Query 002406
Match_columns 927
No_of_seqs 141 out of 309
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 01:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhp_A Poly(A) polymerase; tem 99.9 1.4E-24 4.9E-29 253.2 28.5 302 81-438 82-401 (530)
2 1q79_A Poly(A) polymerase alph 99.9 1.1E-22 3.8E-27 236.5 22.2 307 81-438 95-413 (514)
3 3nyb_A Poly(A) RNA polymerase 99.4 1.1E-11 3.6E-16 137.4 21.4 272 8-369 16-299 (323)
4 4e8f_A Poly(A) RNA polymerase 99.3 3.4E-10 1.2E-14 128.9 23.9 285 13-387 44-382 (405)
5 4fh3_A Poly(A) RNA polymerase 99.2 4.7E-10 1.6E-14 125.4 22.4 275 17-378 20-346 (349)
6 2ikf_A RNA uridylyl transferas 99.1 5.2E-09 1.8E-13 117.3 20.5 234 81-366 67-348 (353)
7 3pq1_A Poly(A) RNA polymerase; 98.9 1.6E-07 5.4E-12 107.9 24.9 274 10-368 131-437 (464)
8 1px5_A 2'-5'-oligoadenylate sy 98.7 7.1E-07 2.4E-11 99.8 22.2 300 16-366 10-330 (349)
9 3hj4_A Minor editosome-associa 98.7 1.1E-06 3.7E-11 98.5 20.6 286 10-379 4-378 (384)
10 1r89_A TRNA nucleotidyltransfe 98.3 2.6E-06 8.9E-11 96.9 13.7 238 17-365 7-248 (437)
11 2b4v_A RNA editing complex pro 98.3 4.8E-06 1.6E-10 96.2 15.8 141 225-368 257-439 (468)
12 1px5_A 2'-5'-oligoadenylate sy 97.4 0.0029 9.8E-08 70.5 16.3 263 568-887 26-328 (349)
13 2hhp_A Poly(A) polymerase; tem 97.3 0.00057 1.9E-08 80.0 10.9 164 729-918 191-360 (530)
14 1q79_A Poly(A) polymerase alph 96.7 0.0024 8.2E-08 74.5 7.9 163 730-918 205-373 (514)
15 2ikf_A RNA uridylyl transferas 96.7 0.027 9.3E-07 62.7 16.2 214 636-883 87-345 (353)
16 4fh3_A Poly(A) RNA polymerase 96.2 0.023 7.9E-07 62.9 12.1 166 730-905 142-347 (349)
17 4at7_A Interleukin enhancer-bi 96.2 0.063 2.1E-06 59.2 14.8 261 23-379 37-305 (364)
18 4e8f_A Poly(A) RNA polymerase 96.0 0.1 3.5E-06 59.2 16.3 162 731-907 171-377 (405)
19 3nyb_A Poly(A) RNA polymerase 95.1 0.072 2.5E-06 58.6 10.3 141 731-889 146-299 (323)
20 4at7_B NF90, interleukin enhan 94.6 0.19 6.5E-06 55.9 11.8 233 83-378 94-336 (383)
21 1r89_A TRNA nucleotidyltransfe 94.6 0.65 2.2E-05 52.9 16.5 221 567-886 20-246 (437)
22 4at7_A Interleukin enhancer-bi 94.3 2 6.9E-05 47.4 19.0 222 569-829 46-286 (364)
23 4at7_B NF90, interleukin enhan 89.8 3.1 0.0001 46.3 13.5 181 635-829 111-318 (383)
24 3hj4_A Minor editosome-associa 89.0 3.7 0.00013 45.9 13.6 84 731-814 140-267 (384)
25 2b4v_A RNA editing complex pro 77.9 12 0.0004 43.1 11.8 150 729-889 256-440 (468)
26 3pq1_A Poly(A) RNA polymerase; 61.7 31 0.001 39.6 10.4 101 731-831 284-428 (464)
27 1no5_A Hypothetical protein HI 35.8 24 0.00081 32.1 3.3 29 80-109 27-55 (114)
28 1ylq_A Putative nucleotidyltra 29.8 27 0.00091 30.8 2.5 29 80-109 17-46 (96)
29 1wot_A Putative minimal nucleo 24.4 29 0.00098 30.7 1.7 29 80-109 25-53 (98)
30 2rff_A Putative nucleotidyltra 23.9 29 0.00099 31.6 1.7 28 81-109 34-61 (111)
No 1
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=99.93 E-value=1.4e-24 Score=253.19 Aligned_cols=302 Identities=16% Similarity=0.209 Sum_probs=221.9
Q ss_pred ceeeEeeeeecccccCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeE
Q 002406 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL 160 (927)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil 160 (927)
..|.++|||++|+. .|+.+||++|.+|+.+.. +|| ++.+++.|++.+...++.+. .+++.|||
T Consensus 82 ~~V~~FGSy~lG~~-~p~SDID~~v~~p~~~~~-~df------------f~~l~~~L~~~~~v~~v~~I---~~A~VPII 144 (530)
T 2hhp_A 82 GKIFTYGSYRLGVH-GPGSDIDTLVVVPKHVTR-EDF------------FTVFDSLLRERKELDEIAPV---PDAFVPII 144 (530)
T ss_dssp CEEEEEHHHHHTCC-CTTCCEEEEEEECTTCCH-HHH------------HHHHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred ceEEEecccccCCC-CCCCceeEEEecCCcCCH-HHH------------HHHHHHHHhcCCCCceEEEe---cCCcccEE
Confidence 36779999999987 678999999999998865 354 45677888876666666654 88999999
Q ss_pred EEEeCCCCCCCCCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccCh--------HHHHHHHHH
Q 002406 161 VVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFL--------EDNAEYVEK 232 (927)
Q Consensus 161 ~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~--------~~~l~~l~~ 232 (927)
.+.+. ++.|.|.++..+ ..+ .|...++ -|.++|.++-. ....+++.+
T Consensus 145 K~~~~-------gi~vDL~f~~~~---~~~-ip~~l~l--------------~~~~~L~~ld~~~~~slng~r~~d~I~~ 199 (530)
T 2hhp_A 145 KIKFS-------GISIDLICARLD---QPQ-VPLSLTL--------------SDKNLLRNLDEKDLRALNGTRVTDEILE 199 (530)
T ss_dssp EEEET-------TEEEEEEEEECS---SSC-BCTTCCS--------------CCGGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEC-------CEeeEEEEeccc---ccc-CCcccCC--------------CchhhhhccchhhhhccchHHHHHHHHH
Confidence 99974 478998886321 111 2322222 22233333221 123456677
Q ss_pred HhhChHHHHHHHHHHHHHHHhcCCCcc-CCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeec
Q 002406 233 TISRWKELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFP 311 (927)
Q Consensus 233 ~~~~~~~f~dA~~LlkvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~ 311 (927)
...+.++|+++++++|.||+|||++.+ .||+||+.|+||++++|| +.+.+|++||++.++++++++||. +||.++
T Consensus 200 ~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQ---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~ 275 (530)
T 2hhp_A 200 LVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNWP-QPVILK 275 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCTT-SCEESS
T ss_pred HccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHhcCCCC-CceEec
Confidence 788899999999999999999999876 688999999999999999 788999999999999999999996 699887
Q ss_pred CCCCCCCC------hhHHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhcc--CCCccccccccccc
Q 002406 312 PKGQIGVS------KEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKID 383 (927)
Q Consensus 312 ~~~~~~~~------~~~~~~~~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~--~~d~F~~lFl~~~~ 383 (927)
..+++... ..+..+.++.++| +.+..+.+|++++++.++++.|++|++++.++|++. +.+.|+.||+ +.+
T Consensus 276 ~~~~g~~~~~~w~p~~~~~d~~~~m~I-i~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~-~~~ 353 (530)
T 2hhp_A 276 PIEDGPLQVRVWNPKIYAQDRSHRMPV-ITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE-KND 353 (530)
T ss_dssp CCCCCSSCSCCCCTTTCHHHHTCSSCE-ECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCC
T ss_pred ccCCCCccccccCcccCCCCCccceeE-ECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcC-CCC
Confidence 54333221 1123344555664 467789999999999999999999999999999985 5689999997 789
Q ss_pred ccccCcEEEEeecCCcccccccccCCchhhHHHH-HHHHHHHHHHhhccccceEEE
Q 002406 384 FPAKYDYCVRLNLRGHTEVHALGFCLDDECWRLY-EQKVHSLLNQGLVDRAKSIRV 438 (927)
Q Consensus 384 ~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~lL~raLgdR~~~I~~ 438 (927)
|..+||+++.|.+... ....+...|..+ +.++..++ ..|.. ...|..
T Consensus 354 ff~~y~~~l~i~~~~~------g~~~~~~~w~G~veSr~r~Lv-~~Le~-~~~i~~ 401 (530)
T 2hhp_A 354 FFFRYKFYLEITAYTR------GSDEQHLKWSGLVESKVRLLV-MKLEV-LAGIKI 401 (530)
T ss_dssp HHHHCSEEEEEEEEEE------SCHHHHHHHHHHHHHHHHHHH-HHHHT-STTEEE
T ss_pred hHHhcCeEEEEEEEec------CCHHHHhhhcchHHHHHHHHH-HHhhc-ccCcee
Confidence 9999999999985431 001122345443 45555554 55653 554543
No 2
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=99.90 E-value=1.1e-22 Score=236.53 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=217.7
Q ss_pred ceeeEeeeeecccccCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeE
Q 002406 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL 160 (927)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil 160 (927)
..|.++|||++|+. .|+.+||++|.+|.++.. +||++ .+++.|++.+...++++. .+++.|||
T Consensus 95 ~~v~~FGS~~lG~~-~p~SDID~~~v~p~~~~~-~dff~------------~l~~~L~~~~~v~~v~~I---~~A~VPII 157 (514)
T 1q79_A 95 GKIFTFGSYRLGVH-TKGADIDALCVAPRHVDR-SDFFT------------SFYDKLKLQEEVKDLRAV---EEAFVPVI 157 (514)
T ss_dssp CEEEEEHHHHHTCC-CTTCCEEEEEEECTTSCH-HHHTT------------HHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred ceEEEeeeeccCCC-CCCCceeEEEecCCcCCH-HHHHH------------HHHHHHhcCccCceEEEe---cCCcccEE
Confidence 46789999999987 577999999999999876 46654 455677765555556543 78999999
Q ss_pred EEEeCCCCCCCCCeEEEEEecC-CCCCcccccccccCCccCCCC--CCCCCCCCCcchhhhhccChHHHHHHHHHHhhCh
Q 002406 161 VVYPAVKSVEAPGFFVRIIPTA-ASLFNIAKLNLKRNNVRAFNQ--DGIPRATPKYNSSILEDMFLEDNAEYVEKTISRW 237 (927)
Q Consensus 161 ~l~p~~~~~~~~~~~iRi~~~~-~~~F~~~rl~P~rnnvR~~~~--~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~ 237 (927)
.+... ++.|.|.++. ++. ..|..++++...- +-....-+.||+....| ++.+...+.
T Consensus 158 K~~~~-------gi~vDL~f~~~~~~-----~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d--------~I~~~vp~~ 217 (514)
T 1q79_A 158 KLCFD-------GIEIDILFARLALQ-----TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTD--------EILHLVPNI 217 (514)
T ss_dssp EEEET-------TEEEEEEEEECSCS-----SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHH--------HHHTSSSCH
T ss_pred EEEEC-------CeeEEEEEecCCcc-----cCcccccCCchhhhcccchhhhhhhhhHHHHH--------HHHHHccCc
Confidence 99974 4788888874 332 3455555542100 00001123455555443 366667788
Q ss_pred HHHHHHHHHHHHHHHhcCCCcc-CCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeecCCCCC
Q 002406 238 KELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQI 316 (927)
Q Consensus 238 ~~f~dA~~LlkvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~ 316 (927)
++|+.+++++|.||+|||++.+ .||+||+.|+||++++|| +.+.+++.|++..++++.+++||. +||.++..+++
T Consensus 218 ~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Q---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~~~~~~ 293 (514)
T 1q79_A 218 DNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQ---LYPNAIASTLVHKFFLVFSKWEWP-NPVLLKQPEEC 293 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHSCCTT-SCBCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHhcCCCC-CCeEecccCCC
Confidence 9999999999999999998876 789999999999999999 788899999999999999999996 68877644332
Q ss_pred CCCh----h--HHHhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhcc--CCCcccccccccccccccC
Q 002406 317 GVSK----E--EKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKIDFPAKY 388 (927)
Q Consensus 317 ~~~~----~--~~~~~~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~--~~d~F~~lFl~~~~~~~~f 388 (927)
.... + ...+-....+| +.+.....|++++++.++++.|++|.+++.++|++. +...|+.+|. +.+|..+|
T Consensus 294 ~l~~~~w~p~~~~~dr~~~m~I-idP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~-~~~ff~~y 371 (514)
T 1q79_A 294 NLNLPVWDPRVNPSDRYHLMPI-ITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFE-APNFFQKY 371 (514)
T ss_dssp SSCCCCCCTTTCGGGGGCSSCB-BCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCCHHHHC
T ss_pred CCCCcccCCccCCcCcccceeE-eCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhC-Ccchhhhc
Confidence 2211 0 00010112333 345578999999999999999999999999999974 3458999996 78999999
Q ss_pred cEEEEeecCCcccccccccCCchhhHHHHHHHHHHHHHHhhccccceEEE
Q 002406 389 DYCVRLNLRGHTEVHALGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRV 438 (927)
Q Consensus 389 D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgdR~~~I~~ 438 (927)
++++.|.+..... .+...|..+...=-+.|...|. |...|.+
T Consensus 372 ~~yl~v~~~a~~~-------~~~~~w~G~veSr~r~Lv~~le-~~~~i~~ 413 (514)
T 1q79_A 372 KHYIVLLASAPTE-------KQRLEWVGLVESKIRILVGSLE-KNEFITL 413 (514)
T ss_dssp SEEEEEEEEESSH-------HHHHHHHHHHHTTHHHHHHHHH-TSTTEEE
T ss_pred ceEEEEEEEECCH-------HHhhhheehhhhhHHHHHHHhc-cCCCcee
Confidence 9999998643211 1224455444332334445565 4655554
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-11 Score=137.44 Aligned_cols=272 Identities=16% Similarity=0.225 Sum_probs=190.5
Q ss_pred cccCcccccHHHHhccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEee
Q 002406 8 TLTDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGG 87 (927)
Q Consensus 8 ~~~~~f~LQidELL~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvG 87 (927)
.....+--+|.++.+.++|.... .+.-++++.+|++++.++-+ -.+|.++|
T Consensus 16 ~~~~~L~~Ei~~f~~~i~Pt~eE--~~~R~~~~~~l~~~~~~~~p---------------------------~~~v~~fG 66 (323)
T 3nyb_A 16 EISDWLTFEIKDFVAYISPSREE--IEIRNQTISTIREAVKQLWP---------------------------DADLHVFG 66 (323)
T ss_dssp SHHHHHHHHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHTTCT---------------------------TCCEEEES
T ss_pred hHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHHHHHHHCC---------------------------CCEEEEeC
Confidence 34445667788888888887555 34667888888888776521 12578999
Q ss_pred eeecccccCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeEEEEeCCC
Q 002406 88 SYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVK 167 (927)
Q Consensus 88 S~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~~~ 167 (927)
|++.|+.. ++..||+.|..|..... .| -.|..+++.|++.+...+|... .+++.|||.+.-..
