BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002407
(927 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 168
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 169 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 220
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 221 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 280 SEDNLVYIWNLQTK 293
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 586 MDKTVRLWHLSSKTCLKIFS-HSDYVTCI--QFNPVDDRYFISGSLDAKVRIWSIPERQV 642
+D T++LW S CLK ++ H + CI F+ ++ +SGS D V IW++ +++
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 643 VDWNDLHE--MVTAACY 657
V H +++ AC+
Sbjct: 296 VQKLQGHTDVVISTACH 312
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 199
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 200 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 259 SEDNLVYIWNLQTK 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 586 MDKTVRLWHLSSKTCLKIFS-HSDYVTCI--QFNPVDDRYFISGSLDAKVRIWSIPERQV 642
+D T++LW S CLK ++ H + CI F+ ++ +SGS D V IW++ +++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 643 VDWNDLHE--MVTAACY 657
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 199
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 200 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 259 SEDNLVYIWNLQTK 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 586 MDKTVRLWHLSSKTCLKIFS-HSDYVTCI--QFNPVDDRYFISGSLDAKVRIWSIPERQV 642
+D T++LW S CLK ++ H + CI F+ ++ +SGS D V IW++ +++
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 643 VDWNDLHE--MVTAACY 657
V H +++ AC+
Sbjct: 275 VQKLQGHTDVVISTACH 291
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 166
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 167 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 218
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 219 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 278 SEDNLVYIWNLQTK 291
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 586 MDKTVRLWHLSSKTCLKIFS-HSDYVTCI--QFNPVDDRYFISGSLDAKVRIWSIPERQV 642
+D T++LW S CLK ++ H + CI F+ ++ +SGS D V IW++ +++
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 643 VDWNDLHE--MVTAACY 657
V H +++ AC+
Sbjct: 294 VQKLQGHTDVVISTACH 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 199
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 200 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 259 SEDNLVYIWNLQTK 272
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LA++ D +I +W + + EK GH L + +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 76
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 77 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 113
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 172
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 285
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLWK 312
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 202
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 203 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 262 SEDNLVYIWNLQTK 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 79
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 80 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 116
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 175
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 288
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 289 ISTACHPTENIIASAALENDKTIKLWK 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 202
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 203 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 262 SEDNLVYIWNLQTK 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 79
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 80 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 116
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 175
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 288
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 289 ISTACHPTENIIASAALENDKTIKLWK 315
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 143
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 144 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 195
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 196 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 255 SEDNLVYIWNLQTK 268
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 72
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 73 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 109
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 168
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 169 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 281
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 282 ISTACHPTENIIASAALENDKTIKLWK 308
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 149
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 150 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 201
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 202 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 261 SEDNLVYIWNLQTK 274
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 78
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 79 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 115
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 174
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 175 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 287
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 288 ISTACHPTENIIASAALENDKTIKLWK 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 150
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 202
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 203 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 262 SEDNLVYIWNLQTK 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 79
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 80 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 116
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 175
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 288
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 289 ISTACHPTENIIASAALENDKTIKLWK 315
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 161
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 162 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 213
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 214 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 273 SEDNLVYIWNLQTK 286
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 90
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 91 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 127
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 186
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 187 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 299
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 300 ISTACHPTENIIASAALENDKTIKLWK 326
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 145
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 146 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 197
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 198 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 257 SEDNLVYIWNLQTK 270
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 74
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 75 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 111
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 170
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 171 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 283
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 284 ISTACHPTENIIASAALENDKTIKLWK 310
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 140
