dssp CCEEETTS-SCEEECCCC--------CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred EEEEeCCC-CceeEEEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEEC
Confidence 99999987 777777777 9999999999999999999999999999999999999999988 7889999999
Q ss_pred CCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-----------------------cceeeecccCCC
Q 002405 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-----------------------GKCCLNRGVSGM 413 (927)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-----------------------~~~~~s~s~d~~ 413 (927)
|++ ..+++|+ ++++|+..++++...+.+|...|.++.+ +..+++++.|++
T Consensus 244 ~~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 244 QDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp TTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred CCC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 998 7888776 8999999999998888999888865554 346899999999
Q ss_pred eeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+++|++..+.. ...+.+|..+|++++|+|+|++|++||.||.+ +||+.+++
T Consensus 320 i~iwd~~~~~~--------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 320 IKMWDVSTGMC--------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEEETTTTEE--------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred EEEEECCCCce--------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999765432 44567899999999999999999999999999 99987654
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=5.9e-30 Score=285.38 Aligned_cols=284 Identities=12% Similarity=0.103 Sum_probs=212.4
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeE
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (927)
+.+.+.+++|+||+++||+++.||+|++||............ ........++++++..+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~---------------------~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---------------------PCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------------SSSCCCEEEECTTSSEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec---------------------CCCCEEEEEECCCCCEE
Confidence 457789999999999999999999999999753322111110 11111224677888999
Q ss_pred EEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEE
Q 002405 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (927)
Q Consensus 146 ~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (927)
++++.|+.+.+|.+......... ........|...|.++.
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~------------------------------~~~~~~~~h~~~v~~~~---------- 161 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMA------------------------------AKKKSVAMHTNYLSACS---------- 161 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSG------------------------------GGCEEEEECSSCEEEEE----------
T ss_pred EEeeCCCCEEEEEEecccccccc------------------------------ccceeeeccCCcEEEEE----------
Confidence 99999999999876532211100 00011223555565554
Q ss_pred EEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcC--CCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp--~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
++++++.+++++.|+++++||..+++.. .+|...+ +++++| ++++|++|+.||+|++||+.+ +.++..+.+
T Consensus 162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~-- 238 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET-- 238 (354)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC--
T ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC--
Confidence 5789999999999999999998876543 6899988 999988 578999999999999999988 778888877
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecccc-ccceecceecCCCCCCcccccccceeEEE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~s~~~sp~~~~~~~~l~sg~~~~~W 378 (927)
|.+.|++++|+|+|..||+|+.|++|++||+..++....+..+. ...+++++|+|+
T Consensus 239 ------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------- 295 (354)
T 2pbi_B 239 ------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----------------- 295 (354)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----------------
T ss_pred ------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-----------------
Confidence 99999999999999999999999999999998876655543220 011222222222
Q ss_pred cCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE
Q 002405 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
++.+++++.|+++++|++..+.. ...+.+|..+|.++
T Consensus 296 -----------------------g~~l~~g~~d~~i~vwd~~~~~~--------------------~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 296 -----------------------GRLLFAGYNDYTINVWDVLKGSR--------------------VSILFGHENRVSTL 332 (354)
T ss_dssp -----------------------SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEE
T ss_pred -----------------------CCEEEEEECCCcEEEEECCCCce--------------------EEEEECCCCcEEEE
Confidence 45667888899999999765443 34566899999999
Q ss_pred EEccCCCEEEEEeCCceE-EEE
Q 002405 459 AASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 459 a~spdG~~la~ag~dg~i-~wd 479 (927)
+|||||++||+|+.||.+ +|+
T Consensus 333 ~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999 995
No 17
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.9e-30 Score=292.45 Aligned_cols=300 Identities=15% Similarity=0.176 Sum_probs=215.9
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeE
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (927)
+.+.+.+++|+|||++||+++.||+|++||+..+.....+..+.. ...-.++++++..+
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~---------------------~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP---------------------WVMECAFAPNGQSV 123 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT---------------------TCCCCEECTTSSEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC---------------------CEEEEEECCCCCEE
Confidence 458899999999999999999999999999764332222211111 01113567888999
Q ss_pred EEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEE
Q 002405 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (927)
Q Consensus 146 ~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (927)
++++.|+.+.+|++......... ......+.+|...+.++.|
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~~gh~~~v~~~~~--------- 165 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGN-----------------------------MPVSRVLTGHKGYASSCQY--------- 165 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCS-----------------------------STTCCBCCCCSSCCCCCBC---------
T ss_pred EEeeCCCcEEEEECCCCccccCC-----------------------------ccceeeccCCCcceEEEEE---------
Confidence 99999999999876532211100 0000122345556655554
Q ss_pred EEeC-CcEEEEeeecCccceeeeccccee--------cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEE
Q 002405 226 LYSN-GQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRT 294 (927)
Q Consensus 226 ~s~d-G~~~~~~~~d~~~~~w~~~~~~~~--------~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~ 294 (927)
.|+ +..+++++.|+++++||..+++.. .+|...+ +++|+| ++.++++|+.||+|++||+...+..+..
T Consensus 166 -~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 166 -VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp -CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred -ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 444 457889999999999998776543 5788888 999987 8999999999999999999854567788
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccce
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 374 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~ 374 (927)
+.+ |.+.|++++|+|||++|++|+.||+|++||+.++.++..+..+.... +. . ....+
T Consensus 245 ~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~--------~~----~--~~~v~ 302 (380)
T 3iz6_a 245 YHG--------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN--------DN----E--LPIVT 302 (380)
T ss_dssp ECC--------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS--------CC----S--SCSCS
T ss_pred ECC--------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc--------cc----c--cCceE
Confidence 887 99999999999999999999999999999999988877765431100 00 0 00011
Q ss_pred eEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 375 MMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
. +++++ ++.+++|+.|+.+++|+...++... .+.....+|..
T Consensus 303 ~---------------------~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----------------~~~~~~~~h~~ 345 (380)
T 3iz6_a 303 S---------------------VAFSISGRLLFAGYSNGDCYVWDTLLAEMVL----------------NLGTLQNSHEG 345 (380)
T ss_dssp E---------------------EEECSSSSEEEEECTTSCEEEEETTTCCEEE----------------EECCSCSSCCC
T ss_pred E---------------------EEECCCCCEEEEEECCCCEEEEECCCCceEE----------------EEecccCCCCC
Confidence 1 23333 5667788889999999865443210 01122357999
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+|++++|||||++||+||.||.+ +|++..++
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999999 99987653
No 18
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=3.3e-29 Score=326.04 Aligned_cols=424 Identities=15% Similarity=0.117 Sum_probs=304.6
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~ 143 (927)
+.+.+.+++|||||++||+++.||.|++|++..+...... .++.+.|. +++++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-----------------------~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-----------------------KAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-----------------------CCCSSCEEEEEECTTSS
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-----------------------ccCCCCEEEEEEecCCC
Confidence 4577889999999999999999999999998654322222 12233444 4566788
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+++++.||.|.+|++.... .. ..+..|...|.++.|++.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~--~~----------------------------------~~~~~~~~~v~~~~~~~~---- 710 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGK--LV----------------------------------HTYDEHSEQVNCCHFTNK---- 710 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCC--EE----------------------------------EEEECCSSCEEEEEECSS----
T ss_pred EEEEEeCCCeEEEEECCCCc--eE----------------------------------EEEcCCCCcEEEEEEecC----
Confidence 99999999999997765321 11 112345667777776431
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
.++.++++++.|+++++||..+++.. .+|.+.+ +++|+|+++++|+|+.||+|++||+.+ +.....+....
T Consensus 711 ----~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~ 785 (1249)
T 3sfz_A 711 ----SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKR 785 (1249)
T ss_dssp ----SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEECCC
T ss_pred ----CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-Ccccceecccc
Confidence 15668889999999999998876543 6899999 999999999999999999999999987 65555554321
Q ss_pred CC-----CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-
Q 002405 300 WG-----YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (927)
Q Consensus 300 ~~-----~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (927)
.. ....+...|.+++|+|||+.+++++ ++.+.+|++.++.....+...+...+.+++|+|++ ..++++.
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~ 860 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIALS 860 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST----TEEEEECS
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEEeC
Confidence 11 1112455799999999999999988 58999999998888887775448899999999998 7777665
Q ss_pred --eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecC-------------------------
Q 002405 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE------------------------- 423 (927)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~------------------------- 423 (927)
++.+|+..+++......+|...|..+.+ ++.+++++.|+++++|++....
T Consensus 861 dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1249)
T 3sfz_A 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940 (1249)
T ss_dssp SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEe
Confidence 8999999999999999999999966555 7899999999999999854210
Q ss_pred --------------------------------CeEEEeecCCCCcceEEE--eecCcccccCCCceEEEEEccCCCEEEE
Q 002405 424 --------------------------------DRLLVVQSEDTDELKILH--LNLPVSYISQNWPVQHVAASKDGMFLAV 469 (927)
Q Consensus 424 --------------------------------~~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~I~~va~spdG~~la~ 469 (927)
.+.+++.+.+.....|.. .+....+.+|..+|++++|+|||+++++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp ESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred cCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence 000111111111122321 1122345689999999999999999999
Q ss_pred EeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCC-EEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccE
Q 002405 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI 547 (927)
Q Consensus 470 ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~-~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~ 547 (927)
++.||.+ +||+.+++...+.. + .-.+..+.|.++ .+++++ .+..+++|+.........+..+.-+-..+
T Consensus 1021 ~~~dg~i~vwd~~~~~~~~~~~--~--~~~v~~~~~~~~~~l~~~~-----~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYVFLQA--H--QETVKDFRLLQDSRLLSWS-----FDGTVKVWNVITGRIERDFTCHQGTVLSC 1091 (1249)
T ss_dssp ECSSSBEEEEETTTTEEECCBC--C--SSCEEEEEECSSSEEEEEE-----SSSEEEEEETTTTCCCEEEECCSSCCCCE
T ss_pred EcCCCEEEEEECCCCceEEEec--C--CCcEEEEEEcCCCcEEEEE-----CCCcEEEEECCCCceeEEEcccCCcEEEE
Confidence 9999999 99999987653321 1 123667777654 444442 33579999874211111111121222346
Q ss_pred EEEccCCEEEEEEcCCeEEEEEEE
Q 002405 548 VMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 548 ~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
.+++.+..+++++.|+++++|++.
T Consensus 1092 ~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp EECSSSSSCEEECCSSCCCEECSS
T ss_pred EECCCCCEEEEEcCCCcEEEEECC
Confidence 788999999999999999999764
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=9.8e-30 Score=277.20 Aligned_cols=277 Identities=14% Similarity=0.132 Sum_probs=220.6
Q ss_pred cccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCC
Q 002405 130 EKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (927)
Q Consensus 130 ~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (927)
++...|.+ +++++..+++++.||.|++|+.+... .. ..+..+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~----------------------------------~~~~~~ 54 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EV----------------------------------RSIQVT 54 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EE----------------------------------EEEECC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--ee----------------------------------EEeecc
Confidence 34445554 56778899999999999997654321 11 011234
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEE
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vw 283 (927)
...|.++. +++||+.+++++.|+++++||..+++.. .+|.+.| +++|+|++++||+|+.||+|++|
T Consensus 55 ~~~v~~~~----------~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 55 ETPVRAGK----------FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (304)
T ss_dssp SSCEEEEE----------EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CCcEEEEE----------EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 44565554 5899999999999999999998876543 7899999 99999999999999999999999
Q ss_pred eccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
|+.+.......+.+ |.+.|.+++|+| |+..||+|+.|++|++||+..+.....+..++...+..+.++|..
T Consensus 125 d~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 125 NWENNWALEQTFEG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196 (304)
T ss_dssp EGGGTTEEEEEECC--------CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST
T ss_pred ECCCCcchhhhhcc--------cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC
Confidence 99873345566777 999999999999 689999999999999999987766666665546778888888743
Q ss_pred CCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEe--c-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCc
Q 002405 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE 436 (927)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~ 436 (927)
+...+++|+ ++++|+..+++++..+.+|...|..+. + ++.+++++.|+++++|+...+..
T Consensus 197 --~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~------------ 262 (304)
T 2ynn_A 197 --DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV------------ 262 (304)
T ss_dssp --TCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE------------
T ss_pred --CCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce------------
Confidence 115677776 899999999999999999999885544 4 77899999999999999765443
Q ss_pred ceEEEeecCcccccCCCceEEEEEccCCC--EEEEEeCCceEEEEccC
Q 002405 437 LKILHLNLPVSYISQNWPVQHVAASKDGM--FLAVAGLHGLILYDIRQ 482 (927)
Q Consensus 437 ~~w~~~~~~~~~~~~~~~I~~va~spdG~--~la~ag~dg~i~wd~~s 482 (927)
...+..|...+.+++++|+|+ ++|+|+.+|.++|++..
T Consensus 263 --------~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 263 --------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp --------EEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred --------eeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 345567888999999999885 69999999998998754
No 20
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-29 Score=311.63 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=159.4
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe--eccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~ 143 (927)
+.+.+.+++|+|||++||+|+.||.|++|+......... ..+...|.++ ++ ++
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~------------------------~~~~~~V~~l~fsp-g~ 70 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK------------------------LEDRSAIKEMRFVK-GI 70 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE------------------------CSSCCCEEEEEEET-TT
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE------------------------cCCCCCEEEEEEcC-CC
Confidence 356789999999999999999999999998542110000 0012234444 45 56
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.|++++.|+.|++|+.+... ... . ..+...|.++.
T Consensus 71 ~L~S~s~D~~v~lWd~~~~~--~~~---------------------------------~--~~~~~~V~~v~-------- 105 (902)
T 2oaj_A 71 YLVVINAKDTVYVLSLYSQK--VLT---------------------------------T--VFVPGKITSID-------- 105 (902)
T ss_dssp EEEEEETTCEEEEEETTTCS--EEE---------------------------------E--EECSSCEEEEE--------
T ss_pred EEEEEECcCeEEEEECCCCc--EEE---------------------------------E--EcCCCCEEEEE--------
Confidence 79999999999997765321 110 0 01234566655
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce--------------ecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccC
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--------------ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--------------~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~ 287 (927)
++|||+++++++.|+++++||....+. ..+|...| +++|+|+ +..+++|+.||+| +||+.+
T Consensus 106 --~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~ 182 (902)
T 2oaj_A 106 --TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE 182 (902)
T ss_dssp --CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred --ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC
Confidence 478999999999999999999765432 25788899 9999996 5799999999999 999987
Q ss_pred CCcceEEEeeecCC----------CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE--ec---cc----
Q 002405 288 SASLIRTVSLYDWG----------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST--IR---QI---- 348 (927)
Q Consensus 288 ~~~~~~~l~~~~~~----------~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~--l~---~~---- 348 (927)
++.++.+.....+ ....|.+.|++++|+|||++||+|+.||+|++||+.+++++.. +. .|
T Consensus 183 -~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 183 -NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP 261 (902)
T ss_dssp -TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT
T ss_pred -CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC
Confidence 7677666542000 0123568899999999999999999999999999988776653 31 12
Q ss_pred --------cccceecceecCC
Q 002405 349 --------SLSSISSPIVKPN 361 (927)
Q Consensus 349 --------~~~~v~s~~~sp~ 361 (927)
+...|.+++|++.
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEEC
T ss_pred cCCCCCccccCCeeEEEEEec
Confidence 1346888888643
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=6.1e-29 Score=272.91 Aligned_cols=288 Identities=14% Similarity=0.132 Sum_probs=216.4
Q ss_pred hcccccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccC
Q 002405 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN 142 (927)
Q Consensus 66 ~~G~~~~v~wspDg-~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~ 142 (927)
+.+.+.+++|+|++ ++|++++.||+|++|++......... ++ ..+.++...|. ++.+++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------~~----------~~~~~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------PV----------RSFKGHSHIVQDCTLTADG 77 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------EE----------EEEECCSSCEEEEEECTTS
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------cc----------eEEeCCcccEEEEEECCCC
Confidence 56788999999975 89999999999999999754321100 00 01223333444 456778
Q ss_pred CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcce
Q 002405 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (927)
Q Consensus 143 ~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (927)
..+++++.||.|++|+.... ... ..+.+|...|.++.|
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~--~~~----------------------------------~~~~~h~~~v~~~~~------ 115 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATG--ETY----------------------------------QRFVGHKSDVMSVDI------ 115 (319)
T ss_dssp SEEEEEETTSEEEEEETTTT--EEE----------------------------------EEEECCSSCEEEEEE------
T ss_pred CEEEEEeCCCEEEEEECCCC--Cee----------------------------------EEEccCCCcEEEEEE------
Confidence 89999999999999765422 111 112356667777664
Q ss_pred EEEEEeCCcEEEEeeecCccceeeecccc--eecCCCCeE-EEEEcCC------CcEEEEEecCCeEEEEeccCCCcceE
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPE------QQILAVGTRRGVVELYDLAESASLIR 293 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--~~~~h~~~v-~v~~sp~------~~~la~g~~Dg~V~vwd~~~~~~~~~ 293 (927)
+|+|+.+++++.|+++++|+..... ...+|.+.+ +++++|. +..+++|+.||+|++||+.+ .....
T Consensus 116 ----~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~ 190 (319)
T 3frx_A 116 ----DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA 190 (319)
T ss_dssp ----CTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE
T ss_pred ----cCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe
Confidence 7899999999999999999975432 237899999 9999995 45899999999999999987 66677
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
.+.+ |.++|++++|+|||++||+|+.||+|++||+.+++++.++..+ ..|.+++|+|++ ..++++.
T Consensus 191 ~~~~--------h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~la~~~ 256 (319)
T 3frx_A 191 DFIG--------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNR----YWLAAAT 256 (319)
T ss_dssp EECC--------CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSS----SEEEEEE
T ss_pred eecC--------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCC----CEEEEEc
Confidence 7777 9999999999999999999999999999999999988888764 579999999987 5555443
Q ss_pred --eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC
Q 002405 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (927)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (927)
.+++|+.+...++.....+ .......|
T Consensus 257 ~~~i~v~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~ 285 (319)
T 3frx_A 257 ATGIKVFSLDPQYLVDDLRPE---------------------------------------------------FAGYSKAA 285 (319)
T ss_dssp TTEEEEEEETTEEEEEEECCC---------------------------------------------------CTTCCGGG
T ss_pred CCCcEEEEeCcCeeeeccCcc---------------------------------------------------ccccccCc
Confidence 5566665544332222110 01112245
Q ss_pred CCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 452 ~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
...+.+++|||||++|++|+.||.+ +||+.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6678999999999999999999999 9998764
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=276.11 Aligned_cols=275 Identities=17% Similarity=0.151 Sum_probs=226.1
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce-----ecCCCCeE-EEEEcCCCcEEEEEecCC
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~-----~~~h~~~v-~v~~sp~~~~la~g~~Dg 278 (927)
.+|...|.+++|++.. .+++.++++++.|+++++|+...... ..+|...| +++|+|++.++|+|+.||
T Consensus 29 ~~H~~~V~~v~~~~~~------~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK------KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp TSSSSCEEEEEEC-------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ccCCCcEEEEEEecCC------CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 4688899998885532 24688999999999999999765432 37899999 999999999999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceeccee
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
+|++||+.+ ++.+..+.. |...+.+++|+|||++||+|+.||.+++|++.+++...++..+ ...+.+++|
T Consensus 103 ~i~lWd~~~-~~~~~~~~~--------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~ 172 (321)
T 3ow8_A 103 HIRLWDLEN-GKQIKSIDA--------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAY 172 (321)
T ss_dssp EEEEEETTT-TEEEEEEEC--------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEE
T ss_pred cEEEEECCC-CCEEEEEeC--------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEE
Confidence 999999988 777788877 8889999999999999999999999999999998888888877 678999999
Q ss_pred cCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEE--EEec-cceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
+|++ ..+++|+ ++++|+..+++++..+.+|...|. ++++ ++.+++++.|+++++|++..+..
T Consensus 173 spdg----~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-------- 240 (321)
T 3ow8_A 173 SPDG----KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-------- 240 (321)
T ss_dssp CTTS----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE--------
T ss_pred CCCC----CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce--------
Confidence 9998 8888876 899999999999999999988884 4555 88999999999999999765432
Q ss_pred CCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeCCccceeeeEEEEEEee--CCE
Q 002405 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKI 508 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~v~~~~W~--~~~ 508 (927)
...+.+|..+|.+++|+|+|++|++|+.||.+ +||+.+++.. .+.. +. -.+.++.|. +..
T Consensus 241 ------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~--~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 241 ------------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQ--DQVWGVKYNGNGSK 304 (321)
T ss_dssp ------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CS--SCEEEEEECTTSSE
T ss_pred ------------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CC--CcEEEEEECCCCCE
Confidence 34567899999999999999999999999999 9999887643 2322 11 236788886 446
Q ss_pred EEEEEeecCCCeEEEEEeeC
Q 002405 509 IVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 509 li~~~~~~~~~~~~l~l~~~ 528 (927)
+++++ .+..+++|+.
T Consensus 305 l~s~~-----~d~~i~vwd~ 319 (321)
T 3ow8_A 305 IVSVG-----DDQEIHIYDC 319 (321)
T ss_dssp EEEEE-----TTCCEEEEEC
T ss_pred EEEEe-----CCCeEEEEeC
Confidence 66662 3457888864
No 23
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=6.6e-29 Score=297.62 Aligned_cols=415 Identities=12% Similarity=0.062 Sum_probs=285.5
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEec----CceeecCCCCCCCccceeeeEEeecccccccccce-EEE--e
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT----EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-VSN--I 138 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~--i 138 (927)
+.+.+.+++|+|||+.||+++ ++.+++|++..+ ..... +.++... |++ +
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-----------------------~~~h~~~~v~~~~~ 72 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ-----------------------FTGHGSSVVTTVKF 72 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE-----------------------ECTTTTSCEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE-----------------------EecCCCceEEEEEE
Confidence 457889999999999999998 789999998744 21111 1222334 444 4
Q ss_pred ec--cCCeEEEEecCCcEEEEecCCccc-cceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEE
Q 002405 139 VS--DNKHMLLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (927)
Q Consensus 139 ~~--~~~~l~v~~~dg~i~~~~w~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (927)
++ +++.+++++.||.|++|+.+.... ..... .....+..+...|.++.
T Consensus 73 sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~v~~~~ 123 (615)
T 1pgu_A 73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-----------------------------NVKSEFQVLAGPISDIS 123 (615)
T ss_dssp CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-----------------------------EEEEEEECCSSCEEEEE
T ss_pred CcCCCCCEEEEecCCCEEEEEeCCCCcccccccc-----------------------------cccchhhcccccEEEEE
Confidence 66 778899999999999977642110 00000 00011223455676666
Q ss_pred EccCcceEEEEEeCCcEEEEeeec----Cccceeeeccc-ceecCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCC
Q 002405 216 LCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEFIKI-DKELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAES 288 (927)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d----~~~~~w~~~~~-~~~~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~ 288 (927)
| +|||+.+++++.+ +.+.+|+.... ....+|...+ +++|+|+++ ++++|+.||+|++||+.+
T Consensus 124 ~----------s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~- 192 (615)
T 1pgu_A 124 W----------DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP- 192 (615)
T ss_dssp E----------CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-
T ss_pred E----------eCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-
Confidence 5 7888888888876 57888884322 1237899999 999999998 899999999999999987
Q ss_pred CcceEEEeeecCCCCCCCCC---CeeEEEECCC-CCEEEEEEcCCcEEEEEccCCeeEEEe-c---cccccceecceecC
Q 002405 289 ASLIRTVSLYDWGYSMDDTG---PVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI-R---QISLSSISSPIVKP 360 (927)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~---~V~~l~~spd-g~~Lasg~~Dg~v~vW~~~~~~~~~~l-~---~~~~~~v~s~~~sp 360 (927)
++.+..+.. |.+ +|++++|+|| |++|++|+.||.|++||+.+++.+..+ . .| ...|.++.|+
T Consensus 193 ~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~- 262 (615)
T 1pgu_A 193 FKFSASDRT--------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL- 262 (615)
T ss_dssp BEEEEEECS--------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES-
T ss_pred cceeeeecc--------cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc-
Confidence 777777877 888 9999999999 999999999999999999999999888 4 55 7889999999
Q ss_pred CCCCCcccccccc---eeEEEcCCCceEEEEEcCC----cceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeec
Q 002405 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS----SERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (927)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~----~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~ 431 (927)
++ ..+++++ ++++|+..+++.......+ ...+..+.+ ++.+++++.|+.+++|++..+.. +....+
T Consensus 263 ~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-~~~~~~ 337 (615)
T 1pgu_A 263 DS----QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-LKTISG 337 (615)
T ss_dssp SS----SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE-EEEECC
T ss_pred CC----CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE-EEEEeC
Confidence 76 6777665 8999999999888887765 244444433 88899999999999999764321 111111
Q ss_pred -----------------CC------------------------------------CCcceEEEee---------------
Q 002405 432 -----------------ED------------------------------------TDELKILHLN--------------- 443 (927)
Q Consensus 432 -----------------~~------------------------------------~~~~~w~~~~--------------- 443 (927)
.+ .....|....
T Consensus 338 ~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~ 417 (615)
T 1pgu_A 338 HNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND 417 (615)
T ss_dssp CSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred CCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence 00 0001121100
Q ss_pred --------------------cCcccccCCCceEEEEEccCCCEEEEEeC-CceE-EEEccCCcEEeeCCccceeeeEEEE
Q 002405 444 --------------------LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (927)
Q Consensus 444 --------------------~~~~~~~~~~~I~~va~spdG~~la~ag~-dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~ 501 (927)
.+.....|..++.+++|+ |+++++++. ||.+ +||+.+++...... ......+..
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~--~~~~~~v~~ 493 (615)
T 1pgu_A 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLK--TPLRAKPSY 493 (615)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECS--SCCSSCEEE
T ss_pred CCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccccc--CCccCceEE
Confidence 000111355677777777 788888888 8888 88887765532111 111234667
Q ss_pred EEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEe--cCC--ccEEEEc----------cCCEEEEEEcCCeE
Q 002405 502 LLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS--LLA--KPIVMDV----------YEDYILVTYRPFDV 565 (927)
Q Consensus 502 ~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~--~~~--~~~~~~~----------~~~~l~v~~~d~~i 565 (927)
++|. +.++++++ .+..+++|+... ...+.... ... ..+.+++ .+..|++++.|+.|
T Consensus 494 ~~~s~~g~~l~~~~-----~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i 565 (615)
T 1pgu_A 494 ISISPSETYIAAGD-----VMGKILLYDLQS---REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 565 (615)
T ss_dssp EEECTTSSEEEEEE-----TTSCEEEEETTT---TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred EEECCCCCEEEEcC-----CCCeEEEeeCCC---CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcE
Confidence 7884 56777663 335699998741 11221111 222 2356778 88899999999999
Q ss_pred EEEEEE
Q 002405 566 HIFHVK 571 (927)
Q Consensus 566 ~l~~~~ 571 (927)
++|++.
T Consensus 566 ~iw~~~ 571 (615)
T 1pgu_A 566 FIYSVK 571 (615)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999874
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=276.42 Aligned_cols=284 Identities=14% Similarity=0.151 Sum_probs=209.9
Q ss_pred ccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCC
Q 002405 129 AEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (927)
Q Consensus 129 ~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 208 (927)
.++...|.+++.+++.+++++.||.|++|+.......... ......|.
T Consensus 11 ~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~--------------------------------~~~~~~h~ 58 (330)
T 2hes_X 11 KLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID--------------------------------VLDETAHK 58 (330)
T ss_dssp ECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE--------------------------------EECTTCCC
T ss_pred ccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE--------------------------------EEecCCcc
Confidence 4556678888877788999999999999766432111100 00012266
Q ss_pred ccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc----------ceecCCCCeE-EEEEcCCCcEEEEEecC
Q 002405 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----------DKELGSGDAV-CASIAPEQQILAVGTRR 277 (927)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~----------~~~~~h~~~v-~v~~sp~~~~la~g~~D 277 (927)
..|.++.| +|+|+++++++.|+++++|+.... ..+.+|.+.| +++|+|++++||+|+.|
T Consensus 59 ~~v~~v~~----------sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D 128 (330)
T 2hes_X 59 KAIRSVAW----------RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128 (330)
T ss_dssp SCEEEEEE----------CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT
T ss_pred CCEEEEEE----------CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 67877765 788999999999999999987421 1236899999 99999999999999999
Q ss_pred CeEEEEeccCCC---cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC--eeEEEeccccccc
Q 002405 278 GVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSS 352 (927)
Q Consensus 278 g~V~vwd~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~ 352 (927)
|+|++||+...+ +++..+.+ |.+.|++++|+|||.+||+|+.|++|++|+..++ .++.++.+| ...
T Consensus 129 ~~v~iwd~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~ 199 (330)
T 2hes_X 129 KSVWIWETDESGEEYECISVLQE--------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGT 199 (330)
T ss_dssp SCEEEEECCTTCCCCEEEEEECC--------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSC
T ss_pred CEEEEEeccCCCCCeEEEEEecc--------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCc
Confidence 999999995422 34556666 9999999999999999999999999999999765 577888888 788
Q ss_pred eecceecCCCCCCcccccccc---eeEEEcCCCc--------eEEEEEcC-CcceEEEEec--cceeeecccCCCeeeee
Q 002405 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------RLYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYARQ 418 (927)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--------~l~~~~~~-~~~~v~~~~~--~~~~~s~s~d~~~~~w~ 418 (927)
|.+++|+|++ ....+++|+ ++++|+..+. .+.....+ |...|..+.+ +..+++++.|+++++|+
T Consensus 200 v~~~~~~~~~--~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 200 VWSSDFDKTE--GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEEECCSS--SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred EEEEEecCCC--CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEE
Confidence 9999999983 115677765 8999998654 34444444 8888866666 66899999999999999
Q ss_pred eeecCCeEEEeecCCCCcceEEEeecCcccccCCC-ceEEEEEcc--CCCEEEEEeCCceE-EEEccC
Q 002405 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASK--DGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~I~~va~sp--dG~~la~ag~dg~i-~wd~~s 482 (927)
...+..+. ......+|.. .|.+++|+| +|++||+||.||.+ +|++.+
T Consensus 278 ~~~~~~~~-----------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKV-----------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEE-----------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEE-----------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 76432111 0112346776 899999999 79999999999999 999864
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.3e-29 Score=282.67 Aligned_cols=340 Identities=13% Similarity=0.117 Sum_probs=244.6
Q ss_pred hcccccEEEEcCCcc-EEEEEecCcEEEEEEE----EecCceeecCCCCCCCccceeeeEEeeccc------ccccccce
Q 002405 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKV----QITEKSIQIGGKQPSGLFFIKISLVLNEQL------PFAEKGLS 134 (927)
Q Consensus 66 ~~G~~~~v~wspDg~-~Lav~t~dg~l~i~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 134 (927)
+.+.+.+++|+|||+ +||+++.||.|++|++ ..+.. +|.+........ ...++...
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK-------------YWKLTIIAELRHPFALSASSGKTTNQ 110 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------------------CEEEEEEEEEECCCCCC------CBC
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc-------------cccccccccccccccccccccCCCCc
Confidence 347889999999999 9999999999999999 54431 011100000000 01112334
Q ss_pred EEE--eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEE
Q 002405 135 VSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (927)
Q Consensus 135 v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 212 (927)
|++ ++++++.+++++.+|.|++|+.++.. . ..+..+...|.
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---~----------------------------------~~~~~~~~~v~ 153 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGAL---L----------------------------------NVLNFHRAPIV 153 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCE---E----------------------------------EEECCCCSCEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---e----------------------------------eeccCCCccEE
Confidence 554 45677899999999999987622211 1 11234556677
Q ss_pred EEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCe---------------E-EEEEcCCCcEEEE
Q 002405 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA---------------V-CASIAPEQQILAV 273 (927)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~---------------v-~v~~sp~~~~la~ 273 (927)
++.| +|+|+.+++++.|+.+++|+..+++.. ..+... + +++|+|++ .+++
T Consensus 154 ~~~~----------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 222 (425)
T 1r5m_A 154 SVKW----------NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVI 222 (425)
T ss_dssp EEEE----------CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEE
T ss_pred EEEE----------CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEE
Confidence 7665 788898999999999999998765433 334443 6 89999986 4888
Q ss_pred EecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccce
Q 002405 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (927)
Q Consensus 274 g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (927)
|+.||.|++||+.+ +..+..+.. |.++|.+++|+|+|++|++++.||.|++||+..++....+.+| ...+
T Consensus 223 ~~~~g~i~~~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i 292 (425)
T 1r5m_A 223 PGPKGAIFVYQITE-KTPTGKLIG--------HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSI 292 (425)
T ss_dssp ECGGGCEEEEETTC-SSCSEEECC--------CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCE
T ss_pred EcCCCeEEEEEcCC-Cceeeeecc--------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccE
Confidence 99999999999987 777777777 9999999999999999999999999999999998888888877 7889
Q ss_pred ecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEE
Q 002405 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLL 427 (927)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~ 427 (927)
.++.|+|++ .+++++ .+.+|+..+++++.....|...+..+.+ ++.+++++.|+.+++|++..+.....
T Consensus 293 ~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 293 VSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred EEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 999999986 344443 8999999999999988888888855554 78999999999999999876542110
Q ss_pred EeecCCCCcceEEEeecCcccccCCC--ceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 428 VVQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~--~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
...+.......-...+....+.+|.. +|.+++|+|+|++||+|+.||.+ +|++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 00000000000001112345567765 99999999999999999999999 99975
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=1.1e-29 Score=289.59 Aligned_cols=329 Identities=14% Similarity=0.108 Sum_probs=243.8
Q ss_pred ccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEe
Q 002405 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (927)
Q Consensus 70 ~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~ 149 (927)
..+++|+|||++|++++.||.+++|++.......... ......+..+.++++.+++++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK----------------------RADYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC----------------------SCCEEEEEEECSSSCEEEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe----------------------cCCceEEEEEecCCCEEEEEE
Confidence 4579999999999999999999999986432211110 001112335567888999999
Q ss_pred cCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeC
Q 002405 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (927)
Q Consensus 150 ~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d 229 (927)
.||.|++|+.+.. ... .....|...|.++.| +||
T Consensus 117 ~dg~i~iwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~~----------~~~ 150 (420)
T 3vl1_A 117 TEGDIKVLDSNFN--LQR----------------------------------EIDQAHVSEITKLKF----------FPS 150 (420)
T ss_dssp TTSCEEEECTTSC--EEE----------------------------------EETTSSSSCEEEEEE----------CTT
T ss_pred CCCCEEEEeCCCc--cee----------------------------------eecccccCccEEEEE----------CCC
Confidence 9999998754421 111 112356677888765 788
Q ss_pred CcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC----
Q 002405 230 GQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG---- 301 (927)
Q Consensus 230 G~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~---- 301 (927)
|+.+++++.|+++++||..+++. +.+|...+ +++|+|++++|++|+.||+|++||+.+ ++.+..+......
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCCCCCCCc
Confidence 99999999999999999876543 36899999 999999999999999999999999987 6666666542110
Q ss_pred ------------CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcc-c
Q 002405 302 ------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-P 368 (927)
Q Consensus 302 ------------~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~-~ 368 (927)
....|..+|.+++|+|||++|++|+.||.|++||+.+++....+..++...+.+++|+|++ . .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 305 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN----ANY 305 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC----TTE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC----CCE
Confidence 0001345566677789999999999999999999998888777766557889999999998 5 6
Q ss_pred ccccc---eeEEEcCCCce-EEEEEcC-CcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEE
Q 002405 369 LMSGT---SMMQWDEYGYR-LYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (927)
Q Consensus 369 l~sg~---~~~~W~~~~~~-l~~~~~~-~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (927)
+++|+ .+++|+..+++ ++....+ |...+..+.+ ++.+++++.|+++++|++........+ ..
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----------~~ 374 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-----------IE 374 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----------EC
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----------ee
Confidence 77765 89999998763 3444444 5556644433 889999999999999998764321000 00
Q ss_pred eecCcccccCCCceEEEEEccCCC---EEEEEeCCceE-EEEccC
Q 002405 442 LNLPVSYISQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~spdG~---~la~ag~dg~i-~wd~~s 482 (927)
...+..+.+|...|.+++|+|||+ .++++|.+|.+ +|++..
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 112445668889999999999999 78888888988 999753
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=5e-29 Score=276.35 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=201.3
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeCh---------HhhhhcccccEEEEcCCccEEEEEecCcEEE
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---------ESVQREGENLQAVWSPDTKLIAVVTSSLYLH 92 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~---------~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~ 92 (927)
...++|||||++|+++++.++++|+.. +..+.... ...++...+.+++|+||+ .|++++.||.|+
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSGRCWAGS-----LWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSSSCCCEE-----EEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEeCCceEEeece-----eeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 445899999999999999999999853 11111100 011223568899999996 678999999999
Q ss_pred EEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeec
Q 002405 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (927)
Q Consensus 93 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~ 170 (927)
|||+..+...... . ....++...|++ ++++++.+++|+.||.|++|+..... ..
T Consensus 107 lWd~~~~~~~~~~-------------~------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--~~--- 162 (344)
T 4gqb_B 107 LWELDENETLIVS-------------K------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV--VL--- 162 (344)
T ss_dssp EEEECTTSSCEEE-------------E------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EE---
T ss_pred EEeccCCCceeEe-------------e------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EE---
Confidence 9999754422111 0 001233445555 46778899999999999997654321 11
Q ss_pred ccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeecc
Q 002405 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIK 249 (927)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~ 249 (927)
..+.+|...|.++.| +++|. ++++++.|+++++||..+
T Consensus 163 -------------------------------~~~~~h~~~V~~~~~----------~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 163 -------------------------------SSYRAHAAQVTCVAA----------SPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp -------------------------------EEECCCSSCEEEEEE----------CSSCTTEEEEEETTSCEEEEETTS
T ss_pred -------------------------------EEEcCcCCceEEEEe----------cCCCCCceeeeccccccccccccc
Confidence 123456777877765 67774 778899999999999877
Q ss_pred ccee-----cCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC-CE
Q 002405 250 IDKE-----LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SA 321 (927)
Q Consensus 250 ~~~~-----~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~ 321 (927)
++.. ..|...+ +++|+|+ +++||+|+.||+|++||+.+ ++++.++.+ |.+.|++++|+||| ++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~--------h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 202 PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAV--------HSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEEC--------CSSCEEEEEECSSSSCC
T ss_pred cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEEcC--------CCCCEEEEEEccCCCeE
Confidence 6543 3455566 9999995 67899999999999999988 888888988 99999999999998 58
Q ss_pred EEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcc-cccccc---eeEEEcCCCc
Q 002405 322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGY 383 (927)
Q Consensus 322 Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~-~l~sg~---~~~~W~~~~~ 383 (927)
||+|+.|++|+|||+.++++. .+.+| .+.|++++|+|++ . .+++++ ++++|+..+.
T Consensus 273 lasgs~D~~i~vwd~~~~~~~-~~~~H-~~~V~~v~~sp~~----~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLSELF-RSQAH-RDFVRDATWSPLN----HSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEETTSCEEEECTTCCEEE-EECCC-SSCEEEEEECSSS----TTEEEEEETTSCEEEEECCC-
T ss_pred EEEEeCCCeEEEEECCCCcEE-EEcCC-CCCEEEEEEeCCC----CeEEEEEcCCCeEEEEECCCC
Confidence 999999999999999988765 56777 7889999999987 4 344554 6777776554
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=290.52 Aligned_cols=345 Identities=12% Similarity=0.111 Sum_probs=248.0
Q ss_pred cccccEEEEcCCcc-EEEEE----------ecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceE
Q 002405 67 EGENLQAVWSPDTK-LIAVV----------TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV 135 (927)
Q Consensus 67 ~G~~~~v~wspDg~-~Lav~----------t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 135 (927)
...+.+++|+|||+ +||++ +.||.|++|++..+....... .......|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------------~~~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------------SLQVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------------CCCCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------------EEecCCce
Confidence 34567899999997 89999 889999999987543210000 00112233
Q ss_pred E--EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEE
Q 002405 136 S--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (927)
Q Consensus 136 ~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (927)
. ++++++..+++++.||.+++|+.+........ ...+..|...|.+
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~--------------------------------~~~~~~h~~~v~~ 118 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS--------------------------------MARFSNHSSSVKT 118 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE--------------------------------EEECCCSSSCCCE
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccc--------------------------------hhhccCCccceEE
Confidence 3 44567788999999999999766532111100 0112345666777
Q ss_pred EEEccCcceEEEEEeC-CcEEEEeeecCccceeeecccc------e---e---cCCCCeE-EEEEcCC-CcEEEEEecCC
Q 002405 214 LELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID------K---E---LGSGDAV-CASIAPE-QQILAVGTRRG 278 (927)
Q Consensus 214 i~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~~------~---~---~~h~~~v-~v~~sp~-~~~la~g~~Dg 278 (927)
+.| +|+ ++++++++.|+++++|+..+.+ . . .+|...+ +++|+|+ +.++++|+.||
T Consensus 119 ~~~----------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (416)
T 2pm9_A 119 VKF----------NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188 (416)
T ss_dssp EEE----------CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred EEE----------cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence 665 676 8889999999999999987654 1 1 4688888 9999999 79999999999
Q ss_pred eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCC---cEEEEEccCC-eeEEEec-cccccc
Q 002405 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSGC-RLMSTIR-QISLSS 352 (927)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~Dg---~v~vW~~~~~-~~~~~l~-~~~~~~ 352 (927)
+|++||+.+ ++.+..+.... ...+|.+.|.+++|+|+| .++++++.|+ .|++||+.++ .....+. +| ...
T Consensus 189 ~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~ 264 (416)
T 2pm9_A 189 FASIWDLKA-KKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKG 264 (416)
T ss_dssp CEEEEETTT-TEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSC
T ss_pred CEEEEECCC-CCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCc
Confidence 999999987 66666665510 111238899999999997 6999999998 9999999875 5677777 66 788
Q ss_pred eecceecC-CCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-c-ceeeecccCCCeeeeeeeecCC
Q 002405 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 353 v~s~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~-~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
|.+++|+| ++ ..+++++ ++++|+..+++.+....+|...+ +++++ + +.+++++.|+.+++|++.....
T Consensus 265 v~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 265 ILSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eeEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999999 66 7777776 89999999999999999998888 55555 5 7899999999999999876543
Q ss_pred eEEEee----cCCCCcceEEEee------------cCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 425 RLLVVQ----SEDTDELKILHLN------------LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 425 ~~~~~~----~~~~~~~~w~~~~------------~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
...... ....+...|.+.. . .....|..++.+++|||||++||+|+.||.+ +|++.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 110000 0000011111110 0 1112366788899999999999999999999 9998764
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=5.8e-29 Score=271.05 Aligned_cols=239 Identities=9% Similarity=0.049 Sum_probs=199.2
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
.+|...|.+++ ++|||+++++++.|+++++||..++... .+|...+ +++|+|++++||+|+.||+|
T Consensus 10 ~~h~~~V~~~~----------fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 10 SNRSDRVKGID----------FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EEECSCEEEEE----------ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred cCCCCceEEEE----------ECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 45566677665 4899999999999999999998776443 6788889 99999999999999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC-eeEEEeccccccceecceec
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~s~~~s 359 (927)
++||+.+ ++.+..+.+ |.+.|++++|+|++.+|++|+.|++|++||+.++ .+...+.+| ...|.+++|+
T Consensus 80 ~vwd~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~ 149 (304)
T 2ynn_A 80 RVFNYNT-GEKVVDFEA--------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFN 149 (304)
T ss_dssp EEEETTT-CCEEEEEEC--------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEEC
T ss_pred EEEECCC-CcEEEEEeC--------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEEC
Confidence 9999988 788888888 9999999999999999999999999999999876 566778887 7889999999
Q ss_pred CCCCCCcccccccc---eeEEEcCCCceEEEEE-cCCcceEE--EEec---cceeeecccCCCeeeeeeeecCCeEEEee
Q 002405 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVL--IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~v~--~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
|.+. ..+++|+ ++++|+.......... .+|...+. .+.+ ++.+++++.|+++++|++..+..
T Consensus 150 p~~~---~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~------ 220 (304)
T 2ynn_A 150 PKDP---STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC------ 220 (304)
T ss_dssp TTCT---TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE------
T ss_pred CCCC---CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc------
Confidence 9431 6677776 8999998765543333 44555553 4433 46899999999999999765432
Q ss_pred cCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~ 486 (927)
...+.+|..+|.+++|+|++++||+|+.||.+ +||..+++..
T Consensus 221 --------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 221 --------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp --------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred --------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 45667899999999999999999999999999 9999887643
No 30
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.6e-28 Score=276.26 Aligned_cols=223 Identities=16% Similarity=0.201 Sum_probs=187.5
Q ss_pred EEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
+++|||+.+++++.|+++++||..+.+. +.+|...| +++|+|++++|++|+.||+|++||+.+ ++....+.
T Consensus 130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~---- 204 (393)
T 1erj_A 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS---- 204 (393)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE----
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE----
Confidence 3489999999999999999999876654 37899999 999999999999999999999999987 66655554
Q ss_pred CCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEe-------ccccccceecceecCCCCCCccccccc
Q 002405 301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI-------RQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l-------~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
+.+.|.+++|+| ||++||+|+.||+|++||+.++.++..+ .+| ...|.+++|+|++ ..+++|
T Consensus 205 -----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g----~~l~s~ 274 (393)
T 1erj_A 205 -----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDG----QSVVSG 274 (393)
T ss_dssp -----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTS----SEEEEE
T ss_pred -----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCC----CEEEEE
Confidence 567899999999 9999999999999999999988877776 345 7889999999998 788887
Q ss_pred c---eeEEEcCCCc------------eEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 373 T---SMMQWDEYGY------------RLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 373 ~---~~~~W~~~~~------------~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
+ ++++|+.... .+.....+|...|..+.+ ++.+++++.|+++++|+...+..
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~---------- 344 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---------- 344 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE----------
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE----------
Confidence 6 8999998652 345566788888865555 78899999999999999765443
Q ss_pred CcceEEEeecCcccccCCCceEEEEEcc------CCCEEEEEeCCceE-EEEccC
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASK------DGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~sp------dG~~la~ag~dg~i-~wd~~s 482 (927)
...+.+|..+|.+++|+| +|++||+||.||.+ +|++..
T Consensus 345 ----------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 ----------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 345668999999999986 78999999999999 999754
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=8.7e-28 Score=262.46 Aligned_cols=274 Identities=16% Similarity=0.180 Sum_probs=223.7
Q ss_pred ccccceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC
Q 002405 129 AEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (927)
Q Consensus 129 ~~~~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (927)
.++...|+++ .++++.+++++.||.+++|+..... .. ..+..
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~----------------------------------~~~~~ 63 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FE----------------------------------KTISG 63 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EE----------------------------------EEECC
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cc----------------------------------hhhcc
Confidence 3444556554 5677889999999999987654221 11 11234
Q ss_pred CCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEE
Q 002405 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVEL 282 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~v 282 (927)
|...|.++.| +|||+.+++++.|+.+++||..+++.. .+|...+ +++|+|++++|++|+.||+|++
T Consensus 64 h~~~v~~~~~----------~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 64 HKLGISDVAW----------SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133 (312)
T ss_dssp CSSCEEEEEE----------CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CCCceEEEEE----------cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 5566777665 789999999999999999998776543 6899999 9999999999999999999999
Q ss_pred EeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
||+.+ ++.+..+.. |.++|.+++|+|+|++|++|+.||.|++||+.+++....+..++...+..++|+|++
T Consensus 134 wd~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (312)
T 4ery_A 134 WDVKT-GKCLKTLPA--------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 204 (312)
T ss_dssp EETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS
T ss_pred EECCC-CEEEEEecC--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC
Confidence 99987 777777777 999999999999999999999999999999998888887766556789999999998
Q ss_pred CCCcccccccc---eeEEEcCCCceEEEEEcCCcceE----EEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCC
Q 002405 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV----LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (927)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v----~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~ 433 (927)
..+++++ .+++|+..+++++....+|.... ..+.. ++.+++++.|+.+++|++..+..
T Consensus 205 ----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--------- 271 (312)
T 4ery_A 205 ----KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--------- 271 (312)
T ss_dssp ----SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE---------
T ss_pred ----CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh---------
Confidence 7777765 89999999999988888876542 23333 77899999999999999765432
Q ss_pred CCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe--CCceE-EEEcc
Q 002405 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 481 (927)
Q Consensus 434 ~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag--~dg~i-~wd~~ 481 (927)
...+.+|..+|.+++|+|+++++|+|+ .||.+ +|+..
T Consensus 272 -----------~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 -----------VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -----------EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -----------hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 456678999999999999999999997 69999 99853
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=1.4e-27 Score=263.30 Aligned_cols=290 Identities=19% Similarity=0.211 Sum_probs=209.9
Q ss_pred hcccccEEEEcCC-ccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccC
Q 002405 66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN 142 (927)
Q Consensus 66 ~~G~~~~v~wspD-g~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~ 142 (927)
+.|.+.+|+|+|| +++||+++.||+|+||++......... +. ..+.++...|.+ +++++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------~~----------~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------PQ----------RALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------EE----------EEECCCSSCEEEEEECTTS
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------ee----------EEEeCCCCCEEEEEECCCC
Confidence 5688999999998 689999999999999999754321100 00 011233334444 56778
Q ss_pred CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcce
Q 002405 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (927)
Q Consensus 143 ~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (927)
..+++++.||.+..+.......... ...+...+..
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~--------- 133 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRR------------------------------------FVGHTKDVLS--------- 133 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE------------------------------------EECCSSCEEE---------
T ss_pred CEEEEEcccccceEEeecccceeee------------------------------------ecCCCCceeE---------
Confidence 8999999999998866543221111 0111222322
Q ss_pred EEEEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcCC--CcEEEEEecCCeEEEEeccCCCcceEEE
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~--~~~la~g~~Dg~V~vwd~~~~~~~~~~l 295 (927)
..++++++.+++++.|+.+++|+....... .+|.+.+ +++|+++ ..++++|+.|++|++||+.+ +.....+
T Consensus 134 -~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~ 211 (340)
T 4aow_A 134 -VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNH 211 (340)
T ss_dssp -EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred -EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEe
Confidence 345788889999999999999987654322 6788888 9999886 46789999999999999987 7777777
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
.+ |.++|++++|+|||++||+|+.||.|++||+.+.+.+..+..+ ..+.++.++|++ ..++++.
T Consensus 212 ~~--------h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~----~~~~~~~d~ 277 (340)
T 4aow_A 212 IG--------HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNR----YWLCAATGP 277 (340)
T ss_dssp CC--------CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSS----SEEEEEETT
T ss_pred cC--------CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCC----ceeeccCCC
Confidence 77 9999999999999999999999999999999999888887754 567788888775 4433332
Q ss_pred eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
++++|+.++..++.....+. ......+|..
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~h~~ 307 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEV--------------------------------------------------ISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTTTEEEEEECCC---------------------------------------------------------CCCC
T ss_pred EEEEEECCCCeEEEeccccc--------------------------------------------------eeeeccCCCC
Confidence 66677766555443322110 0123346888
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+|++++|+|||++||+||.||.+ +||+.+|.
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999 99998874
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=7.8e-28 Score=266.60 Aligned_cols=273 Identities=10% Similarity=0.140 Sum_probs=217.1
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+.+|.+.| +++|+|++++||+|+.||+|++||+.+ +..+..+.. |.+.|.+++|+|||++||+|+.|+.+
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEeec--------CCccEEEEEECCCCCEEEEEeCCCeE
Confidence 47899999 999999999999999999999999987 777788877 99999999999999999999999999
Q ss_pred EEEEccCC----eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---
Q 002405 332 TVWSVSGC----RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--- 401 (927)
Q Consensus 332 ~vW~~~~~----~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--- 401 (927)
++|++.++ .....+.+| ...|.++.|++++ . +++++ ++++|+..+++....+.+|...|..+.+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDN----Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECC-SSCEEEEEEEETT----E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEECccCCCcceeEEEecCC-CccEEEEEECCCC----c-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 99999764 455667777 7889999999886 4 44444 8999999999999999999999966655
Q ss_pred cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 402 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
++.+++++.|+++++|++..+.. ...+.+|..+|.+++|+|+|++||+|+.||.+ +||+
T Consensus 196 ~~~l~sg~~d~~v~~wd~~~~~~--------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 196 TRLFVSGACDASAKLWDVREGMC--------------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCcEEEEECCCCee--------------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 77899999999999999865443 34567899999999999999999999999999 9999
Q ss_pred cCCcEE-eeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCcc--EEEEccCCE
Q 002405 481 RQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKP--IVMDVYEDY 555 (927)
Q Consensus 481 ~s~~w~-~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~ 555 (927)
.+++-. .+.... ....+..+.|. +.++++++ .+..+++|+.........+ ..+...+ +.+++.+..
T Consensus 256 ~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~g~-----~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 256 RADQELMTYSHDN--IICGITSVSFSKSGRLLLAGY-----DDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp TTTEEEEEECCTT--CCSCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSC
T ss_pred CCCcEEEEEccCC--cccceEEEEECCCCCEEEEEC-----CCCeEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCE
Confidence 887532 232111 11236677786 55666662 3467999987422111111 1223333 456788889
Q ss_pred EEEEEcCCeEEEEE
Q 002405 556 ILVTYRPFDVHIFH 569 (927)
Q Consensus 556 l~v~~~d~~i~l~~ 569 (927)
|++++.|++|++|+
T Consensus 327 l~s~s~D~~i~iWd 340 (340)
T 1got_B 327 VATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEcCCccEEecC
Confidence 99999999999994
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=3.3e-28 Score=267.66 Aligned_cols=312 Identities=17% Similarity=0.151 Sum_probs=236.3
Q ss_pred cccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCe
Q 002405 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKH 144 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~ 144 (927)
.+.+.+++|||||+.++++..++.+..|......... . ...+...|+ ++++++..
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-----------------~------~~~h~~~v~~~~~~~~~~~ 65 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-----------------N------TLNHGEVVCAVTISNPTRH 65 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-----------------E------EECCSSCCCEEEECSSSSE
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccc-----------------e------eccCCCceEEEEEecCCcE
Confidence 3567899999999999988876644433221000000 0 011222333 44566777
Q ss_pred EEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 145 l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
+++++ +|.+++|+.+....... ........+...|.++.|
T Consensus 66 l~~~~-dg~i~iw~~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~~~~-------- 105 (337)
T 1gxr_A 66 VYTGG-KGCVKVWDISHPGNKSP-------------------------------VSQLDCLNRDNYIRSCKL-------- 105 (337)
T ss_dssp EEEEC-BSEEEEEETTSTTCCSC-------------------------------SEEEECSCTTSBEEEEEE--------
T ss_pred EEEcC-CCeEEEEECCCCCceee-------------------------------eecccccCCCCcEEEEEE--------
Confidence 77777 99999987654321110 000111245667777665
Q ss_pred EEEeCCcEEEEeeecCccceeeecccce-----ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeee
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~-----~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
+|||+.+++++.|+.+++|+....+. ..+|...+ +++|+|+++++++|+.||.|++||+.+ ++....+..
T Consensus 106 --~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~- 181 (337)
T 1gxr_A 106 --LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG- 181 (337)
T ss_dssp --CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC-
T ss_pred --cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec-
Confidence 78889999999999999999876541 26788888 999999999999999999999999987 777777777
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---ee
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~ 375 (927)
|.+.|.+++|+|||+.|++++.||.|++||+.+++....+.. ...+.+++|+|++ ..++++. .+
T Consensus 182 -------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~----~~l~~~~~~~~i 248 (337)
T 1gxr_A 182 -------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSNV 248 (337)
T ss_dssp -------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSCE
T ss_pred -------ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCC----CEEEEEcCCCcE
Confidence 999999999999999999999999999999999888777653 5679999999998 6776664 89
Q ss_pred EEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC
Q 002405 376 MQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (927)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (927)
.+|+..+.+.. ...+|...+..+.+ ++.+++++.|+.+++|++..+.. .....|.
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------------------~~~~~~~ 306 (337)
T 1gxr_A 249 EVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------IFQSKES 306 (337)
T ss_dssp EEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEECS
T ss_pred EEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE---------------------EEEecCC
Confidence 99999888764 45678888855555 78899999999999999765443 1223577
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 453 ~~I~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
.+|.+++|+|+|++|++++.||.+ +|++
T Consensus 307 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 899999999999999999999999 9996
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-28 Score=265.44 Aligned_cols=282 Identities=16% Similarity=0.268 Sum_probs=208.9
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc--e---e-cC-CCCeE-EEEEcCCCcEEEEEec
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--K---E-LG-SGDAV-CASIAPEQQILAVGTR 276 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--~---~-~~-h~~~v-~v~~sp~~~~la~g~~ 276 (927)
.+|...|.++.| +++ ++++++.|+++++|+..... . . .+ |.+.| +++|+|++++||+|+.
T Consensus 11 ~~h~~~v~~~~~----------s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 11 KLYKEKIWSFDF----------SQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp ECCSSCEEEEEE----------ETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCceeeecc----------CCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 456777877665 555 88889999999999876531 1 2 34 99999 9999999999999999
Q ss_pred CCeEEEEeccCC------CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc-C---CeeEEEec
Q 002405 277 RGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-G---CRLMSTIR 346 (927)
Q Consensus 277 Dg~V~vwd~~~~------~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~-~---~~~~~~l~ 346 (927)
||+|++|++... ...+..+.+ |.++|++++|+|||++||+|+.|++|++||+. + .+++.++.
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~--------h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEG--------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CCcEEEEEcccCcCccccceeEEEEcC--------CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 999999998531 234556666 99999999999999999999999999999994 2 25677888
Q ss_pred cccccceecceecCCCCCCcccccccc---eeEEEcCCCc--eEEEEEcCCcceEEEEec-----cceeeecccCCCeee
Q 002405 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYA 416 (927)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~~~~-----~~~~~s~s~d~~~~~ 416 (927)
+| ...|.+++|+|++ ..+++|+ ++++|+..++ +++..+.+|...|..+.| +..+++++.|+++++
T Consensus 151 ~h-~~~v~~v~~~p~~----~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 151 EH-SQDVKHVIWHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp CC-SSCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred cC-CCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 87 7889999999998 7888886 8999998665 677888999999976666 346899999999999
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecCccccc-CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccce
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 494 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e 494 (927)
|++..+... ....|.. ...+.+ |..+|.+++|++++ +||+||.||.+ +|+..++.|+.+......
T Consensus 226 w~~~~~~~~---------~~~~~~~---~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 226 WKYMGDDED---------DQQEWVC---EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEEEEECTT---------SCEEEEE---EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEecCCCcc---------ccceeEE---eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 998765320 0111221 222333 88999999999765 89999999999 999999988654322111
Q ss_pred ee-eEEEEEEeeC----CEEEEEEeecCCCeEEEEEeeCC
Q 002405 495 QK-IQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 495 ~~-~~v~~~~W~~----~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
+. ..+..+.|.. +.+++++ .+..+++|+.+
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s-----~Dg~v~~W~~~ 327 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGG-----DDGIVNFWSLE 327 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEE-----TTSEEEEEEC-
T ss_pred cccceEEEEEEecCCCceEEEEec-----CCCcEEEEEec
Confidence 11 2466777854 3566552 34679999763
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=7.2e-28 Score=272.61 Aligned_cols=284 Identities=14% Similarity=0.208 Sum_probs=213.0
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChH------hh------hhcccccEEEEcCCccEEEEEecC
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSE------SV------QREGENLQAVWSPDTKLIAVVTSS 88 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~------sl------~~~G~~~~v~wspDg~~Lav~t~d 88 (927)
....++|||||++||++++++++||+.. .+..+..+..... .+ .....+.+++|+|||++||+++.|
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d 144 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 144 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCC
Confidence 4556899999999999999999999995 5544444322110 00 011236789999999999999999
Q ss_pred cEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCcccccee
Q 002405 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (927)
Q Consensus 89 g~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~ 168 (927)
|.|++||+..+. . +..
T Consensus 145 ~~i~iwd~~~~~--------------------------------------------~--------~~~------------ 160 (393)
T 1erj_A 145 RLIRIWDIENRK--------------------------------------------I--------VMI------------ 160 (393)
T ss_dssp SCEEEEETTTTE--------------------------------------------E--------EEE------------
T ss_pred CeEEEEECCCCc--------------------------------------------E--------EEE------------
Confidence 999999864110 0 000
Q ss_pred ecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeec
Q 002405 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (927)
Q Consensus 169 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~ 248 (927)
+.+|...|.++.| +|||+.+++++.|+++++||..
T Consensus 161 -----------------------------------~~~h~~~v~~~~~----------~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 161 -----------------------------------LQGHEQDIYSLDY----------FPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp -----------------------------------ECCCSSCEEEEEE----------CTTSSEEEEEETTSEEEEEETT
T ss_pred -----------------------------------EccCCCCEEEEEE----------cCCCCEEEEecCCCcEEEEECC
Confidence 0122334555554 6788889999999999999887
Q ss_pred cccee--cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEE
Q 002405 249 KIDKE--LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (927)
Q Consensus 249 ~~~~~--~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (927)
+++.. ..+.+.+ +++|+| ++++||+|+.||+|++||+.+ +..+..+.... ....+|.+.|.+++|+|||++|++
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC-------CCCSSCEEEEEECTTSSEEEE
T ss_pred CCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEE
Confidence 66543 3345566 999999 899999999999999999987 66665553210 111249999999999999999999
Q ss_pred EEcCCcEEEEEccCC------------eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEE
Q 002405 325 GWKSRGLTVWSVSGC------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 325 g~~Dg~v~vW~~~~~------------~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~ 389 (927)
|+.||+|++||+... .+..++.+| ...|.+++++|++ ..+++|+ ++++|+..+++.+..+
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~sgs~D~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLML 348 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCeEEEEE
Confidence 999999999998642 345567777 7789999999998 7888876 8999999999999999
Q ss_pred cCCcceEEEEec---------cceeeecccCCCeeeeeeee
Q 002405 390 EGSSERVLIFSF---------GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 390 ~~~~~~v~~~~~---------~~~~~s~s~d~~~~~w~~~~ 421 (927)
.+|...|..+.+ ++.++|++.|+++++|++..
T Consensus 349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999966654 46799999999999999764
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=265.20 Aligned_cols=283 Identities=14% Similarity=0.178 Sum_probs=211.7
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce------ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEE
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTV 295 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~------~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l 295 (927)
++++|||+++++++.|+++++|+...... ..+|.+.| +++|+|++++||+|+.|++|++|++.... ..+.++
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL 101 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence 44589999999999999999999875431 15899999 99999999999999999999999987622 345667
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC---eeEEEeccccccceecceecCCCCCCccccccc
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
.+ |.++|.+++|+|||++||+|+.|++|++||+.++ .++..+.+| ...|.+++|+|++ ..+++|
T Consensus 102 ~~--------h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~----~~l~s~ 168 (345)
T 3fm0_A 102 EG--------HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQ----ELLASA 168 (345)
T ss_dssp CC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSS----SCEEEE
T ss_pred cC--------CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCC----CEEEEE
Confidence 77 9999999999999999999999999999999765 345667777 7889999999998 788887
Q ss_pred c---eeEEEcCCCce--EEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeec
Q 002405 373 T---SMMQWDEYGYR--LYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (927)
Q Consensus 373 ~---~~~~W~~~~~~--l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~ 444 (927)
+ ++++|+..+++ +...+.+|...|..+.| ++.+++++.|+++++|+.........+.. ......|...
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~--~~~~~~~~~~-- 244 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC--SGSDPSWKCI-- 244 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC--C---CEEEEE--
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee--eccCCcccee--
Confidence 6 89999987765 44677899999965555 88999999999999999754332100000 0001122221
Q ss_pred Ccccc-cCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE------EeeCCccceeeeEEEEEEeeCC---EEEEEE
Q 002405 445 PVSYI-SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW------RVFGDITQEQKIQSKGLLWLGK---IIVVCN 513 (927)
Q Consensus 445 ~~~~~-~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w------~~f~~~~~e~~~~v~~~~W~~~---~li~~~ 513 (927)
..+. .|...|.+++|+|+|..||+++.|+.+ +|+...+.- .........+.-.|..++|.++ .+++|+
T Consensus 245 -~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 245 -CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp -EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred -EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 2233 388899999999999999999999999 999876431 0000000111224778899753 455552
Q ss_pred eecCCCeEEEEEeeCC
Q 002405 514 YIDSSNTYELLFYPRY 529 (927)
Q Consensus 514 ~~~~~~~~~l~l~~~~ 529 (927)
.+..+++|...
T Consensus 324 -----~Dg~v~~W~~~ 334 (345)
T 3fm0_A 324 -----DDGEVAFWKYQ 334 (345)
T ss_dssp -----TTSCEEEEEEC
T ss_pred -----CCCcEEEEEec
Confidence 34679999774
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=3.3e-28 Score=271.55 Aligned_cols=275 Identities=13% Similarity=0.138 Sum_probs=189.9
Q ss_pred ceEEEEEecCeEEEEEcc-------CeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEE
Q 002405 22 QQIIYFKVNNGLLLIASP-------CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIF 94 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~-------~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~ 94 (927)
...|+|||||++||++++ +++++|+.. .+.+.. ........+.+.+.+++|+||+++ ++++.||.|+||
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-~~~~~~--~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lW 120 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-EGAPNE--SLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELW 120 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC-C---CG--GGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECC-CCCcce--eEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEe
Confidence 445899999999999974 467777763 221110 001111234567889999999865 457889999999
Q ss_pred EEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeeccc
Q 002405 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (927)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~ 172 (927)
|+..+....... ....++...|++ +++++..+++++.||.|++|+.... ...
T Consensus 121 d~~~~~~~~~~~-------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--~~~----- 174 (357)
T 4g56_B 121 EILEKESLLVNK-------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--AVL----- 174 (357)
T ss_dssp --------CCCC-------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--EEE-----
T ss_pred eccccceeEEEe-------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEE-----
Confidence 997544211100 001123334554 4667889999999999998765422 111
Q ss_pred CCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeecccc
Q 002405 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID 251 (927)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~ 251 (927)
..+..|...|.++.| ++++. ++++++.|+++++||..+++
T Consensus 175 -----------------------------~~~~~h~~~v~~v~~----------s~~~~~~~~s~~~dg~v~~wd~~~~~ 215 (357)
T 4g56_B 175 -----------------------------KSYNAHSSEVNCVAA----------CPGKDTIFLSCGEDGRILLWDTRKPK 215 (357)
T ss_dssp -----------------------------EEECCCSSCEEEEEE----------CTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred -----------------------------EEEcCCCCCEEEEEE----------ccCCCceeeeeccCCceEEEECCCCc
Confidence 112345667777665 56664 67888889999999987664
Q ss_pred ee-----cCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEE
Q 002405 252 KE-----LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (927)
Q Consensus 252 ~~-----~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~La 323 (927)
.. ..|...+ +++|+|+ +.+||+|+.|++|++||+.+ ++.+.++.+ |.++|++++|+||| ++||
T Consensus 216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~--------~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAV--------HSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECC--------CSSCEEEEEECSSSSCCEE
T ss_pred eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEec--------cceeEEEEEEcCCCCCEEE
Confidence 33 3456667 9999997 57899999999999999988 788888888 99999999999997 5899
Q ss_pred EEEcCCcEEEEEccCCeeEEEeccccccceecceecCC-CCCCcccccccc---eeEEEcC
Q 002405 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDE 380 (927)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~-~~~~~~~l~sg~---~~~~W~~ 380 (927)
+|+.|++|+|||+.+++++..+ +| .+.|++++|+|. + ..+++++ ++++|+.
T Consensus 287 sgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~----~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 287 SISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDH----SKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSST----TEEEEEETTSCEEEEEC
T ss_pred EEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCC----CEEEEEcCCCeEEEEEC
Confidence 9999999999999999887765 55 788999999984 4 4444443 4455543
No 39
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.5e-28 Score=273.37 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=149.5
Q ss_pred CCCCeE-EEEEcCCCcEEEEEe--cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 255 GSGDAV-CASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~--~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
++.+.+ +++|||||+++|+|+ .|++|+|||+.+ +..+..+. |.+.|.+|+|||||++|++++.| ++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~~~~~~---------~~~~V~~v~fspdg~~l~s~s~~-~~ 199 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTEKFEIE---------TRGEVKDLHFSTDGKVVAYITGS-SL 199 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEEEEEEE---------CSSCCCEEEECTTSSEEEEECSS-CE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcEEEEeC---------CCCceEEEEEccCCceEEeccce-eE
Confidence 456677 999999999987554 789999999987 66666553 67889999999999999999975 55
Q ss_pred EEEEccCCeeE-EEeccccccceecceecCCCCCCcccccccc-------eeEEEcCCCceE----EEEEcCCcceEEEE
Q 002405 332 TVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL----YAIEEGSSERVLIF 399 (927)
Q Consensus 332 ~vW~~~~~~~~-~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l----~~~~~~~~~~v~~~ 399 (927)
.+|+..++... ......+...|.+++|+|++ ..+++++ .+..|+...... .....+|...|.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg----~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 275 (365)
T 4h5i_A 200 EVISTVTGSCIARKTDFDKNWSLSKINFIADD----TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM 275 (365)
T ss_dssp EEEETTTCCEEEEECCCCTTEEEEEEEEEETT----EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE
T ss_pred EEEEeccCcceeeeecCCCCCCEEEEEEcCCC----CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE
Confidence 55555544443 33333337789999999998 7776654 567788765543 23456788888554
Q ss_pred --ec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcc-cccCCCceEEEEEccCCCEEEEEeCCce
Q 002405 400 --SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS-YISQNWPVQHVAASKDGMFLAVAGLHGL 475 (927)
Q Consensus 400 --~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~I~~va~spdG~~la~ag~dg~ 475 (927)
++ ++.+++|+.|+++++|++..+.. ... ..+|..+|++++|||||++||+||.|++
T Consensus 276 ~~Spdg~~lasgs~D~~V~iwd~~~~~~--------------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 276 DVDMKGELAVLASNDNSIALVKLKDLSM--------------------SKIFKQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEE--------------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EECCCCCceEEEcCCCEEEEEECCCCcE--------------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 55 89999999999999999765432 233 4589999999999999999999999999
Q ss_pred E-EEEccC
Q 002405 476 I-LYDIRQ 482 (927)
Q Consensus 476 i-~wd~~s 482 (927)
+ +|++..
T Consensus 336 vrvw~ip~ 343 (365)
T 4h5i_A 336 IHIIKLPL 343 (365)
T ss_dssp EEEEECCT
T ss_pred EEEEEcCC
Confidence 9 999854
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=5.6e-27 Score=257.22 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=221.1
Q ss_pred cccCCCccEEEEEEccCcceEEEEEeC-CcEEEEeeecCccceeeeccc--------ceecCCCCeE-EEEEcCCCcEEE
Q 002405 203 HKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAV-CASIAPEQQILA 272 (927)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~--------~~~~~h~~~v-~v~~sp~~~~la 272 (927)
.+.+|...|.++.| +|+ ++++++++.|+++++|+.... ..+.+|...| +++|+|++++||
T Consensus 12 ~l~gH~~~V~~l~~----------~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 81 (319)
T 3frx_A 12 TLEGHNGWVTSLAT----------SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL 81 (319)
T ss_dssp EECCCSSCEEEEEE----------CSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred EEccccceEEEEEc----------cCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEE
Confidence 34678888888776 554 478999999999999987532 1237899999 999999999999
Q ss_pred EEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccc
Q 002405 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (927)
Q Consensus 273 ~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~ 352 (927)
+|+.||+|++||+.+ ++.+..+.+ |.++|.+++|+|++.+|++|+.|++|++||+.+ .++.++.+| ...
T Consensus 82 s~s~D~~v~~wd~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h-~~~ 150 (319)
T 3frx_A 82 SASWDKTLRLWDVAT-GETYQRFVG--------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGH-NDW 150 (319)
T ss_dssp EEETTSEEEEEETTT-TEEEEEEEC--------CSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCC-SSC
T ss_pred EEeCCCEEEEEECCC-CCeeEEEcc--------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc-CCc
Confidence 999999999999988 778888888 999999999999999999999999999999976 466778777 788
Q ss_pred eecceecCCCCC--Ccccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCC
Q 002405 353 ISSPIVKPNQDC--KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 353 v~s~~~sp~~~~--~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
|.++.++|.... ....+++++ ++++|+..++++.....+|...|..+.+ ++.+++++.|+++++|++..+..
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999987531 123566665 8999999999999999999999955555 88999999999999999764332
Q ss_pred eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEeeCCccceeeeEEEEEEe
Q 002405 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (927)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f~~~~~e~~~~v~~~~W 504 (927)
...+ .+..+|.+++|+|+|.++|+++.++..+|++..+....
T Consensus 231 --------------------~~~~-~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~----------------- 272 (319)
T 3frx_A 231 --------------------MYTL-SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD----------------- 272 (319)
T ss_dssp --------------------EEEE-ECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEE-----------------
T ss_pred --------------------EEEe-cCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeee-----------------
Confidence 1222 23468999999999999999998885599886532100
Q ss_pred eCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 505 LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 505 ~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
-+... +...... ..-....+.+++.+++|++++.|+.|++|++.
T Consensus 273 --------------------~~~~~-~~~~~~~--~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 273 --------------------DLRPE-FAGYSKA--AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp --------------------EECCC-CTTCCGG--GCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred --------------------ccCcc-ccccccC--cCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 00000 0000000 00001136788999999999999999999985
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=282.46 Aligned_cols=369 Identities=12% Similarity=0.105 Sum_probs=246.0
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcC-CccEEEEEecCcEEEEEEEEecC
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsp-Dg~~Lav~t~dg~l~i~~l~~~~ 100 (927)
.....|+|+++.++++. .|+.. +..+..+.+ .+.+.+.+++|+| |+++||+++.||.|++|++....
T Consensus 30 ~~~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~-----~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~ 97 (437)
T 3gre_A 30 RDYKEFGPIQEIVRSPN-----MGNLR--GKLIATLME-----NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII 97 (437)
T ss_dssp GGCGGGCCCCCCCCCCC-----GGGCC--CCEEEEECT-----TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH
T ss_pred hchhhcCCccccccccc-----ccccc--ceEEeeecc-----CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccc
Confidence 33356899999888765 48864 334443321 1348899999999 99999999999999999986421
Q ss_pred ceeecCCCCCCCccceeeeEEeecccccccccceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
...... ... . ..+...|.++ .++++.+++++.||.|++|+.+.......... .. ...
T Consensus 98 ~~~~~~---------~~~--~-------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~--~~~ 156 (437)
T 3gre_A 98 VGEVYS---------SSL--T-------YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF-LN--CEC 156 (437)
T ss_dssp TTCCCS---------CSE--E-------EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE-EE--EEE
T ss_pred cCcccc---------eee--e-------ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec-cc--cce
Confidence 110000 000 0 0123345544 55678899999999999977642111111000 00 000
Q ss_pred cccccccCCCCCccccCCCceecccccC--CCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--- 253 (927)
+.. ..+.. +...+.++.+ .+++||..+++++.|+++++||..+.+..
T Consensus 157 i~~--------------------~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 157 IRK--------------------INLKNFGKNEYAVRMRA--------FVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EEE--------------------EEGGGGSSCCCEEEEEE--------EECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEE--------------------EEccCcccccCceEEEE--------EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 000 00001 2333444432 25689999999999999999998776543
Q ss_pred cC--CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEEC----CCCCEEEEEE
Q 002405 254 LG--SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT----PDNSAFAVGW 326 (927)
Q Consensus 254 ~~--h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s----pdg~~Lasg~ 326 (927)
.+ |.+.+ +++|+|++++||+|+.||+|++||+.+ +..+..+.. +|..+|++++|+ |||.+|++|+
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEec-------CCCCceEEEEeccccCCCccEEEEEc
Confidence 44 78888 999999999999999999999999987 777777652 178899999555 5788999999
Q ss_pred cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcC--CcceEEEEec--c
Q 002405 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG--SSERVLIFSF--G 402 (927)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~--~~~~v~~~~~--~ 402 (927)
.||.|++||+.++++..++.+| ...+..+.|+|++ ..+... + ..+ |...|..+.+ +
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~-~--------------~~~~~~~~~v~~l~~~~~ 340 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIE----KGLEEL-N--------------FCGIRSLNALSTISVSND 340 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESS-SSCCCGGGGSCBC----SSGGGC-C--------------CCCCCSGGGGCCEEEETT
T ss_pred CCCcEEEEEcCCCcEEEEEEcC-CCCCccceecccc----cccccc-e--------------ecccccCCceEEEEECCc
Confidence 9999999999999999999988 6778888888886 333211 0 122 6666644444 6
Q ss_pred ceeeecccCCCeeeeeeeecCCeEEEeecCCC-Ccc---------eE--EE-----eecCcccccCCCceEEEEEccC--
Q 002405 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT-DEL---------KI--LH-----LNLPVSYISQNWPVQHVAASKD-- 463 (927)
Q Consensus 403 ~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~-~~~---------~w--~~-----~~~~~~~~~~~~~I~~va~spd-- 463 (927)
+.+++++.|+.+++|++..+.....+...... ... .. .. .........|...|.+++++++
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~ 420 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE 420 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence 78999999999999998776543333221111 000 00 00 0001223458999999999998
Q ss_pred CCEEEEEeCCceE-EEE
Q 002405 464 GMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 464 G~~la~ag~dg~i-~wd 479 (927)
+.+|++|+.||.+ +|+
T Consensus 421 ~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SEEEEEEETTSCEEEEC
T ss_pred ceEEEEEcCCceEEEeC
Confidence 8899999999999 995
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=2.6e-27 Score=262.79 Aligned_cols=295 Identities=14% Similarity=0.153 Sum_probs=211.9
Q ss_pred cccccceEEEeec--------cCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCce
Q 002405 128 FAEKGLSVSNIVS--------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (927)
Q Consensus 128 ~~~~~~~v~~i~~--------~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 199 (927)
+.++...|++++. ++..+++|+.||.|++|+.......... ..
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------------------------~~ 67 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-----------------------------GI 67 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-----------------------------EE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-----------------------------cc
Confidence 4556667777743 6678999999999999876532211000 00
Q ss_pred ecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEe
Q 002405 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGT 275 (927)
Q Consensus 200 ~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~ 275 (927)
....+.+|...|.++.| +|+|+++++++.|+++++||..+++.. .+|...| +++|+|++++||+|+
T Consensus 68 ~~~~l~~h~~~V~~~~~----------~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLAL----------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp EEEEECCCSSCEEEEEE----------CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE
T ss_pred ccchhccCCCceEEEEE----------CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc
Confidence 00123456667777654 789999999999999999998776543 7899999 999999999999999
Q ss_pred cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCC----------CEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN----------SAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg----------~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
.||+|++||+.. ....... ...+|...|.+++|+|++ .+|++|+.||+|++||. ......++
T Consensus 138 ~d~~i~~wd~~~--~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~ 209 (343)
T 2xzm_R 138 AEREIKLWNILG--ECKFSSA-----EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF 209 (343)
T ss_dssp TTSCEEEEESSS--CEEEECC-----TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE
T ss_pred CCCEEEEEeccC--Cceeeee-----cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE
Confidence 999999999863 2222221 112389999999999987 79999999999999995 45667788
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCC-CceEEEEEcCCcceE--EEEeccceeeecccCCCeeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQV 419 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~~~~~~s~s~d~~~~~w~~ 419 (927)
.+| ...|.+++|+|++ ..+++|+ ++++|+.. ......... +...| +++++...+++++.|+.+++|++
T Consensus 210 ~~h-~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 210 KAH-ESNVNHLSISPNG----KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNL 283 (343)
T ss_dssp ECC-SSCEEEEEECTTS----SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEES
T ss_pred cCc-cccceEEEECCCC----CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEe
Confidence 887 7889999999998 8888876 89999984 333333321 23346 45555334455677889999998
Q ss_pred eecCCe-EEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 420 IYGEDR-LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 420 ~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
..+... +....... ........+|...|.+++|+|+|++||+|+.||.+ +|++.++
T Consensus 284 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 284 MTQSKAPVCTIEAEP--------ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCCSCSEEECCCCS--------GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCCCceEEeecCc--------chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 654331 00000000 00011234788899999999999999999999999 9998654
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=1.8e-27 Score=265.33 Aligned_cols=274 Identities=13% Similarity=0.182 Sum_probs=215.8
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+.+|.+.| +++|+|++++||+|+.||+|++||..+ +.....+.. |...|.+++|+|||..||+|+.|+.+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~--------~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAVTM--------PCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC--------SSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEEec--------CCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 47899999 999999999999999999999999987 667777777 88999999999999999999999999
Q ss_pred EEEEccCC------eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-
Q 002405 332 TVWSVSGC------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF- 401 (927)
Q Consensus 332 ~vW~~~~~------~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~- 401 (927)
++|++... .....+.+| ...|.++.|+|++ ..+++++ ++++|+.++++++..+.+|...+..+.+
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMH-TNYLSACSFTNSD----MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEEC-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeccccccccccceeeecc-CCcEEEEEEeCCC----CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 99998532 234556666 7889999999998 6777776 8999999999999999999988855543
Q ss_pred ----cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002405 402 ----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (927)
Q Consensus 402 ----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i- 476 (927)
++.+++++.|+++++|++..+.. ...+.+|..+|++++|+|+|++||+|+.||.+
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~--------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQC--------------------VQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcE--------------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 46899999999999999865543 34567899999999999999999999999999
Q ss_pred EEEccCCcEE-eeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCc--cEEEEc
Q 002405 477 LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK--PIVMDV 551 (927)
Q Consensus 477 ~wd~~s~~w~-~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~--~~~~~~ 551 (927)
+||+.+++-. .+.... ....+..+.|. +..+++++ .+..+++|+..... .+.....+... .+.+++
T Consensus 266 lwd~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~g~-----~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 266 LYDLRADREVAIYSKES--IIFGASSVDFSLSGRLLFAGY-----NDYTINVWDVLKGS--RVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp EEETTTTEEEEEECCTT--CCSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT
T ss_pred EEECCCCcEEEEEcCCC--cccceeEEEEeCCCCEEEEEE-----CCCcEEEEECCCCc--eEEEEECCCCcEEEEEECC
Confidence 9999887532 232211 11235566775 55666652 34679999874211 11111112232 356788
Q ss_pred cCCEEEEEEcCCeEEEEE
Q 002405 552 YEDYILVTYRPFDVHIFH 569 (927)
Q Consensus 552 ~~~~l~v~~~d~~i~l~~ 569 (927)
.+.+|++++.|+++++|+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999994
No 44
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.96 E-value=1e-27 Score=270.05 Aligned_cols=279 Identities=13% Similarity=0.183 Sum_probs=216.4
Q ss_pred ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 253 ~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+.+|.+.| +++|+|++++||+|+.||+|+|||+.+ +.....++. |...|.+++|+|||++||+|+.|+++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~--------h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKL--------HCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEEC--------CCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEec--------CCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 47899999 999999999999999999999999987 777888888 99999999999999999999999999
Q ss_pred EEEEccCCe-------eEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEE-----cCCcceE
Q 002405 332 TVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-----EGSSERV 396 (927)
Q Consensus 332 ~vW~~~~~~-------~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-----~~~~~~v 396 (927)
++|++.+.. ....+.+| ...+.++.|+|++. ..+++|+ ++++|+..+++.+... .+|...+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQE---TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSS---SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred EEEECCCCccccCCccceeeccCC-CcceEEEEEecCCC---CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 999986421 33456676 78899999998752 3466665 8999999999887776 5788888
Q ss_pred EEEec----cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC
Q 002405 397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 397 ~~~~~----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~ 472 (927)
..+.+ ++.+++++.|+++++||+..... ....+.+|..+|.+++|+|||++||+||.
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------AVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------------CCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------------ceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 66654 57899999999999999864333 14567789999999999999999999999
Q ss_pred CceE-EEEccCCcEE-eeCCccc--eeee-EEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEE------
Q 002405 473 HGLI-LYDIRQKKWR-VFGDITQ--EQKI-QSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR------ 539 (927)
Q Consensus 473 dg~i-~wd~~s~~w~-~f~~~~~--e~~~-~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~------ 539 (927)
||.+ +||+.+++-. .+..... +... .+..++|. +..++++ ..+..+++|+...- .....
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~vwd~~~~---~~~~~~~~~~~ 341 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-----YSNGDCYVWDTLLA---EMVLNLGTLQN 341 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-----CTTSCEEEEETTTC---CEEEEECCSCS
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-----ECCCCEEEEECCCC---ceEEEEecccC
Confidence 9999 9999988643 2322111 1111 24567775 5677766 23467999986311 11111
Q ss_pred -EecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 540 -KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 540 -~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+.-+-..+.+++.+..|++++.|+++++|++.
T Consensus 342 ~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 11112346788999999999999999999874
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.3e-28 Score=282.96 Aligned_cols=323 Identities=9% Similarity=-0.010 Sum_probs=220.0
Q ss_pred cccccEEEEcCCc---------cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE
Q 002405 67 EGENLQAVWSPDT---------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN 137 (927)
Q Consensus 67 ~G~~~~v~wspDg---------~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 137 (927)
.|.+.+++|+|++ ++||+++.++.. . .
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----~---------------------------------------~ 168 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----E---------------------------------------P 168 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------------
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccC-----C---------------------------------------c
Confidence 4778899999997 899999866420 0 0
Q ss_pred eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEc
Q 002405 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (927)
Q Consensus 138 i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (927)
..+++..++.++.||.|++|+++....... ....+..+...|.++.|+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--------------------------------~~~~l~~~~~~V~~v~ws 216 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--------------------------------KVQTIVHSFGEVWDLKWH 216 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE--------------------------------EEEEEEECCCSEEEEEEC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce--------------------------------EEEEEEecCCcEEEEEEC
Confidence 012344567778899999987654221100 001122345668888887
Q ss_pred cCcceEEEEEeCCcEEEEeeecCccceeeecccc--------------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEE
Q 002405 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSGDAV-CASIAPEQQILAVGTRRGVVEL 282 (927)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--------------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~v 282 (927)
|... .+++|.++++++.|+++++|+...+. .+.+|...+ +++|+|++ .||+|+.||+|++
T Consensus 217 p~~~----~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~l 291 (524)
T 2j04_B 217 EGCH----APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAE 291 (524)
T ss_dssp SSCC----CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEE
T ss_pred CCCC----CCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEE
Confidence 6531 13467899999999999999986442 235788899 99999864 8999999999999
Q ss_pred EeccCCCcceEEEeeecCCCCCCCCCCeeEE--EECCCC-CEEEEEEcCCcEEEEEccCCeeEEEeccccc-cceeccee
Q 002405 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCI--AWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIV 358 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l--~~spdg-~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~s~~~ 358 (927)
||+++.......+.+ |.++|++| +|+|+| ++||||+.|++|+|||+.++++..++.+|.. ..|.+++|
T Consensus 292 WD~~~~~~~~~~~~~--------H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV--------HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp EETTBCSSCSEEEEC--------SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred EECCCCCCceEEeec--------ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 999873344556777 99999999 689998 8999999999999999988777767766522 25889999
Q ss_pred cCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecC-------C-
Q 002405 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE-------D- 424 (927)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~-------~- 424 (927)
+|++ ..+++++ ++++|+..++.+...+.+|.+.|..+.+ ++.+++|+.|+++++|+....- .
T Consensus 364 sp~~----~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~ 439 (524)
T 2j04_B 364 CPQI----YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA 439 (524)
T ss_dssp ETTT----TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred CCCc----CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence 9988 6676655 8999999988877777889999966655 8899999999999999864210 0
Q ss_pred -----eEEEee-cCCCC-cc------e--EE-EeecCcccccCCCceEEEEEccCC---CEEEEEeCCceE-EEEccC
Q 002405 425 -----RLLVVQ-SEDTD-EL------K--IL-HLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 425 -----~~~~~~-~~~~~-~~------~--w~-~~~~~~~~~~~~~~I~~va~spdG---~~la~ag~dg~i-~wd~~s 482 (927)
++.-.. +.+.. .. . |. ....+..+.+|..+|.+|+|||+| ..+|+|+.+|++ +|++..