T Consensus 67 S~~~g~~~-~~SDiDl~v~~~~~~~~-----------~~-~~l~~l~~~L~~~~~~~~v~~I---~~ArVPIIk~~~~~- 129 (323)
T 3nyb_A 67 SYSTDLYL-PGSDIDCVVTSELGGKE-----------SR-NNLYSLASHLKKKNLATEVEVV---AKARVPIIKFVEPH- 129 (323)
T ss_dssp TTTTTCCC-TTSCEEEEECSSCCGGG-----------HH-HHHHHHHHHHHHTTSCSSCEEE---ESSSCEEEEEEETT-
T ss_pred ccccCCCC-CCCCceEEEecCCCChh-----------HH-HHHHHHHHHHhhCCCceEEEEE---eccCCCEEEEEEcC-
Confidence 99998755 45889999999975321 12 3566899999887666566543 36789999887432
Q ss_pred CCCCCCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhChHHHHHHHHHH
Q 002406 168 SVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILL 247 (927)
Q Consensus 168 ~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~Ll 247 (927)
+++.|.|-.. |. +...| ..++.......|.|+..++++
T Consensus 130 ----~gi~vDIs~~---------------~~-----------~g~~~------------t~li~~~~~~~~~~r~lv~~i 167 (323)
T 3nyb_A 130 ----SGIHIAVSFE---------------RT-----------NGIEA------------AKLIREWLDDTPGLRELVLIV 167 (323)
T ss_dssp ----TTEEEEEESS---------------CS-----------STTHH------------HHHHHHHHHSCTTHHHHHHHH
T ss_pred ----CCceEEEEec---------------Cc-----------HHHHH------------HHHHHHHHHhhhhHHHHHHHH
Confidence 3577777541 11 11223 344555566789999999999
Q ss_pred HHHHHhcCCCcc-CCCchhHHHHHHHHHHhhcc------ccCcCCcHHHHHHHHHHHHh-cCCCCCCceeecCCCCCCCC
Q 002406 248 KVWARQRSSIYV-HDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVS 319 (927)
Q Consensus 248 kvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~------~l~~~~SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~ 319 (927)
|.|+++||++.. .||+|+|.|++|+++.||.. .+.+..|.-+++..+++|.+ +.||.+.+|.+...+....+
T Consensus 168 K~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~ 247 (323)
T 3nyb_A 168 KQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFP 247 (323)
T ss_dssp HHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEE
T ss_pred HHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCCcceee
Confidence 999999998754 58899999999999999942 23345677899999999999 99998888876432100011
Q ss_pred hhHHHhh---hhcCCEEEeCCCCc-eeeccCCCHHHHHHHHHHHHHHHHHhhcc
Q 002406 320 KEEKLQY---KEAFPVVICDPSAQ-VNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (927)
Q Consensus 320 ~~~~~~~---~~~f~vvf~D~sg~-~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~ 369 (927)
...-..+ +..+.+.+.||... .|+.... ..++.+|+|.+.|.++|.+.
T Consensus 248 k~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 248 KSTWSAIQPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGAFDLLTNR 299 (323)
T ss_dssp GGGCGGGCSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHHHHHHHHHh
Confidence 1100011 22467777899885 6676653 46889999999999999863
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.27 E-value=3.4e-10 Score=128.95 Aligned_cols=285 Identities=16% Similarity=0.189 Sum_probs=191.5
Q ss_pred ccccHHHHhccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeeeecc
Q 002406 13 MDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSIN 92 (927)
Q Consensus 13 f~LQidELL~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~ 92 (927)
+.-+|.++++.++|.... ...-++++.+|+++|.++-+ -..|.++||++.|
T Consensus 44 L~~~i~~~~~~i~Pt~eE--~~~R~~v~~~l~~~i~~~~p---------------------------~~~v~~fGS~~~G 94 (405)
T 4e8f_A 44 FTKFCYEVYNEIKISDKE--FKEKRAALDTLRLCLKRISP---------------------------DAELVAFGSLESG 94 (405)
T ss_dssp HHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHHHHCT---------------------------TCEEEEESHHHHT
T ss_pred HHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHHCC---------------------------CCEEEEEeeccCC
Confidence 455688888888887655 45677788888887765411 1257799999999
Q ss_pred cccCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeEEEE-eCCCCCCC
Q 002406 93 CVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVY-PAVKSVEA 171 (927)
Q Consensus 93 t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil~l~-p~~~~~~~ 171 (927)
+..+ +..|||.|..|... +.+ -++..+++.|++. ..++. .-..++.|||.+. -.... ..
T Consensus 95 ~~~~-~SDiDl~v~~~~~~-~~~------------~~l~~l~~~L~~~--~~~v~---~i~~ArVPIIK~~~d~~~g-~~ 154 (405)
T 4e8f_A 95 LALK-NSDMDLCVLMDSRV-QSD------------TIALQFYEELIAE--GFEGK---FLQRARIPIIKLTSDTKNG-FG 154 (405)
T ss_dssp CCBS-SCCEEEEEECCC----CT------------THHHHHHHHHHHT--TEEEE---EEEETTEEEEEEEEESSSS-CC
T ss_pred CCCC-CCCEEEEEEecCCC-CHH------------HHHHHHHHHHHhc--CCeeE---EeccCCCcEEEEEeccCCC-cc
Confidence 8765 56999999998742 111 1566788888765 23333 2246788998876 22110 00
Q ss_pred CCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 002406 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWA 251 (927)
Q Consensus 172 ~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl 251 (927)
.++.+.|-. ||. ...+|+ .++....+..|.|+..++++|.|+
T Consensus 155 ~gi~~DIs~---------------~n~-----------~g~~~t------------~ll~~y~~~~p~~r~Lv~~lK~wa 196 (405)
T 4e8f_A 155 ASFQCDIGF---------------NNR-----------LAIHNT------------LLLSSYTKLDARLKPMVLLVKHWA 196 (405)
T ss_dssp TTCCEEEEE---------------SCH-----------HHHHHH------------HHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred CceEEEEee---------------ccc-----------chHHHH------------HHHHHHHhhCHHHHHHHHHHHHHH
Confidence 034444432 111 112333 334444556799999999999999
Q ss_pred HhcCCCcc-CCCchhHHHHHHHHHHh-hccc--c--------------------------------CcCCcHHHHHHHHH
Q 002406 252 RQRSSIYV-HDCLNGYLISILLSYLV-SLDK--I--------------------------------NNSMKALQILRVVL 295 (927)
Q Consensus 252 ~QRg~~~~-~~gf~gf~~s~lla~Ll-~~~~--l--------------------------------~~~~SsyQifr~~l 295 (927)
++||++.. .||+|+|.|++|+++.+ |... + ....|--+++..++
T Consensus 197 k~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF 276 (405)
T 4e8f_A 197 KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFF 276 (405)
T ss_dssp HHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHH
T ss_pred HHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHH
Confidence 99998754 68899999999999988 5322 1 12367889999999
Q ss_pred HHHh-cCCCCCCceeecCCCCCCCChhHHHhh--------------hhcCCEEEeCCCC-ceeeccCCCHHHHHHHHHHH
Q 002406 296 DFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQY--------------KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEA 359 (927)
Q Consensus 296 ~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA 359 (927)
+|.+ ..||.+.+|.+...+ ..++.+. ..| ...+...+-||-- ..|+...++...+..+|.|.
T Consensus 277 ~yY~~~Fd~~~~vIsir~~g-~~~~K~~-k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF 354 (405)
T 4e8f_A 277 RFYAYKFEPREKVVTFRRPD-GYLTKQE-KGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEF 354 (405)
T ss_dssp HHHHHTCCTTTBEECSSSTT-CCCBHHH-HTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHH
T ss_pred HHHhcccCCCCcEEEEecCC-ccccccc-ccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHH
Confidence 9999 899987777765222 1222211 111 2345677789976 68999999999999999999
Q ss_pred HHHHHHhhcc-CCCccccccccccccccc
Q 002406 360 ASTLQCMDKC-GDGGFEETFLTKIDFPAK 387 (927)
Q Consensus 360 ~~tl~~L~~~-~~d~F~~lFl~~~~~~~~ 387 (927)
+.|.++|.+. ..+.|+.|| .+.+++.+
T Consensus 355 ~rA~~iL~~~~~~~~w~~Lf-~~~~~~~~ 382 (405)
T 4e8f_A 355 MAASRLLNSRSYPIPYDSLF-EEAPIPPR 382 (405)
T ss_dssp HHHHHHHTCSSSSCCGGGGG-SCCCCC--
T ss_pred HHHHHHHhhhccCCCHHHHh-CcCCCccc
Confidence 9999999874 356788888 55555543
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.23 E-value=4.7e-10 Score=125.37 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=170.4
Q ss_pred HHHHhccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeeeecccccC
Q 002406 17 VEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVK 96 (927)
Q Consensus 17 idELL~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k 96 (927)
+.|+.++++|.... .+.-+.++.+|+.+|.++= |=.+|.++||++.|+..+
T Consensus 20 ~~~l~~~~~pt~~e--~~~R~~~~~~l~~~i~~~~---------------------------p~~~v~~fGS~~~g~~~~ 70 (349)
T 4fh3_A 20 CYEVYNEIKISDKE--FKEKRAALDTLRLCLKRIS---------------------------PDAELVAFGSLESGLALK 70 (349)
T ss_dssp HHHHHHHHBCCHHH--HHHHHHHHHHHHHHHHTTC---------------------------TTCEEEEESHHHHTCCBS
T ss_pred HHHHHHHcCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEeeccCCCCCC
Confidence 34556667776554 3455667777777765431 113577999999988665
Q ss_pred CCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeEEEEeCCCCCCCCCeEE
Q 002406 97 PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFV 176 (927)
Q Consensus 97 ~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~~~~~~~~~~~i 176 (927)
+..||+.|..|...= +..+...+...+.+.. .++.. -..++.|||...-........++.+
T Consensus 71 -~SDiDl~v~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~---i~~ArVPiik~~~~~~~~~~~~~~~ 131 (349)
T 4fh3_A 71 -NSDMDLCVLMDSRVQ-------------SDTIALQFYEELIAEG--FEGKF---LQRARIPIIKLTSDTKNGFGASFQC 131 (349)
T ss_dssp -SCCEEEEEECCTTSC-------------HHHHHHHHHHHHHHTT--EEEEE---EEETTEEEEEEEEESSSSSCTTCCE
T ss_pred -CCCEEEEEecCCCCC-------------hHHHHHHHHHHHHhhc--ccceE---eeeeeeeeEEEEeccccccccccee
Confidence 568999999986431 1122223333333321 12221 1246778876653221111112222
Q ss_pred EEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcCC
Q 002406 177 RIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSS 256 (927)
Q Consensus 177 Ri~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~ 256 (927)
.|-. ||. ... ....++.......|.|+..++++|.||++||+
T Consensus 132 Dis~---------------~~~-----------~g~------------~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l 173 (349)
T 4fh3_A 132 DIGF---------------NNR-----------LAI------------HNTLLLSSYTKLDARLKPMVLLVKHWAKRKQI 173 (349)
T ss_dssp EEEE---------------SCH-----------HHH------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTC
T ss_pred ecCc---------------Ccc-----------hHH------------HHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCC
Confidence 2211 111 112 23445555666779999999999999999998
Q ss_pred Ccc-CCCchhHHHHHHHHHHhhccccC-----------------------------------cCCcHHHHHHHHHHHHh-
Q 002406 257 IYV-HDCLNGYLISILLSYLVSLDKIN-----------------------------------NSMKALQILRVVLDFIA- 299 (927)
Q Consensus 257 ~~~-~~gf~gf~~s~lla~Ll~~~~l~-----------------------------------~~~SsyQifr~~l~fLa- 299 (927)
+.. .||+|+|.|++|+++.||..... ...|.-+++..++.|.+
T Consensus 174 ~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~ 253 (349)
T 4fh3_A 174 NSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAY 253 (349)
T ss_dssp CCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhh
Confidence 754 58899999999999988743211 12467799999999998
Q ss_pred cCCCCCCceeecCCCCCCCChh-------------HHHhhhhcCCEEEeCCCC-ceeeccCCCHHHHHHHHHHHHHHHHH
Q 002406 300 TSKLWNRGLYFPPKGQIGVSKE-------------EKLQYKEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQC 365 (927)
Q Consensus 300 ~~d~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~ 365 (927)
..||.+.+|.+...+ .-.+.. ........+...+.||-- ..|+...++..++..+|.|.+.|.++
T Consensus 254 ~Fd~~~~vIsi~~~~-~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~ 332 (349)
T 4fh3_A 254 KFEPREKVVTFRRPD-GYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRL 332 (349)
T ss_dssp TCCTTTBCBCSSSTT-CCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEecCCC-CccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 589987666553321 111110 011122334555679864 78999999999999999999999999
Q ss_pred hhcc-CCCcccccc
Q 002406 366 MDKC-GDGGFEETF 378 (927)
Q Consensus 366 L~~~-~~d~F~~lF 378 (927)
|.+. ....|+.+|
T Consensus 333 L~~~~~~~~~~~lf 346 (349)
T 4fh3_A 333 LNSRSYPIPYDSLF 346 (349)
T ss_dssp HHCCSSSCCGGGGG
T ss_pred HhCcccCCCHHHHh
Confidence 9864 234677777
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=99.06 E-value=5.2e-09 Score=117.32 Aligned_cols=234 Identities=15% Similarity=0.098 Sum_probs=158.3
Q ss_pred ceeeEeeeee-cccccCCCCceeEEEecCccccCcccccccc-hh--HHHHhHHHHHHHhhccCCCCCceEeecCCCCCc
Q 002406 81 KTFKIGGSYS-INCVVKPAVNVDLFVGLPKECFHEKDYLNHR-YH--AKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEAR 156 (927)
Q Consensus 81 ~~v~vvGS~~-l~t~~k~~~~VDl~V~mP~~~fq~KDylN~R-Y~--~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~ 156 (927)
..|.+.||++ .|.. -++.+||+.|..|...-..| ..+.+ .. .-+.-+|..+++.|++.+...+|.- -.+++
T Consensus 67 ~~v~~FGS~~vtGl~-lp~SDIDl~v~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~---i~~Ar 141 (353)
T 2ikf_A 67 MRLYTFGSTVVYGVH-EKGSDVDFVVLNKTDVEDGK-GGDAATQVAKGLQADILAKLARVIRQKHLSWNVEE---VRRTR 141 (353)
T ss_dssp CEEEEESHHHHHSSC-CTTCCEEEEEECHHHHHSTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEE---ECSSS
T ss_pred cEEEEecCccccCCC-CCCcceeEEEeecccccccc-cccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEE---ecccc
Confidence 4688999998 7764 45789999999987542111 01111 00 0124567789999987766555542 25789
Q ss_pred ceeEEEEeCCCCCCCCCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhC
Q 002406 157 KPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISR 236 (927)
Q Consensus 157 kPil~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~ 236 (927)
.|||.+.-. .++.+.|-. ||. ...+|+ +++....+.
