BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002406
         (927 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
           Domain Of Centrin
          Length = 96

 Score = 38.1 bits (87), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 313 KGQIGVSKEEKLQYKEAFPVVICDPSAQVN---LAFRMTSVGFCELQDEAASTLQCMDKC 369
           KG++G+++E+K + +EAF +   D S  ++   L   M ++GF   ++E    +  +DK 
Sbjct: 19  KGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKD 78

Query: 370 GDGGFE-ETFLT 380
           G G  + E FLT
Sbjct: 79  GSGTIDFEEFLT 90


>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
          Length = 169

 Score = 37.7 bits (86), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 313 KGQIGVSKEEKLQYKEAFPVVICDPSAQVN---LAFRMTSVGFCELQDEAASTLQCMDKC 369
           KG++G+++E+K + +EAF +   D S  ++   L   M ++GF   ++E    +  +DK 
Sbjct: 17  KGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKD 76

Query: 370 GDGGFE-ETFLT 380
           G G  + E FLT
Sbjct: 77  GSGTIDFEEFLT 88


>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
 pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
 pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
           Complex With Fructose
 pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
           Complex With Fructose
          Length = 526

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 37  DDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVK 96
           D+T    +  ++ +PD   +T+    G + D   DKV+  +  PK +K G ++ +   V 
Sbjct: 139 DNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYRDPKVWKTGDTWYMTFGVS 198

Query: 97  PA 98
            A
Sbjct: 199 SA 200


>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
 pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
          Length = 149

 Score = 30.0 bits (66), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 317 GVSKEEKLQYKEAFPVVICDPSAQVN---LAFRMTSVGFCELQDEAASTLQCMDKCGDGG 373
           G+++E+K + +EAF +   D S  ++   L   M ++GF   ++E    +  +DK G G 
Sbjct: 1   GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGT 60

Query: 374 FE-ETFL 379
            + E FL
Sbjct: 61  IDFEEFL 67


>pdb|1TE5|A Chain A, The 2.0 Angstrom Crystal Structure Of Predicted Glutamine
           Amidotransferase From Pseudomonas Aeruginosa Pa01
 pdb|1TE5|B Chain B, The 2.0 Angstrom Crystal Structure Of Predicted Glutamine
           Amidotransferase From Pseudomonas Aeruginosa Pa01
          Length = 257

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 34  KLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89
           +L  D +++V   ++++   FP+ ++   G +R     KV      P   ++GG Y
Sbjct: 47  RLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRY 102


>pdb|2ADF|A Chain A, Crystal Structure And Paratope Determination Of 82d6a3, An
           Antithrombotic Antibody Directed Against The Von
           Willebrand Factor A3-Domain
          Length = 196

 Score = 30.0 bits (66), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 628 LTPSCIQPLEVMIQLEGSGNWPMDH 652
           + P C QPL+V++ L+GS ++P  +
Sbjct: 4   MAPDCSQPLDVILLLDGSSSFPASY 28


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,778,306
Number of Sequences: 62578
Number of extensions: 1089054
Number of successful extensions: 2432
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 6
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)