T Consensus 440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 111111 00110 00 1 22 234556777899999999999995 499999999999 999754
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=1.5e-26 Score=256.48 Aligned_cols=296 Identities=11% Similarity=0.118 Sum_probs=216.0
Q ss_pred ccCCCccEEEEEEccCcceEEEEE-eCCcEEEEeeecCccceeeecccc----------eecCCCCeE-EEEEcCCCcEE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLY-SNGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQQIL 271 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s-~dG~~~~~~~~d~~~~~w~~~~~~----------~~~~h~~~v-~v~~sp~~~~l 271 (927)
+.+|...|.++.|..... + +||+++++++.|+++++|+....+ .+.+|...| +++|+|+++++
T Consensus 17 l~gH~~~V~~~~~~~s~~-----~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQK-----ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EECCSSCEEEEEECCCSS-----TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eccchhhhhheeeEEEee-----cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456778888877622111 2 389999999999999999975421 237899999 99999999999
Q ss_pred EEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec--ccc
Q 002405 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR--QIS 349 (927)
Q Consensus 272 a~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~--~~~ 349 (927)
|+|+.||+|++||+.+ ++.+..+.+ |.++|.+++|+|||++|++|+.|++|++||+.+........ +|
T Consensus 92 ~s~s~D~~v~lwd~~~-~~~~~~~~~--------h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~- 161 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRT-GTTYKRFVG--------HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH- 161 (343)
T ss_dssp EEEETTSEEEEEETTS-SCEEEEEEC--------CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSC-
T ss_pred EEEcCCCcEEEEECCC-CcEEEEEcC--------CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCC-
Confidence 9999999999999988 778888888 99999999999999999999999999999998654333221 34
Q ss_pred ccceecceecCCCCCC------cccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeee
Q 002405 350 LSSISSPIVKPNQDCK------YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYAR 417 (927)
Q Consensus 350 ~~~v~s~~~sp~~~~~------~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w 417 (927)
...|.+++|+|++... ...+++++ ++++|+. ..++.....+|...|..+.+ ++.+++++.|+++++|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 6789999999986311 13566665 8999994 45677778899988855555 8899999999999999
Q ss_pred eeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceee
Q 002405 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (927)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~ 496 (927)
++..... +.....+..+|.+++|+|+|+++++++ |+.+ +|++.+++-..
T Consensus 241 d~~~~~~--------------------~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~--------- 290 (343)
T 2xzm_R 241 DILNLTY--------------------PQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAP--------- 290 (343)
T ss_dssp ESSCCSS--------------------CSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCS---------
T ss_pred ECCCCcc--------------------cceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCc---------
Confidence 9854332 222233556799999999999998765 5556 99987653110
Q ss_pred eEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 497 IQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 497 ~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+.. ... .. ...... ... +.-.-..+.+++.+..|++++.|++|++|+++
T Consensus 291 --~~~------------~~~-~~--------~~~~~~-~~~--~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 291 --VCT------------IEA-EP--------ITKAEG-QKG--KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp --EEE------------CCC-CS--------GGGBTT-BCC--SCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred --eEE------------eec-Cc--------chhhhh-hcC--CCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 000 000 00 000000 000 00011236678899999999999999999986
No 47
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-27 Score=271.32 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=173.1
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCC-----eE-EEEEcCCCcEEEEEecCCeEE
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD-----AV-CASIAPEQQILAVGTRRGVVE 281 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~-----~v-~v~~sp~~~~la~g~~Dg~V~ 281 (927)
...|.+++| +|||+.+++++.|+++++|+....-....|.. .+ +++|||||++||+|+.||+|+
T Consensus 85 ~~~V~~vaw----------SPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 85 VCYPRVCKP----------SPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCCEEEEEE----------CSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCcEEEEEE----------CCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 556777665 88999999999999999998543211122554 48 999999999999999999999
Q ss_pred EEeccCCCcc-------eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee---EEEecccccc
Q 002405 282 LYDLAESASL-------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLS 351 (927)
Q Consensus 282 vwd~~~~~~~-------~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~---~~~l~~~~~~ 351 (927)
+||+.+ +.. +.+++.. ..+|.+.|.+++||||| +|+++.|+++++|++.++.. ..+++.++..
T Consensus 155 IWd~~~-~~l~~~~~i~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 155 FFSIRK-NSENTPEFYFESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp EEECCC-CTTTCCCCEEEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred EEECCC-Cccccccceeeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 999987 432 4565431 12388999999999999 88899999999999988773 3567533378
Q ss_pred ceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcCCcceE--EEE--ec-cceeeecccCCCeeeeeeeecCC
Q 002405 352 SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIF--SF-GKCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v--~~~--~~-~~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
.|.+++|+ + ..+++++ ++++|+..++++.....+|.+.+ +.+ ++ ++.+++++.||+ ++|...
T Consensus 228 ~V~svaFs--g----~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---- 296 (588)
T 2j04_A 228 KITDLKIV--D----YKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---- 296 (588)
T ss_dssp CCCCEEEE--T----TEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----
T ss_pred cEEEEEEE--C----CEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----
Confidence 89999998 4 5566555 89999999988855555888887 566 55 678899999999 999864
Q ss_pred eEEEeecCCC------CcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC
Q 002405 425 RLLVVQSEDT------DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 425 ~~~~~~~~~~------~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~ 472 (927)
.+.+..+... ....|+...-+.....++..|.+++|||||+.+|++++
T Consensus 297 ~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred cEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 1221111111 11235431111223334667999999999999999975
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.8e-28 Score=274.03 Aligned_cols=327 Identities=12% Similarity=0.135 Sum_probs=231.4
Q ss_pred ceEEEEEecCe-EEEEE-----------ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCc
Q 002405 22 QQIIYFKVNNG-LLLIA-----------SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL 89 (927)
Q Consensus 22 ~~iv~fs~dg~-lla~~-----------~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg 89 (927)
...++|||||+ +||++ .|++|+||+.. ..... +....+.+.+.+.+++|+||+++||+++.||
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSE----KPIASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGC----SCSCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCC----cEEEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 34478999987 88887 36789999996 32211 1111233457789999999999999999999
Q ss_pred EEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eecc-CCeEEEEecCCcEEEEecCCccccc
Q 002405 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD-NKHMLLGLSDGSLYSISWKGEFYGA 166 (927)
Q Consensus 90 ~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~-~~~l~v~~~dg~i~~~~w~~~~~~~ 166 (927)
.|++|++........ .+ ..+.++...|.+ +.++ +..+++++.||.|++|+........
T Consensus 90 ~v~vw~~~~~~~~~~---------~~----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 90 SLELYSTNEANNAIN---------SM----------ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp CEEEECCSSTTSCCC---------EE----------EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred eEEEeeccccccccc---------ch----------hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999874211000 00 001222233444 4455 6789999999999886554322100
Q ss_pred eeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeC-CcEEEEeeecCcccee
Q 002405 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLA 245 (927)
Q Consensus 167 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w 245 (927)
.. .. + ........+...|.++.| +|+ +.++++++.|+.+++|
T Consensus 151 ~~----------~~--~---------------~~~~~~~~~~~~v~~~~~----------~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 151 SN----------YT--P---------------LTPGQSMSSVDEVISLAW----------NQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp TT----------CC--C---------------BCCCCSCCSSCCCCEEEE----------CSSCTTEEEEESSSSCEEEE
T ss_pred cc----------cc--c---------------cccccccCCCCCeeEEEe----------CCCCCcEEEEEcCCCCEEEE
Confidence 00 00 0 000112345556666655 677 6788999999999999
Q ss_pred eeccccee---cCC------CCeE-EEEEcCCC-cEEEEEecCC---eEEEEeccCCCcceEEEe-eecCCCCCCCCCCe
Q 002405 246 EFIKIDKE---LGS------GDAV-CASIAPEQ-QILAVGTRRG---VVELYDLAESASLIRTVS-LYDWGYSMDDTGPV 310 (927)
Q Consensus 246 ~~~~~~~~---~~h------~~~v-~v~~sp~~-~~la~g~~Dg---~V~vwd~~~~~~~~~~l~-~~~~~~~~~h~~~V 310 (927)
|....+.. ..| ...+ +++|+|++ .++++|+.|| .|++||+.+.......+. + |.+.|
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~v 265 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG--------HQKGI 265 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC--------CSSCE
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC--------ccCce
Confidence 98765443 233 6778 99999997 6999999999 999999987335555555 5 99999
Q ss_pred eEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEE
Q 002405 311 SCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (927)
Q Consensus 311 ~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~ 386 (927)
++++|+| |+++|++|+.||.|++||+.+++++.++.+| ...|.+++|+|++. ..+++++ ++++|+..+....
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAP---DLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCT---TEEEECCSSSEEEEEESCCCCCS
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCC---CEEEEEecCCcEEEEEccCCCCC
Confidence 9999999 9999999999999999999999999999888 78899999999862 3566665 8999998765421
Q ss_pred EEE-----------------cC------------------CcceE--EEEec-cceeeecccCCCeeeeeeee
Q 002405 387 AIE-----------------EG------------------SSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 387 ~~~-----------------~~------------------~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~ 421 (927)
... .+ |...+ .++++ |+.+++++.|+++++|++..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 110 00 33344 66777 89999999999999999754
No 49
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=1.3e-26 Score=266.83 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=239.6
Q ss_pred EEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCc
Q 002405 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (927)
Q Consensus 74 ~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~ 153 (927)
++++||+.|++++.||.|++|++..+..... +.++.+.|.++..+++.+++++.||.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------------~~~h~~~v~~~~~~~~~l~s~~~dg~ 180 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------------LVGHTGGVWSSQMRDNIIISGSTDRT 180 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------------CCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------------EcCCCCCEEEEEecCCEEEEEeCCCe
Confidence 5777899999999999999999864332111 12344567777777889999999999
Q ss_pred EEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEE
Q 002405 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM 233 (927)
Q Consensus 154 i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~ 233 (927)
|++|+++... .. .....|...|.++.+ ++..+
T Consensus 181 i~vwd~~~~~--~~----------------------------------~~~~~h~~~v~~~~~------------~~~~l 212 (445)
T 2ovr_B 181 LKVWNAETGE--CI----------------------------------HTLYGHTSTVRCMHL------------HEKRV 212 (445)
T ss_dssp EEEEETTTTE--EE----------------------------------EEECCCSSCEEEEEE------------ETTEE
T ss_pred EEEEECCcCc--EE----------------------------------EEECCCCCcEEEEEe------------cCCEE
Confidence 9997765321 11 112345566766654 46778
Q ss_pred EEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCC
Q 002405 234 SCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (927)
Q Consensus 234 ~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~ 309 (927)
++++.|+++++||..+++.. .+|...+ ++++ +++++++|+.||+|++||+.+ +..+..+.+ |.++
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--------~~~~ 281 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHTLQG--------HTNR 281 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEEECC--------CSSC
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEEecC--------CCCc
Confidence 99999999999998766543 6889999 9988 788999999999999999987 777888877 9999
Q ss_pred eeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEE
Q 002405 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (927)
Q Consensus 310 V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~ 386 (927)
|.+++| ||..+++|+.||.|++||+.++++..++.+| ...+.++.++ + ..+++|+ ++++|+..+++.+
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--D----NILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--T----TEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--C----CEEEEEeCCCeEEEEECCCCcEE
Confidence 999999 8999999999999999999999999999887 6677777664 3 4566554 8999999999888
Q ss_pred EEEcC---CcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEcc
Q 002405 387 AIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (927)
Q Consensus 387 ~~~~~---~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~sp 462 (927)
....+ |...|..+.+ ++.+++++.|+++++|++..+.....+. .....+|..+|.+++|+|
T Consensus 353 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV---------------TLESGGSGGVVWRIRASN 417 (445)
T ss_dssp EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE---------------ECTTGGGTCEEEEEEECS
T ss_pred EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeee---------------ccccCCCCceEEEEEecC
Confidence 88876 7888988888 8899999999999999987554310000 011136788999999999
Q ss_pred CCCEEEEEeCCce----E-EEEccC
Q 002405 463 DGMFLAVAGLHGL----I-LYDIRQ 482 (927)
Q Consensus 463 dG~~la~ag~dg~----i-~wd~~s 482 (927)
+|.++|+|+.||. + +||+..
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999997 7 999864
No 50
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.8e-26 Score=251.99 Aligned_cols=275 Identities=17% Similarity=0.245 Sum_probs=213.6
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~ 332 (927)
.+|.+.| +++|+|++++||+|+.||+|++|++.+ ++....+.+ |.++|.+++|+|||++|++|+.|+.|+
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISG--------HKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhcc--------CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 6899999 999999999999999999999999987 777777777 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceee
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (927)
+||+.+++++.++.+| ...|.++.|+|++ ..+++|+ ++++|+..+++.......|...+..+.+ ++.++
T Consensus 91 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGH-SNYVFCCNFNPQS----NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EEETTTCCEEEEEECC-SSCEEEEEECSSS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 9999999999999888 7889999999998 7788776 8999999999998999999888855555 78899
Q ss_pred ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 407 s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
+++.|+.+++|++..+... ......+..++.+++|+|+|++|++++.||.+ +||+.+++.
T Consensus 166 ~~~~d~~i~~wd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCL-------------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp EEETTSCEEEEETTTCCEE-------------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred EEeCCCcEEEEECCCCcee-------------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 9999999999997654321 11123466789999999999999999999999 999988764
Q ss_pred E-eeCCccceeeeEEE-EEEee-CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEe-cCCcc--EEEEccCCEEEEE
Q 002405 486 R-VFGDITQEQKIQSK-GLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS-LLAKP--IVMDVYEDYILVT 559 (927)
Q Consensus 486 ~-~f~~~~~e~~~~v~-~~~W~-~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~l~v~ 559 (927)
. .+.....+. ..+. ..... +..++++ +.+..+++|+... ..++.... ....+ +.+++.+..++++
T Consensus 227 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg-----~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 227 LKTYTGHKNEK-YCIFANFSVTGGKWIVSG-----SEDNLVYIWNLQT---KEIVQKLQGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp EEEECSSCCSS-SCCCEEEECSSSCEEEEC-----CTTSCEEEEETTT---CCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEecCCce-EEEEEEEEeCCCcEEEEE-----CCCCEEEEEECCC---chhhhhhhccCCcEEEEeecCcCCceEEE
Confidence 2 232221111 1111 11222 3455554 3446799998742 22222221 22223 3567788888887
Q ss_pred E--cCCeEEEEEE
Q 002405 560 Y--RPFDVHIFHV 570 (927)
Q Consensus 560 ~--~d~~i~l~~~ 570 (927)
+ .|++|++|+.
T Consensus 298 ~~~~d~~i~~W~~ 310 (312)
T 4ery_A 298 ALENDKTIKLWKS 310 (312)
T ss_dssp ECTTTCCEEEEEC
T ss_pred EccCCccEEEecC
Confidence 6 5999999974
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.1e-26 Score=252.08 Aligned_cols=250 Identities=17% Similarity=0.126 Sum_probs=194.9
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccc-----ceecCCCCeE-EEEEcCC--CcEEEEEec
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----DKELGSGDAV-CASIAPE--QQILAVGTR 276 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~-----~~~~~h~~~v-~v~~sp~--~~~la~g~~ 276 (927)
.+|...|.++.| ++||+++++++.|+++++|+.... ..+.+|.+.| +++|+|+ +++||+|+.
T Consensus 6 ~~h~~~V~~~~~----------s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 6 NAHNEMIHDAVM----------DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CSCSSCEEEEEE----------CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcCceEEEEE----------CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 456777877664 789999999999999999997532 2237999999 9999874 899999999
Q ss_pred CCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCCe--eEEEeccccc
Q 002405 277 RGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (927)
Q Consensus 277 Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~ 350 (927)
||+|++||+.+ + ..+..+.. |.++|.+++|+|+ |.+||+|+.|++|++||+..+. ....+.+| .
T Consensus 76 D~~v~iWd~~~-~~~~~~~~~~~--------h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h-~ 145 (297)
T 2pm7_B 76 DGKVMIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH-A 145 (297)
T ss_dssp TTEEEEEEBSS-SCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-S
T ss_pred CCEEEEEEcCC-CceEEEEEeec--------CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-c
Confidence 99999999986 4 34555666 9999999999998 8999999999999999997652 23456666 7
Q ss_pred cceecceecCCCCC---------Ccccccccc---eeEEEcCCCce----EEEEEcCCcceEEEEec---c---ceeeec
Q 002405 351 SSISSPIVKPNQDC---------KYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERVLIFSF---G---KCCLNR 408 (927)
Q Consensus 351 ~~v~s~~~sp~~~~---------~~~~l~sg~---~~~~W~~~~~~----l~~~~~~~~~~v~~~~~---~---~~~~s~ 408 (927)
..|.+++|+|+... ....+++|+ ++++|+..+++ +...+.+|...|..+.| + +.++++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 78999999997410 124677776 89999987654 66678899999966555 2 689999
Q ss_pred ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc-CCcEE
Q 002405 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWR 486 (927)
Q Consensus 409 s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~-s~~w~ 486 (927)
+.|+++++|++...... |... ......|..+|.+++|+|+|++||+|+.||.+ +|+.. .+.|.
T Consensus 226 s~D~~v~iWd~~~~~~~-------------~~~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~ 290 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGP-------------WKKT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (297)
T ss_dssp ETTSCEEEEEESSTTSC-------------CEEE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ECCCcEEEEEeCCCCCc-------------ccee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEE
Confidence 99999999998653320 0000 01123577889999999999999999999999 99986 56776
Q ss_pred eeC
Q 002405 487 VFG 489 (927)
Q Consensus 487 ~f~ 489 (927)
...
T Consensus 291 ~~~ 293 (297)
T 2pm7_B 291 PAG 293 (297)
T ss_dssp EC-
T ss_pred ecc
Confidence 543
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.95 E-value=6.5e-27 Score=266.54 Aligned_cols=306 Identities=11% Similarity=0.096 Sum_probs=231.2
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
++++|||+.+++++.|+.+++|+..+.+.. .+| ..+ ..+++|++++||+|+.||+|++||+.+ +.....+..
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~-- 137 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQA-- 137 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEETTS--
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeeccc--
Confidence 456899999999999999999998765432 334 455 668899999999999999999999986 655555555
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (927)
|.++|++++|+|||++|++|+.|+.|++||+.+++...++.+| ...|.+++|+|++ ..+++++ +++
T Consensus 138 ------h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 138 ------HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRG----RNVLSASLDGTIR 206 (420)
T ss_dssp ------SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTT----TEEEEEETTSCEE
T ss_pred ------ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCC----CEEEEEcCCCcEE
Confidence 9999999999999999999999999999999999888999888 8899999999998 7777776 799
Q ss_pred EEcCCCceEEEEEcCC---cceEEE-----------------------Eec-cceeeecccCCCeeeeeeeecCCeEEEe
Q 002405 377 QWDEYGYRLYAIEEGS---SERVLI-----------------------FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (927)
Q Consensus 377 ~W~~~~~~l~~~~~~~---~~~v~~-----------------------~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~ 429 (927)
+|+..+++.......| ...+.. +++ ++.+++++.|+.+++|++..+...
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---- 282 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---- 282 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE----
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee----
Confidence 9999999988887643 333322 223 678999999999999998654431
Q ss_pred ecCCCCcceEEEeecCcccccCCCceEEEEEccCCC-EEEEEeCCceE-EEEccCCcE--EeeCCccceeeeEEEEEEee
Q 002405 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWL 505 (927)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~-~la~ag~dg~i-~wd~~s~~w--~~f~~~~~e~~~~v~~~~W~ 505 (927)
.....+|..+|.+++|+|+|+ +|++|+.||.+ +||+.+++. ..+... + ...+..+.|.
T Consensus 283 ---------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~--~~~v~~~~~~ 344 (420)
T 3vl1_A 283 ---------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-E--GTPINNVYFA 344 (420)
T ss_dssp ---------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-T--TSCEEEEEEE
T ss_pred ---------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-C--CCCceEEEeC
Confidence 122236788999999999999 99999999999 999988642 222110 1 1235566665
Q ss_pred CC-EEEEEEeecCCCeEEEEEeeCCCC---------CccceeEEEecCCccEEEEccCC---EEEEEEcCCeEEEEEEE
Q 002405 506 GK-IIVVCNYIDSSNTYELLFYPRYHL---------DQSSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVK 571 (927)
Q Consensus 506 ~~-~li~~~~~~~~~~~~l~l~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~---~l~v~~~d~~i~l~~~~ 571 (927)
.+ .++++ +.+..+++|+.... .....+..+.-....+.+++.+. .++++..++.+.+|+++
T Consensus 345 ~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 345 AGALFVSS-----GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTEEEEEE-----TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCEEEEe-----cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 44 45544 35578999986421 11111111111223467788888 78888899999999763
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-26 Score=261.82 Aligned_cols=328 Identities=9% Similarity=0.034 Sum_probs=235.0
Q ss_pred CceEEEEEecCe-EEEEEc-cCeEEEeec----CCcee------EEEEEeeChHh---h-hhcccccEEEEcCCccEEEE
Q 002405 21 SQQIIYFKVNNG-LLLIAS-PCHIELWSS----SQHKV------RLGKYKRDSES---V-QREGENLQAVWSPDTKLIAV 84 (927)
Q Consensus 21 ~~~iv~fs~dg~-lla~~~-~~~v~IW~~----~~~~~------~l~~~~r~~~s---l-~~~G~~~~v~wspDg~~Lav 84 (927)
...-++|+|||+ +||+++ ++.|+||+. . .+. ....+...... . .+.+.+.+++|+|||++||+
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccC-CccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 456699999999 999885 789999999 6 333 22222221110 0 12457899999999999999
Q ss_pred EecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCeEEEEecCCcEEEEecCCc
Q 002405 85 VTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGE 162 (927)
Q Consensus 85 ~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~ 162 (927)
++.+|.|++|+. .+...... ..+...|.+ +.+++..+++++.+|.+++|+....
T Consensus 126 ~~~dg~i~i~~~-~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 126 GVENGELRLWNK-TGALLNVL-----------------------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp EETTSCEEEEET-TSCEEEEE-----------------------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred EeCCCeEEEEeC-CCCeeeec-----------------------cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999982 11111111 112223444 4567788999999999999776532
Q ss_pred cccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCcc
Q 002405 163 FYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL 242 (927)
Q Consensus 163 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~ 242 (927)
.... .+.........+.. .........+.+ +.+++++. +++++.++.+
T Consensus 182 ~~~~-~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~g~i 229 (425)
T 1r5m_A 182 TVMQ-HFELKETGGSSINA--------------------ENHSGDGSLGVD----------VEWVDDDK-FVIPGPKGAI 229 (425)
T ss_dssp EEEE-EECCC-----------------------------------CCCBSC----------CEEEETTE-EEEECGGGCE
T ss_pred cEEE-EeeccccCccceee--------------------ccccCCcceeeE----------EEEcCCCE-EEEEcCCCeE
Confidence 2111 00000000000000 000011111222 34467755 6777888999
Q ss_pred ceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC
Q 002405 243 KLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (927)
Q Consensus 243 ~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd 318 (927)
.+|+....+. ..+|...+ +++|+|++++|++|+.||.|++||+.+ +.....+.. |.+.|.+++|+||
T Consensus 230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYG--------HSQSIVSASWVGD 300 (425)
T ss_dssp EEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECC--------CSSCEEEEEEETT
T ss_pred EEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecC--------CCccEEEEEECCC
Confidence 9999876543 26788888 999999999999999999999999987 777777777 9999999999999
Q ss_pred CCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCce-----------
Q 002405 319 NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----------- 384 (927)
Q Consensus 319 g~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~----------- 384 (927)
| .+++++.|+.|++||+.++++...+..| ...+.+++|+|++ ..+++++ .+.+|+..+++
T Consensus 301 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~----~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 301 D-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQDG----QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp T-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTTS----SEEEEEETTSCEEEEECHHHHC----------
T ss_pred C-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCCC----CEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 9 9999999999999999999999988877 7789999999998 7777765 89999998887
Q ss_pred ---------EEEEEcCCcc--eEEEEec---cceeeecccCCCeeeeeee
Q 002405 385 ---------LYAIEEGSSE--RVLIFSF---GKCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 385 ---------l~~~~~~~~~--~v~~~~~---~~~~~s~s~d~~~~~w~~~ 420 (927)
++....+|.. .|..+.+ ++.+++++.|+.+++|++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8888888866 7855555 7889999999999999863
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=4e-26 Score=250.92 Aligned_cols=305 Identities=13% Similarity=0.206 Sum_probs=233.0
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC--cceEEE
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTV 295 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~--~~~~~l 295 (927)
..++++|||+.++++..++.+..|....... ..+|...+ +++|+|++++|++|+ ||+|++|++.+.. .....+
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~ 91 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL 91 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc
Confidence 4466799999999888777666665433221 26799999 999999999999999 9999999998622 123333
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe--eEEEeccccccceecceecCCCCCCcccccccc
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
.. .+|.++|.+++|+|||++|++|+.||.|++||+.+++ ....+..| ...+.+++|+|++ ..+++++
T Consensus 92 ~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~l~~~~ 160 (337)
T 1gxr_A 92 DC------LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDS----KVCFSCC 160 (337)
T ss_dssp EC------SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTS----SEEEEEE
T ss_pred cc------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC-CCceEEEEECCCC----CEEEEEe
Confidence 31 1289999999999999999999999999999998876 55666666 7789999999988 7777665
Q ss_pred ---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcc
Q 002405 374 ---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (927)
Q Consensus 374 ---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (927)
.+.+|+..+++......+|...+..+.+ ++.+++++.|+.+++|++..+.. ..
T Consensus 161 ~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------~~ 219 (337)
T 1gxr_A 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---------------------LQ 219 (337)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EE
T ss_pred CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce---------------------Ee
Confidence 8999999999999999999988865555 77899999999999999764432 11
Q ss_pred cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEE
Q 002405 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELL 524 (927)
Q Consensus 448 ~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~ 524 (927)
...+..++.+++|+|+|+++++++.+|.+ +||+.+++-..+.. + ...+..+.|. ++.+++++ .+..++
T Consensus 220 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~l~~~~-----~dg~i~ 290 (337)
T 1gxr_A 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--H--ESCVLSLKFAYCGKWFVSTG-----KDNLLN 290 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--C--SSCEEEEEECTTSSEEEEEE-----TTSEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC--C--ccceeEEEECCCCCEEEEec-----CCCcEE
Confidence 23467789999999999999999999999 99998876443322 1 1246788886 55666652 345799
Q ss_pred EeeCCCCCccceeEEEecCCcc--EEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 525 FYPRYHLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 525 l~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
+|+.... ..+........+ +.+++.++.|++++.|+.+.+|++.
T Consensus 291 ~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 291 AWRTPYG---ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEETTTC---CEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EEECCCC---eEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9987421 222233333333 4567888999999999999999874
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=1.9e-26 Score=257.73 Aligned_cols=315 Identities=12% Similarity=0.085 Sum_probs=219.7
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecC--ceeecCCCCCCCccceeeeEEeecccccccccceEE--Eeecc
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE--KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSD 141 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~ 141 (927)
+.+++.+++|+|||++||+++.+|.|++|++..+. ....+ .++...|. ++.++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----------------------~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-----------------------KEHNGQVTGVDWAPD 63 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-----------------------ECCSSCEEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-----------------------cCCCCcccEEEEeCC
Confidence 34678999999999999999999999999997442 11111 12223444 44567
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcc
Q 002405 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (927)
Q Consensus 142 ~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (927)
++.+++++.||.+++|+.+....... .....+...|.++.|
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~----- 104 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVRW----- 104 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEEE-----
T ss_pred CCEEEEEcCCCeEEEEECCCCeeeee----------------------------------EEeecCCCceeEEEE-----
Confidence 88899999999999976543211100 112345566777665
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeecccce------e-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccC------
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------E-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE------ 287 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~------~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~------ 287 (927)
+|+|+.+++++.++.+++|+...... . .+|...+ +++|+|++++|++|+.||.|++||+..
T Consensus 105 -----~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 179 (372)
T 1k8k_C 105 -----APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179 (372)
T ss_dssp -----CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred -----CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccc
Confidence 67889999999999999998876541 1 5688888 999999999999999999999999641
Q ss_pred -----------CCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecc
Q 002405 288 -----------SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (927)
Q Consensus 288 -----------~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~ 356 (927)
.+..+..+.. |.+.|.+++|+|||++|++++.||.|++||+.+++++.++..| ...+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~ 250 (372)
T 1k8k_C 180 PAPTPWGSKMPFGELMFESSS--------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAV 250 (372)
T ss_dssp CCCBTTBSCCCTTCEEEECCC--------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEE
T ss_pred ccccccccccchhhheEecCC--------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEE
Confidence 1445555555 9999999999999999999999999999999998899999887 6789999
Q ss_pred eecCCCCCCcccccccc--eeEEEcCCC--ceEEEE--EcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEee
Q 002405 357 IVKPNQDCKYEPLMSGT--SMMQWDEYG--YRLYAI--EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 357 ~~sp~~~~~~~~l~sg~--~~~~W~~~~--~~l~~~--~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
+|+|++ ..+++|. .+++|+..+ ++.... ...+... .......++.|.......+..-
T Consensus 251 ~~~~~~----~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-- 313 (372)
T 1k8k_C 251 TFITES----SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-----------SQRGLTARERFQNLDKKASSEG-- 313 (372)
T ss_dssp EEEETT----EEEEEETTSSCEEEEEETTTTEEEECCCCCCC-------------------CHHHHHHHCCCCC------
T ss_pred EEecCC----CEEEEEeCCeEEEEEccCcCceEEEeeccCccccc-----------hhhhcchhhhhhhccccccccc--
Confidence 999987 6666655 788888765 432111 1111000 0111122333411111110000
Q ss_pred cCCCCcceEEEeecCccc-ccCCCceEEEEEc-cCC---CEEEEEeCCceE-EEEccCC
Q 002405 431 SEDTDELKILHLNLPVSY-ISQNWPVQHVAAS-KDG---MFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~-~~~~~~I~~va~s-pdG---~~la~ag~dg~i-~wd~~s~ 483 (927)
.......+ .+|..+|++++|+ ++| ++|++||.||.+ +|++.++
T Consensus 314 ----------~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 314 ----------SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ---------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ----------CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 00000222 4899999999965 777 999999999999 9998764
No 56
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=4.1e-27 Score=257.95 Aligned_cols=250 Identities=15% Similarity=0.112 Sum_probs=193.7
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc-----eecCCCCeE-EEEEcC--CCcEEEEEe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAV-CASIAP--EQQILAVGT 275 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~-----~~~~h~~~v-~v~~sp--~~~~la~g~ 275 (927)
..+|...|.++.| ++||+++++++.|+++++||...+. .+.+|.+.| +++|+| ++++||+|+
T Consensus 9 ~~~H~~~V~~v~~----------s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s 78 (316)
T 3bg1_A 9 DTSHEDMIHDAQM----------DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS 78 (316)
T ss_dssp -----CCEEEEEE----------CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred cccccCeEEEeeE----------cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE
Confidence 3567778887765 7899999999999999999987543 237899999 999986 489999999
Q ss_pred cCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCCee---EEEeccc
Q 002405 276 RRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRL---MSTIRQI 348 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~~~---~~~l~~~ 348 (927)
.||+|++||+.+ + .....+.+ |.+.|++++|+|+ |.+||+|+.|++|++|++.++.. ...+.+|
T Consensus 79 ~D~~v~iWd~~~-~~~~~~~~~~~--------h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 79 YDRKVIIWREEN-GTWEKSHEHAG--------HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp TTSCEEEECCSS-SCCCEEEEECC--------CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCCEEEEEECCC-CcceEEEEccC--------CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 999999999986 4 34455666 9999999999998 88999999999999999976532 3344555
Q ss_pred cccceecceecCCCCC-------------Ccccccccc---eeEEEcCCCc---eEEEEEcCCcceEEEEec---c----
Q 002405 349 SLSSISSPIVKPNQDC-------------KYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLIFSF---G---- 402 (927)
Q Consensus 349 ~~~~v~s~~~sp~~~~-------------~~~~l~sg~---~~~~W~~~~~---~l~~~~~~~~~~v~~~~~---~---- 402 (927)
...+.+++|+|+... ....+++|+ ++++|+..+. ++...+.+|...|..+.+ +
T Consensus 150 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 150 -TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp -SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred -cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 778999999997310 114677776 8999998754 566777899999966665 3
Q ss_pred ceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 403 ~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
+.+++++.|+++++|++...... .| .+..+..|..+|.+++|+|+|++||+|+.||.+ +|+..
T Consensus 229 ~~las~s~D~~v~iw~~~~~~~~------------~~----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQDGRVFIWTCDDASSN------------TW----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEETTCEEEEEECSSTTCC------------CC----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcCCCeEEEEEccCcccc------------ch----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 67999999999999997642110 00 022345678899999999999999999999999 99975
Q ss_pred -CCcEEeeC
Q 002405 482 -QKKWRVFG 489 (927)
Q Consensus 482 -s~~w~~f~ 489 (927)
.+.|....
T Consensus 293 ~~g~~~~~~ 301 (316)
T 3bg1_A 293 VDGQWVCIS 301 (316)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEee
Confidence 56676543
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=2.1e-26 Score=280.74 Aligned_cols=297 Identities=18% Similarity=0.197 Sum_probs=218.1
Q ss_pred hcccccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccC
Q 002405 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN 142 (927)
Q Consensus 66 ~~G~~~~v~wspDg-~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~ 142 (927)
|.+.+.+++|+|++ +.|++++.||.|++|++........ . . ...+.++...|. ++++++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------~----~------~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------V----A------QRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------E----E------EEEEECCSSCEEEEEECTTS
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------c----c------cceecCCCCcEEEEEECCCC
Confidence 45778999999975 7899999999999999864321100 0 0 001123334444 456778
Q ss_pred CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcce
Q 002405 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (927)
Q Consensus 143 ~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (927)
..+++|+.||.|++|+..... .. ..+.+|...|.++.|
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~--~~----------------------------------~~~~~h~~~v~~~~~------ 480 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGV--ST----------------------------------RRFVGHTKDVLSVAF------ 480 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTE--EE----------------------------------EEEECCSSCEEEEEE------
T ss_pred CEEEEEeCCCcEEEEECCCCc--ce----------------------------------eEEeCCCCCEEEEEE------
Confidence 899999999999997654321 11 112356667777665
Q ss_pred EEEEEeCCcEEEEeeecCccceeeeccccee------cCCCCeE-EEEEcCCC--cEEEEEecCCeEEEEeccCCCcceE
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIR 293 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~------~~h~~~v-~v~~sp~~--~~la~g~~Dg~V~vwd~~~~~~~~~ 293 (927)
+|||+.+++++.|+++++|+....... .+|.+.+ |++|+|++ ..+++|+.||+|++||+.+ +....
T Consensus 481 ----s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~ 555 (694)
T 3dm0_A 481 ----SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS 555 (694)
T ss_dssp ----CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE
T ss_pred ----eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE
Confidence 789999999999999999996543221 4788889 99999986 6899999999999999987 77777
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
++.+ |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++..+ ..+.+++|+|++ ..++++.
T Consensus 556 ~~~~--------h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~l~~~~ 621 (694)
T 3dm0_A 556 TLAG--------HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNR----YWLCAAT 621 (694)
T ss_dssp EECC--------CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSS----SEEEEEE
T ss_pred EEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCC----cEEEEEc
Confidence 8877 9999999999999999999999999999999999888777653 579999999997 6665554
Q ss_pred --eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC
Q 002405 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (927)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (927)
.+++|+.++++++.....+...... .. + . . .+.....+
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~--~---------~--~-------------------~~~~~~~~ 661 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAE--------KA--D---------N--S-------------------GPAATKRK 661 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC--------------------------------------------------------C
T ss_pred CCCEEEEECCCCCChhhhccccccccc--------cc--c---------c--c-------------------ccccCCce
Confidence 7899999988877665432111000 00 0 0 0 01111123
Q ss_pred CCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 452 ~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
...+.+++|||||++|++||.||.+ +|++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 3357899999999999999999999 99974
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=4.4e-27 Score=269.97 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=200.3
Q ss_pred ccccEEEEcC-CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEee--c-cCC
Q 002405 68 GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S-DNK 143 (927)
Q Consensus 68 G~~~~v~wsp-Dg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~-~~~ 143 (927)
+.+++|+|+| +++.||+|+.||.|+|||+..+....... ..++.+.|++++ + ++.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~---------------------~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK---------------------GIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC---------------------CCSSSCCCCEEEECSSCTT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE---------------------ccCCCCCEEEEEEeCCCCC
Confidence 4588999999 56799999999999999986543221110 123344555554 3 457
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.|++++.||.|++|++++....... ........+.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~---------- 214 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFA----------------------------------SSDTINIWFCS---------- 214 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEE----------------------------------CCSSCSCCCCC----------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEe----------------------------------ccCCCCccEEE----------
Confidence 8999999999999776532211110 00011112223
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce--ecCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+.+++||+++++++.|+++++||...... +.+|.+.| +++|+|+++ ++|+|+.||+|++||+.. ......+..
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~-- 291 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASFLY-- 291 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCCSB--
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceEEE--
Confidence 44689999999999999999999754322 37899999 999999876 799999999999999986 332221111
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEc
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~ 379 (927)
..+|.++|++++|+|||++|++|+.||+|+|||+.++.+...+..|.... . .. .+ .....|.
T Consensus 292 ---~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~---------~----~~-~~-~~~~~~~ 353 (435)
T 4e54_B 292 ---SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH---------F----QH-LT-PIKAAWH 353 (435)
T ss_dssp ---CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC---------C----SS-SC-CCBCEEC
T ss_pred ---eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc---------c----cc-ce-eEEEEEc
Confidence 12399999999999999999999999999999998887777766551110 0 00 00 1122355
Q ss_pred CCCceEEEEEcCCcceEEEEec-cc-eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE
Q 002405 380 EYGYRLYAIEEGSSERVLIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (927)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~-~~-~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (927)
+.+..+... ... +. .+.++..++++++|+...+... ...+.+|...|.+
T Consensus 354 ~~~~~~~~~----------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-------------------~~l~~~~~~~v~s 404 (435)
T 4e54_B 354 PRYNLIVVG----------RYPDPNFKSCTPYELRTIDVFDGNSGKMM-------------------CQLYDPESSGISS 404 (435)
T ss_dssp SSSSCEEEE----------CCCCTTSCCSSTTCCCCEEEECSSSCCEE-------------------EEECCSSCCCCCC
T ss_pred CCCCEEEEE----------EcCCCCeEEEEecCCCEEEEEECCCCcEE-------------------EEEeCCCCCcEEE
Confidence 443322221 111 22 2344556678999997655431 1223467778888
Q ss_pred E-EEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 458 V-AASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 458 v-a~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
+ +|||||++||+|+ |+.+ +||+++++-
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 7 6999999999887 6778 999988764
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-27 Score=277.65 Aligned_cols=317 Identities=8% Similarity=-0.006 Sum_probs=203.6
Q ss_pred ecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhh-hcccccEEEEcCC------ccEEEEEecCcEEEEEEEEecC
Q 002405 29 VNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSPD------TKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 29 ~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wspD------g~~Lav~t~dg~l~i~~l~~~~ 100 (927)
|++++||++ .|++|+||+.. .......... .+. +.|.+.+++|+|+ +.+||+++.||+|++|++..+.
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~-~~~~~~~~~~---~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMN-TSTLHCVKVQ---TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -----------CEEEEEEEEE-TTTCCEEEEE---EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhhhhhccCCCCceEEEEEcc-CCCCCceEEE---EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 344445545 36789999985 3221111000 112 2477889999997 5799999999999999996443
Q ss_pred cee--ecCCCCCCCccceeeeEEeecccccccccceEEEeecc-CCeEEEEecCCcEEEEecCCccccceeecccCCCCc
Q 002405 101 KSI--QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (927)
Q Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~ 177 (927)
... ... ... + ...+.++...|++++.. +..|++|+.||+|.+|+.+... ...
T Consensus 247 ~~~~~~~~-~~~---p----------~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-~~~---------- 301 (524)
T 2j04_B 247 TDVHVFKM-CEK---P----------SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPS---------- 301 (524)
T ss_dssp SSSSEEEC-CCS---C----------SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-SCS----------
T ss_pred ccccccee-ecC---c----------eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-Cce----------
Confidence 210 000 000 0 00123344567777643 3579999999999997654211 000
Q ss_pred ccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCC-cEEEEeeecCccceeeecccce---e
Q 002405 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDK---E 253 (927)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG-~~~~~~~~d~~~~~w~~~~~~~---~ 253 (927)
..+..|...|.++.+ +++++| +++++++.|+++++||..+++. .
T Consensus 302 ------------------------~~~~~H~~~V~sv~~--------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~ 349 (524)
T 2j04_B 302 ------------------------FYDQVHDSYILSVST--------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT 349 (524)
T ss_dssp ------------------------EEEECSSSCEEEEEE--------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE
T ss_pred ------------------------EEeecccccEEEEEE--------EcCCCCCeEEEEeccCCeEEEEECCCCCccccc
Confidence 112346677877731 346788 8999999999999999876543 2
Q ss_pred cCCCC--eE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 254 LGSGD--AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 254 ~~h~~--~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
.+|.. .+ +++|+|+++.+|+|+.|++|++||+.. +.++.++.+ |.++|++|+|||||+.||+|+.||+
T Consensus 350 ~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~g--------H~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 350 VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVS--------RETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEE--------CSSCEEEEECCSSCCBCEEEETTTE
T ss_pred ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeec--------CCCceEEEEeCCCCCeEEEEECCCE
Confidence 45543 36 899999999999999999999999987 777788888 9999999999999999999999999
Q ss_pred EEEEEccCCeeEEEecc----ccccceecceecCCCCCCcccccccceeEEEcCC-CceEEEEEcCCcceE--EEEec-c
Q 002405 331 LTVWSVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-G 402 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~----~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~-~ 402 (927)
|++|++.++ ++..++. +....+.+++|+|++ ..+.......+|... ++.+...+.+|...| +++++ +
T Consensus 421 v~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g----~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 421 LIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKD----DKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp EECCBSCSS-TTTCC------CCCCEEEECBCCSSS----CEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred EEEEechHh-hccccccCccceeeeEEEEeccCCCC----CeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 999998764 3322211 112246789999987 322211122233332 355677778898888 55555 3
Q ss_pred ---ceeeecccCCCeeeeeee
Q 002405 403 ---KCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 403 ---~~~~s~s~d~~~~~w~~~ 420 (927)
..+++|+.|+++++|++.
T Consensus 496 ~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp TTTTEEEEECTTSEEEEEECS
T ss_pred CccHHHHhhccCceEEEEEcc
Confidence 378999999999999964
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=1.5e-25 Score=278.27 Aligned_cols=351 Identities=13% Similarity=0.131 Sum_probs=259.5
Q ss_pred cccceEEE--eeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCC
Q 002405 130 EKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (927)
Q Consensus 130 ~~~~~v~~--i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (927)
++...|++ +++++..+++++.+|.|.+|+++... .. ..+..+
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~----------------------------------~~~~~~ 54 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EV----------------------------------RSIQVT 54 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EE----------------------------------EEEECC
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eE----------------------------------EEEecC
Confidence 33445554 56778899999999999997765321 11 012245
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEE
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vw 283 (927)
...|.++.| +|||+.+++++.|+.+++|+..+++.. .+|.+.+ +++|+|++++|++|+.||+|++|
T Consensus 55 ~~~v~~~~~----------s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 55 ETPVRAGKF----------IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp SSCEEEEEE----------EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEE----------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 566777665 889999999999999999998776543 6799999 99999999999999999999999
Q ss_pred eccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC--
Q 002405 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-- 360 (927)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp-- 360 (927)
++++.......+.+ |.++|.+++|+| ||..|++|+.||+|++||+.++.....+..++...+.+++|+|
T Consensus 125 ~~~~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 196 (814)
T 3mkq_A 125 NWENNWALEQTFEG--------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196 (814)
T ss_dssp EGGGTSEEEEEEEC--------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCST
T ss_pred ECCCCceEEEEEcC--------CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECC
Confidence 99873356677777 999999999999 8999999999999999999888777777776568899999999
Q ss_pred CCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
++ ..+++++ ++.+|+..+++......+|...+..+.+ ++.+++++.|+++++|++..+..
T Consensus 197 ~~----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---------- 262 (814)
T 3mkq_A 197 DK----PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV---------- 262 (814)
T ss_dssp TC----CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE----------
T ss_pred CC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----------
Confidence 65 6676665 8999999999999999999888855544 77899999999999999765432
Q ss_pred CcceEEEeecCcccccCCCceEEEEEccCCC--EEEEEeCCceEEEEccCCcE----------EeeCCcc----------
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASKDGM--FLAVAGLHGLILYDIRQKKW----------RVFGDIT---------- 492 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~spdG~--~la~ag~dg~i~wd~~s~~w----------~~f~~~~---------- 492 (927)
...+..|..++.+++|+|+|+ ++++++.++..+|++..+.- -..+...
T Consensus 263 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 332 (814)
T 3mkq_A 263 ----------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332 (814)
T ss_dssp ----------EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEE
T ss_pred ----------EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeee
Confidence 344556778999999999998 67888777766888754321 1100000
Q ss_pred --------------------ceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEE
Q 002405 493 --------------------QEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 550 (927)
Q Consensus 493 --------------------~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~ 550 (927)
......+..+.|. +..+++++ +..+.+|+.... ..... -+...+.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~------~~~~~i~~~~~~---~~~~~--~~i~~~~~s 401 (814)
T 3mkq_A 333 IRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG------DGEYVIYTALAW---RNKAF--GKCQDFVWG 401 (814)
T ss_dssp CCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE------TTEEEEEETTTT---EEEEE--EECSEEEEC
T ss_pred cccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec------CCEEEEEECccc---cccCC--CceEEEEEe
Confidence 0000113456775 34555552 246778876311 11111 122356778
Q ss_pred ccCCEEEEEEcCCeEEEEE
Q 002405 551 VYEDYILVTYRPFDVHIFH 569 (927)
Q Consensus 551 ~~~~~l~v~~~d~~i~l~~ 569 (927)
+.++.+++++.++.+.+|+
T Consensus 402 pdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 402 PDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp TTSSCEEEECTTCCEEEEE
T ss_pred CCCCeEEEEeCCCcEEEEE
Confidence 8888888888889998884
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.5e-25 Score=246.92 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=186.9
Q ss_pred ccccCCceeeeCCCCCCC--CCceEEEEEec-CeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcC
Q 002405 2 YMAYGWPQVIPLEQGLCP--SSQQIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP 77 (927)
Q Consensus 2 ~~~~g~p~~~~~~~~~~~--~~~~iv~fs~d-g~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsp 77 (927)
||..-.++.+.+...... +...-|+|+|+ +++||+++ |++|+||+..+.........+... .+.+.+.+++|+|
T Consensus 19 ~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~ 96 (340)
T 4aow_A 19 YFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISS 96 (340)
T ss_dssp -------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECT
T ss_pred EEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECC
Confidence 444445554433211111 34555899998 68999885 889999998532211111111111 1346788999999
Q ss_pred CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEE
Q 002405 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSI 157 (927)
Q Consensus 78 Dg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~ 157 (927)
||++|++++.||.+++|+............ .........+.+++..+++++.||.+.+|
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVG---------------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEEC---------------------CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCEEEEEcccccceEEeecccceeeeecC---------------------CCCceeEEEEeecCccceeecCCCeEEEE
Confidence 999999999999999998753221111100 11111223456677889999999999886
Q ss_pred ecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEee
Q 002405 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (927)
Q Consensus 158 ~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~ 237 (927)
+.... .... .....+...+..+.+++ .+.+.++++++
T Consensus 156 d~~~~--~~~~---------------------------------~~~~~~~~~v~~~~~~~--------~~~~~~~~s~~ 192 (340)
T 4aow_A 156 NTLGV--CKYT---------------------------------VQDESHSEWVSCVRFSP--------NSSNPIIVSCG 192 (340)
T ss_dssp CTTSC--EEEE---------------------------------ECSSSCSSCEEEEEECS--------CSSSCEEEEEE
T ss_pred EeCCC--ceEE---------------------------------EEeccccCcccceEEcc--------CCCCcEEEEEc
Confidence 43321 1110 11234555666666533 22345677888
Q ss_pred ecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEE
Q 002405 238 SKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (927)
Q Consensus 238 ~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (927)
.|+++++|+....+.. .+|.+.| +++|+|++++||+|+.||+|++||+.+ ...+..+.. ...|.++
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~---------~~~v~~~ 262 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDG---------GDIINAL 262 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEEC---------SSCEEEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecC---------CceEEee
Confidence 8999999998766543 7899999 999999999999999999999999987 666666654 5689999
Q ss_pred EECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccc--------cccceecceecCCC
Q 002405 314 AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI--------SLSSISSPIVKPNQ 362 (927)
Q Consensus 314 ~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~--------~~~~v~s~~~sp~~ 362 (927)
+|+|++.+++ ++.|+.|++||+.++.+...+..+ +...|++++|+|++
T Consensus 263 ~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 263 CFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred ecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 9999987665 556899999999998877776532 13445555555554
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=5.6e-25 Score=254.35 Aligned_cols=304 Identities=13% Similarity=0.146 Sum_probs=239.5
Q ss_pred EEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEE
Q 002405 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (927)
Q Consensus 135 v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i 214 (927)
+.++..+++.+++|+.||.|++|+..... .. ..+.+|...|.++
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~--~~----------------------------------~~~~~h~~~V~~l 168 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKK--FL----------------------------------LQLSGHDGGVWAL 168 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTE--EE----------------------------------EEECCCSSCEEEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCc--EE----------------------------------EEEeCCCcCEEEE
Confidence 57888889999999999999997654221 11 1123567778887
Q ss_pred EEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEc--CCCcEEEEEecCCeEEEEeccCC
Q 002405 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIA--PEQQILAVGTRRGVVELYDLAES 288 (927)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~s--p~~~~la~g~~Dg~V~vwd~~~~ 288 (927)
.| ++++ .+++++.|+++++|+..+++.. .+|.+.+ +++|+ ++++++++|+.||+|++||+.+
T Consensus 169 ~~----------~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~- 236 (464)
T 3v7d_B 169 KY----------AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK- 236 (464)
T ss_dssp EE----------CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC-
T ss_pred EE----------cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC-
Confidence 75 5666 8889999999999998876543 6899999 99998 5889999999999999999986
Q ss_pred Ccc-----------------------eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 289 ASL-----------------------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 289 ~~~-----------------------~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
+.. ...+.+ |.+.|.++ +|+|.+|++|+.||.|++||+.+++++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--------HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECC--------CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccC--------ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 322 223333 88888887 688999999999999999999999999999
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~ 421 (927)
.+| ...|.+++|+|++ ..+++|+ ++++|+..+++++....+|...+..+.+ ++.+++++.|+++++|++..
T Consensus 307 ~~~-~~~v~~~~~~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 307 SGH-TDRIYSTIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp CCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred cCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 888 7889999999998 7787776 8999999999999999999999988888 88999999999999999865
Q ss_pred cCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEE
Q 002405 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK 500 (927)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~ 500 (927)
+... ....+...+..++|+|+|+++++|+ ||.+ +||+.+++...-... .....+.
T Consensus 382 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~--~~~~~v~ 437 (464)
T 3v7d_B 382 YSRK---------------------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL--KDADQIW 437 (464)
T ss_dssp CCEE---------------------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT--TTCSEEE
T ss_pred Ccee---------------------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc--cCCCcEE
Confidence 4321 1123556778899999999999999 8888 999999874321111 1224577
Q ss_pred EEEeeCCEEEEEEeecCCCeEEEEEee
Q 002405 501 GLLWLGKIIVVCNYIDSSNTYELLFYP 527 (927)
Q Consensus 501 ~~~W~~~~li~~~~~~~~~~~~l~l~~ 527 (927)
.+.|.++.+++++.. ++..-+.+++
T Consensus 438 ~v~~~~~~l~~~~~~--~g~~~i~~ld 462 (464)
T 3v7d_B 438 SVNFKGKTLVAAVEK--DGQSFLEILD 462 (464)
T ss_dssp EEEEETTEEEEEEEE--TTEEEEEEEE
T ss_pred EEEecCCEEEEEEEe--CCeEEEEEee
Confidence 889999988887554 3434444443
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=257.90 Aligned_cols=345 Identities=12% Similarity=0.117 Sum_probs=214.9
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCcee-----------EEEEEeeCh------HhhhhcccccEEEEcCCc--c
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKV-----------RLGKYKRDS------ESVQREGENLQAVWSPDT--K 80 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~-----------~l~~~~r~~------~sl~~~G~~~~v~wspDg--~ 80 (927)
....++|||||++||+++ |+.|+||+.. ... .+..+.... .++...+.+.+++|+|++ .
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 455689999999999985 8899999986 322 122222110 001112678999999999 8
Q ss_pred EEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecC
Q 002405 81 LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWK 160 (927)
Q Consensus 81 ~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~ 160 (927)
.|++++.||.|++|++..+........ +....+.+..........+. .+....|.
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~ 163 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYN--------------------LKEEDGRYRDPTTVTTLRVP-----VFRPMDLM 163 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCS--------------------CC--------CCCCCSCCCC-----EEEEEEEE
T ss_pred eEEEeCCCCeEEEEecccccCCcceec--------------------ccCccccccCcccccceEec-----cccchhee
Confidence 999999999999999975432111000 00000000000000000000 00000000
Q ss_pred CccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecC
Q 002405 161 GEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240 (927)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~ 240 (927)
... . ........|...|.++. ++|||+.++++ .|+
T Consensus 164 ~~~-~---------------------------------~~~~~~~~h~~~v~~~~----------~~~~~~~l~s~-~d~ 198 (447)
T 3dw8_B 164 VEA-S---------------------------------PRRIFANAHTYHINSIS----------INSDYETYLSA-DDL 198 (447)
T ss_dssp EEE-E---------------------------------EEEEECSCCSSCCCEEE----------ECTTSSEEEEE-CSS
T ss_pred eec-c---------------------------------ceEEeccCCCcceEEEE----------EcCCCCEEEEe-CCC
Confidence 000 0 00011234555666655 47899999988 799
Q ss_pred ccceeeecccc-e----------ecCCCCeE-EEEEcCCC-cEEEEEecCCeEEEEeccCCCcc----eEEEeeecCCCC
Q 002405 241 GLKLAEFIKID-K----------ELGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASL----IRTVSLYDWGYS 303 (927)
Q Consensus 241 ~~~~w~~~~~~-~----------~~~h~~~v-~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~----~~~l~~~~~~~~ 303 (927)
++++||..... . ..+|...+ +++|+|++ ++||+|+.||+|++||+.+ +.. ...+..
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~------ 271 (447)
T 3dw8_B 199 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEE------ 271 (447)
T ss_dssp EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECC------
T ss_pred eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEecc------
Confidence 99999987322 1 24789999 99999998 9999999999999999987 554 566766
Q ss_pred CCCCC------------CeeEEEECCCCCEEEEEEcCCcEEEEEccC-CeeEEEeccccccc---------------eec
Q 002405 304 MDDTG------------PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSS---------------ISS 355 (927)
Q Consensus 304 ~~h~~------------~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~---------------v~s 355 (927)
|.+ +|.+++|+|||++|++++. +.|++||+.. ++++.++.+| ... +..
T Consensus 272 --~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~~~~ 347 (447)
T 3dw8_B 272 --PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYLRSKLCSLYENDCIFDKFE 347 (447)
T ss_dssp --C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGGTTTHHHHHHTSGGGCCCC
T ss_pred --CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccccccccccccccccccceE
Confidence 554 9999999999999999999 9999999986 7788888776 221 223
Q ss_pred ceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEE--EEeccceeeecccCCCeeeeeeeecCCeEEEee
Q 002405 356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
++|+|++ ..+++|+ .+++|+..+++.+. +.+|..... .....+.+..++... ...
T Consensus 348 ~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------ 407 (447)
T 3dw8_B 348 CCWNGSD----SVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRK---------KDE------ 407 (447)
T ss_dssp EEECTTS----SEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCC---------TTC------
T ss_pred EEECCCC----CEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcc---------ccc------
Confidence 7888887 6777765 78888888777653 233322210 000011111111100 000
Q ss_pred cCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEc
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~ 480 (927)
.......++..|.+++|+|+|++||+|+.++..+|+.
T Consensus 408 -------------~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 408 -------------ISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp -------------EEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred -------------ccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 0112234566799999999999999999999878864
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=1.1e-25 Score=250.38 Aligned_cols=283 Identities=11% Similarity=0.125 Sum_probs=209.3
Q ss_pred cccceEEEeecc------CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceeccc
Q 002405 130 EKGLSVSNIVSD------NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDH 203 (927)
Q Consensus 130 ~~~~~v~~i~~~------~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~ 203 (927)
++...|.+++.. ...+++++.++.|.+|++........ + ....
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~-~------------------------------~~~~ 64 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL-L------------------------------QSYV 64 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE-E------------------------------EEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe-e------------------------------eecc
Confidence 455667776554 34578888889998877653221110 0 0001
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeC----CcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcC-CCcEEEEE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVG 274 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~d----G~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp-~~~~la~g 274 (927)
...+...|.++.| +|+ |+++++++.|+.+++|+..+++.. .+|...+ +++|+| ++++||+|
T Consensus 65 ~~~~~~~v~~~~~----------~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~ 134 (366)
T 3k26_A 65 DADADENFYTCAW----------TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 134 (366)
T ss_dssp CSCTTCCEEEEEE----------EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEE
T ss_pred ccCCCCcEEEEEe----------ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEE
Confidence 1124556777665 566 789999999999999998766543 6799999 999999 99999999
Q ss_pred ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc-------
Q 002405 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ------- 347 (927)
Q Consensus 275 ~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~------- 347 (927)
+.||+|++||+.+ ++.+..+.. ..+|.+.|.+++|+|+|++|++|+.||.|++||+.+++....+..
T Consensus 135 ~~dg~i~iwd~~~-~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 135 SKDHALRLWNIQT-DTLVAIFGG-----VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp ETTSCEEEEETTT-TEEEEEECS-----TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred eCCCeEEEEEeec-CeEEEEecc-----cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCC
Confidence 9999999999987 666666621 012999999999999999999999999999999987655433332
Q ss_pred ---------------------ccccceecceecCCCCCCcccccccc---eeEEEcCCCc--------------eEEEEE
Q 002405 348 ---------------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------------RLYAIE 389 (927)
Q Consensus 348 ---------------------~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--------------~l~~~~ 389 (927)
| ...|.+++|+ + ..+++++ .+++|+..+. .++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 281 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--G----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF 281 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--T----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE
T ss_pred CCcccccceeeccCccccccCC-cceEEEEEEc--C----CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc
Confidence 4 6788889987 3 4566655 8999998765 346677
Q ss_pred cCCcceEEEEec-----cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC--CCceEEEEEcc
Q 002405 390 EGSSERVLIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAASK 462 (927)
Q Consensus 390 ~~~~~~v~~~~~-----~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~~va~sp 462 (927)
.+|...+..+.+ ++.+++++.|+.+++|++..+.... .....+.+| ..+|++++|+|
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK----------------AKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG----------------CEEEEECCTTCCSCEEEEEECT
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc----------------ccceEEcccccCCceEEEEeCC
Confidence 778777744433 5789999999999999987654210 001234455 78999999999
Q ss_pred CCCEEEEEeCCceE-EEEccC
Q 002405 463 DGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 463 dG~~la~ag~dg~i-~wd~~s 482 (927)
+|++||+|+.||.+ +||+.+
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999 999853
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.8e-26 Score=256.28 Aligned_cols=236 Identities=15% Similarity=0.138 Sum_probs=184.2
Q ss_pred EEEEEeCCcEEEEeeecCccceeeeccc--ce---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc---ceE
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS---LIR 293 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~--~~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~---~~~ 293 (927)
.++++|||+++++++.|+.+++|+.... +. +.+|...+ +++|+|++++||+|+.||+|++||+.+ +. ...
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~ 94 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGTWKQTL 94 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEE
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CCceeeee
Confidence 3456899999999999999999998765 22 26899999 999999999999999999999999987 44 344
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe---eEEEeccccccceecceecCCCCCCccccc
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (927)
.+.. |.+.|++++|+|||+.|++|+.|+.|++||+.++. +...+.+.+...|.+++|+|++ ..++
T Consensus 95 ~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~ 162 (377)
T 3dwl_C 95 VLLR--------LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN----VLLA 162 (377)
T ss_dssp ECCC--------CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS----SEEE
T ss_pred Eecc--------cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC----CEEE
Confidence 4445 99999999999999999999999999999998876 4677877238899999999998 7788
Q ss_pred ccc---eeEEEcCC------------------CceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeE
Q 002405 371 SGT---SMMQWDEY------------------GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRL 426 (927)
Q Consensus 371 sg~---~~~~W~~~------------------~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~ 426 (927)
+++ ++++|+.. .+++.... +|...|..+.+ ++.+++++.|+++++|++..+....
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 776 89999984 35566666 88888855554 8899999999999999987665410
Q ss_pred EEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEee
Q 002405 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (927)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~f 488 (927)
.....+.+|..+|.+++|+|||++|++|+.++.++|+...+.|+..
T Consensus 242 ----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 287 (377)
T 3dwl_C 242 ----------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHT 287 (377)
T ss_dssp ----------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCS
T ss_pred ----------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEE
Confidence 0134566899999999999999999999988888888876666543
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=6.6e-25 Score=243.45 Aligned_cols=305 Identities=11% Similarity=0.042 Sum_probs=202.7
Q ss_pred hcccccEEEEcCCccEEE-EEec---CcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe--e
Q 002405 66 REGENLQAVWSPDTKLIA-VVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V 139 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~La-v~t~---dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~ 139 (927)
+.+.+.+++|+||++.++ +++. ||.|++|++..+...... . .++...|.++ .
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~---------------~-------~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR---------------E-------IEKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE---------------E-------EEESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee---------------e-------ecccCcEEEEEEc
Confidence 456789999999996554 5555 899999999744321100 0 0122344444 4
Q ss_pred cc---CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 140 SD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 140 ~~---~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
++ +..+++++.||.|++|+.+..... . ..+..|...|.++.|
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~----------------------------------~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMP-V----------------------------------YSVKGHKEIINAIDG 119 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSC-S----------------------------------EEECCCSSCEEEEEE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCcc-E----------------------------------EEEEecccceEEEee
Confidence 44 478999999999998765532201 1 112356777888877
Q ss_pred ccCcceEEEEEeCCcEEEEeeecCccceeeecccce----ecCCC----CeE-EEE----EcCCCcEEEEEecCCeEEEE
Q 002405 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSG----DAV-CAS----IAPEQQILAVGTRRGVVELY 283 (927)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~----~~~h~----~~v-~v~----~sp~~~~la~g~~Dg~V~vw 283 (927)
.+.. ++++||+.+++++.|+++++|+....+. ...|. ..+ +++ |+|+++++++|+.||.|++|
T Consensus 120 ~~~~----~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 120 IGGL----GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp ESGG----GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred cccc----ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 5432 3478999999999999999999876542 12222 356 787 78999999999999999999
Q ss_pred eccCCCcceEEEeeecCCCCCCCCCCeeEEEECC---CCCEEEEEEcCCcEEEEEccCCeeEEEec-----cccccceec
Q 002405 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIR-----QISLSSISS 355 (927)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~-----~~~~~~v~s 355 (927)
|+.+ +.. ..... |.+.|.+++|+| ++..|++|+.||.|++||+.++.....+. +| ...|.+
T Consensus 196 d~~~-~~~-~~~~~--------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~ 264 (357)
T 3i2n_A 196 DLRN-MAL-RWETN--------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQ 264 (357)
T ss_dssp ETTT-TEE-EEEEE--------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEE
T ss_pred ECcc-Cce-eeecC--------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEE
Confidence 9987 544 33344 889999999999 99999999999999999997654433322 33 333444
Q ss_pred ceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccc-eeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~-~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
++|+|++ + .+++++.|+.+++|++..+...........
T Consensus 265 ~~~~~~~----------------------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~- 303 (357)
T 3i2n_A 265 VRHLPQN----------------------------------------RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI- 303 (357)
T ss_dssp EEEETTE----------------------------------------EEEEEEEETTSEEEEEEEECCSCC--CCTTSC-
T ss_pred EEECCCC----------------------------------------CcEEEEEeCCCcEEEeecCCCcccccccCCCC-
Confidence 4444332 3 456677777777777765433211000000
Q ss_pred CcceEEEeecCcccccCCCceEEEEEccCCCEEE-EEeCCceE-EEEccCC
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLA-VAGLHGLI-LYDIRQK 483 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la-~ag~dg~i-~wd~~s~ 483 (927)
....-...+....+.+|..+|.+++|+|+|++|+ +|+.||.+ +||+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 304 EMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 0000001112345668999999999999999999 79999999 9998753
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=4.8e-25 Score=268.68 Aligned_cols=295 Identities=17% Similarity=0.228 Sum_probs=217.7
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeC-CcEEEEeeecCccceeeecccc--------eecCCCCeE-EEEEcCCCcEEEE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID--------KELGSGDAV-CASIAPEQQILAV 273 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~~--------~~~~h~~~v-~v~~sp~~~~la~ 273 (927)
+..|...|+++.+ +++ +.++++++.|+++++|+..... .+.+|...| +++|+|++++|++
T Consensus 378 l~~H~~~V~~v~~----------~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 378 MRAHTDMVTAIAT----------PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALS 447 (694)
T ss_dssp EECCSSCEEEEEC----------CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccCCceeEEEEe----------cCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEE
Confidence 3456667766654 555 4789999999999999875421 237899999 9999999999999
Q ss_pred EecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec---cccc
Q 002405 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR---QISL 350 (927)
Q Consensus 274 g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~---~~~~ 350 (927)
|+.||+|+|||+.+ +...+.+.+ |.+.|.+++|+|||+.|++|+.|++|++||..+........ +| .
T Consensus 448 gs~Dg~v~vwd~~~-~~~~~~~~~--------h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h-~ 517 (694)
T 3dm0_A 448 GSWDGELRLWDLAA-GVSTRRFVG--------HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH-R 517 (694)
T ss_dssp EETTSEEEEEETTT-TEEEEEEEC--------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC-S
T ss_pred EeCCCcEEEEECCC-CcceeEEeC--------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC-C
Confidence 99999999999988 777888888 99999999999999999999999999999997764433322 34 6
Q ss_pred cceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCC
Q 002405 351 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 351 ~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
..|.+++|+|++. ...+++|+ ++++|+..+.++...+.+|...|..+.+ ++.+++++.|+++++|++..+..
T Consensus 518 ~~v~~~~~~~~~~--~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 518 DWVSCVRFSPNTL--QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp SCEEEEEECSCSS--SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred CcEEEEEEeCCCC--cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 7899999999861 23566665 8999999999999999999999855555 88999999999999999865432
Q ss_pred eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEe-eCCccceeeeEEEEEE
Q 002405 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV-FGDITQEQKIQSKGLL 503 (927)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~-f~~~~~e~~~~v~~~~ 503 (927)
... ..+...|.+++|||+|.++++++.++..+||+.+++... +.......
T Consensus 596 --------------------~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-------- 646 (694)
T 3dm0_A 596 --------------------LYS-LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAE-------- 646 (694)
T ss_dssp --------------------EEC-CBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------
T ss_pred --------------------EEE-ecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccc--------
Confidence 111 234567999999999999998887664499998875321 11000000
Q ss_pred eeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002405 504 WLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 504 W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
... ....+ . .......+....+.+++.+.+|++++.|++|++|++.
T Consensus 647 ------~~~--~~~~~--------~------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 647 ------AEK--ADNSG--------P------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ------ccc--ccccc--------c------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 000 00000 0 0000000111245678999999999999999999864
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=3.8e-25 Score=248.91 Aligned_cols=270 Identities=12% Similarity=0.091 Sum_probs=204.7
Q ss_pred cccceEEEee--ccC-CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC
Q 002405 130 EKGLSVSNIV--SDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (927)
Q Consensus 130 ~~~~~v~~i~--~~~-~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (927)
++...|.+++ +++ ..+++++.||.|++|+.+....... ....+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------~~~~~ 116 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF----------------------------------IQGMG 116 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE----------------------------------ECCCS
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee----------------------------------eecCC
Confidence 4445666654 555 6799999999999987653321111 11234
Q ss_pred CCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCCCcEEEEEecCCe
Q 002405 207 ISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRGV 279 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~~~~la~g~~Dg~ 279 (927)
+...|.++.| +| +++.+++++.|+++++|+....... .+|...+ +++|+|++++||+|+.||+
T Consensus 117 h~~~v~~~~~----------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 186 (383)
T 3ei3_B 117 PGDAITGMKF----------NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR 186 (383)
T ss_dssp TTCBEEEEEE----------ETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE
T ss_pred cCCceeEEEe----------CCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC
Confidence 6777888776 66 6788889999999999997653221 3455778 9999999999999999999
Q ss_pred EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEccC----CeeEEEecccccccee
Q 002405 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG----CRLMSTIRQISLSSIS 354 (927)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~vW~~~~----~~~~~~l~~~~~~~v~ 354 (927)
|++||++ +..+..+.. |.+.|.+++|+|+|+ +|++|+.|++|++||+.. +.+...+ +| ...|.
T Consensus 187 i~i~d~~--~~~~~~~~~--------h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~-~~~v~ 254 (383)
T 3ei3_B 187 LLLLGLD--GHEIFKEKL--------HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH-EKPVN 254 (383)
T ss_dssp EEEEETT--SCEEEEEEC--------SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC-SSCEE
T ss_pred EEEEECC--CCEEEEecc--------CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC-CCceE
Confidence 9999994 667788887 999999999999999 999999999999999987 5666666 45 78899
Q ss_pred cceecC-CCCCCcccccccc---eeEEEcCCCceEEEEEcCCc-----------------ceE--EEEec-cceeeeccc
Q 002405 355 SPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS-----------------ERV--LIFSF-GKCCLNRGV 410 (927)
Q Consensus 355 s~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~-----------------~~v--~~~~~-~~~~~s~s~ 410 (927)
+++|+| ++ ..+++++ ++++|+..+++......+|. ..+ ..+++ ++. +++.
T Consensus 255 ~~~~s~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 255 AAYFNPTDS----TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp EEEECTTTS----CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred EEEEcCCCC----CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 999999 87 7777765 89999998765544443332 122 33344 444 8889
Q ss_pred CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccccc--CCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
|+++++|++..+.. ...+.+ |...+..++|+|||++||+|+ ||.+ +||+.+
T Consensus 329 d~~i~iwd~~~~~~--------------------~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSGGL--------------------VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTCCE--------------------EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCeEEEEecCCCce--------------------eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 99999999865543 223333 567788889999999999998 8999 999864
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.2e-24 Score=246.76 Aligned_cols=272 Identities=15% Similarity=0.148 Sum_probs=214.9
Q ss_pred EEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEE
Q 002405 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (927)
Q Consensus 135 v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i 214 (927)
+.++..++..+++++.+|.|++|+.+...... .....+...|.++
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~-----------------------------------~~~~~~~~~v~~v 140 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSA-----------------------------------LAETDESTYVASV 140 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEE-----------------------------------EEECCTTCCEEEE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeE-----------------------------------eeecCCCCCEEEE
Confidence 44567777889999999999987664322111 1112245667776
Q ss_pred EEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc
Q 002405 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS 290 (927)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~ 290 (927)
.| +|||+++++++.|+.+++|+..+.+.. .+|...+ +++| +++++++|+.||+|++||+.....
T Consensus 141 ~~----------s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 141 KW----------SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp EE----------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC
T ss_pred EE----------CCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc
Confidence 65 788999999999999999998765443 6899999 9999 457999999999999999985466
Q ss_pred ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccc
Q 002405 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (927)
Q Consensus 291 ~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (927)
....+.. |.+.|.+++|+|||++|++|+.||.|++||+.++....++.+| ...|.+++|+|++. ..++
T Consensus 209 ~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~ll~ 276 (401)
T 4aez_A 209 QIGTLQG--------HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQS---NLLA 276 (401)
T ss_dssp EEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTST---TEEE
T ss_pred eeeEEcC--------CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCC---CEEE
Confidence 6777777 9999999999999999999999999999999998888888887 78899999999862 3444
Q ss_pred cc-----ceeEEEcCCCceEEEEEcCCcceEEEEe--c-cceeee--cccCCCeeeeeeeecCCeEEEeecCCCCcceEE
Q 002405 371 SG-----TSMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (927)
Q Consensus 371 sg-----~~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s--~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (927)
+| ..+.+|+..+++++.... +...+..+. + ++.+++ |+.|+.+++|++..+...
T Consensus 277 ~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--------------- 340 (401)
T 4aez_A 277 TGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--------------- 340 (401)
T ss_dssp EECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE---------------
T ss_pred EecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce---------------
Confidence 42 289999999988887775 345664444 4 777877 668999999998653321
Q ss_pred EeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 441 ~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
....+.+|..+|.+++|+|||++|++|+.||.+ +|++.+++
T Consensus 341 ---~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 341 ---KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ---EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ---eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 012345788999999999999999999999999 99998875
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=9.8e-25 Score=249.14 Aligned_cols=272 Identities=16% Similarity=0.234 Sum_probs=206.9
Q ss_pred EEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 002405 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (927)
Q Consensus 24 iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (927)
+|++|+++ +||++.|++|+|||.. .+..+..+... .+.+.+.+|+|+|||++||+|+.||.|++|++..+....
T Consensus 110 ~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 110 LVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred eEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 47788765 8899899999999996 55443333211 123568899999999999999999999999986433211
Q ss_pred ecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccccc
Q 002405 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (927)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~ 183 (927)
. +.++...+.+++.++..+++|+.++.+.++++.......
T Consensus 184 ~-----------------------~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~----------------- 223 (420)
T 4gga_A 184 N-----------------------MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV----------------- 223 (420)
T ss_dssp E-----------------------ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE-----------------
T ss_pred E-----------------------EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceee-----------------
Confidence 1 123445677888889999999999999887654322111
Q ss_pred ccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce-------ecCC
Q 002405 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-------ELGS 256 (927)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~-------~~~h 256 (927)
..+..|...+..+. ++++|+.+++++.|+.+++|+...++. ...|
T Consensus 224 ------------------~~~~~h~~~~~~~~----------~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~ 275 (420)
T 4gga_A 224 ------------------ATLSGHSQEVCGLR----------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275 (420)
T ss_dssp ------------------EEEECCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC
T ss_pred ------------------EEecccccceeeee----------ecCCCCeeeeeeccccceEEeeccccccceeeeeeccc
Confidence 11223444455444 578999999999999999998765432 2578
Q ss_pred CCeE-EEEEcCCC-cEEEE--EecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE--cCCc
Q 002405 257 GDAV-CASIAPEQ-QILAV--GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSRG 330 (927)
Q Consensus 257 ~~~v-~v~~sp~~-~~la~--g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~--~Dg~ 330 (927)
...| +++|+|.+ .++++ |+.|++|++||+.+ +.....+.. ...|.++.|+|+++.+++++ .|+.
T Consensus 276 ~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~---------~~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDA---------HSQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEEC---------SSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeecc---------ccceeeeeecCCCCeEEEEEecCCCE
Confidence 8899 99999964 56665 45899999999988 777666654 46789999999999988876 7899
Q ss_pred EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCce
Q 002405 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~ 384 (927)
|+|||+.+++++.++.+| .+.|++++|+|++ ..++||+ ++++|+.....
T Consensus 346 I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSCSS
T ss_pred EEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCCCC
Confidence 999999999999999998 8899999999998 8888876 89999876543
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=1.2e-24 Score=251.42 Aligned_cols=299 Identities=11% Similarity=0.115 Sum_probs=224.1
Q ss_pred EEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEEEecCC
Q 002405 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDG 152 (927)
Q Consensus 74 ~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~dg 152 (927)
++++++++|++++.||.|++||+..+..... +.++.+.|.+++..+ ..+++++.||
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-----------------------~~~h~~~V~~l~~~~~~~l~s~s~dg 183 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------------LSGHDGGVWALKYAHGGILVSGSTDR 183 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEE-----------------------ECCCSSCEEEEEECSTTEEEEEETTS
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEE-----------------------EeCCCcCEEEEEEcCCCEEEEEeCCC
Confidence 4455778999999999999999764321111 123444566665443 3788999999
Q ss_pred cEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcE
Q 002405 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (927)
Q Consensus 153 ~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~ 232 (927)
.|++|+.+... .. ..+..|...|.++.+++ .++|+.
T Consensus 184 ~i~vwd~~~~~--~~----------------------------------~~~~~h~~~v~~l~~~~--------~~~~~~ 219 (464)
T 3v7d_B 184 TVRVWDIKKGC--CT----------------------------------HVFEGHNSTVRCLDIVE--------YKNIKY 219 (464)
T ss_dssp CEEEEETTTTE--EE----------------------------------EEECCCSSCEEEEEEEE--------SSSCEE
T ss_pred CEEEEECCCCc--EE----------------------------------EEECCCCCccEEEEEec--------CCCCCE
Confidence 99997664321 11 11234667788877532 368889
Q ss_pred EEEeeecCccceeeecccc--------------------------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEec
Q 002405 233 MSCSVSKKGLKLAEFIKID--------------------------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (927)
Q Consensus 233 ~~~~~~d~~~~~w~~~~~~--------------------------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~ 285 (927)
+++++.|+++++|+..... ...+|...+ ++ +++++++++|+.||+|++||+
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~ 297 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV 297 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEET
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999876543 125677777 54 788999999999999999999
Q ss_pred cCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC
Q 002405 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (927)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~ 365 (927)
.+ ++.+..+.+ |.+.|.+++|+|||+.|++|+.||.|++||+.+++++.++.+| ...|.++.+++
T Consensus 298 ~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~----- 362 (464)
T 3v7d_B 298 AQ-MKCLYILSG--------HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSD----- 362 (464)
T ss_dssp TT-TEEEEEECC--------CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECS-----
T ss_pred CC-CcEEEEecC--------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEcC-----
Confidence 87 778888877 9999999999999999999999999999999999999999988 78899999873
Q ss_pred cccccccc---eeEEEcCCCceEEEEE-cCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEE
Q 002405 366 YEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (927)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (927)
..+++++ ++++|+..+++..... ..+...+..+++ ++.+++++ |+.+++|++..++.
T Consensus 363 -~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~---------------- 424 (464)
T 3v7d_B 363 -KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL---------------- 424 (464)
T ss_dssp -SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE----------------
T ss_pred -CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE----------------
Confidence 4566655 8999999887655544 333445577777 77888877 89999999876543
Q ss_pred EeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEE
Q 002405 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 478 (927)
Q Consensus 441 ~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~w 478 (927)
+.....+|..+|.+++|+ ++..+++++.+|..+|
T Consensus 425 ---~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 425 ---VHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp ---EESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ---EehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 112355788999999997 4455556667776633
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=9.2e-25 Score=246.60 Aligned_cols=306 Identities=14% Similarity=0.043 Sum_probs=220.3
Q ss_pred cccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCC
Q 002405 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (927)
Q Consensus 128 ~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (927)
+.++...|++++.+++.+++++.||.|++|+.+........ .....+..+
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~------------------------------~~~~~~~~h 61 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPK------------------------------DKSYSHFVH 61 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGG------------------------------GGEEEEECC
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCC------------------------------CcceEEecC
Confidence 45667788888888889999999999999776543211000 000112356
Q ss_pred CccEEEEEEccCcceEEEEEeC----C---cEEEEeeecCccceeeecccce-----e---cCC-----CCeE-EEEEc-
Q 002405 208 SSAIIWLELCLPMRLLFVLYSN----G---QLMSCSVSKKGLKLAEFIKIDK-----E---LGS-----GDAV-CASIA- 265 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~d----G---~~~~~~~~d~~~~~w~~~~~~~-----~---~~h-----~~~v-~v~~s- 265 (927)
...|.++.| +++ | +.+++++.|+.+++|+....+. . .+| ...+ +++|+
T Consensus 62 ~~~v~~~~~----------~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 62 KSGLHHVDV----------LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp TTCEEEEEE----------EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcEEEEEE----------ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 667777765 667 8 9999999999999999876553 2 567 4777 99999
Q ss_pred ---CCCcE-EEEEecCCeEEEEeccCC-----CcceE-----EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 266 ---PEQQI-LAVGTRRGVVELYDLAES-----ASLIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 266 ---p~~~~-la~g~~Dg~V~vwd~~~~-----~~~~~-----~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
|++++ |++|+.||.|++||+... +..+. .+.+. ......|.+.|.+++|+|+| .|++|+.||.|
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-VESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee-eccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 99999 999999999999999751 12333 44320 00111288999999999999 99999999999
Q ss_pred EEEEccCCeeEEEecc---cc--ccceecceecCCCCCCcccccccc------eeEEEcCCCceEEEEEcC---------
Q 002405 332 TVWSVSGCRLMSTIRQ---IS--LSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG--------- 391 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~---~~--~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~--------- 391 (927)
++||+.+++.+..+.. |. ...+.+++|+|++ ..+++++ .+.+|+..+++.+....+
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 9999999988888876 41 5679999999998 6776653 588999999998888888
Q ss_pred ----CcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEee------cCCCCcceEEEeecCcccccCCCceEEE
Q 002405 392 ----SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ------SEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 392 ----~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~------~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
|...|..+.+ ++.+++++.|+.+++|++..+.. +.... +.+.+.. .. .......|..+|+++
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~---~g-~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDIL---AV-DEHGDSLAEPGVFDV 360 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCC---CB-CTTSCBCSSCCEEEE
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhh---cc-ccccccccCCceeEE
Confidence 8888866655 78999999999999999865432 11111 0000000 00 000112238999999
Q ss_pred EEccCC----------CEEEEEeCCceE-EEEccCCc
Q 002405 459 AASKDG----------MFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 459 a~spdG----------~~la~ag~dg~i-~wd~~s~~ 484 (927)
+|+|+| ++|++|+.||.+ +|++.+++
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999 799999999999 99998763
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=1.1e-24 Score=243.37 Aligned_cols=233 Identities=14% Similarity=0.120 Sum_probs=190.8
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccc--e---ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~--~---~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
++++|||+++++++.++.+++|+....+ . +.+|...+ +++|+|++++||+|+.||+|++||+.+ ++.......
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC-CeeeeeEEe
Confidence 3458899999999999999999987653 2 26899999 999999999999999999999999986 544443332
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe---eEEEeccccccceecceecCCCCCCcccccccc-
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (927)
. .|.+.|.+++|+|||++|++|+.|+.+++|++..+. ....+...+...+.+++|+|++ ..+++++
T Consensus 93 ~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~ 162 (372)
T 1k8k_C 93 L------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----VLLAAGSC 162 (372)
T ss_dssp C------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----SEEEEEET
T ss_pred e------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC----CEEEEEcC
Confidence 1 288999999999999999999999999999998765 2344433337889999999998 7777765
Q ss_pred --eeEEEcC------------------CCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEee
Q 002405 374 --SMMQWDE------------------YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 374 --~~~~W~~------------------~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
.+.+|+. ..++++....+|...+..+.+ ++.+++++.|+.+++|++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------ 236 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA------ 236 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE------
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce------
Confidence 8999994 367788888888888865555 77999999999999999876543
Q ss_pred cCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC--CcEEee
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--KKWRVF 488 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s--~~w~~f 488 (927)
...+..|..+|.+++|+|+|+++++| .||.+ +|++.+ +.|...
T Consensus 237 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 237 --------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp --------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred --------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence 34556788899999999999999888 78888 999998 877543
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=6.6e-26 Score=254.33 Aligned_cols=237 Identities=10% Similarity=0.107 Sum_probs=173.3
Q ss_pred cccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCCe
Q 002405 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (927)
Q Consensus 67 ~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~ 144 (927)
.+.+.+++|+|||++||+++.||.|++|++..+..... ..+.++...|.+ ++++++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA---------------------RTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC---------------------CCBCCCSSCEEEEEECTTTCC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE---------------------EEEecCCceEEEEEEeCCCCE
Confidence 46788999999999999999999999999984320100 011223334444 4566788
Q ss_pred EEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 145 l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
+++++.||.|++|+.+... ... .......+...|.++.|
T Consensus 70 l~s~s~d~~v~vwd~~~~~--~~~-------------------------------~~~~~~~~~~~v~~~~~-------- 108 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDG--TWK-------------------------------QTLVLLRLNRAATFVRW-------- 108 (377)
T ss_dssp EEEEETTSSEEEC--------CCC-------------------------------CEEECCCCSSCEEEEEC--------
T ss_pred EEEEeCCCeEEEEEcCCCC--cee-------------------------------eeeEecccCCceEEEEE--------
Confidence 9999999999986554322 000 00122346667877765
Q ss_pred EEEeCCcEEEEeeecCccceeeecccce------ecC-CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC--------
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-------- 288 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~------~~~-h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-------- 288 (927)
+|||+.+++++.|+++++|+....+. +.+ |...+ +++|+|++++||+|+.||+|++||+...
T Consensus 109 --~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 109 --SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp --CTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred --CCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 67899999999999999999876542 245 89999 9999999999999999999999998631
Q ss_pred ---------CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee----EEEeccccccceec
Q 002405 289 ---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISS 355 (927)
Q Consensus 289 ---------~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~s 355 (927)
+..+..+ +|.+.|++++|+|||++||+|+.||+|++||+.++.. +.++.+| ...|.+
T Consensus 187 ~~~~~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~ 256 (377)
T 3dwl_C 187 SVWGSRLPFNTVCAEY---------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRS 256 (377)
T ss_dssp CSSCSCCCEEEEEECC---------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEE
T ss_pred cccccccchhhhhhcc---------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEE
Confidence 1112222 3999999999999999999999999999999988876 7778777 788999
Q ss_pred ceecCCCCCCcccccccc--eeEEEcCC
Q 002405 356 PIVKPNQDCKYEPLMSGT--SMMQWDEY 381 (927)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~--~~~~W~~~ 381 (927)
++|+|++ ..+++|+ .+.+|...
T Consensus 257 ~~~s~~~----~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 257 LLWANES----AIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEEETT----EEEEEESSSSEEEECCC
T ss_pred EEEcCCC----CEEEEEcCCcEEEEEeC
Confidence 9999998 7888776 55566554
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-24 Score=235.03 Aligned_cols=273 Identities=14% Similarity=0.139 Sum_probs=207.8
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~ 99 (927)
....++| |++++||+++ |+.|+||+.. ......... .+.+.+.+++|+||++.|++++.||.+++|++...
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVY------TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEE------ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEee------cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 4555788 8998888885 8899999995 443333332 13567889999999999999999999999998643
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
..... +. .+..+...|.+++.+++.+++++.||.+++|+ . . ...