T Consensus 142 VPIiK~~~~------~~i~~Dis~---------------~n~-----------~g~~~t------------~ll~~~~~~ 177 (353)
T 2ikf_A 142 VPVVRVKGG------GAVDFDITA---------------YRR-----------NGVRNS------------ALLRAYFEQ 177 (353)
T ss_dssp SCEEEEECS------SSCEEEEEE---------------SCC-----------HHHHHH------------HHHHHHHHH
T ss_pred eeEEEEEcC------CCcEEEEEe---------------cCc-----------cHHHHH------------HHHHHHHHh
Confidence 999988751 245555543 121 113333 444455566
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcc-C-CCchhHHHHHHHHHHhhccc----cC-----------------------cCCcH
Q 002406 237 WKELGEALILLKVWARQRSSIYV-H-DCLNGYLISILLSYLVSLDK----IN-----------------------NSMKA 287 (927)
Q Consensus 237 ~~~f~dA~~LlkvWl~QRg~~~~-~-~gf~gf~~s~lla~Ll~~~~----l~-----------------------~~~Ss 287 (927)
.|.|+..++++|.|+++||++.. . ||+|+|.|++|+++.||+.+ +. ...|.
T Consensus 178 ~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~sl 257 (353)
T 2ikf_A 178 NPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLEL 257 (353)
T ss_dssp STTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHH
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccH
Confidence 79999999999999999998764 4 78999999999999997432 11 23456
Q ss_pred HHHHHHHHHHHh-cCCCCCCceeecCCCCCCCChhHHHhh-------------hhcCCEEEeCCCC-ceeeccCCCHHHH
Q 002406 288 LQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQY-------------KEAFPVVICDPSA-QVNLAFRMTSVGF 352 (927)
Q Consensus 288 yQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~f~vvf~D~sg-~~Nl~~~~t~~s~ 352 (927)
-+++..+++|.+ ..||.+.+|.+...+ ..+... ..+ ...+...+.||-- ..|+..+++...+
T Consensus 258 g~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--~~~k~~-~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~ 334 (353)
T 2ikf_A 258 GTQVLDFLHFFLHEFDSDKQVISLNRPG--ITTKEE-LDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKR 334 (353)
T ss_dssp HHHHHHHHHHHHHTSCTTTEEECSSSSS--CEEHHH-HTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHH
T ss_pred HHHHHHHHHHhccccCcCceEEEcCCCc--ceechh-hcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHH
Confidence 789999999999 799987676654321 122111 111 1234566689966 5899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 002406 353 CELQDEAASTLQCM 366 (927)
Q Consensus 353 ~~L~~eA~~tl~~L 366 (927)
+.+|.|-+.+.+.+
T Consensus 335 ~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 335 DFLRRHLEKARDTA 348 (353)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=98.90 E-value=1.6e-07 Score=107.88 Aligned_cols=274 Identities=16% Similarity=0.172 Sum_probs=151.3
Q ss_pred cCcccccHHHHhccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeee
Q 002406 10 TDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89 (927)
Q Consensus 10 ~~~f~LQidELL~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~ 89 (927)
..++.-||.++.+.++|.... .+.=..++.+|+++|.++= |-..|.+.||+
T Consensus 131 a~sl~~EI~~f~~~i~PT~eE--~~~R~~vv~~le~ii~~~f---------------------------P~a~V~~FGS~ 181 (464)
T 3pq1_A 131 AESIDDQLNTLLKEFQLTEEN--TKLRYLTCSLIEDMAAAYF---------------------------PDCIVRPFGSS 181 (464)
T ss_dssp SSSHHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHTTTS---------------------------TTCEEEEEGGG
T ss_pred cchHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEeCCC
Confidence 456777888888888887555 3344566777777776531 11467799999
Q ss_pred ecccccCCCCceeEEEecCcc-c-------------cCcccccccchhHHHHhHHHHHHHhhccCC-CCCceEeecCCCC
Q 002406 90 SINCVVKPAVNVDLFVGLPKE-C-------------FHEKDYLNHRYHAKRCLYLCVIKKHLKSSP-SFDKVEWSAMQNE 154 (927)
Q Consensus 90 ~l~t~~k~~~~VDl~V~mP~~-~-------------fq~KDylN~RY~~KRA~YLa~ia~~L~~~~-~~~~v~~~~~~~d 154 (927)
+.|.. -++..|||.|..|.. - ||-|.--+.|+-.. ..|..|++.|++.. .+.++. .-..
T Consensus 182 ~tGL~-lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~--~iL~~la~~L~~~~~~~~~v~---~I~~ 255 (464)
T 3pq1_A 182 VNTFG-KLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQ--KILSVLGECLDHFGPGCVGVQ---KILN 255 (464)
T ss_dssp TSSCC-BTTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHH--HHHHHHHHHHHHSSTTEEEEE---EECS
T ss_pred ccCCC-CCCCCeEEEEecCCcccccccccccchhhhhhhccchhhHHHHH--HHHHHHHHHHHhcCCCCceeE---EecC
Confidence 98765 457889999988763 1 22222222233222 34566888887642 233343 2346
Q ss_pred CcceeEEEEeCCCCCCCCCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHh
Q 002406 155 ARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTI 234 (927)
Q Consensus 155 ~~kPil~l~p~~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~ 234 (927)
++.|||...-.. +++.+.|-. || ....+|+ +++....
T Consensus 256 ARVPIIKf~~~~-----tgi~~DIS~---------------nn-----------~~gi~ns------------~ll~~y~ 292 (464)
T 3pq1_A 256 ARCPLVRFSHQA-----SGFQCALTT---------------NN-----------RIALTSS------------ELLYIYG 292 (464)
T ss_dssp SSSCEEEEEETT-----TCCEEEEEC---------------SC-----------TTHHHHH------------HHHHHHH
T ss_pred CCCCEEEEEEcC-----CCeEEEEec---------------CC-----------CcHHHHH------------HHHHHHH
Confidence 889999887542 245565543 22 1223444 4445556
Q ss_pred hChHHHHHHHHHHHHHHHhcCCCcc-CCC-chhHHHHHHHHHHhhccc--cCcCCcHHHHHHHH--HHHHhcC------C
Q 002406 235 SRWKELGEALILLKVWARQRSSIYV-HDC-LNGYLISILLSYLVSLDK--INNSMKALQILRVV--LDFIATS------K 302 (927)
Q Consensus 235 ~~~~~f~dA~~LlkvWl~QRg~~~~-~~g-f~gf~~s~lla~Ll~~~~--l~~~~SsyQifr~~--l~fLa~~------d 302 (927)
+..|.++.-+.++|.|+++||++.. .|| +++|.|.+|+.+.+|... +-+.....+-+..- -..+..+ |
T Consensus 293 ~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~d 372 (464)
T 3pq1_A 293 ALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRD 372 (464)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------
T ss_pred HhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeecccccccccc
Confidence 6789999999999999999998765 477 899999999999998542 22211111100000 0000000 0
Q ss_pred CCCCceeecCCCCCCCCh-hHHHhhhhc---CCE--EEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhc
Q 002406 303 LWNRGLYFPPKGQIGVSK-EEKLQYKEA---FPV--VICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDK 368 (927)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~---f~v--vf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~ 368 (927)
+. .+....+ ..+. +.+-.|-+. |+- -.+ +-.+|+..+++...++.++.+++.|+-+|..
T Consensus 373 l~--~l~~~~N---~~slgeLL~gFF~yYa~FDf~~~vI--sI~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 373 LS--RIKPSQN---TETLELLLKEFFEYFGNFAXXXXXX--XXXXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp --------CCC---CCCHHHHHHHHHHHGGGCCCCCCCC--CCC-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred Hh--hcCCCCC---cCCHHHHHHHHHHHHHhCCCccccc--ccccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 00 0000000 0111 112222222 221 001 1168999999999999999999999999984
No 8
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=98.72 E-value=7.1e-07 Score=99.79 Aligned_cols=300 Identities=16% Similarity=0.195 Sum_probs=169.7
Q ss_pred cHHHHh-ccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeeeecccc
Q 002406 16 KVEELL-KEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCV 94 (927)
Q Consensus 16 QidELL-~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~ 94 (927)
|+++.+ ..|+|+... ...+.+....|.+.|++.--... . .... -.++..+|||+-+|+
T Consensus 10 ~l~~fi~~~l~p~~~~--~~~i~~~~~~I~~~L~~~~~~~~----~----------~~~~-----v~~v~~~GSyargT~ 68 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXF--RTQVKEAIDIVXRFLKERCFQGT----A----------DPVR-----VSKVVKGGSSGKGTT 68 (349)
T ss_dssp GHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHHHTTCC-----------------CCE-----EEEEEEEEEC-----
T ss_pred HHHHHHHhccCCCHHH--HHHHHHHHHHHHHHHHhhhcccc----c----------CCcc-----eEEEEEecCcCCCcc
Confidence 577777 788888555 55788888888888875311100 0 0000 024558899999999
Q ss_pred cCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccC--CCCCceEeecCCCCCcce-eEEEEeCCCCCCC
Q 002406 95 VKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS--PSFDKVEWSAMQNEARKP-VLVVYPAVKSVEA 171 (927)
Q Consensus 95 ~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~--~~~~~v~~~~~~~d~~kP-il~l~p~~~~~~~ 171 (927)
+++...|||+|.+|.. -...|.+ ..+.-+|..|-+.|.+. ....++.++........| .+.+.-.... ..
T Consensus 69 lrg~sDiDlvV~l~~~-~~~~~~~-----~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~-~~ 141 (349)
T 1px5_A 69 LRGRSDADLVVFLTKL-TSFEDQL-----RRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQ-LQ 141 (349)
T ss_dssp ---CEEEEEEEEEESC-SCTTHHH-----HTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETT-TT
T ss_pred cCCCCceeEEEEECCC-CchhhHH-----hhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccC-cC
Confidence 9999999999999962 1222333 34555666666666531 011122233221222344 2333322110 11
Q ss_pred CCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhh-----------ccChHHHHHHHHHHhhChHHH
Q 002406 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILE-----------DMFLEDNAEYVEKTISRWKEL 240 (927)
Q Consensus 172 ~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~-----------D~~~~~~l~~l~~~~~~~~~f 240 (927)
.++.|.|.||... ++.... +..+..-.|...|-. -.....|.+++.+ ....+
T Consensus 142 ~~~~vDVvPa~~~-------------l~~~~~-~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~ 204 (349)
T 1px5_A 142 QEVEFDVLPAFDA-------------LGQWTP-GYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKL 204 (349)
T ss_dssp EEEEEEEEEEECS-------------SCSCCT-TSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHH
T ss_pred CceEEEEEEehhh-------------hccccc-ccCCChHHHHHHHhhccccccCccchhcCHHHHHHHHHh---CcHHH
Confidence 3588999997421 110000 000111245443322 1123566666653 34689
Q ss_pred HHHHHHHHHHHHhcCCCccCCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeecCCCCCCCCh
Q 002406 241 GEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSK 320 (927)
Q Consensus 241 ~dA~~LlkvWl~QRg~~~~~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~ 320 (927)
++-|+|+|-|.++-+...+..++++|.+-+|++|..+.+.-...++-+|-||.+|++|++.. .-.++....- +...
T Consensus 205 k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~--~~~i~w~~~y--~~~~ 280 (349)
T 1px5_A 205 KSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ--KLCIFWEAYY--DFTN 280 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG--GCEECCCSSC--CSSS
T ss_pred HHHHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--ccceeeeccc--cccc
Confidence 99999999999887643345789999999999999886666667888999999999999742 2234433221 1222
Q ss_pred hHHHhh-----hhcCCEEEeCCCC-ceeeccCCCHHHHHHHHHHHHHHHHHh
Q 002406 321 EEKLQY-----KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCM 366 (927)
Q Consensus 321 ~~~~~~-----~~~f~vvf~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~L 366 (927)
+....| ...-|+| +||.- +-|+.+. +...+++|.++|+..|+..
T Consensus 281 ~~~~~fl~~~l~~~~p~I-~DP~dp~~NVa~~-~~~~~~~~~~~A~~~l~~~ 330 (349)
T 1px5_A 281 PVVGRCMLQQLKKPRPVI-LDPADPTGNVGGG-DTHSWQRLAQEARVWLGYP 330 (349)
T ss_dssp HHHHHHHHHHHTSSSCEE-BCTTCTTCBTTCS-CHHHHHHHHHHHHHHTTSG
T ss_pred hhHHhhhhhhhcCCCCee-eCCCCCCCcccCC-chhhHHHHHHHHHHHHhch
Confidence 233223 2333554 88853 5599999 9999999999998877644
No 9
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=98.65 E-value=1.1e-06 Score=98.53 Aligned_cols=286 Identities=13% Similarity=0.121 Sum_probs=187.9
Q ss_pred cCcccccHHHHhccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeee
Q 002406 10 TDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89 (927)
Q Consensus 10 ~~~f~LQidELL~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~ 89 (927)
.+.|--+|.++.+.++|.... ...-++++.+|+++|.++= |-..|.++||+
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE--~~~R~~vv~~l~~ii~~~~---------------------------p~~~v~~FGS~ 54 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEH--SVVIHELQKRVLDIGMLAV---------------------------NKAHVELFGSH 54 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTH--HHHHHHHHHHHHHHHHHHS---------------------------TTCEEEEESHH
T ss_pred hhHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCcEEEEeeec
Confidence 455777888999999999777 4577888899998887541 11357899999
Q ss_pred ecccccCCCCceeEEEecCccccCcccccccchhHHH-HhH---HHHHHHhhccCCCCCceEeecCCCCCcceeEEEEeC
Q 002406 90 SINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKR-CLY---LCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPA 165 (927)
Q Consensus 90 ~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KR-A~Y---La~ia~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~ 165 (927)
..|... ++..|||.|..|.. .+++.. ..++ +.+ +..+++.+... .+..|.. -.++.|||.+.-.
T Consensus 55 ~tgl~l-p~SDiDlvI~~~~~----~~~~~~--~~~~~~~~~lrll~L~k~~~~~-~ie~V~i----i~ARVPIIKf~d~ 122 (384)
T 3hj4_A 55 VSGFCT-PHSDADISLTYRNF----SPWLQG--MERVDEQNNKRMTRFGKEASAM-GMEDVRY----IRARIPVVQFTDG 122 (384)
T ss_dssp HHSCCC-TTCCEEEEEECTTC----CGGGTT--CHHHHHHHHHHHHHHHHHHHHH-TCEEEEE----ECSSSCEEEEECT
T ss_pred cCCCCC-CCCCeeEEEecCCC----cccccc--cchhhHHHHHHHHHHHhhcccC-CeeEEee----cCcccCEEEEEEc
Confidence 998754 56889999998763 122111 1111 111 22233333221 1223332 2578999988643
Q ss_pred CCCCCCCCeEEEEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhChHH-HHHHH
Q 002406 166 VKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE-LGEAL 244 (927)
Q Consensus 166 ~~~~~~~~~~iRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~-f~dA~ 244 (927)
.+++.+.|-. ||. ...+|+ +++....+.+|. ++.-+
T Consensus 123 -----~tgi~~DIS~---------------nn~-----------~gi~ns------------~ll~~y~~~~p~rlr~Lv 159 (384)
T 3hj4_A 123 -----VTGIHCDVSI---------------GNI-----------GGVENS------------KILCAIRQVFPDFYGAYI 159 (384)
T ss_dssp -----TTCCEEEEEE---------------CCH-----------HHHHHH------------HHHHHHHHTSHHHHHHHH
T ss_pred -----CCCeEEEEEe---------------ccc-----------chHHHH------------HHHHHHHhcCcHHHHHHH
Confidence 2346666654 121 112333 344555556565 99999
Q ss_pred HHHHHHHHhcCCCcc-CCCchhHHHHHHHHHHhhccccCc-----------------------------------CCcH-
Q 002406 245 ILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINN-----------------------------------SMKA- 287 (927)
Q Consensus 245 ~LlkvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~~l~~-----------------------------------~~Ss- 287 (927)
.++|.|+++||++.. .||+|+|.|++|+++.||...+-+ .-.+
T Consensus 160 llvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sL 239 (384)
T 3hj4_A 160 HLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKL 239 (384)
T ss_dssp HHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccH
Confidence 999999999998755 588999999999999888221111 1112
Q ss_pred ----HHHHHHHHHHHhcCCCCCCceeecCCCC----------------------------------CCCChhHH------
Q 002406 288 ----LQILRVVLDFIATSKLWNRGLYFPPKGQ----------------------------------IGVSKEEK------ 323 (927)
Q Consensus 288 ----yQifr~~l~fLa~~d~~~~~i~~~~~~~----------------------------------~~~~~~~~------ 323 (927)
+|++..+++|-+.-||.+..|.+...+. +..+....
T Consensus 240 geL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 319 (384)
T 3hj4_A 240 GEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQN 319 (384)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCc
Confidence 2458999999999999887777643221 11111000
Q ss_pred --HhhhhcCCEEEeCCCCceeeccCCCHHHHHHHHHHHHHHHHHhhc-cCCCccccccc
Q 002406 324 --LQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDK-CGDGGFEETFL 379 (927)
Q Consensus 324 --~~~~~~f~vvf~D~sg~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~-~~~d~F~~lFl 379 (927)
..-...++.++=|--.++|..-+++++....+|.|-+++.++|-+ ...-.|+++|-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
T 3hj4_A 320 ETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFR 378 (384)
T ss_dssp HHHTSCSSSSCCBBCTTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGGCCHHHHTC
T ss_pred cccccccccceeeeeeccccccceecCccchhHHHHHHHHHHHHHhcccccccHHHHhh
Confidence 011223566657988999999999999999999999999999976 56678999884
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=98.35 E-value=2.6e-06 Score=96.91 Aligned_cols=238 Identities=17% Similarity=0.234 Sum_probs=159.3
Q ss_pred HHHHhccccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeeeecccccC
Q 002406 17 VEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVK 96 (927)
Q Consensus 17 idELL~ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k 96 (927)
.+|.++.++|+... .+.+.+..+.|++.|++ . +.++..+|||+=+|.++
T Consensus 7 ~~~~l~~i~P~~~E--~~~~~~~~~~I~~~L~~---~--------------------------~~~v~~~GS~AkgT~Lr 55 (437)
T 1r89_A 7 LEKALELVIPDEEE--VRKGREAEEELRRRLDE---L--------------------------GVEYVFVGSYARNTWLK 55 (437)
T ss_dssp HHHHHHHHSCCHHH--HHHHHHHHHHHHHHHHH---H--------------------------TCCEEEEHHHHHTCCCT
T ss_pred HHHHHHhhCCCHHH--HHHHHHHHHHHHHHHHh---C--------------------------CCeEEEeccccCCCcCC
Confidence 35677788888666 56788888888888876 0 12466889999999999
Q ss_pred CCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhccCCCCCceEeecCCCCCcceeEEEEeCCCCCCCCCeEE
Q 002406 97 PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFV 176 (927)
Q Consensus 97 ~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~~~~~~~~~~~i 176 (927)
+...|||.|-+|.+. .++.|+. + .+..+-+.+++ ..++|. -.|.+.+.-. ++.|
T Consensus 56 g~sDIDIfv~f~~~~--~~e~l~~-----~--~l~~~~e~l~~----~~~~ya------~hpyV~~~f~-------g~~v 109 (437)
T 1r89_A 56 GSLEIDVFLLFPEEF--SKEELRE-----R--GLEIGKAVLDS----YEIRYA------EHPYVHGVVK-------GVEV 109 (437)
T ss_dssp TCCEEEEEEEECTTS--CHHHHHH-----H--HHHHHHHHSSS----EEEEES------SSEEEEEEET-------TEEE
T ss_pred CCCCceEEEEcCCCC--CHHHHHH-----H--HHHHHHHHHHH----hhhhcc------CCceEEEEec-------ceEE
Confidence 999999999999773 2333422 1 23334444442 234443 4566655442 5899
Q ss_pred EEEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcCC
Q 002406 177 RIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSS 256 (927)
Q Consensus 177 Ri~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~ 256 (927)
-|.||..-.- .+ .++ | ++ |. ...|.+++.+-..+ +++-++|+|-|+++=|.
T Consensus 110 DVVP~y~v~~------g~--~~~----------t-----av--Dr-tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ 160 (437)
T 1r89_A 110 DVVPCYKLKE------PK--NIK----------S-----AV--DR-TPFHHKWLEGRIKG---KENEVRLLKGFLKANGI 160 (437)
T ss_dssp EEEEEECCSS------SS--CCC----------S-----HH--HH-HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEccC------Cc--ccc----------c-----cc--cC-cHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCc
Confidence 9999842000 00 011 1 11 21 13677887754444 88999999999999886
Q ss_pred Ccc---CCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeecCCCCCCCChhHHHhhhhcCCEE
Q 002406 257 IYV---HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVV 333 (927)
Q Consensus 257 ~~~---~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~f~vv 333 (927)
++. .+||+||.+=+|+++ |.-|+.+++.+++ |. .++...... .. ..| .-|++
T Consensus 161 ygse~k~~gfSsYllELLv~~-------------yG~f~~vl~~~~~--w~-~~~~Id~~~----~~---~~~--~~Plv 215 (437)
T 1r89_A 161 YGAEYKVRGFSGYLCELLIVF-------------YGSFLETVKNARR--WT-RRTVIDVAK----GE---VRK--GEEFF 215 (437)
T ss_dssp BCCSTTTCCBCHHHHHHHHHH-------------HSSHHHHHHHHTT--CC-TTEEEEGGG----TE---EEE--CSSCE
T ss_pred CCCcccCCCCCHHHHHHHHHH-------------HcCHHHHHHHHHH--hC-CCeEEecCC----Cc---ccC--CCCEE
Confidence 533 578999999999999 3468899998874 43 344431110 00 011 34887
Q ss_pred EeCCCC-ceeeccCCCHHHHHHHHHHHHHHHHH
Q 002406 334 ICDPSA-QVNLAFRMTSVGFCELQDEAASTLQC 365 (927)
Q Consensus 334 f~D~sg-~~Nl~~~~t~~s~~~L~~eA~~tl~~ 365 (927)
++||.- .-|+++.+|...+.++.++|+..++.
T Consensus 216 ViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~ 248 (437)
T 1r89_A 216 VVDPVDEKRNVAANLSLDNLARFVHLCREFMEA 248 (437)
T ss_dssp EEETTEEEEETTTTCCHHHHHHHHHHHHHHHHS
T ss_pred EECCCCCCCchhhcCCHHHHHHHHHHHHHHHhC
Confidence 899964 88999999999999999999887643
No 11
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=98.34 E-value=4.8e-06 Score=96.16 Aligned_cols=141 Identities=13% Similarity=0.242 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhChHH-HHHHHHHHHHHHHhcCCCcc-CCCchhHHHHHHHHHHhhccc---------------cCc----
Q 002406 225 DNAEYVEKTISRWKE-LGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDK---------------INN---- 283 (927)
Q Consensus 225 ~~l~~l~~~~~~~~~-f~dA~~LlkvWl~QRg~~~~-~~gf~gf~~s~lla~Ll~~~~---------------l~~---- 283 (927)
.+-++|....+..|. ++..++++|.|+++||++.. .||+++|.|++|+.+.||..+ +..
T Consensus 257 ~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~~~ 336 (468)
T 2b4v_A 257 KNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDF 336 (468)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCC
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcccccCC
Confidence 334556666667788 99999999999999998754 588999999999888876432 111
Q ss_pred -------CCcHHHHHHHHHHHHh-cCCCCCCceeecCCCCCCCChhHHHhhh--------hcCCEEEeCCCC-----cee
Q 002406 284 -------SMKALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQYK--------EAFPVVICDPSA-----QVN 342 (927)
Q Consensus 284 -------~~SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~~~--------~~f~vvf~D~sg-----~~N 342 (927)
..|--+++..+++|.+ .-||.+.+|.+... +.++... ..|. ..++..+-||-- ..|
T Consensus 337 ~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g--~~~~K~~-~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~N 413 (468)
T 2b4v_A 337 SPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRN--RRSYRSD-IGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLN 413 (468)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSS--SCEEHHH-HTCCCGGGEETTEECSSCBBCSSTTTTTTCCB
T ss_pred CcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCC--cceeccc-ccccccccccCCCcceEEEECCCCCCCCCCcc
Confidence 1356789999999999 88998766665332 1122211 1111 124555578855 599
Q ss_pred eccCCCHHHHHHHHHHHHHHHHHhhc
Q 002406 343 LAFRMTSVGFCELQDEAASTLQCMDK 368 (927)
Q Consensus 343 l~~~~t~~s~~~L~~eA~~tl~~L~~ 368 (927)
+...++...++.++.|.+.|.++|..
T Consensus 414 vgr~v~~~~~~~I~~eF~~A~~~L~~ 439 (468)
T 2b4v_A 414 LVRHLHPAKFQLVKQEFLRAAQCMER 439 (468)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999975
No 12
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=97.35 E-value=0.0029 Score=70.50 Aligned_cols=263 Identities=14% Similarity=0.126 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHhccC----CCCeeeeecccCCcccccccCCCCCCCCCccccccccccCCCCCCccCcEEEEEEec
Q 002406 568 SASLLEAFEVLSKRLHLIE----DIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLE 643 (927)
Q Consensus 568 ~~~v~~af~~L~k~Lr~L~----~LPL~I~~V~p~sp~lRytsv~pp~p~~~~~~~~~~~~~~~~~p~~~~pi~vvlqfE 643 (927)
...+.++.+.+.+.|+... +-|..|..|--..++=|+|.+-+ ..=+|+++-|.