T Consensus 92 ~~~~~----------~~----------~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~-~--~~~------------ 135 (313)
T 3odt_A 92 SGEDP----------LY----------TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-E-G--SLV------------ 135 (313)
T ss_dssp TTSCC-----------C----------EECCCSSCEEEEEEETTEEEEEETTSEEEEEE-T-T--EEE------------
T ss_pred CCCCc----------cc----------chhhcccCEEEEEecCCEEEEEeCCCCEEEEc-C-C--cEE------------
Confidence 21100 00 11234456778888889999999999999865 1 1 111
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeeccccee-cC-C
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LG-S 256 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~~~~~-~~-h 256 (927)
.....+...+.++.+ ++ ++..+++++.|+.+++||....... .. |
T Consensus 136 ----------------------~~~~~~~~~v~~~~~----------~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 183 (313)
T 3odt_A 136 ----------------------YNLQAHNASVWDAKV----------VSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183 (313)
T ss_dssp ----------------------EEEECCSSCEEEEEE----------EETTTTEEEEEETTSCEEEEETTEEEEEECSSC
T ss_pred ----------------------EecccCCCceeEEEE----------ccCCCCEEEEEECCCCEEEEecCceEEEEeccC
Confidence 111234556666654 44 8999999999999999995443222 34 8
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
...+ +++|+|+++ +++|+.||.|++||+.+ ++.+..+.. |.++|++++|+||| .|++|+.||.|++||
T Consensus 184 ~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG--------HESFVYCIKLLPNG-DIVSCGEDRTVRIWS 252 (313)
T ss_dssp SSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC--------CSSCEEEEEECTTS-CEEEEETTSEEEEEC
T ss_pred cccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc--------CCceEEEEEEecCC-CEEEEecCCEEEEEE
Confidence 8888 999999999 99999999999999988 778888887 99999999999999 699999999999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceE
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l 385 (927)
+.++++...+..| ...+.+++|+|++ ..++++. .+++|+.+++++
T Consensus 253 ~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 253 KENGSLKQVITLP-AISIWSVDCMSNG----DIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTTCCEEEEEECS-SSCEEEEEECTTS----CEEEEETTSCEEEEESCGGGC
T ss_pred CCCCceeEEEecc-CceEEEEEEccCC----CEEEEeCCCcEEEEeCCCCce
Confidence 9999999999887 6789999999987 5443332 788888776544
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.93 E-value=1.8e-23 Score=240.58 Aligned_cols=306 Identities=11% Similarity=0.132 Sum_probs=238.3
Q ss_pred eEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEE
Q 002405 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (927)
Q Consensus 134 ~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (927)
.+.++.++++.+++|+.||.|++|++.... .. ..+.+|...|.+
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~--~~----------------------------------~~~~~h~~~v~~ 164 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGK--CL----------------------------------RTLVGHTGGVWS 164 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCC--EE----------------------------------EECCCCSSCEEE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCc--EE----------------------------------EEEcCCCCCEEE
Confidence 357888999999999999999997764321 11 112356667777
Q ss_pred EEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC
Q 002405 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
+.+ ++..+++++.|+++++|+..+++.. .+|...+ +++++ ++.+++|+.||+|++||+.+ +
T Consensus 165 ~~~------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~ 229 (445)
T 2ovr_B 165 SQM------------RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-G 229 (445)
T ss_dssp EEE------------ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-C
T ss_pred EEe------------cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-C
Confidence 664 2678999999999999998776543 6899999 99985 56799999999999999988 7
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l 369 (927)
+.+..+.+ |.++|.+++| +|..+++|+.||.|++||+.++++..++.+| ...+.++.+ ++ ..+
T Consensus 230 ~~~~~~~~--------~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l 292 (445)
T 2ovr_B 230 QCLHVLMG--------HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DG----IHV 292 (445)
T ss_dssp CEEEEEEC--------CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CS----SEE
T ss_pred cEEEEEcC--------CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CC----CEE
Confidence 78888887 9999999999 8999999999999999999999999999887 778999888 44 556
Q ss_pred cccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecC
Q 002405 370 MSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (927)
Q Consensus 370 ~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 445 (927)
++|+ ++.+|+..+++++....+|...+..+.+ ++.+++++.|+.+++|++..+.. .
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------------~ 352 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC--------------------L 352 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--------------------E
T ss_pred EEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE--------------------E
Confidence 6665 8999999999999999999999988888 88999999999999999865433 2
Q ss_pred cccc---cCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeC-CccceeeeEEEEEEeeCCEEEE-EEeecCC
Q 002405 446 VSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFG-DITQEQKIQSKGLLWLGKIIVV-CNYIDSS 518 (927)
Q Consensus 446 ~~~~---~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~-~~~~e~~~~v~~~~W~~~~li~-~~~~~~~ 518 (927)
..+. .|..+|.+++|+ ++++++|+.||.+ +||+.+++.. .+. .......-.+..+.|.++..++ ++..+..
T Consensus 353 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 2222 488899999995 7899999999999 9999988643 221 1111222347788898664443 2222222
Q ss_pred CeEEEEEeeCC
Q 002405 519 NTYELLFYPRY 529 (927)
Q Consensus 519 ~~~~l~l~~~~ 529 (927)
....+.+|+.+
T Consensus 431 ~~~~l~v~df~ 441 (445)
T 2ovr_B 431 EETKLLVLDFD 441 (445)
T ss_dssp SCCEEEEEECC
T ss_pred CccEEEEEECC
Confidence 24567888763
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-24 Score=240.65 Aligned_cols=288 Identities=13% Similarity=0.100 Sum_probs=211.0
Q ss_pred ccccceEEEe--eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC
Q 002405 129 AEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (927)
Q Consensus 129 ~~~~~~v~~i--~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (927)
.++...|+++ +++++.+++++.||.|++|+..... .. ..+..
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~----------------------------------~~~~~ 72 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RL----------------------------------GTLDG 72 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC--EE----------------------------------EEECC
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--hh----------------------------------hhhhh
Confidence 4555666665 5677889999999999987654321 11 11234
Q ss_pred CCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecC-----C
Q 002405 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRR-----G 278 (927)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~D-----g 278 (927)
|...|.++.| +|||+.+++++.|+++++|+..+++.. ..|...+ +++|+|+++++++++.+ |
T Consensus 73 h~~~v~~~~~----------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 73 HTGTIWSIDV----------DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp CSSCEEEEEE----------CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred cCCcEEEEEE----------cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 5667777665 788999999999999999998776543 3367777 99999999999999999 9
Q ss_pred eEEEEeccCCCc----------ceEEEeeecCCCCCCCCC--CeeEEEECCCCCEEEEEEcCCcEEEEEccC-CeeEEEe
Q 002405 279 VVELYDLAESAS----------LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTI 345 (927)
Q Consensus 279 ~V~vwd~~~~~~----------~~~~l~~~~~~~~~~h~~--~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~-~~~~~~l 345 (927)
.|++||+..... ....+.. |.+ .+.+++|+|||+.|++|+.||.|++||+.+ +.....+
T Consensus 143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 214 (369)
T 3zwl_B 143 SINIYEIERDSATHELTKVSEEPIHKIIT--------HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI 214 (369)
T ss_dssp EEEEEEEEECTTTCCEEEECSSCSEEEEC--------CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE
T ss_pred EEEEEEecCCccceeecccccceeeeccC--------CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE
Confidence 999999986221 2223333 665 999999999999999999999999999988 7888888
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQV 419 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~ 419 (927)
..| ...|.+++|+|++ ..+++++ .+.+|+..++++..... +...+ ..+++ ++.+++++.++...++..
T Consensus 215 ~~~-~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 288 (369)
T 3zwl_B 215 DLH-EKSISDMQFSPDL----TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTT 288 (369)
T ss_dssp ECC-SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------
T ss_pred ecC-CCceeEEEECCCC----CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEE
Confidence 887 7889999999998 7777665 89999999988877776 44555 44555 888888888874333332
Q ss_pred eecCC--eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 420 IYGED--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 420 ~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
..... .+.++.... .+....+.+|..+|.+++|+|||++||+|+.||.+ +|++.++.
T Consensus 289 ~~~~~~~~i~~~d~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 289 SANEGKFEARFYHKIF--------EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ------CEEEEEETTT--------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred ecCCCcceeEEEecCC--------CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 21111 111111100 01134566899999999999999999999999999 99997754
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-24 Score=238.86 Aligned_cols=273 Identities=11% Similarity=0.148 Sum_probs=212.1
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eeccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~ 143 (927)
+.+.+.+++|+|||++||+++.||.|++|++..+.....+ .++...|.+ +.++++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----------------------DGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-----------------------CCCSSCEEEEEECTTSS
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-----------------------hhcCCcEEEEEEcCCCC
Confidence 4577899999999999999999999999997643321111 122334444 456678
Q ss_pred eEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceE
Q 002405 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (927)
Q Consensus 144 ~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (927)
.+++++.||.|.+|+.+... ... ...+...+.++.|
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~--~~~-----------------------------------~~~~~~~v~~~~~------- 123 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQ--CVA-----------------------------------TWKSPVPVKRVEF------- 123 (369)
T ss_dssp EEEEEETTTEEEEEETTTCC--EEE-----------------------------------EEECSSCEEEEEE-------
T ss_pred EEEEEeCCCeEEEEECCCCc--EEE-----------------------------------EeecCCCeEEEEE-------
Confidence 89999999999997654322 110 0113445666655
Q ss_pred EEEEeCCcEEEEeeec-----Cccceeeecccce--------------ecCCCC--eE-EEEEcCCCcEEEEEecCCeEE
Q 002405 224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDK--------------ELGSGD--AV-CASIAPEQQILAVGTRRGVVE 281 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d-----~~~~~w~~~~~~~--------------~~~h~~--~v-~v~~sp~~~~la~g~~Dg~V~ 281 (927)
+|+|+.++++..+ +.+.+|+...... ..+|.. .+ +++|+|++++|++|+.||.|+
T Consensus 124 ---~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 200 (369)
T 3zwl_B 124 ---SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200 (369)
T ss_dssp ---CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred ---ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence 6777777777777 7888887654321 134444 67 999999999999999999999
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCC
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~ 361 (927)
+||+.+....+..+.. |.++|.+++|+|||++|++++.||.|++||+.+++....+.. ...+.++.++|+
T Consensus 201 i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~ 270 (369)
T 3zwl_B 201 KYDVSNNYEYVDSIDL--------HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPL 270 (369)
T ss_dssp EEETTTTTEEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred EEECCCCcEeEEEEec--------CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence 9999874566777777 999999999999999999999999999999999888888873 577999999999
Q ss_pred CCCCcccccccc-----------------eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeee
Q 002405 362 QDCKYEPLMSGT-----------------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 362 ~~~~~~~l~sg~-----------------~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~ 421 (927)
+ ..++.+. .+.+|+..+++.+....+|...|..+.+ ++.+++++.|+++++|++..
T Consensus 271 ~----~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 271 K----EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp S----SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred C----ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 8 6665543 5889999999999999999999965555 88999999999999999865
Q ss_pred c
Q 002405 422 G 422 (927)
Q Consensus 422 ~ 422 (927)
+
T Consensus 347 ~ 347 (369)
T 3zwl_B 347 S 347 (369)
T ss_dssp H
T ss_pred c
Confidence 3
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=244.34 Aligned_cols=330 Identities=11% Similarity=0.029 Sum_probs=217.1
Q ss_pred ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcC-CccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccce
Q 002405 38 SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (927)
Q Consensus 38 ~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsp-Dg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (927)
.+.+++||+.+ ........ + .+.+.+.+++|+| |+++||+++.||.|++|++..........
T Consensus 21 ~~~~~~v~~~~-~~~~~~~~-~-----~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---------- 83 (408)
T 4a11_B 21 AESTRRVLGLE-LNKDRDVE-R-----IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT---------- 83 (408)
T ss_dssp HHHHHHHHTEE-ECTTEEEC-C-----CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE----------
T ss_pred ccCcceeeccc-cCcceeee-e-----ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe----------
Confidence 34567788774 22111111 1 1457889999999 99999999999999999997544221110
Q ss_pred eeeEEeecccccccccceEEEee--c-cCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccc
Q 002405 117 KISLVLNEQLPFAEKGLSVSNIV--S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (927)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~--~-~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 193 (927)
.............++...|.+++ + ++..+++++.||.+++|+.+......
T Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------- 136 (408)
T 4a11_B 84 CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD--------------------------- 136 (408)
T ss_dssp ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE---------------------------
T ss_pred ccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce---------------------------
Confidence 00000001111123445566654 4 45678889999999997665322111
Q ss_pred cCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce---ecCCCCeE-EEEEcCCCc
Q 002405 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQ 269 (927)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp~~~ 269 (927)
...+...+.++.+.+. ++++.+++++..++.+++|+..+++. ..+|...+ +++|+|+++
T Consensus 137 ----------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 137 ----------VFNFEETVYSHHMSPV-------STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp ----------EEECSSCEEEEEECSS-------CSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred ----------eccCCCceeeeEeecC-------CCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 0112344556555432 34677899999999999999876543 36788999 999999998
Q ss_pred -EEEEEecCCeEEEEeccCCCcceEEEeeec-------CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee
Q 002405 270 -ILAVGTRRGVVELYDLAESASLIRTVSLYD-------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (927)
Q Consensus 270 -~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~-------~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~ 341 (927)
++|+|+.||.|++||+.........+.... .....+|.+.|.+++|+|||++|++|+.||.+++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 699999999999999987433444442211 011135899999999999999999999999999999988754
Q ss_pred EEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeee
Q 002405 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 342 ~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~ 421 (927)
...+..+.. ... ..+.. ..+ .......++.++.++.+++|++..
T Consensus 280 ~~~~~~~~~---------~~~-------~~~~~-~~~-------------------~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 280 TLVNYGKVC---------NNS-------KKGLK-FTV-------------------SCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp CCCCCCCCC---------CCC-------SSCCC-CEE-------------------CCSSSSCEEEEEETTEEEEEETTT
T ss_pred ceecccccc---------ccc-------cccce-eEE-------------------ecCCCceEEEEecCCEEEEEECcC
Confidence 333222100 000 00000 000 001133445566778899999765
Q ss_pred cCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
+.. ...+.+|..+|.+++|+|+|++|++|+.||.+ +||+.+++
T Consensus 324 ~~~--------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 324 GEQ--------------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCE--------------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred Ccc--------------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 443 44567899999999999999999999999999 99998764
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=9.4e-25 Score=250.54 Aligned_cols=284 Identities=13% Similarity=0.158 Sum_probs=197.4
Q ss_pred ceEEEEEec-CeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcC-CccEEEEEecCcEEEEEEEEe
Q 002405 22 QQIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 22 ~~iv~fs~d-g~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsp-Dg~~Lav~t~dg~l~i~~l~~ 98 (927)
...|+|+|. +++||+++ |++|+|||.. ......... ...+.+.+.+|+|+| |+++|++++.||+|++||++.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 455899995 67899885 8899999985 322211111 113567899999998 789999999999999999853
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceE--EEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCC
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~ 176 (927)
.........+. ....+ .++.+++..+++|+.||.|++|+.++...
T Consensus 197 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~------------ 243 (435)
T 4e54_B 197 NILRVFASSDT---------------------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL------------ 243 (435)
T ss_dssp CEEEEEECCSS---------------------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC------------
T ss_pred CceeEEeccCC---------------------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee------------
Confidence 21111111100 01111 24567788999999999999977543211
Q ss_pred cccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeeccccee--
Q 002405 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-- 253 (927)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~-- 253 (927)
..+..|...|.++.| +|+|. ++++++.|+++++||....+..
T Consensus 244 -------------------------~~~~~h~~~v~~v~~----------~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 244 -------------------------WNLRMHKKKVTHVAL----------NPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp -------------------------CCSBCCSSCEEEEEE----------CTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred -------------------------EEEecccceEEeeee----------cCCCceEEEEecCcceeeEEecccccccce
Confidence 112346667887765 56765 6778889999999998654321
Q ss_pred ----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE--
Q 002405 254 ----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-- 326 (927)
Q Consensus 254 ----~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-- 326 (927)
.+|...| +++|+|++++||+|+.||+|++||+.+ +.....+....... .....+....|+|++..+++++
T Consensus 289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 365 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYP 365 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCC
T ss_pred EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcC
Confidence 5789999 999999999999999999999999987 66555554411100 0011233456777776666654
Q ss_pred ----------cCCcEEEEEccCCeeEEEeccccccceecc-eecCCCCCCcccccccc--eeEEEcCCCceE
Q 002405 327 ----------KSRGLTVWSVSGCRLMSTIRQISLSSISSP-IVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (927)
Q Consensus 327 ----------~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~-~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l 385 (927)
.++.|++||..+++++.++..++...|.++ +|+|++ ..+++|+ ++++|+++.++.
T Consensus 366 d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg----~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 366 DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG----DTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS----SCEEEECSSEEEECCCC----
T ss_pred CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC----CEEEEEcCCcEEEEECCcCee
Confidence 346799999999999998877657888887 699998 7788776 889999887653
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=8.5e-25 Score=237.19 Aligned_cols=239 Identities=12% Similarity=0.154 Sum_probs=184.3
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg 329 (927)
.+|.+.| +++|+|+|++||+|+.||+|+||++... .+.+.++.+ |+++|++++|+|+ |++||+|+.|+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g--------H~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc--------ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 6899999 9999999999999999999999999742 356778888 9999999999874 89999999999
Q ss_pred cEEEEEccCCe--eEEEeccccccceecceecCC--CCCCcccccccc---eeEEEcCCCce--EEEEEcCCcceEEEEe
Q 002405 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLIFS 400 (927)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~s~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~~--l~~~~~~~~~~v~~~~ 400 (927)
+|++||+.+++ ...++.+| ...|.+++|+|+ + ..+++++ ++++|+..... ......+|...|..+.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCC----cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 99999998763 45567666 788999999997 4 5677765 89999987642 1345568888886555
Q ss_pred c----------------cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC
Q 002405 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (927)
Q Consensus 401 ~----------------~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG 464 (927)
+ ++.+++++.|+++++|++..+.... .....+.+|..+|++++|+|+|
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----------------~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE----------------EEEEEecCCCCceEEEEECCCC
Confidence 4 2479999999999999987654311 0123567899999999999995
Q ss_pred ---CEEEEEeCCceE-EEEccCC--cEE--eeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeC
Q 002405 465 ---MFLAVAGLHGLI-LYDIRQK--KWR--VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 465 ---~~la~ag~dg~i-~wd~~s~--~w~--~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
++||+||.||.+ +||+.+. .|. .+....++ -.+..+.|. ++.+++++ .+..+++|..
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~las~~-----~D~~v~lw~~ 283 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP--DVLWRASWSLSGNVLALSG-----GDNKVTLWKE 283 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS--SCEEEEEECSSSCCEEEEE-----TTSCEEEEEE
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCC--CcEEEEEECCCCCEEEEEc-----CCCcEEEEEE
Confidence 899999999999 9999764 343 22111121 236678886 45666653 3356899976
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=241.47 Aligned_cols=297 Identities=11% Similarity=0.095 Sum_probs=200.4
Q ss_pred CceEEEEEecCe-EEEEEc----cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCC---ccEEEEEecCcEEE
Q 002405 21 SQQIIYFKVNNG-LLLIAS----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLYLH 92 (927)
Q Consensus 21 ~~~iv~fs~dg~-lla~~~----~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspD---g~~Lav~t~dg~l~ 92 (927)
...-++|+|+|. ++|+++ |++|+||+.. ......... ..+.+.+.+++|+|+ |+.|++++.||.|+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLRE-----IEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEE-----EEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceee-----ecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 455689999986 555553 7899999996 433222111 124577899999999 69999999999999
Q ss_pred EEEEEecC-ceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecc
Q 002405 93 IFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 93 i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~ 171 (927)
+|++..+. ....+..+.. .+.++.+.. -.++.+++..+++++.||.+++|+..........+.
T Consensus 94 iwd~~~~~~~~~~~~~~~~---~v~~~~~~~------------~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~- 157 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKE---IINAIDGIG------------GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME- 157 (357)
T ss_dssp EECTTSCSSCSEEECCCSS---CEEEEEEES------------GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-
T ss_pred EEeCCCCCccEEEEEeccc---ceEEEeecc------------ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-
Confidence 99987544 1112222211 111111000 003356778999999999999876543221111000
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID 251 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~ 251 (927)
.........+.++.|++ +++++|+.+++++.|+.+++||....+
T Consensus 158 ------------------------------~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 158 ------------------------------PVQGENKRDCWTVAFGN------AYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp ------------------------------CCTTSCCCCEEEEEEEC------CCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred ------------------------------ccCCCCCCceEEEEEEe------ccCCCCCEEEEEccCCeEEEEECccCc
Confidence 00011233566666432 257899999999999999999987765
Q ss_pred ee--cCCCCeE-EEEEcC---CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEE
Q 002405 252 KE--LGSGDAV-CASIAP---EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAV 324 (927)
Q Consensus 252 ~~--~~h~~~v-~v~~sp---~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Las 324 (927)
.. ..|...+ +++|+| +++++++|+.||.|++||+.+ +.....+.... ..+|.+.|++++|+|+|+ +|++
T Consensus 202 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~ 277 (357)
T 3i2n_A 202 LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVS---EKAHKSTVWQVRHLPQNRELFLT 277 (357)
T ss_dssp EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEE---EECCSSCEEEEEEETTEEEEEEE
T ss_pred eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeec---cCCCcCCEEEEEECCCCCcEEEE
Confidence 43 5677888 999999 999999999999999999987 54444443000 001999999999999999 8999
Q ss_pred EEcCCcEEEEEccCC-------------------eeEEEeccccccceecceecCCCCCCccccc-ccc---eeEEEcCC
Q 002405 325 GWKSRGLTVWSVSGC-------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEY 381 (927)
Q Consensus 325 g~~Dg~v~vW~~~~~-------------------~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~~~~W~~~ 381 (927)
|+.||.|++||+..+ .++.++.+| ...|++++|+|++ ..++ +++ .+++|+..
T Consensus 278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISSLDWSPDK----RGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEEEEECSSS----TTEEEEEETTSEEEEEEEC
T ss_pred EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeEEEEcCCC----CeEEEEecCCCcEEEEECC
Confidence 999999999999743 355666666 6778888888887 5555 444 67777765
Q ss_pred Cce
Q 002405 382 GYR 384 (927)
Q Consensus 382 ~~~ 384 (927)
..+
T Consensus 353 ~~~ 355 (357)
T 3i2n_A 353 KLN 355 (357)
T ss_dssp C--
T ss_pred Ccc
Confidence 543
No 83
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=7.2e-24 Score=231.14 Aligned_cols=271 Identities=15% Similarity=0.210 Sum_probs=200.9
Q ss_pred eEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 002405 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~ 102 (927)
..|++|+++ +||++.|++|+|||.. .+..+..+... .+.+.+.+++|+|||++||+|+.||.|++|+++.+...
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 468999987 8899899999999996 55444433211 13356789999999999999999999999998643321
Q ss_pred eecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccc
Q 002405 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (927)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~ 182 (927)
... .++...+.+++.++..+++++.++.+..+.........
T Consensus 103 ~~~-----------------------~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~---------------- 143 (318)
T 4ggc_A 103 RNM-----------------------TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV---------------- 143 (318)
T ss_dssp EEE-----------------------ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE----------------
T ss_pred EEe-----------------------cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE----------------
Confidence 111 22334556777788889999999988776443221110
Q ss_pred cccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-------cC
Q 002405 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LG 255 (927)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-------~~ 255 (927)
.....+...+..+ .+.++|+.+++++.|+++++||..+++.. ..
T Consensus 144 -------------------~~~~~~~~~~~~~----------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 144 -------------------ATLSGHSQEVCGL----------RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp -------------------EEEECCSSCEEEE----------EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred -------------------EEEcCccCceEEE----------EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 0112334445444 45789999999999999999998765321 56
Q ss_pred CCCeE-EEEEcCCCc---EEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE--cCC
Q 002405 256 SGDAV-CASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR 329 (927)
Q Consensus 256 h~~~v-~v~~sp~~~---~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~--~Dg 329 (927)
|...+ +++++|++. .+++|+.+++|++|+... ..... ... +...|..+.|+|++..+++++ .|+
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS-AVD--------AHSQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEE-EEE--------CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-ccccc-ccc--------ceeeeeeeeecccccceEEEEEcCCC
Confidence 77788 999999765 345778899999999876 44333 233 678899999999999887765 789
Q ss_pred cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCC
Q 002405 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (927)
.|++||+.+++++.++++| .+.|++++|+|++ ..++||+ ++++|+...
T Consensus 265 ~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCSC
T ss_pred EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECCC
Confidence 9999999999999999998 8899999999998 6777665 677777643
No 84
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=1.1e-24 Score=239.78 Aligned_cols=265 Identities=14% Similarity=0.067 Sum_probs=194.9
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc----e---ecCCCCeE-EEEEcC--CCcEEEE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----K---ELGSGDAV-CASIAP--EQQILAV 273 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~----~---~~~h~~~v-~v~~sp--~~~~la~ 273 (927)
+.+|...|.++.| +|||+++++++.|+++++|+..... . +.+|...+ +++|+| ++++||+
T Consensus 7 ~~gH~~~v~~~~~----------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 7 DSGHDDLVHDVVY----------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp ECCCSSCEEEEEE----------CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred CcccccceeEEEE----------cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 3567888988776 7889999999999999999987542 1 25899999 999999 6999999
Q ss_pred EecCCeEEEEeccCCC--------cceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCCeeEE
Q 002405 274 GTRRGVVELYDLAESA--------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMS 343 (927)
Q Consensus 274 g~~Dg~V~vwd~~~~~--------~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~~~~~ 343 (927)
|+.||+|++||+.... .....+.. |.++|.+++|+|+ |.+|++|+.||.|++||+.+++...
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLND--------SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecc--------cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 9999999999998621 33555555 9999999999999 9999999999999999997765443
Q ss_pred Eec------------cccccceecceecCCCCCCcccccccc---eeEEEcCCCceE--EEEEcCCcceEEEEec---c-
Q 002405 344 TIR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLIFSF---G- 402 (927)
Q Consensus 344 ~l~------------~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l--~~~~~~~~~~v~~~~~---~- 402 (927)
.+. ..+...+.++.|+|+... ...++++. .+..|....++. +....+|...|..+.+ +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS-PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG 227 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS-CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred cccccccccccccccCCcccceeEEEeccCCCC-CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence 322 122567889999987211 15555554 666676666654 6667789888865555 4
Q ss_pred ---ceeeecccCCCeeeeeeeecCCeEEEeecCCC--------------------C----cceE--EEeecCcccccCCC
Q 002405 403 ---KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--------------------D----ELKI--LHLNLPVSYISQNW 453 (927)
Q Consensus 403 ---~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~--------------------~----~~~w--~~~~~~~~~~~~~~ 453 (927)
+.+++++.|+++++|++..+............ . ...| ...+....+.+|..
T Consensus 228 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 228 RWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp CSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred CcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 68999999999999999875432211110000 0 0001 12233456678999
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCC-cEEe
Q 002405 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRV 487 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag~dg~i-~wd~~s~-~w~~ 487 (927)
+|++++|+|+|++||+|+.||.+ +|++.++ .|+.
T Consensus 308 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 99999999999999999999999 9999875 3443
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=6.8e-25 Score=240.28 Aligned_cols=201 Identities=16% Similarity=0.094 Sum_probs=157.8
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSR 329 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg 329 (927)
.+|.+.| +++|+|+|++||+|+.|++|+|||+.+.. ..+..+.+ |.++|++++|+| +|++||+|+.|+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g--------H~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG--------HEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC--------CCccEEEEEeCCCCCCCEEEEEECCC
Confidence 6899999 99999999999999999999999998622 24567777 999999999986 499999999999
Q ss_pred cEEEEEccCC--eeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceE---EEEEcCCcceEEEEe-
Q 002405 330 GLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIEEGSSERVLIFS- 400 (927)
Q Consensus 330 ~v~vW~~~~~--~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l---~~~~~~~~~~v~~~~- 400 (927)
+|++||+.++ ....++.+| ...|.+++|+|+. ....+++|+ ++++|+..+... .....+|...+..+.
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred EEEEEECCCCcceEEEEccCC-CCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 9999999876 356677777 7889999999983 116777776 899999876532 234456776663333
Q ss_pred -c------------------cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEc
Q 002405 401 -F------------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (927)
Q Consensus 401 -~------------------~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s 461 (927)
+ ++.+++++.|+++++|++..+.. |. ....+.+|..+|++++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------------~~---~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------------WK---EEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------------EE---EEECCBCCSSCEEEEECC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------------cc---eeeecccCCCceEEEEec
Confidence 3 25789999999999999753321 00 123567899999999999
Q ss_pred cCC----CEEEEEeCCceE-EEEccC
Q 002405 462 KDG----MFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 462 pdG----~~la~ag~dg~i-~wd~~s 482 (927)
|++ ++||+|+.||.+ +|++.+
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccC
Confidence 997 899999999999 999865
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=8.6e-25 Score=243.25 Aligned_cols=290 Identities=13% Similarity=0.168 Sum_probs=216.5
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCC-cEEEEeeecCccceeeeccccee--------cCCCCeE-EEEEcCC----CcE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAV-CASIAPE----QQI 270 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG-~~~~~~~~d~~~~~w~~~~~~~~--------~~h~~~v-~v~~sp~----~~~ 270 (927)
.+|...|.++.|+|. ++|| ..++++..++.+++|+..+.+.. ..|...+ +++|+|+ +++
T Consensus 15 ~~h~~~v~~i~~~p~-------~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 15 EDHNQPLFGVQFNWH-------SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp CTTCSCEEEEEECTT-------CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred cCCCCceEEEEEecc-------cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 367888999888653 1223 34555555667888887754332 2366778 9999999 779
Q ss_pred EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEe---c
Q 002405 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI---R 346 (927)
Q Consensus 271 la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l---~ 346 (927)
||+|+.||+|++||+.+ ++.+..+.+ |.++|++++|+| ++++|++|+.||.|++||+.+++....+ .
T Consensus 88 l~~~~~dg~i~v~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 158 (366)
T 3k26_A 88 LAVAGSRGIIRIINPIT-MQCIKHYVG--------HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158 (366)
T ss_dssp EEEEETTCEEEEECTTT-CCEEEEEES--------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred EEEecCCCEEEEEEchh-ceEeeeecC--------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence 99999999999999987 778888887 999999999999 9999999999999999999999888888 4
Q ss_pred cccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEE----------------------------EEcCCcce
Q 002405 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA----------------------------IEEGSSER 395 (927)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~----------------------------~~~~~~~~ 395 (927)
+| ...|.+++|+|++ ..+++++ .+.+|+..+++... ...+|...
T Consensus 159 ~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 159 GH-RDEVLSADYDLLG----EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp SC-SSCEEEEEECTTS----SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred cc-cCceeEEEECCCC----CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 55 7889999999998 7777765 89999998765432 22337788
Q ss_pred EEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC--CCEEEEEeC
Q 002405 396 VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMFLAVAGL 472 (927)
Q Consensus 396 v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd--G~~la~ag~ 472 (927)
|..+.+ ++.+++++.|+.+++|++......+....... ........+.+|..+|.+++|+|+ |++||+|+.
T Consensus 234 v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 234 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTC------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCC------cchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 866666 88999999999999999876543110000000 001123445678889999999999 999999999
Q ss_pred CceE-EEEccCCcE-----EeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeC
Q 002405 473 HGLI-LYDIRQKKW-----RVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 473 dg~i-~wd~~s~~w-----~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
||.+ +||+.+++. ..+.. +.....+..++|. ++.+++++ .+..+++|+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~ 364 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTH--HKCGAAIRQTSFSRDSSILIAVC-----DDASIWRWDR 364 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECC--TTCCSCEEEEEECTTSSEEEEEE-----TTSEEEEEEC
T ss_pred CCcEEEEECCCCCCccccceEEcc--cccCCceEEEEeCCCCCeEEEEe-----CCCEEEEEEe
Confidence 9999 999988642 12222 2112347788886 55677663 3457899975
No 87
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=5.2e-24 Score=239.60 Aligned_cols=274 Identities=15% Similarity=0.130 Sum_probs=200.6
Q ss_pred hcccccEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe--ec-c
Q 002405 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-D 141 (927)
Q Consensus 66 ~~G~~~~v~wspDg-~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~-~ 141 (927)
+.+.+.+++|+||+ ++||+++.||.|++|++..+....... ..++...|.++ .+ +
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---------------------GMGPGDAITGMKFNQFN 130 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---------------------CCSTTCBEEEEEEETTE
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---------------------cCCcCCceeEEEeCCCC
Confidence 34778999999999 999999999999999987443221111 11233345554 44 4
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcc
Q 002405 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (927)
Q Consensus 142 ~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (927)
+..+++++.||.|++|+.++...... .....+...|.++.|
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~----- 171 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVF----------------------------------AKTDSWDYWYCCVDV----- 171 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEE----------------------------------ECCCCSSCCEEEEEE-----
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEE----------------------------------eccCCCCCCeEEEEE-----
Confidence 57888999999999977653211111 011123355666554
Q ss_pred eEEEEEeCCcEEEEeeecCccceeeecccc--eecCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCC---CcceEE
Q 002405 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAES---ASLIRT 294 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--~~~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~---~~~~~~ 294 (927)
+|||+.+++++.|+.+++||..... .+.+|...+ +++|+|+++ ++++|+.||+|++||+.+. +..+..
T Consensus 172 -----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 172 -----SVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp -----ETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred -----CCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence 7899999999999999999974221 226899999 999999999 9999999999999999862 223333
Q ss_pred EeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEecccc------c----------cceecce
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS------L----------SSISSPI 357 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~------~----------~~v~s~~ 357 (927)
+ . |.+.|++++|+| ||++|++++.|+.|++||+.++....++.+|. . ..+..++
T Consensus 247 ~-~--------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 247 M-P--------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp E-E--------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred e-c--------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEE
Confidence 3 5 899999999999 99999999999999999998877666665441 1 1233356
Q ss_pred ecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCC--cceE--EEEec-cceeeecccCCCeeeeeee
Q 002405 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSGMTYARQVI 420 (927)
Q Consensus 358 ~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~--~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~ 420 (927)
++|++ .. +|+ ++.+|+..+++++..+.+| ...+ +++++ ++.+++++ |+.+++|++.
T Consensus 318 ~s~dg----~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 318 RYPDD----QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CBCCT----TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred ecCCc----cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 66665 33 443 8999999999998888763 3444 46777 88888887 9999999975
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.93 E-value=7.6e-24 Score=241.76 Aligned_cols=234 Identities=17% Similarity=0.187 Sum_probs=188.7
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
.++...|++++| +|||+++++++.|+++++|+..+++.. .+|...+ ++++ ++.+|++|+.|+++
T Consensus 144 ~~~~~~V~sv~f----------spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i 211 (420)
T 4gga_A 144 EQPGEYISSVAW----------IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHI 211 (420)
T ss_dssp CSTTCCEEEEEE----------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred cCCCCcEEEEEE----------CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCce
Confidence 345667888765 789999999999999999998876554 7888888 7766 56799999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe----eEEEeccccccceecc
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSP 356 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~----~~~~l~~~~~~~v~s~ 356 (927)
++||.......+.++.+ |.+.+..+.|+|+|+++++++.|+.+++|+...++ .......| ...|.++
T Consensus 212 ~~~d~~~~~~~~~~~~~--------h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~ 282 (420)
T 4gga_A 212 HHHDVRVAEHHVATLSG--------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAV 282 (420)
T ss_dssp EEEETTSSSCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCEEEE
T ss_pred eEeeecccceeeEEecc--------cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc-CCceeee
Confidence 99999875566777777 99999999999999999999999999999997654 23455555 7789999
Q ss_pred eecCCCCCCccccc--ccc---eeEEEcCCCceEEEEEcCCcceE-EEEec-cceeee--cccCCCeeeeeeeecCCeEE
Q 002405 357 IVKPNQDCKYEPLM--SGT---SMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLL 427 (927)
Q Consensus 357 ~~sp~~~~~~~~l~--sg~---~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~~s--~s~d~~~~~w~~~~~~~~~~ 427 (927)
+|+|.+. ..++ +|+ ++++|+..++++......|.... ..+.+ ++.+++ |+.|+++++|++..+..
T Consensus 283 ~~~p~~~---~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~--- 356 (420)
T 4gga_A 283 AWCPWQS---NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--- 356 (420)
T ss_dssp EECTTCT---TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE---
T ss_pred eeCCCcc---cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE---
Confidence 9999862 3333 333 89999999999888877655433 44444 666654 44799999999765443
Q ss_pred EeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
...+.+|..+|++++|||||++||+||.||++ +||+..
T Consensus 357 -----------------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 357 -----------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp -----------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -----------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 45677999999999999999999999999999 999864
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.5e-24 Score=230.25 Aligned_cols=271 Identities=13% Similarity=0.159 Sum_probs=215.2
Q ss_pred ccccceEEEee-ccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCC
Q 002405 129 AEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (927)
Q Consensus 129 ~~~~~~v~~i~-~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (927)
.++.+.|++++ ++++.+++++.||.|++|+.+..... .....+
T Consensus 15 ~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~------------------------------------~~~~~~ 58 (313)
T 3odt_A 15 KGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLG------------------------------------TVVYTG 58 (313)
T ss_dssp CCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEE------------------------------------EEEEEC
T ss_pred hCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEE------------------------------------EEeecC
Confidence 44455666554 56788999999999999776432111 011234
Q ss_pred CccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc------eecCCCCeE-EEEEcCCCcEEEEEecCCeE
Q 002405 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (927)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V 280 (927)
...|.++. ++|+|+.+++++.|+.+++|+..... ...+|...+ +++| +++++++|+.||+|
T Consensus 59 ~~~v~~~~----------~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 59 QGFLNSVC----------YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp SSCEEEEE----------EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CccEEEEE----------ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 55666665 47899999999999999988865432 226788888 9998 67799999999999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceec
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~s 359 (927)
++|| . +.....+.. |.++|.+++|+| ++..+++++.||.+++|| .+.....+...+...+.+++++
T Consensus 127 ~~~d--~-~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~ 193 (313)
T 3odt_A 127 KVWK--E-GSLVYNLQA--------HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV 193 (313)
T ss_dssp EEEE--T-TEEEEEEEC--------CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE
T ss_pred EEEc--C-CcEEEeccc--------CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEc
Confidence 9999 3 567777777 999999999998 999999999999999999 4566777777448889999999
Q ss_pred CCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
|++ . +++++ .+.+|+..+++++....+|...+..+.+ ...+++++.|+.+++|++..+..
T Consensus 194 ~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---------- 258 (313)
T 3odt_A 194 DDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL---------- 258 (313)
T ss_dssp ETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE----------
T ss_pred CCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce----------
Confidence 997 5 55554 8999999999999999999999966665 33689999999999999866543
Q ss_pred CcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002405 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~ 486 (927)
...+..|..+|.+++|+|+|+ +++++.||.+ +|++.++++.
T Consensus 259 ----------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 259 ----------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp ----------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ----------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 345567888999999999999 5569999999 9999988754
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-23 Score=239.71 Aligned_cols=264 Identities=9% Similarity=0.088 Sum_probs=198.9
Q ss_pred cCCCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeecc---cce----e-cCCCCeE-EEEEcCCCcEEEEE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIK---IDK----E-LGSGDAV-CASIAPEQQILAVG 274 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~---~~~----~-~~h~~~v-~v~~sp~~~~la~g 274 (927)
.+|...|.++.| +| ||+++++++.|+++++|+..+ ... . .+|...| +++|+|++++||+|
T Consensus 60 ~~h~~~V~~~~~----------s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 60 ENEPNSITSSAV----------SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp TTTTSCEEEEEE----------ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCceEEEEE----------CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence 456677777664 78 999999999999999999866 221 1 3688999 99999999999999
Q ss_pred ecCCeEEEEeccC--CCcceEEEeeec---CCCCC-CCCCCeeEEE--ECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 275 TRRGVVELYDLAE--SASLIRTVSLYD---WGYSM-DDTGPVSCIA--WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 275 ~~Dg~V~vwd~~~--~~~~~~~l~~~~---~~~~~-~h~~~V~~l~--~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
+.||+|++||++. .+.....+.... ....+ ++.+.+.++. ++||+..|++|+.||.|++||+.+++++.++.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999999951 144444333211 00011 1566788887 77899999999999999999999999999998
Q ss_pred cc-cccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEc-CCcceEEEE----ec---cceeeecccCCCe
Q 002405 347 QI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERVLIF----SF---GKCCLNRGVSGMT 414 (927)
Q Consensus 347 ~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~-~~~~~v~~~----~~---~~~~~s~s~d~~~ 414 (927)
++ +...|++++|+|++ ..+++|+ ++++|+...++++.... +|...|..+ .+ ++.+++++.|+++
T Consensus 210 ~~~h~~~v~~~~~s~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 210 NSPRHGAVSSICIDEEC----CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CCGGGCCEEEEEECTTS----CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred cCCCCCceEEEEECCCC----CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 83 37899999999998 7888776 79999999999988875 777788666 33 5689999999999
Q ss_pred eeeeeeecCCeEEEeecCCC--CcceEEEee---cCccccc--CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 415 YARQVIYGEDRLLVVQSEDT--DELKILHLN---LPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~--~~~~w~~~~---~~~~~~~--~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
++|++..+.. +..+.+... ....|.... ....+.+ |..+|++++|+ +|++|++||.||.+ +||+.+++
T Consensus 286 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 286 TIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp EEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred EEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 9999865443 222222211 111111000 0112334 88899999999 88999999999999 99998875
No 91
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=4e-24 Score=241.73 Aligned_cols=268 Identities=13% Similarity=0.046 Sum_probs=171.6
Q ss_pred EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEE
Q 002405 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (927)
Q Consensus 137 ~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (927)
+..+++..++.++.|++|++|+.+........ ....+.+|...|.+++|
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~-------------------------------~~~~~~gH~~~v~~v~~ 144 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQH-------------------------------VLGGKSGHHNFVNDIDI 144 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEE-------------------------------EECTTTSCSSCEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceee-------------------------------eecccCCCCCceEEEEE
Confidence 34455667888999999999765432211110 01234578889999988
Q ss_pred ccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcc
Q 002405 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASL 291 (927)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~ 291 (927)
+|.... ....||+++++++.|+++++||..+.... .+|...+ +++|+|++. +||+|+.||+|++||+.+ +..
T Consensus 145 ~p~~~~--~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~ 221 (393)
T 4gq1_A 145 ADVYSA--DNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLS 221 (393)
T ss_dssp EEEECT--TCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC-
T ss_pred cccccc--ccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Ccc
Confidence 552210 01248999999999999999998765432 5677777 999999874 899999999999999987 432
Q ss_pred eEEEeeec--------------C---CCCCCCCCCeeEEEEC-CCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccce
Q 002405 292 IRTVSLYD--------------W---GYSMDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (927)
Q Consensus 292 ~~~l~~~~--------------~---~~~~~h~~~V~~l~~s-pdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (927)
........ . ....+|...|.+++|+ |||+.|++++.|+++++||+..+.....+..| ...+
T Consensus 222 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~ 300 (393)
T 4gq1_A 222 AEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKL 300 (393)
T ss_dssp ---------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------
T ss_pred cccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCcc
Confidence 22111100 0 0123588999999997 79999999999999999999888877777766 5566
Q ss_pred ecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeec
Q 002405 354 SSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (927)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~ 431 (927)
..+.+.|+. ....... ....|.+... +..+++|+.|+++++|++..+..
T Consensus 301 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------------------~~~~~sgs~Dg~V~lwd~~~~~~------- 351 (393)
T 4gq1_A 301 GPKNLLPNV----QGISLFPSLLGACPHPRYM------------------DYFATAHSQHGLIQLINTYEKDS------- 351 (393)
T ss_dssp ---CCSCSE----EEECSSCCSSCCEECSSCT------------------TEEEEEETTTTEEEEEETTCTTC-------
T ss_pred ccEEEcccc----ccccccCcceeEEEccCCC------------------CEEEEEECCCCEEEEEECCCCcE-------
Confidence 666666664 2211111 0111111100 33567889999999999876654
Q ss_pred CCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEcc
Q 002405 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (927)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~ 481 (927)
.....+|..+|++++|||||++||+|+.+|.++|.+.
T Consensus 352 -------------~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 352 -------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp -------------CEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred -------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 3445678889999999999999999999998888764
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.92 E-value=6.5e-24 Score=243.46 Aligned_cols=273 Identities=14% Similarity=0.197 Sum_probs=215.1
Q ss_pred ccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCcc
Q 002405 131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (927)
Q Consensus 131 ~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (927)
....|.|++.+++.+++|+.||.|++|+.... ... ..+.+|...
T Consensus 132 ~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~----------------------------------~~~~~h~~~ 175 (435)
T 1p22_A 132 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECK----------------------------------RILTGHTGS 175 (435)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEE----------------------------------EEECCCSSC
T ss_pred CCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEE----------------------------------EEEcCCCCc
Confidence 34568899999999999999999999765421 111 112345666
Q ss_pred EEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEecc
Q 002405 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (927)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~ 286 (927)
|.++. .||+.+++++.|+++++|+..+++.. .+|...+ +++|++ ..+++|+.||+|++||+.
T Consensus 176 v~~l~------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 176 VLCLQ------------YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp EEEEE------------CCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECS
T ss_pred EEEEE------------ECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC
Confidence 76654 37889999999999999998876543 6899999 999975 599999999999999998
Q ss_pred CCCcce---EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCC
Q 002405 287 ESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (927)
Q Consensus 287 ~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~ 363 (927)
+ +... ..+.+ |.+.|.+++| +|++|++|+.||.|++||+.+++++.++.+| ...+.++.++ +
T Consensus 242 ~-~~~~~~~~~~~~--------~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~- 306 (435)
T 1p22_A 242 S-PTDITLRRVLVG--------HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--D- 306 (435)
T ss_dssp S-SSCCEEEEEECC--------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--T-
T ss_pred C-CCCceeeeEecC--------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--C-
Confidence 7 4443 44455 9999999999 8899999999999999999999999999887 7788888884 3
Q ss_pred CCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceE
Q 002405 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (927)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (927)
..+++|+ ++++|+..+++++....+|...|..+.+ ++.+++++.|+++++|++..+.... ....
T Consensus 307 ---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~------~~~~--- 374 (435)
T 1p22_A 307 ---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR------APAG--- 374 (435)
T ss_dssp ---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT------SCTT---
T ss_pred ---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc------cccc---
Confidence 4566655 8999999999999999999999999988 8899999999999999987654210 0000
Q ss_pred EEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
......+.+|..+|.+++| ||++|++||.||.+ +||+.++.
T Consensus 375 --~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 375 --TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp --TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred --chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 0012345689999999999 89999999999999 99997754
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=9.8e-24 Score=236.00 Aligned_cols=276 Identities=8% Similarity=0.028 Sum_probs=192.8
Q ss_pred eEEEEEeCCcEEEEeeecC-------ccceeeecccce-------------ecCCCCeE-EEEEcCCCcEEEEE------
Q 002405 222 LLFVLYSNGQLMSCSVSKK-------GLKLAEFIKIDK-------------ELGSGDAV-CASIAPEQQILAVG------ 274 (927)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~-------~~~~w~~~~~~~-------------~~~h~~~v-~v~~sp~~~~la~g------ 274 (927)
+.++|+|||+++++|+.+. .+++|+...... +.+|.+++ +++++ ++.+++|
T Consensus 18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCcc
Confidence 3455699999999987654 378998653321 24677777 77654 4556655
Q ss_pred -----ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE--cCCcEEEEEccCCeeEEEecc
Q 002405 275 -----TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 275 -----~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~--~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
+.|+++|+|++......+......+......+...+.+++|||||++||+|+ .|++|+|||+.++++..++.
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~- 174 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE- 174 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-
Confidence 4578899999876444444333333323334567799999999999987654 78999999999999888886
Q ss_pred ccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEE--EEcCCcceEEE--Eec-cceeeecccCCC----eee
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYA--IEEGSSERVLI--FSF-GKCCLNRGVSGM----TYA 416 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~--~~~~~~~~v~~--~~~-~~~~~s~s~d~~----~~~ 416 (927)
| ...|.+++|+|++ ..+++++ .+.+|+..+++... ...+|...+.. +++ ++.+++++.|+. ++.
T Consensus 175 ~-~~~V~~v~fspdg----~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 175 T-RGEVKDLHFSTDG----KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp C-SSCCCEEEECTTS----SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred C-CCceEEEEEccCC----ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 3 5679999999999 7887766 55566555444433 33567777744 444 888899888873 556
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeCCccce
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQE 494 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e 494 (927)
|++....... .....+.+|..+|++++|||||++||+|+.||.+ +||+.+++-. .+.. .|.
T Consensus 250 ~~~~~~~~~~----------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~ 312 (365)
T 4h5i_A 250 ISIKSGNTSV----------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHS 312 (365)
T ss_dssp EEEETTEEEE----------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSS
T ss_pred cccccceecc----------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-ccc
Confidence 6654332211 0123456788999999999999999999999999 9999988642 3322 222
Q ss_pred eeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 495 QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 495 ~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
..|.+++|. +.+|++| +.+..+|+|+..
T Consensus 313 --~~V~~v~fSpdg~~laS~-----S~D~tvrvw~ip 342 (365)
T 4h5i_A 313 --FAITEVTISPDSTYVASV-----SAANTIHIIKLP 342 (365)
T ss_dssp --SCEEEEEECTTSCEEEEE-----ETTSEEEEEECC
T ss_pred --CCEEEEEECCCCCEEEEE-----eCCCeEEEEEcC
Confidence 347788886 4567766 245689999873
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4e-23 Score=234.16 Aligned_cols=273 Identities=15% Similarity=0.209 Sum_probs=201.8
Q ss_pred EEecC-eEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeec
Q 002405 27 FKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (927)
Q Consensus 27 fs~dg-~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~ 105 (927)
+++++ .+++++.+++|+||+.. .+........ .+.+.+.+++|+|||++|++++.||.|++|++..+.....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~-~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 171 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNAD-SGSVSALAET-----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT- 171 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETT-TCCEEEEEEC-----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EeecCCCEEEEECCCeEEEeeCC-CCcEeEeeec-----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-
Confidence 45444 46666679999999996 5444333322 1356788999999999999999999999999864321111
Q ss_pred CCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccccccc
Q 002405 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (927)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~ 185 (927)
+.++...|.+++.++..+++++.+|.|.+|+....... .
T Consensus 172 ----------------------~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~------------------ 210 (401)
T 4aez_A 172 ----------------------MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ-I------------------ 210 (401)
T ss_dssp ----------------------ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-E------------------
T ss_pred ----------------------ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce-e------------------
Confidence 12344567788888899999999999998765421111 1
Q ss_pred CCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-E
Q 002405 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-C 261 (927)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~ 261 (927)
.....+...|.++.| +|||+.+++++.|+.+++||..+.+.. .+|...+ +
T Consensus 211 ----------------~~~~~~~~~v~~~~~----------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 211 ----------------GTLQGHSSEVCGLAW----------RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp ----------------EEEECCSSCEEEEEE----------CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred ----------------eEEcCCCCCeeEEEE----------cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 112345666777665 789999999999999999998765443 6788899 9
Q ss_pred EEEcCCC-cEEEEEe--cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE--cCCcEEEEEc
Q 002405 262 ASIAPEQ-QILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSV 336 (927)
Q Consensus 262 v~~sp~~-~~la~g~--~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~--~Dg~v~vW~~ 336 (927)
++|+|++ .++++|+ .||.|++||+.+ +..+..+. |.+.|.+++|+|+|+.|++++ .||.|++|++
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 9999975 5777765 799999999987 76666664 567899999999999999954 8999999999
Q ss_pred cCCeeEE--EeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEE
Q 002405 337 SGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI 388 (927)
Q Consensus 337 ~~~~~~~--~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~ 388 (927)
.++.... .+.+| ...|.+++|+|++ ..+++++ ++++|+..+++.+..
T Consensus 335 ~~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 335 SSSGLTKQVDIPAH-DTRVLYSALSPDG----RILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ETTEEEEEEEEECC-SSCCCEEEECTTS----SEEEEECTTSEEEEEECCC------
T ss_pred CCccceeEEEecCC-CCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCccccc
Confidence 8865544 35566 7789999999998 7777665 788898877765443
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=235.19 Aligned_cols=247 Identities=16% Similarity=0.127 Sum_probs=196.0
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeec--ccce---ecCCCCeE-EEEEcCC--CcEEEEEe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAV-CASIAPE--QQILAVGT 275 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~--~~~~---~~~h~~~v-~v~~sp~--~~~la~g~ 275 (927)
+.+|...|.++.| +|||+++++++.|+.+++|+.. +.+. +.+|...| +++|+|+ +++||+|+
T Consensus 7 ~~~h~~~v~~~~~----------s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 7 ANAHNELIHDAVL----------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp EEECCCCEEEEEE----------CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ecCCcccEEEEEE----------cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 3467778888765 7899999999999999999986 3322 36899999 9999987 99999999
Q ss_pred cCCeEEEEeccCCCc--ceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCCe--eEEEecccc
Q 002405 276 RRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQIS 349 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~~--~~~~l~~~~ 349 (927)
.||+|++||+.+ +. ....+.. |.++|.+++|+|+ |..|++|+.||.|++||+..+. ....+..|
T Consensus 77 ~dg~v~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~- 146 (379)
T 3jrp_A 77 YDGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH- 146 (379)
T ss_dssp TTSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC-
T ss_pred cCCEEEEEEcCC-CceeEeeeecC--------CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC-
Confidence 999999999987 54 4555555 8999999999999 9999999999999999997763 33455556
Q ss_pred ccceecceecCC-------------CCCCcccccccc---eeEEEcCCCc----eEEEEEcCCcceEEEEec------cc
Q 002405 350 LSSISSPIVKPN-------------QDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GK 403 (927)
Q Consensus 350 ~~~v~s~~~sp~-------------~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v~~~~~------~~ 403 (927)
...|.+++|+|. + ..+++++ .+++|+..+. .+.....+|...|..+.+ ++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TTCEEEEEECCCC----------CTT----CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCceEEEEEcCccccccccccCCCCC----CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 788999999994 4 6676665 8999998654 355677789888865555 36
Q ss_pred eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc-
Q 002405 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR- 481 (927)
Q Consensus 404 ~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~- 481 (927)
.+++++.|+.+++|++..+..... ........|..+|.+++|+|+|++||+++.||.+ +|++.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWK---------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCE---------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eEEEEeCCCEEEEEeCCCCCccce---------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 789999999999999876542100 0012234578899999999999999999999999 99997
Q ss_pred CCcEEeeC
Q 002405 482 QKKWRVFG 489 (927)
Q Consensus 482 s~~w~~f~ 489 (927)
.++|..+.
T Consensus 288 ~~~~~~~~ 295 (379)
T 3jrp_A 288 EGKWEPAG 295 (379)
T ss_dssp TTEEEEEE
T ss_pred CCcccccc
Confidence 45666544
No 96
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=5.1e-23 Score=232.24 Aligned_cols=285 Identities=11% Similarity=0.051 Sum_probs=211.8
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEE--eecc--
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD-- 141 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~~-- 141 (927)
+.+.+.+++|+| ++|++++.||.|++|++......... ..+. . +..+...|.+ +.++
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~-------~~~~----~------~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-------DKSY----S------HFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-------GGEE----E------EECCTTCEEEEEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC-------Ccce----E------EecCCCcEEEEEEecccc
Confidence 457889999999 79999999999999999754411000 0000 0 1122334444 3455
Q ss_pred --C---CeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCC-----CccE
Q 002405 142 --N---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI-----SSAI 211 (927)
Q Consensus 142 --~---~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~i 211 (927)
+ ..+++++.||.|++|+.+........ .......+ ...|
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v 124 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKV-------------------------------IFEKLDLLDSDMKKHSF 124 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCE-------------------------------EEEEECCSCTTGGGSCE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccc-------------------------------cceeecccccccCCCcE
Confidence 6 78889999999999776532210000 00011122 3567
Q ss_pred EEEEEccCcceEEEEE----eCCcE-EEEeeecCccceeeecc------cce--------e-------cCCCCeE-EEEE
Q 002405 212 IWLELCLPMRLLFVLY----SNGQL-MSCSVSKKGLKLAEFIK------IDK--------E-------LGSGDAV-CASI 264 (927)
Q Consensus 212 ~~i~~~~~~~~~~~~s----~dG~~-~~~~~~d~~~~~w~~~~------~~~--------~-------~~h~~~v-~v~~ 264 (927)
.++.| + |+|+. +++++.|+.+++|+... .+. + ..|...+ +++|
T Consensus 125 ~~~~~----------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 125 WALKW----------GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp EEEEE----------ECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred EEEEE----------eeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 77665 6 78888 88889999999998876 322 2 2367778 9999
Q ss_pred cCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC---CCCeeEEEECCCCCEEEEEEcC---CcEEEEEccC
Q 002405 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD---TGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSG 338 (927)
Q Consensus 265 sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h---~~~V~~l~~spdg~~Lasg~~D---g~v~vW~~~~ 338 (927)
+|++ ++++|+.||.|++||+.+ +..+..+... .+| .++|.+++|+|||++|++|+.| |.|++||+.+
T Consensus 195 ~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 195 SERG-LIATGFNNGTVQISELST-LRPLYNFESQ-----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CTTS-EEEEECTTSEEEEEETTT-TEEEEEEECC-----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred CCCc-eEEEEeCCCcEEEEECCC-CceeEEEecc-----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 9999 999999999999999987 6666666541 126 8899999999999999999999 9999999999
Q ss_pred CeeEEEecc-------------ccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEc------CC----
Q 002405 339 CRLMSTIRQ-------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE------GS---- 392 (927)
Q Consensus 339 ~~~~~~l~~-------------~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~------~~---- 392 (927)
++.+..+.+ | ...|.+++|+|++ ..+++++ ++++|+..+++++.... +|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp CCEEEEECBC--------CCBSB-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred CcccceeccCccccccccccccc-CCcEEEEEECCCC----CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 999999987 6 7889999999998 7787776 89999999999999988 77
Q ss_pred -----------cceEEEEec---c----------ceeeecccCCCeeeeeeeec
Q 002405 393 -----------SERVLIFSF---G----------KCCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 393 -----------~~~v~~~~~---~----------~~~~s~s~d~~~~~w~~~~~ 422 (927)
...|..+.+ + +.+++++.|+.+++|++..+
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 888866655 5 68999999999999998754
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=8.9e-23 Score=222.45 Aligned_cols=235 Identities=17% Similarity=0.182 Sum_probs=181.3
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEE
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~Dg~V~v 282 (927)
+|...|.++.| +|+|+++++++.|+++++|+..+++.. .+|...+ .++++++..+++|+.++.+++
T Consensus 65 ~~~~~V~~v~~----------~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~-~~~~~~~~~l~s~~~~~~~~~ 133 (318)
T 4ggc_A 65 QPGEYISSVAW----------IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-GSLSWNSYILSSGSRSGHIHH 133 (318)
T ss_dssp STTCCEEEEEE----------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEEETTEEEEEETTSEEEE
T ss_pred CCCCeEEEEEE----------CCCCCEEEEEECCCcEEEeecCCceeEEEecCccceE-EEeecCCCEEEEEecCCceEe
Confidence 45666777665 789999999999999999998877554 6787776 335566789999999999999
Q ss_pred EeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCee----EEEeccccccceeccee
Q 002405 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIV 358 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~s~~~ 358 (927)
|+.......+..+.+ |.+.+.+++|+++|++|++++.||+|++||+.+++. ......+ ...|.++.+
T Consensus 134 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~ 204 (318)
T 4ggc_A 134 HDVRVAEHHVATLSG--------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAW 204 (318)
T ss_dssp EETTSSSCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEE
T ss_pred eecCCCceeEEEEcC--------ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEe
Confidence 999874566677777 999999999999999999999999999999976542 2233333 567888888
Q ss_pred cCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceee--ecccCCCeeeeeeeecCCeEEEee
Q 002405 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~--s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
+|++. +...+.++. ++++|+............ ...+ ..+.+ ++.++ +++.|+++++|++..+..
T Consensus 205 ~~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~------ 276 (318)
T 4ggc_A 205 CPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK------ 276 (318)
T ss_dssp CTTST-TEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE------
T ss_pred cCCCC-cEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE------
Confidence 88762 111223443 789999988776665543 3344 44444 55554 456899999999765543
Q ss_pred cCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
...+.+|..+|++++|||||++||+||.||++ +||+..
T Consensus 277 --------------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 --------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 45677899999999999999999999999999 999854
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=241.63 Aligned_cols=246 Identities=10% Similarity=0.150 Sum_probs=182.6
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc--------------eecCCC------------Ce
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSG------------DA 259 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--------------~~~~h~------------~~ 259 (927)
.+...|.+++| +|||+++++++.|+.+++|+....+ .+.+|. +.
T Consensus 26 ~~~~~V~~v~~----------s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEF----------NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEE----------CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEE----------CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 34567777665 7899999999999999999987544 236887 77
Q ss_pred E-EEEEcCCC--cEEEEEecCCeEEEEeccCCCcceEE------------------------Eee-------e-cCCCCC
Q 002405 260 V-CASIAPEQ--QILAVGTRRGVVELYDLAESASLIRT------------------------VSL-------Y-DWGYSM 304 (927)
Q Consensus 260 v-~v~~sp~~--~~la~g~~Dg~V~vwd~~~~~~~~~~------------------------l~~-------~-~~~~~~ 304 (927)
| +++|+|++ .+|++|+.||+|++|++.. +..... +.. . ......
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 8 99999998 8999999999999999975 221100 000 0 000113
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc-CCeeEEE-------eccccccceecceecCCCCCCcccccccc---
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST-------IRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~-~~~~~~~-------l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (927)
+|.+.|++++|+|||++|++| .|+.|++||+. ++..... +.+| ...|.+++|+|++. ..+++|+
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~~l~s~~~dg 249 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSC---NTFVYSSSKG 249 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCT---TEEEEEETTS
T ss_pred CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCC---cEEEEEeCCC
Confidence 499999999999999999999 79999999998 4445543 4455 77899999999852 4566665
Q ss_pred eeEEEcCCCceE----EEEEcCCcc------------eEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCC
Q 002405 374 SMMQWDEYGYRL----YAIEEGSSE------------RVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (927)
Q Consensus 374 ~~~~W~~~~~~l----~~~~~~~~~------------~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (927)
++++|+..+++. .....+|.. .|..+.+ ++.+++++. +++++|++......
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~--------- 319 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP--------- 319 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC---------
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc---------
Confidence 899999988876 677777765 7755554 888999888 99999998752221
Q ss_pred CcceEEEeecCcccccCCCc---------------eEEEEEccCCCEEEEEeCCceE-EEEccCCcEEe
Q 002405 435 DELKILHLNLPVSYISQNWP---------------VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (927)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~---------------I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~ 487 (927)
...+.+|... +..++|+|+|++|++|+.||.+ +||+.+++...
T Consensus 320 ----------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 320 ----------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp ----------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ----------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 2334444321 3349999999999999999999 99999887543
No 99
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=233.91 Aligned_cols=318 Identities=15% Similarity=0.163 Sum_probs=217.8
Q ss_pred cCccceeeecccce---ecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeee-----cCCCCCCCCC
Q 002405 239 KKGLKLAEFIKIDK---ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY-----DWGYSMDDTG 308 (927)
Q Consensus 239 d~~~~~w~~~~~~~---~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~-----~~~~~~~h~~ 308 (927)
+.++++|+....+. ..+|.+.| +++|+| ++++||+|+.||+|++||+.+ +.....+... ......+|.+
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCC
Confidence 34566676554332 26799999 999999 999999999999999999987 4433332210 1111234999
Q ss_pred CeeEEEECC-CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCce
Q 002405 309 PVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (927)
Q Consensus 309 ~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~ 384 (927)
+|.+++|+| ++++|++|+.||.|++||+.+++....+.. ...+.++.++|.+. +...++++. .+.+|+..+++
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVST-KHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCS-SCCEEEEEESSSSEEEEESSSSC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCC-CCcEEEEEcCCCeEEEEeCCCcc
Confidence 999999999 788999999999999999999988877763 56688888888652 113555554 89999999998
Q ss_pred EEEEEcCCcceEEEEec---cc-eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEE
Q 002405 385 LYAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (927)
Q Consensus 385 l~~~~~~~~~~v~~~~~---~~-~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~ 460 (927)
......+|...|..+.+ ++ .+++++.|+.+++|++..+...+.......... .........+|..+|.+++|
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK----SQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----CCCTTTSSCSCSSCEEEEEE
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----ceeeccccccccCceeEEEE
Confidence 88888899998866655 55 488999999999999876654322222111100 00112334578899999999
Q ss_pred ccCCCEEEEEeCCceE-EEEccCCcEEeeCC-ccceeeeEEE--EEEe-eCCEEEEEEeecCCCeEEEEEeeCCCCCccc
Q 002405 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSK--GLLW-LGKIIVVCNYIDSSNTYELLFYPRYHLDQSS 535 (927)
Q Consensus 461 spdG~~la~ag~dg~i-~wd~~s~~w~~f~~-~~~e~~~~v~--~~~W-~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~ 535 (927)
+|+|++|++++.||.+ +||+.+++-..... .......... .... .+..+++++. +..+++|+... ..
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~d~~~---~~ 325 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-----GSTIAVYTVYS---GE 325 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-----TTEEEEEETTT---CC
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec-----CCEEEEEECcC---Cc
Confidence 9999999999999999 99998876422111 0000000001 1111 1333444322 24789998742 12
Q ss_pred eeEEEe-cCCc--cEEEEccCCEEEEEEcCCeEEEEEEEE
Q 002405 536 LLCRKS-LLAK--PIVMDVYEDYILVTYRPFDVHIFHVKL 572 (927)
Q Consensus 536 ~~~~~~-~~~~--~~~~~~~~~~l~v~~~d~~i~l~~~~~ 572 (927)
.+.... .... .+.+++.+..|++++.|+.+++|++..
T Consensus 326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 222222 2222 356788899999999999999999863
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=3.4e-23 Score=234.74 Aligned_cols=267 Identities=13% Similarity=0.111 Sum_probs=202.3
Q ss_pred EEEEeCCcEEE-EeeecCccceeeecccc-------eecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCC----
Q 002405 224 FVLYSNGQLMS-CSVSKKGLKLAEFIKID-------KELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA---- 289 (927)
Q Consensus 224 ~~~s~dG~~~~-~~~~d~~~~~w~~~~~~-------~~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~---- 289 (927)
++++|+...++ +++.++.+.+|+..... .+.+|.+.| +++|+| ++++||+|+.||+|++|++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 44566665544 35778899999874321 136899999 999999 99999999999999999998722
Q ss_pred --cceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEccCCeeEEEe--ccccccceecceecCCCCC
Q 002405 290 --SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPIVKPNQDC 364 (927)
Q Consensus 290 --~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~Dg~v~vW~~~~~~~~~~l--~~~~~~~v~s~~~sp~~~~ 364 (927)
..+..+.+ |.+.|++++|+|+| +.|++|+.||.|++||+.+++...++ .+| ...|.+++|+|++
T Consensus 120 ~~~~~~~~~~--------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-- 188 (402)
T 2aq5_A 120 LREPVITLEG--------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDG-- 188 (402)
T ss_dssp BCSCSEEEEC--------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTS--
T ss_pred cCCceEEecC--------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCceEEEEECCCC--
Confidence 45677777 99999999999998 69999999999999999999999999 566 7889999999998
Q ss_pred Ccccccccc---eeEEEcCCCceEEEEE-cCCcce-E--EEEec-cceeeec---ccCCCeeeeeeeecCCeEEEeecCC
Q 002405 365 KYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSER-V--LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRLLVVQSED 433 (927)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~-v--~~~~~-~~~~~s~---s~d~~~~~w~~~~~~~~~~~~~~~~ 433 (927)
..+++++ ++++|++.+++.+... .+|.+. + ..+++ ++.++++ +.|+.+++|++......+
T Consensus 189 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~------- 259 (402)
T 2aq5_A 189 --ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL------- 259 (402)
T ss_dssp --SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-------
T ss_pred --CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-------
Confidence 7777775 8999999999988887 677654 4 55555 7788888 789999999987654310
Q ss_pred CCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe-CCceE-EEEccCCc--EEeeCCccceeeeEEEEEEeeCCEE
Q 002405 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKII 509 (927)
Q Consensus 434 ~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag-~dg~i-~wd~~s~~--w~~f~~~~~e~~~~v~~~~W~~~~l 509 (927)
......|...|.+++|+|||++|+++| .||.+ +||+.+++ ...+.... ....+.+++|.++..
T Consensus 260 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 260 -----------SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRG 326 (402)
T ss_dssp -----------EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGG
T ss_pred -----------eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEecccc
Confidence 111234667899999999999998655 69999 99998876 33332211 112355777765533
Q ss_pred EEEEeecCCCeEEEEEeeC
Q 002405 510 VVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 510 i~~~~~~~~~~~~l~l~~~ 528 (927)
+.+ .....+++|..
T Consensus 327 ~~~-----s~~~~~~~~~l 340 (402)
T 2aq5_A 327 LEV-----NKCEIARFYKL 340 (402)
T ss_dssp SCG-----GGTEEEEEEEE
T ss_pred cce-----ecceeEEEEEc
Confidence 222 12246777755
No 101
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=1.2e-22 Score=217.55 Aligned_cols=206 Identities=12% Similarity=0.075 Sum_probs=156.3
Q ss_pred EEEEEeC----CcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEe--cCCeEEEEeccCCCcceEEEe
Q 002405 223 LFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 223 ~~~~s~d----G~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~--~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
.++++|| |+.++.++.+ +++|+ + ++++++.+++ .|++|++|++...++.+..+.
T Consensus 116 sla~spd~~~~~~~l~s~g~~--~~v~~---------------l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNI--KAVLG---------------L---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp EECC------CCEEEEEEEEE--EEEEE---------------E---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCccccccEEEeCCCe--EEEEe---------------c---CCCcEEEecccCCCCcEEEEEECCCCceeeeec
Confidence 4556777 7777765533 33332 2 5677777754 699999999965577788888
Q ss_pred eecCCCCCCCCCCeeEEEECC---CCCEEEEEEcCCcEEEEEccCCeeEEEecccc--ccceecceecCCCCCCccc---
Q 002405 297 LYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKYEP--- 368 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~sp---dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~--~~~v~s~~~sp~~~~~~~~--- 368 (927)
+ |+..|+.++|+| ||.+||+|+.|++|+|||+.+++++.++.+|+ ...+.+++|+|++ ..
T Consensus 176 ~--------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG----~~lvs 243 (356)
T 2w18_A 176 L--------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG----LLFIV 243 (356)
T ss_dssp E--------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT----EEEEE
T ss_pred c--------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC----CEEEE
Confidence 8 999999999999 78999999999999999999999999998753 2356667899988 43
Q ss_pred ---------ccccc---eeEEEcCCCceEEEEE-----cCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEee
Q 002405 369 ---------LMSGT---SMMQWDEYGYRLYAIE-----EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 369 ---------l~sg~---~~~~W~~~~~~l~~~~-----~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
+++|+ ++++|++.+++++.+. .+|...++..++ +..+++++.|+++++||+.+++.
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~------ 317 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQC------ 317 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSE------
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcE------
Confidence 35665 8999999999887665 467666655555 67889999999999999876654
Q ss_pred cCCCCcceEEEeecCcccccCCCce-EEEEEccCCCEEEEEeCCceE-EEEc
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMFLAVAGLHGLI-LYDI 480 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I-~~va~spdG~~la~ag~dg~i-~wd~ 480 (927)
..++.+|...+ .+++|||||++||+|+.|+++ +||+
T Consensus 318 --------------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 --------------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --------------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred --------------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 45566787655 468999999999999999999 9985
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=3.3e-22 Score=220.45 Aligned_cols=272 Identities=10% Similarity=0.068 Sum_probs=207.4
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCC
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~ 143 (927)
+.+.+.+++|+||+++|++++.||.|++|++..+...... . . .......|. ++.+++.
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~----------~----~------~~~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL----------L----Q------SLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE----------E----E------EEECSSCEEEEEEEESSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc----------e----e------eeecCCceEEEEECCCCC
Confidence 4577899999999999999999999999999854311000 0 0 011222344 4456778
Q ss_pred -eEEEEecCCcEEEEec-CCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccC--CCccEEEEEEccC
Q 002405 144 -HMLLGLSDGSLYSISW-KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP 219 (927)
Q Consensus 144 -~l~v~~~dg~i~~~~w-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~ 219 (927)
.+++++.+|.|++|+. +.... . .+.. +...|.++.|
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~~--~-----------------------------------~~~~~~~~~~v~~l~~--- 109 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPSF--Q-----------------------------------ALTNNEANLGICRICK--- 109 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSE--E-----------------------------------ECBSCCCCSCEEEEEE---
T ss_pred cEEEEEcCCCeEEEEEeccCCce--E-----------------------------------eccccCCCCceEEEEe---
Confidence 8999999999998765 43221 1 1123 5667877765
Q ss_pred cceEEEEEeCCcEEEEeeecCccceeeecc---------ccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------IDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~---------~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
+| ++.+++++.|+.+++|+... .+.. ..|...+ +++|+|++ +++|+.||.|++||+..
T Consensus 110 -------~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 110 -------YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp -------ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred -------CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 67 88888889999999999776 4332 3477888 99999998 99999999999999976
Q ss_pred -CCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCC------eeEEEecccc--------cc
Q 002405 288 -SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQIS--------LS 351 (927)
Q Consensus 288 -~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~------~~~~~l~~~~--------~~ 351 (927)
.......... .|...|.+++|+| ||+++++|+.||.+++|++... .....+..|. ..
T Consensus 180 ~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 180 CEDDNGTIEES-------GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp CTTCCCEEEEC-------SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred cccccceeeec-------CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 3322222222 2788999999999 9999999999999999999776 6777777762 23
Q ss_pred ceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCC-cceEEEEec-cceeeecccCCC-eeeee
Q 002405 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCLNRGVSGM-TYARQ 418 (927)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v~~~~~-~~~~~s~s~d~~-~~~w~ 418 (927)
.|.+++|+|++ ..+++++ .+++|+..+++++....+| ...|..+.+ ++.+++++.|++ .+.+.
T Consensus 253 ~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 253 PVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred eEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 89999999998 7777776 8999999999999999988 888866657 889999999998 65554
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-23 Score=238.36 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=187.0
Q ss_pred EEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEE
Q 002405 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (927)
Q Consensus 136 ~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (927)
.++++|+..++.++.|++|+ +++.... ..+|...|.++.
T Consensus 21 v~~SpDG~~iASas~D~TV~----d~~~~~~-------------------------------------l~gh~~~v~~V~ 59 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG----QPKYAKD-------------------------------------INCNSKNLFHVK 59 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE----EECCCSC-------------------------------------CSSBGGGTEEEE
T ss_pred EEECCCCCEEEEEcCCceee----cccccce-------------------------------------ecCCCccEEEEE
Confidence 36788999999999999987 2222111 124555666655
Q ss_pred EccCcceEEEEEeCCcEEEEeeecCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceE
Q 002405 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (927)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~ 293 (927)
++||| .++.+++|+....... .+|.+.| +++|||+|++||+++.||+|++||.+. ++.
T Consensus 60 ----------FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~ 119 (588)
T 2j04_A 60 ----------EFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT 119 (588)
T ss_dssp ----------EECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE
T ss_pred ----------ECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee
Confidence 58888 5667777765433333 3667888 999999999999999999999999542 333
Q ss_pred EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe-------eEEEe----ccccccceecceecCCC
Q 002405 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-------LMSTI----RQISLSSISSPIVKPNQ 362 (927)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~-------~~~~l----~~~~~~~v~s~~~sp~~ 362 (927)
.+.. ..+ -....|.+++|||||++||+|+.||+|++||+.++. .+.++ .+| .+.|.+++|+|++
T Consensus 120 ~l~~-~~~---~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg 194 (588)
T 2j04_A 120 NLDS-KGN---LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV 194 (588)
T ss_dssp ECCC-SSC---STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE
T ss_pred eccC-CCc---cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc
Confidence 3321 000 002369999999999999999999999999998875 36776 444 6899999999985
Q ss_pred CCCcccccccc--eeEEEcCCCceE---EEEE-cCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCC
Q 002405 363 DCKYEPLMSGT--SMMQWDEYGYRL---YAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (927)
Q Consensus 363 ~~~~~~l~sg~--~~~~W~~~~~~l---~~~~-~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (927)
.++++. ++++|+..+.++ ...+ .+|...|..+.| ++.+++++ ++++++|++..+..
T Consensus 195 -----Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~----------- 257 (588)
T 2j04_A 195 -----LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI----------- 257 (588)
T ss_dssp -----EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE-----------
T ss_pred -----EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE-----------
Confidence 333332 999999988763 3455 478778855555 88888887 69999999764322
Q ss_pred cceEEEeecCcccccCCCceEEEEE--ccCCCEEEEEeCCceEEEEcc
Q 002405 436 ELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGLHGLILYDIR 481 (927)
Q Consensus 436 ~~~w~~~~~~~~~~~~~~~I~~va~--spdG~~la~ag~dg~i~wd~~ 481 (927)
.....+|...|..++| ||||+.+++|+++|.-+|...
T Consensus 258 ---------~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d 296 (588)
T 2j04_A 258 ---------SSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED 296 (588)
T ss_dssp ---------EEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred ---------EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence 1112279999999999 999999999999998678765
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.90 E-value=9.3e-23 Score=224.91 Aligned_cols=277 Identities=14% Similarity=0.106 Sum_probs=195.7
Q ss_pred CceEEEEEecCeEEEEE-ccCeEEEeecCCce--eEEEEEeeChHhhhhcccccEEEEcCCcc-EEEEEecCcEEEEEEE
Q 002405 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKV 96 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wspDg~-~Lav~t~dg~l~i~~l 96 (927)
....++|+|||++||++ .|+.|+||+..... ..+.... .+.+.+.+++|+||++ +|++++.||.|++|++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 45558999999988887 58899999985222 1121111 2456788999999999 9999999999999998
Q ss_pred -EecCceeecCCCCCCCccceeeeEEeeccccccc--ccceEEEeecc-CCeEEEEecCCcEEEEecCCccccceeeccc
Q 002405 97 -QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (927)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~-~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~ 172 (927)
..+.. ... .. +...|.+++.. +..+++++.||.|++|+............
T Consensus 87 ~~~~~~-~~~-----------------------~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-- 140 (342)
T 1yfq_A 87 IGSPSF-QAL-----------------------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK-- 140 (342)
T ss_dssp SSSSSE-EEC-----------------------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE--
T ss_pred ccCCce-Eec-----------------------cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccccccc--
Confidence 64321 111 11 23344444332 78899999999999875442110000000
Q ss_pred CCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecc-cc
Q 002405 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-ID 251 (927)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~-~~ 251 (927)
........+...+.++.| ++++ +++++.++.+++|+... ..
T Consensus 141 --------------------------~~~~~~~~~~~~v~~~~~----------~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 141 --------------------------NLNSNNTKVKNKIFTMDT----------NSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp --------------------------ESCSSSSSSCCCEEEEEE----------CSSE--EEEEESTTEEEEEESSCCTT
T ss_pred --------------------------CCeeeEEeeCCceEEEEe----------cCCc--EEEEeCCCeEEEEECCcccc
Confidence 000011225566777766 4555 77778888888998876 33
Q ss_pred e-----ecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCC-----CcceEEEeeecC-CCCCCCCCCeeEEEECCC
Q 002405 252 K-----ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDW-GYSMDDTGPVSCIAWTPD 318 (927)
Q Consensus 252 ~-----~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~-----~~~~~~l~~~~~-~~~~~h~~~V~~l~~spd 318 (927)
. ...|...+ +++|+| +++++++|+.||.|++|+++.. ......+..... ....+|.++|++++|+||
T Consensus 183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence 2 14677788 999999 9999999999999999999873 266777776211 001124559999999999
Q ss_pred CCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 319 NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 319 g~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
|++|++|+.||.|++||+.+++++.++.+||...|.+++ |++ ..+++++
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~----~~l~s~s 311 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD----NILCLAT 311 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS----SEEEEEE
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC----CeEEEEe
Confidence 999999999999999999999999999887577888888 777 6777665
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=1.1e-22 Score=233.10 Aligned_cols=254 Identities=12% Similarity=0.209 Sum_probs=206.8
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
++..||+.+++++.|+++++||..+++.. .+|...| +++| ++++||+|+.||+|++||+.+ ++.+.++.+
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~--- 211 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH--- 211 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC---
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC---
Confidence 34568999999999999999998776543 7899999 8888 788999999999999999988 778888877
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeE---EEeccccccceecceecCCCCCCcccccccc---e
Q 002405 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~---~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (927)
|.+.|.+++|++ ..+++|+.||.|++||+.++... ..+.+| ...|.++.+ ++ ..+++|+ +
T Consensus 212 -----h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l~s~~~dg~ 277 (435)
T 1p22_A 212 -----HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DD----KYIVSASGDRT 277 (435)
T ss_dssp -----CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ET----TEEEEEETTSE
T ss_pred -----CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CC----CEEEEEeCCCe
Confidence 999999999974 59999999999999999876554 566666 778998888 33 5566665 8
Q ss_pred eEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 375 MMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
+++|+..+++++....+|...+..+.+ ++.+++++.|+++++|++..+.. ...+.+|..
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------------------~~~~~~h~~ 337 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEE 337 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSS
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE--------------------EEEEeCCcC
Confidence 999999999999999999999988888 88999999999999999876543 345668999
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCc----------EEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEE
Q 002405 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK----------WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYE 522 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag~dg~i-~wd~~s~~----------w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~ 522 (927)
+|.+++| +|++|++|+.||.+ +||+.++. ...+.. +. ..+..+.|.+..++++ +.+..
T Consensus 338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--h~--~~v~~l~~~~~~l~s~-----s~Dg~ 406 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HS--GRVFRLQFDEFQIVSS-----SHDDT 406 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CS--SCCCCEEECSSCEEEC-----CSSSE
T ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--CC--CCeEEEEeCCCEEEEE-----eCCCE
Confidence 9999988 89999999999999 99987653 122211 11 2356778888887776 34568
Q ss_pred EEEeeCC
Q 002405 523 LLFYPRY 529 (927)
Q Consensus 523 l~l~~~~ 529 (927)
+++|+..
T Consensus 407 i~iwd~~ 413 (435)
T 1p22_A 407 ILIWDFL 413 (435)
T ss_dssp EEEEC--
T ss_pred EEEEECC
Confidence 9999874
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.90 E-value=2.4e-22 Score=221.05 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=190.2
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEee--c--c
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S--D 141 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~--~ 141 (927)
+.+.+.+++|+||+++||+++.||.|++|++..+...... ...+.++...|.+++ + +
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL-------------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE-------------------EEEEECCSSCEEEEEECCGGG
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee-------------------cceeccCCCcEEEEEEcCCCC
Confidence 4578899999999999999999999999999743321000 001123344566554 3 4
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcc
Q 002405 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (927)
Q Consensus 142 ~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (927)
+..+++++.||.|++|+.+........ ... ........+...|.++.|
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~--------~~~-------------------~~~~~~~~~~~~v~~~~~----- 118 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSG--------RRW-------------------NKLCTLNDSKGSLYSVKF----- 118 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSS--------CSE-------------------EEEEEECCCSSCEEEEEE-----
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccc--------cCc-------------------ceeeeecccCCceeEEEE-----
Confidence 678999999999999876543211000 000 000112345667777665
Q ss_pred eEEEEEeC--CcEEEEeeecCccceeeeccccee----------------cCCCCeE-EEEEcCC---CcEEEEEecCCe
Q 002405 222 LLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKE----------------LGSGDAV-CASIAPE---QQILAVGTRRGV 279 (927)
Q Consensus 222 ~~~~~s~d--G~~~~~~~~d~~~~~w~~~~~~~~----------------~~h~~~v-~v~~sp~---~~~la~g~~Dg~ 279 (927)
+|+ |+.+++++.|+.+++||..+.+.. .+|...+ +++|+|+ +.++++|+.|+.
T Consensus 119 -----~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 193 (351)
T 3f3f_A 119 -----APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193 (351)
T ss_dssp -----CCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred -----cCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence 667 888888888999999987655321 2577777 9999997 999999999999
Q ss_pred EEEEeccCCCcc--eEEEeeecCCCCCCCCCCeeEEEECCCC----CEEEEEEcCCcEEEEEccCCeeEEEeccccccce
Q 002405 280 VELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDN----SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (927)
Q Consensus 280 V~vwd~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg----~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (927)
+.+|+... +.. ...+.+ |.++|++++|+|+| ++|++|+.||.|++||+..+........+ ....
T Consensus 194 ~~~~~~~~-~~~~~~~~~~~--------h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 263 (351)
T 3f3f_A 194 IIYQRGKD-GKLHVAAKLPG--------HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES-LTNS 263 (351)
T ss_dssp EEEEECTT-SCEEEEEECCC--------CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EEEEccCC-CceeeeeecCC--------CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc-ccce
Confidence 98887765 433 444444 99999999999998 89999999999999999765443332222 1122
Q ss_pred ecceecCCCCCCcccccccc-------eeEEEcCCCceEEEEEcCCcceEEEEec---cceeeecccCCCeeeeeeeecC
Q 002405 354 SSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (927)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~ 423 (927)
.....++.. ....++. ...+|+....+++....+|...|..+.+ ++.+++++.|+.+++|++..++
T Consensus 264 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 264 NMFDNSADV----DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eccCCCccc----ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 222222222 1111111 4556777777888888999999966665 8899999999999999987654
Q ss_pred C
Q 002405 424 D 424 (927)
Q Consensus 424 ~ 424 (927)
.
T Consensus 340 ~ 340 (351)
T 3f3f_A 340 E 340 (351)
T ss_dssp C
T ss_pred c
Confidence 3
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=1.2e-22 Score=230.28 Aligned_cols=239 Identities=11% Similarity=0.133 Sum_probs=187.2
Q ss_pred cCCCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeecccc----------eecCCCCeE-EEEEcCCC-cEE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQ-QIL 271 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~~~----------~~~~h~~~v-~v~~sp~~-~~l 271 (927)
.+|...|.++.| +| +|+++++++.|+++++|+..... .+.+|...+ +++|+|++ .+|
T Consensus 78 ~~h~~~V~~~~~----------~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 147 (402)
T 2aq5_A 78 CGHTAPVLDIAW----------CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVL 147 (402)
T ss_dssp CCCSSCEEEEEE----------CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEE
T ss_pred ecCCCCEEEEEe----------CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEE
Confidence 467788888876 66 88899999999999999987652 236899999 99999998 699
Q ss_pred EEEecCCeEEEEeccCCCcceEEE--eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe-ccc
Q 002405 272 AVGTRRGVVELYDLAESASLIRTV--SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQI 348 (927)
Q Consensus 272 a~g~~Dg~V~vwd~~~~~~~~~~l--~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l-~~~ 348 (927)
++|+.||+|++||+.+ ++.+..+ .. |.+.|.+++|+|||+.|++|+.||.|++||+.+++...++ ..|
T Consensus 148 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGT-GAAVLTLGPDV--------HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECTTT--------CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEcCCCEEEEEECCC-CCccEEEecCC--------CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence 9999999999999987 7777777 55 9999999999999999999999999999999999998888 566
Q ss_pred cccceecceecCCCCCCccccccc---c---eeEEEcCCCceE-EE-EEcCCcceEE--EEec-cceee-ecccCCCeee
Q 002405 349 SLSSISSPIVKPNQDCKYEPLMSG---T---SMMQWDEYGYRL-YA-IEEGSSERVL--IFSF-GKCCL-NRGVSGMTYA 416 (927)
Q Consensus 349 ~~~~v~s~~~sp~~~~~~~~l~sg---~---~~~~W~~~~~~l-~~-~~~~~~~~v~--~~~~-~~~~~-s~s~d~~~~~ 416 (927)
....+..+.|+|++ ..+++| . .+.+|+..+.+. +. ....|...+. .+++ ++.++ +++.|+.+++
T Consensus 219 ~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 219 EGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 33448899999998 777776 2 899999987543 22 2224555564 4444 66664 6778999999
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w 485 (927)
|++..+...+.. ...+ .|..+|++++|+|+|.++++ .++.+ +|++.+++.
T Consensus 295 ~d~~~~~~~~~~----------------l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 295 FEITSEAPFLHY----------------LSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEECSSTTCEEE----------------EEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEecCCCcceEe----------------eccc-ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 998765531100 1111 25689999999999999874 56677 999987654
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=2.6e-22 Score=223.54 Aligned_cols=292 Identities=8% Similarity=0.045 Sum_probs=185.7
Q ss_pred hcccccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeE
Q 002405 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (927)
Q Consensus 66 ~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (927)
+.+.+.+++|||||++||+++.+| +++|+++...... .... . ...+.++.++++.+
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----------------~~~~----~--~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----------------SQEM----R--HLSKVRMLHRTNYV 73 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----------------EEEC----S--CCCEEEECTTSSEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----------------eeec----C--CeEEEEEcCCCCEE
Confidence 457789999999999999998876 7899975321110 0000 0 12334555666666
Q ss_pred -EEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEE
Q 002405 146 -LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (927)
Q Consensus 146 -~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (927)
++++.++.|++|+.... .... ...+...|.++.+++
T Consensus 74 ~~~~~~d~~v~iWd~~~~--~~~~-----------------------------------~~~~~~~v~~v~~~~------ 110 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKK--QDVS-----------------------------------RIKVDAPVKDLFLSR------ 110 (355)
T ss_dssp EEECSSTTEEEEEETTTT--EEEE-----------------------------------EEECSSCEEEEEECS------
T ss_pred EEEECCccEEEEEECCCC--cEEE-----------------------------------EEECCCceEEEEEcC------
Confidence 45667788888665422 1110 011233566666533
Q ss_pred EEEeCCcEEEEeeecCccceeeeccc-ceecCCCCeE-EEEEcCCCcEEEE--EecCCeEEEEeccCCCc----------
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAV-CASIAPEQQILAV--GTRRGVVELYDLAESAS---------- 290 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~-~~~~~h~~~v-~v~~sp~~~~la~--g~~Dg~V~vwd~~~~~~---------- 290 (927)
++ +++ ..++.+++|+..+. +......... .+++++ .++|+ |+.||+|++||+.+ +.