T Consensus 26 ~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg-----------------------~sDiDlvV~l~ 82 (349)
T 1px5_A 26 RTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRG-----------------------RSDADLVVFLT 82 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC-------------------------------CEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCC-----------------------CCceeEEEEEC
Confidence 3468899999999999851 24677878877888888888742 11368999998
Q ss_pred cCCCCCCC-HHHHHHHHHHHHHHHHHHHhhc-----cCCeeee------cCCceeeec------cceeEEEEEeccc---
Q 002406 644 GSGNWPMD-HVAIEKTKSAFLIKIGESLQNR-----WGMTCSA------TEDDADIFM------SGYAFRLKILHER--- 702 (927)
Q Consensus 644 ~SgkWPdd-l~AIq~~K~AF~lkIae~L~~~-----~~~~~~v------~~d~lDV~~------~G~~FRl~I~~~r--- 702 (927)
... .++| ++.. ..++..|.+.|.+. ++....+ .+..+-+.. +|+-|-+..+++.
T Consensus 83 ~~~-~~~~~~~~~----~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~ 157 (349)
T 1px5_A 83 KLT-SFEDQLRRR----GEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQ 157 (349)
T ss_dssp SCS-CTTHHHHTH----HHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCS
T ss_pred CCC-chhhHHhhH----HHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcc
Confidence 653 3444 3222 22333343444432 1222222 111232322 4677777776652
Q ss_pred -------hhHHHhhhcccccccccchhhhHHH---hhhHHHHHHHHHhcCCChhHHHHHHHHHHHhcCC---CCCCcHHH
Q 002406 703 -------GLSLVKSENGNKAKRVYSTDKILFI---RGQHASMINGLQGRYPVFGPVVRVAKRWAASHLF---SACLVEEA 769 (927)
Q Consensus 703 -------E~~Ll~~~~~~~~~~~~~~~~~~~~---~p~h~~~i~~l~~r~paf~~tvRLaKRWl~shlL---s~hi~eE~ 769 (927)
+........... ... ..+..|. -+.|...+.. +..-+-..|||+|+|-..+.. ...++.=+
T Consensus 158 ~~~~~~~~~~~y~~li~~~--~~~-~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~~~~~~~~ssy~ 231 (349)
T 1px5_A 158 WTPGYKPNPEIYVQLIKEC--KSR-GKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYA 231 (349)
T ss_dssp CCTTSCCCHHHHHHHHHHH--HHH-TCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHTTCSSCCCCHHH
T ss_pred cccccCCChHHHHHHHhhc--ccc-ccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhhcccCCCCChHH
Confidence 111110000000 000 0001111 2467776653 444567899999999987642 34689999
Q ss_pred HHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhcCCCCCCeEEEeCCCCCCHHhHHHHHHHH-H-HhhhcccccccCCCC
Q 002406 770 VELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYDWTFSALVVDINNDFGPEDFKVINDNF-M-SSRKASEENVQNVNP 847 (927)
Q Consensus 770 vELLva~vfl~p~p~~~P~S~~~GFlRfL~lLa~~DW~~~PLiVd~~~~lt~~~~~~i~~~F-~-~~R~~~~~dp~~~~p 847 (927)
+|||+++++-+-... ...+-..||.++|.+|+.| +..++...-+.++..+.+ ..| . ..+ .+
T Consensus 232 lELL~~~a~e~~~~~-~~~~~~~~f~~vle~l~~~--~~~~i~w~~~y~~~~~~~----~~fl~~~l~----------~~ 294 (349)
T 1px5_A 232 LELLTVYAWEQGSRK-TDFSTAQGFQTVLELVLKH--QKLCIFWEAYYDFTNPVV----GRCMLQQLK----------KP 294 (349)
T ss_dssp HHHHHHHHHHHHTCC-SSCCHHHHHHHHHHHHHTG--GGCEECCCSSCCSSSHHH----HHHHHHHHT----------SS
T ss_pred HHHHHHHHHHhCCCc-cCCCHHHHHHHHHHHHHhC--CccceeeeccccccchhH----Hhhhhhhhc----------CC
Confidence 999999998753221 2345678999999999985 333333222333333222 122 1 122 23
Q ss_pred eEEEEeCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 002406 848 ALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLT 887 (927)
Q Consensus 848 ~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~~~l~ 887 (927)
.-.|.=|-|+.+... .+ +..=.. .||.+|-..|+
T Consensus 295 ~p~I~DP~dp~~NVa--~~-~~~~~~---~~~~~A~~~l~ 328 (349)
T 1px5_A 295 RPVILDPADPTGNVG--GG-DTHSWQ---RLAQEARVWLG 328 (349)
T ss_dssp SCEEBCTTCTTCBTT--CS-CHHHHH---HHHHHHHHHTT
T ss_pred CCeeeCCCCCCCccc--CC-chhhHH---HHHHHHHHHHh
Confidence 345888899997543 12 444444 44555555554
No 13
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=97.35 E-value=0.00057 Score=80.04 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhcC
Q 002406 729 GQHASMINGLQGRYPVFGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEY 804 (927)
Q Consensus 729 p~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vfl~p~p~~~P~S~~~GFlRfL~lLa~~ 804 (927)
.+.+..|..+-..++.|-.++|++|.|+..+.+. +.++--++.+|||++.-. .| ..|+..=+.+|+++.++|
T Consensus 191 ~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl-~P---~~s~~~LL~~FF~~y~~~ 266 (530)
T 2hhp_A 191 TRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQL-YP---NACSAVILNRFFIILSEW 266 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHH-ST---TCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhc-CC---CCCHHHHHHHHHHHHhcC
Confidence 4677788888778889999999999999998874 478899999999998642 22 356677789999999999
Q ss_pred CCCCCeEEEeCC--CCCCHHhHHHHHHHHHHhhhcccccccCCCCeEEEEeCCCCCCCccccCCCCHHHHHHHHHHHHHH
Q 002406 805 DWTFSALVVDIN--NDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSS 882 (927)
Q Consensus 805 DW~~~PLiVd~~--~~lt~~~~~~i~~~F~~~R~~~~~dp~~~~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s 882 (927)
||. .|++++.. +.+. +..|-.. .++....-.|.|-||.++.-.. |+ .=+..-+.+|..-.+.|
T Consensus 267 dw~-~pV~l~~~~~g~~~----------~~~w~p~--~~~~d~~~~m~Ii~P~~P~~N~-a~-nVs~st~~~I~~Ef~rA 331 (530)
T 2hhp_A 267 NWP-QPVILKPIEDGPLQ----------VRVWNPK--IYAQDRSHRMPVITPAYPSMCA-TH-NITESTKKVILQEFVRG 331 (530)
T ss_dssp CTT-SCEESSCCCCCSSC----------SCCCCTT--TCHHHHTCSSCEECSSSSCCBT-TT-TCCHHHHHHHHHHHHHH
T ss_pred CCC-CceEecccCCCCcc----------ccccCcc--cCCCCCccceeEECCCCCCCcc-Cc-cCCHHHHHHHHHHHHHH
Confidence 998 68887643 2221 0011000 0001123468899999986532 22 34566788999999999
Q ss_pred HHHHHHHhhccCCCcccccccccccCCCCCcccccc
Q 002406 883 ANLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQ 918 (927)
Q Consensus 883 ~~~l~~~~~~~~~~~~~~~~lF~~pl~~~~~~~~~~ 918 (927)
.+++.+... +...|..||.|. .|+-+|.+
T Consensus 332 ~~ll~~i~~----~~~~w~~Lf~~~---~ff~~y~~ 360 (530)
T 2hhp_A 332 VQITNDIFS----NKKSWANLFEKN---DFFFRYKF 360 (530)
T ss_dssp HHHHHHHHT----TSSCHHHHTCCC---CHHHHCSE
T ss_pred HHHHHHHhc----CCCCHHHHcCCC---ChHHhcCe
Confidence 999987542 245799999954 55555543
No 14
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=96.68 E-value=0.0024 Score=74.55 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhcCC
Q 002406 730 QHASMINGLQGRYPVFGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRLLAEYD 805 (927)
Q Consensus 730 ~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vfl~p~p~~~P~S~~~GFlRfL~lLa~~D 805 (927)
+-+..|..+-..++.|-.++|++|.|+..+.+. +.++--.+.+|||++.-. .| ..++..=+.+|+++.++||
T Consensus 205 r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql-~P---~~s~~~LL~~FF~~y~~~d 280 (514)
T 1q79_A 205 RVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL-YP---NAIASTLVHKFFLVFSKWE 280 (514)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHH-ST---TCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHh-CC---CCCHHHHHHHHHHHHhcCC
Confidence 455566666667778999999999999998873 578999999999998542 22 3566666899999999999
Q ss_pred CCCCeEEEe-CC-CCCCHHhHHHHHHHHHHhhhcccccccCCCCeEEEEeCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 002406 806 WTFSALVVD-IN-NDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSA 883 (927)
Q Consensus 806 W~~~PLiVd-~~-~~lt~~~~~~i~~~F~~~R~~~~~dp~~~~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~ 883 (927)
|.+ |+++. .. +.+. +..|-.. .+|..+.-.|.|-||.++.-.. | ..=++.-+.+|..-.+.|.
T Consensus 281 w~~-pV~l~~~~~~~l~----------~~~w~p~--~~~~dr~~~m~IidP~~P~~N~-~-~nVs~st~~~I~~Ef~rA~ 345 (514)
T 1q79_A 281 WPN-PVLLKQPEECNLN----------LPVWDPR--VNPSDRYHLMPIITPAYPQQNS-T-YNVSVSTRMVMVEEFKQGL 345 (514)
T ss_dssp TTS-CBCSSCCCCCSSC----------CCCCCTT--TCGGGGGCSSCBBCSSSSCCBT-T-TTCCHHHHHHHHHHHHHHH
T ss_pred CCC-CeEecccCCCCCC----------CcccCCc--cCCcCcccceeEeCCCCCCCcc-c-ccCCHHHHHHHHHHHHHHH
Confidence 984 66542 21 1111 1111100 0111223459999999986532 2 2344667889999999999
Q ss_pred HHHHHHhhccCCCcccccccccccCCCCCcccccc
Q 002406 884 NLLTKLILEDQTDSCRWEGQVTLPTSPSFPVRSKQ 918 (927)
Q Consensus 884 ~~l~~~~~~~~~~~~~~~~lF~~pl~~~~~~~~~~ 918 (927)
+++.+... + ..+|..||.|. .|+-+|.+
T Consensus 346 ~il~~i~~-~---~~~w~~Lf~~~---~ff~~y~~ 373 (514)
T 1q79_A 346 AITDEILL-S---KAEWSKLFEAP---NFFQKYKH 373 (514)
T ss_dssp HHHHHHHT-T---SSCHHHHTCCC---CHHHHCSE
T ss_pred HHHHHHhc-C---CCCHHHHhCCc---chhhhcce
Confidence 99987543 2 45799999953 45555543
No 15
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=96.67 E-value=0.027 Score=62.71 Aligned_cols=214 Identities=14% Similarity=0.175 Sum_probs=122.1
Q ss_pred EEEEEEecc---CCCCCCCHH-HHHHHHHHHHHHHHHHHhhccCCeeee---cCCceeee--ccceeEEEEEeccchhHH
Q 002406 636 LEVMIQLEG---SGNWPMDHV-AIEKTKSAFLIKIGESLQNRWGMTCSA---TEDDADIF--MSGYAFRLKILHERGLSL 706 (927)
Q Consensus 636 i~vvlqfE~---SgkWPddl~-AIq~~K~AF~lkIae~L~~~~~~~~~v---~~d~lDV~--~~G~~FRl~I~~~rE~~L 706 (927)
||++|.... +|+|++... ..+.++..++.++++.|++. +....+ ....+=|+ .+|....+-|....
T Consensus 87 IDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n---- 161 (353)
T 2ikf_A 87 VDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQK-HLSWNVEEVRRTRVPVVRVKGGGAVDFDITAYR---- 161 (353)
T ss_dssp EEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEECSSSSCEEEEECSSSCEEEEEESC----
T ss_pred eeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhc-CCCCceEEecccceeEEEEEcCCCcEEEEEecC----
Confidence 688887654 688987642 23446678899999999876 322111 11112121 11111111111100
Q ss_pred HhhhcccccccccchhhhHHHhhhHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC-----CCCcHHHHHHHHHHhhcC-
Q 002406 707 VKSENGNKAKRVYSTDKILFIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFS-----ACLVEEAVELLVAYLFLK- 780 (927)
Q Consensus 707 l~~~~~~~~~~~~~~~~~~~~~p~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs-----~hi~eE~vELLva~vfl~- 780 (927)
. ....-+..|..+...+|.|-+.++++|.|+..+.+. +.++.=++.+||++...+
T Consensus 162 -----------~--------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~ 222 (353)
T 2ikf_A 162 -----------R--------NGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQR 222 (353)
T ss_dssp -----------C--------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHT
T ss_pred -----------c--------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhc
Confidence 0 012355678888999999999999999999999874 668999999999998732
Q ss_pred -CCCCCC------------------------CCchhhHHHHHHHHHh-cCCCCCCeEEEeCCCCCCHHhHHHHHHHHHHh
Q 002406 781 -PLPFNV------------------------PCSRVTGFLRFLRLLA-EYDWTFSALVVDINNDFGPEDFKVINDNFMSS 834 (927)
Q Consensus 781 -p~p~~~------------------------P~S~~~GFlRfL~lLa-~~DW~~~PLiVd~~~~lt~~~~~~i~~~F~~~ 834 (927)
..|.-| ..+...=|+.|+++-+ .|||.+.-+=|...+-++.++. .|
T Consensus 223 ~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~--------~w 294 (353)
T 2ikf_A 223 NHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEEL--------DW 294 (353)
T ss_dssp TSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHH--------TC
T ss_pred CCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCcceechhh--------cc
Confidence 112211 1233445899999999 7999866443433344443321 12
Q ss_pred hhcc----cccccCCCCeEEEEeCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 002406 835 RKAS----EENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSA 883 (927)
Q Consensus 835 R~~~----~~dp~~~~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~ 883 (927)
.+.. ..++......|+|-.|.|+.--. ++ +-+..-+.+|..-=+.|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~-~r-~v~~~~~~~i~~~f~~A~ 345 (353)
T 2ikf_A 295 TKSAEDFARMNGEKVHYQWCIEDPYELNLNV-GR-NVTPLKRDFLRRHLEKAR 345 (353)
T ss_dssp SHHHHTTCEETTEECCCSSEEBCSSSTTCBT-TT-TCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCcceEEEECCCCCCCcc-cC-CCCHHHHHHHHHHHHHHH
Confidence 1100 00111233479999999986432 22 223333455554444443
No 16
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=96.22 E-value=0.023 Score=62.93 Aligned_cols=166 Identities=13% Similarity=0.171 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhhcC-CCCCCCC-----------------
Q 002406 730 QHASMINGLQGRYPVFGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLFLK-PLPFNVP----------------- 787 (927)
Q Consensus 730 ~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vfl~-p~p~~~P----------------- 787 (927)
.-+..|..+...+|.|-+.++++|.|+..+.+. +.++.=++.|||++...+ ..|-..|
T Consensus 142 ~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~ 221 (349)
T 4fh3_A 142 HNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFD 221 (349)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEE
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcc
Confidence 456678889999999999999999999999885 469999999999987531 1111011
Q ss_pred ----------------CchhhHHHHHHHHHh-cCCCCCCeEEEeCC-CCCCHHhHHHHHHHHHHhhhcccccccCCCCeE
Q 002406 788 ----------------CSRVTGFLRFLRLLA-EYDWTFSALVVDIN-NDFGPEDFKVINDNFMSSRKASEENVQNVNPAL 849 (927)
Q Consensus 788 ----------------~S~~~GFlRfL~lLa-~~DW~~~PLiVd~~-~~lt~~~~~~i~~~F~~~R~~~~~dp~~~~p~~ 849 (927)
.|...=++.|+++-+ .|||.+..+-|... +-++.++..-. .....+... .......-.|
T Consensus 222 ~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~-~~~~~~~~~--~~~~~~~~~l 298 (349)
T 4fh3_A 222 VGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWT-SATEHTGSA--DQIIKDRYIL 298 (349)
T ss_dssp CCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------------------CCSS
T ss_pred cccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccc-ccccccCcc--cccCCCCceE
Confidence 233344788888888 59998775544332 23444432100 000000000 0001122468
Q ss_pred EEEeCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccc
Q 002406 850 FLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVT 905 (927)
Q Consensus 850 fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~~~l~~~~~~~~~~~~~~~~lF~ 905 (927)
+|-+|.|++--. ++ +=+..-+.||..-=+.|.++|.+. ....+|..||.
T Consensus 299 ~IeDPf~~~~Nv-ar-~Vs~~~~~~I~~eF~~A~~~L~~~-----~~~~~~~~lfe 347 (349)
T 4fh3_A 299 AIEDPFEISHNV-GR-TVSSSGLYRIRGEFMAASRLLNSR-----SYPIPYDSLFE 347 (349)
T ss_dssp CBBCSSSTTCBG-GG-GCCHHHHHHHHHHHHHHHHHHHCC-----SSSCCGGGGGS
T ss_pred EEECCCCCCCcC-CC-CCCHHHHHHHHHHHHHHHHHHhCc-----ccCCCHHHHhh
Confidence 999999986432 22 223556788888888888887532 23567888886
No 17
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=96.19 E-value=0.063 Score=59.20 Aligned_cols=261 Identities=19% Similarity=0.259 Sum_probs=155.0
Q ss_pred cccCCCCccchhHHHHHHHHHHHHHhcCCCCCCCCcccCCccccccCCceeEEEEeCCceeeEeeeeecccccCCCCcee
Q 002406 23 EVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVKPAVNVD 102 (927)
Q Consensus 23 ev~~~~~~~~~~~~e~~L~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k~~~~VD 102 (927)
+++|+... ...+..+..++..+|+++=.. +-. + ...+ ..|..||||+-||+.+.+..+|
T Consensus 37 ~l~Ps~eE--q~~v~~lv~kI~~~ld~liv~-pg~------~-------e~~L-----~~V~rVGs~aKgtll~G~~~~d 95 (364)
T 4at7_A 37 DLAPNSAE--QASILSLVTKINNVIDNLIVA-PGT------F-------EVQI-----EEVRQVGSYKKGTMTTGHNVAD 95 (364)
T ss_dssp HHSCCHHH--HHHHHHHHHHHHHHHHHHHHC-CTT------C-------SSCE-----EEEEEEHHHHHTCCCTTCCEEE
T ss_pred ccCCCHHH--HHHHHHHHHHHHHHHHhhhcC-CCc------c-------cccc-----ceeEEeccccCCceecCCCcee
Confidence 56776555 346777777777777664211 000 0 0111 3678899999999999999999
Q ss_pred EEE---ecCccccCcccccccchhHHHHh--HHHHHHHhhccCCCCCceEeecCCCCCcceeEEEEeCCCCCCCCCeEEE
Q 002406 103 LFV---GLPKECFHEKDYLNHRYHAKRCL--YLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFVR 177 (927)
Q Consensus 103 l~V---~mP~~~fq~KDylN~RY~~KRA~--YLa~ia~~L~~~~~~~~v~~~~~~~d~~kPil~l~p~~~~~~~~~~~iR 177 (927)
|+| +.|.. -+. .+..|+..|++......+. -.-+| . -..|... ...++|.
T Consensus 96 lVvl~k~lPT~---------------e~v~~L~~kV~e~L~~q~~~e~~~--~~~~e--~-~~~I~~~-----~~~v~i~ 150 (364)
T 4at7_A 96 LVVILKILPTL---------------EAVAALGNKVVESLRAQDPSEVLT--MLTNE--T-GFEISSS-----DATVKIL 150 (364)
T ss_dssp EEEEESSCCBH---------------HHHHHHHHHHHHHHHHHCTTSCCE--EEEET--T-EEEEECS-----SCEEEEE
T ss_pred EEEEecCCCCH---------------HHHHHHHHHHHHHhhhhcccccee--eccCc--c-eEEEecC-----CCcEEEE
Confidence 999 44532 222 4456777776542110010 00000 0 1111111 1124455
Q ss_pred EEecCCCCCcccccccccCCccCCCCCCCCCCCCCcchh-hhhccChHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcCC
Q 002406 178 IIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSS-ILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSS 256 (927)
Q Consensus 178 i~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNss-il~D~~~~~~l~~l~~~~~~~~~f~dA~~LlkvWl~QRg~ 256 (927)
|..+++ |+|-.. |+ =|-... .+.-+....|.+...+.... ...+--++++|= ++||-.
T Consensus 151 It~tsp-------------~lrk~d-----p~-~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkD-lc~R~~ 209 (364)
T 4at7_A 151 ITTVPP-------------NLRKLD-----PE-LHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKD-LRIRFP 209 (364)
T ss_dssp EEECHH-------------HHHTCC-----TT-TBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HHHHCG
T ss_pred EEeCCh-------------hhccCC-----hh-HhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHH-HHHhcC
Confidence 443333 233211 11 122222 22223456777777654443 455666777877 777742
Q ss_pred CccCCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeecCCCCCCCChhHHHhhhhcCCEEEeC
Q 002406 257 IYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPVVICD 336 (927)
Q Consensus 257 ~~~~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~f~vvf~D 336 (927)
+.+.++++.+=.|+.|-+..+.-...++.-+.||-+++.||+ |+++... .+ +.|
T Consensus 210 --~w~pL~~waLELL~~~Ai~s~~~~~~l~~~~afRRVLElLAs------Gillp~~--~G----------------i~D 263 (364)
T 4at7_A 210 --GFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA------GLFLPGS--VG----------------ITD 263 (364)
T ss_dssp --GGTTCCHHHHHHHHHHHHHSSTTSSCCCHHHHHHHHHHHHHT------TTTSTTB--CC----------------CBC
T ss_pred --CcCCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHh------CcccCCC--CC----------------CcC
Confidence 225677866667777887776666789999999999999994 5555321 11 256
Q ss_pred CC--CceeeccCCCHHHHHHHHHHHHHHHHHhhccCCCccccccc
Q 002406 337 PS--AQVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETFL 379 (927)
Q Consensus 337 ~s--g~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~~~d~F~~lFl 379 (927)
|+ |..++...||....+.+-.-|+..|+++.- +++..++-
T Consensus 264 PCE~~~~~v~~~lt~qq~e~it~sAQ~~LRllaf---gq~~kVLG 305 (364)
T 4at7_A 264 PCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSH---GGFRKILG 305 (364)
T ss_dssp TTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHHHT---TCHHHHHT
T ss_pred CCCCCCcchhccCCHHHHHHHHHHHHHHHHHHHh---cCcceecc
Confidence 64 458899999999999999999999999964 56666663
No 18
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=96.03 E-value=0.1 Score=59.16 Aligned_cols=162 Identities=13% Similarity=0.146 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhh-cCCCC-CC-------------------
Q 002406 731 HASMINGLQGRYPVFGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLF-LKPLP-FN------------------- 785 (927)
Q Consensus 731 h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vf-l~p~p-~~------------------- 785 (927)
-+..|+.+...+|.+-+.++++|.|+..+.|. +.++.-++.|||++.. -.-.| .-
T Consensus 171 ~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~ 250 (405)
T 4e8f_A 171 NTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDV 250 (405)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEEC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeee
Confidence 45567788889999999999999999999874 4799999999999987 21111 10
Q ss_pred -------------CCCchhhHHHHHHHHHh-cCCCCCCeEEEe-CCCCCCHHhHHHHHHHHHHhhhccc----cc-ccCC
Q 002406 786 -------------VPCSRVTGFLRFLRLLA-EYDWTFSALVVD-INNDFGPEDFKVINDNFMSSRKASE----EN-VQNV 845 (927)
Q Consensus 786 -------------~P~S~~~GFlRfL~lLa-~~DW~~~PLiVd-~~~~lt~~~~~~i~~~F~~~R~~~~----~d-p~~~ 845 (927)
...|...=++.|+++-+ .|||.+..+=|. ..+-++.++. .|....+ .+ +...
T Consensus 251 ~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k--------~w~~~~~~~g~~~~~~~~ 322 (405)
T 4e8f_A 251 GFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEK--------GWTSATEHTGSADQIIKD 322 (405)
T ss_dssp CCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHH--------TCCC-------------C
T ss_pred ccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccc--------cccccccccccccccccC
Confidence 11344556888999999 899998755444 3334554432 1211000 00 0012
Q ss_pred CCeEEEEeCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccccc
Q 002406 846 NPALFLATAYDKASEAWTTCSPNFTELKRLVAYARSSANLLTKLILEDQTDSCRWEGQVTLP 907 (927)
Q Consensus 846 ~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk~s~~~l~~~~~~~~~~~~~~~~lF~~p 907 (927)
...|+|-.|.|+.--. + .+=+..-+.+|..-=+.|.++|.+.. ....|..||.++
T Consensus 323 ~~~L~IeDPf~~~~Nv-~-r~vs~~~~~~I~~eF~rA~~iL~~~~-----~~~~w~~Lf~~~ 377 (405)
T 4e8f_A 323 RYILAIEDPFEISHNV-G-RTVSSSGLYRIRGEFMAASRLLNSRS-----YPIPYDSLFEEA 377 (405)
T ss_dssp CCSSEEBCSSSTTCBT-T-TTCCHHHHHHHHHHHHHHHHHHTCSS-----SSCCGGGGGSCC
T ss_pred CceEEEECCCCccccc-c-cCCCHHHHHHHHHHHHHHHHHHhhhc-----cCCCHHHHhCcC
Confidence 3479999999986432 2 23345667899988888999985431 246799999864
No 19
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.072 Score=58.62 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhhcCCCC------CCCCCchhhHHHHHHHH
Q 002406 731 HASMINGLQGRYPVFGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLFLKPLP------FNVPCSRVTGFLRFLRL 800 (927)
Q Consensus 731 h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vfl~p~p------~~~P~S~~~GFlRfL~l 800 (927)
-+..|..+...+|.|.+.++++|.|+..+.+. +.++.-++.+||++..-. .| ..+..+...=++.|+++
T Consensus 146 ~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~-~p~~~~~~~~~~~~lg~LL~~Ff~~ 224 (323)
T 3nyb_A 146 AAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHM-HPRIITNEIDPKDNLGVLLIEFFEL 224 (323)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHT-CHHHHTTCBCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHh-CCccCcccCCccccHHHHHHHHHHH
Confidence 45567788889999999999999999999874 469999999999976543 32 11223444568999999
Q ss_pred Hh-cCCCCCCeEEEeCCCC--CCHHhHHHHHHHHHHhhhcccccccCCCCeEEEEeCCCCCCCccccCCCCHHHHHHHHH
Q 002406 801 LA-EYDWTFSALVVDINND--FGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVA 877 (927)
Q Consensus 801 La-~~DW~~~PLiVd~~~~--lt~~~~~~i~~~F~~~R~~~~~dp~~~~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~ 877 (927)
-+ +|||.+..+=|...+. ++.+ .|+.. .++.+.-.|+|-.|.|++--. ++.. .-+.+|..
T Consensus 225 Y~~~Fd~~~~~Isv~~g~~~~~~k~----------~~~~~---~~~~~~~~l~IeDP~~~~~ni-gr~~---~~~~~I~~ 287 (323)
T 3nyb_A 225 YGKNFGYDDVALGSSDGYPVYFPKS----------TWSAI---QPIKNPFSLAIQDPGDESNNI-SRGS---FNIRDIKK 287 (323)
T ss_dssp HHHTCCTTTEEEEESSSCEEEEEGG----------GCGGG---CSCSCSSSCCBEETTEEEEET-TTTC---TTHHHHHH
T ss_pred hccccCCCCcEEEEecCCcceeeHH----------hcccc---cccCCCceEEEeCCCCCCccc-ccch---HHHHHHHH
Confidence 99 9999988776664431 2221 12221 111123479999999875322 2222 23677888
Q ss_pred HHHHHHHHHHHH
Q 002406 878 YARSSANLLTKL 889 (927)
Q Consensus 878 LAk~s~~~l~~~ 889 (927)
.-+.|.++|.+.