T Consensus 111 ----~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~ 180 (355)
T 3vu4_A 111 ----EF--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQ 180 (355)
T ss_dssp ----SE--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred ----CE--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCcccccccccc
Confidence 32 222 23667888887765 3321111144 677888 66666 68999999999986 33
Q ss_pred ------ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc-EEEEEccCCeeEEEec-cccccceecceecCCC
Q 002405 291 ------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQ 362 (927)
Q Consensus 291 ------~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~-v~vW~~~~~~~~~~l~-~~~~~~v~s~~~sp~~ 362 (927)
.+..+.+ |.++|++++|+|||++||+|+.||+ |++||+.+++++.++. +.|...|.+++|+|++
T Consensus 181 ~~~~~p~~~~~~~--------h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 181 QKAILGKGVLIKA--------HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp ------CCEEECC--------CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred ccccCcccEEEEc--------cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence 1556666 9999999999999999999999999 9999999999999998 5247899999999998
Q ss_pred CCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceE
Q 002405 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (927)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (927)
..+++++ ++++|+....... ....+. ..+.....+ ..|.+..
T Consensus 253 ----~~l~s~s~d~~v~iw~~~~~~~~--------~~~~~~--~~~~~~~~~---~~~~~~~------------------ 297 (355)
T 3vu4_A 253 ----SKLAVVSDKWTLHVFEIFNDQDN--------KRHALK--GWINMKYFQ---SEWSLCN------------------ 297 (355)
T ss_dssp ----CEEEEEETTCEEEEEESSCCSCC--------CSEETT--TTEECCCCC---CSSCSEE------------------
T ss_pred ----CEEEEEECCCEEEEEEccCCCCc--------cccccc--ceeeccccc---cccceeE------------------
Confidence 7777765 7888887653210 000000 000000000 0111110
Q ss_pred EEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
..++. .+..+...++|+|||++|++++.||.+ +|++..
T Consensus 298 --~~~~~---~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 298 --FKLSV---DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp --EECCC---CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred --EEecc---CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 00111 122344669999999999999999999 998754
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-21 Score=225.19 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=193.6
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCcee---EEEEEeeChH---------------h-------------------
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV---RLGKYKRDSE---------------S------------------- 63 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~---~l~~~~r~~~---------------s------------------- 63 (927)
+...++|||||++|+++.++.|++|+.. .+. .+..+..... .
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 4567889999999888889999999984 444 3333321100 0
Q ss_pred --------------hhhcccccEEEEcCCccEE-EEEecCcEEEEEEEE--ecCceeecCCCCCCCccceeeeEEeeccc
Q 002405 64 --------------VQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQ--ITEKSIQIGGKQPSGLFFIKISLVLNEQL 126 (927)
Q Consensus 64 --------------l~~~G~~~~v~wspDg~~L-av~t~dg~l~i~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (927)
-.+.+.+.+++|+|||++| |+++.||.|++|++. .+....... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-----------------~-- 145 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-----------------R-- 145 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-----------------E--
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-----------------c--
Confidence 0112358899999999996 889999999999997 332211110 0
Q ss_pred ccccccceEE--EeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccc
Q 002405 127 PFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (927)
Q Consensus 127 ~~~~~~~~v~--~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 204 (927)
......|+ ++.+++..+++++.+|.+..|+.......... ...+
T Consensus 146 --~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~--------------------------------~~~~ 191 (450)
T 2vdu_B 146 --FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT--------------------------------QEPI 191 (450)
T ss_dssp --EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC--------------------------------CCCS
T ss_pred --ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc--------------------------------ceee
Confidence 01112333 45677889999999999988764322111000 0112
Q ss_pred cCCCccEEEEEEccCcceEEEEEeC---CcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEEec
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTR 276 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d---G~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g~~ 276 (927)
..|...|.++.| +|| |+++++++.|+++++|+..+++.. .+|...+ +++|+ ++++||+|+.
T Consensus 192 ~~h~~~v~~~~~----------sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 192 LGHVSMLTDVHL----------IKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp EECSSCEEEEEE----------EECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred ecccCceEEEEE----------cCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 345566777664 788 999999999999999998766432 4899999 99999 9999999999
Q ss_pred CCeEEEEeccCCCcceEEEeeecC-----------------CCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEc--
Q 002405 277 RGVVELYDLAESASLIRTVSLYDW-----------------GYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV-- 336 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~-----------------~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~-- 336 (927)
||+|++||+.+ ++.+..+..... .....+...|.+++|+|||++|++++ .|+.|++|++
T Consensus 261 d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 261 DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp SSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred CCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 99999999988 777777653210 00002346799999999999999999 8999999999
Q ss_pred cCC---eeEEEeccccccceecceecCCC
Q 002405 337 SGC---RLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 337 ~~~---~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
..+ ..+.++..+ ..+.+++|+|++
T Consensus 340 ~~~~~l~~~~~~~~~--~~v~~~~~~~~~ 366 (450)
T 2vdu_B 340 KQKGDLALKQIITFP--YNVISLSAHNDE 366 (450)
T ss_dssp SSTTCEEEEEEEECS--SCEEEEEEETTE
T ss_pred CCCCceeeccEeccC--CceEEEEecCCc
Confidence 555 666677765 568888888853
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.6e-22 Score=224.32 Aligned_cols=240 Identities=13% Similarity=0.126 Sum_probs=187.3
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg 329 (927)
.+|.+.| +++|+|++++||+|+.||+|++|++... ......+.+ |.++|++++|+|+ +++|++|+.||
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC--------CCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 6899999 9999999999999999999999999731 455566766 9999999999987 99999999999
Q ss_pred cEEEEEccCCe--eEEEeccccccceecceecCC--CCCCcccccccc---eeEEEcCCCc--eEEEEEcCCcceEEEEe
Q 002405 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFS 400 (927)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~s~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~~~ 400 (927)
.|++||+.+++ ....+..| ...|.+++|+|+ + ..+++++ ++++|+.... .......+|...|..+.
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCC----CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 99999999886 66677766 788999999998 6 6677665 8999998776 23445567888885554
Q ss_pred c----------------cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC-
Q 002405 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (927)
Q Consensus 401 ~----------------~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd- 463 (927)
+ ++.+++++.|+.+++|++..+.... .+...+.+|..+|.+++|+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce----------------eeEEEEecccCcEeEEEECCCC
Confidence 4 4678999999999999987654421 112355679999999999999
Q ss_pred --CCEEEEEeCCceE-EEEccCCc----EEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 464 --GMFLAVAGLHGLI-LYDIRQKK----WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 464 --G~~la~ag~dg~i-~wd~~s~~----w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
|++|++++.||.+ +||+.++. ...+....+ ...+..+.|. +..+++++. +..+++|+..
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~-----dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF--PDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC--SSCEEEEEECSSSCCEEEEES-----SSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC--CCcEEEEEEcCCCCEEEEecC-----CCcEEEEeCC
Confidence 9999999999999 99998863 222222112 2346778885 456666532 3568888763
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-22 Score=229.06 Aligned_cols=258 Identities=10% Similarity=0.012 Sum_probs=181.9
Q ss_pred CCCeE-EEEEcCCCcEE-EEEecCCeEEEEecc--CCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 256 SGDAV-CASIAPEQQIL-AVGTRRGVVELYDLA--ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~l-a~g~~Dg~V~vwd~~--~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
|.+.| +++|+|++++| |+|+.||+|++||+. + +..+..+.... |.+.|++++|+|||++|++|+.||.+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFC------FSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeeccc------CCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 44468 99999999996 999999999999998 6 67777776311 78899999999999999999999999
Q ss_pred EEEEccCCeeEE----EeccccccceecceecCC---CCCCcccccccc---eeEEEcCCCceEEEE-EcCCcceEEEEe
Q 002405 332 TVWSVSGCRLMS----TIRQISLSSISSPIVKPN---QDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFS 400 (927)
Q Consensus 332 ~vW~~~~~~~~~----~l~~~~~~~v~s~~~sp~---~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~~ 400 (927)
++|++.++.... .+.+| ...|.+++|+|+ + ..+++|+ ++++|+..+++++.. ..+|...|..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGH----QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSC----EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEE
T ss_pred EEEecCCcccccccceeeecc-cCceEEEEEcCCCCCC----cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEE
Confidence 999997766443 66666 788999999999 6 7788776 899999988877766 568998897777
Q ss_pred c--cceeeecccCCCeeeeeeeecCCeEEEeecCCC-Ccc--eEEEee---cCcccccCCCceEEEEEccCCCEEEEEe-
Q 002405 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT-DEL--KILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAG- 471 (927)
Q Consensus 401 ~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~-~~~--~w~~~~---~~~~~~~~~~~I~~va~spdG~~la~ag- 471 (927)
| ++.+++++.|+++++|++..+... ........ ... .++... .+.........|.+++++|+|++|++++
T Consensus 249 ~sd~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 249 CGKDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp ECSTTEEEEEESSSEEEEEETTTCCEE-EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred ECCCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 7 789999999999999998765432 11111000 000 000000 0000012345789999999999999999
Q ss_pred CCceE-EEEc--cC-CcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCC---CeEEEEEeeC
Q 002405 472 LHGLI-LYDI--RQ-KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS---NTYELLFYPR 528 (927)
Q Consensus 472 ~dg~i-~wd~--~s-~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~---~~~~l~l~~~ 528 (927)
.++.+ +|++ .+ ++++........ ..+.+++|.++.++++...... .+..+++|..
T Consensus 328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 328 ATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp TCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 89999 9999 44 333332211111 2367889987766655332211 1334566654
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-22 Score=249.20 Aligned_cols=252 Identities=16% Similarity=0.114 Sum_probs=197.1
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecc--cce---ecCCCCeE-EEEEcCC--CcEEEEEe
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK--IDK---ELGSGDAV-CASIAPE--QQILAVGT 275 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~--~~~---~~~h~~~v-~v~~sp~--~~~la~g~ 275 (927)
+.+|...|.++.| +|||+++++++.|+++++|+... .+. ..+|.+.| +++|+|+ +++|++|+
T Consensus 5 l~gH~~~V~~l~~----------s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 5 ANAHNELIHDAVL----------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp ---CCCCEEEECC----------CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE
T ss_pred cccCcceeEEEEE----------CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe
Confidence 3567788888776 78899999999999999999763 222 36899999 9999998 99999999
Q ss_pred cCCeEEEEeccCCCc--ceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEccCC--eeEEEecccc
Q 002405 276 RRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC--RLMSTIRQIS 349 (927)
Q Consensus 276 ~Dg~V~vwd~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg~v~vW~~~~~--~~~~~l~~~~ 349 (927)
.||+|++||+.+ +. ....+.. |.++|++++|+|+ |..+++|+.||.|++||+.++ .....+.+|
T Consensus 75 ~Dg~I~vwd~~~-~~~~~~~~~~~--------h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~- 144 (753)
T 3jro_A 75 YDGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH- 144 (753)
T ss_dssp TTSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-
T ss_pred CCCeEEEEECCC-CcccccccccC--------CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-
Confidence 999999999987 54 4555555 9999999999999 999999999999999999776 234455556
Q ss_pred ccceecceecCCCC---------CCcccccccc---eeEEEcCCCc----eEEEEEcCCcceEEEEec------cceeee
Q 002405 350 LSSISSPIVKPNQD---------CKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GKCCLN 407 (927)
Q Consensus 350 ~~~v~s~~~sp~~~---------~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v~~~~~------~~~~~s 407 (927)
...|.++.|+|... .+...+++|+ ++++|+..++ .+.....+|...|..+.+ ++.+++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 78899999999410 0116677665 8999998765 666777889999966655 367899
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC-CcE
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKW 485 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s-~~w 485 (927)
++.|+++++|++..+.... ........+|..+|++++|+|+|+++++|+.||.+ +|++.+ ++|
T Consensus 225 ~s~Dg~I~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 225 VSQDRTCIIWTQDNEQGPW---------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp EESSSCEEEEEESSSSSCC---------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred EecCCEEEEecCCCCCCcc---------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 9999999999987654210 00122344688899999999999999999999999 999984 566
Q ss_pred EeeCC
Q 002405 486 RVFGD 490 (927)
Q Consensus 486 ~~f~~ 490 (927)
...+.
T Consensus 290 ~~~~~ 294 (753)
T 3jro_A 290 EPAGE 294 (753)
T ss_dssp BCCCC
T ss_pred ccccc
Confidence 65544
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=1.6e-21 Score=217.22 Aligned_cols=290 Identities=9% Similarity=0.134 Sum_probs=190.4
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEE-EEecCcEEEEEEEEec
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIA-VVTSSLYLHIFKVQIT 99 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~La-v~t~dg~l~i~~l~~~ 99 (927)
....++|||||++||+++++.++||+.. +...+... +.+.+..++|.++++.++ +++.++.|++||+..+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQ--------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEE--------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred ceEEEEECCCCCEEEEEcCCEEEEEecC-Ccceeeee--------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 4556999999999999998899999996 54433221 123467899999999885 4667789999997643
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccc
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i 179 (927)
.... ... ....|.++..+++.++++ .++.+++|+..... ....
T Consensus 92 ~~~~-----------------~~~-------~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~-~~~~----------- 134 (355)
T 3vu4_A 92 QDVS-----------------RIK-------VDAPVKDLFLSREFIVVS-YGDVISVFKFGNPW-KRIT----------- 134 (355)
T ss_dssp EEEE-----------------EEE-------CSSCEEEEEECSSEEEEE-ETTEEEEEESSTTC-CBSS-----------
T ss_pred cEEE-----------------EEE-------CCCceEEEEEcCCEEEEE-EcCEEEEEECCCCc-eeeE-----------
Confidence 2111 000 112566777777776665 47788887654321 1100
Q ss_pred ccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEE--eeecCccceeeecccc------
Q 002405 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC--SVSKKGLKLAEFIKID------ 251 (927)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~--~~~d~~~~~w~~~~~~------ 251 (927)
.+.. .. ..+++++ ..+++ +..++++++||...+.
T Consensus 135 -----------------------~~~~---~~----------~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 135 -----------------------DDIR---FG----------GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp -----------------------CCEE---EE----------EEEEEET--TEEEEEESSCTTCEEEEECCC--------
T ss_pred -----------------------Eecc---CC----------ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 0000 11 1233444 44444 5788999999987532
Q ss_pred -------------eecCCCCeE-EEEEcCCCcEEEEEecCCe-EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEEC
Q 002405 252 -------------KELGSGDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (927)
Q Consensus 252 -------------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s 316 (927)
.+.+|.+.| +++|+|++++||+|+.||+ |++||+.+ ++.+.++... .|.++|++++|+
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g------~h~~~v~~~~~s 249 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRG------LDRADVVDMKWS 249 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECT------TCCSCEEEEEEC
T ss_pred ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcC------CCCCcEEEEEEC
Confidence 347899999 9999999999999999998 99999998 7788877620 188999999999
Q ss_pred CCCCEEEEEEcCCcEEEEEccCCeeE--EEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEc--CC
Q 002405 317 PDNSAFAVGWKSRGLTVWSVSGCRLM--STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEE--GS 392 (927)
Q Consensus 317 pdg~~Lasg~~Dg~v~vW~~~~~~~~--~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~--~~ 392 (927)
|||++||+|+.|++|++||+..+... ..+.. . +.|.- +. -.|.... +.... ..
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~--------~-~~~~~------~~-----~~~~~~~---~~~~~~~~~ 306 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG--------W-INMKY------FQ-----SEWSLCN---FKLSVDKHV 306 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCSCCCSEETTT--------T-EECCC------CC-----CSSCSEE---EECCCCTTC
T ss_pred CCCCEEEEEECCCEEEEEEccCCCCcccccccc--------e-eeccc------cc-----cccceeE---EEeccCCCC
Confidence 99999999999999999999764211 11111 0 11110 00 0121110 00001 11
Q ss_pred cceEEEEec-cceeeecccCCCeeeeeeeecCC
Q 002405 393 SERVLIFSF-GKCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 393 ~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
...+.+++. ++.+++++.|+.++.|++..++.
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 224456666 77888999999999999876554
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=1.4e-21 Score=217.10 Aligned_cols=274 Identities=11% Similarity=0.089 Sum_probs=193.2
Q ss_pred ccCCCccEEEEEEccCcceEEEEEeC---CcEEEEeeecCccceeeecc-cce----ecCCCCeE-EEEEcCCCcEEEEE
Q 002405 204 KFPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIK-IDK----ELGSGDAV-CASIAPEQQILAVG 274 (927)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~d---G~~~~~~~~d~~~~~w~~~~-~~~----~~~h~~~v-~v~~sp~~~~la~g 274 (927)
+..|...|.++.| +|+ |+++++++.|+.+++|+..+ ... ..+|...+ +++|+|++++||+|
T Consensus 35 ~~~h~~~v~~~~~----------~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 35 TSSPDDSIGCLSF----------SPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCCSSCEEEEEE----------CCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCCceEEEEE----------cCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 3567888988876 566 68999999999999999875 322 26799999 99999999999999
Q ss_pred ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEE--CCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccc
Q 002405 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (927)
Q Consensus 275 ~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~--spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~ 352 (927)
+.||+|++||+.+ +.... +.. |.++|++++| +|+|++|++|+.||.|++||+.+++++.++..+ ..
T Consensus 105 ~~dg~v~iwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~ 172 (368)
T 3mmy_A 105 SCDKTAKMWDLSS-NQAIQ-IAQ--------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ER 172 (368)
T ss_dssp ETTSEEEEEETTT-TEEEE-EEE--------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SC
T ss_pred cCCCcEEEEEcCC-CCcee-ecc--------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CC
Confidence 9999999999987 54443 455 9999999999 999999999999999999999998888888765 34
Q ss_pred eecceecCCCCCCcccccccc-eeEEEcCCCceEEEEE----cCCcceEEEEec-cc----eeeecccCCCeeeeeeeec
Q 002405 353 ISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE----EGSSERVLIFSF-GK----CCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~----~~~~~~v~~~~~-~~----~~~s~s~d~~~~~w~~~~~ 422 (927)
+.++.+.++. ..+.++. .+.+|+.......... ..+......+.+ .. .+++++.|+.+++|++...
T Consensus 173 ~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 173 CYCADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp EEEEEEETTE----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred ceEEEecCCe----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 5555554432 2222222 8889998765433222 123334444444 22 2899999999999998654
Q ss_pred CC--eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-eeCCccceeeeE
Q 002405 423 ED--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQ 498 (927)
Q Consensus 423 ~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~-~f~~~~~e~~~~ 498 (927)
.. .+....+.. .........+|..+|++++|+|+|++||+|+.||.+ +||+.+++.. .+. .+ ...
T Consensus 249 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~--~~~ 317 (368)
T 3mmy_A 249 NPAKDNFTFKCHR-------SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QL--DQP 317 (368)
T ss_dssp CHHHHSEEEECSE-------EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CC--SSC
T ss_pred Cccccceeeeeee-------cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CC--CCC
Confidence 32 000000000 000011222344489999999999999999999999 9999987643 222 11 234
Q ss_pred EEEEEee--CCEEEEEEe
Q 002405 499 SKGLLWL--GKIIVVCNY 514 (927)
Q Consensus 499 v~~~~W~--~~~li~~~~ 514 (927)
+..++|. +..+++++.
T Consensus 318 v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 318 ISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEEEEECTTSSCEEEEEC
T ss_pred ceEEEECCCCCeEEEEec
Confidence 7788886 556777644
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=3.3e-21 Score=214.17 Aligned_cols=270 Identities=15% Similarity=0.174 Sum_probs=183.8
Q ss_pred CceEEEEEec---CeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEE
Q 002405 21 SQQIIYFKVN---NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (927)
Q Consensus 21 ~~~iv~fs~d---g~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l 96 (927)
....++|+|+ |++||+++ |+.|+||+.......+..... .+.+.+.+++|+||+++|++++.||.|++|++
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 4555899999 69999885 789999999632333321111 24577899999999999999999999999998
Q ss_pred EecCceeecCCCCCCCccceeeeEEeecccccccccceEEEe----eccCCeEEEEecCCcEEEEecCCccccceeeccc
Q 002405 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI----VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (927)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i----~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~ 172 (927)
..+.... . ......|.++ .+++..+++++.||.|++|+.........
T Consensus 116 ~~~~~~~-~-----------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----- 166 (368)
T 3mmy_A 116 SSNQAIQ-I-----------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV----- 166 (368)
T ss_dssp TTTEEEE-E-----------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE-----
T ss_pred CCCCcee-e-----------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE-----
Confidence 6332110 0 1122344444 34556789999999999866543211100
Q ss_pred CCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce
Q 002405 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (927)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~ 252 (927)
......+.++. ..+..++++..++.+.+|+......
T Consensus 167 --------------------------------~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 167 --------------------------------LQLPERCYCAD------------VIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp --------------------------------EECSSCEEEEE------------EETTEEEEEEGGGCEEEEECSSSCE
T ss_pred --------------------------------EecCCCceEEE------------ecCCeeEEEeCCCcEEEEEeccccc
Confidence 00111233332 3344666777777888888754322
Q ss_pred e-----cCCCCeE-EEEEcCCCcE----EEEEecCCeEEEEeccCCC--cceEEEeeecC----CCCCCCCCCeeEEEEC
Q 002405 253 E-----LGSGDAV-CASIAPEQQI----LAVGTRRGVVELYDLAESA--SLIRTVSLYDW----GYSMDDTGPVSCIAWT 316 (927)
Q Consensus 253 ~-----~~h~~~v-~v~~sp~~~~----la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~----~~~~~h~~~V~~l~~s 316 (927)
. ..+.... ++++.++... +++|+.||.|++|+++... .....+..... ....+|..+|++++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 1 2233334 5666555443 9999999999999998722 44566666110 0001122379999999
Q ss_pred CCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 317 pdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
|||++||+|+.||.|++||+.+++++.++.+| ...|.+++|+|++ ..+++++
T Consensus 283 p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g----~~l~~~s 334 (368)
T 3mmy_A 283 PVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNG----NIFAYAS 334 (368)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTS----SCEEEEE
T ss_pred cCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCC----CeEEEEe
Confidence 99999999999999999999999999999887 7889999999998 7777765
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=3.6e-21 Score=220.25 Aligned_cols=243 Identities=11% Similarity=0.155 Sum_probs=185.9
Q ss_pred EEEEeC-CcEEEEeeecCccceeeecc----------cce---ecCCCCeE-EEEEcCCCc-EEEEEecCCeEEEEeccC
Q 002405 224 FVLYSN-GQLMSCSVSKKGLKLAEFIK----------IDK---ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 224 ~~~s~d-G~~~~~~~~d~~~~~w~~~~----------~~~---~~~h~~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~ 287 (927)
++++|+ +.++++++.++.+++|+... ... ..+|...+ +++|+|+++ +|++|+.||+|++|++..
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 445776 67888888899999998765 221 26888888 999999998 999999999999999986
Q ss_pred CCcc------eEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEccCC---eeEEEeccccccceecce
Q 002405 288 SASL------IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPI 357 (927)
Q Consensus 288 ~~~~------~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~s~~ 357 (927)
.... ...+.. |.+.|.+++|+| ++..|++++.||.|++||+..+ .....+..| ...|++++
T Consensus 214 ~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~i~ 284 (430)
T 2xyi_A 214 TPKEHRVIDAKNIFTG--------HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNCLS 284 (430)
T ss_dssp CCBGGGEEECSEEECC--------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEEEE
T ss_pred CCCCCceeccceeecC--------CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEEEE
Confidence 2211 234444 999999999999 7889999999999999999876 566777766 78899999
Q ss_pred ecCCCCCCcc-cccccc---eeEEEcCCC-ceEEEEEcCCcceEEEEec---cc-eeeecccCCCeeeeeeeecCCeEEE
Q 002405 358 VKPNQDCKYE-PLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLV 428 (927)
Q Consensus 358 ~sp~~~~~~~-~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~~---~~-~~~s~s~d~~~~~w~~~~~~~~~~~ 428 (927)
|+|++ . .+++|+ ++.+|+... .+.+....+|...|..+.+ ++ .+++++.|+.+++|++.........
T Consensus 285 ~~p~~----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 285 FNPYS----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp ECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred eCCCC----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 99987 5 466665 899999987 5667777788888866655 54 5889999999999998753220000
Q ss_pred eecCCCCcceEEEeecCcccccCCCceEEEEEccCCC-EEEEEeCCceE-EEEccCCcE
Q 002405 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~-~la~ag~dg~i-~wd~~s~~w 485 (927)
....+. ..++...+.+|..+|++++|+|+|+ ++++++.||.+ +|++..+.+
T Consensus 361 ~~~~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 361 EDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp HHHHHC------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred cccccC------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 000000 0011234557889999999999999 99999999999 999976543
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8e-21 Score=210.34 Aligned_cols=229 Identities=9% Similarity=0.040 Sum_probs=172.6
Q ss_pred EeCCcEEEEeeecCccceeeecccceec-CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC--------CcceEEEe
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKEL-GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES--------ASLIRTVS 296 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~~-~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~--------~~~~~~l~ 296 (927)
..|+..+++++.|+++++||..+++... -..+.+ +++++|+ +++|+.|++|++|+.+.. +..+....
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 4688999999999999999987764431 113445 7788888 999999999999987631 22233333
Q ss_pred eecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-
Q 002405 297 LYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (927)
. +|.++|.+++|+| +|+++++|+.||+|++||+.++++......++...+.+++|+|++ ..+++|+
T Consensus 122 ~-------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----~~lasg~~ 190 (343)
T 3lrv_A 122 V-------DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS----LLLALYSP 190 (343)
T ss_dssp C-------CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS----CEEEEECT
T ss_pred c-------CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC----CEEEEEcC
Confidence 1 2778999999999 999999999999999999999888777766556679999999998 8888765
Q ss_pred --eeEEEcCCCceEE-EEEcC-CcceEEEEec---cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCc
Q 002405 374 --SMMQWDEYGYRLY-AIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (927)
Q Consensus 374 --~~~~W~~~~~~l~-~~~~~-~~~~v~~~~~---~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (927)
++++|+..+++.. ..+.+ |...|..+.| ++.+++++ |+++++||+...... ....
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-----------------~~~~ 252 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-----------------LAYP 252 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-----------------BSSC
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-----------------eeec
Confidence 8999999988776 66676 9999966655 78899988 559999998765431 0011
Q ss_pred ccccCCCceE--EEEEccCCCEEEEEeC-CceE-EEEccC--CcEEe
Q 002405 447 SYISQNWPVQ--HVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRV 487 (927)
Q Consensus 447 ~~~~~~~~I~--~va~spdG~~la~ag~-dg~i-~wd~~s--~~w~~ 487 (927)
.+..|..++. +++|+|+|++||+++. |+.+ +|++.. +.|..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 1222434444 6999999999999998 9999 999844 34654
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.87 E-value=4.4e-21 Score=216.73 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=152.8
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce--------ecCCCCeE-EEEEcC--------CCcEEEEEecCCeEEEEecc
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--------ELGSGDAV-CASIAP--------EQQILAVGTRRGVVELYDLA 286 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--------~~~h~~~v-~v~~sp--------~~~~la~g~~Dg~V~vwd~~ 286 (927)
..+.++++++++++.|+++++|+...++. +.||.+.| +++|+| ++++||+|+.|++|||||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 45577888999999999999999876532 26899999 999998 89999999999999999998
Q ss_pred CCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCC
Q 002405 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (927)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~ 365 (927)
+ +.....+.. |.++|.+++|+|++. +|++|+.||+|++||+.+++.......+ ........+++..
T Consensus 175 ~-~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~-~~~~~~~~~s~~~--- 241 (393)
T 4gq1_A 175 D-EGPILAGYP--------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT-ELVKNPWLLTLNT--- 241 (393)
T ss_dssp T-TEEEEEEEE--------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEES---
T ss_pred C-CceeeeecC--------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc-CCcccceEEeccc---
Confidence 7 666666667 899999999999875 8999999999999999887665554433 1111111111111
Q ss_pred cccccccceeEEEcCCCceEEEEEcCCcceEE--EEe-c-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEE
Q 002405 366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVL--IFS-F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (927)
Q Consensus 366 ~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~--~~~-~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (927)
..........+|...+. .+. + ++.+++++.|+++++|++..+.....+..... ..+..
T Consensus 242 ---------------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~---~~~~~ 303 (393)
T 4gq1_A 242 ---------------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM---KLGPK 303 (393)
T ss_dssp ---------------GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------
T ss_pred ---------------ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC---ccccE
Confidence 11111112234555552 232 3 77889999999999999876544221111100 00000
Q ss_pred eecCc--ccccCCCceEEEEEcc-CCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEE
Q 002405 442 LNLPV--SYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (927)
Q Consensus 442 ~~~~~--~~~~~~~~I~~va~sp-dG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~ 512 (927)
...|. ....+...+..+.+.+ ++.++++|+.||.+ +||+.+++..... ....-.|..++|. ++.|+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEECTTSSEEEEE
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcCCCCEEEEE
Confidence 00111 1112222333333333 45677788899999 9999887532211 1111247789997 5566665
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.86 E-value=1.8e-19 Score=202.91 Aligned_cols=270 Identities=11% Similarity=0.079 Sum_probs=188.0
Q ss_pred eEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEE-EEEecCcEEEEEEEEecCceeecCCCC
Q 002405 32 GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (927)
Q Consensus 32 ~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~L-av~t~dg~l~i~~l~~~~~~~~~~~~~ 109 (927)
.+++++ .+++|++|+.. .+..+..+. .++.+.+++|+|||+.| ++++.++.|++||+..+......
T Consensus 3 ~l~vs~~~d~~v~v~d~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---- 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT-SNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---- 70 (391)
T ss_dssp EEEEEETTTTEEEEEETT-TTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----
T ss_pred EEEEEcCCCCEEEEEECC-CCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----
Confidence 356666 48899999996 544443322 34456899999999987 55668999999998533211111
Q ss_pred CCCccceeeeEEeecccccccccceEEEeeccCCeEEEEe-cCCcEEEEecCCccccceeecccCCCCcccccccccCCC
Q 002405 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (927)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~-~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 188 (927)
.. .. ...-.+++++++.++++. .++.|.+|+..... ...
T Consensus 71 -------------~~----~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~-------------------- 110 (391)
T 1l0q_A 71 -------------PA----GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAG-------------------- 110 (391)
T ss_dssp -------------EC----SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEE--------------------
T ss_pred -------------EC----CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEE--------------------
Confidence 00 01 111235667788887665 46898886544221 110
Q ss_pred CCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEE-EEeeecCccceeeeccccee---cCCCCeEEEEE
Q 002405 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASI 264 (927)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~-~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~ 264 (927)
.......+.+ ++++|||+.+ +++..++.+.+||..+++.. ..|....+++|
T Consensus 111 ---------------~~~~~~~~~~----------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 165 (391)
T 1l0q_A 111 ---------------TVKTGKSPLG----------LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV 165 (391)
T ss_dssp ---------------EEECSSSEEE----------EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEE
T ss_pred ---------------EEeCCCCcce----------EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEE
Confidence 0011223444 4457888866 67777889999998765443 34444459999
Q ss_pred cCCCcEE-EEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE---cCCcEEEEEccCCe
Q 002405 265 APEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCR 340 (927)
Q Consensus 265 sp~~~~l-a~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~---~Dg~v~vW~~~~~~ 340 (927)
+|+++.+ ++++.|++|++||+.+ +.....+. +...+.+++|+|||++|++++ .|+.|++||+.+++
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 9999877 6778899999999987 65555544 456789999999999999988 68999999999998
Q ss_pred eEEEeccccccceecceecCCCCCCcccc-cccc---eeEEEcCCCceEEEEEcCCcc
Q 002405 341 LMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSE 394 (927)
Q Consensus 341 ~~~~l~~~~~~~v~s~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~~~~~~ 394 (927)
.+..+..+ ..+.+++++|++ ..+ +++. ++.+|+..++++......|..
T Consensus 236 ~~~~~~~~--~~~~~~~~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 236 ITARIPVG--PDPAGIAVTPDG----KKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEEEECC--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEEecC--CCccEEEEccCC----CEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 88888775 347889999998 544 4433 899999999998887765543
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.9e-21 Score=212.01 Aligned_cols=189 Identities=12% Similarity=-0.050 Sum_probs=147.2
Q ss_pred cCCCCeE-EEEEcC--CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 254 LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 254 ~~h~~~v-~v~~sp--~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
.+|.+.+ +++|+| +++++|+|+.||+|++||+.+ +........ .|...|++++|+|||.+||+|+.||.
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~-------~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSA-------KSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEECC-------CSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEec-------CCCCceEEEEECCCCCEEEEEcCCCE
Confidence 4676888 999999 999999999999999999987 665554433 15668999999999999999999999
Q ss_pred EEEEEccCCeeE-EEecc-ccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcC---Ccce----EEEE
Q 002405 331 LTVWSVSGCRLM-STIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG---SSER----VLIF 399 (927)
Q Consensus 331 v~vW~~~~~~~~-~~l~~-~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~---~~~~----v~~~ 399 (927)
|++||+.+++.. .++.. | ...|++++|+|++ ..+++++ ++++|+....+....... |... .+++
T Consensus 194 i~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~~g----~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDE-EAKIKEVKFADNG----YWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268 (343)
T ss_dssp EEEEESSCTTSCCEECCCCT-TSCEEEEEECTTS----SEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred EEEEECCCCCCCccEEeccC-CCCEEEEEEeCCC----CEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence 999999988877 78887 6 7899999999998 7777766 899999987765433322 2222 3666
Q ss_pred ec-cceeeeccc-CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEcc---CCCEEEEEeCCc
Q 002405 400 SF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLHG 474 (927)
Q Consensus 400 ~~-~~~~~s~s~-d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~sp---dG~~la~ag~dg 474 (927)
++ ++.+++++. |+.+++|++..... .|.. .++..++|+| +++.+++++.||
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~-------------~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTK-------------NWTK-----------DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTC-------------SEEE-----------EEEEECCC----CCCCEEEEEEETT
T ss_pred CCCCCEEEEecCCCCcEEEEEEccccc-------------ceEe-----------cCceeEecCccccccceeEEEecCC
Confidence 66 889999887 99999999754432 1211 4677888998 999999999999
Q ss_pred eE-EEE
Q 002405 475 LI-LYD 479 (927)
Q Consensus 475 ~i-~wd 479 (927)
.+ ++-
T Consensus 325 ~~~~~~ 330 (343)
T 3lrv_A 325 GIAAIL 330 (343)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 88 554
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.1e-21 Score=233.55 Aligned_cols=242 Identities=12% Similarity=0.115 Sum_probs=186.1
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC-CcceEEEeeecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCC
Q 002405 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~Dg 329 (927)
.+|.+.| +++|+|++++||+|+.||+|+|||+... +.....+.+ |.++|++++|+|+ |++|++|+.||
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~--------h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC--------CcCceEEEEecCCCCCCEEEEEeCCC
Confidence 6899999 9999999999999999999999999741 345666766 9999999999998 99999999999
Q ss_pred cEEEEEccCCe--eEEEeccccccceecceecCC--CCCCcccccccc---eeEEEcCCCc--eEEEEEcCCcceEEEEe
Q 002405 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFS 400 (927)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~s~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~~~ 400 (927)
.|++||+.++. ....+.+| ...|.+++|+|+ + ..+++|+ ++++|+..+. .......+|...|..+.
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~----~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred eEEEEECCCCcccccccccCC-CCCeEEEEECCCCCC----CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 99999999886 66677777 788999999998 6 6777776 8999998766 23344567888885554
Q ss_pred c----------------cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccC-
Q 002405 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (927)
Q Consensus 401 ~----------------~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spd- 463 (927)
+ ++.+++++.|+++++|++..+.... .....+.+|..+|.+++|+|+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~----------------~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc----------------eeeeeecCCCCcEEEEEeccCC
Confidence 4 4678999999999999987654321 123456689999999999999
Q ss_pred --CCEEEEEeCCceE-EEEccCCcE--EeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 464 --GMFLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 464 --G~~la~ag~dg~i-~wd~~s~~w--~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
|+++++|+.||.+ +||+.++.- .............+.+++|. +..++++ +.+..+++|+..
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-----s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-----GGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-----CSSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-----cCCCEEEEEecC
Confidence 9999999999999 999987631 11101111111235677886 4466665 234569999874
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.85 E-value=6.2e-20 Score=210.01 Aligned_cols=302 Identities=14% Similarity=0.129 Sum_probs=203.5
Q ss_pred cccEEEEcCCc----------cEEEEEec----CcEEEEEEEEecCceeec--CCCCCC--Ccc---ceeeeEEeecccc
Q 002405 69 ENLQAVWSPDT----------KLIAVVTS----SLYLHIFKVQITEKSIQI--GGKQPS--GLF---FIKISLVLNEQLP 127 (927)
Q Consensus 69 ~~~~v~wspDg----------~~Lav~t~----dg~l~i~~l~~~~~~~~~--~~~~~~--~~~---~~~~~~~~~~~~~ 127 (927)
+..++.|.||. .++++||. .++|.++++......... ...... +.. ...-.+... .
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~ 123 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE---I 123 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEE---E
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE---E
Confidence 44689999986 46888874 468999987632110000 000000 000 000000100 0
Q ss_pred cccccceEEEe--ecc-CCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccc
Q 002405 128 FAEKGLSVSNI--VSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (927)
Q Consensus 128 ~~~~~~~v~~i--~~~-~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 204 (927)
...+.+.|+++ .++ +..+++++.+|.|++|+......... .... ......+
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------~~~~--------~~~~~~~ 177 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------PSGE--------CQPDLRL 177 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------TTCC--------CCCSEEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------cccc--------CCCcEEe
Confidence 11233345554 443 45688888899999987653211100 0000 0000112
Q ss_pred cCCCccEEEEEEccCcceEEEEEeCCc-EEEEeeecCccceeeeccc----------ceecCCCCeE-EEEEcC-CCcEE
Q 002405 205 FPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI----------DKELGSGDAV-CASIAP-EQQIL 271 (927)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~w~~~~~----------~~~~~h~~~v-~v~~sp-~~~~l 271 (927)
..|...+.++.| +|+|+ .+++++.|+++++|+.... ....+|...+ +++|+| ++.++
T Consensus 178 ~~h~~~v~~l~~----------~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 178 RGHQKEGYGLSW----------NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp ECCSSCCCCEEE----------CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred cCCCCCeEEEEe----------CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence 244555555554 67777 8888889999999987652 1235899999 999999 78899
Q ss_pred EEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEccC-CeeEEEecc
Q 002405 272 AVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSG-CRLMSTIRQ 347 (927)
Q Consensus 272 a~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~vW~~~~-~~~~~~l~~ 347 (927)
|+|+.||.|++||+.+.. .....+.. |.++|++++|+|+|. +||+|+.||.|++||+.. +..+.++..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDA--------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEEC--------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeec--------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 999999999999998732 45666666 999999999999997 799999999999999976 567788887
Q ss_pred ccccceecceecCCCCCCcccccccc---eeEEEcCCC--------------ceEEEEEcCCcceEEEEec---cc-eee
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF---GK-CCL 406 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~--------------~~l~~~~~~~~~~v~~~~~---~~-~~~ 406 (927)
| ...|.+++|+|++. ..+++++ ++.+|+... .+++....+|...|..+.+ ++ .++
T Consensus 320 h-~~~v~~i~~sp~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 320 H-KDEIFQVQWSPHNE---TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp C-SSCEEEEEECSSCT---TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred C-CCCEEEEEECCCCC---CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 7 78899999999871 2356654 899999876 3677788889888866666 55 789
Q ss_pred ecccCCCeeeeeeee
Q 002405 407 NRGVSGMTYARQVIY 421 (927)
Q Consensus 407 s~s~d~~~~~w~~~~ 421 (927)
+++.|+.+++|++..
T Consensus 396 s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 396 SVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEETTSEEEEEEECH
T ss_pred EEECCCCEEEeEccc
Confidence 999999999999753
No 123
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=2.9e-19 Score=227.62 Aligned_cols=218 Identities=12% Similarity=-0.018 Sum_probs=163.6
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce--ecC-----------CCCeE-EEEEc-CCCcEEEEEecCCeEEEEeccCC
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELG-----------SGDAV-CASIA-PEQQILAVGTRRGVVELYDLAES 288 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--~~~-----------h~~~v-~v~~s-p~~~~la~g~~Dg~V~vwd~~~~ 288 (927)
.+++|||+.++++ .++.+.+|+...... +.+ |...+ +++|| |+|+.||+++ ++.|.+|++..
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~- 326 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG- 326 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS-
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC-
Confidence 3568999987776 477888887632211 112 33357 99999 9999999988 88999999875
Q ss_pred CcceEEEeeecCCCCCCCCC-CeeEEEECCCCCEEEEEEcCCcEE-EEEccCCeeEEEeccccccceecceecCCCCCCc
Q 002405 289 ASLIRTVSLYDWGYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (927)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~-~V~~l~~spdg~~Lasg~~Dg~v~-vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~ 366 (927)
+. ...+.. |.+ .+.+++|+ ||+.|+.++.++.+. +|++.++... .+.++ ...+..++|+|++
T Consensus 327 ~~-~~~~~~--------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~SpDG---- 390 (1045)
T 1k32_A 327 TY-VLKVPE--------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDRNG---- 390 (1045)
T ss_dssp SB-EEECSC--------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECTTS----
T ss_pred Cc-eEEccC--------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECCCC----
Confidence 43 333334 677 89999999 999999999988888 8999877543 44444 6778999999998
Q ss_pred ccccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCC----------CeeeeeeeecCCeEEEee
Q 002405 367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG----------MTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~----------~~~~w~~~~~~~~~~~~~ 430 (927)
..++++. .+.+|+..++++.....+|...+ +++++ ++.+++++.++ .+++|++..+.
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------- 463 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------- 463 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-------
Confidence 7776554 78999999998877776777666 66677 88888776643 77888764322
Q ss_pred cCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~ 481 (927)
+..+..|...+.+++|||||++|++++.++.. .|+..
T Consensus 464 --------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 464 --------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp --------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred --------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 23345677778899999999999999988776 77653
No 124
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=1.6e-18 Score=220.78 Aligned_cols=430 Identities=10% Similarity=-0.034 Sum_probs=257.4
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC----c--EEEEEE
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----L--YLHIFK 95 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d----g--~l~i~~ 95 (927)
..-.+||+ +.+|.++.+.|.+|+.. .+.. ..+. .+.+.+.+++|||||++||.++.+ + .|.+|+
T Consensus 17 ~~~~~~S~--~~iaf~~~~~l~~~~~~-gg~~-~~lt------~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d 86 (1045)
T 1k32_A 17 LLNPDIHG--DRIIFVCCDDLWEHDLK-SGST-RKIV------SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 86 (1045)
T ss_dssp CEEEEEET--TEEEEEETTEEEEEETT-TCCE-EEEE------CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred EeCcEEeC--CEEEEEECCcEEEEECC-CCcE-EEee------eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEE
Confidence 44567884 58888877899999995 3322 2222 134667899999999999988653 3 677777
Q ss_pred EEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecC----CcEEEEecCCccccceeecc
Q 002405 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD----GSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~d----g~i~~~~w~~~~~~~~~~~~ 171 (927)
+..+.. .....+... ...+ .......++++|++.++++..+ +...++.|+........
T Consensus 87 ~~~g~~-~~lt~~~~~----------~~~~----~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 148 (1045)
T 1k32_A 87 GENGEI-KRITYFSGK----------STGR----RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP--- 148 (1045)
T ss_dssp TTTTEE-EECCCCCEE----------EETT----EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---
T ss_pred CCCCCe-EEcccCCCc----------cccc----ccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE---
Confidence 653221 111111100 0000 0000224677888744444433 33444445432211111
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec------------
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK------------ 239 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d------------ 239 (927)
+..... .. +.++| | ++++++.+
T Consensus 149 --------------------------------l~~~~~--~~----------~~~sp-G-~l~~~~~~~~~~~~~~~~g~ 182 (1045)
T 1k32_A 149 --------------------------------LNLGPA--TH----------ILFAD-G-RRVIGRNTFELPHWKGYRGG 182 (1045)
T ss_dssp --------------------------------CCSCSC--SE----------EEEET-T-EEEEEESCSCCTTSTTCCST
T ss_pred --------------------------------ecCCCc--ce----------eeeCC-C-EEEEeccCCCccccccccCC
Confidence 000000 11 22456 6 55554422
Q ss_pred Cccceeeecc---cceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEE
Q 002405 240 KGLKLAEFIK---IDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (927)
Q Consensus 240 ~~~~~w~~~~---~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (927)
...++|.... ...+.+|...+ +++|+++ +++++++.||+++||.++..+.....+.. |. .+...+|
T Consensus 183 ~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--------~~-~~~~~~~ 252 (1045)
T 1k32_A 183 TRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS--------FT-DYYPRHL 252 (1045)
T ss_dssp TCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC--------CC-SSCEEEE
T ss_pred CcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC--------CC-CcceeeE
Confidence 2334553222 11236788888 9999999 77788889999999998753444454444 44 4677899
Q ss_pred CCCCCEEEEEEcCCcEEEEEccCCeeEEEeccc----------cccceecceec-CCCCCCcccccccc--eeEEEcCCC
Q 002405 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI----------SLSSISSPIVK-PNQDCKYEPLMSGT--SMMQWDEYG 382 (927)
Q Consensus 316 spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~----------~~~~v~s~~~s-p~~~~~~~~l~sg~--~~~~W~~~~ 382 (927)
||||+.||.+. ++.+.+|++.+..+. .+.++ +...+.+++|+ |++ ..++.+. .+.+|+..+
T Consensus 253 SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG----~~la~~~~~~i~~~~~~~ 326 (1045)
T 1k32_A 253 NTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG----DLIAFVSRGQAFIQDVSG 326 (1045)
T ss_dssp EESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG----GCEEEEETTEEEEECTTS
T ss_pred cCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCC----CEEEEEEcCEEEEEcCCC
Confidence 99999999985 799999999655443 55542 13368899999 998 6665544 788899887
Q ss_pred ceEEEEEcCCcc-eEEEEec--cceeeecccCCCee-eeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE
Q 002405 383 YRLYAIEEGSSE-RVLIFSF--GKCCLNRGVSGMTY-ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 383 ~~l~~~~~~~~~-~v~~~~~--~~~~~s~s~d~~~~-~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
++... ...|.. .+..+.+ ++.++.++.+..+. +|++..+. +..+.+|...+.++
T Consensus 327 ~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~---------------------~~~l~~~~~~~~~~ 384 (1045)
T 1k32_A 327 TYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---------------------AEKFEENLGNVFAM 384 (1045)
T ss_dssp SBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---------------------EEECCCCCCSEEEE
T ss_pred CceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC---------------------ceEecCCccceeee
Confidence 76544 445555 6655555 45666666544444 44432221 12233677889999
Q ss_pred EEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeec-----CCCeEEEEEeeCCC
Q 002405 459 AASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYID-----SSNTYELLFYPRYH 530 (927)
Q Consensus 459 a~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~-----~~~~~~l~l~~~~~ 530 (927)
+|||||++||+++.++.+ +||+.+++.+..... +. ..+..+.|. +..+++++... ......+++|+...
T Consensus 385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~--~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-RE--AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SS--SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EECCCCCEEEEECCCCeEEEEECCCCceEEeccC-CC--CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 999999999999999999 999999876543211 11 124567786 45676664432 13456899998741
Q ss_pred CCccceeE--EEecCCccEEEEccCCEEEEEEcCCeEEEEE
Q 002405 531 LDQSSLLC--RKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (927)
Q Consensus 531 l~~~~~~~--~~~~~~~~~~~~~~~~~l~v~~~d~~i~l~~ 569 (927)
..... ........+.+++.|..|+..+.++...+|+
T Consensus 462 ---g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 462 ---RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp ---TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred ---CcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 11110 0101112256788899988888777766664
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=5.5e-19 Score=189.17 Aligned_cols=147 Identities=6% Similarity=0.003 Sum_probs=107.6
Q ss_pred EEEEEe---CCcEEEEeeecCccceeeeccccee---cCCC---CeE-EEEEcCCCcEE------------EEEecCCeE
Q 002405 223 LFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKE---LGSG---DAV-CASIAPEQQIL------------AVGTRRGVV 280 (927)
Q Consensus 223 ~~~~s~---dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~---~~v-~v~~sp~~~~l------------a~g~~Dg~V 280 (927)
.+++++ ||.++++++.|+++++||..+++.. .+|. ..+ +++|+|+|+++ |+|+.|++|
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 355567 7899999999999999999888654 3433 345 78999999986 678899999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp 360 (927)
++||..+ +..+..+.. ....+|.+.+.+.+++ |..+|+|+.|++|+|||+.+++++.++++|....+.+++|+|
T Consensus 263 klWd~~t-gk~l~v~~~---~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 263 IVINPKT-TLSVGVMLY---CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp EEEETTT-TEEEEEEEE---CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred EEEECCC-CEEEEEEEe---eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 9999987 766655432 1122477766555554 889999999999999999999999999988433344588999
Q ss_pred CCCCCcccccccc---eeEEEc
Q 002405 361 NQDCKYEPLMSGT---SMMQWD 379 (927)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~ 379 (927)
++ ..+++|+ ++++|+
T Consensus 337 DG----~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 337 TD----SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SS----SEEEEECTTSCEEEEE
T ss_pred CC----CEEEEEECCCcEEEec
Confidence 87 6666555 566664
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.83 E-value=1e-18 Score=199.65 Aligned_cols=229 Identities=11% Similarity=0.085 Sum_probs=169.8
Q ss_pred CCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEE-EEecCCeE
Q 002405 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILA-VGTRRGVV 280 (927)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la-~g~~Dg~V 280 (927)
.+...+.++.+ +++|+++++++.++.+++|+..+.+.. ..|...+ +++|+|+++.++ +++.|++|
T Consensus 167 ~~~~~v~~~~~----------~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 236 (433)
T 3bws_A 167 KKLGFVETISI----------PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDI 236 (433)
T ss_dssp TTCCEEEEEEE----------GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCceeEEEE----------cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcE
Confidence 45556766554 688999999999999999998765433 5677778 999999999874 55589999
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE--------cCCcEEEEEccCCeeEEEeccccccc
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--------KSRGLTVWSVSGCRLMSTIRQISLSS 352 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~--------~Dg~v~vW~~~~~~~~~~l~~~~~~~ 352 (927)
++||+.+ ++.+..+.. .+.+.+++|+|||+.|++++ .||.|++||+.+++....+.. ...
T Consensus 237 ~~~d~~~-~~~~~~~~~---------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~ 304 (433)
T 3bws_A 237 SVIDRKT-KLEIRKTDK---------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGN 304 (433)
T ss_dssp EEEETTT-TEEEEECCC---------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EEC
T ss_pred EEEECCC-CcEEEEecC---------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCC
Confidence 9999987 655554443 45689999999999999988 488999999998887766632 346
Q ss_pred eecceecCCCCCCcc-cccccc---eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeeccc---------------
Q 002405 353 ISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV--------------- 410 (927)
Q Consensus 353 v~s~~~sp~~~~~~~-~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~--------------- 410 (927)
+.+++|+|++ . .++++. ++.+|+..++++..... +...+ +++++ ++.+++++.
T Consensus 305 ~~~~~~~~~g----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 305 KRHIVSGNTE----NKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEEEEECSST----TEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred cceEEECCCC----CEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 7889999987 4 334432 89999999888877665 34445 44555 666665554
Q ss_pred CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC-CceE-EEEccC
Q 002405 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ 482 (927)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~-dg~i-~wd~~s 482 (927)
|+.+++|+...+.. ...+. +...+.+++|+|||++|++++. ||.+ +|++..
T Consensus 380 dg~v~~~d~~~~~~--------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTDTV--------------------KEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTTEE--------------------EEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCCcE--------------------EEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 56888888644322 11122 2346899999999999998885 9999 999753
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=1.9e-18 Score=197.35 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=195.3
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee--------cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEE
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~--------~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~ 294 (927)
++++|++++++++..++++++||..+++.. .+|...+ +++|+|+++++++++.||+|++||+++ ++.+..
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence 455787888888888889999998765433 3788888 999999999999999999999999987 777777
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEE-EEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Las-g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
+.. |...+.+++|+|||+.+++ ++.|+.|++||+.+++....+..+ ..+.+++++|++ ..++++.
T Consensus 207 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g----~~l~~~~ 272 (433)
T 3bws_A 207 VDL--------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDG----KELYIAQ 272 (433)
T ss_dssp EEC--------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTS----SEEEEEE
T ss_pred EcC--------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCC----CEEEEEE
Confidence 776 8899999999999998855 447899999999998888887764 458899999998 5555443
Q ss_pred -----------eeEEEcCCCceEEEEEcCCcceE--EEEec-cc-eeeecccCCCeeeeeeeecCCeEEEeecCCCCcce
Q 002405 374 -----------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (927)
Q Consensus 374 -----------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~-~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (927)
.+.+|+..++++.... .|...+ .++++ ++ .+++++.|+.+++|++..+..
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-------------- 337 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-------------- 337 (433)
T ss_dssp EESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred CCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--------------
Confidence 6779999988876655 233344 44555 54 456778999999999753321
Q ss_pred EEEeecCcccccCCCceEEEEEccCCCEEEEEeC---------------CceE-EEEccCCcEEe-eCCccceeeeEEEE
Q 002405 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---------------HGLI-LYDIRQKKWRV-FGDITQEQKIQSKG 501 (927)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~---------------dg~i-~wd~~s~~w~~-f~~~~~e~~~~v~~ 501 (927)
.....+...+.+++|+|||+++++++. ||.+ +||..+++... +.. ...+.+
T Consensus 338 -------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-----~~~~~~ 405 (433)
T 3bws_A 338 -------QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-----GNQPTG 405 (433)
T ss_dssp -------EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-----SSSEEE
T ss_pred -------EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-----CCCCce
Confidence 112235567899999999999999887 4688 99998876432 221 113567
Q ss_pred EEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 502 LLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 502 ~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
+.|. ++.+++++. .+..+++|+.+
T Consensus 406 ~~~s~dg~~l~~~~~----~d~~i~v~~~~ 431 (433)
T 3bws_A 406 LDVSPDNRYLVISDF----LDHQIRVYRRD 431 (433)
T ss_dssp EEECTTSCEEEEEET----TTTEEEEEEET
T ss_pred EEEcCCCCEEEEEEC----CCCeEEEEEec
Confidence 8885 456666532 34578888653
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=2.6e-18 Score=193.35 Aligned_cols=223 Identities=9% Similarity=0.078 Sum_probs=167.3
Q ss_pred EEEEeCCcEE-EEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEE-EEecCCeEEEEeccCCCcceEEEee
Q 002405 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la-~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
++++|||+.+ ++++.++++++||..+++.. ..+. .+ +++|+|+++.|+ +++.|++|++||+.+ ++.+..+..
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~ 114 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT 114 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEEEEeC
Confidence 4458899865 56668999999998766543 3344 56 999999999875 455679999999987 666665554
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEE-EEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc-cccc--
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT-- 373 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~L-asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l-~sg~-- 373 (927)
...+.+++|+|||+.| ++++.|+.|++||+.+++....+..+ ..+.+++|+|++ ..+ +++.
T Consensus 115 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg----~~l~~~~~~~ 179 (391)
T 1l0q_A 115 ---------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDG----TKVYVANFDS 179 (391)
T ss_dssp ---------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTS----SEEEEEETTT
T ss_pred ---------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC--CCcceEEECCCC----CEEEEEeCCC
Confidence 4568999999999977 67888999999999999888888765 456889999998 544 4433
Q ss_pred -eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecc---cCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCc
Q 002405 374 -SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (927)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s---~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (927)
++.+|+..+++....... ...+ +++++ ++.+++++ .++.+++|++..+.. ..
T Consensus 180 ~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~--------------------~~ 238 (391)
T 1l0q_A 180 MSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--------------------TA 238 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--------------------EE
T ss_pred CEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE--------------------EE
Confidence 799999999888776654 3345 45555 77777776 688999999754322 11
Q ss_pred ccccCCCceEEEEEccCCCEE-EEEeCCceE-EEEccCCcE
Q 002405 447 SYISQNWPVQHVAASKDGMFL-AVAGLHGLI-LYDIRQKKW 485 (927)
Q Consensus 447 ~~~~~~~~I~~va~spdG~~l-a~ag~dg~i-~wd~~s~~w 485 (927)
.+..|. .+.+++|+|||+++ ++++.|+.+ +||+.+++.
T Consensus 239 ~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 239 RIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 222333 46889999999988 566789999 999988764
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=3.9e-17 Score=191.74 Aligned_cols=319 Identities=10% Similarity=0.008 Sum_probs=214.4
Q ss_pred EEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCc
Q 002405 74 VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGS 153 (927)
Q Consensus 74 ~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~ 153 (927)
.|+|++..++++..+++|.+||...+.....+ . . +.......++++++.+++++.++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i-----------------~----~-g~~~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-----------------D----T-GYAVHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEE-----------------E----C-STTEEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEE-----------------e----c-CcccceEEECCCCCEEEEECCCCe
Confidence 48999999999999999999987543311111 0 0 111223467889999999999999
Q ss_pred EEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe----C
Q 002405 154 LYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS----N 229 (927)
Q Consensus 154 i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~----d 229 (927)
|.+|+.+....... .. + ........ ++++| |
T Consensus 202 V~v~D~~~~t~~~~------------~~--------------------i---~~g~~p~~----------va~sp~~~~d 236 (543)
T 1nir_A 202 IDMIDLWAKEPTKV------------AE--------------------I---KIGIEARS----------VESSKFKGYE 236 (543)
T ss_dssp EEEEETTSSSCEEE------------EE--------------------E---ECCSEEEE----------EEECCSTTCT
T ss_pred EEEEECcCCCCcEE------------EE--------------------E---ecCCCcce----------EEeCCCcCCC
Confidence 99877531221111 00 0 01122333 45688 9
Q ss_pred CcEEEEee-ecCccceeeeccccee---cC----------CCC-eE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcce
Q 002405 230 GQLMSCSV-SKKGLKLAEFIKIDKE---LG----------SGD-AV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLI 292 (927)
Q Consensus 230 G~~~~~~~-~d~~~~~w~~~~~~~~---~~----------h~~-~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~ 292 (927)
|++++++. .++++.+||..+.+.. .. |.. .+ .++++|+++ ++++...+|+|.+||+.+ .+.+
T Consensus 237 g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~-~~~l 315 (543)
T 1nir_A 237 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-IDNL 315 (543)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT-SSSC
T ss_pred CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC-CCcc
Confidence 99887776 4789999987665432 11 222 56 899999755 577788899999999987 4433
Q ss_pred EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEccCCeeEEEeccc---cccceecceecCCCCCCccc
Q 002405 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEP 368 (927)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~~~~~~~~~l~~~---~~~~v~s~~~sp~~~~~~~~ 368 (927)
..... . +...+.+++|+|||++|++++ .+++|++||+.++++..++... |....... ++|++. ..
T Consensus 316 ~~~~i-~------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g---~~ 384 (543)
T 1nir_A 316 TVTSI-G------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG---PV 384 (543)
T ss_dssp EEEEE-E------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE---EE
T ss_pred eeEEe-c------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc---cE
Confidence 31111 0 456678899999999776555 5799999999999998888742 12211111 456631 45
Q ss_pred cccc----ceeEEEcCCC-------ceEEEEEcCCcceE--EEEec-cceeeecc-------cCCCeeeeeeeecCCeEE
Q 002405 369 LMSG----TSMMQWDEYG-------YRLYAIEEGSSERV--LIFSF-GKCCLNRG-------VSGMTYARQVIYGEDRLL 427 (927)
Q Consensus 369 l~sg----~~~~~W~~~~-------~~l~~~~~~~~~~v--~~~~~-~~~~~s~s-------~d~~~~~w~~~~~~~~~~ 427 (927)
++++ .++.+|+.++ .+++..+.+|.... +.+++ ++.+.+++ .+.++.+||+.+.+...
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~- 463 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY- 463 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-
Confidence 5553 2889999987 78889988876554 66667 88888776 26799999987665410
Q ss_pred EeecCCCCcceEEEeecCc----ccccCCCceEEEEEccCCCEEEEEe-----CCceE-EEEccCCcEE
Q 002405 428 VVQSEDTDELKILHLNLPV----SYISQNWPVQHVAASKDGMFLAVAG-----LHGLI-LYDIRQKKWR 486 (927)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~----~~~~~~~~I~~va~spdG~~la~ag-----~dg~i-~wd~~s~~w~ 486 (927)
+. +|- .+..+...+.+++|+|||++++++. .++.+ +||..+++.+
T Consensus 464 ------------~~--~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 464 ------------QV--LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp ------------EE--ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ------------EE--eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 00 010 0124566799999999999999873 47888 9999998754
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=7.6e-18 Score=191.50 Aligned_cols=202 Identities=13% Similarity=0.060 Sum_probs=147.4
Q ss_pred EEEEeCCcEEEEeeecC---ccceeeeccccee--cCCCCeE-EEEEcCCCcEEE-EEecCCe--EEEEeccCCCcceEE
Q 002405 224 FVLYSNGQLMSCSVSKK---GLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILA-VGTRRGV--VELYDLAESASLIRT 294 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~---~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la-~g~~Dg~--V~vwd~~~~~~~~~~ 294 (927)
++++|||+.+++++.++ ++++||..+++.. .+|...+ +++|||||+.|| +++.||. |.+||+.+ +. ...
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~~ 261 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IRQ 261 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CC-EEE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CC-EEe
Confidence 34588999888888764 7889998766443 5677778 999999999888 6666665 88999876 43 344
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccc
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-g--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (927)
+.. |.+.+.+++|||||+.|++++.+ + .|.+||+.++.. ..+..+ ...+.+++|+|++ +.++.
T Consensus 262 l~~--------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdG----~~l~~ 327 (415)
T 2hqs_A 262 VTD--------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFMVM 327 (415)
T ss_dssp CCC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS-SSEEEEEEECTTS----SEEEE
T ss_pred CcC--------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC-CCcccCeEECCCC----CEEEE
Confidence 555 78899999999999999988864 4 577778887753 334444 4578889999998 65554
Q ss_pred cc------eeEEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCC---CeeeeeeeecCCeEEEeecCCCCcceE
Q 002405 372 GT------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKI 439 (927)
Q Consensus 372 g~------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (927)
+. .+.+|+..++++.. +..+. .+ ..+++ ++.+++++.++ .+++|++. +..
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~-l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~--------------- 389 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQV-LSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF--------------- 389 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEE-CCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC---------------
T ss_pred EECcCCceEEEEEECCCCCEEE-ecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc---------------
Confidence 33 68899999887744 33333 34 55666 88888877766 56677653 222
Q ss_pred EEeecCcccccCCCceEEEEEccCC
Q 002405 440 LHLNLPVSYISQNWPVQHVAASKDG 464 (927)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~spdG 464 (927)
...+.+|.+.|++++|||--
T Consensus 390 -----~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 390 -----KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -----EEECCCSSSEEEEEEECCCC
T ss_pred -----EEEeeCCCCCCcCCcccccc
Confidence 34566788999999999964
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.77 E-value=7e-17 Score=198.07 Aligned_cols=338 Identities=13% Similarity=0.079 Sum_probs=202.4
Q ss_pred ccccEEEEcCCccEEEEEec-Cc-----EEEEEEEEecCceeecCCC--CCCCccceeeeEEeeccccccc-ccceEEEe
Q 002405 68 GENLQAVWSPDTKLIAVVTS-SL-----YLHIFKVQITEKSIQIGGK--QPSGLFFIKISLVLNEQLPFAE-KGLSVSNI 138 (927)
Q Consensus 68 G~~~~v~wspDg~~Lav~t~-dg-----~l~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i 138 (927)
+.+.+++|||||++||+++. +| .|++|++..+........+ ...+..+..-.-.........+ ....-.++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999999999998 87 8999998755433222111 1000000000000000000000 00112367
Q ss_pred eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEcc
Q 002405 139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (927)
Q Consensus 139 ~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (927)
++|++.+++++. +.|.+|+.++...... ..+..+...+.++.
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------------~~l~~~~~~~~~~~--- 158 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------------RQLTHGEGFATDAK--- 158 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------------CBCCCSSSCEEEEE---
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------------EEcccCCccccccc---
Confidence 888988888776 8887765543200010 01122233455544
Q ss_pred CcceEEEEEeCCcEEEEeeecCccceeeeccccee---cCCCC----------------eE-EEEEcCCCcEEEEEecCC
Q 002405 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGD----------------AV-CASIAPEQQILAVGTRRG 278 (927)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~----------------~v-~v~~sp~~~~la~g~~Dg 278 (927)
++|||+.+++++. +.+.+|+..+++.. ..+.. .+ +++|||||+.||+++.|+
T Consensus 159 -------~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 159 -------LSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp -------ECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred -------CCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 5788888777664 57888887654332 12222 13 789999999999998876
Q ss_pred ---------------------------------eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 002405 279 ---------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (927)
Q Consensus 279 ---------------------------------~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (927)
.|.+||+++. .....+... ..|...+.+++| |||+.|+++
T Consensus 231 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~~~ 303 (741)
T 2ecf_A 231 SPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWIDLG-----KEQDIYLARVNW-RDPQHLSFQ 303 (741)
T ss_dssp TTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEECCC-----SCSSEEEEEEEE-EETTEEEEE
T ss_pred CCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEecCC-----CCcceEEEEEEe-CCCCEEEEE
Confidence 7888887641 222222210 127788999999 999999987
Q ss_pred Ec-----CCcEEEEEccCCeeEEEecccccc---ceecceecCCCCCCcccccccc---eeEEEc--CCCceEEEEEcCC
Q 002405 326 WK-----SRGLTVWSVSGCRLMSTIRQISLS---SISSPIVKPNQDCKYEPLMSGT---SMMQWD--EYGYRLYAIEEGS 392 (927)
Q Consensus 326 ~~-----Dg~v~vW~~~~~~~~~~l~~~~~~---~v~s~~~sp~~~~~~~~l~sg~---~~~~W~--~~~~~l~~~~~~~ 392 (927)
+. +..|.+||+.++++...+..+... .+.+++|+|++ ..++++. ...+|. ..+. ...+..|
T Consensus 304 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~ 377 (741)
T 2ecf_A 304 RQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK--AAALTHG 377 (741)
T ss_dssp EEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC--EEESCCS
T ss_pred EecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC--eeeeeec
Confidence 65 467999999988877766655322 35689999998 5555443 345554 4444 5556666
Q ss_pred cceEE---EEec-ccee-eecccCC--CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCC
Q 002405 393 SERVL---IFSF-GKCC-LNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 465 (927)
Q Consensus 393 ~~~v~---~~~~-~~~~-~s~s~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~ 465 (927)
...+. .+++ ++.+ ++++.++ .+++|.+...... +..+.. ...+.+++|||||+
T Consensus 378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~-------------------~~~l~~-~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ-------------------PQRLSK-APGMHSASFARNAS 437 (741)
T ss_dssp SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC-------------------CEECCC-SCSEEEEEECTTSS
T ss_pred ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC-------------------eeeccc-CCCceEEEECCCCC
Confidence 65553 4666 6655 4555555 7889987642221 222323 45578999999999
Q ss_pred EEEEEeCC----ceE-EEEccCCc
Q 002405 466 FLAVAGLH----GLI-LYDIRQKK 484 (927)
Q Consensus 466 ~la~ag~d----g~i-~wd~~s~~ 484 (927)
+|++...+ +.+ +|+..++.
T Consensus 438 ~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEETTEEEEEEEEETTSCE
T ss_pred EEEEEecCCCCCCeEEEEEcCCCe
Confidence 99877544 344 66665443
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.76 E-value=5.9e-17 Score=190.22 Aligned_cols=324 Identities=8% Similarity=0.047 Sum_probs=205.2
Q ss_pred EEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEE--EecC
Q 002405 24 IIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV--QITE 100 (927)
Q Consensus 24 iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l--~~~~ 100 (927)
.-.|+|+|.++++. .+++|.+||.. .+..+..+.- .+. ...++|||||++|++++.++.|.+||+ ....
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDT------GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEEC------STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEec------Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 33589999988888 47899999996 5554444421 111 458999999999999999999999998 3211
Q ss_pred ceeecCCCCCCCccceeeeEEeecccccccccceEEEeec----cCCeEEEEec-CCcEEEEecCCccccceeecccCCC
Q 002405 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSND 175 (927)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~ 175 (927)
. +. .+ . .+....-.++++ +++.++++.. ++.|.+|+.. .......
T Consensus 214 ~-------------~~----~i----~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~--t~~~~~~------ 263 (543)
T 1nir_A 214 K-------------VA----EI----K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE--TLEPKQI------ 263 (543)
T ss_dssp E-------------EE----EE----E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT--TCCEEEE------
T ss_pred E-------------EE----EE----e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc--cccccee------
Confidence 0 00 00 0 011112236777 8889999875 7898876533 2221110
Q ss_pred CcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcE-EEEeeecCccceeeeccccee-
Q 002405 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL-MSCSVSKKGLKLAEFIKIDKE- 253 (927)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~-~~~~~~d~~~~~w~~~~~~~~- 253 (927)
+...+...+. .-+.....+.. ++++++|+. +++...++++.+||..+.+..
T Consensus 264 ---i~~~g~~~~~--------------~~~~~~~~v~~----------i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 264 ---VSTRGMTVDT--------------QTYHPEPRVAA----------IIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp ---EECCEECSSS--------------CCEESCCCEEE----------EEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred ---ecccCcccCc--------------cccccCCceEE----------EEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 0000000000 00001113333 345666554 444456677888876543221
Q ss_pred ---cCCCCeE-EEEEcCCCcEEEEE-ecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC-CCEEEEEE-
Q 002405 254 ---LGSGDAV-CASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGW- 326 (927)
Q Consensus 254 ---~~h~~~v-~v~~sp~~~~la~g-~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~- 326 (927)
..+.... .++|+|+|+++.++ ..+++|.+||..+ ++++.++..... .|.+....+ ++|+ |..++++.
T Consensus 317 ~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~----ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 317 VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKT----PHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSS----BCCTTCEEE-EETTTEEEEEEEBS
T ss_pred eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCC----CCCCCCccc-CCCCCccEEEeccC
Confidence 2344455 89999999976554 5689999999988 777777664211 266544443 4787 66777775
Q ss_pred cCCcEEEEEccC-------CeeEEEeccccccceecceecCCCCCCcccccccc----------eeEEEcCCCceEE-EE
Q 002405 327 KSRGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----------SMMQWDEYGYRLY-AI 388 (927)
Q Consensus 327 ~Dg~v~vW~~~~-------~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----------~~~~W~~~~~~l~-~~ 388 (927)
.|++|+||++.+ .+++.++.+| ...+..++++|++ ..+.++. ++.+|+..+++.. ..
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-g~~~~~v~~~pdg----~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 465 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 465 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTC----CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcC-CCCceEEEcCCCC----CcEEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence 579999999987 7889999987 4567889999998 5554432 8999999877654 33
Q ss_pred E--------cCCcceEEEEec---cceeeec-----ccCCCeeeeeeeecC
Q 002405 389 E--------EGSSERVLIFSF---GKCCLNR-----GVSGMTYARQVIYGE 423 (927)
Q Consensus 389 ~--------~~~~~~v~~~~~---~~~~~s~-----s~d~~~~~w~~~~~~ 423 (927)
+ ..+..+++.+.| |+.+..+ +.++++.+||..+++
T Consensus 466 ~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 466 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 2 244567766665 7777644 347889999865543
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=3.5e-17 Score=200.14 Aligned_cols=315 Identities=11% Similarity=0.049 Sum_probs=182.8
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEE
Q 002405 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (927)
Q Consensus 69 ~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~ 148 (927)
...+++|||||+++++ +.||.|++|++..+........+..... ...-.++++|++.++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~------------------~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESL------------------RAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTT------------------TCSEEEECTTSSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccccc------------------ccceEEECCCCCEEEEE
Confidence 3568999999997776 7899999999876554332222111000 01123678889988888
Q ss_pred ecC---------CcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccC
Q 002405 149 LSD---------GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (927)
Q Consensus 149 ~~d---------g~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 219 (927)
+.+ +.+.+|+.++.. ...+.... .+...+..
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~--------------------------------~~~~~~~~------ 118 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGD--PQSLDPPE--------------------------------VSNAKLQY------ 118 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCC--CEECCCTT--------------------------------CCSCCCSB------
T ss_pred ecCccceeecceeeEEEEECCCCc--eEeccCCc--------------------------------cccccccc------
Confidence 764 455554433221 11111000 01111112
Q ss_pred cceEEEEEeCCcEEEEeeecCccceeeeccccee---cC-CCCe------------------EEEEEcCCCcEEEEEecC
Q 002405 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-SGDA------------------VCASIAPEQQILAVGTRR 277 (927)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~-h~~~------------------v~v~~sp~~~~la~g~~D 277 (927)
++++|||+.+++++. +++.+|+...++.. .. +... .+++|||||+.||+++.|
T Consensus 119 ----~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 119 ----AGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp ----CCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ----cEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 234677776666554 46666765543321 11 1111 367788888877777654
Q ss_pred C----------------------------------eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE
Q 002405 278 G----------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 278 g----------------------------------~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (927)
+ +|++||+.+ ++....+.... ....|.+.+.+++|||||+.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPD--DPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCc--cCCCccceeEEEEEeCCCeEEE
Confidence 3 789999876 54444444300 0011367899999999999998
Q ss_pred EEEcC----CcEEEEEccCCeeEEEeccccccce----ecceecCCCCCCccccccc--c---------eeEEEc-CCCc
Q 002405 324 VGWKS----RGLTVWSVSGCRLMSTIRQISLSSI----SSPIVKPNQDCKYEPLMSG--T---------SMMQWD-EYGY 383 (927)
Q Consensus 324 sg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v----~s~~~sp~~~~~~~~l~sg--~---------~~~~W~-~~~~ 383 (927)
+...+ ..|.+||+.++++...+..++...+ .+++|+|++ +.++.. . .+..|+ ..++
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 346 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSSSQPNS 346 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEeccCCC
Confidence 77543 5799999998877666554323334 378999998 544321 1 355677 3444
Q ss_pred e---EEEEEcCCcce--EEEEec-cceeeeccc-C--CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccccc---C
Q 002405 384 R---LYAIEEGSSER--VLIFSF-GKCCLNRGV-S--GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---Q 451 (927)
Q Consensus 384 ~---l~~~~~~~~~~--v~~~~~-~~~~~s~s~-d--~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~ 451 (927)
+ ......++... +..+++ ++.++..+. + +..++|.+...... .+..+.. |
T Consensus 347 ~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~l~~~~~~ 408 (723)
T 1xfd_A 347 SNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------------------NRQCLSCDLVE 408 (723)
T ss_dssp SSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC------------------CCBCSSTTSSS
T ss_pred CccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------------------CcceecccccC
Confidence 4 22222222222 246677 777765444 3 67888887643210 0122222 5
Q ss_pred CCceEEEEEccCCCEEEEEeC
Q 002405 452 NWPVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 452 ~~~I~~va~spdG~~la~ag~ 472 (927)
...+..++|||||++++....
T Consensus 409 ~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 409 NCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SCCCCEEEECTTSSEEEEECC
T ss_pred CCCeEEEEECCCCCEEEEEcc
Confidence 666889999999999987654
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.72 E-value=4.4e-16 Score=176.92 Aligned_cols=223 Identities=15% Similarity=0.101 Sum_probs=159.5
Q ss_pred Cccceeeeccc--ceecCCCCeE-EEEEcCCCcEEEEEecCC---eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEE
Q 002405 240 KGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (927)
Q Consensus 240 ~~~~~w~~~~~--~~~~~h~~~v-~v~~sp~~~~la~g~~Dg---~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (927)
+++++||.... ..+.+|...+ +++|||+|+.||+++.|+ +|++||+.+ ++. ..+.. |.+.+.++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~--------~~~~~~~~ 228 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVAS--------FPRHNGAP 228 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEEC--------CSSCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeec--------CCCcccCE
Confidence 56778876532 2235688888 999999999999999885 999999987 544 34555 78899999
Q ss_pred EECCCCCEEE-EEEcCCc--EEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc------eeEEEcCCCce
Q 002405 314 AWTPDNSAFA-VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYR 384 (927)
Q Consensus 314 ~~spdg~~La-sg~~Dg~--v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~ 384 (927)
+|||||+.|| +++.|+. |.+||+.++++ ..+..| ...+.+++|+|++ ..++.++ .+..|+..+++
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDS----QNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCC----CEEEEEECCCCCcEEEEEECCCCC
Confidence 9999999888 6666655 99999988765 556665 5678999999998 5554332 56677888776
Q ss_pred EEEEEcCCcceE--EEEec-cceeeecccC---CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE
Q 002405 385 LYAIEEGSSERV--LIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (927)
Q Consensus 385 l~~~~~~~~~~v--~~~~~-~~~~~s~s~d---~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (927)
... ...+...+ ..+++ ++.+++++.+ ..+++|++..+.. ..+..+. .+.++
T Consensus 303 ~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------~~l~~~~-~~~~~ 359 (415)
T 2hqs_A 303 PQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------QVLSSTF-LDETP 359 (415)
T ss_dssp CEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------EECCCSS-SCEEE
T ss_pred EEE-EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------EEecCCC-CcCCe
Confidence 433 33344455 55566 8888777654 4677777654332 1223333 78999
Q ss_pred EEccCCCEEEEEeCCc---eE-EEEccCCcEEeeCCccceeeeEEEEEEee
Q 002405 459 AASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (927)
Q Consensus 459 a~spdG~~la~ag~dg---~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~ 505 (927)
+|+|||++|++++.++ .+ +||+.++..+.+... + -.+..++|.
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~--~--~~v~~~~~~ 406 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT--D--GQVKFPAWS 406 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS--S--SEEEEEEEC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC--C--CCCcCCccc
Confidence 9999999999998877 67 999987766554331 1 235566664
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=1.1e-15 Score=186.24 Aligned_cols=229 Identities=13% Similarity=0.070 Sum_probs=149.5
Q ss_pred EEEEeCCcEEEEeeecCccceeeecc-----ccee---cCCCC-e-------------E-EEEEcCCCcEEEEEe-----
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIK-----IDKE---LGSGD-A-------------V-CASIAPEQQILAVGT----- 275 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~-----~~~~---~~h~~-~-------------v-~v~~sp~~~~la~g~----- 275 (927)
+.++|||+.+++. .++++.+|+..+ ++.. ..+.. . + +++|||||++||+++
T Consensus 126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~ 204 (706)
T 2z3z_A 126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM 204 (706)
T ss_dssp CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence 3458899888774 678888898766 4332 12222 1 4 899999999999998
Q ss_pred ----------------------------cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 276 ----------------------------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 276 ----------------------------~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.+++|.+||+++ +........ ..|...+.+++|||||+.|++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCC------SCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccC------CCCceeEeeEEEECCCCEEEEEEe
Confidence 446899999976 443221111 126778999999999999999888
Q ss_pred CC-----cEEEEEccCCeeEEEec-ccccc---ceecceecC--CCCCCcccccccc---eeEEEcCC-CceEEEEEcCC
Q 002405 328 SR-----GLTVWSVSGCRLMSTIR-QISLS---SISSPIVKP--NQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGS 392 (927)
Q Consensus 328 Dg-----~v~vW~~~~~~~~~~l~-~~~~~---~v~s~~~sp--~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~ 392 (927)
|+ .|.+||+.++.....+. ..+.. .+.+++|+| ++ ..+.++. ...+|..+ .++.+..+..|
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC----EEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 76 89999998883333332 22122 246789999 87 5665443 56777654 44555555565
Q ss_pred cceE---EEEec-cceeeec-ccCC--CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCC
Q 002405 393 SERV---LIFSF-GKCCLNR-GVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 465 (927)
Q Consensus 393 ~~~v---~~~~~-~~~~~s~-s~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~ 465 (927)
...+ ..+++ ++.++.+ +.++ ...+|.+...... +. ...|...+.+++|||||+
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------------------~~-~l~~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------------------TK-DLTPESGMHRTQLSPDGS 413 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------------------CE-ESCCSSSEEEEEECTTSS
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------------------ce-eccCCCceEEEEECCCCC
Confidence 5444 45666 6666544 3443 3455554322110 11 123556788999999999
Q ss_pred EEEEEeCC----ceE-EEEccCCc
Q 002405 466 FLAVAGLH----GLI-LYDIRQKK 484 (927)
Q Consensus 466 ~la~ag~d----g~i-~wd~~s~~ 484 (927)
+++.++.+ +.+ +||+.+++
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 99877554 446 99987765
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=2.9e-15 Score=160.27 Aligned_cols=241 Identities=10% Similarity=0.052 Sum_probs=159.0
Q ss_pred ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe-cCceeecCCCCCCCccce
Q 002405 38 SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEKSIQIGGKQPSGLFFI 116 (927)
Q Consensus 38 ~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~-~~~~~~~~~~~~~~~~~~ 116 (927)
.+++|++|+.. .+... ... .+.+.+.+++|+|||++|++++ ++.|.+|++.. +........+..
T Consensus 20 ~~~~i~~~d~~-~~~~~-~~~------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~------ 84 (297)
T 2ojh_A 20 MRSSIEIFNIR-TRKMR-VVW------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT------ 84 (297)
T ss_dssp CCEEEEEEETT-TTEEE-EEE------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC------
T ss_pred cceeEEEEeCC-CCcee-eec------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc------
Confidence 36789999986 43322 121 1346678999999999999986 78999999875 332211111100
Q ss_pred eeeEEeecccccccccceEEEeeccCCeEEEEe--cCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCcccc
Q 002405 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (927)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~--~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 194 (927)
....-.++++++..++++. .++...++.++........
T Consensus 85 --------------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------- 124 (297)
T 2ojh_A 85 --------------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------------------------- 124 (297)
T ss_dssp --------------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE--------------------------
T ss_pred --------------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE--------------------------
Confidence 0001135677888888888 3455666666533221110
Q ss_pred CCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEE-EeeecCccceeeec--ccc--eecCCCCeE-EEEEcCCC
Q 002405 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFI--KID--KELGSGDAV-CASIAPEQ 268 (927)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~-~~~~d~~~~~w~~~--~~~--~~~~h~~~v-~v~~sp~~ 268 (927)
+.. ...+.. +.++|||+.++ ++..++.+++|+.. ..+ ....|...+ +++|+|++
T Consensus 125 ---------~~~-~~~~~~----------~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 125 ---------MTK-NLPSYW----------HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp ---------CCS-SSSEEE----------EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred ---------eec-CCCccc----------eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 001 112333 34578888766 56677888888753 222 224566677 99999999
Q ss_pred cEEEEEe-cCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-----------CcEEEEEc
Q 002405 269 QILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----------RGLTVWSV 336 (927)
Q Consensus 269 ~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D-----------g~v~vW~~ 336 (927)
+.|++++ .|+.+++|+++..+.....+.. |...+.+++|+|||++|++++.+ +.+.+||+
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITD--------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCC--------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEec--------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 9888766 5999999999743555555555 77889999999999999988876 46999999
Q ss_pred cCCee--EEEeccccccceecceecCCC
Q 002405 337 SGCRL--MSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 337 ~~~~~--~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+++. +..+.+| ...+..+.|+|++
T Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~spdg 283 (297)
T 2ojh_A 257 DGGNVETLFDLFGG-QGTMNSPNWSPDG 283 (297)
T ss_dssp TSCSCEEEEEEEES-TTTSCSCCBCTTS
T ss_pred CCCCceeeeccCCC-CcccccceECCCC
Confidence 88754 3334344 5668888888887
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.67 E-value=4.9e-15 Score=181.59 Aligned_cols=263 Identities=11% Similarity=0.070 Sum_probs=174.8
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccc---ce--ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI---DK--ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~---~~--~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
++++|||+.+++++. +++.+|+...+ +. +..|...+ +++|||||++||+++ +++|.+||+.+ +........
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 567899999888776 88999998765 32 35676777 999999999999987 56999999986 543322222
Q ss_pred ecCCCCCCCCC----------------CeeEEEECCCCCEEEEEEcCC--------------------------------
Q 002405 298 YDWGYSMDDTG----------------PVSCIAWTPDNSAFAVGWKSR-------------------------------- 329 (927)
Q Consensus 298 ~~~~~~~~h~~----------------~V~~l~~spdg~~Lasg~~Dg-------------------------------- 329 (927)
+.. .+.+++|||||+.||+++.|+
T Consensus 191 --------~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 191 --------GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp --------CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred --------CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 222 247899999999999998776
Q ss_pred -cEEEEEccC-CeeEEEecc-ccccceecceecCCCCCCccccccc--------ceeEEEcCCCceEEEEEcCCcc----
Q 002405 330 -GLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEYGYRLYAIEEGSSE---- 394 (927)
Q Consensus 330 -~v~vW~~~~-~~~~~~l~~-~~~~~v~s~~~sp~~~~~~~~l~sg--------~~~~~W~~~~~~l~~~~~~~~~---- 394 (927)
.|.+||+.+ ++....... .+...+.+++| |++ +.++.+ ..+.+|+..++++......+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 788999988 765443322 22567889999 998 655522 2688999988877666554332
Q ss_pred e--EEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEE-EEccCCCEEEEE
Q 002405 395 R--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV-AASKDGMFLAVA 470 (927)
Q Consensus 395 ~--v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v-a~spdG~~la~a 470 (927)
. -..+++ ++.+++++.|+..++|.+..... +..+..|.+.|.++ +|||||+.|+..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------------~~~l~~~~~~v~~~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------------AAALTHGNWSVDELLAVDEKAGLAYFR 397 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--------------------EEESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC--------------------eeeeeecceEEEeEeEEeCCCCEEEEE
Confidence 1 255666 77778888888888887652211 12344567788887 599999988654
Q ss_pred e-CCc--eE-EEEccC-Cc-EEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeC
Q 002405 471 G-LHG--LI-LYDIRQ-KK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 471 g-~dg--~i-~wd~~s-~~-w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
+ .++ .+ +|++.. ++ -+.+.. .. .+..+.|. ++.+++.+.. ...-.++.+++.
T Consensus 398 ~~~~~~~~~~l~~~~~~g~~~~~l~~---~~--~~~~~~~spdg~~l~~~~~~-~~~p~~~~l~~~ 457 (741)
T 2ecf_A 398 AGIESARESQIYAVPLQGGQPQRLSK---AP--GMHSASFARNASVYVDSWSN-NSTPPQIELFRA 457 (741)
T ss_dssp ECSSCTTCBEEEEEETTCCCCEECCC---SC--SEEEEEECTTSSEEEEEEEE-TTEEEEEEEEET
T ss_pred EeCCCCceEEEEEEEcCCCCeeeccc---CC--CceEEEECCCCCEEEEEecC-CCCCCeEEEEEc
Confidence 4 444 66 998753 22 222222 11 13345564 5566554332 222345556654
No 138
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.67 E-value=3.9e-15 Score=177.10 Aligned_cols=245 Identities=15% Similarity=0.108 Sum_probs=162.8
Q ss_pred CceEEEEEecCeEEEEEc--cCeEEEeecCCceeEEEEEeeChHhhhhc-ccccEEEEcCCccEEEEEec---CcEEEEE
Q 002405 21 SQQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---SLYLHIF 94 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~--~~~v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wspDg~~Lav~t~---dg~l~i~ 94 (927)
+...++|||||+.||.++ ++++.||+++ .+.. ..+. .++ +.+..++|||| +.++++.. +...++|
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-~~lt------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-VKLN------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-EECC------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-Eeee------cccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 456689999999999874 7899999984 3322 1111 122 45678999999 77777765 4567888
Q ss_pred EEEe--cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEE-EecCCcEEEEecCCccccceeecc
Q 002405 95 KVQI--TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL-GLSDGSLYSISWKGEFYGAFELVH 171 (927)
Q Consensus 95 ~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v-~~~dg~i~~~~w~~~~~~~~~~~~ 171 (927)
.+.. ........ ......+.+++++++.++. +..++.+.+|+.++. ....
T Consensus 94 ~~~~~~~g~~~~l~----------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g--~~~~--- 146 (582)
T 3o4h_A 94 KVNTSRPGEEQRLE----------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG--GLRE--- 146 (582)
T ss_dssp EEETTSTTCCEECT----------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT--EEEE---
T ss_pred EEeccCCCcccccc----------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC--cEEE---
Confidence 8875 22111100 0111124577888876444 444555555433221 1110
Q ss_pred cCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec----Cccceeee
Q 002405 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEF 247 (927)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d----~~~~~w~~ 247 (927)
+.-.+. ..++++|||+.+++++.+ .++.+||.