T Consensus 288 ~F~~A~~~L~~~ 299 (323)
T 3nyb_A 288 AFAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888754
No 20
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=94.59 E-value=0.19 Score=55.85 Aligned_cols=233 Identities=15% Similarity=0.184 Sum_probs=129.5
Q ss_pred eeEeeeeecccccCCCCceeEEEecCccccCcccccccchhHHHHhHHHHHHHhhc----cCCCCCceEeecCCCCCcce
Q 002406 83 FKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLK----SSPSFDKVEWSAMQNEARKP 158 (927)
Q Consensus 83 v~vvGS~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~ia~~L~----~~~~~~~v~~~~~~~d~~kP 158 (927)
|-=||+|+-|++.+.+.++||+|..-..== .-.|..|+..|. +.... .|+.. .+...-
T Consensus 94 VMRVG~laKGlLLkGd~~veLVvlck~kPT--------------~~ll~~va~~L~~qL~~~t~~---~y~v~-~~~~ea 155 (383)
T 4at7_B 94 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT--------------TALLDKVADNLAIQLTTVTED---KYEIL-QSVDDA 155 (383)
T ss_dssp EEECHHHHHTCCCTTCCEEEEEEEESSCCB--------------HHHHHHHHHHHHHHHTTTCCC---CCEEE-EEGGGT
T ss_pred eeEeceecccceECCCCceeEEEEeCCCCc--------------HHHHHHHHHHHHHHHhhccCC---ceEEe-ecCCcc
Confidence 344999999999999999999995432210 113456666663 32111 12111 112223
Q ss_pred eEEEEeCCCCCCCCCeEEEEEecCCCCCcc--cccccccCCccCCCCCCCCCCCCCcchhhhhccChHHHHHHHHHHhhC
Q 002406 159 VLVVYPAVKSVEAPGFFVRIIPTAASLFNI--AKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISR 236 (927)
Q Consensus 159 il~l~p~~~~~~~~~~~iRi~~~~~~~F~~--~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~ 236 (927)
.++|.... .+..+|||+.+.+ .+.. .++... -|+.. ..|+-..=-.-.+.-+....|.+.+.+ .
T Consensus 156 ~i~i~~~~----~p~~~v~I~lTSp-~~re~~~~~~~~-~~~~~-----~dp~d~Ld~~~cl~aLAalRhAkWFqa---r 221 (383)
T 4at7_B 156 AIVIKNTK----EPPLSLTIHLTSP-VVREEMEKVLAG-ETLSV-----NDPPDVLDRQKCLAALASLRHAKWFQA---R 221 (383)
T ss_dssp EEEEECSS----SSCCEEEEEEECH-HHHHHHHHHHTT-CCCCC-----CCCTTBCCHHHHHHHHHHHHHHHHCCC---C
T ss_pred eEEEecCC----CCCeEEEEEECCc-ccccchhhcccc-ccccc-----CChhhcCCHHHHHHHHHHhhhhHHHHH---h
Confidence 45554432 2358899988643 1110 111111 11110 112211111122222223344444332 2
Q ss_pred hHHHHHHHHHHHHH--HHhcCCCccCCCchhHHHHHHHHHHhhccccCcCCcHHHHHHHHHHHHhcCCCCCCceeecCCC
Q 002406 237 WKELGEALILLKVW--ARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKG 314 (927)
Q Consensus 237 ~~~f~dA~~LlkvW--l~QRg~~~~~~gf~gf~~s~lla~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~ 314 (927)
+..+..+++|+|+- ++||-. +.+.++++.+=.|+-|.+.... ..++.-+.||-+|+.||+ |+.+..
T Consensus 222 a~~l~s~~ilIRilkdlc~R~~--~~~pL~~waLELL~~~ai~s~~--~~l~~~~afRRVLEllas------G~lLp~-- 289 (383)
T 4at7_B 222 ANGLKSCVIVIRVLRDLCTRVP--TWGPLRGWPLELLCEKSIGTAN--RPMGAGEALRRVLECLAS------GIVMPD-- 289 (383)
T ss_dssp CTTSTTHHHHHHHHHHHHHHCG--GGGGGTTHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHT------TTTSTT--
T ss_pred cccCCCceEEeehhhHHHHhcC--CcCCCcHhHHHHHHHHHhhCCC--CCCCHHHHHHHHHHHHhc------CcccCC--
Confidence 22333344555554 566632 2245676767777778777533 579999999999999994 444421
Q ss_pred CCCCChhHHHhhhhcCCEEEeCCCC--ceeeccCCCHHHHHHHHHHHHHHHHHhhccCCCcccccc
Q 002406 315 QIGVSKEEKLQYKEAFPVVICDPSA--QVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEETF 378 (927)
Q Consensus 315 ~~~~~~~~~~~~~~~f~vvf~D~sg--~~Nl~~~~t~~s~~~L~~eA~~tl~~L~~~~~d~F~~lF 378 (927)
.|+ +.||+- -.+..+.|+....+.|-.+|+..|.++-- +++..++
T Consensus 290 ---------------~pg-I~DPcEk~pt~~~~~lt~qq~e~it~sAQ~~LR~~af---gq~~kVL 336 (383)
T 4at7_B 290 ---------------GSG-IYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAF---GQLHKVL 336 (383)
T ss_dssp ---------------SCC-CBCTTCSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHT---TCHHHHT
T ss_pred ---------------CCC-ccCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhh---CCcceec
Confidence 122 367765 67788899999999999999999999853 4455554
No 21
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=94.57 E-value=0.65 Score=52.90 Aligned_cols=221 Identities=16% Similarity=0.188 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCeeeeecccCCcccccccCCCCCCCCCccccccccccCCCCCCccCcEEEEEEeccCC
Q 002406 567 FSASLLEAFEVLSKRLHLIEDIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEGSG 646 (927)
Q Consensus 567 ~~~~v~~af~~L~k~Lr~L~~LPL~I~~V~p~sp~lRytsv~pp~p~~~~~~~~~~~~~~~~~p~~~~pi~vvlqfE~Sg 646 (927)
..+.+.++.+++...|+. +++ .+..+.++-|+|-+- .-..+||.+-|-.+
T Consensus 20 E~~~~~~~~~~I~~~L~~---~~~---~v~~~GS~AkgT~Lr-----------------------g~sDIDIfv~f~~~- 69 (437)
T 1r89_A 20 EVRKGREAEEELRRRLDE---LGV---EYVFVGSYARNTWLK-----------------------GSLEIDVFLLFPEE- 69 (437)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTC---CEEEEHHHHHTCCCT-----------------------TCCEEEEEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHHh---CCC---eEEEeccccCCCcCC-----------------------CCCCceEEEEcCCC-
Confidence 345788999999999988 232 444556666777652 11267999999433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeecCCceeeeccceeEEEEEeccchhHHHhhhcccccccccchhhhHH
Q 002406 647 NWPMDHVAIEKTKSAFLIKIGESLQNRWGMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYSTDKILF 726 (927)
Q Consensus 647 kWPddl~AIq~~K~AF~lkIae~L~~~~~~~~~v~~d~lDV~~~G~~FRl~I~~~rE~~Ll~~~~~~~~~~~~~~~~~~~ 726 (927)
.+ .+.++.. .+.+.+...+.+.. -.....++.+.++|+-+=+.-+++-+- +. ... .+..+
T Consensus 70 -~~--~e~l~~~----~l~~~~e~l~~~~~-~ya~hpyV~~~f~g~~vDVVP~y~v~~------g~-~~~--tavDr--- 129 (437)
T 1r89_A 70 -FS--KEELRER----GLEIGKAVLDSYEI-RYAEHPYVHGVVKGVEVDVVPCYKLKE------PK-NIK--SAVDR--- 129 (437)
T ss_dssp -SC--HHHHHHH----HHHHHHHHSSSEEE-EESSSEEEEEEETTEEEEEEEEECCSS------SS-CCC--SHHHH---
T ss_pred -CC--HHHHHHH----HHHHHHHHHHHhhh-hccCCceEEEEecceEEEEEEEEEccC------Cc-ccc--ccccC---
Confidence 22 3444433 23344333322211 011123566666777777777766321 11 000 01111
Q ss_pred HhhhHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC------CCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHH
Q 002406 727 IRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFSA------CLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFLRL 800 (927)
Q Consensus 727 ~~p~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs~------hi~eE~vELLva~vfl~p~p~~~P~S~~~GFlRfL~l 800 (927)
.|.|+..+.. |...+..-|||+|+|+.+....+ .+|.=++|||+++ | .||.-+|..
T Consensus 130 -tp~H~~fv~~---r~~~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~-y-------------G~f~~vl~~ 191 (437)
T 1r89_A 130 -TPFHHKWLEG---RIKGKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVF-Y-------------GSFLETVKN 191 (437)
T ss_dssp -HHHHHHHHTT---TSTTCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHH-H-------------SSHHHHHHH
T ss_pred -cHHHHHHHHh---hhhhhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHH-H-------------cCHHHHHHH
Confidence 2778877654 33338899999999999977532 3799999999999 2 389999999
Q ss_pred HhcCCCCCCeEEEeCCCCCCHHhHHHHHHHHHHhhhcccccccCCCCeEEEEeCCCCCCCccccCCCCHHHHHHHHHHHH
Q 002406 801 LAEYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDKASEAWTTCSPNFTELKRLVAYAR 880 (927)
Q Consensus 801 La~~DW~~~PLiVd~~~~lt~~~~~~i~~~F~~~R~~~~~dp~~~~p~~fIaT~~D~~g~~wT~~~Ps~~v~~Rl~~LAk 880 (927)
+++ |+. +..+|+. . ..++ .. .+++|.=|-|+.... -.++-..++..++.
T Consensus 192 ~~~--w~~-~~~Id~~----~-----------~~~~-------~~-~PlvViDPvDp~rNV-----Aa~~s~~~~~~~~~ 240 (437)
T 1r89_A 192 ARR--WTR-RTVIDVA----K-----------GEVR-------KG-EEFFVVDPVDEKRNV-----AANLSLDNLARFVH 240 (437)
T ss_dssp HTT--CCT-TEEEEGG----G-----------TEEE-------EC-SSCEEEETTEEEEET-----TTTCCHHHHHHHHH
T ss_pred HHH--hCC-CeEEecC----C-----------Cccc-------CC-CCEEEECCCCCCCch-----hhcCCHHHHHHHHH
Confidence 985 764 7788884 0 0111 01 346788888887533 22233444445555
Q ss_pred HHHHHH
Q 002406 881 SSANLL 886 (927)
Q Consensus 881 ~s~~~l 886 (927)
+|-..|
T Consensus 241 ~a~~~l 246 (437)
T 1r89_A 241 LCREFM 246 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554554
No 22
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=94.31 E-value=2 Score=47.37 Aligned_cols=222 Identities=17% Similarity=0.120 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHhccC----CCCeeeeecccCCcccccccCCCCCCCCCccccccccccCCCCCCccCcEEEEEEecc
Q 002406 569 ASLLEAFEVLSKRLHLIE----DIPLKISSVQPLDSAFRFTSVFPPEPHPLANERHTVSRLHKLTPSCIQPLEVMIQLEG 644 (927)
Q Consensus 569 ~~v~~af~~L~k~Lr~L~----~LPL~I~~V~p~sp~lRytsv~pp~p~~~~~~~~~~~~~~~~~p~~~~pi~vvlqfE~ 644 (927)
..+.+.++++++.|.++- ..--.|..|..+.+.-+.|-+- .-.-+|+++.+-
T Consensus 46 ~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~-----------------------G~~~~dlVvl~k- 101 (364)
T 4at7_A 46 ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTT-----------------------GHNVADLVVILK- 101 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCT-----------------------TCCEEEEEEEES-
T ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceec-----------------------CCCceeEEEEec-
Confidence 356666777766666541 1112445555554444444331 012468999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhcc---CCeeeecCCceeeeccceeEEEEEeccchhHHHhhhcccccccccch
Q 002406 645 SGNWPMDHVAIEKTKSAFLIKIGESLQNRW---GMTCSATEDDADIFMSGYAFRLKILHERGLSLVKSENGNKAKRVYST 721 (927)
Q Consensus 645 SgkWPddl~AIq~~K~AF~lkIae~L~~~~---~~~~~v~~d~lDV~~~G~~FRl~I~~~rE~~Ll~~~~~~~~~~~~~~ 721 (927)
..|. .++++ +..-|+.+.|.++. .+...+....++|-..+..-|+.|..-- ..+++.... ..+..
T Consensus 102 --~lPT-~e~v~----~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~~~v~i~It~ts--p~lrk~dp~---~~Ld~ 169 (364)
T 4at7_A 102 --ILPT-LEAVA----ALGNKVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVP--PNLRKLDPE---LHLDI 169 (364)
T ss_dssp --SCCB-HHHHH----HHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSSCEEEEEEEECH--HHHHTCCTT---TBCCH
T ss_pred --CCCC-HHHHH----HHHHHHHHHhhhhccccceeeccCcceEEEecCCCcEEEEEEeCC--hhhccCChh---HhcCH
Confidence 6774 55554 45668888888763 2333344445677666677777775311 122221110 11111
Q ss_pred hhhH--HHhhhHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHH
Q 002406 722 DKIL--FIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFS-ACLVEEAVELLVAYLFLKPLPFNVPCSRVTGFLRFL 798 (927)
Q Consensus 722 ~~~~--~~~p~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs-~hi~eE~vELLva~vfl~p~p~~~P~S~~~GFlRfL 798 (927)
.+-+ +-.-+|+.+-+.=+. +++.-..+||+|. +...... ..+++=++|||+-|+.-+ .|...|-++..||-|+|
T Consensus 170 ~~cl~aLaalRhAkWfq~na~-~s~v~~lIRIlkD-lc~R~~~w~pL~~waLELL~~~Ai~s-~~~~~~l~~~~afRRVL 246 (364)
T 4at7_A 170 KVLQSALAAIRHARWFEENAS-QSTVKVLIRLLKD-LRIRFPGFEPLTPWILDLLGHYAVMN-NPTRQPLALNVAYRRCL 246 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHHHCGGGTTCCHHHHHHHHHHHHHS-STTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHhhcc-ccccceeehhhHH-HHHhcCCcCCCCHHHHHHHHHHHHhc-CCCCCCcCHHHHHHHHH
Confidence 1111 112478877765332 2333368999999 4444432 578889999999999776 35667899999999999
Q ss_pred HHHhcCCCC-CCeEEEeCC--------CCCCHHhHHHHHH
Q 002406 799 RLLAEYDWT-FSALVVDIN--------NDFGPEDFKVIND 829 (927)
Q Consensus 799 ~lLa~~DW~-~~PLiVd~~--------~~lt~~~~~~i~~ 829 (927)
++||+==.- ..|=|.|+- +.||.+++..|-.
T Consensus 247 ElLAsGillp~~~Gi~DPCE~~~~~v~~~lt~qq~e~it~ 286 (364)
T 4at7_A 247 QILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCY 286 (364)
T ss_dssp HHHHTTTTSTTBCCCBCTTSSSCCBGGGGSCHHHHHHHHH
T ss_pred HHHHhCcccCCCCCCcCCCCCCCcchhccCCHHHHHHHHH
Confidence 999983222 345555554 4499988876653
No 23
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=89.82 E-value=3.1 Score=46.29 Aligned_cols=181 Identities=15% Similarity=0.108 Sum_probs=106.9
Q ss_pred cEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHhhc----cCCeeeecCCceeeecc---ceeEEEEEecc--chhH
Q 002406 635 PLEVMIQLEGSGNWPMDHVAIEKTKSAFLIKIGESLQNR----WGMTCSATEDDADIFMS---GYAFRLKILHE--RGLS 705 (927)
Q Consensus 635 pi~vvlqfE~SgkWPddl~AIq~~K~AF~lkIae~L~~~----~~~~~~v~~d~lDV~~~---G~~FRl~I~~~--rE~~ 705 (927)
-.++|+.+- .+|. .++++++ ..+|.+.|++. |.+...+....+.|-.. ...-|+.|-.+ ||..
T Consensus 111 ~veLVvlck---~kPT-~~ll~~v----a~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~re~~ 182 (383)
T 4at7_B 111 DLELVLLCK---EKPT-TALLDKV----ADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 182 (383)
T ss_dssp EEEEEEEES---SCCB-HHHHHHH----HHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHHHHHH
T ss_pred ceeEEEEeC---CCCc-HHHHHHH----HHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcccccch
Confidence 467888776 7885 4544443 33444444432 22222233334555432 25566666666 4431
Q ss_pred --HHhhhcccc----cccccchhhhH--HHhhhHHHHHHHHHhcCCChhHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHH
Q 002406 706 --LVKSENGNK----AKRVYSTDKIL--FIRGQHASMINGLQGRYPVFGPVVRVAKRWAASHLFS-ACLVEEAVELLVAY 776 (927)
Q Consensus 706 --Ll~~~~~~~----~~~~~~~~~~~--~~~p~h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs-~hi~eE~vELLva~ 776 (927)
+. .+.+. ..+.+...+-+ +-.-+|+.+-+.-++..++.-..+||+|. +...... ..++.=++|||+-|
T Consensus 183 ~~~~--~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkd-lc~R~~~~~pL~~waLELL~~~ 259 (383)
T 4at7_B 183 EKVL--AGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRD-LCTRVPTWGPLRGWPLELLCEK 259 (383)
T ss_dssp HHHH--TTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHH-HHHHCGGGGGGTTHHHHHHHHH
T ss_pred hhcc--cccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhH-HHHhcCCcCCCcHhHHHHHHHH
Confidence 11 11110 01111111111 11236776665555555667789999999 4444322 46778899999999
Q ss_pred hhcCCCCCCCCCchhhHHHHHHHHHhcCCCC-CCeEEEeCC--------CCCCHHhHHHHHH
Q 002406 777 LFLKPLPFNVPCSRVTGFLRFLRLLAEYDWT-FSALVVDIN--------NDFGPEDFKVIND 829 (927)
Q Consensus 777 vfl~p~p~~~P~S~~~GFlRfL~lLa~~DW~-~~PLiVd~~--------~~lt~~~~~~i~~ 829 (927)
+.-.+. .|-++..||-|+|.+||..-.- ..|-|.|+- +.||.++...|-.
T Consensus 260 ai~s~~---~~l~~~~afRRVLEllasG~lLp~~pgI~DPcEk~pt~~~~~lt~qq~e~it~ 318 (383)
T 4at7_B 260 SIGTAN---RPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQ 318 (383)
T ss_dssp HHHTSS---SCCCHHHHHHHHHHHHHTTTTSTTSCCCBCTTCSSCCBTTTTCCHHHHHHHHH
T ss_pred HhhCCC---CCCCHHHHHHHHHHHHhcCcccCCCCCccCCCCCCCccccccCCHHHHHHHHH
Confidence 987532 5899999999999999997664 679998864 4588887776553
No 24
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=88.98 E-value=3.7 Score=45.94 Aligned_cols=84 Identities=17% Similarity=0.400 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhhcCC-------CC---------------
Q 002406 731 HASMINGLQGRYPV-FGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLFLKP-------LP--------------- 783 (927)
Q Consensus 731 h~~~i~~l~~r~pa-f~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vfl~p-------~p--------------- 783 (927)
-+..|..+...||. +.+.+.++|.|+..+.|. +.++.=++-+||++..-.. .|
T Consensus 140 ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~ 219 (384)
T 3hj4_A 140 NSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEML 219 (384)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhh
Confidence 44567888888897 899999999999999874 4689999999998865321 00
Q ss_pred ---CC-CC-------CchhhH------HHHHHHHHhcCCCCCCeEEEe
Q 002406 784 ---FN-VP-------CSRVTG------FLRFLRLLAEYDWTFSALVVD 814 (927)
Q Consensus 784 ---~~-~P-------~S~~~G------FlRfL~lLa~~DW~~~PLiVd 814 (927)
+. +| .....| ++.|+++-+.|||...-+=|.
T Consensus 220 ~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~ 267 (384)
T 3hj4_A 220 LQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLI 267 (384)
T ss_dssp HTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSS
T ss_pred hhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEec
Confidence 01 11 111234 778999999999998855443
No 25
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=77.94 E-value=12 Score=43.12 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCC----CCCcHHHHHHHHHHhhcCC--CCC-CC---------C----
Q 002406 729 GQHASMINGLQGRYPV-FGPVVRVAKRWAASHLFS----ACLVEEAVELLVAYLFLKP--LPF-NV---------P---- 787 (927)
Q Consensus 729 p~h~~~i~~l~~r~pa-f~~tvRLaKRWl~shlLs----~hi~eE~vELLva~vfl~p--~p~-~~---------P---- 787 (927)
..-+..|+.+.+.+|. +.+.+.++|.|+..+.|. +.++.=++=|||++...+- -|. .| |
T Consensus 256 i~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~~ 335 (468)
T 2b4v_A 256 VKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPD 335 (468)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCC
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcccccC
Confidence 3556789999999999 999999999999999874 4799999999999865321 011 01 1
Q ss_pred ---------CchhhHHHHHHHHHh-cCCCCCCeEEEeCCCCCCHHhHHHHHHHHHHhhhcccccccCCCCeEEEEeCCCC
Q 002406 788 ---------CSRVTGFLRFLRLLA-EYDWTFSALVVDINNDFGPEDFKVINDNFMSSRKASEENVQNVNPALFLATAYDK 857 (927)
Q Consensus 788 ---------~S~~~GFlRfL~lLa-~~DW~~~PLiVd~~~~lt~~~~~~i~~~F~~~R~~~~~dp~~~~p~~fIaT~~D~ 857 (927)
.+...=++.|+++-+ .|||...-+=|...+.++.++. .|....+ ......-.|+|-.|.|+
T Consensus 336 ~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~--------~w~~~~n-~~~~~~~~L~IeDPfd~ 406 (468)
T 2b4v_A 336 FSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDI--------GWNFPQN-KKGTFSYNFCIEDPYED 406 (468)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHH--------TCCCGGG-EETTEECSSCBBCSSTT
T ss_pred CCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcceecccc--------ccccccc-ccCCCcceEEEECCCCC
Confidence 133445788888888 9999876433333334444321 1221000 00000125899999998
Q ss_pred ----CCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002406 858 ----ASEAWTTCSPNFTELKRLVAYARSSANLLTKL 889 (927)
Q Consensus 858 ----~g~~wT~~~Ps~~v~~Rl~~LAk~s~~~l~~~ 889 (927)
.--. ++ +=+..-+.+|..--+.|.++|++.
T Consensus 407 ~~~~~~Nv-gr-~v~~~~~~~I~~eF~~A~~~L~~~ 440 (468)
T 2b4v_A 407 VGTGGLNL-VR-HLHPAKFQLVKQEFLRAAQCMERF 440 (468)
T ss_dssp TTTTCCBT-TT-TCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCccc-CC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3221 22 223567889999999999998764
No 26
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=61.67 E-value=31 Score=39.57 Aligned_cols=101 Identities=8% Similarity=0.149 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhcCCCC----C-CcHHHHHHHHHHhhcCCC-CCCCC-----------------
Q 002406 731 HASMINGLQGRYPVFGPVVRVAKRWAASHLFSA----C-LVEEAVELLVAYLFLKPL-PFNVP----------------- 787 (927)
Q Consensus 731 h~~~i~~l~~r~paf~~tvRLaKRWl~shlLs~----h-i~eE~vELLva~vfl~p~-p~~~P----------------- 787 (927)
-+..|+.+...+|.+-+-+.++|.|+..+.|.+ . ++.=++-|||++..-.-. |.-|+
T Consensus 284 ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vd 363 (464)
T 3pq1_A 284 SSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIE 363 (464)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC------
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeec
Confidence 456788899999999999999999999998854 2 899999999988755422 11000
Q ss_pred -------------------CchhhHHHHHHHHHhcCCCCCCeEEE--eCCCCCCHHhHHHHHHHH
Q 002406 788 -------------------CSRVTGFLRFLRLLAEYDWTFSALVV--DINNDFGPEDFKVINDNF 831 (927)
Q Consensus 788 -------------------~S~~~GFlRfL~lLa~~DW~~~PLiV--d~~~~lt~~~~~~i~~~F 831 (927)
.|...=++-|+++=++|||...-+=| |.....+.++.+.+...+
T Consensus 364 g~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIsI~~Nvs~nV~~~~~~r~~~~~ 428 (464)
T 3pq1_A 364 GNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXXXXXXXXXXVSQSQLQKFVDLA 428 (464)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCCCC-------CHHHHHHHHHHH
T ss_pred cccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccccccccccccCHHHHHHHHHHH
Confidence 01111234566666899999887766 556678888776655443
No 27
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=35.83 E-value=24 Score=32.12 Aligned_cols=29 Identities=21% Similarity=-0.010 Sum_probs=24.0
Q ss_pred CceeeEeeeeecccccCCCCceeEEEecCc
Q 002406 80 PKTFKIGGSYSINCVVKPAVNVDLFVGLPK 109 (927)
Q Consensus 80 P~~v~vvGS~~l~t~~k~~~~VDl~V~mP~ 109 (927)
+..|-+.||++-|. .++...||++|..+.
T Consensus 27 v~~v~LFGS~ArG~-~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 27 DYTVWAFGSRVKGK-AKKYSDLDLAIISEE 55 (114)
T ss_dssp TSEEEEEGGGTTTC-CCTTCCEEEEEECSS
T ss_pred CCEEEEEeccCCCC-CCCCCCeEEEEEeCC
Confidence 45788999999886 566789999999875
No 28
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=29.75 E-value=27 Score=30.81 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=23.9
Q ss_pred CceeeEeeeeecccccCCC-CceeEEEecCc
Q 002406 80 PKTFKIGGSYSINCVVKPA-VNVDLFVGLPK 109 (927)
Q Consensus 80 P~~v~vvGS~~l~t~~k~~-~~VDl~V~mP~ 109 (927)
+..|-+.||++-|. .++. ..||++|..+.
T Consensus 17 ~~~v~LFGS~ArG~-~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 17 DAEIYLYGSVVEGD-YSIGLSDIDVAIVSDV 46 (96)
T ss_dssp TCEEEEESHHHHCC-SSSCCCSEEEEEECGG
T ss_pred CcEEEEEEEEEeCC-CCCCCCceEEEEEeCC
Confidence 36788999999987 4566 89999998874
No 29
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=24.41 E-value=29 Score=30.70 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.6
Q ss_pred CceeeEeeeeecccccCCCCceeEEEecCc
Q 002406 80 PKTFKIGGSYSINCVVKPAVNVDLFVGLPK 109 (927)
Q Consensus 80 P~~v~vvGS~~l~t~~k~~~~VDl~V~mP~ 109 (927)
+..+-+.||++-|. .++...||++|..+.
T Consensus 25 v~~v~LFGS~arG~-~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 25 AVRVRVFGSVARGE-AREDSDLDLLVAFEE 53 (98)
T ss_dssp CSSCEECSHHHHTC-CCTTCCCEEEECCCS
T ss_pred CcEEEEEccccCCC-CCCCCCEEEEEEeCC
Confidence 45788999999886 556789999998875
No 30
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=23.91 E-value=29 Score=31.63 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=23.1
Q ss_pred ceeeEeeeeecccccCCCCceeEEEecCc
Q 002406 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPK 109 (927)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDl~V~mP~ 109 (927)
..|-+.||++-|. .++...||++|..+.
T Consensus 34 ~~v~LFGS~ArG~-~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 34 EEVYIFGSRARGD-YLDTSDIDILFVFKG 61 (111)
T ss_dssp EEEEEESHHHHSC-CCTTCCEEEEEEESS
T ss_pred cEEEEEeeeecCC-CCCCCCEEEEEEecC
Confidence 4688999999886 556789999999874
Done!