T Consensus 147 ------------------------------------------l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 147 ------------------------------------------LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp ------------------------------------------EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred ------------------------------------------eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 000111 345679999999988776 66888886
Q ss_pred cccc--eecCCCCeE-EEEEcCCCcEEEEEecCC--eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEE--------
Q 002405 248 IKID--KELGSGDAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA-------- 314 (927)
Q Consensus 248 ~~~~--~~~~h~~~v-~v~~sp~~~~la~g~~Dg--~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~-------- 314 (927)
.+++ .+.+|...+ .++|||||+.||++..+| +|++||+++ ++.. .+.. |.+.+..++
T Consensus 183 ~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~--------~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLEL--------PSKDFSSYRPTAITWLG 252 (582)
T ss_dssp TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCC--------SCSHHHHHCCSEEEEEE
T ss_pred CCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccC--------CCcChhhhhhcccccee
Confidence 5543 346788888 999999999999888899 899999986 5544 4444 777777777
Q ss_pred ECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 315 ~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
|||||+.+++++.|+++++|++ +++..++ ...+.+++|+ ++
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg 293 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RG 293 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TT
T ss_pred EcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CC
Confidence 9999999999999999999999 4444322 3456677777 55
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.65 E-value=9.1e-14 Score=152.43 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=160.4
Q ss_pred eEEEEE-ccCeEEEeecCCce--eEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC-cEEEEEEEEecCceeecCC
Q 002405 32 GLLLIA-SPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-LYLHIFKVQITEKSIQIGG 107 (927)
Q Consensus 32 ~lla~~-~~~~v~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d-g~l~i~~l~~~~~~~~~~~ 107 (927)
.++++. .+++|++|+.+..+ ..+.. +...+....++|+|||++|++++.+ +.+.+|++.........
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-- 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-------VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-- 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-------EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-------EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--
Confidence 345553 58899999985222 11211 1123456789999999999998887 89999999622111000
Q ss_pred CCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCccccceeecccCCCCcccccccccC
Q 002405 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP 186 (927)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~ 186 (927)
+. ... ... ...-.+++++++.++++.. ++.+.+|+.+........ .
T Consensus 77 -------~~----~~~----~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-----------~------ 123 (343)
T 1ri6_A 77 -------AA----ESA----LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV-----------D------ 123 (343)
T ss_dssp -------EE----EEE----CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE-----------E------
T ss_pred -------cc----ccc----cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc-----------c------
Confidence 00 000 011 1122356778888877765 778888765311100000 0
Q ss_pred CCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEee-ecCccceeeecc-cce-------e-cCC
Q 002405 187 SNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIK-IDK-------E-LGS 256 (927)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~w~~~~-~~~-------~-~~h 256 (927)
.......+.+ ++++|||+.++++. .++.+.+|+... ++. . ...
T Consensus 124 -----------------~~~~~~~~~~----------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 176 (343)
T 1ri6_A 124 -----------------VVEGLDGCHS----------ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 176 (343)
T ss_dssp -----------------EECCCTTBCC----------CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred -----------------cccCCCCceE----------EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC
Confidence 0000111222 34578888666665 778888888765 321 1 122
Q ss_pred CCeE-EEEEcCCCcEEEEE-ecCCeEEEEeccCC-Ccc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCc
Q 002405 257 GDAV-CASIAPEQQILAVG-TRRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRG 330 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g-~~Dg~V~vwd~~~~-~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~ 330 (927)
.... +++|+|++++++++ ..++.|++|+++.. +.. ...... .+........+.+++|+|||++|+++. .|+.
T Consensus 177 ~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 177 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM--MPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC--SCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc--cCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 3344 89999999976554 48899999999641 222 122221 111111234577899999999887554 7899
Q ss_pred EEEEEcc--CC--eeEEEeccccccceecceecCCCCCCcccccccc----eeEEE--cCCCce
Q 002405 331 LTVWSVS--GC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYR 384 (927)
Q Consensus 331 v~vW~~~--~~--~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W--~~~~~~ 384 (927)
+.+|++. ++ +.+..+..+ ..+..++|+|++ ..+..+. .+.+| +..+++
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSG----KYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTS----SEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCceEEeeeecCC--CccceEEECCCC----CEEEEecCCCCeEEEEEEcCCCce
Confidence 9999997 33 344445443 237788899987 5333222 66777 333443
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.65 E-value=1e-14 Score=173.41 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=121.8
Q ss_pred EEEeCCc-EEEEeeecCccceeeeccccee--cCCCCeEEEEEcCCCcEEEEEecC----CeEEEEeccCCCcceEEEee
Q 002405 225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRR----GVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 225 ~~s~dG~-~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v~v~~sp~~~~la~g~~D----g~V~vwd~~~~~~~~~~l~~ 297 (927)
+++|||+ .+++...++...+|+..+++.. ..+.. .+++|||||++||+++.| ++|++||+++ ++ ...+..
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~ 192 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDS 192 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEECC
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeec
Confidence 4578885 3333344444558987765432 22222 578999999999998887 7899999876 44 345655
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC--cEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccccee
Q 002405 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (927)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~ 375 (927)
|.+.+.+++|||||+.||++..++ .|.+||+.+++.. .+.++ ...+.+++ ..+...
T Consensus 193 --------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~------------~~~~~~ 250 (582)
T 3o4h_A 193 --------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYR------------PTAITW 250 (582)
T ss_dssp --------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHC------------CSEEEE
T ss_pred --------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhh------------hccccc
Confidence 888999999999999999888888 8999999988766 55544 33333332 000011
Q ss_pred EEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCce
Q 002405 376 MQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (927)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (927)
..|++++ + .+++++.++++++|++ ++. .. ...+.|
T Consensus 251 ~~~spdg-~-------------------~~~~~~~~g~~~l~~~--g~~--------------------~~---~~~~~v 285 (582)
T 3o4h_A 251 LGYLPDG-R-------------------LAVVARREGRSAVFID--GER--------------------VE---APQGNH 285 (582)
T ss_dssp EEECTTS-C-------------------EEEEEEETTEEEEEET--TEE--------------------EC---CCSSEE
T ss_pred eeEcCCC-c-------------------EEEEEEcCCcEEEEEE--CCe--------------------ec---cCCCce
Confidence 2244333 2 2344556677777876 221 01 122468
Q ss_pred EEEEEccCCCEEEEEeCCceE--EEEc
Q 002405 456 QHVAASKDGMFLAVAGLHGLI--LYDI 480 (927)
Q Consensus 456 ~~va~spdG~~la~ag~dg~i--~wd~ 480 (927)
.+++|| ||+++++++.+... +|..
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence 899999 99999999888764 5544
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.64 E-value=2.3e-14 Score=174.67 Aligned_cols=312 Identities=10% Similarity=0.008 Sum_probs=172.8
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe---
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI--- 98 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~--- 98 (927)
..-++|||| +.++.+.++++++|+.. .+.. ..... ..+.+.+++|||||+.||.+ .++.|.+|++..
T Consensus 84 v~~~~~spd-~~~~~~~~~~i~~~d~~-~~~~-~~l~~------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLFTQGGLVGFDML-ARKV-TYLFD------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp CEEEEETTT-TEEEEEETTEEEEEETT-TTEE-EEEEC------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred ceeEEECCC-CeEEEEECCEEEEEECC-CCce-EEccC------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 555889999 55555677999999996 4332 22221 13456789999999999985 689999999976
Q ss_pred --cCceeecCCCCCCCccceeeeEEeeccccccccc--ceEEEeeccCCeEEEEecCC-c---EEEEecCCccccceeec
Q 002405 99 --TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKG--LSVSNIVSDNKHMLLGLSDG-S---LYSISWKGEFYGAFELV 170 (927)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~l~v~~~dg-~---i~~~~w~~~~~~~~~~~ 170 (927)
+............ ..+... ...... ..-.++++|++.|+.+..|. . .................
T Consensus 154 ~~g~~~~~~~~~~~~--~~~g~~-------~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 224 (706)
T 2z3z_A 154 GMSRAIAVTIDGTET--LVYGQA-------VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY 224 (706)
T ss_dssp CCCCCEESCSCCBTT--EEESSC-------CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred cCCCcEEeccCCCCC--eEcccc-------hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence 4332211111000 000000 000000 11236788888888876332 1 11111110000000000
Q ss_pred ccCCCCcccccccccCCCCCcccc-CCCceecccc-cCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecC-----ccc
Q 002405 171 HSSNDSSVAALSHHFPSNGLASVD-TSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-----GLK 243 (927)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~-----~~~ 243 (927)
.|..... ..+.++.... ..+....... ..+...+.++ .++|||+.+++++.+. .+.
T Consensus 225 -y~~~g~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----------~~spdg~~l~~~~~~~~~~~~~v~ 287 (706)
T 2z3z_A 225 -YPMAGTP------SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNL----------SWSPDENILYVAEVNRAQNECKVN 287 (706)
T ss_dssp -CCBTTSC------CCEEEEEEEETTTTEEEECCCCSCTTCEEEEE----------EECTTSSEEEEEEECTTSCEEEEE
T ss_pred -CCCCCCC------CCeeEEEEEECCCCceEeeccCCCCceeEeeE----------EEECCCCEEEEEEeCCCCCeeEEE
Confidence 0000000 0000000000 0000000110 1223344444 4578888777766554 677
Q ss_pred eeeeccc-cee--c--CCC---CeE-EEEEcC--CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeE
Q 002405 244 LAEFIKI-DKE--L--GSG---DAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (927)
Q Consensus 244 ~w~~~~~-~~~--~--~h~---~~v-~v~~sp--~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~ 312 (927)
+||..++ ... . .+. ..+ +++|+| +|++++++..||.++||.++..++.+..+.. |...|.+
T Consensus 288 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--------~~~~v~~ 359 (706)
T 2z3z_A 288 AYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--------GEWEVTN 359 (706)
T ss_dssp EEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--------SSSCEEE
T ss_pred EEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--------CCeEEEe
Confidence 8887665 211 1 111 223 689999 9999999999999999998743555666655 7777877
Q ss_pred -EEECCCCCEEEEEEcC-C----cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc-------eeEEEc
Q 002405 313 -IAWTPDNSAFAVGWKS-R----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWD 379 (927)
Q Consensus 313 -l~~spdg~~Lasg~~D-g----~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~ 379 (927)
++|+|||+.|+.++.+ + .|..|++.++. ...+. + ...+.+++|+|++ ..++... .+.+|+
T Consensus 360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg----~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-P-ESGMHRTQLSPDG----SAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-C-SSSEEEEEECTTS----SEEEEEEECSSCSCEEEEEE
T ss_pred eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-C-CCceEEEEECCCC----CEEEEEecCCCCCcEEEEEE
Confidence 8999999988766554 3 55666666654 33333 3 4568889999998 5554321 478899
Q ss_pred CCCce
Q 002405 380 EYGYR 384 (927)
Q Consensus 380 ~~~~~ 384 (927)
..+++
T Consensus 433 ~~~~~ 437 (706)
T 2z3z_A 433 IGKGS 437 (706)
T ss_dssp SSSCE
T ss_pred CCCCe
Confidence 88776
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.64 E-value=3.9e-14 Score=156.41 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=149.6
Q ss_pred EEEEeCCcEEEEeee--cCccceeeecccce--e---cCCCCeE-EEEEcCCCcEEEEEe-cCCeEEEEeccCCCcce--
Q 002405 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDK--E---LGSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLI-- 292 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~--d~~~~~w~~~~~~~--~---~~h~~~v-~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~-- 292 (927)
++++|||++++++.. ++.+.+|+...++. . ..+.... .++|+|+|++|++++ .+++|++|+++..+...
T Consensus 45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 566899994444443 57888898754431 1 2345555 999999999888887 78999999996423322
Q ss_pred EEEeeecCCC-CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc-CCeeEE--EeccccccceecceecCCCCCCccc
Q 002405 293 RTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMS--TIRQISLSSISSPIVKPNQDCKYEP 368 (927)
Q Consensus 293 ~~l~~~~~~~-~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~-~~~~~~--~l~~~~~~~v~s~~~sp~~~~~~~~ 368 (927)
..+.....++ ...+...+.+++|+|||+.++++..++.|.+|++. ++.+.. .+..........++|+|++ ..
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg----~~ 200 (347)
T 3hfq_A 125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG----QY 200 (347)
T ss_dssp EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS----SE
T ss_pred ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC----CE
Confidence 2221100000 00123358899999999966666678899999997 454322 2222212356678999998 53
Q ss_pred c-ccc---ceeEEEcCC--CceEE--EEEcCCc------ceE--EEEec-ccee-eecccCCCeeeeeeeecCCeEEEee
Q 002405 369 L-MSG---TSMMQWDEY--GYRLY--AIEEGSS------ERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQ 430 (927)
Q Consensus 369 l-~sg---~~~~~W~~~--~~~l~--~~~~~~~------~~v--~~~~~-~~~~-~s~s~d~~~~~w~~~~~~~~~~~~~ 430 (927)
+ +++ ..+.+|+.+ ++++. ....... ..+ +++++ ++.+ ++...++.+.+|++.......
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~---- 276 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT---- 276 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence 3 322 277788765 35432 2222211 223 56666 7766 555668889999875322100
Q ss_pred cCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCC-ceE-EE--EccCCcEE
Q 002405 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LY--DIRQKKWR 486 (927)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d-g~i-~w--d~~s~~w~ 486 (927)
....+..+...++.++|||||++|++++.+ +.+ +| |..+++..
T Consensus 277 -------------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 -------------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp -------------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred -------------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 011222334457889999999999999875 778 99 55566644
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.64 E-value=1.7e-14 Score=158.24 Aligned_cols=233 Identities=15% Similarity=0.158 Sum_probs=149.3
Q ss_pred EEEEeCCcEEEEeeec-Cccceeeec--ccce--e---cCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEeccCCCc---c
Q 002405 224 FVLYSNGQLMSCSVSK-KGLKLAEFI--KIDK--E---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESAS---L 291 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d-~~~~~w~~~--~~~~--~---~~h~~~v~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~---~ 291 (927)
++++|||+.++++..+ +.+.+|+.. +++. . ..+..+.+++|+|++++|++++ .++.|.+||+.+ +. .
T Consensus 43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~ 121 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGV 121 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEE
T ss_pred EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Cccccc
Confidence 4568899877777665 788888875 3221 1 2233333999999999876665 489999999953 32 2
Q ss_pred eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEccC-CeeEE----EeccccccceecceecCCCCCC
Q 002405 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSG-CRLMS----TIRQISLSSISSPIVKPNQDCK 365 (927)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~~~-~~~~~----~l~~~~~~~v~s~~~sp~~~~~ 365 (927)
...+. ....+.+++|+|||+.|++++ .|+.|.+|++.+ ++... .+..+....+..++|+|++
T Consensus 122 ~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg--- 189 (343)
T 1ri6_A 122 VDVVE---------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE--- 189 (343)
T ss_dssp EEEEC---------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS---
T ss_pred ccccc---------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC---
Confidence 22222 234588999999999888887 889999999976 54432 2232223467788999998
Q ss_pred cccc-ccc---ceeEEEcCCC--ceE--EEEEc----CCc--ceE--EEEec-cceee-ecccCCCeeeeeeeecCCeEE
Q 002405 366 YEPL-MSG---TSMMQWDEYG--YRL--YAIEE----GSS--ERV--LIFSF-GKCCL-NRGVSGMTYARQVIYGEDRLL 427 (927)
Q Consensus 366 ~~~l-~sg---~~~~~W~~~~--~~l--~~~~~----~~~--~~v--~~~~~-~~~~~-s~s~d~~~~~w~~~~~~~~~~ 427 (927)
..+ +++ ..+.+|+.+. +++ ..... ++. ..+ +++++ ++.++ +...++.+.+|++........
T Consensus 190 -~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 190 -QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp -SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred -CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 533 332 2788999843 332 22221 111 122 55666 66655 566788999999763111100
Q ss_pred EeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe-CCceE-EEEc--cCCcEEe
Q 002405 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDI--RQKKWRV 487 (927)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag-~dg~i-~wd~--~s~~w~~ 487 (927)
.......+. .+..++|+|||++|++++ .++.+ +|++ .+++++.
T Consensus 269 ----------------~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 269 ----------------KEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp ----------------EEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred ----------------EeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 011111222 377899999999999998 57888 9954 4666654
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.63 E-value=1.3e-15 Score=186.17 Aligned_cols=298 Identities=9% Similarity=0.029 Sum_probs=180.0
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCC---CeeEEEECCCCCEEEEEEcC--------
Q 002405 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG---PVSCIAWTPDNSAFAVGWKS-------- 328 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~---~V~~l~~spdg~~Lasg~~D-------- 328 (927)
.+++|+|||+++++ +.||+|++||+.+ ++....+.. |.. .|.+++|||||++||+++.+
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~-g~~~~~~~~--------~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVET-NTSTVLIEG--------KKIESLRAIRYEISPDREYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGG-CCCEEEECT--------TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCC-CcEEEEecc--------ccccccccceEEECCCCCEEEEEecCccceeecc
Confidence 38899999998877 7899999999987 666665554 544 49999999999999999875
Q ss_pred -CcEEEEEccCCeeEEEeccc--cccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEEcCCcc---------
Q 002405 329 -RGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSE--------- 394 (927)
Q Consensus 329 -g~v~vW~~~~~~~~~~l~~~--~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~--------- 394 (927)
+.+.+||+.+++. ..+... +...+.+++|||++ +.++.++ ++.+|+..+++.......+..
T Consensus 90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG----QQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST----TCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred eeeEEEEECCCCce-EeccCCccccccccccEECCCC----CEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 6788999988865 333322 13448899999999 7766554 899999988877666554332
Q ss_pred -----------eEEEEec-cceeeecccCC-CeeeeeeeecCC------eEEEee--cCCC---CcceEEE--------e
Q 002405 395 -----------RVLIFSF-GKCCLNRGVSG-MTYARQVIYGED------RLLVVQ--SEDT---DELKILH--------L 442 (927)
Q Consensus 395 -----------~v~~~~~-~~~~~s~s~d~-~~~~w~~~~~~~------~~~~~~--~~~~---~~~~w~~--------~ 442 (927)
.-..+++ |+.+++++.|. .+..|.+..... .-+.+. +... ....|.. +
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 2266677 88888777553 444554421110 000000 0000 0011211 1
Q ss_pred ecCcccccCCCceEEEEEccCCCEEEEEeCC----ceE-EEEccCCcEEeeCCccceeeeE--EEEEEee--CCEEEEEE
Q 002405 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWL--GKIIVVCN 513 (927)
Q Consensus 443 ~~~~~~~~~~~~I~~va~spdG~~la~ag~d----g~i-~wd~~s~~w~~f~~~~~e~~~~--v~~~~W~--~~~li~~~ 513 (927)
..+.....+...+.+++|||||+++++++.+ +.+ +||+.+++........++.... ...+.|. ++.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 1111222346779999999999999877543 466 9999988754332111111011 1256775 44455431
Q ss_pred eecCCC----eEEEEEee-CCCCC---ccceeEEEecCC-ccEEEEccCCEEEEEEcC---CeEEEEEEEEec
Q 002405 514 YIDSSN----TYELLFYP-RYHLD---QSSLLCRKSLLA-KPIVMDVYEDYILVTYRP---FDVHIFHVKLFG 574 (927)
Q Consensus 514 ~~~~~~----~~~l~l~~-~~~l~---~~~~~~~~~~~~-~~~~~~~~~~~l~v~~~d---~~i~l~~~~~~~ 574 (927)
.. .++ ...|.+|+ ...-. ...+. ...... ..+.+++.++.|+....+ +.+.||++...+
T Consensus 325 ~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 325 AI-PQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EE-CCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred ec-ccCCCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 22 222 44677776 22111 11111 100111 124689999998776655 789999887543
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.1e-15 Score=182.77 Aligned_cols=326 Identities=9% Similarity=0.036 Sum_probs=186.1
Q ss_pred cEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec
Q 002405 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (927)
Q Consensus 71 ~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~ 150 (927)
.+++|+|||++++ .+.+|.|++|++..+........+. . ......-.++++|++.|+.++.
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~----------------~--~~~~~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRT----------------M--KSVNASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHH----------------H--HTTTCSEEEECTTSSEEEEEEE
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEcccc----------------c--cccceeeEEECCCCCeEEEEec
Confidence 4789999996555 4569999999987554322111000 0 0000122367889999888876
Q ss_pred ---------CCcEEEEecCCccccc-eeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCc
Q 002405 151 ---------DGSLYSISWKGEFYGA-FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (927)
Q Consensus 151 ---------dg~i~~~~w~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 220 (927)
++.+.+|+.++..... .. . ...+.+
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~---------------------------------l-----~~~~~~------- 114 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEFVRGNE---------------------------------L-----PRPIQY------- 114 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEECCSSC---------------------------------C-----CSSBCC-------
T ss_pred CceeEEeecceEEEEEECCCCcccccee---------------------------------c-----Cccccc-------
Confidence 5677665443221100 00 0 011222
Q ss_pred ceEEEEEeCCcEEEEeeecCccceeeeccccee----cCCCCe------------------EEEEEcCCCcEEEEEecCC
Q 002405 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDA------------------VCASIAPEQQILAVGTRRG 278 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~------------------v~v~~sp~~~~la~g~~Dg 278 (927)
+++||||+.++++. ++++++|+..+++.. .++... .+++|||||+.||+++.|.
T Consensus 115 ---~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 115 ---LCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp ---EEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred ---ceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 45688998888765 678888987654322 222221 2799999999999998763
Q ss_pred ----------------------------------eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEE
Q 002405 279 ----------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (927)
Q Consensus 279 ----------------------------------~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (927)
+|++||+.+ +.....+.........+|.+.+.+++|||||+.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence 788999876 443200111000000127888999999999987777
Q ss_pred EEcCC----cEEEEE----ccCCeeEEEe----cccccccee-----cceecCCCCCCcccccc--c----c-eeEEEcC
Q 002405 325 GWKSR----GLTVWS----VSGCRLMSTI----RQISLSSIS-----SPIVKPNQDCKYEPLMS--G----T-SMMQWDE 380 (927)
Q Consensus 325 g~~Dg----~v~vW~----~~~~~~~~~l----~~~~~~~v~-----s~~~sp~~~~~~~~l~s--g----~-~~~~W~~ 380 (927)
....+ .|.+|| +.++++...+ .++ ...+. .++|+|++ ..++. + . .+..|+.
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEESS
T ss_pred EeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCC----CeEEEEEEccCCceEEEEEEC
Confidence 54332 388899 7777655444 233 45566 88999998 43321 1 1 6777887
Q ss_pred CCceEEEEEcCCcceEEEEe--ccceeeeccc-----CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC
Q 002405 381 YGYRLYAIEEGSSERVLIFS--FGKCCLNRGV-----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (927)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~--~~~~~~s~s~-----d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (927)
.+++. ..+..+...+..+. -++.++..+. ++..++|.+....... +...+...+.+|..
T Consensus 345 ~~~~~-~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~~~l~~~~~~~~~ 410 (719)
T 1z68_A 345 TVENA-IQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-------------SKKCVTCHLRKERC 410 (719)
T ss_dssp CSTTC-EECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSC-------------CEEESSTTTTTTTB
T ss_pred CCCce-EecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCC-------------CceeccCccCCCCC
Confidence 77653 23333333332111 3444443333 3667777765411100 00001111223566
Q ss_pred ceEEEEEccCCCEEEEEe-CC--ceE-EEEccCCc
Q 002405 454 PVQHVAASKDGMFLAVAG-LH--GLI-LYDIRQKK 484 (927)
Q Consensus 454 ~I~~va~spdG~~la~ag-~d--g~i-~wd~~s~~ 484 (927)
.+..++|||||++++..+ .. ..+ +||+.+++
T Consensus 411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 688899999999888543 33 234 78876665
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.61 E-value=1.8e-15 Score=172.56 Aligned_cols=217 Identities=12% Similarity=0.123 Sum_probs=134.2
Q ss_pred eE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc------ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEE----EEEc
Q 002405 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESAS------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA----VGWK 327 (927)
Q Consensus 259 ~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~------~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La----sg~~ 327 (927)
.+ ++++++++.++|+|+.|| +++|+...... ...............|.+.|++++|+|||++|| +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 34 899999999999999988 89988642000 000000000000112677899999999999999 7888
Q ss_pred CCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEec----cc
Q 002405 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF----GK 403 (927)
Q Consensus 328 Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~ 403 (927)
|++|+|||+.++.. +. .. +. ..+ ..+....+|...|..+.| ++
T Consensus 117 d~~v~iwd~~~~~~-----~~-~~--------~~-----~~~--------------~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 117 GSIIAFFDVRTFSN-----EA-KQ--------QK-----RPF--------------AYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp EEEEEEEEHHHHHC-----TT-CS--------SC-----CCS--------------EEEECCCSGGGSEEEEEECSSCTT
T ss_pred CceEEEEEcccccc-----CC-cC--------Cc-----cee--------------eeeeccCCCCCceEEEEECCCCCC
Confidence 99999999965410 00 00 00 000 001112234444433332 34
Q ss_pred eeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 404 ~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
.+++++.|+++++||+..+.. .....+|...|++++|||+|++||+|+.||.+ +||...
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~--------------------~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~ 223 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVK--------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL 223 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEE--------------------EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC
T ss_pred EEEEEECCCeEEEEEcCCCcc--------------------eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC
Confidence 678889999999999875422 22334577889999999999999999999999 999983
Q ss_pred CcEEeeCCcc---ceeeeEEEEEEeeCCEEEEEEeecCC----CeEEEEEeeCC
Q 002405 483 KKWRVFGDIT---QEQKIQSKGLLWLGKIIVVCNYIDSS----NTYELLFYPRY 529 (927)
Q Consensus 483 ~~w~~f~~~~---~e~~~~v~~~~W~~~~li~~~~~~~~----~~~~l~l~~~~ 529 (927)
..-+.+.... .++...+..+.|.++...++.+...+ ....+++|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 3333332211 12234688999986644443333222 22458888764
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.61 E-value=5.3e-13 Score=147.27 Aligned_cols=284 Identities=10% Similarity=0.020 Sum_probs=158.3
Q ss_pred cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec---CcEEEEEEEEecCceeecCCCCCCCccc
Q 002405 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (927)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~---dg~l~i~~l~~~~~~~~~~~~~~~~~~~ 115 (927)
++.+.+|..+.....+..... ....+....++|+|||+ |++++. ++.|.+|++..+.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~----~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~----------- 78 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL----LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL----------- 78 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE----EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------
T ss_pred CCCEEEEEEcCCCCeEEEeee----eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------
Confidence 457888877522222222111 11234456899999999 666654 58999999963321110
Q ss_pred eeeeEEeecccccccccceEEEeeccCCeEEEEe-cCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCcccc
Q 002405 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (927)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~-~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 194 (927)
... .. ......-.+++++++.++++. .++.+.+|+.+....... + ...... +.
T Consensus 79 ~~~--~~------~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~-~----------~~~~~~-~~------ 132 (347)
T 3hfq_A 79 NTV--VA------PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL-T----------DTVQHS-GH------ 132 (347)
T ss_dssp EEE--EE------ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE-E----------EEEECC-CC------
T ss_pred eee--ec------CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee-c----------ceeecC-CC------
Confidence 000 00 011112236778888888887 578898877653211110 0 000000 00
Q ss_pred CCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeec-cccee------cCCC-CeEEEEEcC
Q 002405 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE------LGSG-DAVCASIAP 266 (927)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~-~~~~~------~~h~-~~v~v~~sp 266 (927)
+. . .......+.+ ++++|||+++++...++.+.+|+.. .++.. .... .+..++|+|
T Consensus 133 --~p---~-~~~~~~~~~~----------~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 133 --GP---R-PEQDGSHIHY----------TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp --CS---S-TTCSSCCEEE----------EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred --CC---C-ccccCCCceE----------EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 00 0 0011223433 4568888866666667788888876 22211 1122 334899999
Q ss_pred CCcEEEE-EecCCeEEEEeccCC-Ccc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEE-EEEcCCcEEEEEcc-CC-
Q 002405 267 EQQILAV-GTRRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSRGLTVWSVS-GC- 339 (927)
Q Consensus 267 ~~~~la~-g~~Dg~V~vwd~~~~-~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La-sg~~Dg~v~vW~~~-~~- 339 (927)
+|+++++ +..++.|++|+++.. +.. ...+.. .+........+..++|+|||++|+ ++..++.|.+|++. ++
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 9996555 567899999999742 222 112221 111011124588999999999874 55568999999986 22
Q ss_pred -eeEEEeccccccceecceecCCCCCCcccccccc----eeEEE--cCCCceEEE
Q 002405 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLYA 387 (927)
Q Consensus 340 -~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W--~~~~~~l~~ 387 (927)
..+..+..+ ...+..++|+|++ ..++.+. .+.+| +.+++++..
T Consensus 275 ~~~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTE-GDFPRDFDLDPTE----AFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECS-SSCCCEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecC-CCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 344455443 3457788899998 5443322 66777 555565543
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.61 E-value=6.5e-14 Score=153.21 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=149.8
Q ss_pred EEEEeCCcEE-EEeeecCccceeeeccccee----cCC----CCeE-EEEEcCCCcEEEEEe------------cCCeEE
Q 002405 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE----LGS----GDAV-CASIAPEQQILAVGT------------RRGVVE 281 (927)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~~~~w~~~~~~~~----~~h----~~~v-~v~~sp~~~~la~g~------------~Dg~V~ 281 (927)
++++|||+.+ +++..++.+.+||..+++.. .++ ...+ +++|+|+++.+++++ .++.|.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence 4568888654 44555678888987665432 122 1134 899999999999886 579999
Q ss_pred EEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCC
Q 002405 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (927)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~ 361 (927)
+||+.+ ++....+.. ...+.+++|+|||++|+++ ++.+.+||+.+++....+..+. ......++|+
T Consensus 119 v~d~~~-~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~s~d 184 (337)
T 1pby_B 119 LYDAET-LSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS--WEAETYAQPD 184 (337)
T ss_dssp EEETTT-TEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT--TTTTTBCCCB
T ss_pred EEECCC-CcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc--cCCCceeCCC
Confidence 999986 655555543 3457889999999999888 6899999999988887776542 1124477887
Q ss_pred CCCCcccccccc---------------------------eeEEEcCCCceEEE-EEcCCcceE--EEEec-cceeeeccc
Q 002405 362 QDCKYEPLMSGT---------------------------SMMQWDEYGYRLYA-IEEGSSERV--LIFSF-GKCCLNRGV 410 (927)
Q Consensus 362 ~~~~~~~l~sg~---------------------------~~~~W~~~~~~l~~-~~~~~~~~v--~~~~~-~~~~~s~s~ 410 (927)
+ ..+.... .+.+|+..++++.. ....+...+ +.+++ ++.++++
T Consensus 185 g----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-- 258 (337)
T 1pby_B 185 V----LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-- 258 (337)
T ss_dssp C----CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--
T ss_pred c----cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--
Confidence 6 3222111 35788888876642 122333344 55555 6666666
Q ss_pred CCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
++.+.+|++..++. ...+ .....+.+++|+|||++|++++.++.+ +||+.+++
T Consensus 259 ~~~v~~~d~~~~~~--------------------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 259 YNVLESFDLEKNAS--------------------IKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ESEEEEEETTTTEE--------------------EEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCeEEEEECCCCcC--------------------ccee-cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 67888888643221 1111 112346789999999999999999999 99998875
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.60 E-value=2.2e-13 Score=149.10 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=139.4
Q ss_pred EEEecCe-EEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec-CcEEEEEEEEecCc-
Q 002405 26 YFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIFKVQITEK- 101 (927)
Q Consensus 26 ~fs~dg~-lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~-dg~l~i~~l~~~~~- 101 (927)
.|++++. ++++. .+++|.+||.. .+..+....- ..... .++|+|||+.+++++. ++.|.+|++..+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD-TLEILNQITL------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT-TCCEEEEEEC------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc-ccceeeeEEc------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 3566644 45555 47899999985 4444333221 12333 9999999998777766 78999999864432
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccccceE-EEeeccCCeEEEEecCC---cEEEEecCCccccceeecccCCCCc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV-SNIVSDNKHMLLGLSDG---SLYSISWKGEFYGAFELVHSSNDSS 177 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~l~v~~~dg---~i~~~~w~~~~~~~~~~~~~~~~~~ 177 (927)
.... .. +....- .+++++++.++++..++ .|.+|+.+... ...
T Consensus 76 ~~~~---------------~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~--~~~--------- 122 (331)
T 3u4y_A 76 VVAI---------------QE-------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK--FIS--------- 122 (331)
T ss_dssp EEEE---------------EE-------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE--EEE---------
T ss_pred EEec---------------cc-------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC--eEE---------
Confidence 1110 00 000111 25677888888554443 78776544221 110
Q ss_pred ccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcE-EEEeeecCc-cceeeeccc-----
Q 002405 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL-MSCSVSKKG-LKLAEFIKI----- 250 (927)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~-~~~~~~d~~-~~~w~~~~~----- 250 (927)
. ........+ ++++|||+. +++...++. +.+|+....
T Consensus 123 ---~-----------------------~~~~~~~~~----------~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 123 ---T-----------------------IPIPYDAVG----------IAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp ---E-----------------------EECCTTEEE----------EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred ---E-----------------------EECCCCccc----------eEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 0 001111233 456888874 444455567 888875421
Q ss_pred ---ceecCCCCeEEEEEcCCCcEE-EEEecCCeEEEEeccCCCcc---eEEEeeecCCCCCCCCCCeeEEEECCCCCEEE
Q 002405 251 ---DKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASL---IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 251 ---~~~~~h~~~v~v~~sp~~~~l-a~g~~Dg~V~vwd~~~~~~~---~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (927)
........+.+++|+|+|+++ +++..+++|++||+.+ ++. +..+.. ...+..++|+|||++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVGT---------NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC---------SSCCCCEEECTTSSEEE
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-CcccceeeeccC---------CCCCceEEECCCCCEEE
Confidence 111222334499999999965 4555789999999987 666 555543 35678899999999776
Q ss_pred EEE-cCCcEEEEEccCCee
Q 002405 324 VGW-KSRGLTVWSVSGCRL 341 (927)
Q Consensus 324 sg~-~Dg~v~vW~~~~~~~ 341 (927)
++. .++.|.+||..++++
T Consensus 237 v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EECSSEEEEEEEETTTTEE
T ss_pred EEEcCCCEEEEEECCCCce
Confidence 665 467899999988876
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.60 E-value=1.2e-13 Score=151.27 Aligned_cols=227 Identities=11% Similarity=0.048 Sum_probs=151.3
Q ss_pred EEeCC-cEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEec-CCeEEEEeccCCCcc-eEEEeeec
Q 002405 226 LYSNG-QLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASL-IRTVSLYD 299 (927)
Q Consensus 226 ~s~dG-~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~-Dg~V~vwd~~~~~~~-~~~l~~~~ 299 (927)
+.+++ ..+++...++++.+||..+++.. ..+....+++|+|+++.+++++. ++.|.+||..+ +.. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~-- 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE-- 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE--
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc--
Confidence 34444 45777778889999998766543 22233339999999996665555 89999999987 655 666666
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCC---cEEEEEccCCeeEEEeccccccceecceecCCCCCCccccc-ccc--
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT-- 373 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg---~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~-sg~-- 373 (927)
+.++..+++|+|||++|+++..++ .|.+||+.+++....+..+ ....+++|+|++ +.+. ++.
T Consensus 82 ------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~~~~~~~ 149 (331)
T 3u4y_A 82 ------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNG----NGLILIDRSS 149 (331)
T ss_dssp ------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTS----SCEEEEEETT
T ss_pred ------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCC----CEEEEEecCC
Confidence 666766699999999999666553 8999999998888877653 346889999998 4333 222
Q ss_pred -e-eEEEcCCCceEE-----EEEc-CCcceEEEEec-ccee-eecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEee
Q 002405 374 -S-MMQWDEYGYRLY-----AIEE-GSSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (927)
Q Consensus 374 -~-~~~W~~~~~~l~-----~~~~-~~~~~v~~~~~-~~~~-~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (927)
. +.+|+.+....+ .... +....-..+++ ++.+ ++...++.+.+|++..+.... .
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-------------~--- 213 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-------------L--- 213 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-------------E---
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-------------e---
Confidence 5 888887643221 1111 11122256666 6644 555568889999876544200 0
Q ss_pred cCcccccCCCceEEEEEccCCCEEEEEeC-CceE-EEEccCCcE
Q 002405 444 LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKW 485 (927)
Q Consensus 444 ~~~~~~~~~~~I~~va~spdG~~la~ag~-dg~i-~wd~~s~~w 485 (927)
... ......+..++|+|||+++++++. ++.+ +||..+++.
T Consensus 214 -~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 214 -LNA-VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp -EEE-EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred -eee-ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 011 112245677999999998887765 6667 999988764
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.58 E-value=2.6e-13 Score=149.58 Aligned_cols=218 Identities=8% Similarity=0.023 Sum_probs=153.7
Q ss_pred EEEEeCCcE-EEEeeecCccceeeeccccee----cCCCC---------eEEEEEcCCCcEEEEEe--cCCeEEEEeccC
Q 002405 224 FVLYSNGQL-MSCSVSKKGLKLAEFIKIDKE----LGSGD---------AVCASIAPEQQILAVGT--RRGVVELYDLAE 287 (927)
Q Consensus 224 ~~~s~dG~~-~~~~~~d~~~~~w~~~~~~~~----~~h~~---------~v~v~~sp~~~~la~g~--~Dg~V~vwd~~~ 287 (927)
+++++||+. +++...++.+.+||..+++.. .++.. +.+++|+|+++.+++++ .++.|.+||..+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 456889984 445555788889987765442 11111 23899999999877776 488999999987
Q ss_pred CCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccc---cccceecceecCCCCC
Q 002405 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDC 364 (927)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~---~~~~v~s~~~sp~~~~ 364 (927)
++....+.. +...+.+++|+|||+.|++++.++.+.+||..+++....+... ....+..++++|++
T Consensus 174 -~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-- 242 (353)
T 3vgz_A 174 -IKLKTAIQN--------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR-- 242 (353)
T ss_dssp -TEEEEEECC--------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--
T ss_pred -CceEEEecC--------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--
Confidence 666666653 4455788999999999999999999999999999888776542 13346778999998
Q ss_pred Cccccc-cc---ceeEEEcCCCceEEEEEcCCcceEEEEec-ccee-eecccCCCeeeeeeeecCCeEEEeecCCCCcce
Q 002405 365 KYEPLM-SG---TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (927)
Q Consensus 365 ~~~~l~-sg---~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~-~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (927)
..+. +. ..+.+|+..++++......+...-..+++ ++.+ ++...++.+.+|+...+..
T Consensus 243 --~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------- 306 (353)
T 3vgz_A 243 --QRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-------------- 306 (353)
T ss_dssp --TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred --CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE--------------
Confidence 4332 22 27889999888877766543333366677 6644 4555688888888643321
Q ss_pred EEEeecCcccccCCCceEEEEEccCCCEEEEEeCCce
Q 002405 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (927)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~ 475 (927)
...+ .....+.+++|+|||++|++++.++.
T Consensus 307 ------~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 307 ------VKTF-DTPTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp ------EEEE-ECCSEEEEEEECTTSCEEEEEEECCC
T ss_pred ------EEEE-ecCCCCCeEEEcCCCCEEEEEEcccc
Confidence 1111 12235788999999999998887653
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.57 E-value=2.6e-13 Score=144.91 Aligned_cols=252 Identities=11% Similarity=0.002 Sum_probs=162.1
Q ss_pred EEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC-CeeEEEecccccc
Q 002405 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLS 351 (927)
Q Consensus 273 ~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~ 351 (927)
.++.|++|++||+.+ ++ ...+.. |.+.|.+++|||||++|++++ ++.|.+||+.+ ++.......++..
T Consensus 17 ~~~~~~~i~~~d~~~-~~-~~~~~~--------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT-RK-MRVVWQ--------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp -CCCCEEEEEEETTT-TE-EEEEEE--------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred CCCcceeEEEEeCCC-Cc-eeeecc--------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence 456789999999986 44 334555 788999999999999999987 68999999998 7776666555457
Q ss_pred ceecceecCCCCCCcccccccc-----eeEEE--cCCCceEEEEEcCCcceEEEEec-cceee-ecccCCCeeeeeeeec
Q 002405 352 SISSPIVKPNQDCKYEPLMSGT-----SMMQW--DEYGYRLYAIEEGSSERVLIFSF-GKCCL-NRGVSGMTYARQVIYG 422 (927)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~-----~~~~W--~~~~~~l~~~~~~~~~~v~~~~~-~~~~~-s~s~d~~~~~w~~~~~ 422 (927)
.+.+++|+|++ ..++.+. ...+| +..+++..............+++ ++.++ +++.++.+++|++...
T Consensus 86 ~~~~~~~spdg----~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 86 CNNDHGISPDG----ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp BCSCCEECTTS----SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccceEECCCC----CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 78999999998 5555443 34444 44555433222222212245666 67665 7778888889987543
Q ss_pred CCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe-CCceE-EEEcc--CCcEEeeCCccceeeeE
Q 002405 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKWRVFGDITQEQKIQ 498 (927)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag-~dg~i-~wd~~--s~~w~~f~~~~~e~~~~ 498 (927)
... ...+..+...+.+++|+|||++|++++ .++.+ +|++. ++..+.+... ...
T Consensus 162 ~~~-------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~ 218 (297)
T 2ojh_A 162 SGV-------------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS----AYG 218 (297)
T ss_dssp TCC-------------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC----SEE
T ss_pred CCc-------------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC----Ccc
Confidence 321 233445677899999999999998776 47777 88874 4444443321 134
Q ss_pred EEEEEee--CCEEEEEEeecCC------CeEEEEEeeCCCCCccceeEEEecC--CccEEEEccCCEEEEEEcC
Q 002405 499 SKGLLWL--GKIIVVCNYIDSS------NTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILVTYRP 562 (927)
Q Consensus 499 v~~~~W~--~~~li~~~~~~~~------~~~~l~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~v~~~d 562 (927)
+..+.|. ++.+++++..... ....|.+|+.+.-....+....... ...+.+++.++.|++++.+
T Consensus 219 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 219 DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 5567885 5567666443221 3467888877421111121111112 2235678888888776654
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=5.1e-13 Score=163.51 Aligned_cols=245 Identities=9% Similarity=0.071 Sum_probs=138.9
Q ss_pred cccEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceE--EEeeccCCeEE
Q 002405 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHML 146 (927)
Q Consensus 69 ~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~l~ 146 (927)
...++.|+|||++++++ +|.|++|++..+.......++... ...... .++++|++.++
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD------------------EFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT------------------TCCSCCCEEEECTTSSEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh------------------hhcccccceEECCCCCEEE
Confidence 34689999999988886 899999998766544333322211 000011 36788999998
Q ss_pred EEecCC---------cEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEc
Q 002405 147 LGLSDG---------SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (927)
Q Consensus 147 v~~~dg---------~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (927)
.++.+. .+.+ |+....... .+..+...+..
T Consensus 78 ~~~~~~~~~r~~~~~~~~~--~d~~~~~~~-----------------------------------~l~~~~~~~~~---- 116 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDI--YDLNKRQLI-----------------------------------TEERIPNNTQW---- 116 (740)
T ss_dssp EEEEEEECSSSCEEEEEEE--EETTTTEEC-----------------------------------CSSCCCTTEEE----
T ss_pred EEECCeeeEEEccceEEEE--EECCCCcEE-----------------------------------EcccCCCccee----
Confidence 888753 3334 333222111 11122233444
Q ss_pred cCcceEEEEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE------------------EEEEcCCCcEEEEEe
Q 002405 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV------------------CASIAPEQQILAVGT 275 (927)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v------------------~v~~sp~~~~la~g~ 275 (927)
+++||||+.++... ++.+.+|+...++.. .++...+ .++|||||+.||.++
T Consensus 117 ------~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 117 ------VTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp ------EEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ------eEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 34577887776653 466777776543321 1222222 388999999999886
Q ss_pred cCC------------------------------------eEEEEeccC---CCc-ceEEEeeecCCCCCCCCCCeeEEEE
Q 002405 276 RRG------------------------------------VVELYDLAE---SAS-LIRTVSLYDWGYSMDDTGPVSCIAW 315 (927)
Q Consensus 276 ~Dg------------------------------------~V~vwd~~~---~~~-~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (927)
.|. +|++||+++ ... ....+.... ...+|...+..++|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~w 267 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA--SMLIGDHYLCDVTW 267 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH--HHHTSCEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc--cCCCCCeEEEEEEE
Confidence 543 345555543 110 111221100 00026777999999
Q ss_pred CCCCCEEEEEEcC----CcEEEEEccCCe----eE--EEe--cccccccee-----cceecCCCCCCccccc-ccc----
Q 002405 316 TPDNSAFAVGWKS----RGLTVWSVSGCR----LM--STI--RQISLSSIS-----SPIVKPNQDCKYEPLM-SGT---- 373 (927)
Q Consensus 316 spdg~~Lasg~~D----g~v~vW~~~~~~----~~--~~l--~~~~~~~v~-----s~~~sp~~~~~~~~l~-sg~---- 373 (927)
||||+.++..... ..|.+||+.+++ +. .++ .++ ...+. +++|+||+ ..++ ..+
T Consensus 268 spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G 342 (740)
T 4a5s_A 268 ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG----NSFYKIISNEEG 342 (740)
T ss_dssp EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS----SEEEEEEECTTS
T ss_pred eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC----CEEEEEEEcCCC
Confidence 9999977665432 369999998875 21 122 223 34444 78899998 4333 111
Q ss_pred --eeEEEcCCCceEEEE
Q 002405 374 --SMMQWDEYGYRLYAI 388 (927)
Q Consensus 374 --~~~~W~~~~~~l~~~ 388 (927)
.+..|+..+++....
T Consensus 343 ~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 343 YRHICYFQIDKKDCTFI 359 (740)
T ss_dssp CEEEEEEETTCSSCEES
T ss_pred ceEEEEEECCCCceEec
Confidence 566677766554443
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.56 E-value=2.5e-12 Score=142.69 Aligned_cols=282 Identities=12% Similarity=0.091 Sum_probs=157.2
Q ss_pred cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecC----cEEEEEEEEecCceeecCCCCCCCcc
Q 002405 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQITEKSIQIGGKQPSGLF 114 (927)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~d----g~l~i~~l~~~~~~~~~~~~~~~~~~ 114 (927)
++.|.+|..+.....+...... +.+....++|+|||++|++++.+ |.+.+|++.........
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~--------- 91 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL--------- 91 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---------
T ss_pred CCCEEEEEEeCCCCCEEEeecc-----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---------
Confidence 4689999774211122211111 22344679999999999999875 79999999753211100
Q ss_pred ceeeeEEeecccccccccceEEEeeccCCeEEEEe-cCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccc
Q 002405 115 FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (927)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~-~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 193 (927)
+. .. .........++.+++.++++. .++.+.+|+.+....... + .....+ .+.
T Consensus 92 ~~----~~------~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~---------~~~~~~-~g~----- 145 (361)
T 3scy_A 92 LN----TQ------KTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLP-A---------SDVIEF-KGS----- 145 (361)
T ss_dssp EE----EE------ECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCS-C---------SEEEEC-CCC-----
T ss_pred ee----Ee------ccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcc-c---------ceeEEc-cCC-----
Confidence 00 00 000112233444777777776 477888876643211100 0 000000 000
Q ss_pred cCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEE-eeecCccceeeecccc---------------e-ecCC
Q 002405 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC-SVSKKGLKLAEFIKID---------------K-ELGS 256 (927)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~-~~~d~~~~~w~~~~~~---------------~-~~~h 256 (927)
+ ......+...+.+ ++++|||+.+++ ...++.+.+|+..... . ...+
T Consensus 146 ---~---~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 146 ---G---PDKERQTMPHLHC----------VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp ---C---SCTTTCSSCCEEE----------EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred ---C---CCccccCCCcceE----------EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 0 0000111222333 456888885544 4456778888654321 1 1223
Q ss_pred CCeE-EEEEcCCCcEEEEEe-cCCeEEEEeccCCCcce--EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC--Cc
Q 002405 257 GDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RG 330 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D--g~ 330 (927)
.... .++|+|+|+++++++ .+++|.+|++++ +... ..+.. ...+.....+++|||||++|+++..+ +.
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 3334 999999999887777 689999999985 5332 22221 11234456899999999999777654 89
Q ss_pred EEEEEcc--CCe--eEEEeccccccceecceecCCCCCCcccccccc----eeEE--EcCCCceEEEE
Q 002405 331 LTVWSVS--GCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ--WDEYGYRLYAI 388 (927)
Q Consensus 331 v~vW~~~--~~~--~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~--W~~~~~~l~~~ 388 (927)
+.+|++. ++. .+..+.. ...+..++|+|++ ..+..+. .+.+ |+..++++...
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9999995 344 3333332 2356778899998 5444332 5556 45566665443
No 155
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.56 E-value=1.1e-12 Score=144.46 Aligned_cols=259 Identities=10% Similarity=-0.000 Sum_probs=166.4
Q ss_pred EEEEeCCcEEEEeee-------cCccceeeeccccee---cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEeccCCCcce
Q 002405 224 FVLYSNGQLMSCSVS-------KKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLI 292 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~-------d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~l-a~g~~Dg~V~vwd~~~~~~~~ 292 (927)
++++|||+.++++.. ++.+.+||..+++.. .....+..++|+|+++.+ +++..++.|.+||..+ ++.+
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~ 124 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT-GEVK 124 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT-CCEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC-CeeE
Confidence 556888877666653 456888887765432 112233389999999955 4556679999999987 7666
Q ss_pred EEEeeecCC-CCCCCCCCeeEEEECCCCCEEEEEE--cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc
Q 002405 293 RTVSLYDWG-YSMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (927)
Q Consensus 293 ~~l~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg~--~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l 369 (927)
..+...... ........+.+++|+|||+.++++. .++.|.+||..+++....+..+ ...+..++++|++ ..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg----~~l 199 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEG----KRL 199 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTT----TEE
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECCCC----CEE
Confidence 666551100 0000011268899999999887776 4788999999999888888744 3457889999998 544
Q ss_pred cccc---eeEEEcCCCceEEEEEcC----CcceE--EEEec-cceeeec-ccCCCeeeeeeeecCCeEEEeecCCCCcce
Q 002405 370 MSGT---SMMQWDEYGYRLYAIEEG----SSERV--LIFSF-GKCCLNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (927)
Q Consensus 370 ~sg~---~~~~W~~~~~~l~~~~~~----~~~~v--~~~~~-~~~~~s~-s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (927)
..+. .+.+|+..+++....... +...+ +++++ ++.+..+ ..++.+.+|+...+...
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------------- 266 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL------------- 266 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-------------
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-------------
Confidence 3332 788999999888766543 23333 45666 6655444 44577888876443321
Q ss_pred EEEeecCcccccCCCceEEEEEccCCCEEEEEe-CCceE-EEEccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEe
Q 002405 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (927)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag-~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~ 514 (927)
..+... .+ ..++|+|||+++++++ .++.+ +||..+++....-. . .....++.|. ++.+.+++.
T Consensus 267 -------~~~~~~-~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~--~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 267 -------AKVAAP-ES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--T--PTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp -------EEEECS-SC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--C--CSEEEEEEECTTSCEEEEEEE
T ss_pred -------EEEEcC-CC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--c--CCCCCeEEEcCCCCEEEEEEc
Confidence 011111 12 4589999999877776 58888 99998876432111 0 0134567775 555666544
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=3.9e-13 Score=146.92 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=145.6
Q ss_pred cEEEEeeecCccceeeeccccee----cCCC--CeEEEEEcCCCcEE-EEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 231 QLMSCSVSKKGLKLAEFIKIDKE----LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 231 ~~~~~~~~d~~~~~w~~~~~~~~----~~h~--~~v~v~~sp~~~~l-a~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
++++++..++++.+||..+++.. .++. .+.+++|+|+++.+ +++..++.|.+||+.+ ++.+..+.... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~---~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLST---P 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCB---T
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCC---c
Confidence 45677777888888887665433 2332 23389999999765 5566689999999987 66666555310 0
Q ss_pred CCCCCCeeEEEECCCCCEEEEEE------------cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccc-
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM- 370 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~------------~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~- 370 (927)
..|...+.+++|+|||+.|+++. .++.|.+||+.+++....+... ..+.+++++|++ ..+.
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~ 151 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDG----SKLYG 151 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTS----SCEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCC----CEEEE
Confidence 00122577899999999999886 5799999999988877776542 457788999998 5443
Q ss_pred ccceeEEEcCCCceEEEEEcCCc-ceEEEEec-cceeeecccCCCee--eeeeeecCC----------eEEEeecCCCCc
Q 002405 371 SGTSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRGVSGMTY--ARQVIYGED----------RLLVVQSEDTDE 436 (927)
Q Consensus 371 sg~~~~~W~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~s~s~d~~~~--~w~~~~~~~----------~~~~~~~~~~~~ 436 (927)
+...+.+|+..++++......+. ..-..+++ ++.+...+...... .+....... .+.++.......
T Consensus 152 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp ESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred eCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 33489999999988876665432 11123444 44443333222111 111100000 111111110000
Q ss_pred ceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 437 ~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
. ...+..+...+.+++|+|||++++++ ++.+ +||+.+++
T Consensus 232 -----~--~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~ 271 (337)
T 1pby_B 232 -----A--MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA 271 (337)
T ss_dssp -----E--EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred -----e--EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc
Confidence 0 01122344567889999999999988 6778 99987654
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.55 E-value=9.8e-14 Score=158.25 Aligned_cols=205 Identities=12% Similarity=0.112 Sum_probs=132.1
Q ss_pred CCCeE-EEEEcCCCcEEE----EEecCCeEEEEeccCCC-------cceEEEeeecCCCCCCCCCCeeEEEECCC-CCEE
Q 002405 256 SGDAV-CASIAPEQQILA----VGTRRGVVELYDLAESA-------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAF 322 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~la----~g~~Dg~V~vwd~~~~~-------~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~L 322 (927)
+...+ +++|+|++++|| +|+.|++|+|||+.+.. +.+..+.. ..+|.+.|++++|+|+ +.+|
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL-----LKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC-----CCSGGGSEEEEEECSSCTTEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec-----cCCCCCceEEEEECCCCCCEE
Confidence 45567 999999999999 78889999999997520 12112221 1138999999999998 8999
Q ss_pred EEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCC-------
Q 002405 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS------- 392 (927)
Q Consensus 323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~------- 392 (927)
|+|+.||+|++||+.++.......+| ...|.+++|+|++ ..+++|+ ++++|+.+ ++.......|
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEECTTS----SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred EEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEEcCCC----CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 99999999999999888766666565 6789999999998 7888776 89999998 4444444332
Q ss_pred cceEEEEec---cceee-ecccCC------CeeeeeeeecCCeEEEeecCCCCcceEEEeecC-cccccCCCceEEEEEc
Q 002405 393 SERVLIFSF---GKCCL-NRGVSG------MTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAAS 461 (927)
Q Consensus 393 ~~~v~~~~~---~~~~~-s~s~d~------~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~I~~va~s 461 (927)
...+..+.+ ...++ ..+.++ .+++|++...+.+ ....|....-+ ..+-+...+-..+..-
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~---------~~~~~~~~~~~~~~~~~~r~~~~~~~~l 310 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEK---------HPEIFVNFMEPCYGSCTERQHHYYLSYI 310 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTC---------CCCEEEECCCSSCCCCSSSCCCEEEEEE
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCC---------CCcceEecccCCCCCCCCcCcceeeehh
Confidence 236766666 33332 222332 2667776543321 01122211111 1111222333334444
Q ss_pred cCCCEEEEEeCCc-eE-EEEc
Q 002405 462 KDGMFLAVAGLHG-LI-LYDI 480 (927)
Q Consensus 462 pdG~~la~ag~dg-~i-~wd~ 480 (927)
+|.+++.+++... -+ +...
T Consensus 311 ~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 311 EEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp GGGTEEEEEETTCSBCEEEEE
T ss_pred ccCCEEEEecCCCCceeEEEe
Confidence 7888777776643 34 5554
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.53 E-value=2.9e-12 Score=142.21 Aligned_cols=260 Identities=10% Similarity=0.073 Sum_probs=145.9
Q ss_pred eEEEEEecCeEEEEEcc-----CeEEEeecCCceeEEEEEeeChHhhhhcc-cccEEEEcCCccEEEEEe-cCcEEEEEE
Q 002405 23 QIIYFKVNNGLLLIASP-----CHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVT-SSLYLHIFK 95 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~~-----~~v~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wspDg~~Lav~t-~dg~l~i~~ 95 (927)
.-++|||||++|++++. +.+.+|+.+.....+...... ...+ ....+++ ||++|+++. .++.+.+|+
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~----~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ----KTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE----ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe----ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 34889999998887754 599999885221122222111 1112 2345666 899888877 578999999
Q ss_pred EEecCceeecCCCCCCCccceeeeEEeecc--ccccccc--ceEEEeeccCCeEEEEec-CCcEEEEecCCccc----cc
Q 002405 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQ--LPFAEKG--LSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFY----GA 166 (927)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~----~~ 166 (927)
+........... . ....+. ....... ..-.+++++++.++++.. ++.+.+|+++.... ..
T Consensus 127 ~~~~g~~~~~~~----------~-~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 127 IGQDGALLPASD----------V-IEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp BCTTSCBCSCSE----------E-EECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred eCCCCcCcccce----------e-EEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 864321100000 0 000000 0000001 111366788887777654 77888887764332 00
Q ss_pred eeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEee-ecCcccee
Q 002405 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLA 245 (927)
Q Consensus 167 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~w 245 (927)
+... . ............... ++++|||+.+++.. .++.+.+|
T Consensus 196 l~~~-----------------------~----~~~~~~~~~~~~~~~----------~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 196 FLTK-----------------------G----TPEAFKVAPGSGPRH----------LIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp CEEE-----------------------E----EEEEEECCTTCCEEE----------EEECTTSSEEEEEETTTCEEEEE
T ss_pred eeec-----------------------c----cccceecCCCCCCeE----------EEEcCCCCEEEEEcCCCCeEEEE
Confidence 1000 0 000000111222333 45688888665555 57788888
Q ss_pred eecccce-----e---cCCCCeE-EEEEcCCCcEEEEEecC--CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEE
Q 002405 246 EFIKIDK-----E---LGSGDAV-CASIAPEQQILAVGTRR--GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (927)
Q Consensus 246 ~~~~~~~-----~---~~h~~~v-~v~~sp~~~~la~g~~D--g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~ 314 (927)
+...++. . ..+.... .++|+|+|++|+++..+ ++|.+|+++........+.... ....+.+++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~------~g~~~~~~~ 312 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL------TGIHPRNFI 312 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE------CSSCCCEEE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec------CCCCCceEE
Confidence 8764322 1 2233444 99999999988766654 8999999963122222222110 134578999
Q ss_pred ECCCCCEEEEEE-cCCcEEEEEc--cCCeeE
Q 002405 315 WTPDNSAFAVGW-KSRGLTVWSV--SGCRLM 342 (927)
Q Consensus 315 ~spdg~~Lasg~-~Dg~v~vW~~--~~~~~~ 342 (927)
|+|||++|++++ .++.+.+|++ .++++.
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 999999998888 5689999755 455544
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.52 E-value=2.2e-13 Score=149.85 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=110.7
Q ss_pred EEeCCcEEEEeeecCccceeeeccccee---cCCC--CeEEEEEcCCCcEE-EEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~--~~v~v~~sp~~~~l-a~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
++++++++++++.++++.+||..+++.. ..+. .+..++|+|+++.+ +++..+++|.+||+.+ ++....+....
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~ 85 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSS 85 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCC
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEccc
Confidence 4678888999999999999998765432 2222 33489999999865 4556789999999987 66555554310
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcC------------CcEEEEEccCCee---EEEeccccccceecceecCCCCC
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKS------------RGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDC 364 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~D------------g~v~vW~~~~~~~---~~~l~~~~~~~v~s~~~sp~~~~ 364 (927)
.+ ..+...+.+++|+|||++|++++.+ +.|.+||+.+++. ...+.. ...+.+++|+|++
T Consensus 86 ~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg-- 159 (349)
T 1jmx_B 86 VP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDG-- 159 (349)
T ss_dssp ST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTS--
T ss_pred cc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC--CCcccceeECCCC--
Confidence 00 0002237889999999999999865 8999999987432 333333 2357888899998
Q ss_pred CcccccccceeEEEcCCCceEEEEEc
Q 002405 365 KYEPLMSGTSMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 365 ~~~~l~sg~~~~~W~~~~~~l~~~~~ 390 (927)
..++.+..+.+|+..++++.....
T Consensus 160 --~l~~~~~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 --SLYVAGPDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp --CEEEESSSEEEECTTTCCEEEEEC
T ss_pred --cEEEccCcEEEEeCCCCceecccc
Confidence 555555589999998888766654
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.49 E-value=1.9e-12 Score=144.25 Aligned_cols=236 Identities=8% Similarity=0.047 Sum_probs=146.2
Q ss_pred EEEEeCCcEEEEeeecCccceeeec-cccee--c---CCCCeEEEEEcCCCcE--EEEEe-------------cCCeEEE
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE--L---GSGDAVCASIAPEQQI--LAVGT-------------RRGVVEL 282 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~-~~~~~--~---~h~~~v~v~~sp~~~~--la~g~-------------~Dg~V~v 282 (927)
++++|||++++++..+ ++.+|+.. +++.. . .+..+.+++|+|+|+. ++++. .+|++++
T Consensus 45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v 123 (365)
T 1jof_A 45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence 5678999988777766 88889875 44321 1 1122337899999994 55653 6899999
Q ss_pred EeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEcc-CCeeE--EEeccc-cccceecce
Q 002405 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-GCRLM--STIRQI-SLSSISSPI 357 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW~~~-~~~~~--~~l~~~-~~~~v~s~~ 357 (927)
|+++..++....+..... .+...+.+++|||||++|+++.. ++.|.+|++. ++++. ..+... +...+..++
T Consensus 124 ~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 124 FSVSETGKLEKNVQNYEY----QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEECTTCCEEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred EccCCCCcCcceEeeEEe----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 999743554444432110 14567899999999999888764 5799999997 66543 333311 134578889
Q ss_pred ecCCCCCCccccccc----ceeEEEcC--CCceEEE---EE---c----CCcc------eE--EE-Eec-cceeeecccC
Q 002405 358 VKPNQDCKYEPLMSG----TSMMQWDE--YGYRLYA---IE---E----GSSE------RV--LI-FSF-GKCCLNRGVS 411 (927)
Q Consensus 358 ~sp~~~~~~~~l~sg----~~~~~W~~--~~~~l~~---~~---~----~~~~------~v--~~-~~~-~~~~~s~s~d 411 (927)
|+|++ +.+..+ .++.+|+. .++++.. .. . +|.. .+ ++ +++ ++.+++++.+
T Consensus 200 ~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 200 MHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp ECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred ECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99998 544322 26677754 3555421 11 1 1221 23 45 666 7777655543
Q ss_pred C------CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEcc---CCCEEEEEeCC-ceE-EEEc
Q 002405 412 G------MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLH-GLI-LYDI 480 (927)
Q Consensus 412 ~------~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~sp---dG~~la~ag~d-g~i-~wd~ 480 (927)
. ++.+|++..... +.. +......+...+..++||| ||++|++++.+ +.+ +|++
T Consensus 276 ~~~~~~~~i~v~~~~~~g~-~~~---------------~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGS-IEK---------------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp SSTTSCCEEEEEEECTTSC-EEE---------------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CCCCCCCeEEEEEECCCCC-EEE---------------eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 2 688888752111 100 0000111222345689999 89999999875 788 9998
Q ss_pred cCCc
Q 002405 481 RQKK 484 (927)
Q Consensus 481 ~s~~ 484 (927)
....
T Consensus 340 ~~~~ 343 (365)
T 1jof_A 340 KDEF 343 (365)
T ss_dssp ETTE
T ss_pred chhh
Confidence 7663
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=2e-12 Score=142.21 Aligned_cols=278 Identities=12% Similarity=0.118 Sum_probs=149.1
Q ss_pred EEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEE-ecCcEEEEEEEEecCce
Q 002405 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQITEKS 102 (927)
Q Consensus 25 v~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~-t~dg~l~i~~l~~~~~~ 102 (927)
+++++++++++++ .+++|.+||.. .+..+...... ..+....++|+|||+.++++ ..++.|.+|++..+...
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 3577888888877 58899999996 44444333211 11135689999999977655 46789999997643221
Q ss_pred eecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecC------------CcEEEEecCCccccc-eee
Q 002405 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD------------GSLYSISWKGEFYGA-FEL 169 (927)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~d------------g~i~~~~w~~~~~~~-~~~ 169 (927)
.........+ . .+....-.+++++++.++++..+ +.+.+++........ ...
T Consensus 79 ~~~~~~~~~~--------~-------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 79 FHANLSSVPG--------E-------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp EEEESCCSTT--------E-------EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred EEEEcccccc--------c-------ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 1111000000 0 00001113567888888888865 788776654311111 100
Q ss_pred cccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccC------------------------cceEEE
Q 002405 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP------------------------MRLLFV 225 (927)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~------------------------~~~~~~ 225 (927)
...+. .+..+.++++..+..... . ...+.......+..+..... .-..++
T Consensus 144 ~~~~~---~~~~~~~s~dg~l~~~~~--~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 144 FPMPR---QVYLMRAADDGSLYVAGP--D-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EECCS---SCCCEEECTTSCEEEESS--S-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred ccCCC---cccceeECCCCcEEEccC--c-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 00111 122222333333221111 0 11111111111222211100 001122
Q ss_pred EEeCCc-----------EEEEeeecCccceeeecccceecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEeccCCCcce
Q 002405 226 LYSNGQ-----------LMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLI 292 (927)
Q Consensus 226 ~s~dG~-----------~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~ 292 (927)
+++|+. ++.....++.++.++... +.... +++|+| ++++++++ ++.|.+||+.+ ++.+
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~ 288 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLI 288 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEE
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEE
Confidence 222221 011112223333333211 22344 889999 99999988 88999999987 6666
Q ss_pred EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
..+.. ...+.+++|+|||+.|++++.++.|.+||+.+++.+.++..
T Consensus 289 ~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 289 KAANL---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEEC---------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEcC---------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 65543 33468999999999999988899999999999888777654
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=165.10 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=145.0
Q ss_pred EEEEeCCcEEEEeee---------cCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcc
Q 002405 224 FVLYSNGQLMSCSVS---------KKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~---------d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~ 291 (927)
+++||||+.+++++. ++++++|+..+++.. ......+ +++|||||+.||+++ |++|++|++.+ +..
T Consensus 65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~-g~~ 142 (719)
T 1z68_A 65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG-DPP 142 (719)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT-SCC
T ss_pred EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC-CCc
Confidence 456899998888776 678999998776541 1123446 899999999999985 78999999976 543
Q ss_pred eEEE-eeecCCCCCCCCC---------CeeEEEECCCCCEEEEEEcCC--------------------------------
Q 002405 292 IRTV-SLYDWGYSMDDTG---------PVSCIAWTPDNSAFAVGWKSR-------------------------------- 329 (927)
Q Consensus 292 ~~~l-~~~~~~~~~~h~~---------~V~~l~~spdg~~Lasg~~Dg-------------------------------- 329 (927)
.+.. .+.......+|.. ...+++|||||+.||+++.|.
T Consensus 143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 3211 1100000001221 125899999999999988663
Q ss_pred --cEEEEEccCCeeE--EE------eccccccceecceecCCCCCCcccccccc-------eeEEEc----CCCceEEEE
Q 002405 330 --GLTVWSVSGCRLM--ST------IRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWD----EYGYRLYAI 388 (927)
Q Consensus 330 --~v~vW~~~~~~~~--~~------l~~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~----~~~~~l~~~ 388 (927)
.+.+||+.++... .. +.++ ...+.+++|+|++ ..+++.. .+.+|+ ..++++...
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SpD~----~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASS-DYYFSWLTWVTDE----RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTS-CEEEEEEEESSSS----EEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCC-cceEEEeEEeCCC----eEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889999887642 11 2233 5678899999997 5554421 477788 777665443
Q ss_pred E----cCCcceE-------EEEec-cceee--ecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCc
Q 002405 389 E----EGSSERV-------LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (927)
Q Consensus 389 ~----~~~~~~v-------~~~~~-~~~~~--s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (927)
. .+|...+ ..+++ ++.++ +...++..++|.+..... .+..+..+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-------------------~~~~lt~~~~~ 358 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-------------------NAIQITSGKWE 358 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-------------------TCEECSCSSSC
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-------------------ceEecccCceE
Confidence 3 2444332 34555 55433 344455444433221111 02334456677
Q ss_pred eEEEEEccCCCEEEEEeCC-----ceE-EEEccC
Q 002405 455 VQHVAASKDGMFLAVAGLH-----GLI-LYDIRQ 482 (927)
Q Consensus 455 I~~va~spdG~~la~ag~d-----g~i-~wd~~s 482 (927)
+..+.++ ||+.|+..+.+ +.. +|.+..
T Consensus 359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 8888888 88888877765 666 887653
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.43 E-value=4e-12 Score=155.60 Aligned_cols=255 Identities=10% Similarity=0.116 Sum_probs=158.9
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---------CcE
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------RGL 331 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---------g~v 331 (927)
+++|+|++++++++ ||+|++||+.+ ++....+..... ..+.....+++|||||++||.++.+ +.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTF---DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTT---TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhh---hhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 79999999999996 99999999987 666655555110 0012233558999999999999886 455
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc--eeEEEcCCCceEEEEE-cCCcceE------------
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE-EGSSERV------------ 396 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~-~~~~~~v------------ 396 (927)
.+||+.++++. .+..+ ...+..++||||+ +.++.+. .+.+|+..+++..... .++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~-~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERI-PNNTQWVTWSPVG----HKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEETTTTEEC-CSSCC-CTTEEEEEECSST----TCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEECCCCcEE-EcccC-CCcceeeEECCCC----CEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 69999998754 35444 5678999999999 6666544 8889998887655432 2322222
Q ss_pred -------EEEec-cceeeecccCCC-eeeeeeeecCC-----------------------eEEEeecCC---CCcceEEE
Q 002405 397 -------LIFSF-GKCCLNRGVSGM-TYARQVIYGED-----------------------RLLVVQSED---TDELKILH 441 (927)
Q Consensus 397 -------~~~~~-~~~~~s~s~d~~-~~~w~~~~~~~-----------------------~~~~~~~~~---~~~~~w~~ 441 (927)
..+++ |+.++.++.|.+ ++.|.+..... .+.++.-.. ........
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 56778 888888876665 77776643221 111111111 00001112
Q ss_pred eecCcccccCCCceEEEEEccCCCEEEEEeCC----ceE-EEEccCCc--E--EeeCC---ccceeeeE---EEEEEee-
Q 002405 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKK--W--RVFGD---ITQEQKIQ---SKGLLWL- 505 (927)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~spdG~~la~ag~d----g~i-~wd~~s~~--w--~~f~~---~~~e~~~~---v~~~~W~- 505 (927)
+..|..+.+|...+..++|||||+.++....+ ..+ +||+.+++ | ..... +.++.-+. .....|.
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 22233333577789999999999977766443 356 99998886 2 11110 11111111 1245675
Q ss_pred -CCEEE-EEEeecCCCeEEEEEeeCC
Q 002405 506 -GKIIV-VCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 506 -~~~li-~~~~~~~~~~~~l~l~~~~ 529 (927)
+..++ .. .+.++..+|.+|+.+
T Consensus 329 DG~~l~~~~--s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 329 DGNSFYKII--SNEEGYRHICYFQID 352 (740)
T ss_dssp TSSEEEEEE--ECTTSCEEEEEEETT
T ss_pred CCCEEEEEE--EcCCCceEEEEEECC
Confidence 44555 33 334667889888874
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=9.5e-12 Score=138.46 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=143.2
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccE--EEEEe-------------
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVT------------- 86 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~--Lav~t------------- 86 (927)
..-++|+|||++|++++.+++.+|+.+..+... ..... ...|....++|+|||+. ++++.
T Consensus 42 ~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~-~~~~~----~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIV-HEASH----PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEE-EEEEE----ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CcEEEECCCCCEEEEEccceEEEEEECCCCCEE-EeeEe----ecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 335899999998887765599999984122221 11110 01233456999999995 44543
Q ss_pred cCcEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec-CCcEEEEecCCcccc
Q 002405 87 SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYG 165 (927)
Q Consensus 87 ~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~-dg~i~~~~w~~~~~~ 165 (927)
.+|.+.+|++....... ..+. ..... ......-.+++++++.++++.. ++.|.+++.+. . +
T Consensus 117 ~~g~v~v~~~~~~g~~~------------~~~~-~~~~~---~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~-g 178 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLE------------KNVQ-NYEYQ---ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-S-G 178 (365)
T ss_dssp SCCEEEEEEECTTCCEE------------EEEE-EEECC---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-T-S
T ss_pred CCceEEEEccCCCCcCc------------ceEe-eEEeC---CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-C-C
Confidence 58899999986322110 0000 00000 0111111356788888877653 56788776652 1 1
Q ss_pred ceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeee-cCccce
Q 002405 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKL 244 (927)
Q Consensus 166 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~ 244 (927)
.... +.. .....+...+..+ +++|||+.+++... ++++.+
T Consensus 179 ~~~~---------~~~--------------------~~~~~~g~~p~~~----------~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 179 EVEL---------VGS--------------------VDAPDPGDHPRWV----------AMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp CEEE---------EEE--------------------EECSSTTCCEEEE----------EECTTSSEEEEEETTTTEEEE
T ss_pred CEEE---------eee--------------------EecCCCCCCCCEe----------EECCCCCEEEEEECCCCeEEE
Confidence 1100 000 0000012234444 45788876665553 566777
Q ss_pred eeec--ccce------e-------cCCCC------eE-EEE-EcCCCcEEEEEecCC------eEEEEeccCCCcceEE-
Q 002405 245 AEFI--KIDK------E-------LGSGD------AV-CAS-IAPEQQILAVGTRRG------VVELYDLAESASLIRT- 294 (927)
Q Consensus 245 w~~~--~~~~------~-------~~h~~------~v-~v~-~sp~~~~la~g~~Dg------~V~vwd~~~~~~~~~~- 294 (927)
|+.. +++. . .+|.. .+ .++ |+|||++|+++..+. +|++|+++..+.....
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 6543 2211 1 12332 35 899 999999888776533 8999999632543332
Q ss_pred --EeeecCCCCCCCCCCeeEEEECC---CCCEEEEEEcC-CcEEEEEccCCe
Q 002405 295 --VSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKS-RGLTVWSVSGCR 340 (927)
Q Consensus 295 --l~~~~~~~~~~h~~~V~~l~~sp---dg~~Lasg~~D-g~v~vW~~~~~~ 340 (927)
... +...+..++|+| ||++|++++.+ ++|++|++.+..
T Consensus 300 ~~~~~--------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 300 FLSPT--------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEC--------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeeec--------CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 222 344567899999 89999999875 899999997763
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.38 E-value=3.8e-11 Score=133.34 Aligned_cols=275 Identities=12% Similarity=0.070 Sum_probs=150.3
Q ss_pred ceEEEEEecCeEEEEEc-----------cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec--C
Q 002405 22 QQIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--S 88 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~--d 88 (927)
.+-++|||||+++.++. +++|.+||.. ....+....-.......-.....++++|||++|+++.. +
T Consensus 52 ~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~ 130 (361)
T 2oiz_A 52 NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA 130 (361)
T ss_dssp EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS
T ss_pred CCceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC
Confidence 34689999999888774 4679999985 55555544322111101122357999999999999874 5
Q ss_pred cEEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEEEecCCcEEEEecCCccccce
Q 002405 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAF 167 (927)
Q Consensus 89 g~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~dg~i~~~~w~~~~~~~~ 167 (927)
+.|.+||++........ +...+.. .+ .+.+++ ..++..+.||.+..+.++.......
T Consensus 131 ~~v~v~d~~~~~~~~~~--------------------i~~~~~~-~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~ 188 (361)
T 2oiz_A 131 TSIGIVDVAKGDYVEDV--------------------TAAAGCW-SV-IPQPNRPRSFMTICGDGGLLTINLGEDGKVAS 188 (361)
T ss_dssp EEEEEEETTTTEEEEEE--------------------GGGTTEE-EE-EECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCcEEEEE--------------------ecCCCcc-ee-EEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence 89999998643211000 1111110 11 233333 4556667788777666542111100
Q ss_pred eecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccce---
Q 002405 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--- 244 (927)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~--- 244 (927)
... ... -+..+. ..+ .+...+.....+..+.+|++.+.......+.+
T Consensus 189 ~~~-------~~~--~~~~~~--------------------~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~ 238 (361)
T 2oiz_A 189 QSR-------SKQ--MFSVKD--------------------DPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP 238 (361)
T ss_dssp EEE-------CCC--CSCTTT--------------------SCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE
T ss_pred ecc-------ccc--eEcCCC--------------------Cce-EEEecccCCEEEEEeCCCeEEEEEecCCCceeccc
Confidence 000 000 000000 000 00001111111222333433332222222111
Q ss_pred eeeccccee-cC--CCCeEEEEEcCCCcEEEEEec-----------CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCe
Q 002405 245 AEFIKIDKE-LG--SGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (927)
Q Consensus 245 w~~~~~~~~-~~--h~~~v~v~~sp~~~~la~g~~-----------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (927)
|........ .+ ....--++|+|+++.+.++.. +++|.+||+.+ ++.+.++.. +. +
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~--------~~--p 307 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPG--------RD--A 307 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEEC--------TT--C
T ss_pred ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEec--------CC--e
Confidence 111110000 00 001112789999887776654 35899999988 777888777 55 8
Q ss_pred eEEEECCCCCEEEEEEcCCcEEEEEccCC--eeEEEeccccccceecceecCCC
Q 002405 311 SCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 311 ~~l~~spdg~~Lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+++|+|||++|++++. ++|.|||..++ +++.++...+ ..-..++++|++
T Consensus 308 ~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G-~~P~~~~~~p~G 359 (361)
T 2oiz_A 308 LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA-EASLQVQFHPVG 359 (361)
T ss_dssp CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC-SSEEEEEECCCS
T ss_pred eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC-CCcEEEEecCCC
Confidence 99999999999999987 99999999999 8888875442 334567788876
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.36 E-value=1.4e-11 Score=137.79 Aligned_cols=220 Identities=11% Similarity=0.065 Sum_probs=136.8
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-E--EEEcCCCcEEEEEe----------------------c
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-C--ASIAPEQQILAVGT----------------------R 276 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~--v~~sp~~~~la~g~----------------------~ 276 (927)
.++|||+.+++...+..+.+|+..+++.. ..+...+ . ..++|++++++... .
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 46899999998888888999988766432 3344444 2 34599999988532 3
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcC------CcEEEEEccCCeeEEEecccc
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS 349 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~D------g~v~vW~~~~~~~~~~l~~~~ 349 (927)
++.|.+||+.+ ++ ...+.. +.+.+..++||| ||+.||.+..+ ..|.+++..++.. ..+..+.
T Consensus 167 ~~~l~~~d~~~-g~-~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~ 235 (388)
T 3pe7_A 167 CCRLMRVDLKT-GE-STVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA 235 (388)
T ss_dssp CEEEEEEETTT-CC-EEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred cceEEEEECCC-Cc-eEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence 46899999886 54 344444 567789999999 99999887763 3677778776643 3343331
Q ss_pred c-cceecceecCCCCCCcccccccc--------eeEEEcCCCceEEE--EEcCCcceE-----EEEec-cceeeec----
Q 002405 350 L-SSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYA--IEEGSSERV-----LIFSF-GKCCLNR---- 408 (927)
Q Consensus 350 ~-~~v~s~~~sp~~~~~~~~l~sg~--------~~~~W~~~~~~l~~--~~~~~~~~v-----~~~~~-~~~~~s~---- 408 (927)
. ..+..++|+|++ ..++..+ .+.+|++.+++... ...++.... ..+++ |+.++..
T Consensus 236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 236 EGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp TTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred CCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 2 357788999998 5443211 28899998876432 222211000 14555 5555532
Q ss_pred -----ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCC-----------ceEEEEEccCCCEEEEEeC
Q 002405 409 -----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----------PVQHVAASKDGMFLAVAGL 472 (927)
Q Consensus 409 -----s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----------~I~~va~spdG~~la~ag~ 472 (927)
..+..+.+|++..+..+ .+..+.. .+.+++|||||++|+.++.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQH---------------------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp -----CCCCEEEEEETTTTEEE---------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cccccCCCCEEEEEeccCCceE---------------------EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 33445666664432211 1112222 4677899999999987764
Q ss_pred -CceE-EEEc
Q 002405 473 -HGLI-LYDI 480 (927)
Q Consensus 473 -dg~i-~wd~ 480 (927)
+|.. +|.+
T Consensus 371 ~~g~~~l~~~ 380 (388)
T 3pe7_A 371 VHGKPALYLA 380 (388)
T ss_dssp TTSSCEEEEE
T ss_pred CCCceeEEEE
Confidence 5655 6644
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.35 E-value=7e-11 Score=132.15 Aligned_cols=277 Identities=13% Similarity=0.009 Sum_probs=155.3
Q ss_pred EEEcCCCcEEEEEec-CCe--EEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 262 ASIAPEQQILAVGTR-RGV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 262 v~~sp~~~~la~g~~-Dg~--V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
.+|||||+.||.++. +|. |.+||+.+ ++....... +...+..++|||||+.|+.++.++.+.+||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~--------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEG--------RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCS--------SCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeC--------CCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 789999999999887 774 77778765 544333333 555555788999999999999999999999998
Q ss_pred CeeEEEeccccccceecc--eecCCCCCCccccc-----------------------cc--ceeEEEcCCCceEEEEEcC
Q 002405 339 CRLMSTIRQISLSSISSP--IVKPNQDCKYEPLM-----------------------SG--TSMMQWDEYGYRLYAIEEG 391 (927)
Q Consensus 339 ~~~~~~l~~~~~~~v~s~--~~sp~~~~~~~~l~-----------------------sg--~~~~~W~~~~~~l~~~~~~ 391 (927)
++.......+ ...+... .++|++ ..++ .+ ..+.+|+..+++......
T Consensus 112 g~~~~~~~~~-~~~~~~~~~~~~~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~- 185 (388)
T 3pe7_A 112 LEENVVYQVP-AEWVGYGTWVANSDC----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ- 185 (388)
T ss_dssp CCEEEEEECC-TTEEEEEEEEECTTS----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-
T ss_pred Ccceeeeech-hhcccccceeECCCC----CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-
Confidence 8765544433 2222222 236665 3322 11 267788888776544432
Q ss_pred CcceE--EEEec--cceeeecccCC----CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC--CceEEEEEc
Q 002405 392 SSERV--LIFSF--GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN--WPVQHVAAS 461 (927)
Q Consensus 392 ~~~~v--~~~~~--~~~~~s~s~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~I~~va~s 461 (927)
+...+ ..+++ ++.++..+.++ ...+|.+...... +..+..+. ..+...+||
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------------------MRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------------------CEESCCCCTTEEEEEEEEC
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------------------eEEeeeCCCCcccccceEC
Confidence 23333 45555 55555444322 2344443321110 22222333 357788999
Q ss_pred cCCCEEEEEeCC-c----eE-EEEccCCcEEeeCCccceeeeE--EEEEEee--CCEEEEEEee----cCCCeEEEEEee
Q 002405 462 KDGMFLAVAGLH-G----LI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWL--GKIIVVCNYI----DSSNTYELLFYP 527 (927)
Q Consensus 462 pdG~~la~ag~d-g----~i-~wd~~s~~w~~f~~~~~e~~~~--v~~~~W~--~~~li~~~~~----~~~~~~~l~l~~ 527 (927)
|||+.||..+.+ + .+ +||+.+++.+.+.......... ..+..|. +..+++.... ...+..+|.+|+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 999988765542 2 37 9999998765432211100011 1123454 3334432111 013445788887
Q ss_pred CCCCCccceeEEEec-----------CCccEEEEccCCEEEEEE-cCCeEEEEEEEEe
Q 002405 528 RYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTY-RPFDVHIFHVKLF 573 (927)
Q Consensus 528 ~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~l~v~~-~d~~i~l~~~~~~ 573 (927)
.+.-.. ..+..... ......++++++.|+..+ .++...||.+.+.
T Consensus 327 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 327 MKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 641110 11111111 112347888898877755 4678888888754
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.32 E-value=7.8e-10 Score=133.34 Aligned_cols=111 Identities=11% Similarity=0.038 Sum_probs=79.5
Q ss_pred EEEEeCCcEEEEeeec----------Cccceeeecc------cce--ec-CCCCeE-EEEEcCCCcEEEEEecCC-----
Q 002405 224 FVLYSNGQLMSCSVSK----------KGLKLAEFIK------IDK--EL-GSGDAV-CASIAPEQQILAVGTRRG----- 278 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d----------~~~~~w~~~~------~~~--~~-~h~~~v-~v~~sp~~~~la~g~~Dg----- 278 (927)
++++|||+.+++.+.+ .++.+|+... ++. +. .+...+ .++|||||+.||.++.++
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 4568999988887766 4677888765 332 24 555667 899999999999888664
Q ss_pred ---eEEEEeccCCC---cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc--EEEEEccCCeeE
Q 002405 279 ---VVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG--LTVWSVSGCRLM 342 (927)
Q Consensus 279 ---~V~vwd~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~--v~vW~~~~~~~~ 342 (927)
+|.+||++..+ ........ |.+.+..++|||||++++++..|+. |.+|++.+++..
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~--------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGG--------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEE--------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred CCcEEEEEEECCCCcccccEEeCCC--------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 79999998314 23333333 6788999999999998888888884 555555455543
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.24 E-value=6.6e-10 Score=121.56 Aligned_cols=237 Identities=11% Similarity=0.017 Sum_probs=148.6
Q ss_pred EEEEeCCcEEEEeeec------------------------Cccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEE
Q 002405 224 FVLYSNGQLMSCSVSK------------------------KGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVG 274 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d------------------------~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g 274 (927)
++++++|+++++...+ +++.+||..+++.. .++.... .++++|+|+++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 3457788877776665 35667776544332 2333344 99999999999999
Q ss_pred ecCCeEEEEeccCCCcceEEEeeec-CCCCCCCCCCeeEEEECC-CCCEEEEEE-cCCcEEEEEccCCeeEEEecccc--
Q 002405 275 TRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTP-DNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQIS-- 349 (927)
Q Consensus 275 ~~Dg~V~vwd~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~sp-dg~~Lasg~-~Dg~v~vW~~~~~~~~~~l~~~~-- 349 (927)
+.++.|++|+.+.....+..+.... .+...++-.....|+++| +|+.+++.+ .++.|++|+.. +..+.++...+
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCC
Confidence 9999999999864111455543210 111123555689999999 888888886 68999999954 45566664321
Q ss_pred -------ccceecceecCC-CCCCcccccccc---eeEEEcCCCceEEEEEc--CCcceEEE--Eec-------cceeee
Q 002405 350 -------LSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERVLI--FSF-------GKCCLN 407 (927)
Q Consensus 350 -------~~~v~s~~~sp~-~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~--~~~~~v~~--~~~-------~~~~~s 407 (927)
......++++|+ + ..+++.. ++..|++++++++.... .+...+.. +++ ++..++
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~ 263 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLD----QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG 263 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTT
T ss_pred CCCCCcccCCCcEEEEECCCC----EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEec
Confidence 233678889988 5 5555433 78999998777777663 23333332 232 222233
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
...+.++++|+...+... .. .....++......++++|||..+++...++.+ .|++..
T Consensus 264 ~~~~~~v~~~~~~~g~~~-~~----------------~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 264 DQEPVQGFVMNFSSGEII-DV----------------FKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CSCCCCEEEEETTTCCEE-EE----------------ECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cCCCcEEEEEEcCCCeEE-EE----------------EcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 334445666664433210 00 00012344567899999999888888888888 998754
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.20 E-value=1.2e-09 Score=122.16 Aligned_cols=272 Identities=11% Similarity=-0.054 Sum_probs=153.5
Q ss_pred EEEEcCCCcEEEEEecC---CeEEEEeccCCCcceEEEeeecCCCCCCCCCC-eeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 261 CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~-V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
+++|||||++||.++.+ ..|.+|++.+ ++. ..+.. +... ...+.|||||+.||.++.++.+.+|++
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~-~~l~~--------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~ 109 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQA-VQLTE--------GKGDNTFGGFISTDERAFFYVKNELNLMKVDL 109 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTT-TEE-EECCC--------SSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCC-CcE-EEeec--------CCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence 67899999998887653 3678888765 432 22222 2223 334789999999999999999999999
Q ss_pred cCCeeEEEeccccccceec-------------------ceecCCCCCCcccccc------c--ceeEEEcCCCceEEEEE
Q 002405 337 SGCRLMSTIRQISLSSISS-------------------PIVKPNQDCKYEPLMS------G--TSMMQWDEYGYRLYAIE 389 (927)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~s-------------------~~~sp~~~~~~~~l~s------g--~~~~~W~~~~~~l~~~~ 389 (927)
.+++.......+ ...... +.++|++ ..++. . ..+.+|+..+++.....
T Consensus 110 ~~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 110 ETLEEQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLT----SWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp TTCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC----SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred CCCCcEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCC----cceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 887655444322 111111 4567776 33321 1 27788998887665444
Q ss_pred cCCcceE--EEEec--cceeeecccCCC----eeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccC--CCceEEEE
Q 002405 390 EGSSERV--LIFSF--GKCCLNRGVSGM----TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVA 459 (927)
Q Consensus 390 ~~~~~~v--~~~~~--~~~~~s~s~d~~----~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~~va 459 (927)
. +...+ ..+++ ++.++..+.++. .++|.+...... +..+..+ ...+..++
T Consensus 185 ~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 185 Q-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------------------VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp E-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------------------CEESSCCCTTEEEEEEE
T ss_pred c-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------------------eeEeeccCCCccccceE
Confidence 2 23333 44555 444544333222 233333211110 1111122 33578899
Q ss_pred EccCCCEEEEEeCC-----ceE-EEEccCCcEEeeCCccceeeeEEEEEEee---CCEEEEEEee-----------cCCC
Q 002405 460 ASKDGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL---GKIIVVCNYI-----------DSSN 519 (927)
Q Consensus 460 ~spdG~~la~ag~d-----g~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~---~~~li~~~~~-----------~~~~ 519 (927)
|||||++|+.++.+ +.+ +||+.+++.+...... . .. ..|. +..++++... ...+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--P---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--S---EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--C---CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 99999998887654 447 9999888765432111 1 11 5674 4445443211 0123
Q ss_pred eEEEEEeeCCCCCccceeEEEec-----------CCccEEEEccCCEEEEEEc-CCeEEEEEEEEec
Q 002405 520 TYELLFYPRYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTYR-PFDVHIFHVKLFG 574 (927)
Q Consensus 520 ~~~l~l~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~l~v~~~-d~~i~l~~~~~~~ 574 (927)
...+.+|+...-.. ..+..... ......+++.+..|+..+. ++...+|.+.+.+
T Consensus 319 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 319 DPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp CCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred CCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence 46788887641111 11211111 0112467888888777654 5677888877544
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.18 E-value=1.3e-09 Score=119.28 Aligned_cols=266 Identities=11% Similarity=0.056 Sum_probs=155.3
Q ss_pred cCCceeeeCCCCCCCCCceEEEEEecCeEEEEEccC-------------------------eEEEeecCCceeEEEEEee
Q 002405 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPC-------------------------HIELWSSSQHKVRLGKYKR 59 (927)
Q Consensus 5 ~g~p~~~~~~~~~~~~~~~iv~fs~dg~lla~~~~~-------------------------~v~IW~~~~~~~~l~~~~r 59 (927)
.-||+.- ... +...-|+++|+|+++++...+ +|.+||.. .+..+.....
T Consensus 14 ~~wp~~~-~~l----~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~ 87 (329)
T 3fvz_A 14 LDWPGVY-LLP----GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGK 87 (329)
T ss_dssp TTCGGGG-CCC----SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECT
T ss_pred cCCchhc-eec----CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCC
Confidence 3588741 122 135568999999999877544 69999985 3333322211
Q ss_pred ChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecC-ceeecCCCCCCCccceeeeEEeecccccccccceEE--
Q 002405 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS-- 136 (927)
Q Consensus 60 ~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 136 (927)
........++++|||+.+++.+.++.|+.|+..... ....+......+. . ........
T Consensus 88 -----~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~---------~-----~~~~~~P~~i 148 (329)
T 3fvz_A 88 -----NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS---------D-----QNHFCQPTDV 148 (329)
T ss_dssp -----TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC---------S-----TTCCSSEEEE
T ss_pred -----CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC---------C-----ccccCCCcEE
Confidence 122345689999999988888888999999864221 1111110000000 0 00011122
Q ss_pred EeeccCCeEEEEe--cCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEE
Q 002405 137 NIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (927)
Q Consensus 137 ~i~~~~~~l~v~~--~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i 214 (927)
++.+++..++++. .++.|.+++-++....... ...... .....+-.....
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~---------------~~g~~~------------~~~~~~~~~p~g- 200 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG---------------EESSGS------------SPRPGQFSVPHS- 200 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC---------------EECCSS------------SCCTTEESCEEE-
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec---------------cCCCCC------------CCCCcccCCCcE-
Confidence 3444344566665 4778877654332211110 000000 000000111222
Q ss_pred EEccCcceEEEEEeC-CcEEEEeeecCccceeeeccccee-----cCCCCeE-EEEEcCCCcEEEE-------EecCCeE
Q 002405 215 ELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAV-------GTRRGVV 280 (927)
Q Consensus 215 ~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~w~~~~~~~~-----~~h~~~v-~v~~sp~~~~la~-------g~~Dg~V 280 (927)
++++++ |+++++...++.++.|+..+++.. .++...+ .++++| +..+++ .+.+.+|
T Consensus 201 ---------ia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v 270 (329)
T 3fvz_A 201 ---------LALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQG 270 (329)
T ss_dssp ---------EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCE
T ss_pred ---------EEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEE
Confidence 456788 888888888888888887644332 2455556 899999 444443 3445589
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
++|+..+ ++.+..+.. ..++......|+++|||..+++.+.++.|++|++.+.
T Consensus 271 ~~~~~~~-g~~~~~~~~-----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 271 FVMNFSS-GEIIDVFKP-----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEETTT-CCEEEEECC-----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEEcCC-CeEEEEEcC-----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 9999987 777766632 1126677899999999988888888999999998653
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.17 E-value=5.2e-09 Score=111.57 Aligned_cols=236 Identities=9% Similarity=0.040 Sum_probs=139.0
Q ss_pred eEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEE-cCCccEEEEEec-CcEEEEEEEEec
Q 002405 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTKLIAVVTS-SLYLHIFKVQIT 99 (927)
Q Consensus 23 ~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-spDg~~Lav~t~-dg~l~i~~l~~~ 99 (927)
.-++++++|+++++. .++.|.+|+.+ . ..+..+........+......+++ .++++.+++... ++.|.+|+. .+
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g 109 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG 109 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC
Confidence 347899999988876 47799999985 2 233333211000011234568999 577776666543 788999982 22
Q ss_pred CceeecCCCCCCCccceeeeEEeecccccccccceEE--EeeccCCeEEEE-ecCCcEEEEecCCccccceeecccCCCC
Q 002405 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDS 176 (927)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l~v~-~~dg~i~~~~w~~~~~~~~~~~~~~~~~ 176 (927)
.....+.. .....+. ++.+++. ++++ ..++.|.+++.++.....+
T Consensus 110 ~~~~~~~~----------------------~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~--------- 157 (286)
T 1q7f_A 110 QFVRKFGA----------------------TILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLHKF--------- 157 (286)
T ss_dssp CEEEEECT----------------------TTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEE---------
T ss_pred cEEEEecC----------------------ccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEEEEe---------
Confidence 11101100 0001122 3344454 5554 4567787765332211100
Q ss_pred cccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccc--eec
Q 002405 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KEL 254 (927)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~--~~~ 254 (927)
....+...+.. +++++||+++++...++.+..|+..... .+.
T Consensus 158 --------------------------~~~~~~~~p~~----------i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~ 201 (286)
T 1q7f_A 158 --------------------------GCSKHLEFPNG----------VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG 201 (286)
T ss_dssp --------------------------ECTTTCSSEEE----------EEECSSSEEEEEEGGGTEEEEEETTCCEEEEES
T ss_pred --------------------------CCCCccCCcEE----------EEECCCCCEEEEECCCCEEEEEcCCCCEEEEEc
Confidence 00011112333 4457888888877777888888753221 112
Q ss_pred --CCCCeE-EEEEcCCCcEEEEEecCC-eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 255 --GSGDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 255 --~h~~~v-~v~~sp~~~~la~g~~Dg-~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
++.... .++++|+|+++++...++ .|++|+.+ ++.+..+.... ....+.+++++|||+++++ +.|+.
T Consensus 202 ~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~------~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 202 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKV------KHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESS------CCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccC------CCCcceeEEECCCCcEEEE-CCCCe
Confidence 222344 999999999999988886 99999964 56666665510 2234789999999987777 57899
Q ss_pred EEEEEccC
Q 002405 331 LTVWSVSG 338 (927)
Q Consensus 331 v~vW~~~~ 338 (927)
|++|++..
T Consensus 273 v~v~~~~~ 280 (286)
T 1q7f_A 273 LYIYRYVQ 280 (286)
T ss_dssp EEEEECSC
T ss_pred EEEEEccc
Confidence 99999754
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.17 E-value=4e-09 Score=112.52 Aligned_cols=222 Identities=10% Similarity=0.081 Sum_probs=142.2
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce--e------cCCCCeE-EEEE-cCCCcEEEEEec-CCeEEEEeccCCCcce
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E------LGSGDAV-CASI-APEQQILAVGTR-RGVVELYDLAESASLI 292 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--~------~~h~~~v-~v~~-sp~~~~la~g~~-Dg~V~vwd~~~~~~~~ 292 (927)
++++++|+++++...++.+..|+...... + .++.... .+++ .+++++++++.. ++.|++|+. + +..+
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~-g~~~ 112 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y-GQFV 112 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T-SCEE
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C-CcEE
Confidence 34577888888777777888887542111 1 1233345 8999 578888877754 899999994 3 5555
Q ss_pred EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc-ccccceecceecCCCCCCcccccc
Q 002405 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS 371 (927)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~-~~~~~v~s~~~sp~~~~~~~~l~s 371 (927)
..+.. .+...+.+++++|+|+.+++...++.|.+|+..+ .....+.. .+......++++|++ ..+++
T Consensus 113 ~~~~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g----~l~v~ 180 (286)
T 1q7f_A 113 RKFGA-------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQ----EIFIS 180 (286)
T ss_dssp EEECT-------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSS----EEEEE
T ss_pred EEecC-------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCC----CEEEE
Confidence 54432 1445689999999999888888889999999765 44555532 224567889999987 66665
Q ss_pred cc---eeEEEcCCCceEEEEEcCC--cceE--EEEec-cceeeecccCC-CeeeeeeeecCCeEEEeecCCCCcceEEEe
Q 002405 372 GT---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (927)
Q Consensus 372 g~---~~~~W~~~~~~l~~~~~~~--~~~v--~~~~~-~~~~~s~s~d~-~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (927)
.. .+..|+..+.. +.....+ .... ++++. ++..++...++ .+.+|+. .+ ..+
T Consensus 181 ~~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g-~~~---------------- 241 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG-QLI---------------- 241 (286)
T ss_dssp EGGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS-CEE----------------
T ss_pred ECCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CC-CEE----------------
Confidence 43 78899986543 3333322 1233 44444 66566655554 6777662 11 111
Q ss_pred ecCccccc--CCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 443 NLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 443 ~~~~~~~~--~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
..+.. ....+..++++|+|+.+++ +.++.+ +|+...
T Consensus 242 ---~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 242 ---SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ---EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred ---EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 11111 1223678999999986666 678888 998743
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.16 E-value=3.7e-09 Score=116.08 Aligned_cols=230 Identities=11% Similarity=0.056 Sum_probs=133.4
Q ss_pred CCcEEEEeee---------cCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecC---Ce--EEEEeccCCCcceEE
Q 002405 229 NGQLMSCSVS---------KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR---GV--VELYDLAESASLIRT 294 (927)
Q Consensus 229 dG~~~~~~~~---------d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~D---g~--V~vwd~~~~~~~~~~ 294 (927)
||+.++.... +..+.+|+...++...- .....++|||||+.||.++.+ +. |.+|++.+ ++...
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~- 99 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKK- 99 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEE-
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEE-
Confidence 7776665432 34456666554432110 222388999999999988764 34 66667765 44333
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---------------------------CcEEEEEccCCeeEEEecc
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------------------RGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---------------------------g~v~vW~~~~~~~~~~l~~ 347 (927)
+.. +.+ +.+++|||||+.|+.++.+ ..|.+|++.+++....+..
T Consensus 100 l~~--------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 100 ILE--------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp EEE--------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred EEc--------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence 333 234 9999999999999988743 5689999988876455543
Q ss_pred ccccceecceecCCCCCCccccccc--------c-eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCC-----
Q 002405 348 ISLSSISSPIVKPNQDCKYEPLMSG--------T-SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG----- 412 (927)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg--------~-~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~----- 412 (927)
. .+..+.|+|++ -.+.+. . ...+|..++++...... + ..+..+++ |+.++.++.+.
T Consensus 171 --~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~-~~~~~~spdg~~l~~~~~~~~~~~~ 241 (347)
T 2gop_A 171 --P-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K-VSFYAVDSDGERILLYGKPEKKYMS 241 (347)
T ss_dssp --E-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E-ESEEEEEECSSCEEEEECCSSSCCC
T ss_pred --C-CcccccCCCCe----EEEEEecccccccccccccEEEeCCCceEEecc-C-cceeeECCCCCEEEEEEccccCCcc
Confidence 2 57788899885 111110 1 12333333444333222 2 33444455 66665544332
Q ss_pred -CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEE-EEEccCCCEEEEEeCCceE-EEEccCCcEEeeC
Q 002405 413 -MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH-VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (927)
Q Consensus 413 -~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~-va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~ 489 (927)
...+|.+. +... .....++...+.. ++|+ || .+++++.+|.. +| +.+++.....
T Consensus 242 ~~~~l~~~d-~~~~-------------------~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~ 298 (347)
T 2gop_A 242 EHNKLYIYD-GKEV-------------------MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA 298 (347)
T ss_dssp SSCEEEEEC-SSCE-------------------EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred ccceEEEEC-CCce-------------------EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence 12232222 1110 1112345667886 8999 99 99999999999 99 8766543322
Q ss_pred CccceeeeEEEEEEeeC
Q 002405 490 DITQEQKIQSKGLLWLG 506 (927)
Q Consensus 490 ~~~~e~~~~v~~~~W~~ 506 (927)
.. ...+.++.|.+
T Consensus 299 ~~----~~~v~~~~~s~ 311 (347)
T 2gop_A 299 KG----RHWIMGFDVDE 311 (347)
T ss_dssp CS----SSEEEEEEESS
T ss_pred cC----CCeEEeeeeeC
Confidence 11 13456777776
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.14 E-value=1.2e-09 Score=132.45 Aligned_cols=232 Identities=8% Similarity=-0.068 Sum_probs=143.7
Q ss_pred EEEEeCCcEEEEeee-----cCccceeeeccccee-cCCCCe---EEEEEcCCCcEEEEEecCCe-------------EE
Q 002405 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDA---VCASIAPEQQILAVGTRRGV-------------VE 281 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~~~~w~~~~~~~~-~~h~~~---v~v~~sp~~~~la~g~~Dg~-------------V~ 281 (927)
+.+||||+.++.... +.++++||..+++.. ..+... ..++|+|||+.|+.++.|.. |+
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 445888888775443 356889998776554 222211 37899999999999998876 99
Q ss_pred EEeccCCCcc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC----cEEEEEccCCeeEEEeccccccceec
Q 002405 282 LYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISS 355 (927)
Q Consensus 282 vwd~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg----~v~vW~~~~~~~~~~l~~~~~~~v~s 355 (927)
+|++.+ +.. ...+... .|...+.+++|||||++|+.++.++ .+.+|+..++. ...+..+ ...+..
T Consensus 206 ~~~l~t-~~~~~~lv~~~~------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~ 276 (695)
T 2bkl_A 206 YHTLGT-EPSKDTVVHERT------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG-VGAKYE 276 (695)
T ss_dssp EEETTS-CGGGCEEEECCC------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC-SSCCEE
T ss_pred EEECCC-CchhceEEEecC------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC-CCceEE
Confidence 999987 432 2222221 1556789999999999998887766 66777665543 3334333 233344
Q ss_pred ceecCCCCCCccccc-cc-----ceeEEEcCCCceE---EEEEcCC-cceEEEEec--cceeeecccCCCeeeeeeeecC
Q 002405 356 PIVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRL---YAIEEGS-SERVLIFSF--GKCCLNRGVSGMTYARQVIYGE 423 (927)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg-----~~~~~W~~~~~~l---~~~~~~~-~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~ 423 (927)
+.+ +++ ..++ +. ..+..|+.++++. ......+ ...+..+.+ ++.+++...|+..++|.+....
T Consensus 277 ~~~-~~g----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 277 VHA-WKD----RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEE-ETT----EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred EEe-cCC----cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC
Confidence 444 454 3222 21 2678888866542 2222222 334544444 5566777888888888765322
Q ss_pred CeEEEeecCCCCcceEEEeecCccccc-CCCceEEEEEccCCCEEEEEeC----CceE-EEEccCCcEEee
Q 002405 424 DRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKKWRVF 488 (927)
Q Consensus 424 ~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~spdG~~la~ag~----dg~i-~wd~~s~~w~~f 488 (927)
.. ...+.. +...+..++++|||+.++.... .+.+ +||+.+++.+.+
T Consensus 352 ~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 352 KP-------------------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp CE-------------------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred Ce-------------------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 11 111122 2456777889999988874433 4677 899988776544
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.13 E-value=4e-09 Score=127.13 Aligned_cols=222 Identities=11% Similarity=0.068 Sum_probs=133.1
Q ss_pred cCCCcE-EEEEec-CCeEEEEeccCCC-cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC----------CcE
Q 002405 265 APEQQI-LAVGTR-RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----------RGL 331 (927)
Q Consensus 265 sp~~~~-la~g~~-Dg~V~vwd~~~~~-~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D----------g~v 331 (927)
||||+. ||.++. +..|.+++++..+ .....+... ....|...+.+++|||||+.||.++.| ..|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV---SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC---CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC---ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 499998 887654 4455555543001 333333320 001146678999999999999999887 589
Q ss_pred EEEEccC------CeeEEEec-cccccceecceecCCCCCCccccccc-----------ceeEEEcCC-Cc---eEEEEE
Q 002405 332 TVWSVSG------CRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSG-----------TSMMQWDEY-GY---RLYAIE 389 (927)
Q Consensus 332 ~vW~~~~------~~~~~~l~-~~~~~~v~s~~~sp~~~~~~~~l~sg-----------~~~~~W~~~-~~---~l~~~~ 389 (927)
.+|++.+ +.. ..+. .+ ...+.+++||||+ +.++.. ..+.+|+.+ ++ +.....
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG----~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDG----RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTS----SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEECCCCccccCCce-eEEEecC-CCcccCceECCCC----CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 9999988 543 3444 43 4678889999999 555422 257788887 45 554444
Q ss_pred cCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEE-EeecCCCCcceEEEeecCcccccCCCc--eEEEEEccC
Q 002405 390 EGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL-VVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKD 463 (927)
Q Consensus 390 ~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~--I~~va~spd 463 (927)
.+|...+ ..+++ ++.+++++.++..++|.+.....+.. +... ......-.|. +.+++|+|+
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-------------~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-------------EEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-------------SSBSSCCCCSTTCCSEEECTT
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-------------cccccCccccccCceEeEeCC
Confidence 4444555 44455 77667777777666665432111110 0000 0000000111 567899999
Q ss_pred CCEEEEEeCCceE-EE--EccCCcEEeeCCccceeeeEEEEE-EeeCCEEEEEE
Q 002405 464 GMFLAVAGLHGLI-LY--DIRQKKWRVFGDITQEQKIQSKGL-LWLGKIIVVCN 513 (927)
Q Consensus 464 G~~la~ag~dg~i-~w--d~~s~~w~~f~~~~~e~~~~v~~~-~W~~~~li~~~ 513 (927)
|+++++++. |.. +| |..+++.+.+... +. .+..+ ...++.+++.+
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~--~~--~~~~~~s~~~~~~~~~~ 353 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGELVDAAGP--WT--EWAATLTVSGTRAVGVA 353 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTEEEECCSS--CC--EEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEc-CccEEEEEECCCCcEEEecCC--CC--eEEEEEecCCCEEEEEE
Confidence 999999998 888 88 6667776655332 11 23344 56677666543
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.12 E-value=8.3e-10 Score=123.47 Aligned_cols=148 Identities=9% Similarity=0.067 Sum_probs=96.0
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-E-------------------EEEcCCCcEEEEE-----ec
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-C-------------------ASIAPEQQILAVG-----TR 276 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~-------------------v~~sp~~~~la~g-----~~ 276 (927)
.++|||+.++..+.+..+.+|+...++.. ..+.... . ++++|+++.++.+ ..
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 35788888877777777777776554321 2233322 2 3567888877665 35
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcC------CcEEEEEccCCeeEEEecccc
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS 349 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~D------g~v~vW~~~~~~~~~~l~~~~ 349 (927)
++.|.+||+.+ ++... +.. +...+..++|+| ||+.|+..+.+ ..|.+|++.++... .+..+.
T Consensus 167 ~~~l~~~d~~~-g~~~~-~~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (396)
T 3c5m_A 167 TCRLIKVDIET-GELEV-IHQ--------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA 235 (396)
T ss_dssp CEEEEEEETTT-CCEEE-EEE--------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC
T ss_pred cceEEEEECCC-CcEEe-ecc--------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccC
Confidence 66899999876 54333 334 567789999999 89888777654 35888888766433 332221
Q ss_pred -ccceecceecCCCCCCcccccccc------e--eEEEcCCCceEEE
Q 002405 350 -LSSISSPIVKPNQDCKYEPLMSGT------S--MMQWDEYGYRLYA 387 (927)
Q Consensus 350 -~~~v~s~~~sp~~~~~~~~l~sg~------~--~~~W~~~~~~l~~ 387 (927)
...+..++|+|++ ..++..+ . +.+|+..+++...
T Consensus 236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 236 EGESCTHEFWIPDG----SAMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp TTEEEEEEEECTTS----SCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred CCccccceEECCCC----CEEEEEecCCCCccceEEEEECCCCCeEE
Confidence 2357788999998 5443321 3 8889988776543
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.11 E-value=3.8e-08 Score=109.03 Aligned_cols=282 Identities=12% Similarity=0.037 Sum_probs=160.2
Q ss_pred cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec----------CcEEEEEEEEecCceeecCCC
Q 002405 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGK 108 (927)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~----------dg~l~i~~l~~~~~~~~~~~~ 108 (927)
+++|.+||.. .+..+....- ..++ .++|||||++++++.. ++.|.+||+...+......
T Consensus 30 d~~v~v~D~~-t~~~~~~i~~------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~-- 98 (361)
T 2oiz_A 30 ESRVHVYDYT-NGKFLGMVPT------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS-- 98 (361)
T ss_dssp GCEEEEEETT-TCCEEEEEEC------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE--
T ss_pred cCeEEEEECC-CCeEEEEecC------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE--
Confidence 6699999985 4444433221 1233 8999999999999873 6789999865322111110
Q ss_pred CCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec--CCcEEEEecCCccccceeecccCCCCccccc-cccc
Q 002405 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAAL-SHHF 185 (927)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~--dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~-~~~~ 185 (927)
........+....-.+++++++.++++.. ++.|.+++.+.. .... . ++
T Consensus 99 -------------~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--~~~~------------~~i~-- 149 (361)
T 2oiz_A 99 -------------LPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--DYVE------------DVTA-- 149 (361)
T ss_dssp -------------ECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--EEEE------------EEGG--
T ss_pred -------------cCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC--cEEE------------EEec--
Confidence 00000000111112467889999999875 467877654422 1110 0 00
Q ss_pred CCCCCccccCCCceecccccCCCccEEEEEEccCc-ceEEEEEeCCcEEEEeeec-CccceeeecccceecCCCCeEEEE
Q 002405 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCAS 263 (927)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~d-~~~~~w~~~~~~~~~~h~~~v~v~ 263 (927)
... ...+...|.. ..++++++||++++..... +.+. ........+..+..++.+.
T Consensus 150 ---------------------~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 150 ---------------------AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA-SQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp ---------------------GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE-EEEECCCCSCTTTSCBCSC
T ss_pred ---------------------CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe-eeccccceEcCCCCceEEE
Confidence 000 0011222322 3456678888877665543 3322 1111001111223334445
Q ss_pred EcCCCcEEEEEecCCeEEEEeccCCCc-ceEEEeeecC-CCCCC-CCCCeeEEEECCCCCEEEEEEc-----------CC
Q 002405 264 IAPEQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDW-GYSMD-DTGPVSCIAWTPDNSAFAVGWK-----------SR 329 (927)
Q Consensus 264 ~sp~~~~la~g~~Dg~V~vwd~~~~~~-~~~~l~~~~~-~~~~~-h~~~V~~l~~spdg~~Lasg~~-----------Dg 329 (927)
++|++..++..+.+++|.++|+..... ....+..... ....+ ......-++|+|||+.+.++.. .+
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 578888888888999999999865221 1122221000 00000 0011223789999988877654 34
Q ss_pred cEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc--ceeEEEcCCCc--eEEEEEc
Q 002405 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGY--RLYAIEE 390 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~--~l~~~~~ 390 (927)
.|.+||+.+++.+.++..++ ..+++|+|++ +.+.++ .++.+||..++ +++....
T Consensus 287 ~v~viD~~t~~~v~~i~~~~---p~~ia~spdg----~~l~v~n~~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD---ALSMTIDQQR----NLMLTLDGGNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT---CCEEEEETTT----TEEEEECSSCEEEEECSSSSCEEEEEET
T ss_pred eEEEEECCCCcEEEEEecCC---eeEEEECCCC----CEEEEeCCCeEEEEECCCCcceeeEEec
Confidence 79999999999999998763 8999999998 555433 38889999999 8887753
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.09 E-value=1.5e-08 Score=123.09 Aligned_cols=129 Identities=11% Similarity=0.067 Sum_probs=87.5
Q ss_pred EEEEeCCcEEEEeee-----cCccceeeecc------c----ceecCCCCeEEEEEcCCCcEEEEEecC----CeEEEEe
Q 002405 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIK------I----DKELGSGDAVCASIAPEQQILAVGTRR----GVVELYD 284 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~~~~w~~~~------~----~~~~~h~~~v~v~~sp~~~~la~g~~D----g~V~vwd 284 (927)
+.++|||+.++..+. +..+.+|+..+ + ..+..+.+.+...|+|+|+.|+..+.+ +.|.+|+
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 456889988877765 34566777654 3 223455565644689999988876653 3699999
Q ss_pred ccCCCc--ceEEEeeecCCCCCCCCC--CeeEEEECCCCCEEEEEEcCCc--EEEEEccCCeeEEEeccccccceeccee
Q 002405 285 LAESAS--LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIV 358 (927)
Q Consensus 285 ~~~~~~--~~~~l~~~~~~~~~~h~~--~V~~l~~spdg~~Lasg~~Dg~--v~vW~~~~~~~~~~l~~~~~~~v~s~~~ 358 (927)
+++ +. ....+.. |.. .+..++|++++.+++++..|+. |.+|++.++.....+..+ ...+.++.+
T Consensus 318 ~~~-~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~ 387 (710)
T 2xdw_A 318 FTD-PEESKWKVLVP--------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSG 387 (710)
T ss_dssp TTS-CCGGGCEEEEC--------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEEC
T ss_pred CCC-CCcccceeccC--------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEec
Confidence 876 32 2344444 433 6888999988889999998885 455676556666677655 556667777
Q ss_pred cCCC
Q 002405 359 KPNQ 362 (927)
Q Consensus 359 sp~~ 362 (927)
+|++
T Consensus 388 s~d~ 391 (710)
T 2xdw_A 388 QKKD 391 (710)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7765
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.08 E-value=6.2e-09 Score=111.71 Aligned_cols=227 Identities=9% Similarity=-0.037 Sum_probs=136.5
Q ss_pred EEEEEeCCc-EEEEeeecCccceeeeccc-ceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 223 LFVLYSNGQ-LMSCSVSKKGLKLAEFIKI-DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 223 ~~~~s~dG~-~~~~~~~d~~~~~w~~~~~-~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
..+++++|+ +++++..++.+..|+.... ..+..+...+ +++++|+|+++++...++.|.+||..+ ++.........
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~ 110 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECEET
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeeccC
Confidence 456688888 7777777888888876554 1223455556 999999999998887789999999866 54333222200
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEc-----------------CCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWK-----------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~-----------------Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
......+.+++++|||+++++.+. .+.|..++.. ++. ..+..+ ....+.++++|++
T Consensus 111 ----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~-~~~~~gi~~s~dg 183 (296)
T 3e5z_A 111 ----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD-RVKPNGLAFLPSG 183 (296)
T ss_dssp ----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC-CSSEEEEEECTTS
T ss_pred ----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC-CCCCccEEECCCC
Confidence 001235678999999998887321 2344444444 332 333333 4556789999998
Q ss_pred CCCcccccccc---eeEEEcCC-CceE---EEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 363 DCKYEPLMSGT---SMMQWDEY-GYRL---YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~-~~~l---~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
..+++.. .+..|+.. .+++ ......+.... ++++. |+..++. ++.+..|+.. +..
T Consensus 184 ----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~-------- 248 (296)
T 3e5z_A 184 ----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE-------- 248 (296)
T ss_dssp ----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE--------
T ss_pred ----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE--------
Confidence 5444332 67778765 3333 12221111111 33333 4433333 4445555432 111
Q ss_pred CCCcceEEEeecCcccccCCCceEEEEE-ccCCCEEEEEeCCceEEEEccCCcE
Q 002405 433 DTDELKILHLNLPVSYISQNWPVQHVAA-SKDGMFLAVAGLHGLILYDIRQKKW 485 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~-spdG~~la~ag~dg~i~wd~~s~~w 485 (927)
...+..+.. +.+++| +|||+.|.+++.+|+..++..+++.
T Consensus 249 ------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 249 ------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp ------------EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred ------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 122333444 788999 6999999999998877788777653
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.07 E-value=2.6e-09 Score=129.86 Aligned_cols=228 Identities=8% Similarity=-0.022 Sum_probs=141.1
Q ss_pred EEEEeCCcEEEEeeecC-----ccceeeecccceec---CCCCeEEEEEcCCCcEEEEEecCCe----------------
Q 002405 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKEL---GSGDAVCASIAPEQQILAVGTRRGV---------------- 279 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~-----~~~~w~~~~~~~~~---~h~~~v~v~~sp~~~~la~g~~Dg~---------------- 279 (927)
..+||||+.++.+..++ ++++||..+++... .+.+...++|+|||+.|+.++.|+.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 45689999888776543 68888887665431 1222227899999999999998876
Q ss_pred EEEEeccCCCcce--EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-----CCcEEEEEccC------Ce-eEEEe
Q 002405 280 VELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVSG------CR-LMSTI 345 (927)
Q Consensus 280 V~vwd~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-----Dg~v~vW~~~~------~~-~~~~l 345 (927)
|++|++.+ +... ..+.. ..|...+..++|||||++|+.++. +..+.+||+.+ +. ....+
T Consensus 210 v~~~~l~t-~~~~~~~v~~~------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 210 LYYHVLGT-DQSEDILCAEF------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEEETTS-CGGGCEEEECC------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred EEEEECCC-CcccceEEecc------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999976 4322 22222 114566889999999999998775 56899999976 42 34555
Q ss_pred ccccccceecceecCCCCCCccccc--cc-----ceeEEEcCCCce--EEEEEcCCcc--eEEEEec---cceeeecccC
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLM--SG-----TSMMQWDEYGYR--LYAIEEGSSE--RVLIFSF---GKCCLNRGVS 411 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~--sg-----~~~~~W~~~~~~--l~~~~~~~~~--~v~~~~~---~~~~~s~s~d 411 (927)
..+ ...+.. .++|++ ..+. +. ..+..|+..+++ .+..+..|.. .+..+.+ +..+++...+
T Consensus 283 ~~~-~~~~~~-~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 283 IDN-FEGEYD-YVTNEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp ECS-SSSCEE-EEEEET----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred eCC-CCcEEE-EEeccC----CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 544 233332 466666 3222 11 157778877653 1222223322 3433332 4456666777
Q ss_pred CCeeeeeeee--cCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeC----CceE-EEEccCCc
Q 002405 412 GMTYARQVIY--GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKK 484 (927)
Q Consensus 412 ~~~~~w~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~----dg~i-~wd~~s~~ 484 (927)
+..++|.+.. +.. ...+..+.+.+..++++|+|+.++.... .+.+ .||+.+++
T Consensus 357 g~~~l~~~~~~~g~~--------------------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGAL--------------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCE--------------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCE--------------------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7666555432 221 1122234567888999999987774433 3567 88988776
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.06 E-value=6.5e-09 Score=114.11 Aligned_cols=216 Identities=9% Similarity=0.071 Sum_probs=130.7
Q ss_pred EEEEeCCcEEEEeeec---Cc--cceeeecccce--ecCCCCeE-EEEEcCCCcEEEEEecC------------------
Q 002405 224 FVLYSNGQLMSCSVSK---KG--LKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGTRR------------------ 277 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~--~~~w~~~~~~~--~~~h~~~v-~v~~sp~~~~la~g~~D------------------ 277 (927)
..++|||+.+++.+.+ +. +.+|+...++. ...+.. + .++|+|+|+.||.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeec
Confidence 4568899887776654 23 44555544332 222223 6 99999999999988753
Q ss_pred ---------CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-------cEEEEEccCCee
Q 002405 278 ---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------GLTVWSVSGCRL 341 (927)
Q Consensus 278 ---------g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg-------~v~vW~~~~~~~ 341 (927)
..|.+|++.+ ++.+..+.. . .+..++||||| .++++..++ ...||.+.+++.
T Consensus 143 g~~~~~~~~~~l~~~d~~~-~~~~~~l~~---------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTES-EEVIEEFEK---------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp -------CEEEEEEEETTT-TEEEEEEEE---------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred CcccccCccceEEEEECCC-CeEEeeecC---------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 5788899876 544344443 1 57889999999 777776652 456665555443
Q ss_pred EEEeccccccceecceecCCCCCCccccccc-----------ceeEEEcCCCceEEEEEcCCcceEEE-Eec-cceeeec
Q 002405 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSG-----------TSMMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLNR 408 (927)
Q Consensus 342 ~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-----------~~~~~W~~~~~~l~~~~~~~~~~v~~-~~~-~~~~~s~ 408 (927)
..+..+ ..+.++ +|++ ..++.. ..+.+|+ +++......++...+.. +.+ ...++++
T Consensus 211 -~~l~~~--~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~ 279 (347)
T 2gop_A 211 -EKMFEK--VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTL 279 (347)
T ss_dssp -EEEEEE--ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEE
T ss_pred -EEeccC--cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEE
Confidence 333322 233333 7887 443321 1455666 45544444455555532 333 3366677
Q ss_pred ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE--EEEccCCcEE
Q 002405 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR 486 (927)
Q Consensus 409 s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i--~wd~~s~~w~ 486 (927)
+.++..++| +. ... +.....+...|.+++|+| +.+++++.++.. +|.+. ++.+
T Consensus 280 ~~~~~~~l~-~~-~g~--------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~ 334 (347)
T 2gop_A 280 FEEGSVNLY-IW-DGE--------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEK 334 (347)
T ss_dssp EETTEEEEE-EE-SSS--------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEE
T ss_pred ecCCcEEEE-Ec-CCc--------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEE
Confidence 788888888 76 222 122334466789999999 677777777654 77776 5544
Q ss_pred ee
Q 002405 487 VF 488 (927)
Q Consensus 487 ~f 488 (927)
.+
T Consensus 335 ~l 336 (347)
T 2gop_A 335 QL 336 (347)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.03 E-value=1.3e-08 Score=111.08 Aligned_cols=231 Identities=9% Similarity=0.017 Sum_probs=139.7
Q ss_pred EeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~ 305 (927)
++++..++....+.+++.|.......+.++.... +++|+|++++++++..++.|.+||.++ +........
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-------- 84 (333)
T 2dg1_A 14 SGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-------- 84 (333)
T ss_dssp CGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC--------
T ss_pred cCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC--------
Confidence 4555544444555666666333322334455555 999999999888999999999999876 544333323
Q ss_pred CCCCeeEEEECCCCCEEEEEEcC----CcEEEEEccCCeeEEEecc-ccccceecceecCCCCCCcccccccc-------
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT------- 373 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~D----g~v~vW~~~~~~~~~~l~~-~~~~~v~s~~~sp~~~~~~~~l~sg~------- 373 (927)
+...+.+++|+|||++++++..+ +.|.+||..++.....+.. .....+..++++|++ ..+++..
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG----GFYFTDFRGYSTNP 160 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS----CEEEEECCCBTTBC
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC----CEEEEeccccccCC
Confidence 56789999999999988887776 6899999988765433332 113467888999987 5555432
Q ss_pred --eeEEEcCCCceEEEEEcCCcceE--EEEec-ccee-eecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcc
Q 002405 374 --SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (927)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~-~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (927)
.+..++++++++...... .... +++++ ++.+ ++.+.++.+.+|+.......+... . ......
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~----------~-~~~~~~ 228 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF----------G-ATIPYY 228 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE----------E-EEEEEE
T ss_pred CceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc----------c-ceEEEe
Confidence 344555555444332211 1112 44455 5533 444456667776653211111000 0 000111
Q ss_pred cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002405 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (927)
Q Consensus 448 ~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~ 483 (927)
+.++ ..+..++++++|+..++...++.+ +||....
T Consensus 229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCC
Confidence 1122 356789999999988877777777 9987543
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.00 E-value=1.9e-08 Score=106.00 Aligned_cols=224 Identities=6% Similarity=-0.064 Sum_probs=133.5
Q ss_pred EEEEeCCcEEE-EeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeee
Q 002405 224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 224 ~~~s~dG~~~~-~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
+++++||++++ +...++.+..|+....... ..+.... +++++++++++++.. ++.|.+||.+. . ....+..
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~-~-~~~~~~~- 104 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS-N-NQTVLPF- 104 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-S-CCEECCC-
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-c-eEeeeec-
Confidence 34567888776 5456666777765432221 1222334 899999999777766 88999999764 2 2222221
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---ee
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~ 375 (927)
.....+.+++++|+|+.+++...++.|.+|+..+.......... ......++++|++ ..+++.. .+
T Consensus 105 ------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g----~l~v~~~~~~~i 173 (270)
T 1rwi_B 105 ------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSG----NVYVTDTDNNRV 173 (270)
T ss_dssp ------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTC----CEEEEEGGGTEE
T ss_pred ------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeCCC----CEEEEECCCCEE
Confidence 12356899999999998888777889999986554332221111 3456778888877 5555432 77
Q ss_pred EEEcCCCceEEEEEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC
Q 002405 376 MQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (927)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (927)
..|+..+.........+.... ++++. +...++...++.+..|+...... ......+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~ 233 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--------------------TVLPFTGL 233 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------------EECCCCSC
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------------eeeccCCC
Confidence 888887765544322221223 33333 44444444445555544321111 00011222
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002405 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (927)
Q Consensus 453 ~~I~~va~spdG~~la~ag~dg~i-~wd~~s 482 (927)
..+..++++|+|+.+++...++.+ +|+...
T Consensus 234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 457889999999988888888988 888754
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.99 E-value=2.9e-08 Score=120.26 Aligned_cols=146 Identities=10% Similarity=-0.028 Sum_probs=89.5
Q ss_pred EEEEeCCcEEEEeeecC----ccceeeeccc--ceecCCCCeE-EEEEcCCCcEEEEEec----CCeEEEEeccCCCcc-
Q 002405 224 FVLYSNGQLMSCSVSKK----GLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTR----RGVVELYDLAESASL- 291 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~----~~~~w~~~~~--~~~~~h~~~v-~v~~sp~~~~la~g~~----Dg~V~vwd~~~~~~~- 291 (927)
+.++|||+.++..+.++ .+.+++...+ ..+..+.+.. ...+ |+++ ++..+. ++.|.+|++++ +..
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~-~~~~ 308 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK-PARA 308 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB-CSGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC-CCcc
Confidence 44688888777766554 3444443222 1223344444 5555 6777 444443 58999999876 432
Q ss_pred -eEEEeeecCCCCCCC-CCCeeEEEECCCCCEEEEEEcCCcEEEEEcc-CCeeEEEeccccccceecceecCCCCCCccc
Q 002405 292 -IRTVSLYDWGYSMDD-TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (927)
Q Consensus 292 -~~~l~~~~~~~~~~h-~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~ 368 (927)
...+-. .+ ...+..++|+ ++..++++..|+..+||.+. .+.....+..++...+.++.++|++ ..
T Consensus 309 ~~~~l~~-------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~----~~ 376 (695)
T 2bkl_A 309 SWKEIVP-------EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDL----DD 376 (695)
T ss_dssp GCEEEEC-------CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTC----SE
T ss_pred CCeEEec-------CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCC----CE
Confidence 233333 02 4568889998 78899999999999988764 3445555655445667778888876 33
Q ss_pred cc----cc---ceeEEEcCCCce
Q 002405 369 LM----SG---TSMMQWDEYGYR 384 (927)
Q Consensus 369 l~----sg---~~~~~W~~~~~~ 384 (927)
++ +. .++..|+..+++
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEcCCCCCCEEEEEECCCCc
Confidence 32 11 156677776654
No 186
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.99 E-value=7.7e-09 Score=126.37 Aligned_cols=233 Identities=9% Similarity=-0.035 Sum_probs=144.1
Q ss_pred EEEEeCCcEEEEeeec-----CccceeeecccceecCCC--CeE-EEEEcCCCcEEEEEecCCe--------------EE
Q 002405 224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDKELGSG--DAV-CASIAPEQQILAVGTRRGV--------------VE 281 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d-----~~~~~w~~~~~~~~~~h~--~~v-~v~~sp~~~~la~g~~Dg~--------------V~ 281 (927)
..+||||+.++.++.+ .++++||..+++....+. ..+ .++|+|| +.|+.++.|+. |.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 4568899988877654 357888887765442211 112 6789999 99999887664 88
Q ss_pred EEeccCCCcc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-----cEEEEEccCC--eeEEEeccccccc
Q 002405 282 LYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGC--RLMSTIRQISLSS 352 (927)
Q Consensus 282 vwd~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg-----~v~vW~~~~~--~~~~~l~~~~~~~ 352 (927)
+|++.+ +.. ...+.. ..+...+..+.|||||++|+..+.++ .+.+||+.++ .....+..+ ...
T Consensus 247 ~~~lgt-~~~~~~lv~~~------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~ 318 (741)
T 1yr2_A 247 LHRLGT-PQSADQPVFAT------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKA 318 (741)
T ss_dssp EEETTS-CGGGCEEEECC------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSS
T ss_pred EEECCC-CchhCEEEecc------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCc
Confidence 999876 332 222222 11344688999999999998887654 7999999876 314455443 223
Q ss_pred eecceecCCCCCCccccccc-------ceeEEEcCCCc--eEEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeee
Q 002405 353 ISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYGY--RLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg-------~~~~~W~~~~~--~l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~ 421 (927)
+.... +|++ ..++.. ..+..|+.+++ +.......+...+..+.+ ++.+++...|+..++|.+..
T Consensus 319 ~~~~~-~~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 319 QWDFV-DGVG----DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp CEEEE-EEET----TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEET
T ss_pred eEEEE-eccC----CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 33332 3555 322211 15778888764 333344444444544444 45567777788877777652
Q ss_pred cCCeEEEeecCCCCcceEEEeecCcccc-cCCCceEEEEEccCCCEEEEEe----CCceE-EEEccCCcEEeeC
Q 002405 422 GEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG----LHGLI-LYDIRQKKWRVFG 489 (927)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~spdG~~la~ag----~dg~i-~wd~~s~~w~~f~ 489 (927)
.... ...+. .+...+..++++|||+.++... ..+.+ .||+.+++.+.+.
T Consensus 394 ~g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 394 DGKP-------------------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp TSCE-------------------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS
T ss_pred CCCc-------------------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 2211 11111 2345688899999998776332 34677 8999888766654
No 187
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.94 E-value=6.7e-08 Score=117.98 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=92.2
Q ss_pred EEEEeCCcEEEEeeecC-----ccceeeeccc--c---eecCCCCeE-EEEEcCCCcEEEEEecC----CeEEEEeccCC
Q 002405 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKI--D---KELGSGDAV-CASIAPEQQILAVGTRR----GVVELYDLAES 288 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~-----~~~~w~~~~~--~---~~~~h~~~v-~v~~sp~~~~la~g~~D----g~V~vwd~~~~ 288 (927)
+.++|||+.++..+.++ .+.+|+..++ + .+..+.+.. .. ++|+|+.|+..+.+ +.|.+|++++.
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 45688998777776543 5667776543 2 234444444 33 45999999888764 45999998752
Q ss_pred CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc-CCeeEEEeccccccceecceecCCCCCCcc
Q 002405 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (927)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~ 367 (927)
......+-. .+...+.+++|+ ++..+++...|+..+||.+. .+.....+..++...+..+.++|++ .
T Consensus 352 ~~~~~~l~~-------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~----~ 419 (741)
T 1yr2_A 352 TPRFDTVVP-------ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD----R 419 (741)
T ss_dssp SCEEEEEEC-------CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC----S
T ss_pred ccccEEEec-------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC----C
Confidence 122233322 145567788888 67788889999988888664 3445555654334567777788776 3
Q ss_pred ccc----cc---ceeEEEcCCCce
Q 002405 368 PLM----SG---TSMMQWDEYGYR 384 (927)
Q Consensus 368 ~l~----sg---~~~~~W~~~~~~ 384 (927)
.+. +. .++..|+..+++
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 222 11 156677766655
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.91 E-value=1.3e-07 Score=100.35 Aligned_cols=213 Identities=9% Similarity=-0.023 Sum_probs=132.1
Q ss_pred EeCCcEEEEeeecCccceeeeccccee---cCCC-CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG-DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~-~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
+..|+++++++.++.+.+||..+++.. ..+. ..+ +++++|+|++++ +.++.|..||. + ++.+..+...
T Consensus 2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~~--- 74 (276)
T 3no2_A 2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAAP--- 74 (276)
T ss_dssp -CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEECC---
T ss_pred CCCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcCC---
Confidence 355778888888888888887666543 2232 245 899999999999 45788999998 5 7777777651
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEccCCeeEEEeccc-----cccceecceecCCCCCCcccccccc--
Q 002405 302 YSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT-- 373 (927)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~-Dg~v~vW~~~~~~~~~~l~~~-----~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (927)
+...+.++.+.|||+.+++.+. ++.+..++.. ++.+.++... .......++..+++ ..+++..
T Consensus 75 ----~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G----~~lv~~~~~ 145 (276)
T 3no2_A 75 ----AGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKG----NYLVPLFAT 145 (276)
T ss_dssp ----TTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTS----CEEEEETTT
T ss_pred ----CCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCC----CEEEEecCC
Confidence 2346889999999999999887 7778777864 4555544311 01223445566676 6665543
Q ss_pred -eeEEEcCCCceEEEEEcCCcce-EEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCccccc
Q 002405 374 -SMMQWDEYGYRLYAIEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (927)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~-v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (927)
.+..|++++ +++.....+... -..... ++.+++++.++.+..++..+++ ..|+...-. ..+
T Consensus 146 ~~v~~~d~~G-~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-------------~~w~~~~~~--~~~ 209 (276)
T 3no2_A 146 SEVREIAPNG-QLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR-------------IVRRVNAND--IEG 209 (276)
T ss_dssp TEEEEECTTS-CEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC-------------EEEEEEGGG--SBS
T ss_pred CEEEEECCCC-CEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-------------EEEEecCCC--CCC
Confidence 789999984 444444332111 122222 6666666655555555433222 345443110 000
Q ss_pred -CCCceEEEEEccCCCEEEEEe
Q 002405 451 -QNWPVQHVAASKDGMFLAVAG 471 (927)
Q Consensus 451 -~~~~I~~va~spdG~~la~ag 471 (927)
.-..+..++..++|..+++..
T Consensus 210 ~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 210 VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCSEEEEEEECTTSCEEEEEE
T ss_pred ccccccccceEcCCCCEEEEec
Confidence 123467788899999888873
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.90 E-value=1.4e-07 Score=102.68 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=128.9
Q ss_pred EEEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecC----CeEEEEeccCCCcceEE
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR----GVVELYDLAESASLIRT 294 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~D----g~V~vwd~~~~~~~~~~ 294 (927)
.+++++||++++++..++.+..|+..+++.. ..+...+ +++++|++++++++..+ +.|.+||.++ +.....
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~ 127 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDI 127 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEE
Confidence 3556789998888777888888886654322 2445566 99999999998887777 7899999875 443323
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc------CCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcc-
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE- 367 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~------Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~- 367 (927)
+... .+...+.+++++|||+.+++... .+.|..++..+++... +... ......++++|++ .
T Consensus 128 ~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-~~~~~~i~~~~dg----~~ 195 (333)
T 2dg1_A 128 IEDL------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN-ISVANGIALSTDE----KV 195 (333)
T ss_dssp ECSS------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE-ESSEEEEEECTTS----SE
T ss_pred EccC------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC-CCcccceEECCCC----CE
Confidence 3210 13457899999999998887654 2455566655544332 2222 3446778899987 4
Q ss_pred ccccc---ceeEEEcCCC-ceEEE--------EEcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecC
Q 002405 368 PLMSG---TSMMQWDEYG-YRLYA--------IEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (927)
Q Consensus 368 ~l~sg---~~~~~W~~~~-~~l~~--------~~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 432 (927)
.+++. ..+..|+..+ +..+. ...++ ... ++++. ++..++...++.+.+|+. .+ .
T Consensus 196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g-~-------- 264 (333)
T 2dg1_A 196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG-Y-------- 264 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TS-C--------
T ss_pred EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CC-C--------
Confidence 32322 2677788742 22111 11111 112 22332 333333333344444432 11 1
Q ss_pred CCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCc
Q 002405 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (927)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg 474 (927)
.......+....+|...+.+++|+|||+.|.+++.+|
T Consensus 265 -----~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 265 -----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp -----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred -----EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 1111122222123333578899999998888777764
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.90 E-value=1.5e-07 Score=103.33 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=138.7
Q ss_pred EEEEEecCeEEEEEc-----------cCeEEEeecCCceeEEEEEeeChHhhhhcc-cccEEEEcCCccEEEEEec--Cc
Q 002405 24 IIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTS--SL 89 (927)
Q Consensus 24 iv~fs~dg~lla~~~-----------~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wspDg~~Lav~t~--dg 89 (927)
-+++||||+++.++. ++.|.+||.. ....+....-....-...| .-..++|+|||+++.++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 499999999766553 4679999996 6555555432110000011 2347999999999999874 68
Q ss_pred EEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceee
Q 002405 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (927)
Q Consensus 90 ~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~ 169 (927)
.|.++|+...+....+ ...+. ..+ .......++..+.||.+..+...........
T Consensus 161 ~VsVID~~t~~vv~tI---------------------~v~g~-~~~--~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~- 215 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRML---------------------DVPDC-YHI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT- 215 (386)
T ss_dssp EEEEEETTTTEEEEEE---------------------ECCSE-EEE--EEEETTEEEEEETTSCEEEEECCSSSCCEEE-
T ss_pred eEEEEECCCCcEEEEE---------------------ECCCc-cee--ecCCCceeEEECCCCCEEEEECCCCCeEEEe-
Confidence 8999998643321111 01110 000 0112234445555665555443321111000
Q ss_pred cccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc---eee
Q 002405 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAE 246 (927)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~---~w~ 246 (927)
+...+..+. ..... ...|.+.....++.+.+|++++.......++ -|+
T Consensus 216 ----------~~~~~~~~~-------------~~~~~------~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 216 ----------HTEVFHPED-------------EFLIN------HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp ----------ECCCCSCTT-------------SCBCS------CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred ----------ecceecccc-------------ccccc------cceeEcCCCcEEEEeCCCEEEEEECCCCcceeeccee
Confidence 000000000 00000 0123222222233444555555443333322 222
Q ss_pred eccc-ceecC--CCCeEEEEEcCCCcEEEEEec----------CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEE
Q 002405 247 FIKI-DKELG--SGDAVCASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (927)
Q Consensus 247 ~~~~-~~~~~--h~~~v~v~~sp~~~~la~g~~----------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (927)
.... ....+ ..+.-.++++|+++.+.+... .++|-+.|+.+ .+.++++.. ..++..|
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v---------g~~~~~l 336 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---------GHEIDSI 336 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEECEE
T ss_pred ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC---------CCCcceE
Confidence 1100 00000 011114777999888777643 25789999988 777777766 2467899
Q ss_pred EECCCCC-EEEEE-EcCCcEEEEEccCCeeEEEeccc
Q 002405 314 AWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 314 ~~spdg~-~Lasg-~~Dg~v~vW~~~~~~~~~~l~~~ 348 (927)
++||||+ +|.++ +.+++|.|+|..+++.+.++...
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 9999997 66665 45899999999999999888753
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.88 E-value=7.9e-07 Score=98.62 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=59.8
Q ss_pred EEEEcCCCcEEEEEec----------CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEE-cC
Q 002405 261 CASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KS 328 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~----------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~-~D 328 (927)
.++++|+++.+.++.. ++.|.++|..+ .+.+.++.. .+...+++|+|||+ .++++. .+
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---------g~~p~~i~~s~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---------GHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC---------CCCcCeEEECCCCCeEEEEEcCCC
Confidence 4789999887777553 35899999987 667777754 33578999999999 788877 58
Q ss_pred CcEEEEEccCCeeEEEe
Q 002405 329 RGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l 345 (927)
+.|.|+|+.+++.+.++
T Consensus 341 ~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEEEECCCCCEEeee
Confidence 99999999998887774
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.79 E-value=2.1e-07 Score=98.70 Aligned_cols=181 Identities=12% Similarity=0.075 Sum_probs=123.6
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCC-CCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE
Q 002405 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 266 p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~-~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
..+++|++++.|+.|.+||.++ ++.+.++.. +. ..+.+++++|||+.++ +.++.|..||. +++.+.+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~--------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT-KEIVWEYPL--------EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT-TEEEEEEEC--------CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCC-CeEEEEeCC--------CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 3568999999999999999877 777777766 44 4689999999999998 34678999999 6677777
Q ss_pred eccccccceecceecCCCCCCcccccccc----eeEEEcCCCceEEEEEcC-----CcceE--EEEec-cceeeecccCC
Q 002405 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSERV--LIFSF-GKCCLNRGVSG 412 (927)
Q Consensus 345 l~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~-----~~~~v--~~~~~-~~~~~s~s~d~ 412 (927)
+..+....+.++.+.|++ ..+++.. .+..+++++..++..... +.... ..... ++.+++...++
T Consensus 71 ~~~~~~~~~~~~~~~~dG----~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDG----NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EECCTTCEEEEEEECTTS----CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EcCCCCccccccEECCCC----CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 775423467788888888 6665432 566667755444443211 10111 22233 66777776677
Q ss_pred CeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002405 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~ 484 (927)
.+..++.. ++ ..|+... . ....++.+.++|+.+++++.++.+ .+|..+|+
T Consensus 147 ~v~~~d~~-G~-------------~~w~~~~-------~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 147 EVREIAPN-GQ-------------LLNSVKL-------S-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EEEEECTT-SC-------------EEEEEEC-------S-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EEEEECCC-CC-------------EEEEEEC-------C-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 77766643 33 2343211 1 234457889999999998888878 99998775
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.79 E-value=3.5e-07 Score=97.86 Aligned_cols=191 Identities=12% Similarity=0.030 Sum_probs=122.6
Q ss_pred CeE-EEEEcCCCc-EEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 258 DAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 258 ~~v-~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
... +++|+|+++ +++++..++.|..|+.+. + ...+.. +.+.+.+++|+|||+++++...++.|.+||
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 344 899999998 888999999999999876 3 555655 677899999999999888877778999999
Q ss_pred ccCCeeEEEecc---ccccceecceecCCCCCCcccccc----cc----------------eeEEEcCCCceEEEEEcCC
Q 002405 336 VSGCRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMS----GT----------------SMMQWDEYGYRLYAIEEGS 392 (927)
Q Consensus 336 ~~~~~~~~~l~~---~~~~~v~s~~~sp~~~~~~~~l~s----g~----------------~~~~W~~~~~~l~~~~~~~ 392 (927)
..+++....... .....++.++++|++ ..+++ |. .+..++++ +++.... .+
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI-RD 170 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE-CC
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee-cC
Confidence 966654332221 112346778899988 66664 21 34444544 3333222 22
Q ss_pred cceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEE
Q 002405 393 SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV 469 (927)
Q Consensus 393 ~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ 469 (927)
.... +++++ ++.+++.+.++.+..|++..... +. .. ...+..+...+..++++++|+..++
T Consensus 171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-~~------------~~---~~~~~~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-TE------------YQ---GVHFTVEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC-EE------------EE---EEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc-Cc------------CC---CeEeeCCCCCCCeEEECCCCCEEEE
Confidence 2222 55566 66666667777787777651111 00 00 0001113344567999999996665
Q ss_pred EeCCceE-EEEccCC
Q 002405 470 AGLHGLI-LYDIRQK 483 (927)
Q Consensus 470 ag~dg~i-~wd~~s~ 483 (927)
. ++.+ +||....
T Consensus 235 ~--~~~v~~~~~~g~ 247 (296)
T 3e5z_A 235 A--GDGVHVLTPDGD 247 (296)
T ss_dssp E--TTEEEEECTTSC
T ss_pred c--CCeEEEECCCCC
Confidence 5 5556 9997643
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.78 E-value=3.1e-07 Score=96.51 Aligned_cols=128 Identities=7% Similarity=0.053 Sum_probs=81.1
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee---cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h-~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
+++++|+++++...++.+..++..+.... ... ..+.+++++|++++.++...++.|.+|+.+. ..... ...
T Consensus 114 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~-~~~--- 188 (270)
T 1rwi_B 114 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVV-LPF--- 188 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEE-CCC---
T ss_pred EECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEe-ecc---
Confidence 34667777776666666666654332211 122 2333899999999888888889999999865 32211 111
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+...+.+++++|+|+..++...++.|.+|+..+..... ....+...+.+++++|++
T Consensus 189 ----~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 189 ----TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp ----SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTC
T ss_pred ----cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCC
Confidence 133567899999999888887778999999987754322 211112345555565554
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.78 E-value=3.6e-06 Score=89.53 Aligned_cols=227 Identities=8% Similarity=0.004 Sum_probs=132.2
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+++++|+++++...++.+..++.. ++.. ..+...+ ++++++++.+.++...++.|..|+.+ +. ...+...
T Consensus 21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~- 95 (299)
T 2z2n_A 21 TVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GI-IKEYTLP- 95 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEECS-
T ss_pred EECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--Cc-EEEEeCC-
Confidence 346777777766556666666654 2211 1233445 99999999988887778999999875 22 2333320
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc---ceeE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMM 376 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~~~ 376 (927)
.....+.++++.|||+.+++...++.+.+|+..+......+... ...+..+++++++ ..+++. ..+.
T Consensus 96 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 96 -----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNK-GSYPSFITLGSDN----ALWFTENQNNAIG 165 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEECTTS----CEEEEETTTTEEE
T ss_pred -----CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCC-CCCCceEEEcCCC----CEEEEeCCCCEEE
Confidence 13456899999999998888777889999998433222222222 3457778888887 555543 2677
Q ss_pred EEcCCCceEEEE-EcCCcceE--EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCC
Q 002405 377 QWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (927)
Q Consensus 377 ~W~~~~~~l~~~-~~~~~~~v--~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (927)
.|+. ++++... ...+...+ ++++. ++..++...++.+..++. .+. ......+ .+.
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------------~~~~~~~----~~~ 224 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------------ITEFKIP----TPN 224 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---------------EEEEECS----STT
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc---------------EEEEECC----CCC
Confidence 7777 4444332 22222223 22222 333333323333443332 111 1111111 234
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEee
Q 002405 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (927)
Q Consensus 453 ~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f 488 (927)
..+..++++++|+..++...++.+ .||. +++...+
T Consensus 225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEE
T ss_pred CCceeEEECCCCCEEEeccCCceEEEECC-CCceEEE
Confidence 567899999999966665456666 9998 4554444
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.76 E-value=1.8e-06 Score=100.99 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=81.3
Q ss_pred eCCcEEEEeeecCccceeeeccccee--cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEecc--CCCcceEEEeeecCCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA--ESASLIRTVSLYDWGY 302 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~--~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~--~~~~~~~~l~~~~~~~ 302 (927)
+++.++++...++++.++|..+.+.. ....... .++|||||+++.+++.|+.|.+||+. + .+.+.++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~----- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKI----- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEEC-----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEec-----
Confidence 44556677777788888887765433 1223344 89999999999999999999999995 4 555665554
Q ss_pred CCCCCCCeeEEEEC----CCCCEEEEEEc-CCcEEEEEccCCeeEEEec
Q 002405 303 SMDDTGPVSCIAWT----PDNSAFAVGWK-SRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 303 ~~~h~~~V~~l~~s----pdg~~Lasg~~-Dg~v~vW~~~~~~~~~~l~ 346 (927)
..+ ...++|| |||++++++.. ++++.|+|..+.+.+.++.
T Consensus 239 ---G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 239 ---GSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp ---CSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred ---CCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 233 4789999 79998887765 4899999998888777654
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.73 E-value=2.4e-07 Score=102.22 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=72.3
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccc-------------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~-------------~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~ 289 (927)
+++++++.++++++.++ +.+|+..... ....+.+ + .++| ++++|++| .+|.|++||+.+ .
T Consensus 43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s-l 116 (388)
T 1xip_A 43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE-L 116 (388)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS-T
T ss_pred EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh-h
Confidence 44566666666655543 3335433221 1233556 6 9999 99999999 899999999987 4
Q ss_pred cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeE
Q 002405 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (927)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~ 342 (927)
........ |..+|.++.+.+.. +|++..||++.+||+.++...
T Consensus 117 ~~~~~~~~--------~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 117 SEFRTVTS--------FEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp TCEEEEEE--------CSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE
T ss_pred hccCccce--------eecceeeEEecCCC--EEEEECCCCEEEEEccCCccc
Confidence 34444555 77889998887653 999999999999999876543
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.72 E-value=2.1e-06 Score=93.55 Aligned_cols=224 Identities=6% Similarity=-0.016 Sum_probs=138.7
Q ss_pred eCCcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 228 ~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
.+++++++...++.+.++|..+.+.. .....+..++++|++++.++...++.|.+||..+ ++....+.... ..
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~---~~ 127 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPD---MD 127 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTT---CC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCC---cc
Confidence 45677777777788888887766542 3334455899999997666665899999999987 66555555411 00
Q ss_pred CCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc-----------
Q 002405 305 DDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----------- 372 (927)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~-~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg----------- 372 (927)
++......+++ .+++.+++.+ .+++|.++|..+++...++... .....++++|++ ..+++.
T Consensus 128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG----~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 128 MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN----KMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS----EEEEEBCCBCTTCSSCB
T ss_pred ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC----CEEEEECCCccCCcccc
Confidence 11124456777 4555555554 4889999999998888777643 235678888887 444332
Q ss_pred --ceeEEEcCCCceEEEEEcC---CcceEEEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCc
Q 002405 373 --TSMMQWDEYGYRLYAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (927)
Q Consensus 373 --~~~~~W~~~~~~l~~~~~~---~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (927)
..+..+++.++++.....- ....-+++++ ++.+..++. ++..+|...+.. ...
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~-------------------~~~ 259 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV-------------------PVR 259 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC-------------------CSS
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce-------------------eee
Confidence 2577888888877655432 1122256665 565544433 555555433221 001
Q ss_pred cccc-CCCceEEEEEccCCCEEEEE-----eCCceE-EEEccCCc
Q 002405 447 SYIS-QNWPVQHVAASKDGMFLAVA-----GLHGLI-LYDIRQKK 484 (927)
Q Consensus 447 ~~~~-~~~~I~~va~spdG~~la~a-----g~dg~i-~wd~~s~~ 484 (927)
.+.. +......++++|++..|.++ ..++.+ +||.. ++
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 1111 13457889999955545444 467888 99987 54
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.70 E-value=1.9e-05 Score=83.86 Aligned_cols=267 Identities=8% Similarity=0.038 Sum_probs=144.5
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
...+ +++++++|++.++...++.|.+||.. +. ...+... .+...+.+++++|+|+..++...++.|..|+
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~--~~-~~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD--GK-ITEYPLP------TPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT--CC-EEEEECS------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC--CC-eEEecCC------cccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 3445 99999999988877778999999976 22 2333221 1346789999999999888877788999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCccccccc---ceeEEEcCCCceEEEEE-cCCcceEE--EEec-cceeeec
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAIE-EGSSERVL--IFSF-GKCCLNR 408 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~~~~W~~~~~~l~~~~-~~~~~~v~--~~~~-~~~~~s~ 408 (927)
..+......+... ...+..+++++++ ..+++. ..+..|++ +++..... ..+...+. +++. ++..++.
T Consensus 85 ~~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 85 KKGIIKEYTLPNP-DSAPYGITEGPNG----DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp TTSCEEEEECSST-TCCEEEEEECTTS----CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred CCCcEEEEeCCCc-CCCceeeEECCCC----CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence 8744222222222 3457788888877 555543 26777887 33332221 21222222 2222 3333333
Q ss_pred ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEe
Q 002405 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (927)
Q Consensus 409 s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~ 487 (927)
..++.+..++. .+.. .....+ .+...+..++++++|+..++...++.+ .||. +++...
T Consensus 159 ~~~~~i~~~~~-~g~~---------------~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 159 NQNNAIGRITE-SGDI---------------TEFKIP----TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE 217 (299)
T ss_dssp TTTTEEEEECT-TCCE---------------EEEECS----STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred CCCCEEEEEcC-CCcE---------------EEeeCC----CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence 33333333332 1110 111111 223457889999999977766666777 9998 777665
Q ss_pred eCCccceeeeEEEEEEeeC-CEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecC---CccEEEEccCCEEEEEEcCC
Q 002405 488 FGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL---AKPIVMDVYEDYILVTYRPF 563 (927)
Q Consensus 488 f~~~~~e~~~~v~~~~W~~-~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~v~~~d~ 563 (927)
+...... ..+.++.... ..+.++.. ....|..|+.+ ..+ ....++ ..+..+...++.|.+++.++
T Consensus 218 ~~~~~~~--~~~~~i~~~~~g~l~v~~~----~~~~i~~~d~~----g~~-~~~~~~~~~~~~~~i~~~~g~l~v~~~~~ 286 (299)
T 2z2n_A 218 FKIPTPN--ARPHAITAGAGIDLWFTEW----GANKIGRLTSN----NII-EEYPIQIKSAEPHGICFDGETIWFAMECD 286 (299)
T ss_dssp EECSSTT--CCEEEEEECSTTCEEEEET----TTTEEEEEETT----TEE-EEEECSSSSCCEEEEEECSSCEEEEETTT
T ss_pred EECCCCC--CCceeEEECCCCCEEEecc----CCceEEEECCC----Cce-EEEeCCCCCCccceEEecCCCEEEEecCC
Confidence 4222111 1244565542 23444421 22456666552 111 122222 12322222445566666555
Q ss_pred eEEEEEE
Q 002405 564 DVHIFHV 570 (927)
Q Consensus 564 ~i~l~~~ 570 (927)
.+..|+.
T Consensus 287 ~l~~~~~ 293 (299)
T 2z2n_A 287 KIGKLTL 293 (299)
T ss_dssp EEEEEEE
T ss_pred cEEEEEc
Confidence 5555443
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.68 E-value=6.5e-06 Score=88.37 Aligned_cols=102 Identities=8% Similarity=0.054 Sum_probs=71.2
Q ss_pred eCCcE-EEEeeecCccceeeec-ccc-----ee---cCCC-CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEE
Q 002405 228 SNGQL-MSCSVSKKGLKLAEFI-KID-----KE---LGSG-DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (927)
Q Consensus 228 ~dG~~-~~~~~~d~~~~~w~~~-~~~-----~~---~~h~-~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l 295 (927)
+||+. +++...++.+..|+.. .+. .+ .++. ... .++++++|++.++...++.|.+||.++ ++.+..+
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~ 263 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRI 263 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEE
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEE
Confidence 77753 4444455667767643 221 11 2332 445 899999999999888899999999875 5556666
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcCCcEEEEEccC
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG 338 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~Dg~v~vW~~~~ 338 (927)
.. +...+.+++|+|||+.|.++ ..++.|..|++..
T Consensus 264 ~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 264 RC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eC--------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 55 56779999999999955554 4567899998754
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.67 E-value=3.9e-06 Score=91.34 Aligned_cols=231 Identities=10% Similarity=-0.024 Sum_probs=133.8
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
.+++. ++++.++...+++|.+||..+ ++.+.++.. ......++++|||+..++...++.|.+||..+++
T Consensus 48 ~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~~---------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~ 116 (328)
T 3dsm_A 48 SMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRITG---------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE 116 (328)
T ss_dssp EEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEEC---------CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE
T ss_pred EEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcCC---------CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe
Confidence 67664 466777777889999999987 777777643 4567899999999655555478999999999988
Q ss_pred eEEEeccccc----cceecceecCCCCCCcccccc----cceeEEEcCCCceEEEEEcCCcce-EEEEec-cceeeeccc
Q 002405 341 LMSTIRQISL----SSISSPIVKPNQDCKYEPLMS----GTSMMQWDEYGYRLYAIEEGSSER-VLIFSF-GKCCLNRGV 410 (927)
Q Consensus 341 ~~~~l~~~~~----~~v~s~~~sp~~~~~~~~l~s----g~~~~~W~~~~~~l~~~~~~~~~~-v~~~~~-~~~~~s~s~ 410 (927)
...++..... .....+++ .++ ..+++ ..++.++++.++++.......... -+.++. ++..++...
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~-~~~----~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ-YGK----YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE-ETT----EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCC
T ss_pred EEEEEEcCCccccCCCcceEEE-ECC----EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECC
Confidence 7776654310 13344555 222 33333 126788888887776655322111 133444 444443332
Q ss_pred C----------CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002405 411 S----------GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (927)
Q Consensus 411 d----------~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd 479 (927)
+ +.+.+++...+ ++ -..+.++. ......++|+|||+++.++.. .+ +||
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~--~v------------~~~~~~~~-----g~~p~~la~~~d~~~lyv~~~--~v~~~d 250 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETF--TV------------EKQFKFKL-----GDWPSEVQLNGTRDTLYWINN--DIWRMP 250 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTT--EE------------EEEEECCT-----TCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred CccCCccccCCceEEEEECCCC--eE------------EEEEecCC-----CCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence 2 33333332111 10 00111111 124688999999999998876 66 999
Q ss_pred ccCCcEEeeCCccceeeeEEEEEEee--CCEEEEEEeecCCCeEEEEEeeCC
Q 002405 480 IRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (927)
Q Consensus 480 ~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~li~~~~~~~~~~~~l~l~~~~ 529 (927)
..+++.....-. ........++++. ++.+.+++.........+.+|+.+
T Consensus 251 ~~t~~~~~~~~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 251 VEADRVPVRPFL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp TTCSSCCSSCSB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCCCceeeeeee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 988764211100 0001124567774 445555542222345678888663
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.61 E-value=6.8e-07 Score=98.55 Aligned_cols=173 Identities=9% Similarity=0.029 Sum_probs=112.2
Q ss_pred eE-EEEEcCCCcEEEEEecCCeEEEEeccCCCc---------ceE-EEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESAS---------LIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 259 ~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~---------~~~-~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.+ .+++++++.++++|+.|+ +++|++++ .. ... .... +.+ |+.|+| ||++|+++ .
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~-l~~~~~~~~~~~~~~~~~~--------lp~-V~~l~f--d~~~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQL-LRDHITSDSTPLTFKWEKE--------IPD-VIFVCF--HGDQVLVS-T 104 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHH-HHHHHHSSSCCCCCSEEEE--------CTT-EEEEEE--ETTEEEEE-E
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhH-hhhhhccccccccceEEee--------CCC-eeEEEE--CCCEEEEE-c
Confidence 45 899999999999999985 55699764 21 111 1122 566 999999 99999999 8
Q ss_pred CCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeee
Q 002405 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLN 407 (927)
Q Consensus 328 Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s 407 (927)
+++|++||+.......++..+ ...+. .++.+ ...++.
T Consensus 105 ~~~l~v~dv~sl~~~~~~~~~-~~~v~-------------------~i~~~-----------------------~p~~av 141 (388)
T 1xip_A 105 RNALYSLDLEELSEFRTVTSF-EKPVF-------------------QLKNV-----------------------NNTLVI 141 (388)
T ss_dssp SSEEEEEESSSTTCEEEEEEC-SSCEE-------------------EEEEC-----------------------SSEEEE
T ss_pred CCcEEEEEchhhhccCcccee-eccee-------------------eEEec-----------------------CCCEEE
Confidence 899999999764322222211 00000 11111 111456
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE-
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW- 485 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w- 485 (927)
+..||++.+|++..+... .+...|++++|||+| +++|..||.+ +|+..++.-
T Consensus 142 ~~~dG~L~v~dl~~~~~~------------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 142 LNSVNDLSALDLRTKSTK------------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp EETTSEEEEEETTTCCEE------------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred EECCCCEEEEEccCCccc------------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence 678889999987643321 122469999999999 7889999999 999888773
Q ss_pred --EeeCCcc--ce---eeeEEEEEEeeCCEEEEEEe
Q 002405 486 --RVFGDIT--QE---QKIQSKGLLWLGKIIVVCNY 514 (927)
Q Consensus 486 --~~f~~~~--~e---~~~~v~~~~W~~~~li~~~~ 514 (927)
+.+.... +| .++.+.++.|..+......|
T Consensus 196 ~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 196 KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 3442211 11 24778999998654433334
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.59 E-value=4.6e-06 Score=93.21 Aligned_cols=74 Identities=8% Similarity=0.113 Sum_probs=60.3
Q ss_pred EEEcCCCcEEEEEec----------CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEE-cCC
Q 002405 262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR 329 (927)
Q Consensus 262 v~~sp~~~~la~g~~----------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~-~Dg 329 (927)
++++|+++.+.+... +++|.+.|..+ .+.+.++.. .+....++|+|||+ +++++. .++
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v---------g~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIEL---------GHEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEECEEEECCSSSCEEEEEETTTT
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEEC---------CCCcCeEEEccCCCEEEEEEcCCCC
Confidence 689999887666542 35799999988 777777765 22468999999999 888888 589
Q ss_pred cEEEEEccCCeeEEEe
Q 002405 330 GLTVWSVSGCRLMSTI 345 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l 345 (927)
.|.|+|+.+.+.+.++
T Consensus 394 ~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 394 TLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEe
Confidence 9999999999988887
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.58 E-value=3e-06 Score=91.09 Aligned_cols=226 Identities=7% Similarity=0.022 Sum_probs=120.8
Q ss_pred EEEEeCCcEEEE-------eeecCccceeeeccccee--c-----CCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccC
Q 002405 224 FVLYSNGQLMSC-------SVSKKGLKLAEFIKIDKE--L-----GSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 224 ~~~s~dG~~~~~-------~~~d~~~~~w~~~~~~~~--~-----~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~ 287 (927)
++++++|+++++ +..++.+..|+..+++.. . ++...+ +++++++ ++++++.. ++.|.+||.+
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~- 100 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD- 100 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-
Confidence 344677877777 566677777775443321 1 233445 9999999 77666554 4478888875
Q ss_pred CCcceEEE-eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---------------CcEEEEEccCCeeEEEecccccc
Q 002405 288 SASLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------RGLTVWSVSGCRLMSTIRQISLS 351 (927)
Q Consensus 288 ~~~~~~~l-~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---------------g~v~vW~~~~~~~~~~l~~~~~~ 351 (927)
++. ..+ ... ........+.+++++|||+..++...+ +.+..|+.. ++...... + ..
T Consensus 101 -g~~-~~~~~~~---~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~-~~ 172 (314)
T 1pjx_A 101 -GTF-EEIAKKD---SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-A-FQ 172 (314)
T ss_dssp -SCE-EECCSBC---TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-E-ES
T ss_pred -CCE-EEEEecc---CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-C-CC
Confidence 332 222 110 000123458899999999988877665 467777765 33322222 1 23
Q ss_pred ceecceec----CCCCCCccc-cccc---ceeEEEcCC-Cce-----EEEEEcCCc-ceE--EEEec-cceeeecccCCC
Q 002405 352 SISSPIVK----PNQDCKYEP-LMSG---TSMMQWDEY-GYR-----LYAIEEGSS-ERV--LIFSF-GKCCLNRGVSGM 413 (927)
Q Consensus 352 ~v~s~~~s----p~~~~~~~~-l~sg---~~~~~W~~~-~~~-----l~~~~~~~~-~~v--~~~~~-~~~~~s~s~d~~ 413 (927)
....++++ |++ .. +++. ..+..|+.. .++ .+....++. ... ++++. ++..++...++.
T Consensus 173 ~~~~i~~~~~~d~dg----~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRP----YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCE----EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CcceEEEecccCCCC----CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 45667788 776 33 2221 256677754 333 222222221 122 22222 333333223333
Q ss_pred eeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCC-ceE-EEEccCC
Q 002405 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LYDIRQK 483 (927)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d-g~i-~wd~~s~ 483 (927)
+..|+...+.. ...+..+...+.+++|+|||++|.+++.+ +.+ .|++...
T Consensus 249 i~~~d~~~g~~--------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 249 IEVFGPDGGQP--------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEECTTCBSC--------------------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEcCCCCcE--------------------eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 33333211111 11122233568899999999977766554 555 8887654
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.58 E-value=2e-06 Score=100.54 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=119.1
Q ss_pred EcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc--CCee
Q 002405 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRL 341 (927)
Q Consensus 264 ~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~--~~~~ 341 (927)
.+|.+.++++...+++|.++|..+ ++.+.++.. ...+..++|||||+++.+++.|+.|.+||+. +++.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGST-YEIKTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTT-CCEEEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred cCCCceEEEEeCCCCeEEEEECCC-CeEEEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence 446667788888999999999987 777776654 2346789999999999999999999999995 7777
Q ss_pred EEEeccccccceecceec----CCCCCCcccccccc----eeEEEcCCCceEEEEEcCC----------cc-eEEE--Ee
Q 002405 342 MSTIRQISLSSISSPIVK----PNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGS----------SE-RVLI--FS 400 (927)
Q Consensus 342 ~~~l~~~~~~~v~s~~~s----p~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~----------~~-~v~~--~~ 400 (927)
+.++... .....++|+ |++ ..+..+. ++.++|..+.+++....-. .. ++.. .+
T Consensus 233 v~~i~~G--~~P~~ia~s~~~~pDG----k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 233 VAEIKIG--SEARSIETSKMEGWED----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EEEEECC--SEEEEEEECCSTTCTT----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred eEEEecC--CCCceeEEccccCCCC----CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence 7777653 235678899 687 5554333 7788898888877654321 01 2211 11
Q ss_pred c--cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEe-CCceE-
Q 002405 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI- 476 (927)
Q Consensus 401 ~--~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag-~dg~i- 476 (927)
. ...+++...++.+.+.+.. . ..... ............+.|+|||+++.++. .++.+
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~--~----------~~~~~-------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYT--D----------LNNLK-------TTEISAERFLHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETT--C----------SSEEE-------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred CCCCEEEEEecCCCeEEEEecC--C----------Cccce-------eeeeeccccccCceECCCCCEEEEEeCCCCeEE
Confidence 1 1122222223333222211 1 10000 00112223456789999999988776 45667
Q ss_pred EEEccCCcE
Q 002405 477 LYDIRQKKW 485 (927)
Q Consensus 477 ~wd~~s~~w 485 (927)
++|..+++-
T Consensus 368 ViD~~t~kl 376 (567)
T 1qks_A 368 VIDTKEGKL 376 (567)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCcE
Confidence 999998863
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.55 E-value=2.3e-05 Score=83.18 Aligned_cols=231 Identities=7% Similarity=0.010 Sum_probs=130.5
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002405 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~ 100 (927)
..-+++.++|+++++. .++.|.+|+.. .. +..+... .......++++.|+|+..++...++.|..|+.. +.
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GR--IKEFEVP----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SC--EEEEECS----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eEEEECC----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3347889999987776 46889999985 22 2222211 112455789999999877666667888888754 22
Q ss_pred ceeecCCCCCCCccceeeeEEeecccccccccceEEEeecc-CCeEEEEec-CCcEEEEecCCccccceeecccCCCCcc
Q 002405 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~l~v~~~-dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
.. ... . ......+.+++.+ ...++++.. ++.+..++.++.. ....
T Consensus 94 ~~-~~~---------------~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~---------- 140 (300)
T 2qc5_A 94 FT-EYP---------------L------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTI-YEYD---------- 140 (300)
T ss_dssp EE-EEE---------------C------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-EEEE----------
T ss_pred eE-Eec---------------C------CCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCE-EEcc----------
Confidence 11 000 0 0000122333333 234555554 5677665433111 0000
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce--e--c
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E--L 254 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--~--~ 254 (927)
.......+..+. +.++|+++++...++.+..++. .++. . .
T Consensus 141 -------------------------~~~~~~~~~~i~----------~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~ 184 (300)
T 2qc5_A 141 -------------------------LPNKGSYPAFIT----------LGSDNALWFTENQNNSIGRITN-TGKLEEYPLP 184 (300)
T ss_dssp -------------------------CSSTTCCEEEEE----------ECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred -------------------------CCCCCCCceeEE----------ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCC
Confidence 000112334444 3566665555444444544443 2111 1 1
Q ss_pred CCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 255 ~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
.+.... ++++++++.+.++...++.|.+|+. + +.... .... .+...+.+++++|+|+..++...++.|..
T Consensus 185 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 185 TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE-YDIP------TPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE-EECS------STTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE-EECC------CCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 223334 9999999998888777888999997 3 43322 2210 13456899999999997777766789999
Q ss_pred EEccC
Q 002405 334 WSVSG 338 (927)
Q Consensus 334 W~~~~ 338 (927)
++..+
T Consensus 256 ~~~~g 260 (300)
T 2qc5_A 256 ITNDN 260 (300)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 99854
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.55 E-value=4.6e-07 Score=109.61 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=128.0
Q ss_pred EEEEeCCcEEEEeee-----cCccceeeecccceecCCCC-e-E-EEEEcCCCcEEEEEecCCe-------------EEE
Q 002405 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGD-A-V-CASIAPEQQILAVGTRRGV-------------VEL 282 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~~~~w~~~~~~~~~~h~~-~-v-~v~~sp~~~~la~g~~Dg~-------------V~v 282 (927)
+.+||||+.++.+.+ ..+++++|..+++....+.. . . .++|+ |++.|+.++.|.. |++
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 346889987776543 24577888877764432222 1 2 67899 9999999988843 999
Q ss_pred EeccCCCcceEEEeeecCCCCCC-CCCCeeEEEECCCCCEEEEEEc----CCcEEEEEccCCe-eEEEeccccccceecc
Q 002405 283 YDLAESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGWK----SRGLTVWSVSGCR-LMSTIRQISLSSISSP 356 (927)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~-h~~~V~~l~~spdg~~Lasg~~----Dg~v~vW~~~~~~-~~~~l~~~~~~~v~s~ 356 (927)
|++.+....-..+... .. |...+.++.|||||++|+.... ++.+.+|++.++. ....+..+ ......+
T Consensus 213 ~~lgt~~~~~~~v~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~~ 286 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGA-----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVSL 286 (693)
T ss_dssp EETTSCGGGCEEEESC-----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEEE
T ss_pred EECCCCcccceEEEec-----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEEE
Confidence 9987632221222220 01 2335788999999998865543 2478999987652 33444433 2222222
Q ss_pred eecCCCCCCcccc-ccc-----ceeEEEcCCCceE--EEEEcCCcceEEEEec-cceeeeccc-CC--CeeeeeeeecCC
Q 002405 357 IVKPNQDCKYEPL-MSG-----TSMMQWDEYGYRL--YAIEEGSSERVLIFSF-GKCCLNRGV-SG--MTYARQVIYGED 424 (927)
Q Consensus 357 ~~sp~~~~~~~~l-~sg-----~~~~~W~~~~~~l--~~~~~~~~~~v~~~~~-~~~~~s~s~-d~--~~~~w~~~~~~~ 424 (927)
+++++. ..+ .+. ..+..|+..++.. +..+..|...+..+++ ++.++.... ++ .+++|++. +..
T Consensus 287 -~~~~g~---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~ 361 (693)
T 3iuj_A 287 -VDNKGS---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE-GKR 361 (693)
T ss_dssp -EEEETT---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT-SCE
T ss_pred -EeccCC---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC-CCe
Confidence 334431 111 111 2566676665432 2222233333335555 555544333 33 23333322 111
Q ss_pred eEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCC----ceE-EEEccCCcEEeeC
Q 002405 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVFG 489 (927)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~d----g~i-~wd~~s~~w~~f~ 489 (927)
.+.+.. .....+..++++|+++.++....+ +.+ .||+.+++.+.+.
T Consensus 362 --------------~~~l~~-----p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 362 --------------VREVAL-----PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp --------------EEEECC-----SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred --------------eEEeec-----CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 011111 223456677888999877766554 667 8888787765543
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.50 E-value=2.3e-05 Score=83.25 Aligned_cols=228 Identities=8% Similarity=0.004 Sum_probs=126.0
Q ss_pred EEEeCCcEEEEeeecCccceeeeccccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~w~~~~~~~~----~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
++.++|+++++...++.+..++.. ++.. ..+...+ ++++++++++.++...++.|..||.+ +.. ..+...
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~- 100 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP- 100 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS-
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC-
Confidence 346777777766555666666544 2111 2222345 99999999988887778899999875 332 223221
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCccccccc---ceeE
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMM 376 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~~~ 376 (927)
.....+.++++.|+|+..++...++.|..++..+......+... ......+++++++ ..+++. ..+.
T Consensus 101 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~d~~g----~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 101 -----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK-GSYPAFITLGSDN----ALWFTENQNNSIG 170 (300)
T ss_dssp -----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEE
T ss_pred -----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC-CCCceeEEECCCC----CEEEEecCCCeEE
Confidence 12356899999999998888777789999998743222223222 3456778888877 544433 2566
Q ss_pred EEcCCCceEEEEE-cCCcceEEEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCce
Q 002405 377 QWDEYGYRLYAIE-EGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (927)
Q Consensus 377 ~W~~~~~~l~~~~-~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (927)
.++.. ++..... ..+...+..+.+ ..++ .+|........+..+.... .......+ .+...+
T Consensus 171 ~~~~~-g~~~~~~~~~~~~~~~~i~~-------d~~g--~l~v~~~~~~~i~~~~~~g----~~~~~~~~----~~~~~~ 232 (300)
T 2qc5_A 171 RITNT-GKLEEYPLPTNAAAPVGITS-------GNDG--ALWFVEIMGNKIGRITTTG----EISEYDIP----TPNARP 232 (300)
T ss_dssp EECTT-CCEEEEECSSTTCCEEEEEE-------CTTS--SEEEEETTTTEEEEECTTC----CEEEEECS----STTCCE
T ss_pred EECCC-CcEEEeeCCCCCCCcceEEE-------CCCC--CEEEEccCCCEEEEEcCCC----cEEEEECC----CCCCCc
Confidence 67763 3332221 111122222111 1122 1232222223333332200 01111112 233457
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002405 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (927)
Q Consensus 456 ~~va~spdG~~la~ag~dg~i-~wd~~s~~w~ 486 (927)
.+++++++|+..++...++.+ .|+. +++..
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGRITN-DNTIQ 263 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred eEEEECCCCCEEEeccCCCeEEEECC-CCcEE
Confidence 889999999966655555666 8887 44433
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.50 E-value=0.00012 Score=81.06 Aligned_cols=292 Identities=10% Similarity=0.001 Sum_probs=154.9
Q ss_pred EEEecCeEEEEEc---cC---eEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEec----------Cc
Q 002405 26 YFKVNNGLLLIAS---PC---HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SL 89 (927)
Q Consensus 26 ~fs~dg~lla~~~---~~---~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~----------dg 89 (927)
..+||++++-++. .+ +|.++|.. ....+.... .|..-.+++||||+.++++.. ++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~--------~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVN--------GGFLPNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECC-CCeEEEEec--------CCCCCCeEECCCCCEEEEEeccccccccCCCCC
Confidence 4557877544442 22 88999986 444433221 122238999999999999863 57
Q ss_pred EEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec--CCcEEEEecCCccccce
Q 002405 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAF 167 (927)
Q Consensus 90 ~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~--dg~i~~~~w~~~~~~~~ 167 (927)
.|.+||+.............. .+. ..+....-..+++|++.++++.. ++.|.+++ +... ..
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~-------------~~~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~--~~ 160 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDA-------------PRF-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS--SD 160 (373)
T ss_pred eEEEEECCCCcEEEEEECCCc-------------ccc-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC--EE
Confidence 899999863322111100000 000 00111112367889999999874 46787776 4322 11
Q ss_pred eecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccC-cceEEEEEeCCcEEEEeeecCccceee
Q 002405 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP-MRLLFVLYSNGQLMSCSVSKKGLKLAE 246 (927)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~~~~s~dG~~~~~~~~d~~~~~w~ 246 (927)
. . ......++ .+.+. ...++..++||+.++... ++... +.
T Consensus 161 ~------------~----------------------~i~~~~~~---~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~ 201 (373)
T 2mad_H 161 D------------Q----------------------LLSSPTCY---HIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GA 201 (373)
T ss_pred e------------E----------------------EcCCCceE---EEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EE
Confidence 0 0 00000111 11121 234455667777766655 44322 11
Q ss_pred ecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCC-cceEEEeeecCC--CCCCCCCCeeEEEECCCCCEE
Q 002405 247 FIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWG--YSMDDTGPVSCIAWTPDNSAF 322 (927)
Q Consensus 247 ~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~~~~~~--~~~~h~~~V~~l~~spdg~~L 322 (927)
........+..... ..++.+++..++..+.++.+.+.|+.... ..+..+...... ...-..+....++++|||+.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 10000001111222 45667766555555578899999986411 112222210000 000012335568899999988
Q ss_pred EEEEc----------CCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcc-ccccc---c-eeEEEcCCCceEEE
Q 002405 323 AVGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSG---T-SMMQWDEYGYRLYA 387 (927)
Q Consensus 323 asg~~----------Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~-~l~sg---~-~~~~W~~~~~~l~~ 387 (927)
.++.. ++.|.+.|..+++.+.++... .....++++|++ + .+.++ . ++.++|..+++.+.
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg----~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDG----GPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCC----CeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 87654 357999999999988888643 246788888887 4 23221 1 66777777776655
Q ss_pred E
Q 002405 388 I 388 (927)
Q Consensus 388 ~ 388 (927)
.
T Consensus 356 ~ 356 (373)
T 2mad_H 356 S 356 (373)
T ss_pred e
Confidence 4
No 210
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.43 E-value=7e-06 Score=90.19 Aligned_cols=77 Identities=8% Similarity=-0.044 Sum_probs=59.3
Q ss_pred EEEcCCCcEEEEEec-C--------CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEE-cCCc
Q 002405 262 ASIAPEQQILAVGTR-R--------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSRG 330 (927)
Q Consensus 262 v~~sp~~~~la~g~~-D--------g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~-~Dg~ 330 (927)
++++|+++.+.++.. + +.+.++|+.+ .+.+.++.. . +....++|+|||+ .+++.. .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~v--------g-~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN--------G-HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE--------E-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEEC--------C-CCcceEEECCCCCEEEEEccCCCCe
Confidence 789999988776543 2 3566999988 666666655 2 2478999999998 456666 5899
Q ss_pred EEEEEccCCeeEEEeccc
Q 002405 331 LTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~ 348 (927)
|.|+|+.+.+.+.++..+
T Consensus 339 VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEESSSCEEEEECCCC
T ss_pred EEEEECCCCcEEEEEECC
Confidence 999999999999888753
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.40 E-value=4.7e-05 Score=83.57 Aligned_cols=295 Identities=11% Similarity=0.034 Sum_probs=166.6
Q ss_pred EEEecCeEEEEE--c----cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEe----------cCc
Q 002405 26 YFKVNNGLLLIA--S----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT----------SSL 89 (927)
Q Consensus 26 ~fs~dg~lla~~--~----~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t----------~dg 89 (927)
...||++.+-++ . +++|.+.|.. ....+....- ..++ .+++||||+.++++. .++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~-t~~v~~~I~v------G~~P--~va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMIDG------GFLP--NPVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT-TTEEEEEEEE------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC-CCeEEEEEEC------CCCC--cEEECCCCCEEEEEcccccccccCCCCC
Confidence 457887654444 2 4689999986 5555554421 1233 599999999998886 357
Q ss_pred EEEEEEEEecCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEec--CCcEEEEecCCccccce
Q 002405 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAF 167 (927)
Q Consensus 90 ~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~--dg~i~~~~w~~~~~~~~ 167 (927)
.|.+||..+........ .....+. ..+....-..+++|++.++++.. ++.|.+++.........
T Consensus 110 ~VsviD~~t~~v~~~I~-------------v~~g~r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIE-------------LPDAPRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp EEEEECTTTCCEEEEEE-------------ETTCCCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCeEEEEEE-------------CCCcccc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 89999876433111110 0000000 00111122477889999999864 57787766543221110
Q ss_pred eecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec-Cccceee
Q 002405 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAE 246 (927)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~~~~w~ 246 (927)
+.. ..+ ...+......++++++||+++.....+ +.+. +
T Consensus 176 ----------------------------------I~v---~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~--~ 214 (386)
T 3sjl_D 176 ----------------------------------LDV---PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE--I 214 (386)
T ss_dssp ----------------------------------EEC---CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE--E
T ss_pred ----------------------------------EEC---CCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE--E
Confidence 000 001 112333445667889999988887764 4442 1
Q ss_pred ecccceecCCCCeE--EEEE-cCCCcEEEEEecCCeEEEEeccCCC-cceEEEeeecC-CC-CCCCCCCeeEEEECCCCC
Q 002405 247 FIKIDKELGSGDAV--CASI-APEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDW-GY-SMDDTGPVSCIAWTPDNS 320 (927)
Q Consensus 247 ~~~~~~~~~h~~~v--~v~~-sp~~~~la~g~~Dg~V~vwd~~~~~-~~~~~l~~~~~-~~-~~~h~~~V~~l~~spdg~ 320 (927)
..+ .....-...+ ..+| .++|+++. .+.+|+|.+.|+.... .....+..... .. ..-..+....++++|+++
T Consensus 215 ~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~ 292 (386)
T 3sjl_D 215 THT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 292 (386)
T ss_dssp EEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred eec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCC
Confidence 111 1110011222 2455 46786554 5668999999986521 12222220000 00 000123445688899999
Q ss_pred EEEEEEc----------CCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccc-c--ceeEEEcCCCceEEE
Q 002405 321 AFAVGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-G--TSMMQWDEYGYRLYA 387 (927)
Q Consensus 321 ~Lasg~~----------Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~s-g--~~~~~W~~~~~~l~~ 387 (927)
.+.++.. .+.|.+.|+.+++.+.++.-. ..+.+++++|++ +..++.+ + .++.++|..+++.+.
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~--~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDE--KPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSS--SCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCC--CeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 8888753 146999999999998887653 367889999997 1112221 2 277788888888777
Q ss_pred EEc
Q 002405 388 IEE 390 (927)
Q Consensus 388 ~~~ 390 (927)
...
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.39 E-value=1.8e-05 Score=84.70 Aligned_cols=127 Identities=9% Similarity=-0.018 Sum_probs=74.1
Q ss_pred Ee-CCcEEEEeeecCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC
Q 002405 227 YS-NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (927)
Q Consensus 227 s~-dG~~~~~~~~d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (927)
++ +|.++++...++.+..|+..+.+.. ......+ +++++|+|+++++ . ++.|.+||.++ +.. ..+.....
T Consensus 21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~-~~~~~~~~--- 93 (297)
T 3g4e_A 21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSA-VVLATVDN--- 93 (297)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEE-EEEEECCT---
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcE-EEEEecCC---
Confidence 45 3455665556666666765543221 1223456 9999999996654 3 56899999875 433 23322110
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcC---------CcEEEEEccC-CeeEEEeccccccceecceecCCC
Q 002405 304 MDDTGPVSCIAWTPDNSAFAVGWKS---------RGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~D---------g~v~vW~~~~-~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
......+++++++|||+++++...+ ..-.||.+.. +.... +..+ ....+.++++|++
T Consensus 94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~-~~~pngi~~spdg 160 (297)
T 3g4e_A 94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQ-VDISNGLDWSLDH 160 (297)
T ss_dssp TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEE-ESBEEEEEECTTS
T ss_pred CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeec-cccccceEEcCCC
Confidence 0012457899999999977765432 3346666642 23222 2222 3445778999987
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.39 E-value=5.1e-05 Score=85.12 Aligned_cols=245 Identities=9% Similarity=-0.010 Sum_probs=131.1
Q ss_pred EEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCc--EEEEEEEEecC
Q 002405 24 IIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITE 100 (927)
Q Consensus 24 iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg--~l~i~~l~~~~ 100 (927)
-++++++|+++++-. ++.|++|+.. .+.. ...... +....++|+|+++.|+++..++ .|..|+...+.
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~-~g~~-~~~~~~-------~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVD-DNKV-TTVHPG-------FKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETT-TTEE-EEEEET-------CCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECC-CCEE-EEeecc-------CCCCceeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 488999999887764 5789999985 3222 222211 1111299999999999988766 56666543221
Q ss_pred ceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccc
Q 002405 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (927)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~ 180 (927)
...... ..... ......-.++.+++..|+++..++.|++++.+........
T Consensus 206 ~~~~~g--------------~~~~~---~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~------------ 256 (409)
T 3hrp_A 206 APTRIG--------------QLGST---FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIK------------ 256 (409)
T ss_dssp CEEEEE--------------ECCTT---SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEE------------
T ss_pred eeEEee--------------eccch---hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEe------------
Confidence 100000 00000 0000011244554567888766777777655432211100
Q ss_pred cccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEe-CCcEEEEeeecCccceeeeccc-ceecC---
Q 002405 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKI-DKELG--- 255 (927)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~w~~~~~-~~~~~--- 255 (927)
..+.... .. ..+... ++++| +|.++++...++.+..++.... ....+
T Consensus 257 ~~~~~g~-----------------~~-~~P~~~----------ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~ 308 (409)
T 3hrp_A 257 QLELSGS-----------------LG-TNPGPY----------LIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSAT 308 (409)
T ss_dssp ECCCCSC-----------------CC-CSSCCE----------EEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTT
T ss_pred cccccCC-----------------CC-CCcccc----------EEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCC
Confidence 0000000 00 000002 33455 3555555544555554442211 00111
Q ss_pred -------------CCCeEEEEEcCCCcEEEEEe-cCCeEEEEeccCCCcceEEEeee--cCCCCC-----CCCCCeeEEE
Q 002405 256 -------------SGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLY--DWGYSM-----DDTGPVSCIA 314 (927)
Q Consensus 256 -------------h~~~v~v~~sp~~~~la~g~-~Dg~V~vwd~~~~~~~~~~l~~~--~~~~~~-----~h~~~V~~l~ 314 (927)
...+..++++|+|++.++-+ .++.|+.|++.+ +. +.++.+. ..+... ..-.....++
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence 12344899999999888888 899999999765 43 4445442 111100 0123478999
Q ss_pred ECCCCCEEEEEEcCCcEEEEEc
Q 002405 315 WTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 315 ~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
++|||.++++-+.++.|+.+++
T Consensus 387 vd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECSSSEEEEEESTTCEEEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEEEe
Confidence 9999988888888888887765
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.35 E-value=2.7e-05 Score=83.23 Aligned_cols=96 Identities=8% Similarity=0.126 Sum_probs=68.1
Q ss_pred EEEEcCCCcEE-EEEecCCeEEEEecc-CCCcce--EEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 261 CASIAPEQQIL-AVGTRRGVVELYDLA-ESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 261 ~v~~sp~~~~l-a~g~~Dg~V~vwd~~-~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.++|+|+++.| ++.+.++.|.+|+++ ..+... +.+.... .+.+....+++.++|++.++.+.++.|.+||.
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-----~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-----KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-----GGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-----CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 79999999865 556678999999985 213321 1221100 02356788999999998888888888999999
Q ss_pred cCCeeEEEeccccccceecceec-CCC
Q 002405 337 SGCRLMSTIRQISLSSISSPIVK-PNQ 362 (927)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~s~~~s-p~~ 362 (927)
.++++...+..+ ...+++++|. |++
T Consensus 228 ~tG~~~~~i~~p-~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 228 VTGKRLQTVKLP-VDKTTSCCFGGKNY 253 (297)
T ss_dssp TTCCEEEEEECS-SSBEEEEEEESGGG
T ss_pred CCceEEEEEECC-CCCceEEEEeCCCC
Confidence 877887777654 4567777776 554
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.34 E-value=1.5e-05 Score=87.30 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=70.0
Q ss_pred EeCCcEEEEeeecCccceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCC----Cc-----ceE--EE
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES----AS-----LIR--TV 295 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~----~~-----~~~--~l 295 (927)
..+|+.+.+...++.++.|. ..+-.++|+|+++.|.++..++. ++|.++.. +. ... ..
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~----------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH----------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp EETTEECBEECTTSCEECCC----------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred eECCEEEEeccCCCceecee----------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEe
Confidence 45676665555565554442 12237999999998888877764 55655320 10 000 11
Q ss_pred eeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+ +.+....+++++||+..++.+.++.|.+||..+++..............++++.+++
T Consensus 244 ~g--------~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 244 YS--------EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp EE--------ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred cc--------cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 12 344567799999999999999999999999844443222211112334555555544
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.33 E-value=2.5e-05 Score=87.74 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=90.9
Q ss_pred EEEEeCCcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEecCC--eEEEEeccCCCcceEEEeee
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~Dg--~V~vwd~~~~~~~~~~l~~~ 298 (927)
++++++|+++++...++.++.|+....... .....+ +++|+|+++.|.++..++ .|.+|+... +.....+...
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g~~ 213 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIGQL 213 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-BCEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEEEC
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-ceeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEeeec
Confidence 455788888887777778888876543321 121222 389999999988888766 788888765 3333333110
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE----eccccccce--ecceecCCCCCCccccccc
Q 002405 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST----IRQISLSSI--SSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~----l~~~~~~~v--~s~~~sp~~~~~~~~l~sg 372 (927)
...+...+.+++++|++..|.++..++.|..|+..++..... ..++ ...- +.++++|++. ..+++.
T Consensus 214 ----~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g---~lyv~d 285 (409)
T 3hrp_A 214 ----GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDS---NFYMSD 285 (409)
T ss_dssp ----CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTT---EEEEEE
T ss_pred ----cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCC---EEEEEe
Confidence 000235578899999544455577778899999987653221 1111 1111 2788888531 444433
Q ss_pred c---eeEEEcCCCc
Q 002405 373 T---SMMQWDEYGY 383 (927)
Q Consensus 373 ~---~~~~W~~~~~ 383 (927)
. .+..|+.++.
T Consensus 286 ~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 286 QNLSSVYKITPDGE 299 (409)
T ss_dssp TTTTEEEEECTTCC
T ss_pred CCCCEEEEEecCCC
Confidence 2 6777877664
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.30 E-value=5.5e-05 Score=82.07 Aligned_cols=144 Identities=10% Similarity=-0.006 Sum_probs=80.3
Q ss_pred EEEeC-CcEEEEeeecCccceeeeccccee-cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 225 VLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 225 ~~s~d-G~~~~~~~~d~~~~~w~~~~~~~~-~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
+++++ +.++++...++.+..|+...++.. ......+ +++++|+|+++++. .+ .|.+||.++ ++. ..+....
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~-g~~-~~~~~~~-- 128 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT-GVL-TLHAELE-- 128 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT-CCE-EEEECSS--
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC-CcE-EEEeeCC--
Confidence 34565 445555555666766765443221 1123456 99999999987764 44 488999876 443 2332210
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcC----CcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccc-ccc---c
Q 002405 302 YSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (927)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l-~sg---~ 373 (927)
.......+++++++|||+++++...+ +...||.+.+++.. .+..+ ....+.++++|++ ..+ .+. .
T Consensus 129 -~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-~~~~~-~~~~~~i~~s~dg----~~lyv~~~~~~ 201 (326)
T 2ghs_A 129 -SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFAD-ISIPNSICFSPDG----TTGYFVDTKVN 201 (326)
T ss_dssp -TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEE-ESSEEEEEECTTS----CEEEEEETTTC
T ss_pred -CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-EeeCC-CcccCCeEEcCCC----CEEEEEECCCC
Confidence 00013468999999999977765432 23344444344432 22222 3345678899887 432 221 2
Q ss_pred eeEEEcCC
Q 002405 374 SMMQWDEY 381 (927)
Q Consensus 374 ~~~~W~~~ 381 (927)
.+..|+.+
T Consensus 202 ~I~~~d~~ 209 (326)
T 2ghs_A 202 RLMRVPLD 209 (326)
T ss_dssp EEEEEEBC
T ss_pred EEEEEEcc
Confidence 56667653
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.23 E-value=1e-05 Score=97.61 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=108.8
Q ss_pred cCCCCeE-EEEEcCCCcEEEEEe-----cCCeEEEEeccCCCcceEE-EeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 254 LGSGDAV-CASIAPEQQILAVGT-----RRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 254 ~~h~~~v-~v~~sp~~~~la~g~-----~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.+|...+ .++|||||++||.+. .+.+|++||+++ ++.+.. +.. .....++|+ ||+.|+.++
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~----------~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLKD----------VKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEEE----------EESCCCEEE-TTTEEEEEE
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCccccCC----------ceeccEEEe-CCCEEEEEE
Confidence 3566677 899999999999543 345899999987 654332 221 113568999 999999998
Q ss_pred cCCc-------------EEEEEccCCe----eEEEecc-ccccceecceecCCCCCCccccc-c---c---ceeEEEcCC
Q 002405 327 KSRG-------------LTVWSVSGCR----LMSTIRQ-ISLSSISSPIVKPNQDCKYEPLM-S---G---TSMMQWDEY 381 (927)
Q Consensus 327 ~Dg~-------------v~vW~~~~~~----~~~~l~~-~~~~~v~s~~~sp~~~~~~~~l~-s---g---~~~~~W~~~ 381 (927)
.|.. |.+|++.++. ++..... + ...+.++.++|++ +.++ + + ..+.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ-HHRYVGATVTEDD----RFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG-CCSEEEEEECTTS----CEEEEEEESSSSCCEEEEEETT
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC-CeEEEEEEEcCCC----CEEEEEEccCCCCcEEEEEECC
Confidence 8754 9999986643 2322222 2 3346778899998 4442 1 1 145566654
Q ss_pred Cce-EEEEEcCCcceE-EEEec-ccee-eecccC---CCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCc
Q 002405 382 GYR-LYAIEEGSSERV-LIFSF-GKCC-LNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (927)
Q Consensus 382 ~~~-l~~~~~~~~~~v-~~~~~-~~~~-~s~s~d---~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (927)
++. .+..+..+.... ..++. ++.+ +..+.+ ..+..+++..+. ...|+ .+..|...
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~------------~~~~~------~l~~~~~~ 329 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG------------PAHWR------DLIPERQQ 329 (693)
T ss_dssp STTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC------------GGGCE------EEECCCSS
T ss_pred CCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC------------ccccE------EEecCCCC
Confidence 431 122222222222 11222 3332 222222 122222222111 11122 23344444
Q ss_pred eEEEEEccCCCEEEEEeCCc---eE-EEEccCCcEE
Q 002405 455 VQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWR 486 (927)
Q Consensus 455 I~~va~spdG~~la~ag~dg---~i-~wd~~s~~w~ 486 (927)
+. .|+|+|++|+....++ .+ +|++.++..+
T Consensus 330 ~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~ 363 (693)
T 3iuj_A 330 VL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR 363 (693)
T ss_dssp CE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE
T ss_pred EE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE
Confidence 44 8999999998776654 45 7887755433
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.17 E-value=0.00028 Score=75.53 Aligned_cols=67 Identities=10% Similarity=-0.035 Sum_probs=53.3
Q ss_pred EEEEcCCCc-EEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 261 ~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
..+|+|+++ ++.++..++.|..|+.+ ++ ...+.. +.+.+..++|+|||+++++...++.|.+|+..+
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g 116 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG 116 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEE--------SCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeC--------CCCccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence 789999998 77888889999999873 33 444555 567789999999999777666668899999864
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.17 E-value=8.2e-05 Score=80.65 Aligned_cols=94 Identities=7% Similarity=0.089 Sum_probs=63.2
Q ss_pred EEEEcCCCcEEEE-EecCCeEEEEecc--CCC-cc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 261 CASIAPEQQILAV-GTRRGVVELYDLA--ESA-SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 261 ~v~~sp~~~~la~-g~~Dg~V~vwd~~--~~~-~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
.++|+|+++.+.. .+.++.|.+|+++ + + .. ...+.... ...+....+++.++|++.++.+.++.|.+|
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~-----~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDST-----GIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECT-----TSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECC-----CCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 8899999986654 4567899999986 3 3 22 12222100 134556889999999988888877899999
Q ss_pred EccCCeeEEEeccccccceecceec-CCC
Q 002405 335 SVSGCRLMSTIRQISLSSISSPIVK-PNQ 362 (927)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~s~~~s-p~~ 362 (927)
+.. ++....+..+ ...+++++|+ |++
T Consensus 257 d~~-g~~~~~i~~~-~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 257 DTD-GNHIARYEVP-GKQTTCPAFIGPDA 283 (326)
T ss_dssp CTT-CCEEEEEECS-CSBEEEEEEESTTS
T ss_pred CCC-CCEEEEEECC-CCCcEEEEEecCCC
Confidence 984 4555555543 3346666665 543
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.13 E-value=0.002 Score=71.85 Aligned_cols=270 Identities=11% Similarity=0.048 Sum_probs=153.0
Q ss_pred CCCcEEEEEec-C----CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE----------cCCc
Q 002405 266 PEQQILAVGTR-R----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRG 330 (927)
Q Consensus 266 p~~~~la~g~~-D----g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~----------~Dg~ 330 (927)
|+++.+.+... + ++|.++|..+ .+.+.++.. -..+ .+++||||++|.++. .++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~v--------G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDG--------GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEE--------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEEC--------CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 45555444443 2 6999999988 777777776 3445 799999999888876 3678
Q ss_pred EEEEEccCCeeEEEecccc------ccceecceecCCCCCCcccccc-----cceeEEEcCCCceEEEEEcCCcceEEEE
Q 002405 331 LTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPLMS-----GTSMMQWDEYGYRLYAIEEGSSERVLIF 399 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~------~~~v~s~~~sp~~~~~~~~l~s-----g~~~~~W~~~~~~l~~~~~~~~~~v~~~ 399 (927)
|.++|..+.+...++.-.+ ...-..++++|++ +.+.. ..++.+.|..+.+++..+.-.. .....
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~~~~~ 225 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-CYHIF 225 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-ceeec
Confidence 9999999998887765210 1224567899998 43321 1256777888877766554211 11111
Q ss_pred ec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCce-EEEEEccCCCEEEEEeCCceE-
Q 002405 400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMFLAVAGLHGLI- 476 (927)
Q Consensus 400 ~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I-~~va~spdG~~la~ag~dg~i- 476 (927)
+. .+..++.+.|+.+...+. .. .++ .+... ..+.....++ ..+.++++|+.++..+..|.+
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~-~~-~~v-----------~~~~~---~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ 289 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDF-AD-GET-----------KVTNT---EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF 289 (426)
T ss_dssp EEETTEEEEEETTSSEEEEEC-CT-TCC-----------EEEEC---CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred cCCCcEEEEEcCCCCEEEEEC-CC-CcE-----------EEEee---eeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence 11 233345555665544343 11 111 00000 0111111222 135789999988888888988
Q ss_pred EEEccCCc------EEeeCCccceeeeEEEE---EEee--CCEEEEEEeecC-----CCeEEEEEeeCCCCCccceeEEE
Q 002405 477 LYDIRQKK------WRVFGDITQEQKIQSKG---LLWL--GKIIVVCNYIDS-----SNTYELLFYPRYHLDQSSLLCRK 540 (927)
Q Consensus 477 ~wd~~s~~------w~~f~~~~~e~~~~v~~---~~W~--~~~li~~~~~~~-----~~~~~l~l~~~~~l~~~~~~~~~ 540 (927)
+.|..++. |........+......+ +... ++.+.+++.... ....++.+++...+ .++.+.
T Consensus 290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I 366 (426)
T 3c75_H 290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKI 366 (426)
T ss_dssp EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEE
T ss_pred EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEE
Confidence 88986543 33221111111111112 3443 455555433211 13467888877422 344444
Q ss_pred ecCCc--cEEEEccCC-EEEEEE-cCCeEEEEEE
Q 002405 541 SLLAK--PIVMDVYED-YILVTY-RPFDVHIFHV 570 (927)
Q Consensus 541 ~~~~~--~~~~~~~~~-~l~v~~-~d~~i~l~~~ 570 (927)
.++.. -+.+++.+. .+++.. .++++.+++.
T Consensus 367 ~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 367 ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp EEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 34332 367788888 788877 4899999875
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.13 E-value=0.00016 Score=78.94 Aligned_cols=122 Identities=11% Similarity=0.008 Sum_probs=78.3
Q ss_pred EEEEeCCcEEEEeee--cCccceeeeccccee---------cCCCCeE-EEEEcCCCcEEEEEec-----CCeEEEEecc
Q 002405 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE---------LGSGDAV-CASIAPEQQILAVGTR-----RGVVELYDLA 286 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~--d~~~~~w~~~~~~~~---------~~h~~~v-~v~~sp~~~~la~g~~-----Dg~V~vwd~~ 286 (927)
+++++||+++++... ++..++|....++.. .+|...+ .++++|++++.++-.. ++.|.+||+.
T Consensus 22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL 101 (343)
T ss_dssp EEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT
T ss_pred EEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC
Confidence 556788888776432 232455544322211 1234456 9999999998887655 6899999998
Q ss_pred CCCcceEEEeeecCCCCCCCCCCeeEEEECCCC-CEEEEEE---cCCcEEEEEccCCeeEEEeccc
Q 002405 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGW---KSRGLTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~---~Dg~v~vW~~~~~~~~~~l~~~ 348 (927)
+ ++.++++...... ..+...+..++++|++ ...++.. .+++|.+||..+++....+.+|
T Consensus 102 t-g~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 102 N-NQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp T-TEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred C-CeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 7 6656665541110 1133457899999864 4455555 6789999999888776666543
No 223
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.98 E-value=0.024 Score=69.27 Aligned_cols=374 Identities=11% Similarity=0.081 Sum_probs=182.3
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeCh---HhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~---~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~ 101 (927)
+...++|.+.+...++.+.+|+.. ... +..+.... .++ ....+.++...++|. |.+||.+| |.+|+.....-
T Consensus 220 i~~d~~g~lwigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~ 294 (795)
T 4a2l_A 220 ILQQSPTRIWVATEGAGLFLINPK-TKE-IKNYLHSPSNPKSI-SSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSF 294 (795)
T ss_dssp EEEEETTEEEEEEBSSCEEEEETT-TTE-EEEECCCTTCTTSC-SCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEE
T ss_pred EEEcCCCCEEEEECCCCeEEEeCC-CCe-EEEeecCCCCcccc-CCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeE
Confidence 445566877765556679999875 322 22222211 111 134567888888886 55577665 77776432211
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccccceEEEeeccC-CeEEEEecCCcEEEEecCCccccceeecccCCCCcccc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~ 180 (927)
.......... ..-....|.++..|. ..+.+|+.++-+..++-....-..+.
T Consensus 295 ~~~~~~~~~~----------------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~------------ 346 (795)
T 4a2l_A 295 ASYSSNPVEN----------------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIR------------ 346 (795)
T ss_dssp EEECCCTTST----------------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEEC------------
T ss_pred EEEecCCCCC----------------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEc------------
Confidence 1111000000 001123566776665 56889998777766532211100010
Q ss_pred cccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccce--ec-C--
Q 002405 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--EL-G-- 255 (927)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~--~~-~-- 255 (927)
..+. .. .-....|.++.. .++|.+++ +..++.+..++..+... .. .
T Consensus 347 ~~~~--~~----------------~l~~~~V~~i~~----------d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 347 NIPY--KN----------------SLSDNVVSCIVE----------DKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp CCTT--SS----------------SCSCSSEEEEEE----------CTTSCEEE-EESSSCEEEECTTTCCEEEECCC--
T ss_pred CCCC--CC----------------CCCCCeeEEEEE----------CCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCC
Confidence 0000 00 001233555543 44555554 23333444444332211 10 0
Q ss_pred ------CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 256 ------SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 256 ------h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
....| ++...+++++|-+|+.++-+..||..+ +. ...+.... ..-+...|.++...++|+..+...
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~---~~l~~~~v~~i~~d~~g~lwigt~-- 470 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRN---SQLVNENVYAILPDGEGNLWLGTL-- 470 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTT---SCCSCSCEEEEEECSSSCEEEEES--
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCC---CCcCCCeeEEEEECCCCCEEEEec--
Confidence 13456 888889998666778877899999875 43 23232100 001356799999999998666554
Q ss_pred CcEEEEEccCCeeEEEecc-----ccccceecceecCCCCCCccccccc-ceeEEEcCCCceEEEEEc--C----CcceE
Q 002405 329 RGLTVWSVSGCRLMSTIRQ-----ISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEE--G----SSERV 396 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~-----~~~~~v~s~~~sp~~~~~~~~l~sg-~~~~~W~~~~~~l~~~~~--~----~~~~v 396 (927)
+++.+|+..+++....... .....|.++...+++ ..+++. .-+..|+..+.+. .... . ....|
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i 545 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK----RLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLFT 545 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC----CEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSCE
T ss_pred CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC----CEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCee
Confidence 6799999877654321111 012345555555555 444322 1344455544443 1110 0 01122
Q ss_pred EEEeccceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002405 397 LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (927)
Q Consensus 397 ~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i 476 (927)
..+. .|....+|.-..+ .+..+.... ..+........+ .+..|.++..+++|+..+ ++.+|..
T Consensus 546 ~~i~---------~d~~g~lWigT~~--Gl~~~d~~~---~~~~~~~~~~gl--~~~~i~~i~~d~~g~lWi-~t~~Gl~ 608 (795)
T 4a2l_A 546 NCIY---------EASNGIIWVGTRE--GFYCFNEKD---KQIKRYNTTNGL--PNNVVYGILEDSFGRLWL-STNRGIS 608 (795)
T ss_dssp EEEE---------ECTTSCEEEEESS--CEEEEETTT---TEEEEECGGGTC--SCSCEEEEEECTTSCEEE-EETTEEE
T ss_pred EEEE---------ECCCCCEEEEeCC--CceeECCCC---CcEEEeCCCCCC--chhheEEEEECCCCCEEE-EcCCceE
Confidence 2221 1222223322111 222222110 011111111111 134588899999997655 4578877
Q ss_pred EEEccCCcEEeeC
Q 002405 477 LYDIRQKKWRVFG 489 (927)
Q Consensus 477 ~wd~~s~~w~~f~ 489 (927)
.|+..+++++.|.
T Consensus 609 ~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 609 CFNPETEKFRNFT 621 (795)
T ss_dssp EEETTTTEEEEEC
T ss_pred EEcCCCCcEEEcC
Confidence 9999888877664
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.97 E-value=4.3e-06 Score=92.63 Aligned_cols=178 Identities=13% Similarity=-0.001 Sum_probs=91.9
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
++..+++|+.||.|..||..+ ++.+-++.. +++.+..+.++|..+++++.||.+..||..+++....+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 578899999999999999988 766655443 344455566788888888899999999998777665554
Q ss_pred ccccccee-cceecCCCCCCcccccccc---eeEEEcCCCceEEEEEcCCcceEEEEec-cceeeecccCCCeeeeeeee
Q 002405 347 QISLSSIS-SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 347 ~~~~~~v~-s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~s~d~~~~~w~~~~ 421 (927)
.+....+. ++.+..+ ..+..|. .+..|+..++++......+. ...+++ ++.++.++.|+.++.|+..+
T Consensus 77 ~~~~~~~~~sp~~~~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 77 FTIPELVQASPCRSSD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CCHHHHHTTCSCC----------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSS
T ss_pred ccCccccccCceEecC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCC
Confidence 33111111 1222112 3344433 78899999887765544332 122233 55667777788888887665
Q ss_pred cCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCC---CEEEEEeCCceE-EEEccCCc
Q 002405 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQKK 484 (927)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG---~~la~ag~dg~i-~wd~~s~~ 484 (927)
++. .|+... .. ....++++++ ..+++++.+|.+ .||..+|+
T Consensus 150 G~~-------------~W~~~~-----~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 150 REL-------------RWNATY-----FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSC-------------CCEEEE-----EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCE-------------EEeEec-----cc----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 543 333210 00 1112334432 557778889999 99998876
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.93 E-value=0.00035 Score=74.70 Aligned_cols=130 Identities=10% Similarity=0.054 Sum_probs=78.4
Q ss_pred EEEEeCCc-EEEEeeecCccceeeeccc-ceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC
Q 002405 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKI-DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (927)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~~~~w~~~~~-~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (927)
.++++||+ ++++...++.+..|+.... ..+..+...+ .++++++|+++++...++.|.+|+.+ ++ ...+.....
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~-~~~~~~~~~ 126 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQ-AHLLVGRYA 126 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEECEET
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CC-EEEEEeccC
Confidence 34577877 5555555666777764211 1122234445 89999999988776677889999875 33 222221100
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEE----EEc-------------CCcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 301 GYSMDDTGPVSCIAWTPDNSAFAV----GWK-------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Las----g~~-------------Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
+ .....+++++++|||+..++ |.. .+.|..++..+++..... . ....+.++|+|++
T Consensus 127 ~---~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-~~~p~gl~~spdg 199 (305)
T 3dr2_A 127 G---KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-LDHPNGLAFSPDE 199 (305)
T ss_dssp T---EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-ESSEEEEEECTTS
T ss_pred C---CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-CCCCcceEEcCCC
Confidence 0 01234678999999998886 331 245677776555443322 2 3445678899987
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.92 E-value=0.0025 Score=70.11 Aligned_cols=251 Identities=10% Similarity=0.025 Sum_probs=129.3
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
++..+.+++.+|.|..+|..+ ++.+-....... ....++ . ++..+.+++.++.+..+|..+++......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~----~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGE----ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECSSC----CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCc----eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 456777889999999999987 665544443100 011121 1 24477778888999999998887776654
Q ss_pred ccccc----ceecceecCCCCCCccccccc--ceeEEEcCCCceEEEEEcCCc-c------eE--EEEec---cceeeec
Q 002405 347 QISLS----SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSS-E------RV--LIFSF---GKCCLNR 408 (927)
Q Consensus 347 ~~~~~----~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~-~------~v--~~~~~---~~~~~s~ 408 (927)
..... ...++... ++ ..++.. ..+..+++.+++......... . .+ ....+ +..+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~-~~----~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 171 LDMPSLSLRGESAPTTA-FG----AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp CCC-----CCCCCCEEE-TT----EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred CCCCceeecCCCCcEEE-CC----EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 32110 00222222 11 222221 256777776665543332110 0 00 00000 2334444
Q ss_pred ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--E
Q 002405 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W 485 (927)
Q Consensus 409 s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~--w 485 (927)
+.++.+..++..+++ ..|+.. ......... ++..+.+++.+|.+ .+|..+++ |
T Consensus 246 ~~~g~l~~~d~~tG~-------------~~w~~~---------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQ-------------IMWKRE---------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp CTTSCEEEEETTTCC-------------EEEEEC---------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred ecCcEEEEEECCCCc-------------EEeecc---------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 445555444433222 234421 011223333 46778888888888 99998886 5
Q ss_pred EeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccEE--EEccCCEEEEEEcCC
Q 002405 486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV--MDVYEDYILVTYRPF 563 (927)
Q Consensus 486 ~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~v~~~d~ 563 (927)
+.-.. ... ........++.++++. ....|.+++.. +..++++..++...+. ....++.|++.+.+|
T Consensus 302 ~~~~~--~~~--~~~~~~~~~~~l~v~~-----~~g~l~~~d~~---tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G 369 (376)
T 3q7m_A 302 TQSDL--LHR--LLTSPVLYNGNLVVGD-----SEGYLHWINVE---DGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDG 369 (376)
T ss_dssp EECTT--TTS--CCCCCEEETTEEEEEC-----TTSEEEEEETT---TCCEEEEEECCTTCBCSCCEEETTEEEEEBTTS
T ss_pred eeccc--CCC--cccCCEEECCEEEEEe-----CCCeEEEEECC---CCcEEEEEecCCCcceeCCEEECCEEEEEeCCC
Confidence 43211 010 1112223456666652 23467777653 2346666655322211 123478899999999
Q ss_pred eEEEEE
Q 002405 564 DVHIFH 569 (927)
Q Consensus 564 ~i~l~~ 569 (927)
.+..|+
T Consensus 370 ~l~~~~ 375 (376)
T 3q7m_A 370 TVYSIT 375 (376)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 888774
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.89 E-value=0.11 Score=63.48 Aligned_cols=208 Identities=10% Similarity=0.148 Sum_probs=109.0
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC-CCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~-~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
...| ++...++|.+-+ |+.++-+..|+..+ +. ...+........ .-....|.++...++|+.|-.|..++++..+
T Consensus 356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEEE-EESSSCEEEECTTT-CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEECCCCCEEE-EECCCCeEEEcCCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 3457 888888887554 67777788898765 32 222221000000 0024679999999999866677777899999
Q ss_pred EccCCeeEEEecc----ccccceecceecCCCCCCccccccc-ceeEEEcCCCceEEEEEcC------CcceEEEEec--
Q 002405 335 SVSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEG------SSERVLIFSF-- 401 (927)
Q Consensus 335 ~~~~~~~~~~l~~----~~~~~v~s~~~sp~~~~~~~~l~sg-~~~~~W~~~~~~l~~~~~~------~~~~v~~~~~-- 401 (927)
+..+++.. .+.. .....|.++...+++ ..+++. ..+..|++.+++....... +...|..+..
T Consensus 433 d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 507 (795)
T 4a2l_A 433 HRNSGQVE-NFNQRNSQLVNENVYAILPDGEG----NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS 507 (795)
T ss_dssp ETTTCCEE-EECTTTSCCSCSCEEEEEECSSS----CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred eCCCCcEE-EeecCCCCcCCCeeEEEEECCCC----CEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence 98876533 2221 112346666665555 444432 2455566665544322111 0122322221
Q ss_pred -cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEc
Q 002405 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (927)
Q Consensus 402 -~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~ 480 (927)
++.-+ +.. +.+..++... .+ ++....+..-......|.++..+++|+..+ |+..|...||.
T Consensus 508 ~g~lWi-gt~-~Gl~~~~~~~--~~-------------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~Gl~~~d~ 569 (795)
T 4a2l_A 508 HKRLWI-GGE-EGLSVFKQEG--LD-------------IQKASILPVSNVTKLFTNCIYEASNGIIWV-GTREGFYCFNE 569 (795)
T ss_dssp TCCEEE-EES-SCEEEEEEET--TE-------------EEECCCSCSCGGGGSCEEEEEECTTSCEEE-EESSCEEEEET
T ss_pred CCCEEE-EeC-CceEEEeCCC--Ce-------------EEEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCCCceeECC
Confidence 21111 111 1222222211 11 100000000011335689999999998555 44558779999
Q ss_pred cCCcEEeeCC
Q 002405 481 RQKKWRVFGD 490 (927)
Q Consensus 481 ~s~~w~~f~~ 490 (927)
.+++++.+..
T Consensus 570 ~~~~~~~~~~ 579 (795)
T 4a2l_A 570 KDKQIKRYNT 579 (795)
T ss_dssp TTTEEEEECG
T ss_pred CCCcEEEeCC
Confidence 9998887753
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.78 E-value=0.0015 Score=78.22 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=56.4
Q ss_pred EEEEcCCCcEEEEEecCCe-------------------EEEEeccCCCcceEEEeeecCCC-CCCCCCCeeEEEECCCCC
Q 002405 261 CASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNS 320 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~-------------------V~vwd~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spdg~ 320 (927)
.++++|+..++.+++.++. |..+|.++ ++.+-.++...... ......+........+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 6789999999999998874 99999988 76665554321000 000122222223334776
Q ss_pred ---EEEEEEcCCcEEEEEccCCeeEEE
Q 002405 321 ---AFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 321 ---~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
.++.++.+|.+.++|..+++++..
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEecc
Confidence 899999999999999999887743
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.76 E-value=0.00024 Score=77.85 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=55.4
Q ss_pred EEEEcCCCcEEEEEe----------cCCeEEEEeccCCCcceEEEeeec-CCCCCCCCCCeeEEEECCCCCEEEEEEc--
Q 002405 261 CASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWK-- 327 (927)
Q Consensus 261 ~v~~sp~~~~la~g~----------~Dg~V~vwd~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~spdg~~Lasg~~-- 327 (927)
.++++||++.+.++. .+++|.+||..+ .+.+.++.... .... ....-..+++||||++|+++..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~--~g~~P~~ia~SpDGk~lyVan~~~ 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFS--VGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCC--BSCCTTSEEECTTSSCEEEEECSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccc--cCCCcceEEEcCCCCEEEEEccCC
Confidence 799999999988886 478999999998 77777776510 0000 0012357999999999999875
Q ss_pred CCcEEE--EEccC
Q 002405 328 SRGLTV--WSVSG 338 (927)
Q Consensus 328 Dg~v~v--W~~~~ 338 (927)
+..+.+ +|..+
T Consensus 146 ~~~v~V~~iD~~t 158 (368)
T 1mda_H 146 SAAAGLSVPGASD 158 (368)
T ss_dssp SCEEEEEETTTEE
T ss_pred CCeEEEEEEchhh
Confidence 357888 98866
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.58 E-value=0.013 Score=64.86 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=111.0
Q ss_pred EEc--CCCcEE-EEEecCCeEEEEeccCCC---cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC------Cc
Q 002405 263 SIA--PEQQIL-AVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RG 330 (927)
Q Consensus 263 ~~s--p~~~~l-a~g~~Dg~V~vwd~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D------g~ 330 (927)
.++ ++.++| +.|..++.|.|+|+.+.. +..+++...+.....+-+ .-..+..+||| .++++..+ |+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSSC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCCe-EEEEcCCCcCCCCCCe
Confidence 446 666654 556678899999997522 233333200000000001 22457788999 66666665 78
Q ss_pred EEEEEccCCeeEEEeccc-ccc-ceecceecCCCCCCcccccc----------------------cceeEEEcCCCceEE
Q 002405 331 LTVWSVSGCRLMSTIRQI-SLS-SISSPIVKPNQDCKYEPLMS----------------------GTSMMQWDEYGYRLY 386 (927)
Q Consensus 331 v~vW~~~~~~~~~~l~~~-~~~-~v~s~~~sp~~~~~~~~l~s----------------------g~~~~~W~~~~~~l~ 386 (927)
+.+.|..+.+.+.++... +.. --..+.++|++ +.+.+ +.++.+|+..++++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 999999999888888632 111 11224457776 33322 248899999888877
Q ss_pred EEEcCC-c--ceE-EEE--ec-cceeeecc------cCCCeeeeeeeecCCeEEEeecCCCCcceEEEee---cCc----
Q 002405 387 AIEEGS-S--ERV-LIF--SF-GKCCLNRG------VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN---LPV---- 446 (927)
Q Consensus 387 ~~~~~~-~--~~v-~~~--~~-~~~~~s~s------~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~---- 446 (927)
.++.-. . ... +.| ++ ++.+..++ .++++.+|... +. .|+..+ ++.
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d--~g-------------~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE--DG-------------KWNAEKVIEIPAEPLE 306 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--TT-------------EEEEEEEEEECCEECC
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec--CC-------------ceeEEEEEeCCCcccc
Confidence 766432 1 111 233 44 55554444 33445444332 11 122111 111
Q ss_pred --------ccccCCCceEEEEEccCCCEEEEEeC-CceE-EEEcc
Q 002405 447 --------SYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIR 481 (927)
Q Consensus 447 --------~~~~~~~~I~~va~spdG~~la~ag~-dg~i-~wd~~ 481 (927)
.+.+-......+.+||||++|.++.+ .+.+ +||+.
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 11111233567999999999999887 4566 99985
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.58 E-value=0.0059 Score=67.13 Aligned_cols=144 Identities=14% Similarity=0.013 Sum_probs=72.8
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
+..+.+|+.+|.+..+|..+ ++.+-.......... .....+..+.-+| ++..+.+++.++.+..+|..+++.....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGS-TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp TTEEEECCTTTEEEEEETTT-CCEEEEEECCC------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCC-cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec
Confidence 34677788899999999987 655544432100000 0000000111122 3566777778899999999888776655
Q ss_pred ccccccceecceecCCCCCCccccc-cc-ceeEEEcCCCceEEEEEcC-CcceEEEEe-ccceeeecccCCCeeeeeeee
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLM-SG-TSMMQWDEYGYRLYAIEEG-SSERVLIFS-FGKCCLNRGVSGMTYARQVIY 421 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~-sg-~~~~~W~~~~~~l~~~~~~-~~~~v~~~~-~~~~~~s~s~d~~~~~w~~~~ 421 (927)
... ....+.... + ..++ +. ..+..++..+++....... ....+.... .+..+..++.++.+..++...
T Consensus 266 ~~~---~~~~~~~~~-~----~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 266 ELG---SVNDFIVDG-N----RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp CCC---CEEEEEEET-T----EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTT
T ss_pred cCC---CCCCceEEC-C----EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCC
Confidence 422 222333221 1 2222 21 2677788777665444331 111111111 144555666666666665443
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.53 E-value=6.9e-06 Score=90.97 Aligned_cols=173 Identities=11% Similarity=0.011 Sum_probs=75.5
Q ss_pred CCcEEEEeeecCccceeeeccccee---cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCC
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (927)
+|..+++++.|+.+..||..+++.. .. +.+ +..+.++++++++++.||.|+.||..+ ++.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~------- 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF------- 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC-------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec-------
Confidence 3444555555666666665555432 22 233 555567788888889999999999977 655444432
Q ss_pred CCCC-CeeE-EEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc---eeEEEc
Q 002405 305 DDTG-PVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (927)
Q Consensus 305 ~h~~-~V~~-l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (927)
+.+ .+.+ ...+ ++..+++|+.|+.+..||..+|+...++..++ ...++|++ ..+..++ .+..|+
T Consensus 78 -~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~----~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 78 -TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPST----SLLYLGRTEYTITMYD 146 (369)
T ss_dssp -CHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCC
T ss_pred -cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccC----CEEEEEecCCEEEEEE
Confidence 211 1100 0111 34567788888999999999888877766542 12344543 4444433 788899
Q ss_pred CCCceEEEEEcCCcceEEEEec----cceeeecccCCCeeeeeeeec
Q 002405 380 EYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYG 422 (927)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~s~d~~~~~w~~~~~ 422 (927)
..++++......+...-..+.. ...+..++.|+.+..|+..++
T Consensus 147 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 147 TKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp SSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred CCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 8877653322211100001111 134555666777766665433
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.52 E-value=0.00099 Score=76.30 Aligned_cols=238 Identities=12% Similarity=0.027 Sum_probs=129.7
Q ss_pred EeCCcEEEEeeec-Cccceeeeccccee-----cCCCCeEEEEE-c-CCCcEEEEEe------------------cCCeE
Q 002405 227 YSNGQLMSCSVSK-KGLKLAEFIKIDKE-----LGSGDAVCASI-A-PEQQILAVGT------------------RRGVV 280 (927)
Q Consensus 227 s~dG~~~~~~~~d-~~~~~w~~~~~~~~-----~~h~~~v~v~~-s-p~~~~la~g~------------------~Dg~V 280 (927)
.+||++++.+..+ ..+...|..+.++. ..-.+.-.+++ + |+++++.+++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 4578876665543 34556666554422 11123337787 5 9999988874 35688
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-------------------------------
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR------------------------------- 329 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg------------------------------- 329 (927)
.+.|.++ .+...++.. .+.-.-++.+|||+++++++.+.
T Consensus 178 tvID~~t-~~v~~qI~V---------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADK-WEVAWQVLV---------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTT-TEEEEEEEE---------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCC-CeEEEEEEe---------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 8999886 555555543 11224578999999999988653
Q ss_pred -------cEEEEEccC--Cee-EEEeccccccceecceecCCCCCCccccc-ccc---eeEEEcCCCce-----------
Q 002405 330 -------GLTVWSVSG--CRL-MSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMMQWDEYGYR----------- 384 (927)
Q Consensus 330 -------~v~vW~~~~--~~~-~~~l~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~~~~W~~~~~~----------- 384 (927)
+|.|.|..+ +.. ...+... .....+.++||+ +.+. ++- ++.+++..+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDG----k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDK----KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTS----SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCC----CEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 466777665 333 3344321 234567888988 4433 222 66677766432
Q ss_pred -EEEEEcCCcceE-EEEec-cceeeecccCCCeeeeeeeecCCeEEEeecCCCCcceEEE-eecCcccc-cCCCceEEEE
Q 002405 385 -LYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH-LNLPVSYI-SQNWPVQHVA 459 (927)
Q Consensus 385 -l~~~~~~~~~~v-~~~~~-~~~~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~-~~~~~I~~va 459 (927)
+.....-..+.. .+|+. |..-++.-.|+++..|++..+.. .+.|.. .++. .+++..|. +|...-....
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~---~~~g~~----~~~vi~kidV~yqpGh~~~~~g~t 394 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR---AYAGEK----VDPIKDKLDVHYQPGHLKTVMGET 394 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH---HHHTCS----CCCEEEEEECSSCEEEEEETTTTS
T ss_pred ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh---hhcccc----cceeEEEeecccccccceeccceE
Confidence 222222222222 55655 63334555677777788654210 000000 0000 11122222 2211111235
Q ss_pred EccCCCEEEEEeC---Cce-----------EEEEccCCcEEe
Q 002405 460 ASKDGMFLAVAGL---HGL-----------ILYDIRQKKWRV 487 (927)
Q Consensus 460 ~spdG~~la~ag~---dg~-----------i~wd~~s~~w~~ 487 (927)
++|||++|+++.+ |.+ .++|+.+++-++
T Consensus 395 ~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 395 LDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp TTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred eCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 6899999999865 444 578886665443
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.50 E-value=0.0022 Score=68.88 Aligned_cols=107 Identities=6% Similarity=0.044 Sum_probs=67.6
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
++...+++. +.+|+.++.+..||.+ +........ ....+.++...++|...+.. +.+..+| .++.
T Consensus 141 ~~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~ 205 (330)
T 3hxj_A 141 TPIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT--------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGT 205 (330)
T ss_dssp CCEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSC
T ss_pred eeEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec--------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCc
Confidence 566777777 5557888999999976 444444443 34567778888888866554 8999999 5555
Q ss_pred eEEEeccccccceecceecCCCCCCccccccc--ceeEEEcCCCceEEE
Q 002405 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYA 387 (927)
Q Consensus 341 ~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~ 387 (927)
........ ...+.++...+++ ..+++. ..+..++..+..++.
T Consensus 206 ~~~~~~~~-~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 206 EKWNFYAG-YWTVTRPAISEDG----TIYVTSLDGHLYAINPDGTEKWR 249 (330)
T ss_dssp EEEEECCS-SCCCSCCEECTTS----CEEEEETTTEEEEECTTSCEEEE
T ss_pred EEEEEccC-CcceeceEECCCC----eEEEEcCCCeEEEECCCCCEeEE
Confidence 55555433 3456777777665 444432 245555655444433
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.49 E-value=0.019 Score=63.50 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=42.7
Q ss_pred eEEEEEcCCCcEEEEEec-CCeEEEEeccCCCc--ceEEEeee-cCCCCCCC------CCCeeEEEECCCCCEEEEEE
Q 002405 259 AVCASIAPEQQILAVGTR-RGVVELYDLAESAS--LIRTVSLY-DWGYSMDD------TGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 259 ~v~v~~sp~~~~la~g~~-Dg~V~vwd~~~~~~--~~~~l~~~-~~~~~~~h------~~~V~~l~~spdg~~Lasg~ 326 (927)
+..+.+||||++|-++.. .+.|.+||+.+.+. .+..+... ... ...| .+.=..+++||||++|.++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~-~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH-RADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT-CBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec-cccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 338999999998777665 68999999975232 22222220 000 0001 11247899999999999987
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.47 E-value=0.019 Score=68.72 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=45.9
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeee-cCCCCCCCCCCeeEEEECC---CCCEEEEEE-----cCCcEEEEEcc
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTP---DNSAFAVGW-----KSRGLTVWSVS 337 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~-~~~~~~~h~~~V~~l~~sp---dg~~Lasg~-----~Dg~v~vW~~~ 337 (927)
.+..+.+++.||.+..+|..+ ++.+-..... + ......+..+| +|..++..+ .||.|..||..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~-------~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~ 191 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRAD-------HKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE 191 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEEEEEECCSC-------TTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT
T ss_pred ECCEEEEEccCCEEEEEECCC-CCEeeeecCcCC-------CCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECC
Confidence 356788889999999999988 7666554431 1 00111112223 565544333 36899999999
Q ss_pred CCeeEEEec
Q 002405 338 GCRLMSTIR 346 (927)
Q Consensus 338 ~~~~~~~l~ 346 (927)
+++++.++.
T Consensus 192 tG~~~W~~~ 200 (689)
T 1yiq_A 192 TGKEAWRFY 200 (689)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEec
Confidence 888877654
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.44 E-value=0.011 Score=70.76 Aligned_cols=75 Identities=9% Similarity=-0.002 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCeEEEEeccCCCcceEEEeee-cCCCCCCCCCCeeEEEECCCCCEEEEEEc------CCcEEEEEccCC
Q 002405 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGC 339 (927)
Q Consensus 267 ~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~-~~~~~~~h~~~V~~l~~spdg~~Lasg~~------Dg~v~vW~~~~~ 339 (927)
.+..+.+++.|+.+..+|..+ ++.+-++... ... ....+.+--.-.++. +.++.. ++.|..+|..++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~----~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAAT-GKEVWHQNTFEGQK----GSLTITGAPRVFKGK-VIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEEEEEETTTTCC----SSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEcCCCEEEEEECCC-CCEEeeecCCcCcC----cCcccccCcEEECCE-EEEEecccccCCCCEEEEEECCCC
Confidence 456788889999999999988 7766555541 100 001111100001444 444443 689999999988
Q ss_pred eeEEEecc
Q 002405 340 RLMSTIRQ 347 (927)
Q Consensus 340 ~~~~~l~~ 347 (927)
+++.++..
T Consensus 201 ~~~W~~~~ 208 (677)
T 1kb0_A 201 ERKWRWFS 208 (677)
T ss_dssp CEEEEEES
T ss_pred cEEEEecc
Confidence 88776653
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=0.44 Score=57.83 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=103.6
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
..| ++...++|.+. +|+.++-+..|+..+ +.. ..+.. ........|.++...++|...+ |..++++..++.
T Consensus 363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~-~~~-~~~~~----~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~ 434 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGK-RVA-IYNKE----NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNT 434 (781)
T ss_dssp SCEEEEEECTTSCEE-EEEBSSCEEEEETTE-EEE-ECC---------CCCSBEEEEEECTTSCEEE-EETTEEEEEECS
T ss_pred cceEEEEEcCCCCEE-EEeCCCcEEEEECCC-CeE-EEccC----CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcC
Confidence 456 88888888755 556566688888654 211 11110 0011356799999998887665 566678999998
Q ss_pred cCCeeEEEecc--ccccceecceecCCCCCCccccccc-ceeEEEcCCCceEEEEEcCC-----cceEEEEeccceeeec
Q 002405 337 SGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGS-----SERVLIFSFGKCCLNR 408 (927)
Q Consensus 337 ~~~~~~~~l~~--~~~~~v~s~~~sp~~~~~~~~l~sg-~~~~~W~~~~~~l~~~~~~~-----~~~v~~~~~~~~~~s~ 408 (927)
.+++.. .+.. .....|.++...+++ ..+++. .-+..+++.+++........ ...|..+
T Consensus 435 ~~~~~~-~~~~~~~~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--------- 500 (781)
T 3v9f_A 435 RLKKFQ-IIELEKNELLDVRVFYEDKNK----KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSI--------- 500 (781)
T ss_dssp SSCEEE-ECCSTTTCCCCEEEEEECTTS----EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEE---------
T ss_pred CCCcEE-EeccCCCCCCeEEEEEECCCC----CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEE---------
Confidence 766532 2221 112345555555554 443322 13444554443322211111 1122211
Q ss_pred ccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEe
Q 002405 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (927)
Q Consensus 409 s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~ 487 (927)
..|...++|.-.. ...++.+... ...+.....+..+ ....|.++..+++|+..+ |+.+|.+ .||..+++++.
T Consensus 501 ~~d~~g~lWigt~-~~Gl~~~~~~---~~~~~~~~~~~~l--~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 501 AQDSEGRFWIGTF-GGGVGIYTPD---MQLVRKFNQYEGF--CSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFDYQV 573 (781)
T ss_dssp EECTTCCEEEEES-SSCEEEECTT---CCEEEEECTTTTC--SCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCCCEE
T ss_pred EEcCCCCEEEEEc-CCCEEEEeCC---CCeEEEccCCCCC--CCCeeEEEEECCCCCEEE-EECCCceEEECCCCCcEEE
Confidence 1122222333211 1122222211 1112222111111 245689999999998555 5559994 99999888877
Q ss_pred eCC
Q 002405 488 FGD 490 (927)
Q Consensus 488 f~~ 490 (927)
|..
T Consensus 574 ~~~ 576 (781)
T 3v9f_A 574 FQR 576 (781)
T ss_dssp ECG
T ss_pred ccc
Confidence 753
No 239
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.42 E-value=0.02 Score=68.27 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=69.0
Q ss_pred ceEEEEEe-CCcEEEEeeecC-----------ccceeeeccccee------cCCCCeE-EEEEcCCCcEEEEEec-CCeE
Q 002405 221 RLLFVLYS-NGQLMSCSVSKK-----------GLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTR-RGVV 280 (927)
Q Consensus 221 ~~~~~~s~-dG~~~~~~~~d~-----------~~~~w~~~~~~~~------~~h~~~v-~v~~sp~~~~la~g~~-Dg~V 280 (927)
...+++.+ +|++++.++.+. .+..||..+.+-. ..+.... ++++.++++++++|+. ++.+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 34566677 999999887532 2445665443211 1122223 5778899999999984 4689
Q ss_pred EEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cC-----CcEEEEEccCCe
Q 002405 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-----RGLTVWSVSGCR 340 (927)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~D-----g~v~vW~~~~~~ 340 (927)
.+||..+ ..... +. ..+ ....-.+++..+||+.++.|+ .+ ..+.+||..++.
T Consensus 268 ~~yd~~t-~~W~~-~~--~~~----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSS-DSWIP-GP--DMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGG-TEEEE-CC--CCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcC-CceeE-CC--CCC----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9999876 32211 11 110 111113456678999999998 44 468999997764
No 240
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.40 E-value=0.075 Score=67.01 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=46.9
Q ss_pred CceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCC------ccEEEEEec-CcEEEE
Q 002405 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD------TKLIAVVTS-SLYLHI 93 (927)
Q Consensus 21 ~~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspD------g~~Lav~t~-dg~l~i 93 (927)
...|++.+.++..+++++.+.+..+..+ .+ .+....+ ..-.+++.|+.+.|. ++++|+|+. |++++|
T Consensus 513 ~~~I~~As~n~~~vvva~g~~l~~fel~-~~-~L~~~~~----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAVGRALYYLQIH-PQ-ELRQISH----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCCEEEECSSEEEEEETTEEEEEEEE-TT-EEEEEEE----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred CCEEEEEEeCCCEEEEEECCEEEEEEee-CC-ceeeecc----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence 3556666666666666666677777664 22 2332222 112467889999864 479999996 999999
Q ss_pred EEEE
Q 002405 94 FKVQ 97 (927)
Q Consensus 94 ~~l~ 97 (927)
+++.
T Consensus 587 ~sL~ 590 (1158)
T 3ei3_A 587 LKLP 590 (1158)
T ss_dssp EETT
T ss_pred EECC
Confidence 9985
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.33 E-value=0.032 Score=66.61 Aligned_cols=125 Identities=10% Similarity=0.143 Sum_probs=77.2
Q ss_pred eEEEEEcCCC---cEEEEEecCCeEEEEeccCCCcceEEEeeecCC-------------------------CCCCCCCC-
Q 002405 259 AVCASIAPEQ---QILAVGTRRGVVELYDLAESASLIRTVSLYDWG-------------------------YSMDDTGP- 309 (927)
Q Consensus 259 ~v~v~~sp~~---~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~-------------------------~~~~h~~~- 309 (927)
++.+....+| +.+++++.+|.+.++|..+ ++.+...+..... ..++..|.
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 4444555678 6899999999999999988 7766554421100 00000000
Q ss_pred -eeEEEECCCCCEEEEEEcC-------------------------------------------CcEEEEEccCCeeEEEe
Q 002405 310 -VSCIAWTPDNSAFAVGWKS-------------------------------------------RGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 310 -V~~l~~spdg~~Lasg~~D-------------------------------------------g~v~vW~~~~~~~~~~l 345 (927)
-..++++|++..+.+...+ |.|..||+.+++...+.
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 0257899998888776432 67999999999887776
Q ss_pred ccccccceecceecCCCCCCcccccccc---eeEEEcCCCceEEEEEc
Q 002405 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 346 ~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (927)
... ..+.+..+..++ ..+..+. .+..|+..+++++....
T Consensus 474 ~~~--~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 474 EHV--SPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EES--SSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCC--CCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeeee
Confidence 543 223333333333 3333232 77888888777666553
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.30 E-value=0.0017 Score=74.35 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=50.3
Q ss_pred EEEEEcCCCcEEEE-EecCCeEEEEeccCCCc------------ceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 260 VCASIAPEQQILAV-GTRRGVVELYDLAESAS------------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 260 v~v~~sp~~~~la~-g~~Dg~V~vwd~~~~~~------------~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
-++.++|||+++.+ +..+.+|.++|+++ .. ...... -...-..++|+|||....+..
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~---------vG~gP~h~aF~~dG~aY~t~~ 349 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPE---------LGLGPLHTAFDGRGNAYTSLF 349 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCB---------CCSCEEEEEECTTSEEEEEET
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcC---------CCCCcceEEECCCCeEEEEEe
Confidence 37999999997655 44678999999985 21 111111 123458899999996666777
Q ss_pred cCCcEEEEEccC
Q 002405 327 KSRGLTVWSVSG 338 (927)
Q Consensus 327 ~Dg~v~vW~~~~ 338 (927)
-|+.|.+||+..
T Consensus 350 ldsqV~kwdi~~ 361 (595)
T 1fwx_A 350 LDSQVVKWNIED 361 (595)
T ss_dssp TTTEEEEEEHHH
T ss_pred cCCcEEEEEhhH
Confidence 899999999976
No 243
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.09 E-value=0.026 Score=68.40 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=67.8
Q ss_pred EEEE-eCCcEEEEeeec-C----ccceeeeccc-ceecCCCC-eE-EEEEcCCCcEEEEEecC-----CeEEEEeccCCC
Q 002405 224 FVLY-SNGQLMSCSVSK-K----GLKLAEFIKI-DKELGSGD-AV-CASIAPEQQILAVGTRR-----GVVELYDLAESA 289 (927)
Q Consensus 224 ~~~s-~dG~~~~~~~~d-~----~~~~w~~~~~-~~~~~h~~-~v-~v~~sp~~~~la~g~~D-----g~V~vwd~~~~~ 289 (927)
..+| |||+.++...+. + ++.+++..++ +....+-. .. .++|+|||+.|+....| ..|.++++.+ +
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-~ 257 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-L 257 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-C
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-C
Confidence 4568 899877766543 2 3666776665 43222111 22 68999999988887776 2577778765 3
Q ss_pred cc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---CcEEEEEccCC
Q 002405 290 SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGC 339 (927)
Q Consensus 290 ~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D---g~v~vW~~~~~ 339 (927)
.. ...+... +......+.|||||++|+..+.+ ..+.++|+.++
T Consensus 258 ~~~~~lv~~~~-------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 258 QSEDVCLYEEH-------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp GGGCEEEEECC-------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred chhcEEEEecC-------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 22 2222221 23446788999999988876643 35677787664
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.05 E-value=0.012 Score=63.03 Aligned_cols=251 Identities=12% Similarity=0.008 Sum_probs=116.1
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCe
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~ 340 (927)
++.+.+++.+.+ |+.+ +..||. + ++....... ........... +..+.+++.++.+..+|.. ++
T Consensus 64 ~~~~~~~g~l~v-~t~~--l~~~d~-~-g~~~~~~~~--------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 64 RPSIGKDGTIYF-GSDK--VYAINP-D-GTEKWRFDT--------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp CCEETTTTEECC-SSCE--EEEECC-C-GGGGGGSCC-------------CCEEEE--TTEEEEECTTSEEEEECTT-SC
T ss_pred ceEEecCCcEEE-ecCc--EEEECC-C-CcEEEEEEC--------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC
Confidence 667777776544 4444 777775 3 433222211 11112222222 4456677788999999988 55
Q ss_pred eEEEeccccccceecceecCCCCCCccccccc--ceeEEEcCCCceEEEEEcCCcceE--EEEeccceeeecccCCCeee
Q 002405 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYA 416 (927)
Q Consensus 341 ~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~~s~s~d~~~~~ 416 (927)
........ ...+.++...+++ ..++.. ..+..++.. ++...........+ ..... ++ .+
T Consensus 128 ~~~~~~~~-~~~~~~~~~~~~g----~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~---------~g--~l 190 (330)
T 3hxj_A 128 EKWRFKTK-KAIYATPIVSEDG----TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK---------DG--TI 190 (330)
T ss_dssp EEEEEECS-SCCCSCCEECTTS----CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT---------TC--CE
T ss_pred EEEEEcCC-CceeeeeEEcCCC----EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC---------CC--EE
Confidence 55444433 3345566665555 444432 256667776 44333222211111 11111 11 12
Q ss_pred eeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCcccee
Q 002405 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ 495 (927)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~ 495 (927)
|... ..++.+. ......|+.. .....+.+++++++|...+ ++.++.+ .++........+.....
T Consensus 191 ~v~t---~~l~~~d--~~g~~~~~~~-------~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g~~~~~~~~~~~-- 255 (330)
T 3hxj_A 191 YFGS---DKVYAIN--PDGTEKWNFY-------AGYWTVTRPAISEDGTIYV-TSLDGHLYAINPDGTEKWRFKTGKR-- 255 (330)
T ss_dssp EEES---SSEEEEC--TTSCEEEEEC-------CSSCCCSCCEECTTSCEEE-EETTTEEEEECTTSCEEEEEECSSC--
T ss_pred EEEe---CEEEEEC--CCCcEEEEEc-------cCCcceeceEECCCCeEEE-EcCCCeEEEECCCCCEeEEeeCCCC--
Confidence 2111 2222222 1112233321 1224467788888886554 5555555 77764443222221110
Q ss_pred eeEEEEEEee-CCEEEEEEeecCCCeEEEEEeeCCCCCccceeEEEecCCccE---EEEccCCEEEEEEcCCeEEEEEEE
Q 002405 496 KIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI---VMDVYEDYILVTYRPFDVHIFHVK 571 (927)
Q Consensus 496 ~~~v~~~~W~-~~~li~~~~~~~~~~~~l~l~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~v~~~d~~i~l~~~~ 571 (927)
....+... ++.+.++. ....|..++.+ ....+...++...+ ..+ .++.|.+++.+|.+.+...+
T Consensus 256 --~~~~~~~~~~g~l~v~t-----~~ggl~~~d~~----g~~~~~~~~~~~~~~~~~~d-~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 256 --IESSPVIGNTDTIYFGS-----YDGHLYAINPD----GTEKWNFETGSWIIATPVID-ENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp --CCSCCEECTTSCEEEEC-----TTCEEEEECTT----SCEEEEEECSSCCCSCCEEC-TTCCEEEECTTSCEEEEEC-
T ss_pred --ccccceEcCCCeEEEec-----CCCCEEEECCC----CcEEEEEEcCCccccceEEc-CCCEEEEEcCCCeEEEEecc
Confidence 01122233 34444441 22345555442 23445554443221 222 45568888999998886554
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.02 E-value=0.075 Score=54.38 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=74.4
Q ss_pred CeE-EEEEcCCCcEEEEEecCC--eEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEE
Q 002405 258 DAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTV 333 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg--~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v~v 333 (927)
..+ .+.|+ ++.+..+++.+| .|+++|+++ ++.+..+.. . .........++|. ..++.+.++.+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l--------~-~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL--------G-KRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC--------C-TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec--------C-CccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 445 78888 778888888877 899999998 777776654 1 1222222233444 4455667899999
Q ss_pred EEccCCeeEEEeccccccceecceecCCCCCCccccccc-c-eeEEEcCCCceEEEEE
Q 002405 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~ 389 (927)
+|..+.+.+.++.-.+ ....+.+++ ...++|. + ++.++|+.+.+.....
T Consensus 112 ~D~~t~~~~~ti~~~~----eG~glt~dg---~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDG----EGWGLTHND---QYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp EETTTCCEEEEEECSS----CCCCEEECS---SCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred EECccCcEEEEEECCC----CceEEecCC---CEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 9999999988887532 112333444 1333332 2 6778888888776654
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.99 E-value=0.42 Score=49.16 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=57.0
Q ss_pred CeEEEEEcCCCcE-EEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v~v~~sp~~~~-la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.+..++++|+++. .++-...+.|.+++.+. ......+.. ...-..++.. ++...++.+.++.|.++|.
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~---------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG---------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC---------CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC---------CCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 4558999998655 45555668999999864 322222222 1122456543 3444444445689999999
Q ss_pred cCCeeEEEeccccccceecceecCCC
Q 002405 337 SGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+++...++..........+++.|++
T Consensus 237 ~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 237 AISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCCceEEEccccccccceeeecCcc
Confidence 98888887754312234556666665
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.86 E-value=0.094 Score=62.41 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=56.4
Q ss_pred EEEEcCCCcEEEEEecCCe-------------------EEEEeccCCCcceEEEeeec---CCCCCCCCCCeeEEEECCC
Q 002405 261 CASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPD 318 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~-------------------V~vwd~~~~~~~~~~l~~~~---~~~~~~h~~~V~~l~~spd 318 (927)
.++++|+..++.+++.++. |..+|.++ ++.+-.++... +.+. -..+........|
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~--~~~~~~~~d~~~~ 310 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFT--ATQQITLAELNID 310 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCC--CCSCEEEEEEEET
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCcccccc--CCCCcEEEEeccC
Confidence 6789999889999888774 88899887 76655554311 1000 1133333334457
Q ss_pred CC---EEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 319 NS---AFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 319 g~---~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
|+ .+++++.+|.+.++|..+++++...
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 76 7899999999999999988877544
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.82 E-value=0.17 Score=52.23 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=72.1
Q ss_pred EEEEcCCCcEEEEEec--CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 261 CASIAPEQQILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~--Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
.++|+|++.+.++.+. +++|++.|..+ ++.+..+.... +. ....+++. +++..++.+.++.+.++|..+
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~------~~-fgeGi~~~-g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDD------SY-FGEGLTLL-NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCT------TC-CEEEEEEE-TTEEEEEETTCSEEEEEETTT
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCC------Cc-ceEEEEEe-CCEEEEEEecCCEEEEEECCC
Confidence 7999998876666543 67999999998 77777665411 11 12234554 234556666789999999999
Q ss_pred CeeEEEeccccccceecceecCCCCCCcccccc-cc-eeEEEcCCCceEEEEEc
Q 002405 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT-SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 339 ~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~s-g~-~~~~W~~~~~~l~~~~~ 390 (927)
.+.+.++... .. ....+++++. ..+++ ++ ++.+.|+.+.+......
T Consensus 96 ~~v~~~i~~g-~~--~g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 96 LSNIKNFTHQ-MK--DGWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp TEEEEEEECC-SS--SCCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred CcEEEEEECC-CC--CeEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEEE
Confidence 9888887532 01 1233445551 22222 22 77778888877665543
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.78 E-value=0.027 Score=68.21 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=60.3
Q ss_pred cCCCC-eE-EEEEc-CCCcEEEEEecC-----CeEEEEeccCCC-cceE-EEeeecCCCCCCCCCCeeEEEECCCCCEEE
Q 002405 254 LGSGD-AV-CASIA-PEQQILAVGTRR-----GVVELYDLAESA-SLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 254 ~~h~~-~v-~v~~s-p~~~~la~g~~D-----g~V~vwd~~~~~-~~~~-~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (927)
.+|.- .+ ..+|| |||++||.+... .+|+++|+++ + +.+. .+.. ....++|||||+.|+
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-g~~~l~~~~~~-----------~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-PSQTIADKVSG-----------TNGEIVWGPDHTSLF 236 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-TTCCCCCCEEE-----------ECSCCEECSSTTEEE
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-CCEeCCccccC-----------ceeeEEEecCCCEEE
Confidence 34543 55 88999 999999976542 2599999987 4 3221 1111 134689999999888
Q ss_pred EEEcCC-----cEEEEEccCCee--EEEeccccccceecceecCCC
Q 002405 324 VGWKSR-----GLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 324 sg~~Dg-----~v~vW~~~~~~~--~~~l~~~~~~~v~s~~~sp~~ 362 (927)
....|. .|.++++.++.. ...+.+.......++.++|++
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg 282 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT 282 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC
Confidence 777652 477777766431 122222112234567788887
No 250
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.70 E-value=0.58 Score=49.99 Aligned_cols=120 Identities=8% Similarity=0.126 Sum_probs=68.1
Q ss_pred CCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 002405 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (927)
Q Consensus 256 h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW 334 (927)
+...+ .++++|+++++|++...+..+-+|-. +.....+.. .....+..++++|+|+.++++ .+|.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~-------~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s 230 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNR-------TTSRRLHNMGFTPDGRLWMIV-NGGKIAFS 230 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEEC-------CSSSCEEEEEECTTSCEEEEE-TTTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCC-------CCCCccceeEECCCCCEEEEe-CCceEEEe
Confidence 34456 89999999999887654444444321 222332222 145678999999999876554 56777776
Q ss_pred EccCCeeEEEeccc---cccceecceecCCCCCCcccccccc-eeEEEcCCCceEEEEE
Q 002405 335 SVSGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 335 ~~~~~~~~~~l~~~---~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (927)
+..+++....+... ....+.++++.+++ ..++.+. ..+.+..++++-+...
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~----~~~~~g~~g~i~~S~DgG~tW~~~ 285 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPN----EVWLAGGAGALLCSQDGGQTWQQD 285 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSS----CEEEEESTTCEEEESSTTSSCEEC
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCC----EEEEEeCCCeEEEeCCCCcccEEc
Confidence 54445444333211 11246667776654 5555443 2234555555555544
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.52 E-value=0.19 Score=51.81 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc---CCcEE
Q 002405 257 GDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLT 332 (927)
Q Consensus 257 ~~~v~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~---Dg~v~ 332 (927)
..+..++++|++ .+.++-..++.|.+++.+. .....+... ....-..++++|++..|..+.. .+.|.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~~-------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFDT-------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEEC-------CCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence 345599999975 4555556678999999864 222333210 1234589999997665555543 36788
Q ss_pred EEEccCCeeEEEeccccccceecceecCCC
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.++..+... ..+..........++++|++
T Consensus 150 ~~~~dg~~~-~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 150 TSHMDGTNR-RILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp EEETTSCCC-EEEECTTCSCEEEEEEETTT
T ss_pred EEecCCCCc-EEEEECCCCCCcEEEEcCCC
Confidence 888765432 22211112334556666654
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.49 E-value=0.14 Score=54.66 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=48.9
Q ss_pred EEEEcCCCcEEEEE-ecCCeEEEEeccCCC-cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc----------C
Q 002405 261 CASIAPEQQILAVG-TRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----------S 328 (927)
Q Consensus 261 ~v~~sp~~~~la~g-~~Dg~V~vwd~~~~~-~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~----------D 328 (927)
.++++|+++.|.++ +.++.|.+|+++... .....+.. ..+ ...+++.++|++.++... .
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--------CCC-CCCeEECCCCCEEEEecCcccccccCCCc
Confidence 68999999865544 667899999987411 11222222 123 577999999997777655 4
Q ss_pred CcEEEEEccCCeeEEEe
Q 002405 329 RGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l 345 (927)
+.|..+|..+ +.+..+
T Consensus 260 ~~v~~~d~~G-~~~~~~ 275 (322)
T 2fp8_A 260 PKGIKFDEFG-NILEVI 275 (322)
T ss_dssp EEEEEECTTS-CEEEEE
T ss_pred cEEEEECCCC-CEEEEE
Confidence 5677887754 444444
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.48 E-value=0.25 Score=52.55 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=57.6
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC-----CC--------CCCCeeEEEECC-CCCEEEEE
Q 002405 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-----MD--------DTGPVSCIAWTP-DNSAFAVG 325 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~-----~~--------h~~~V~~l~~sp-dg~~Lasg 325 (927)
-+++++++++++.++..++.|..|+... + ....+.... ... .+ ..+....+++.| +|+ |.++
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~-~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPN-S-GFVDFAYAS-PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTT-T-CEEEEEESC-TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCC-C-ceEEEeccc-ccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3688999999778888999999998764 3 233333210 000 00 013468899998 665 4455
Q ss_pred EcCCcEEEEEccCCeeEEEec----cccccceecceecC-CC
Q 002405 326 WKSRGLTVWSVSGCRLMSTIR----QISLSSISSPIVKP-NQ 362 (927)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~~~l~----~~~~~~v~s~~~sp-~~ 362 (927)
...+.+..++..++.. ..+. +......+.+++.+ ++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G 138 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG 138 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC
Confidence 4456688888776532 2221 11122355677777 65
No 254
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.40 E-value=0.91 Score=49.00 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=40.6
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcc-----eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 256 h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~-----~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
|..+..++| .+|.++++....+.|...+++..+.. ...+-. --+.+..+++.|||.+.++.+.
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--------~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--------GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--------SSCCEEEEEECTTSCEEEEECS
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--------cCCCeeEEEECCCCcEEEEEeC
Confidence 444557777 57787777777778888777642221 111111 2357899999999987776654
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.37 E-value=0.16 Score=52.34 Aligned_cols=149 Identities=11% Similarity=-0.002 Sum_probs=89.9
Q ss_pred EEEEeCCcEEEEeee--cCccceeeeccccee----c-CCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEe
Q 002405 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE----L-GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~--d~~~~~w~~~~~~~~----~-~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
+.+++||+++++++. ++.+...|..+++.. . .+.....+++.. +++.++...++.+.++|..+ .+.+.++.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t-~~v~~~i~ 103 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRT-LSNIKNFT 103 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTT-TEEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCC-CcEEEEEE
Confidence 345777877776543 467777777766543 1 222233555553 35666667889999999987 66676665
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecccc----ccceecceecCCCCCCccccccc
Q 002405 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS----LSSISSPIVKPNQDCKYEPLMSG 372 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~----~~~v~s~~~sp~~~~~~~~l~sg 372 (927)
.. . .. ....+|||+.|.++..++.+.+.|..+.+...++.-.. ....+.+.+. ++ ..++..
T Consensus 104 ~g----~---~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg----~lyvn~ 168 (266)
T 2iwa_A 104 HQ----M---KD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG----EVWANI 168 (266)
T ss_dssp CC----S---SS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT----EEEEEE
T ss_pred CC----C---CC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC----EEEEec
Confidence 41 0 11 13356789888887778999999999888777765320 1123344444 33 332221
Q ss_pred ---ceeEEEcCCCceEEEEE
Q 002405 373 ---TSMMQWDEYGYRLYAIE 389 (927)
Q Consensus 373 ---~~~~~W~~~~~~l~~~~ 389 (927)
..+..-|+.+++.....
T Consensus 169 ~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEE
Confidence 15556667666665554
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.33 E-value=0.39 Score=48.54 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=73.6
Q ss_pred CeE-EEEEcCCCcEEEEEecCC--eEEEEeccCCCcceEEEeeecCCCCCCCCCCee--EEEECCCCCEEEEEEcCCcEE
Q 002405 258 DAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLT 332 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg--~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~--~l~~spdg~~Lasg~~Dg~v~ 332 (927)
..+ .+.|++ +.+..+.+.+| .|+.+|+.+ ++.+..... .. ... .++.. +++.....+.++.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l--------~~-~~fgeGi~~~-~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEV--------PP-PYFGAGIVAW-RDRLIQLTWRNHEGF 88 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEEC--------CT-TCCEEEEEEE-TTEEEEEESSSSEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeC--------CC-CcceeEEEEe-CCEEEEEEeeCCEEE
Confidence 445 788887 67777777764 999999998 777776655 11 122 23332 245556677889999
Q ss_pred EEEccCCeeEEEeccccccceecceecCCCCCCccccccc-c-eeEEEcCCCceEEEEEc
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIEE 390 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~~ 390 (927)
++|..+.+++.++...+. ...+.+++ ...++|- + ++.++|+.+.+......
T Consensus 89 v~D~~tl~~~~ti~~~~~----Gwglt~dg---~~L~vSdgs~~l~~iDp~t~~~~~~I~ 141 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGE----GWALTSDD---SHLYMSDGTAVIRKLDPDTLQQVGSIK 141 (243)
T ss_dssp EEETTTTEEEEEEECSSC----CCEEEECS---SCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEECCcCcEEEEEeCCCC----ceEEeeCC---CEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence 999999999988875321 12333443 1233332 2 77788888877766553
No 257
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.22 E-value=1.8 Score=46.76 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=42.0
Q ss_pred CCCeEEEEEc-------CCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 256 SGDAVCASIA-------PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 256 h~~~v~v~~s-------p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
|..+..++|. .+|+++++....+.|...+++..+.....-... .+-.+.+..+++.|||.+.++.+
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----cCCCCCeeEEEECCCCcEEEEEe
Confidence 4445588883 578888887778888888887523221111110 01245789999999998776664
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.20 E-value=0.11 Score=61.90 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=50.1
Q ss_pred EEEEcC-CCcEEEEEecCC-----------eEEEEeccCCCcc--eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 261 CASIAP-EQQILAVGTRRG-----------VVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 261 ~v~~sp-~~~~la~g~~Dg-----------~V~vwd~~~~~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.+++.| ++++++.|+.++ .+.+||..+ ++. +..+.. .+.....++++.+||+.++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~~-------~~~~~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTVT-------KHDMFCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEEC-------SCCCSSCEEEECTTSCEEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC-CcEEeCcccCC-------CCCCccccccCCCCCCEEEeCC
Confidence 566777 899999988653 688899876 432 222211 1333345678899999999998
Q ss_pred c-CCcEEEEEccCCe
Q 002405 327 K-SRGLTVWSVSGCR 340 (927)
Q Consensus 327 ~-Dg~v~vW~~~~~~ 340 (927)
. +..+.+||..++.
T Consensus 262 ~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDS 276 (656)
T ss_dssp SSTTCEEEEEGGGTE
T ss_pred CCCCceEEecCcCCc
Confidence 4 4689999997764
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.11 E-value=2.6 Score=49.91 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=43.9
Q ss_pred CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC-CCCeeEEEECCCCCEEEEEEc------CCcEEEEEccCCe
Q 002405 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD-TGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR 340 (927)
Q Consensus 268 ~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h-~~~V~~l~~spdg~~Lasg~~------Dg~v~vW~~~~~~ 340 (927)
+..+.+++.||.|..+|..+ ++.+-............. ..++. .+|. ++++.. +|.|..+|..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-----VKGK-VIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-----ETTE-EEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-----ECCE-EEEeCCCCCcCCCCEEEEEECCCCc
Confidence 55778889999999999988 766655443110000001 11111 1454 444432 5889999999888
Q ss_pred eEEEec
Q 002405 341 LMSTIR 346 (927)
Q Consensus 341 ~~~~l~ 346 (927)
++.++.
T Consensus 190 ~~W~~~ 195 (668)
T 1kv9_A 190 LAWRFY 195 (668)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 877664
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=3.9 Score=49.31 Aligned_cols=212 Identities=14% Similarity=0.078 Sum_probs=104.7
Q ss_pred CCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecC--CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 257 ~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~--~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
...| ++...++|.+ =+|+.++-|..|+... . ....+..... ....-....|.++...++|... .|..++++..
T Consensus 312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNNI-WIGTWGGGINFISNAP-P-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCCE-EEEEBSSCEEEECSSC-C-SCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEE
T ss_pred CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCC-C-cceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEE
Confidence 3456 8888888874 4567667788888764 2 2222221000 0000124569999999888755 5666688999
Q ss_pred EEccCCeeEEEec--cccccceecceecCCCCCCccccccc--ceeEEEcCCCceEEEEEcC--CcceEEEEeccceeee
Q 002405 334 WSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCCLN 407 (927)
Q Consensus 334 W~~~~~~~~~~l~--~~~~~~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~--~~~~v~~~~~~~~~~s 407 (927)
++..++....-.. ......|.++...+++ ..++.. .-+..++..+++....... ....|.++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~------- 456 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY------- 456 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTS----CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE-------
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCC----CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE-------
Confidence 9986543221100 1112345666555554 444422 1344455544433221110 112222221
Q ss_pred cccCCCeeeeeeeecCCeEEEeecCCCCcceEEEeecCcccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEe
Q 002405 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487 (927)
Q Consensus 408 ~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~spdG~~la~ag~dg~i~wd~~s~~w~~ 487 (927)
.|....+|.-.. ..+..+..... .+...............|.++..+++|+..+....+|...||..+++++.
T Consensus 457 --~d~~g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 457 --EDKNKKIWIGTH--AGVFVIDLASK---KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp --ECTTSEEEEEET--TEEEEEESSSS---SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE
T ss_pred --ECCCCCEEEEEC--CceEEEeCCCC---eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE
Confidence 122222333211 22333321110 11111101100011357899999999986654334776699999988887
Q ss_pred eCC
Q 002405 488 FGD 490 (927)
Q Consensus 488 f~~ 490 (927)
+..
T Consensus 530 ~~~ 532 (781)
T 3v9f_A 530 FNQ 532 (781)
T ss_dssp ECT
T ss_pred ccC
Confidence 754
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.06 E-value=0.24 Score=50.65 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=73.4
Q ss_pred CeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCC-eeEEEECCCCCEEEEEEcCCcEEEEE
Q 002405 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWS 335 (927)
Q Consensus 258 ~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~-V~~l~~spdg~~Lasg~~Dg~v~vW~ 335 (927)
..+ .+.|+ ++.+..+.+.+|.|+++|+++ ++.+..+ . .... --.++... ++..++.+.++.+.++|
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~-l--------~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWME-R--------LGNIFAEGLASDG-ERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEE-E--------CTTCCEEEEEECS-SCEEEEESSSCEEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEE-C--------CCCcceeEEEEeC-CEEEEEEccCCEEEEEE
Confidence 344 77887 468888889999999999998 7777766 4 1111 12344443 34555677789999999
Q ss_pred ccCCeeEEEeccccccceecceecCCCCCCccccccc-c-eeEEEcCCCceEEEEE
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE 389 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~ 389 (927)
..+.+.+.++.-.+. ...+.+++ ...++|. + ++.++|+.+.+.....
T Consensus 123 ~~Tl~~~~ti~~~~e----GwGLt~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I 171 (268)
T 3nok_A 123 GMPPQRERTTRYSGE----GWGLCYWN---GKLVRSDGGTMLTFHEPDGFALVGAV 171 (268)
T ss_dssp TTTTEEEEEEECSSC----CCCEEEET---TEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred CCcCcEEEEEeCCCc----eeEEecCC---CEEEEECCCCEEEEEcCCCCeEEEEE
Confidence 999999888874311 12222333 1233332 2 7777888888776654
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.87 E-value=0.077 Score=54.30 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred CcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC
Q 002405 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (927)
Q Consensus 230 G~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (927)
++++...-.++.+.++|..+.+.. .--... ..+.++++.|..+..+++|.++|.++ .+.+.++.....+ ..
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g---~~ 179 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG--WGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRG---QP 179 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC--CCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETT---EE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce--eEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCC---cc
Confidence 345555545666667776655433 110111 22236677777766788999999887 6666666542210 01
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
-..++.+.|. ||+..|..+.+..|.+-|..+++...++.-
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 1245778888 898888888889999999999998887764
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.54 E-value=0.84 Score=48.02 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=48.9
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc--EEEEEcc
Q 002405 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG--LTVWSVS 337 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~--v~vW~~~ 337 (927)
-.++|+|+++++++-..++.|..||.+. .....+.. .+....++++|||+.+++....+. +..++..
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~~---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHATV---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEEC---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEeC---------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence 3789999999888877889998888753 33333322 346789999999997666554334 5556666
Q ss_pred CCee
Q 002405 338 GCRL 341 (927)
Q Consensus 338 ~~~~ 341 (927)
+++.
T Consensus 104 ~g~~ 107 (306)
T 2p4o_A 104 DGTV 107 (306)
T ss_dssp TSCE
T ss_pred CCeE
Confidence 6554
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.51 E-value=2.4 Score=49.30 Aligned_cols=80 Identities=11% Similarity=0.017 Sum_probs=46.1
Q ss_pred EEEcCCCcE----EEEEecCCeEEEEeccCCCcceEEEeeecCCCC-CCCCCCeeEEEECCCCCEEEEEE-----cCCcE
Q 002405 262 ASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW-----KSRGL 331 (927)
Q Consensus 262 v~~sp~~~~----la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~-~~h~~~V~~l~~spdg~~Lasg~-----~Dg~v 331 (927)
++++|.+.. |.+++.|+.+..+|..+ ++.+-.......... .-...++ + .+|..++.++ .+|.|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~ssP~--v---~~g~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGSTLTIAPY--V---VKDKVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCE--E---ETTEEEECCBCGGGTCCCEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccceeecCCE--E---ECCEEEEEecccccCCCCeE
Confidence 455554444 77888999999999988 665544333110000 0011111 1 1554443332 37899
Q ss_pred EEEEccCCeeEEEecc
Q 002405 332 TVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~ 347 (927)
..+|..+++++.++..
T Consensus 185 ~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 185 TAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEETTTCCEEEEEES
T ss_pred EEEECCCCcEEEEEcC
Confidence 9999998888766653
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.43 E-value=1.8 Score=45.37 Aligned_cols=108 Identities=9% Similarity=0.001 Sum_probs=59.3
Q ss_pred EEEEeCCcEEEEeeecCccceeeecccce-ecCCCCeE-EEEEcCCCcEEEEEecCC--eEEEEeccCCCcceEEEeeec
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-ELGSGDAV-CASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w~~~~~~~-~~~h~~~v-~v~~sp~~~~la~g~~Dg--~V~vwd~~~~~~~~~~l~~~~ 299 (927)
++++++|+++++...++.+..++...... ........ .+++.++++++++..... .|..++..+ ++. ..+....
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~-~~~~~~~ 114 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTV-ETLLTLP 114 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCE-EEEEECT
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeE-EEEEeCC
Confidence 45567777777665666666555432111 11112234 899999999766654332 355556554 443 2222210
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCC
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~ 339 (927)
....-..++..+++..+++-..++.|.++|..++
T Consensus 115 ------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 115 ------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp ------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred ------CccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 1222345555666665665555788888887654
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.32 E-value=0.32 Score=49.20 Aligned_cols=147 Identities=11% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCC
Q 002405 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (927)
Q Consensus 229 dG~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~ 305 (927)
+++++...-.++.+.++|..+.+.. ..-.....+ .++++.|.++..+++|.++|..+ .+.+.++.....+.
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~--- 147 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR--- 147 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc---
Confidence 3555665555666777776655433 111112223 35666666556688999999887 66666665422100
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccceeEEEcCCCceE
Q 002405 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRL 385 (927)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l 385 (927)
--..++.+.|. +|+..|..+.+..|.+-|..+++....+.-.+.. |........-...-.-+.|++++.++
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~--------~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV--------PDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS--------TTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc--------cccccccCCcCCceEEEEEcCCCCEE
Confidence 01345677876 8888888888899999999999988877643111 11000000000111556788888787
Q ss_pred EEEEc
Q 002405 386 YAIEE 390 (927)
Q Consensus 386 ~~~~~ 390 (927)
+.+.+
T Consensus 219 fVTGK 223 (243)
T 3mbr_X 219 FVTGK 223 (243)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 77654
No 267
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.29 E-value=9.2 Score=48.10 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=65.6
Q ss_pred ceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
+.++.+++.|-.++.......+..|.... ...+ .++.+. .+++.++ ++.+.++++++ +.... ....+
T Consensus 484 ~~ivQVt~~~Irli~~~~~~~~~~w~~p~-------~~~I~~As~n~--~~vvva~-g~~l~~fel~~-~~L~~-~~~~~ 551 (1158)
T 3ei3_A 484 QQLIQITSASVRLVSQEPKALVSEWKEPQ-------AKNISVASCNS--SQVVVAV-GRALYYLQIHP-QELRQ-ISHTE 551 (1158)
T ss_dssp TEEEEEESSCEEEEESSSCCEEEEECCTT-------CCCCCEEEECS--SEEEEEE-TTEEEEEEEET-TEEEE-EEEEE
T ss_pred CeEEEEecCEEEEEECCCCeEEEEEECCC-------CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeC-Cceee-ecccC
Confidence 45677778777665433222333443221 2334 666664 3566664 68888888876 43222 22222
Q ss_pred CCCCCCCCCCeeEEEECCC------CCEEEEEEc-CCcEEEEEccCCeeEE
Q 002405 300 WGYSMDDTGPVSCIAWTPD------NSAFAVGWK-SRGLTVWSVSGCRLMS 343 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spd------g~~Lasg~~-Dg~v~vW~~~~~~~~~ 343 (927)
-.+.|.|+++.|. +.++|+|.. |++++|+++.+-+.+.
T Consensus 552 ------l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 552 ------MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp ------CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred ------CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 3567999999873 479999996 9999999998655443
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.97 E-value=3.7 Score=44.02 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=54.3
Q ss_pred CeEEEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEE-EEEEcC-CcEEEE
Q 002405 258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKS-RGLTVW 334 (927)
Q Consensus 258 ~~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~L-asg~~D-g~v~vW 334 (927)
.+..+++.+. +.+..+-...+.|.+.+.+. .....+... .-..-..+++.|++..| .+-+.+ +.|...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~-------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLWQ-------SLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECT-------TCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEeC-------CCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 3447889885 55556666678999999864 333333220 23445899999965544 444444 677777
Q ss_pred EccCCeeEEEeccccccceecceecCCC
Q 002405 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
++.+... ..+...+...-+.++++|++
T Consensus 188 ~~dG~~~-~~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 188 SMDGSGR-RIIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp ETTSCSC-EESCCSSCSCEEEEEEETTT
T ss_pred eCCCCCc-EEEEECCCCCcceEEEeCCC
Confidence 7766432 22211113334556666543
No 269
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.93 E-value=0.12 Score=52.87 Aligned_cols=111 Identities=13% Similarity=0.222 Sum_probs=71.8
Q ss_pred CcEEEEeeecCccceeeeccccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCC
Q 002405 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (927)
Q Consensus 230 G~~~~~~~~d~~~~~w~~~~~~~~---~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (927)
+++++..-.++.+.++|..+.+.. .--... ..++++++.|.....+++|.++|..+ .+.+.++.....+ ..
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g---~~ 170 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHG---EE 170 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETT---EE
T ss_pred CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCC---cc
Confidence 455555555777777887665443 100111 23335677666655678899999887 6666665542100 00
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
-..++.+.|. ||+..|..+.++.|.+.|..+++...++..
T Consensus 171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 1335668887 898888888889999999999998887764
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.89 E-value=4.9 Score=46.38 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCc---EEEEEecCCeEEEEeccCCCcceEEEe
Q 002405 258 DAVCASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 258 ~~v~v~~sp~~~---~la~g~~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
.++-+...++|+ .++.++.+|.+.+.|..+ ++.+...+
T Consensus 303 ~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~ 343 (571)
T 2ad6_A 303 QMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEK 343 (571)
T ss_dssp CCEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CCEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeec
Confidence 334344446784 678899999999999987 66655443
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.63 E-value=5.5 Score=42.20 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=69.2
Q ss_pred ccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccC
Q 002405 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (927)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~ 287 (927)
..+.++.+++ ... .+...+|.++. +.|+. +.|...... ..+...+ .+++.++++.+|++. +|. +|.-.+
T Consensus 80 ~~~~~i~~~~-~~~-~~~g~~g~i~~--S~DgG-~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~-~g~--v~~S~D 149 (327)
T 2xbg_A 80 YRFNSVSFQG-NEG-WIVGEPPIMLH--TTDGG-QSWSQIPLD--PKLPGSPRLIKALGNGSAEMITN-VGA--IYRTKD 149 (327)
T ss_dssp CEEEEEEEET-TEE-EEEEETTEEEE--ESSTT-SSCEECCCC--TTCSSCEEEEEEEETTEEEEEET-TCC--EEEESS
T ss_pred ccEEEEEecC-CeE-EEEECCCeEEE--ECCCC-CCceECccc--cCCCCCeEEEEEECCCCEEEEeC-Ccc--EEEEcC
Confidence 3566777754 222 23345564443 44432 235433210 1122334 777777788887764 554 333333
Q ss_pred CCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE-EEccCCeeEEEeccccccceecceecCCC
Q 002405 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV-WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v-W~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+........ .+.+.+.+++++|++.+++++.. |.+.. +|- ++.....+.......+..+++.+++
T Consensus 150 gG~tW~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g 216 (327)
T 2xbg_A 150 SGKNWQALVQ-------EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDG 216 (327)
T ss_dssp TTSSEEEEEC-------SCCCCEEEEEECTTSCEEEEETT-SSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTS
T ss_pred CCCCCEEeec-------CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCC-CCCceeECCCCCCCccceeEECCCC
Confidence 3444333332 14567899999999998877754 44433 332 2333332222113456666676665
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.58 E-value=4.1 Score=44.40 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=53.4
Q ss_pred eEEEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcC-CcEEEEE
Q 002405 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS-RGLTVWS 335 (927)
Q Consensus 259 ~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~D-g~v~vW~ 335 (927)
+..+++.+. +.+..+-...+.|.+.+++. .....+... .-..-..+++.|++..|..+ +.+ +.|...+
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~~-------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLWQ-------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEECS-------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeecC-------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 346888875 45555656677888888763 333333220 23456889999976655544 344 5677777
Q ss_pred ccCCeeEEEeccccccceecceecCCC
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
..+.......... ...-+.++++|++
T Consensus 232 ~dG~~~~~~~~~~-~~~PnGlavd~~~ 257 (386)
T 3v65_B 232 MDGSGRRIIADTH-LFWPNGLTIDYAG 257 (386)
T ss_dssp TTSCSCEEEECSS-CSCEEEEEEEGGG
T ss_pred CCCCCcEEEEECC-CCCeeeEEEeCCC
Confidence 7664322222211 3334556666543
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=7.1 Score=43.22 Aligned_cols=95 Identities=4% Similarity=0.012 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCcEEEEEec-CC----eEEEEeccCCCcce--EEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcC
Q 002405 257 GDAVCASIAPEQQILAVGTR-RG----VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS 328 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~-Dg----~V~vwd~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~D 328 (927)
..+..++|+++++.|.++.. ++ .+.+++.+ +... ..+.. ......++++| +|..+++-..+
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~~~~l~~---------~~~p~giavdp~~g~lyv~d~~~ 247 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKVITELTK---------GQNCNGAETHPINGELYFNSWNA 247 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCSEEEEEE---------CSSCCCEEECTTTCCEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceeeeeeecc---------CCCceEEEEeCCCCEEEEEECCC
Confidence 34558999999995444443 22 23333332 3322 23332 12246788999 77777777777
Q ss_pred CcEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
+.|..++..++.............-..++++|++
T Consensus 248 ~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 248 GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence 8999999987654222211112334568888887
No 274
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.29 E-value=0.28 Score=53.50 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=52.5
Q ss_pred EEEEecCeEEEEEccCeEEEeecCCce-----------eEEEEEeeChHhhhhcccccEEEEcCCc---cEEEEEecCcE
Q 002405 25 IYFKVNNGLLLIASPCHIELWSSSQHK-----------VRLGKYKRDSESVQREGENLQAVWSPDT---KLIAVVTSSLY 90 (927)
Q Consensus 25 v~fs~dg~lla~~~~~~v~IW~~~~~~-----------~~l~~~~r~~~sl~~~G~~~~v~wspDg---~~Lav~t~dg~ 90 (927)
+..||+|++||..++.+|.|-...-+. .+...+.-.+.......++..+.|+|-| ..|++-++|+.
T Consensus 71 lvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp EEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred EEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 779999999999999999998773111 1111222111111124678899999966 58999999999
Q ss_pred EEEEEEEe
Q 002405 91 LHIFKVQI 98 (927)
Q Consensus 91 l~i~~l~~ 98 (927)
||+||+..
T Consensus 151 Ir~yDl~~ 158 (452)
T 3pbp_A 151 ITMFDILN 158 (452)
T ss_dssp EEEEETTC
T ss_pred EEEEEccc
Confidence 99999975
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.05 E-value=8.6 Score=39.05 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=54.7
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC-CCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 002405 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (927)
Q Consensus 255 ~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~v 333 (927)
+..+.-.+++.+++.++++.-.++.+.++++...+. +........+. ........-.|+|+|+++.|.++.+.....|
T Consensus 68 g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i 146 (255)
T 3qqz_A 68 FVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEV 146 (255)
T ss_dssp SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEE
T ss_pred CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceE
Confidence 334544888999998777766778999999876332 22222222221 1123455789999999988888887767777
Q ss_pred EEcc
Q 002405 334 WSVS 337 (927)
Q Consensus 334 W~~~ 337 (927)
|.+.
T Consensus 147 ~~~~ 150 (255)
T 3qqz_A 147 YKVN 150 (255)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7775
No 276
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.80 E-value=12 Score=40.03 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=36.1
Q ss_pred CCeEEEEEcCC----CcEEEEEecC-----CeEEEEeccCCCcc--e-EEEeeecCCCCCCCCCCeeEEEECCCCCEEEE
Q 002405 257 GDAVCASIAPE----QQILAVGTRR-----GVVELYDLAESASL--I-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (927)
Q Consensus 257 ~~~v~v~~sp~----~~~la~g~~D-----g~V~vwd~~~~~~~--~-~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (927)
..+..++++|+ +.+.++-+.+ +.|..|+.+. +.. . ..+..........|.+ ..++|.|||.+.++
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~-~~~~~~~~l~~~~p~~~~~~h~~--~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG-ERGVLDRVVLDGIPARPHGLHSG--GRIAFGPDGMLYVT 151 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS-SCEEEEEEEEEEECCCTTCCCCC--CCEEECTTSCEEEE
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC-CCcCceEEEEEeCCCCCCCCcCC--ceEEECCCCCEEEE
Confidence 34559999998 4444443432 5677777764 321 1 1122111001122443 57999999986666
Q ss_pred EE
Q 002405 325 GW 326 (927)
Q Consensus 325 g~ 326 (927)
-+
T Consensus 152 ~G 153 (352)
T 2ism_A 152 TG 153 (352)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=92.66 E-value=9.4 Score=41.47 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=56.0
Q ss_pred CCCCeEEEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEE-EEEEcCCcEE
Q 002405 255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLT 332 (927)
Q Consensus 255 ~h~~~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~L-asg~~Dg~v~ 332 (927)
+...+..++|++. +.++.+-...+.|..++.+. +. ...+-.. .......+++.+.+..| ++-...+.|.
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~-~~~~~~~-------~~~~p~glavd~~~g~lY~~d~~~~~I~ 184 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG-SN-VEEVVST-------GLESPGGLAVDWVHDKLYWTDSGTSRIE 184 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CC-EEEEECS-------SCSCCCCEEEETTTTEEEEEETTTTEEE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CC-cEEEEeC-------CCCCccEEEEEeCCCeEEEEcCCCCeEE
Confidence 3445669999975 55555656778899898864 32 3222220 12234678888865544 4444567888
Q ss_pred EEEccCCeeEEEeccccccceecceecCCC
Q 002405 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
+.+..+......+... ......++++|.+
T Consensus 185 ~~~~dg~~~~~l~~~~-l~~P~giavdp~~ 213 (386)
T 3v65_B 185 VANLDGAHRKVLLWQS-LEKPRAIALHPME 213 (386)
T ss_dssp ECBTTSCSCEEEECSS-CSCEEEEEEETTT
T ss_pred EEeCCCCceEEeecCC-CCCCcEEEEEcCC
Confidence 8888765432222221 3334555565543
No 278
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.37 Score=45.85 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=46.1
Q ss_pred cCChHHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhHh
Q 002405 864 AGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVS 924 (927)
Q Consensus 864 ~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~r 924 (927)
+-+|..=|+.+|+.|+++.|..++.-+ .+..+|.+|.+.||.+++.++|.+-.+
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 446777799999999999999997644 457899999999999999999987543
No 279
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.12 E-value=18 Score=38.53 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=36.6
Q ss_pred eEEEEEecCeEEEEEc-cCeEEEeecCCceeEEEEEeeChH-hhhhcccccEEEEcCC---ccEEEEE
Q 002405 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPD---TKLIAVV 85 (927)
Q Consensus 23 ~iv~fs~dg~lla~~~-~~~v~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wspD---g~~Lav~ 85 (927)
.-++|.|||++|++-. .+.|.+++.+ .+.. ........ .....+....++++|| +..|.+.
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~-~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAK-TGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTT-TCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECC-CCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 3488999999988876 7888888753 2221 11211111 1122455679999996 4455543
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=91.10 E-value=18 Score=38.52 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCcEE-EEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v~v~~sp~~~~l-a~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.+..++++|++..| .+=+..+.|..++++. ...+.+-.. ..+.-..|++ .++....+-+..+.|...+.
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG--~~~~~~~~~-------~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQ-------GLPHPFAITV-FEDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCC--CceEEEEeC-------CCCCceEEEE-ECCEEEEecCCCCeEEEEEc
Confidence 45589999865554 4445567899999864 333333220 2233466777 45566666666778888875
Q ss_pred cCCeeEEEec
Q 002405 337 SGCRLMSTIR 346 (927)
Q Consensus 337 ~~~~~~~~l~ 346 (927)
.++.....+.
T Consensus 274 ~~G~~~~~i~ 283 (349)
T 3v64_C 274 FTGKNQEIIR 283 (349)
T ss_dssp TTCCSCEEEE
T ss_pred cCCCccEEec
Confidence 5555444443
No 281
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.40 E-value=4.5 Score=44.10 Aligned_cols=181 Identities=10% Similarity=0.067 Sum_probs=91.6
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCcceEEEeeec-CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEE
Q 002405 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (927)
Q Consensus 266 p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~ 344 (927)
.+|.-+.+ ..++.||.-++.+ ...-+.++... . --+.|..+..||+|++||..+. .+|.|-.+..+.....
T Consensus 30 ~n~t~i~~-a~~n~iR~~~i~~-~~~Yk~L~~~~~i-----~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 30 QNGTRIVF-IQDNIIRWYNVLT-DSLYHSLNFSRHL-----VLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp TTTTEEEE-EETTEEEEEETTT-CSSCEEEECTTTC-----CCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCC
T ss_pred cCCCEEEE-EECCEEEEEECCC-CCcceEEecCccc-----ccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCc
Confidence 34444444 3457888888775 33455555410 0 0235788999999999999976 6899988863210000
Q ss_pred eccccccceecceecCCCCCCcccccccceeEEEcCCCceEEEEEcCCcceEEEEeccceeeecccCCCeeeeeeeecCC
Q 002405 345 IRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGED 424 (927)
Q Consensus 345 l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~s~d~~~~~w~~~~~~~ 424 (927)
.....+.+..-.|.-+. .. ..-.+...-.+|.+-+.. +..++.--.|+++++|++....+
T Consensus 102 -~~~~~~~~q~~ty~l~~-~~-~~~~s~I~qVlWHPl~~~-----------------ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 102 -DVSIQDAFQIFHYSIDE-EE-VGPKSSIKKVLFHPKSYR-----------------DSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp -CHHHHHTTEEEEEEGGG-CC---CCCCEEEEEECTTBGG-----------------GCEEEEEETTSCEEEEETTCTTS
T ss_pred -ccccccccceeEEEcCC-cc-cCCCCceeEEEeccccCC-----------------CCeEEEEecCCEEEEEEcccCCC
Confidence 00000000000000000 00 000011234455554321 22344445567778887765332
Q ss_pred eEEEeecCCCCcceEEEeecCc--ccccCCCceEEEEEccCCCEEEEEe--CCceE--EEEccCCcEE
Q 002405 425 RLLVVQSEDTDELKILHLNLPV--SYISQNWPVQHVAASKDGMFLAVAG--LHGLI--LYDIRQKKWR 486 (927)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~I~~va~spdG~~la~ag--~dg~i--~wd~~s~~w~ 486 (927)
+-.... +... ........|.+++|.++|-.|.+.+ +.|-+ +|-....+|.
T Consensus 162 ~P~~L~------------k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~ 217 (452)
T 3pbp_A 162 KPIVLN------------KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLL 217 (452)
T ss_dssp CCEEES------------CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEE
T ss_pred CCcchh------------ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCccccc
Confidence 100000 0000 1112335689999999998777755 88877 7766666765
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=89.75 E-value=19 Score=36.52 Aligned_cols=218 Identities=8% Similarity=0.018 Sum_probs=112.9
Q ss_pred CceEEEEEecCe-EEEEE-ccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002405 21 SQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (927)
Q Consensus 21 ~~~iv~fs~dg~-lla~~-~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~ 98 (927)
..+-+++.|++. ++|+. .++.|...|.. +..+.... +...+..-.|++.+++.+.++.-.++.+.++++..
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~-----l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP-----LDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE-----CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe-----cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 466699999854 55544 34566666663 33333221 12234556899999998666655667888888864
Q ss_pred cCceeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcc
Q 002405 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (927)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~ 178 (927)
...... +... .+............-.++.+.++.++++.......++.|++..... . ..
T Consensus 101 ~~~i~~----------~~~~--~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~-~--------l~ 159 (255)
T 3qqz_A 101 NSEVKI----------LKKI--KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN-E--------LH 159 (255)
T ss_dssp TCCEEE----------EEEE--ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-C--------CE
T ss_pred CCeeee----------eeee--ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-c--------ee
Confidence 331000 0000 0000000011111223555666788888876666666676321110 0 00
Q ss_pred cccccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccc-eeeecccce--ecC
Q 002405 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDK--ELG 255 (927)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~w~~~~~~~--~~~ 255 (927)
+...+... .......+..++|+|..+.+..++..++.++.-..++.+. .+.+..+.. ...
T Consensus 160 i~~~~~~~-----------------~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~ 222 (255)
T 3qqz_A 160 ISKDKALQ-----------------RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHN 222 (255)
T ss_dssp EEECHHHH-----------------HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSC
T ss_pred eecchhhc-----------------cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccc
Confidence 00000000 0001122456788888888888888888777655555533 333332210 012
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEe
Q 002405 256 SGDAVCASIAPEQQILAVGTRRGVVELYD 284 (927)
Q Consensus 256 h~~~v~v~~sp~~~~la~g~~Dg~V~vwd 284 (927)
+..+-.++|.++|++.++ ++-..+.+|.
T Consensus 223 ~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 223 IKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 334558999999997776 5555554443
No 283
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=89.73 E-value=13 Score=39.28 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=47.9
Q ss_pred EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCC--CCCCCCeeEEEE---CCCCCEEEEEEc-------
Q 002405 261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS--MDDTGPVSCIAW---TPDNSAFAVGWK------- 327 (927)
Q Consensus 261 ~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~--~~h~~~V~~l~~---spdg~~Lasg~~------- 327 (927)
+++|.++ +.+.++.-..|+|..|+... +..... ... +.+ ......+..|.| -|+|+++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecC--CccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 6889885 44555544799999999864 333222 210 001 011224589999 689888886442
Q ss_pred ------CCcEEEEEcc---CCeeE
Q 002405 328 ------SRGLTVWSVS---GCRLM 342 (927)
Q Consensus 328 ------Dg~v~vW~~~---~~~~~ 342 (927)
++.+..+|+. +++.+
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~ 116 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPV 116 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCS
T ss_pred ccccCCCCEEEEEcCCcCCCCCEE
Confidence 5678888987 45443
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=88.08 E-value=9.8 Score=42.03 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=48.5
Q ss_pred eEEEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcCCcEEEEEc
Q 002405 259 AVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSV 336 (927)
Q Consensus 259 ~v~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~Dg~v~vW~~ 336 (927)
+..++++| ++.++++-..++.|..++.+. +......... ....-..++|+|+|++|..+ ...+.|..++.
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~-------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQ-------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECS-------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcC-------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence 33688999 788877777888999999875 3221222210 11335789999999955554 45678888887
Q ss_pred cC
Q 002405 337 SG 338 (927)
Q Consensus 337 ~~ 338 (927)
.+
T Consensus 300 d~ 301 (430)
T 3tc9_A 300 DW 301 (430)
T ss_dssp ET
T ss_pred Cc
Confidence 64
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=88.00 E-value=52 Score=39.38 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=57.6
Q ss_pred CeEEEEEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cC-CcEEEE
Q 002405 258 DAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVW 334 (927)
Q Consensus 258 ~~v~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~D-g~v~vW 334 (927)
.+..+|+.+.+ ++..+-...+.|.+.+++. ....++-.. .-.....|++.|.+..|..+. .+ +.|.+.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l~~~-------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEEEEeC-------CCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 34478998876 5555666778999999864 344444321 234568999999755555443 33 678888
Q ss_pred EccCCeeEEEeccccccceecceecCCC
Q 002405 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
++.|......+... ...-+.+++++..
T Consensus 543 ~~dG~~~~~lv~~~-l~~P~GLavD~~~ 569 (791)
T 3m0c_C 543 GLNGVDIYSLVTEN-IQWPNGITLDLLS 569 (791)
T ss_dssp ETTSCCEEEEECSS-CSCEEEEEEETTT
T ss_pred ecCCCceEEEEeCC-CCCceEEEEecCC
Confidence 88765433322222 3445566666543
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=87.68 E-value=16 Score=42.20 Aligned_cols=77 Identities=5% Similarity=-0.082 Sum_probs=42.4
Q ss_pred cEEEEEec-CCeEEEEec-cCCCcceEEEeeecCCCCC---CCCCCeeEEEECCCCCE----EEEEEcCCcEEEEEccCC
Q 002405 269 QILAVGTR-RGVVELYDL-AESASLIRTVSLYDWGYSM---DDTGPVSCIAWTPDNSA----FAVGWKSRGLTVWSVSGC 339 (927)
Q Consensus 269 ~~la~g~~-Dg~V~vwd~-~~~~~~~~~l~~~~~~~~~---~h~~~V~~l~~spdg~~----Lasg~~Dg~v~vW~~~~~ 339 (927)
..+.+++. ++.|.-+|. .+ ++.+-+.......... ........++.+|++.. +.+++.|+.+..+|..++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~t-G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDP-GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEeCCCCEEEEEeCCCC-CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 34445555 677777777 66 5544333321100000 00000123455554444 788888999999999888
Q ss_pred eeEEEec
Q 002405 340 RLMSTIR 346 (927)
Q Consensus 340 ~~~~~l~ 346 (927)
+.+.+..
T Consensus 142 ~~~W~~~ 148 (599)
T 1w6s_A 142 ETVWKVE 148 (599)
T ss_dssp CEEEEEE
T ss_pred CEEEeec
Confidence 8776654
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=87.05 E-value=38 Score=36.78 Aligned_cols=95 Identities=9% Similarity=-0.015 Sum_probs=56.0
Q ss_pred CeEEEEEcC-CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-c-CCcEEEE
Q 002405 258 DAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVW 334 (927)
Q Consensus 258 ~~v~v~~sp-~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~-Dg~v~vW 334 (927)
.+..+++.+ .+.+..+-...+.|.+.+++. .....+-.. .-.....|+..|.+..|..+. . .+.|...
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~-------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEEC-------SSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeC-------CCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 444899998 455666666778999998864 333333220 233468999999666555444 3 3678888
Q ss_pred EccCCeeEEEeccccccceecceecCCC
Q 002405 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
++.|.......... ...-+.+++++++
T Consensus 231 ~~dG~~~~~~~~~~-l~~P~glavd~~~ 257 (400)
T 3p5b_L 231 GLNGVDIYSLVTEN-IQWPNGITLDLLS 257 (400)
T ss_dssp ETTSCSCEEEECSS-CSCEEEEEEETTT
T ss_pred eCCCCccEEEEECC-CCceEEEEEEeCC
Confidence 88765332222221 3344556666554
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=86.49 E-value=43 Score=36.84 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=45.6
Q ss_pred eEEEEE---------cCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec----CCCCCC------CCCCeeEEEEC-CC
Q 002405 259 AVCASI---------APEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----WGYSMD------DTGPVSCIAWT-PD 318 (927)
Q Consensus 259 ~v~v~~---------sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~----~~~~~~------h~~~V~~l~~s-pd 318 (927)
+..+++ .+++.+.++-+.++.|+.++. + + .+.++.+.. .++..+ .-..-..|+++ ++
T Consensus 337 P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~-G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 413 (433)
T 4hw6_A 337 PNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E-G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR 413 (433)
T ss_dssp EEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T-S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred CccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C-C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence 446888 778888888777889999884 2 4 344444321 111100 11224689999 56
Q ss_pred CCEEEEEEcCCcEEEEEc
Q 002405 319 NSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 319 g~~Lasg~~Dg~v~vW~~ 336 (927)
|.++++=..++.|+..++
T Consensus 414 g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 414 KCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TEEEEEEGGGTEEEEEEE
T ss_pred CEEEEEeCCCCEEEEEec
Confidence 666665555677777665
No 289
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=86.47 E-value=31 Score=35.30 Aligned_cols=65 Identities=18% Similarity=0.380 Sum_probs=38.1
Q ss_pred CCCEEEEEeCCc-----eE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 463 dG~~la~ag~dg-----~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
+++.++.||.++ .+ .||..+++|........... ........+.++++++.........+..|+.
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC-YVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc-ceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 778888888753 45 89999999998765433221 1222333445555554433223355666665
No 290
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=86.05 E-value=4.7 Score=46.57 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=41.4
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
+|.+..||..+ ++.+-+... ..++.+......|..+.+++.||.+.++|..+++++.+++.
T Consensus 443 ~g~l~a~D~~t-G~~~W~~~~---------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTT-GKAKWTKWE---------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTT-CCEEEEEEE---------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCC-CCEEEEecC---------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 47888888877 655544443 12222222333566777799999999999999988877764
No 291
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=85.54 E-value=41 Score=35.76 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=43.9
Q ss_pred CCCeEEEEEcC-------CCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 256 SGDAVCASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 256 h~~~v~v~~sp-------~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
|..+..++|.. ++++++.....+.|...+++. ++........ ..-.+.+..+++.|||.+.++...
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~-----~~~~~rp~~v~~~pdG~lyv~td~- 342 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG-DKVTEDGRIL-----TDRGQRIRDVRTGPDGYLYVLTDE- 342 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET-TEEEEEEEES-----GGGCCCEEEEEECTTSCEEEEECS-
T ss_pred CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC-CeEeeeEEcc-----cCCCCceeEEEECCCCcEEEEEeC-
Confidence 33444777763 578888777788888888764 4322221110 012357899999999986665432
Q ss_pred CcEEEEEc
Q 002405 329 RGLTVWSV 336 (927)
Q Consensus 329 g~v~vW~~ 336 (927)
..=+||.+
T Consensus 343 ~~g~I~ri 350 (353)
T 2g8s_A 343 SSGELLKV 350 (353)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 22345543
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=85.51 E-value=51 Score=36.86 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred CCCcEEEEEecCCeEEEEeccCCCcceEEEeeec----------CCCCCC------CCCCeeEEEECCC-CCEEEEEEcC
Q 002405 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----------WGYSMD------DTGPVSCIAWTPD-NSAFAVGWKS 328 (927)
Q Consensus 266 p~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~----------~~~~~~------h~~~V~~l~~spd-g~~Lasg~~D 328 (927)
+++.+.++=+.++.||.++. + + .+.++-+.. ++...+ .-..-..|+++++ |.+.++=..+
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N 465 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEECCCCEEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence 56777777778889999983 3 4 556665531 111111 1123478999997 7666665667
Q ss_pred CcEEEEEccCCeeE
Q 002405 329 RGLTVWSVSGCRLM 342 (927)
Q Consensus 329 g~v~vW~~~~~~~~ 342 (927)
+.|+.+++.+....
T Consensus 466 ~rIrki~~~~~~~~ 479 (496)
T 3kya_A 466 HTIRTISMEQEENV 479 (496)
T ss_dssp TEEEEEEECCCC--
T ss_pred CEEEEEECCCCccc
Confidence 88999998776544
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=84.31 E-value=53 Score=36.04 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=37.2
Q ss_pred CeEEEEEcCC---CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 002405 258 DAVCASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (927)
Q Consensus 258 ~~v~v~~sp~---~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (927)
.+..++++|+ +.+.++ ...+.|+.++..+ +. +.++.. .......++|+|+|+++++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-g~-v~~~~~--------~~~~P~giavd~dG~lyVad 199 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-QY-VDIKTT--------NIGQCADVNFTLNGDMVVVD 199 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-TE-EEEECC--------CCSCEEEEEECTTCCEEEEE
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-CE-EEEeec--------CCCCccEEEECCCCCEEEEc
Confidence 4458999995 555444 4448899999865 43 333332 23457899999999944444
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=84.18 E-value=67 Score=37.13 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=45.4
Q ss_pred CeEEEEEcCCCcEEE-EEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v~v~~sp~~~~la-~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.+..++++++++.|. +=...+.|..++++. ...+.+.... ..|. ..|++..| +...+-+.++.|...|.
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~~----~~~P---~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKGS----LPHP---FALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC-------------C---CCEEESSS-EEEEECTTTCSEEEEES
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeCC----CCCc---eEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 455899999755544 444567788888763 2222221100 0122 45677666 55556667788999998
Q ss_pred cCCeeEEEec
Q 002405 337 SGCRLMSTIR 346 (927)
Q Consensus 337 ~~~~~~~~l~ 346 (927)
.+++....+.
T Consensus 242 ~tg~~~~~i~ 251 (619)
T 3s94_A 242 YTGEGLREIH 251 (619)
T ss_dssp SSCCCCEECC
T ss_pred CCCcccEEEe
Confidence 7776555544
No 295
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.72 E-value=42 Score=34.42 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=38.2
Q ss_pred CCCEEEEEeCCc-----eE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 463 dG~~la~ag~dg-----~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
+++.++.||.++ .+ .||..+++|........... ........+.++++++.........+..|+.
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-TVKCAAVGSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS-CCEEEEETTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc-ceeEEEECCEEEEEeCcCCCeeeeeEEEEcC
Confidence 778888887643 35 89999999998765433221 1222233445556665543333345666655
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=82.39 E-value=54 Score=34.74 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEE--CCC-CC-EEEEEEcCCcEEEEEc
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TPD-NS-AFAVGWKSRGLTVWSV 336 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~--spd-g~-~Lasg~~Dg~v~vW~~ 336 (927)
+++|++|+++.....+..+.....+.. .-...+..++. +|+ |+ ++.+...+|.+..|.+
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~-t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l 160 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIA-TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYEL 160 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEE-CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcC-CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEE
Confidence 579999988532333333211000000 01144566777 774 54 6888888899999988
No 297
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=82.25 E-value=47 Score=33.95 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCc-----eE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 463 dG~~la~ag~dg-----~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
+++.++.||.++ .+ .||..+++|........... ........+.++++++.........+.+|+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-NAGVCAVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-cCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence 788888888753 46 99999999998765433321 1112233444555554432222334566655
No 298
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=81.76 E-value=54 Score=34.23 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=54.5
Q ss_pred eEEEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc--CCcEEEEE
Q 002405 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK--SRGLTVWS 335 (927)
Q Consensus 259 ~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~--Dg~v~vW~ 335 (927)
+..+++.+. +.+..+-...+.|.+++.+. .....+... ....-..+++.|.+..|..+.. .+.|...+
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~-------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEeC-------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 347888874 55556656678999999864 333333210 2344588999997665555542 46777777
Q ss_pred ccCCeeEEEeccccccceecceecCCC
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
..+... ..+...+...-+.++++|++
T Consensus 152 ~dG~~~-~~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 152 MDGSSR-FIIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp TTSCSC-EEEECSSCSCEEEEEEETTT
T ss_pred cCCCCe-EEEEECCCCCccEEEEeccC
Confidence 766432 22211113334566666644
No 299
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=81.37 E-value=54 Score=34.03 Aligned_cols=80 Identities=8% Similarity=-0.059 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCcEEE-EEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v~v~~sp~~~~la-~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.+..++++|+++.|- +-+..+.|..++++. ...+.+.... ...+.-..|++. .+....+-+..+.|..++.
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~-----~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE-----KRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECT-----TTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecC-----CccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 345899998765554 445567999999863 3344443210 012234567774 4566666677788888887
Q ss_pred cCCeeEEEe
Q 002405 337 SGCRLMSTI 345 (927)
Q Consensus 337 ~~~~~~~~l 345 (927)
.+++....+
T Consensus 237 ~~g~~~~~i 245 (316)
T 1ijq_A 237 LTGSDVNLL 245 (316)
T ss_dssp TTCCCCEEE
T ss_pred CCCcceEEE
Confidence 666544444
No 300
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=81.10 E-value=27 Score=40.14 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCCc---EEEEEecCCeEEEEeccCCCcceEEEe
Q 002405 266 PEQQ---ILAVGTRRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 266 p~~~---~la~g~~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
.+|+ .++.++.+|.+.++|.++ ++.+-...
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 363 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSN-GKLQNAFP 363 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CCCCEEEEEEEECCCceEEEEECCC-CCEecccc
Confidence 5674 788999999999999987 76654443
No 301
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=80.99 E-value=4.9 Score=46.52 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=40.6
Q ss_pred CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
+|.+..||+.+ ++.+-+..... +...+++ ...|..++.|+.|+.++.||..+++++.+++.
T Consensus 465 ~G~l~A~D~~t-G~~~W~~~~~~----~~~~g~~-----~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVS-GKVVWEHKEHL----PLWAGVL-----ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTT-CCEEEEEEESS----CCCSCCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCC-CCEEEEecCCC----CCcccce-----EeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 57888899887 65544443310 0012221 12466788899999999999999988877764
No 302
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=80.77 E-value=67 Score=34.72 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred CCCeEEEEEcCCCc-EEEEEecCCeEEEEeccCCC--cceEEEeeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcE
Q 002405 256 SGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGL 331 (927)
Q Consensus 256 h~~~v~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~Dg~v 331 (927)
...++.++|++... +..+-..++.|+.++++... ....++-.. .......+++.+.+. ...+-...+.|
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-------~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------DIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-------SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-------CCCCcccEEEEecCCceEEEECCCCeE
Confidence 34566999998654 55555567889888876411 112222210 234567889988544 44454556889
Q ss_pred EEEEccCCeeEEEeccccccceecceecCCC
Q 002405 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.+.++.+......+... ......++++|.+
T Consensus 184 ~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~ 213 (400)
T 3p5b_L 184 SVADTKGVKRKTLFREN-GSKPRAIVVDPVH 213 (400)
T ss_dssp EEECTTTCSEEEEEECS-SCCEEEEEEETTT
T ss_pred EEEeCCCCceEEEEeCC-CCCcceEEEeccc
Confidence 99998876433333222 3345566666643
No 303
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=80.58 E-value=17 Score=40.38 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=14.5
Q ss_pred eeEEEECCCCCEEEEEEc
Q 002405 310 VSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 310 V~~l~~spdg~~Lasg~~ 327 (927)
...|+|.|||++.++.++
T Consensus 146 ~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 146 SGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEECTTSCEEEEECC
T ss_pred CCeEeECCCCeEEEEECC
Confidence 588999999997776554
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=79.12 E-value=18 Score=38.66 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC---CCEEEEEEc----C-
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK----S- 328 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd---g~~Lasg~~----D- 328 (927)
..+..++|.|+|+++++ ..+|.|++++- + +. ..+.... ......+....|+|+|| +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-S-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-S-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-C-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 45668999999986665 56699988873 3 43 3232211 11112345789999998 455544433 2
Q ss_pred ---CcEEEEEccCC
Q 002405 329 ---RGLTVWSVSGC 339 (927)
Q Consensus 329 ---g~v~vW~~~~~ 339 (927)
+.|..|+..+.
T Consensus 102 ~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 102 HIRNRVIRGRLDGS 115 (354)
T ss_dssp CEEEEEEEEEECSS
T ss_pred CcceEEEEEEECCC
Confidence 45666766543
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=78.03 E-value=76 Score=33.74 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=41.5
Q ss_pred eEEEEEcCCCcEEEEE-ecCCeEEEEeccCCCcce--EEEeeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcC
Q 002405 259 AVCASIAPEQQILAVG-TRRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS 328 (927)
Q Consensus 259 ~v~v~~sp~~~~la~g-~~Dg~V~vwd~~~~~~~~--~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~D 328 (927)
+-.++||||++.|.++ +..+.|..|+++..+... +.+ . ..+..-.++..+ +|++.+++..+
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~--------~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S--------FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--------CSSEEEEEEECTTTCCEEEEEESC
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e--------CCCCCceEEEeCCCCcEEEEecCC
Confidence 3478999999876665 457899999997534321 223 1 235567789999 59988776543
No 306
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=77.43 E-value=59 Score=34.49 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=47.5
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCC---CCEEEEEE---cC
Q 002405 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGW---KS 328 (927)
Q Consensus 255 ~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd---g~~Lasg~---~D 328 (927)
+-..+..++|.|+|+++++-...|.|++++.++ +.. ..+.... .......+....|+++|| +..|.+.. .+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~-~~v~~~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRK-TELGEVP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcE-eeecccC-ceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 345566899999999888765589999887544 332 2222110 011113567899999996 34444332 33
Q ss_pred CcEEEEEccC
Q 002405 329 RGLTVWSVSG 338 (927)
Q Consensus 329 g~v~vW~~~~ 338 (927)
+.|.-|...+
T Consensus 107 ~~v~R~~~~~ 116 (347)
T 3das_A 107 NRIVRMLYDE 116 (347)
T ss_dssp EEEEEEEBCT
T ss_pred CEEEEEEeCC
Confidence 4455555543
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=76.35 E-value=73 Score=32.67 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=37.2
Q ss_pred CCCEEEEEeCC-----ceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 463 dG~~la~ag~d-----g~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
+++.++.||.+ ..+ .||+.+++|........... ........+.++++++.........+.+|+.
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS-ALGITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc-ceEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 78888888875 345 99999999998764332221 1112223344555554433223345666655
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=75.94 E-value=22 Score=41.95 Aligned_cols=80 Identities=8% Similarity=-0.028 Sum_probs=47.4
Q ss_pred EEEEEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 260 VCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 260 v~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
..++|+|++ ++..+-+..+.|.+++++. ...+.+.... .....-..|++..+ .++.+.+..+.|..++..+
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~-----~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE-----KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCS-----SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecC-----CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 379999875 4555555677899999863 3333332200 01111234455443 4555666778999999887
Q ss_pred CeeEEEecc
Q 002405 339 CRLMSTIRQ 347 (927)
Q Consensus 339 ~~~~~~l~~ 347 (927)
++....+..
T Consensus 615 G~~~~~i~~ 623 (699)
T 1n7d_A 615 GSDVNLLAE 623 (699)
T ss_dssp EEEEECCCT
T ss_pred CCceEEeec
Confidence 776666543
No 309
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.20 E-value=80 Score=32.61 Aligned_cols=65 Identities=6% Similarity=-0.061 Sum_probs=35.1
Q ss_pred EEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC--CcEEEEEccC
Q 002405 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RGLTVWSVSG 338 (927)
Q Consensus 262 v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D--g~v~vW~~~~ 338 (927)
..++|++++|+-...++.-+|+.+...+.....+.. ..+ ..|+|+|..|.-+... +.|..-++.|
T Consensus 189 ~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~----------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 189 KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE----------ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC----------SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC----------CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 346699998887655432455555443444444322 223 3488888888755332 3344444444
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.57 E-value=1.1e+02 Score=37.57 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=31.1
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 259 ~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
.++++..++..++.+-|.|+++|+|++.+ ++++.+...
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~dL 275 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIEL 275 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEEEC
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeeecc
Confidence 34788888888999999999999999988 777766543
No 311
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=72.34 E-value=1.7e+02 Score=34.95 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=57.6
Q ss_pred CCCCeEEEEEcCC-CcEEEEEecCCeEEEEeccCCC---cceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcCC
Q 002405 255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSR 329 (927)
Q Consensus 255 ~h~~~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~Dg 329 (927)
+...++.++|++. +.++.+-...+.|+.++++... .....+.. ..+....|++.+.+..|..+ ...+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--------~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--------SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec--------CCCCcceeeeeecCCcEEEEecCCC
Confidence 3445568999985 5556666667889888886411 11222221 23445779998877655544 4568
Q ss_pred cEEEEEccCCeeEEEeccccccceecceecCCC
Q 002405 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
.|.+.++.+.... ++..........++++|..
T Consensus 494 ~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 494 TVSVADTKGVKRK-TLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp EEEEEETTSSSEE-EEEECTTCCEEEEEEETTT
T ss_pred eEEEEeCCCCeEE-EEEeCCCCCcceEEEecCC
Confidence 8999998876433 3322223445666776653
No 312
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=71.46 E-value=98 Score=31.97 Aligned_cols=94 Identities=9% Similarity=-0.043 Sum_probs=53.5
Q ss_pred eEEEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-C-CcEEEEE
Q 002405 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-S-RGLTVWS 335 (927)
Q Consensus 259 ~v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-D-g~v~vW~ 335 (927)
+..+++.+. +.+..+-..++.|.+.+.+. .....+-.. .-.....++..|++..|..+.. . +.|...+
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~-------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEEC-------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 337888875 45555656788999999864 333333220 2345689999996665544443 3 6777777
Q ss_pred ccCCeeEEEeccccccceecceecCCC
Q 002405 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
..+... ..+.......-+.++++|++
T Consensus 150 ~dG~~~-~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 150 LNGVDI-YSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp TTSCCE-EEEECSSCSCEEEEEEETTT
T ss_pred CCCCCe-EEEEECCCCCceEEEEeccC
Confidence 765432 22211112334455565543
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=71.42 E-value=1.2e+02 Score=33.11 Aligned_cols=65 Identities=9% Similarity=0.160 Sum_probs=44.0
Q ss_pred CeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEe---cC----cEEEEEEEE
Q 002405 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT---SS----LYLHIFKVQ 97 (927)
Q Consensus 31 g~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t---~d----g~l~i~~l~ 97 (927)
.+.|+.++++.|+-|+......+..-+.|... +. .-.+..-.-++|.+++++.+ .+ |.+.+|+++
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~-L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSS-LA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECCGG-GT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecchh-cc-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 45788899999999999645566667777653 33 23345667789999877532 22 556777664
No 314
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=71.26 E-value=1e+02 Score=32.03 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCcEEE-EEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 258 DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 258 ~~v~v~~sp~~~~la-~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
.+..++++|+++.|- +=+..+.|..++++. ...+++... ..+.-..+++. .+..+.+-+..+.|..++.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-------~~~~P~glav~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKG-------SLPHPFALTLF-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------CCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEEecC-------CCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence 445899999665554 445567899999863 333333220 22334566664 3445556666788888888
Q ss_pred cCCeeEEEec
Q 002405 337 SGCRLMSTIR 346 (927)
Q Consensus 337 ~~~~~~~~l~ 346 (927)
.+++....+.
T Consensus 237 ~~G~~~~~i~ 246 (318)
T 3sov_A 237 YTGEGLREIH 246 (318)
T ss_dssp TTCCSCEEEE
T ss_pred CCCCceEEEe
Confidence 6665544443
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=70.33 E-value=8.9 Score=37.86 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=39.2
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEeccCCCc--c---eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 261 CASIAPEQQILAVGTRRGVVELYDLAESAS--L---IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~--~---~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
++.|.|+|.+.|+ .||.|.-++-.+.+. - -.++... -=+.+..|.|.|||.+-|+. |+.+
T Consensus 92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-------gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG-------GWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS-------SGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC-------CCCceEEEEECCCceEEEEe--CCcE
Confidence 8999999999998 669876665422111 0 0111110 11468999999999998888 5553
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=70.21 E-value=16 Score=36.13 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=53.1
Q ss_pred EEEEeCCcEEEEeeecCcccee--eecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCC-------cceEE
Q 002405 224 FVLYSNGQLMSCSVSKKGLKLA--EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-------SLIRT 294 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~w--~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~-------~~~~~ 294 (927)
..+..| ++++-...++....| ...+.-+ .+-.....++|+|+|.+.|+ .+|. +|..+... ..-..
T Consensus 8 ~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~-~gw~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 8 RGVYQD-KFYQGTYPQNKNDNWLARATLIGK-GGWSNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp EEEETT-EEEEESCCCSTTCCHHHHSEEEES-SSCTTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCEE
T ss_pred EEEeCC-cEEecCCCCCcccchhhhccccCc-cccccceeEEECCCccEEEE--eCCe--EEEECCCCCCcccccccccE
Confidence 444566 666555555444445 1111100 01122228999999999988 6776 45544311 11111
Q ss_pred EeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
+-.. +-.+ -.++.|.|+|.+-|+ .||.|.-++-
T Consensus 82 IG~~------Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 82 IGNG------GWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp EECS------CGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred eccc------cccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 1100 0111 478999999999888 5588776664
No 317
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=70.04 E-value=94 Score=34.69 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=47.4
Q ss_pred eEEEEEcC-CCcEEEEEecCCeEEEEecc-------CCCcc-----------eEEEeeecCCCCCCCCCCeeEEEECCCC
Q 002405 259 AVCASIAP-EQQILAVGTRRGVVELYDLA-------ESASL-----------IRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (927)
Q Consensus 259 ~v~v~~sp-~~~~la~g~~Dg~V~vwd~~-------~~~~~-----------~~~l~~~~~~~~~~h~~~V~~l~~spdg 319 (927)
+..++++| ++.++++-..++.|..+|++ + +.. ...+-.. +..+.-..|+|+|+|
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t-g~~~tp~~~~~~g~~~~l~~~------~~~~~p~~ia~~p~G 321 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN-GGSWDPIVKNNPNTFKQLFTI------ADPSWEFQIFIHPTG 321 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT-TCCCCCBGGGCTTTEEEEEEC------SSSSCCEEEEECTTS
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC-ceeecccccccccccceeEec------CCCCCceEEEEcCCC
Confidence 34678899 56777777888999999987 3 322 1122110 023345789999999
Q ss_pred CEEEEE-EcCCcEEEEEccC
Q 002405 320 SAFAVG-WKSRGLTVWSVSG 338 (927)
Q Consensus 320 ~~Lasg-~~Dg~v~vW~~~~ 338 (927)
+.|..+ +..+.|+.++..+
T Consensus 322 ~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 322 KYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp SEEEEEETTTTEEEEEEEET
T ss_pred CEEEEEeCCCCEEEEEecCC
Confidence 965555 4557788866644
No 318
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=69.71 E-value=1.1e+02 Score=31.66 Aligned_cols=54 Identities=9% Similarity=-0.082 Sum_probs=30.6
Q ss_pred EEEcCCCcEEEEEec-CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 262 ASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 262 v~~sp~~~~la~g~~-Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
.+++|+++.|.-.+. ..+|.+-+++. ...+.+.. +... ..++|+|.+|+-...+
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g--~~~~~l~~----------~~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTAS--QSEALFYD----------CNCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTT--TEEEEEEC----------SCEE-EEEEEETTEEEEEEGG
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCC--CCEEEEeC----------CCcc-ceeeecCCEEEEEEcC
Confidence 456788888886655 45666666543 33333321 2222 2355888888765543
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=69.31 E-value=43 Score=37.10 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=39.6
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC-CCCCCCCeeEEEECCC---CCEEEEEE
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPD---NSAFAVGW 326 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~-~~~h~~~V~~l~~spd---g~~Lasg~ 326 (927)
..+..++|.|+|+++++-...+.|++++..+ +.. ..+....... .....+....|+|+|| +..|.++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 4566899999999887754445788777543 332 2222211111 0112466789999995 55554443
No 320
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=68.81 E-value=12 Score=44.19 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=41.7
Q ss_pred EEEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cC-CcEEEEEc
Q 002405 260 VCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-RGLTVWSV 336 (927)
Q Consensus 260 v~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~D-g~v~vW~~ 336 (927)
..+++.+. +.+.++-...+.|.+++++. ....++-.. .......|++.|++..|..+. .. +.|.+.++
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~~l~~~-------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSS--CCEEEECCC-------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCC--CceEEEEeC-------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 37888864 45555555678899998764 333333220 122346789999755544433 32 67777776
Q ss_pred cCC
Q 002405 337 SGC 339 (927)
Q Consensus 337 ~~~ 339 (927)
.+.
T Consensus 527 dG~ 529 (699)
T 1n7d_A 527 NGV 529 (699)
T ss_dssp SSC
T ss_pred CCC
Confidence 553
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=65.59 E-value=1.2e+02 Score=30.70 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=21.3
Q ss_pred CCCEEEEEeCC-----ceE-EEEccCCcEEeeC
Q 002405 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 489 (927)
Q Consensus 463 dG~~la~ag~d-----g~i-~wd~~s~~w~~f~ 489 (927)
+|+.++.||.+ ..+ .||..+++|+...
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 78888888865 345 8999999998754
No 322
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=61.44 E-value=1.6e+02 Score=30.79 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=51.9
Q ss_pred eEEEEEcCCCcEEEEEecC-CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 259 AVCASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 259 ~v~v~~sp~~~~la~g~~D-g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
+..+++.++|+.-++++.- +.|...+.+ ++....+-. ..+. ....-..+.|+++|||+.|++...+|.+..+|+.
T Consensus 139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~-~~~~-~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAW-ESGN-GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEE-CCCC-SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeee-cCCC-cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 3489999999999999988 876555543 443433332 1111 1122346789999999988888778889999886
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.58 E-value=57 Score=40.00 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=33.5
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEe
Q 002405 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (927)
Q Consensus 308 ~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l 345 (927)
..+.+++..+|..++.+-+.|+++|+|++.++.++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888899999999999999999999999888764
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=60.38 E-value=1e+02 Score=32.49 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=33.5
Q ss_pred eEEEEEcCC----CcEEEEEec-------CCeEEEEeccCCCcceEEEee--ecCCC--CCCCCCCeeEEEECCCCCEEE
Q 002405 259 AVCASIAPE----QQILAVGTR-------RGVVELYDLAESASLIRTVSL--YDWGY--SMDDTGPVSCIAWTPDNSAFA 323 (927)
Q Consensus 259 ~v~v~~sp~----~~~la~g~~-------Dg~V~vwd~~~~~~~~~~l~~--~~~~~--~~~h~~~V~~l~~spdg~~La 323 (927)
...++++|+ +.+.++-+. ...|..|+++.....+...+. ...+. ...|.+ ..|+|.|||.+.+
T Consensus 68 ~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~--~~l~~~pdG~Lyv 145 (353)
T 2g8s_A 68 LLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFG--GRLVFDGKGYLFI 145 (353)
T ss_dssp EEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCC--CCEEECSSSEEEE
T ss_pred ceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccC--ccEEECCCCcEEE
Confidence 348999996 444444333 234656666432111111111 11111 123433 5699999997655
Q ss_pred EEEc
Q 002405 324 VGWK 327 (927)
Q Consensus 324 sg~~ 327 (927)
+-++
T Consensus 146 ~~Gd 149 (353)
T 2g8s_A 146 ALGE 149 (353)
T ss_dssp EECC
T ss_pred EECC
Confidence 5443
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=58.35 E-value=1.6e+02 Score=29.80 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=21.4
Q ss_pred CCCEEEEEeCC-----ceE-EEEccCCcEEeeC
Q 002405 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 489 (927)
Q Consensus 463 dG~~la~ag~d-----g~i-~wd~~s~~w~~f~ 489 (927)
+++.++.||.+ ..+ .||..+++|+...
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 78888888864 445 8999999998753
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=54.42 E-value=2e+02 Score=29.79 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=31.5
Q ss_pred EccCCCEEEEEeCC----------------------ceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeec
Q 002405 460 ASKDGMFLAVAGLH----------------------GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (927)
Q Consensus 460 ~spdG~~la~ag~d----------------------g~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~ 516 (927)
...+++.++.||.+ ..+ +||+.+++|...+.....+. ....+...+.++|+++...
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-YGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-SSEEEEETTEEEEEEEECG
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-cceeEEeCCEEEEEeeeCC
Confidence 33477888888743 134 89999999998754333322 1223344566677776643
No 327
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=52.65 E-value=3.1e+02 Score=31.40 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=54.8
Q ss_pred CeEEEEEcCCC-cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEE-EEEEc-CCcEEEE
Q 002405 258 DAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWK-SRGLTVW 334 (927)
Q Consensus 258 ~~v~v~~sp~~-~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~L-asg~~-Dg~v~vW 334 (927)
.+-.+|+.+.+ ++..+-..++.|.+.+++. ....++-.. .-..-..|++.|.+..| .+-+. .+.|...
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~~-------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~ 155 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERA 155 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEeC-------CCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence 44489999954 4555656778999999864 444444321 23345789999965444 44433 3456666
Q ss_pred EccCCeeEEEeccccccceecceecCCC
Q 002405 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (927)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~s~~~sp~~ 362 (927)
++.|.......... ...-+.+++++++
T Consensus 156 ~~dG~~~~~l~~~~-~~~P~Glald~~~ 182 (619)
T 3s94_A 156 GMDGSSRFIIINSE-IYWPNGLTLDYEE 182 (619)
T ss_dssp ETTSCSCEEEECSS-CSSEEEEEEETTT
T ss_pred ECCCCceEEEEeCC-CCCCcEEEEEccC
Confidence 66654332222222 3345667777654
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=51.56 E-value=2e+02 Score=28.92 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCc-----eE-EEEccCCcEEeeC
Q 002405 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 489 (927)
Q Consensus 463 dG~~la~ag~dg-----~i-~wd~~s~~w~~f~ 489 (927)
+|+.++.||.++ .+ .||..+++|..+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 788888888764 36 9999999999875
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=50.98 E-value=2.5e+02 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=35.9
Q ss_pred EEEEcC--CCc--EEEEEec--CCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 002405 261 CASIAP--EQQ--ILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (927)
Q Consensus 261 ~v~~sp--~~~--~la~g~~--Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (927)
.+.+.+ ++. ++++-.. +.+|.+|+++..+.....+.... + ..-...++++..|+|++.++..
T Consensus 116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-g---~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-H---KLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-C---TTCSSEEEEEEEETTEEEEEES
T ss_pred eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-c---CCCCCCceEEEeCCCCEEecCC
Confidence 444433 453 5555443 67899999876333322222211 0 0224578999999999887754
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=49.98 E-value=2.1e+02 Score=36.40 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEE
Q 002405 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l 295 (927)
=+|++.+|++...+-.-+.-|-|.+||+.+ +.++..-
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~ 296 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMN 296 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEeccc-chhhhhc
Confidence 356888999988888889999999999998 7665433
No 331
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.40 E-value=74 Score=39.93 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=30.5
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 260 v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
++++..++..++.+-|.|+++|+|++.+ +.++.+...
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t-~~~v~t~DL 277 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIEL 277 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTT-TEEEEEEEC
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCC-CCeEEeech
Confidence 3667778889999999999999999998 777776554
No 332
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.67 E-value=56 Score=41.05 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=32.9
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEccCCeeEEEec
Q 002405 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (927)
Q Consensus 308 ~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (927)
..+.+++..++..++.+-+.|+++||||+.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345667778899999999999999999999998887643
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=41.99 E-value=3e+02 Score=35.12 Aligned_cols=113 Identities=10% Similarity=0.062 Sum_probs=63.3
Q ss_pred EeCCcEEEEeeecCccceeeecccceecCCC---CeEEEE-EcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSG---DAVCAS-IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 227 s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~---~~v~v~-~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
.|..++++... ..++.+.+..+..+...|. +.+-=. +||+.--|+| +..|.-|++.....+.+.+....
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~--- 146 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHS--- 146 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcch---
Confidence 56666666654 5567788877665554432 223223 3444323333 45799999965334443333300
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEE-------cCCcEEEEEccCCeeEEEeccc
Q 002405 303 SMDDTGPVSCIAWTPDNSAFAVGW-------KSRGLTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~-------~Dg~v~vW~~~~~~~~~~l~~~ 348 (927)
+- ....|..-.-++|.++++..+ -.|.+.++++..+ ..+.++||
T Consensus 147 ~L-~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh 197 (1630)
T 1xi4_A 147 SL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (1630)
T ss_pred hc-ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh
Confidence 00 134566777788888877543 2467788887653 34455555
No 334
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=39.35 E-value=3.7e+02 Score=28.45 Aligned_cols=265 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred EEecCeEEEEEccCeEEEe---ecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 002405 27 FKVNNGLLLIASPCHIELW---SSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (927)
Q Consensus 27 fs~dg~lla~~~~~~v~IW---~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (927)
|+.+..+++.-++++|..| +..|-+..-......+..+.......-+..+--....++-+.+|.|..|--......-
T Consensus 7 ~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp --------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred ccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCC
Q ss_pred ecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccccc
Q 002405 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (927)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~ 183 (927)
.-...... .+.....+......+.++++.....++-+.+|.++. |-.....++
T Consensus 87 ~g~~~~~~---------~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~--wG~n~~GqL---------------- 139 (389)
T 3kci_A 87 IGGTESVS---------TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS--WGEAEDGKL---------------- 139 (389)
T ss_dssp SSSSCCEE---------EEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE--EECCGGGTT----------------
T ss_pred CCCcCCcc---------CCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE--EeCCCCCcC----------------
Q ss_pred ccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeec----Cccceeeeccccee--cCCC
Q 002405 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEFIKIDKE--LGSG 257 (927)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d----~~~~~w~~~~~~~~--~~h~ 257 (927)
-.........-.....-....-+........+++++.||+++.++.++ +.-..-+...+... ....
T Consensus 140 --------G~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~ 211 (389)
T 3kci_A 140 --------GHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH 211 (389)
T ss_dssp --------CSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred --------CCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcc---------eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 002405 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASL---------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (927)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~---------~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~D 328 (927)
..+.++........+.-..||+|..|--...+++ ....-. .-....-+..+.-..+-++-..|
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~--------~~~~~~v~~v~~G~~hs~alt~~ 283 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID--------SLTGLGVVKVECGSQFSVALTKS 283 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG--------GGTTSCEEEEEEETTEEEEEETT
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec--------ccCCCcEEEEeCCCCEEEEEeCC
Q ss_pred CcEEEE
Q 002405 329 RGLTVW 334 (927)
Q Consensus 329 g~v~vW 334 (927)
|.|..|
T Consensus 284 G~v~~w 289 (389)
T 3kci_A 284 GAVYTW 289 (389)
T ss_dssp SCEEEE
T ss_pred CeEEEE
No 335
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=38.92 E-value=3.4e+02 Score=27.89 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=58.8
Q ss_pred ceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEeccCC---CcceEEEe
Q 002405 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVS 296 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~---~~~~~~l~ 296 (927)
..++.++.+|...-+...+....--.....-.+.. .+.+ .+........++..+.+|.+..+.+++- ++...-..
T Consensus 115 ~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~ 193 (312)
T 1suu_A 115 AYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC 193 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE
T ss_pred CEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE
Confidence 34566677777666554432110000011111122 3444 5544444567778899999999988651 11000011
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEccC
Q 002405 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~~ 338 (927)
.. .......|.++..-+++..+++.+..|..+..++..
T Consensus 194 ~i----~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 194 GM----KLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CC----CCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred eE----EeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 10 011234566665555666777888888888887744
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=38.31 E-value=2.1e+02 Score=30.01 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=36.3
Q ss_pred cEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEE---ECCCCCEEEEE-EcCCcEEEEEccCCeeEE
Q 002405 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA---WTPDNSAFAVG-WKSRGLTVWSVSGCRLMS 343 (927)
Q Consensus 269 ~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~---~spdg~~Lasg-~~Dg~v~vW~~~~~~~~~ 343 (927)
.++.+++.||.|.-.|..+ |+..-+++... ..++.... ...+|..++.. ..||.+..++..+|....
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~-------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPEN-------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGG-------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCc-------cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 3577778888888888776 65544444310 01111100 00133444443 578888888877764443
No 337
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.27 E-value=3.2e+02 Score=27.53 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=50.7
Q ss_pred ceEEEEEeCCcEEEEeeecCc-cceeeecccceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeec
Q 002405 221 RLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (927)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~-~~~w~~~~~~~~~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (927)
..++++. ||+++.++.++.. +-+ +. ....+.+.++...... +|. . ||.|..|-....+++-. ..
T Consensus 34 ~h~~~l~-~G~v~~wG~n~~Gqlg~-----p~--~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~--P~-- 98 (282)
T 3qhy_B 34 FHGLALK-GGKVLGWGANLNGQLTM-----PA--ATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV--PA-- 98 (282)
T ss_dssp SEEEEEE-TTEEEEEECCSSSTTSC-----CG--GGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC--CG--
T ss_pred CeEEEEE-CCEEEEEeCCCCCCCCC-----Cc--cCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC--Cc--
Confidence 3445566 9999998876532 111 10 1112223666555443 344 4 89999998765443211 00
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
.-...|..++-..+- .+|.. ||.|..|-..
T Consensus 99 -----~~~~~v~~ia~G~~h-s~al~--~G~v~~wG~n 128 (282)
T 3qhy_B 99 -----EARSGVDAIAAGAWA-SYALK--DGKVIAWGDD 128 (282)
T ss_dssp -----GGSSSEEEEEEETTE-EEEEE--TTEEEEEECC
T ss_pred -----ccCCCeEEEECcCCE-EEEEe--CCeEEEecCC
Confidence 013467777765442 33333 7899999653
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=36.08 E-value=4.7e+02 Score=28.65 Aligned_cols=114 Identities=10% Similarity=0.033 Sum_probs=68.1
Q ss_pred EEeCCcEEEEeeecCccceeeecccceecCC---CCeEEE-EEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCC
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGS---GDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h---~~~v~v-~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (927)
..|..++++... ..++.+.|..+.+++..| ++.+-= .+|++ .|+.-+ +..|.-|++.....+.+.+.....-
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhc
Confidence 356677666655 556778887766555332 333333 33444 344433 4679999997544566666551100
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEc-------CCcEEEEEccCCeeEEEeccc
Q 002405 302 YSMDDTGPVSCIAWTPDNSAFAVGWK-------SRGLTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~-------Dg~v~vW~~~~~~~~~~l~~~ 348 (927)
....|..-.-++|+++++..+- .|.+.+|+++.+ .-+.++||
T Consensus 149 ----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 149 ----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp ----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred ----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 1345777777899998875432 356788887653 45566666
No 339
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=36.03 E-value=3.5e+02 Score=27.21 Aligned_cols=221 Identities=11% Similarity=-0.015 Sum_probs=110.6
Q ss_pred ceEEEEEecCeEEEEEccCeEEEeecCCceeEEEEEeeChHhhhhcccccEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002405 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (927)
Q Consensus 22 ~~iv~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wspDg~~Lav~t~dg~l~i~~l~~~~~ 101 (927)
..|+.++.-..+.+..+++.|..|=.+ ...+++ ... .....+..|+-..+ -.+|+ + ||.|..|--.....
T Consensus 24 ~~i~~ia~G~~h~~~l~~G~v~~wG~n-~~Gqlg---~p~---~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALKGGKVLGWGAN-LNGQLT---MPA---ATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSCCEEEECSSEEEEEETTEEEEEECC-SSSTTS---CCG---GGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTST
T ss_pred CCCcEEEeCCCeEEEEECCEEEEEeCC-CCCCCC---CCc---cCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCC
Confidence 456666666665444468899999765 222222 111 12235667776544 34444 5 88888775321110
Q ss_pred eeecCCCCCCCccceeeeEEeecccccccccceEEEeeccCCeEEEEecCCcEEEEecCCccccceeecccCCCCccccc
Q 002405 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (927)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~ 181 (927)
+ +.+. . ....|..+++.....++-+ +|.++.|=.+ ...+...
T Consensus 94 -l--------g~P~-------------~-~~~~v~~ia~G~~hs~al~-~G~v~~wG~n--~~gqlg~------------ 135 (282)
T 3qhy_B 94 -T--------TVPA-------------E-ARSGVDAIAAGAWASYALK-DGKVIAWGDD--SDGQTTV------------ 135 (282)
T ss_dssp -T--------CCCG-------------G-GSSSEEEEEEETTEEEEEE-TTEEEEEECC--TTSTTSC------------
T ss_pred -C--------CCCc-------------c-cCCCeEEEECcCCEEEEEe-CCeEEEecCC--CCCcCCC------------
Confidence 0 0000 0 0124667777777666666 9988765332 2222100
Q ss_pred ccccCCCCCccccCCCceecccccCCCccEEEEEEccCcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeEE
Q 002405 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC 261 (927)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~ 261 (927)
| ......|..+.- .....++++ ||+++.++.++...-- .+.. ...+.+.
T Consensus 136 -~---------------------~~~~~~i~~i~~--G~~~~~~l~-~G~v~~wG~n~~gqlg----~p~~--~~~~v~~ 184 (282)
T 3qhy_B 136 -P---------------------AEAQSGVTALDG--GVYTALAVK-NGGVIAWGDNYFGQTT----VPAE--AQSGVDD 184 (282)
T ss_dssp -C---------------------GGGGSSEEEEEE--CSSEEEEEE-TTEEEEEECCTTSTTS----CCGG--GGSSEEE
T ss_pred -C---------------------ccCCCCeEEEEc--ccCEEEEEE-CCEEEEecCCCCCCCC----Ccee--cCCCeEE
Confidence 0 001123544432 233445566 8999888876532110 1100 0122235
Q ss_pred EEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 002405 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (927)
Q Consensus 262 v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~ 336 (927)
++-..+.. +|. .||.|..|-....+++-. .. .....|..|+-..+ ..+|.. ||.+..|--
T Consensus 185 i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~--p~-------~~~~~v~~i~~G~~-h~~al~--~g~v~~wG~ 244 (282)
T 3qhy_B 185 VAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV--PT-------EALSGVSAIASGEW-YSLALK--NGKVIAWGS 244 (282)
T ss_dssp EEECSSEE-EEE--ETTEEEEEECCTTSTTCC--CG-------GGGSSCCEEEECSS-CEEEEE--TTEEEEEST
T ss_pred EEecCCEE-EEE--ECCeEEEEECCCCCCCCC--Cc-------ccCCCceEEEcCCC-EEEEEE--CCEEEEecC
Confidence 65544443 444 599999998766443311 00 01234667765543 334443 788888854
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=35.30 E-value=33 Score=38.74 Aligned_cols=104 Identities=10% Similarity=-0.017 Sum_probs=58.6
Q ss_pred EEEEeCCcEEEEeee-cCccceeeecccce------------e----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEecc
Q 002405 224 FVLYSNGQLMSCSVS-KKGLKLAEFIKIDK------------E----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (927)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~~~~w~~~~~~~------------~----~~h~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~ 286 (927)
+-++|||++++.+.. +.++.+.+..+... . .--.++.-.+|.++|....+---|.+|.-|+++
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEecc
Confidence 567999998876653 45555555442110 0 111355588999999666677799999999997
Q ss_pred CC-----Ccc-eEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 002405 287 ES-----ASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (927)
Q Consensus 287 ~~-----~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (927)
.. +.. -..+...+..+.++|......=.-.|||++|++...
T Consensus 408 ~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 408 EAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred HHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 51 111 112222222233333211111122579999988754
No 341
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=34.57 E-value=26 Score=20.52 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=15.9
Q ss_pred HHHHHHHHHccCHHHHHHH
Q 002405 762 HCLLRHLLQRDKIEEALRL 780 (927)
Q Consensus 762 ~~~l~~ll~~~~~~~a~~~ 780 (927)
|++||+||-+.++..|+..
T Consensus 3 ~~LLRyLLDkDdgnaalry 21 (26)
T 2ao6_B 3 NALLRYLLDKDDGNAALRY 21 (26)
T ss_pred cHHHHHHHccccchHHHHH
Confidence 6789999999898888753
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=33.89 E-value=48 Score=35.00 Aligned_cols=115 Identities=9% Similarity=0.040 Sum_probs=62.1
Q ss_pred EEEEEeCCcEEEEeeecCccceeeecccceecCCCCeEEEE---EcCCCcEEEEE-ecCCeEEEEeccCCCcceEEEeee
Q 002405 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCAS---IAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLY 298 (927)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v~v~---~sp~~~~la~g-~~Dg~V~vwd~~~~~~~~~~l~~~ 298 (927)
.++.+.||++++....+|.++ |...... ....+... ...++..++.. +.||.+..++..+ +.....+...
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~-W~~~~~~----~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~ 86 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHII-WSIEPEN----FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIR 86 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEE-EEECGGG----SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHH
T ss_pred EEEEeCCCeEEEEECCCCcEE-EEecCCc----cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccc
Confidence 356688999999887777554 7664430 01111110 00123344443 5788888888765 4222222211
Q ss_pred cCCCCCCCCCCeeE----EEE----CCCCCEEEEEEcCCcEEEEEccCCeeEEEecc
Q 002405 299 DWGYSMDDTGPVSC----IAW----TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (927)
Q Consensus 299 ~~~~~~~h~~~V~~----l~~----spdg~~Lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (927)
..- ...++.. +.. +.++..+.+|+.+|.+..-|..+|+.+.++..
T Consensus 87 ~lv----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 87 QLV----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHH----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred cce----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 000 1122211 000 01455788899999999999999998888764
No 343
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=30.64 E-value=84 Score=27.72 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhccHhhHHHhHhh
Q 002405 868 TELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVSV 925 (927)
Q Consensus 868 ~~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~~~~l~~el~rf 925 (927)
.++|+++.+.|+.+.+.++=.++.+=.+...+.+.|.+.++.|.+.++-+-|..|-+|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~l 138 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 138 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence 4789999999998888888888877666666788999999999999988877766543
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=30.19 E-value=3.3e+02 Score=29.90 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCc-EEEEEecCCeEEEEeccCCC--cceEEEeeec-CCCCCCCCCCeeEEEECCC
Q 002405 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSLYD-WGYSMDDTGPVSCIAWTPD 318 (927)
Q Consensus 257 ~~~v~v~~sp~~~-~la~g~~Dg~V~vwd~~~~~--~~~~~l~~~~-~~~~~~h~~~V~~l~~spd 318 (927)
..+..++|.|+++ .|.++...|.|++++.+... ..+..+.... .+......+....|+|+||
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4667899999996 34445788999999753211 1111111000 0000112467889999996
No 345
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.00 E-value=1.3e+02 Score=34.28 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=36.3
Q ss_pred EEEEcCCCcEEEEEecC------------CeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 002405 261 CASIAPEQQILAVGTRR------------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (927)
Q Consensus 261 ~v~~sp~~~~la~g~~D------------g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (927)
.++|+|+|++++.-..+ ..+.+.+..+ ++..+.+.+. ....++.++|+|||+.|.+.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P-------~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGP-------IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECC-------TTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCC-------CCccCcCeeECCCCCEEEEE
Confidence 78999999966543221 1234444443 4444444441 34679999999999988765
No 346
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.99 E-value=2.7e+02 Score=28.90 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=50.5
Q ss_pred cccccccchHHhHhccC-ChH-------HHHHHHHhcCcHHHHhhHHhhhhhccCcchhHHHHHHHHHHHHhhc
Q 002405 849 ARKTDGRHWADLFSAAG-RST-------ELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDEC 914 (927)
Q Consensus 849 ~RK~e~~~W~~lF~~~g-~P~-------~lf~~cl~~~~l~~a~~yL~v~~~~~~~~~~~~~~~~ll~~al~~~ 914 (927)
.|-.|++ ..|+... .|. .=|..+.+.+|+.||+++..=|+.+.+...-.+.|.+++.+|-+..
T Consensus 187 kR~lELA---AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 187 VRMLELA---AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMA 257 (325)
T ss_dssp HHHHHHH---HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHH---HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 4555655 5677777 663 4477899999999999999999999887777788999999998663
No 347
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=28.68 E-value=5.3e+02 Score=27.03 Aligned_cols=115 Identities=9% Similarity=0.020 Sum_probs=69.2
Q ss_pred EEeCCcEEEEeeecCccceeeecccceecCC---CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCC
Q 002405 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGS---GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (927)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h---~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (927)
..|..++++... ..++.+.|..+.+++..| ++.+-=.|-.+. .||.-+ +..|.-|++.....+.+.+.....-
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L- 149 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL- 149 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG-
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhc-
Confidence 357777777665 566788888776665332 333333443332 344333 4579999997645566666551100
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEc-------CCcEEEEEccCCeeEEEeccc
Q 002405 303 SMDDTGPVSCIAWTPDNSAFAVGWK-------SRGLTVWSVSGCRLMSTIRQI 348 (927)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~-------Dg~v~vW~~~~~~~~~~l~~~ 348 (927)
....|..-.-++|.++++..+- .|.+.+|+++.+ .-+.++||
T Consensus 150 ---~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 150 ---AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp ---TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred ---ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeee
Confidence 1345777777889998776442 356788888654 45566666
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=27.86 E-value=4.2e+02 Score=26.73 Aligned_cols=66 Identities=12% Similarity=0.318 Sum_probs=39.2
Q ss_pred cCCCEEEEEeCC------ceE-EEEccCCcEEeeCCccceeeeEEEEEEeeCCEEEEEEeecCCCeEEEEEeeC
Q 002405 462 KDGMFLAVAGLH------GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (927)
Q Consensus 462 pdG~~la~ag~d------g~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~li~~~~~~~~~~~~l~l~~~ 528 (927)
.+|+.++.||.+ ..+ .||..+++|........... ........+.++++++.........+.+|+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-MFGVAIHKGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-cceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence 478888888752 235 99999999998764333221 1122334455666666554333345666765
No 349
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.60 E-value=46 Score=31.20 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhcchhHHHH---hhhcccccccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhh
Q 002405 826 SLLEKTCNFIRNFPEYLNVV---VSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILV 889 (927)
Q Consensus 826 ~~l~~v~~~l~~~~~~l~iv---v~c~RK~e~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v 889 (927)
..|.+|+++.+++-.+..-. -.=-+..++.-|+.=|=.+ ++..||+..+ ||+||=|
T Consensus 60 ~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~-------AAnyLdI 118 (169)
T 3v7d_A 60 SVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV-DQEMLYEIIL-------AANYLNI 118 (169)
T ss_dssp HHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCS-CHHHHHHHHH-------HHHHTTC
T ss_pred HHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcC-CHHHHHHHHH-------HHHHhCc
Confidence 78999999988765432100 0112456799999877443 7889998776 6777743
No 350
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=25.58 E-value=1.5e+02 Score=27.52 Aligned_cols=48 Identities=8% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEEeeCCccceeeeEEEEEEe
Q 002405 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (927)
Q Consensus 456 ~~va~spdG~~la~ag~dg~i-~wd~~s~~w~~f~~~~~e~~~~v~~~~W 504 (927)
.=+.|+|+|.+.|++...|.. -.|+..+.|.-+.....+. +.+..+.|
T Consensus 113 Ep~eF~p~~~w~a~~~esG~f~dvDLse~eW~DYDEk~~~~-VsI~e~~~ 161 (164)
T 1zso_A 113 ELIDFFPSNNFIVEDTKGKLYYDVNLSDQNWCDYNEEHEMC-VGIYNLEY 161 (164)
T ss_dssp EEEEECCCSCEEEEETTSCEEEEECCTTSCEEEEETTTTEE-EEEEEEEE
T ss_pred eeEEEecCCcEEEEECCCCcEEeeecCCCceeccccCCCCe-EEEEEEEE
Confidence 347899999999999777744 6788888998886554433 45555554
No 351
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.56 E-value=76 Score=29.89 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=45.2
Q ss_pred HHHHhhhccccc-ccchHHhHhccCChHHHHHHHHhcCcHHHHhhHHhhhhhccCc------chhHHHHHHHHHHHHhhc
Q 002405 842 LNVVVSVARKTD-GRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGP------AVSQYSALRLLQATLDEC 914 (927)
Q Consensus 842 l~ivv~c~RK~e-~~~W~~lF~~~g~P~~lf~~cl~~~~l~~a~~yL~v~~~~~~~------~~~~~~~~~ll~~al~~~ 914 (927)
+++....|+++| -..|+.| =+.||+.|++++|-.++-=..++.+. ..+.+...++.+.|..++
T Consensus 21 l~~A~e~a~~l~~~~~Wk~L----------g~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g 90 (177)
T 3mkq_B 21 LDAALDEAKKLNDSITWERL----------IQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHHHHCCHHHHHHH----------HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHH----------HHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence 444555566654 3457655 56799999999998776555554442 234556667777777777
Q ss_pred cHhhHHHh
Q 002405 915 LYELAGEL 922 (927)
Q Consensus 915 ~~~l~~el 922 (927)
++.+|+-.
T Consensus 91 ~~n~af~~ 98 (177)
T 3mkq_B 91 DFGSMLLN 98 (177)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 77766543
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=23.40 E-value=1.7e+02 Score=33.16 Aligned_cols=72 Identities=6% Similarity=0.125 Sum_probs=48.9
Q ss_pred EEEEcCCCcEEEEE-ecCCeEEEEeccCCC-----cc---eEEEee-ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 002405 261 CASIAPEQQILAVG-TRRGVVELYDLAESA-----SL---IRTVSL-YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (927)
Q Consensus 261 ~v~~sp~~~~la~g-~~Dg~V~vwd~~~~~-----~~---~~~l~~-~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~ 330 (927)
.+.++|||++++++ -.+.+|.|+|++... +. ...+.. .+. -.| -...+|.++|....|-.-|..
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-----GlG-PlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-----GLG-PLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-----CSC-EEEEEECSSSEEEEEETTTTE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-----CCc-ccEEEECCCCceEeeeeecce
Confidence 57899999987664 467899999997411 00 000111 011 123 367899999987778889999
Q ss_pred EEEEEccC
Q 002405 331 LTVWSVSG 338 (927)
Q Consensus 331 v~vW~~~~ 338 (927)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999954
No 353
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=21.66 E-value=9.8e+02 Score=27.66 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=42.8
Q ss_pred eE-EEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcc
Q 002405 259 AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (927)
Q Consensus 259 ~v-~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v~vW~~~ 337 (927)
.+ ++...+++..|-+|+. +-+..|+..+ +. ...+... ....|.++.-.++|...+.. ++++.+++..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~-~~-~~~~~~l-------~~~~i~~i~~d~~g~lWigT--~~Gl~~~~~~ 259 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPST-GQ-IKQTEAF-------HNNSIKSLALDGNGDLLAGT--DNGLYVYHND 259 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTT-TE-EEEEEEE-------EEEEEEEEEECTTCCEEEEE--TTEEEEECCT
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCC-Ce-EEeccCC-------CCCeEEEEEEcCCCCEEEEe--CCceeEEecC
Confidence 36 7777777664444554 3467778654 32 2222210 23458899888888866544 4678888876
Q ss_pred CCe
Q 002405 338 GCR 340 (927)
Q Consensus 338 ~~~ 340 (927)
++.
T Consensus 260 ~~~ 262 (758)
T 3ott_A 260 TTP 262 (758)
T ss_dssp TSC
T ss_pred CCc
Confidence 654
No 354
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=21.52 E-value=9.3e+02 Score=27.38 Aligned_cols=242 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred eccCCeEEEEecCCcEEEEecCCccccceeecccCCCCcccccccccCCCCCccccCCCceecccccCCCccEEEEEEcc
Q 002405 139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (927)
Q Consensus 139 ~~~~~~l~v~~~dg~i~~~~w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (927)
+...+..++-+....|+.+..+....... ......-..+..++|++
T Consensus 304 C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~----------------------------------~l~~~~~~~~~~ld~d~ 349 (628)
T 4a0p_A 304 CSAPTTFLLFSQKSAINRMVIDEQQSPDI----------------------------------ILPIHSLRNVRAIDYDP 349 (628)
T ss_dssp EECCSSEEEEEETTEEEEECCCTTCCCCE----------------------------------ECCCTTCSCEEEEEEET
T ss_pred CccccceeeeeccceEEEEecccccCceE----------------------------------EEEehhcCCceEEEEec
Q ss_pred CcceEEEEEeCCcEEEEeeecCccceeeecccceecCCCCeE-EEEEcCC-CcEEEEEecCCeEEEEeccCCCcceEEEe
Q 002405 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVS 296 (927)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~~~~w~~~~~~~~~~h~~~v-~v~~sp~-~~~la~g~~Dg~V~vwd~~~~~~~~~~l~ 296 (927)
..+.+.+.......+.....+++-..--.............. .+|+.+. +.+..+-+..+.|.+.+++. ......+.
T Consensus 350 ~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~ 428 (628)
T 4a0p_A 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLK 428 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEE
T ss_pred CCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEe
Q ss_pred eecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCC--cEEEEEccCCeeEEEeccccccceecceecCCCCCCcccccccc
Q 002405 297 LYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (927)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (927)
. .....++|++.| .|....+-+... .|...++.|.....-.... ....+.+++++.. ..+.-+.
T Consensus 429 ~--------~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~-l~~P~gla~D~~~----~~LYw~D 495 (628)
T 4a0p_A 429 G--------EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSG-LSKPIALALDSRL----GKLFWAD 495 (628)
T ss_dssp C--------TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSS-CSCEEEEEEETTT----TEEEEEE
T ss_pred C--------CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEecc-CCCccEEEEeCCC----CEEEEEe
Q ss_pred ----eeEEEcCCCceEEEEEcCCcceEEEEec--cceeeecccCCCeeeeeeeecCCeEEE
Q 002405 374 ----SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (927)
Q Consensus 374 ----~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~s~d~~~~~w~~~~~~~~~~~ 428 (927)
.+...+.++........+.-.....+.. +....+-.....+...+-..+.....+
T Consensus 496 ~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 496 SDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEE
No 355
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=20.71 E-value=7.4e+02 Score=25.93 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEeccCCCcceEEEee
Q 002405 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (927)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~Dg~V~vwd~~~~~~~~~~l~~ 297 (927)
.=+|++.+|++...+-.-+.-|-+.+||+++ +.++..-+.
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~~nrI 299 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRI 299 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEEEecc
Confidence 3466999999999999999999999999998 777665544
No 356
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=20.44 E-value=7.5e+02 Score=25.89 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=48.0
Q ss_pred EEEEEcCC-Cc-EEEEEecCCeEEEEeccCC------CcceEEEeeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 002405 260 VCASIAPE-QQ-ILAVGTRRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (927)
Q Consensus 260 v~v~~sp~-~~-~la~g~~Dg~V~vwd~~~~------~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~Dg~v 331 (927)
+|+--+|+ ++ ++.+...+|.+..|++... .+.++++.. .+.+-.+...+....|..+-+|.+|
T Consensus 133 lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---------gsq~EgcvvDd~~g~Lyv~eEd~GI 203 (355)
T 3amr_A 133 FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---------NSQTEGMAADDEYGRLYIAEEDEAI 203 (355)
T ss_dssp EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---------SSCEEEEEEETTTTEEEEEETTTEE
T ss_pred EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---------CCCcceEEEcCCCCeEEEecccceE
Confidence 34444775 54 5777788899999999431 244566654 4567888899989999999998775
Q ss_pred EEEEc
Q 002405 332 TVWSV 336 (927)
Q Consensus 332 ~vW~~ 336 (927)
..++.
T Consensus 204 w~~da 208 (355)
T 3amr_A 204 WKFSA 208 (355)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 55553
Done!