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 141 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 192
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 193 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 252 SEDNLVYIWNLQTK 265
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 69
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 70 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 106
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 165
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 278
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 279 ISTACHPTENIIASAALENDKTIKLWK 305
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 144
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 196
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 197 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 256 SEDNLVYIWNLQTK 269
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 73
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 74 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 110
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 169
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 282
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 283 ISTACHPTENIIASAALENDKTIKLWK 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + + +
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKT 144
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 196
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 197 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 256 SEDNLVYIWNLQTK 269
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-LNMLLLAN 510
+ H ++ S+KFS +G +LAS+ D +I +W + + EK GH L + +A
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAW 73
Query: 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570
S N L +++ +S S K + + +GH + V
Sbjct: 74 SSDS----------NLLVSASDDKTLKIWDVS-------------SGKCLKTLKGHSNYV 110
Query: 571 LDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSL 628
D++VR+W + + CLK +HSD V+ + FN D +S S
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 169
Query: 629 DAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
D RIW Q + +D + V+ ++P+G+ L + + L++ S+ K +
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746
+ K +TG ++ S + LV + + + ++V K +G +T+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-----EIVQKLQG--HTDVV 282
Query: 747 ISASLTANGRYVVSAS--EDSYVYVWK 771
IS + + SA+ D + +WK
Sbjct: 283 ISTACHPTENIIASAALENDKTIKLWK 309
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKT 147
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 199
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 200 FVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 259 SEDNMVYIWNLQTK 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 32/235 (13%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ I H I + +S D L SA +D + +W V G+ L K GH N +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCL-KTLKGHSNYVFCC 116
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS------- 562
N +P+ + D + + K+L V F I S
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 563 ----------FQGHLDD-----VLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFS-H 606
+ +DD +D T++LW S CLK ++ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 607 SDYVTCI--QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTAACY 657
+ CI F+ ++ +SGS D V IW++ +++V H +++ AC+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT+++W +SS CLK HS+YV C FNP +SGS D VRIW + +
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKT 147
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
H + V+A + DG + SY G C +++T+ + K+ I+ N ++
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPP-------VS 199
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG-RYVVSA 761
+F+P + +L + D+ +++ D + + G +N I A+ + G +++VS
Sbjct: 200 FVKFSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 762 SEDSYVYVWKYEAE 775
SED+ VY+W + +
Sbjct: 259 SEDNMVYIWNLQTK 272
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 32/235 (13%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ I H I + +S D L SA +D + +W V G+ L K GH N +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV----SSGKCL-KTLKGHSNYVFCC 116
Query: 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS------- 562
N +P+ + D + + K+L V F I S
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 563 ----------FQGHLDD-----VLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFS-H 606
+ +DD +D ++LW S CLK ++ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 607 SDYVTCI--QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTAACY 657
+ CI F+ ++ +SGS D V IW++ +++V H +++ AC+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACH 291
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 43/328 (13%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
Q + H+ S+W + FS DG+ +ASA +D + +W R G+LL+ GH + +
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVWG 185
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568
SP+ +++ D ++ R + ++L+ V F+ + I S
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIAS------ 238
Query: 569 DVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628
DKTV+LW+ + + + HS V + F P D + S S
Sbjct: 239 ---------------ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASD 282
Query: 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688
D V++W+ + + V ++PDGQ S + L+N + LQ +
Sbjct: 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT- 341
Query: 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGFRNTNSQI 747
H + G F+P + S D +++ + L+ G +++S
Sbjct: 342 ---------GHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVR 389
Query: 748 SASLTANGRYVVSASEDSYVYVWKYEAE 775
+ + +G+ + SAS+D V +W +
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQ 417
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 43/328 (13%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
Q + H+ S+W + FS DG+ +ASA +D + +W R G+LL+ GH + +
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVRG 103
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568
SP+ +++ D ++ R + ++L+ V F+ + I S
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIAS------ 156
Query: 569 DVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628
DKTV+LW+ + + + HS V + F+P D + S S
Sbjct: 157 ---------------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 200
Query: 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688
D V++W+ + + V ++PDGQ S + L+N + LQ +
Sbjct: 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT- 259
Query: 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGFRNTNSQI 747
H + G F P + S D +++ + L+ G +++S
Sbjct: 260 ---------GHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVW 307
Query: 748 SASLTANGRYVVSASEDSYVYVWKYEAE 775
+ + +G+ + SAS+D V +W +
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWNRNGQ 335
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 133/323 (41%), Gaps = 43/323 (13%)
Query: 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508
Q + H+ S+W + FS DG+ +ASA +D + +W R G+ L+ GH + +
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQHLQTLT-GHSSSVWG 349
Query: 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568
SP+ +++ D ++ R + ++L+ V F+ + I S
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIAS------ 402
Query: 569 DVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628
DKTV+LW+ + + + HS V + F+P DD+ S S
Sbjct: 403 ---------------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASD 446
Query: 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688
D V++W+ + + V ++PDGQ S + L+N + LQ +
Sbjct: 447 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT- 505
Query: 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGFRNTNSQI 747
H + G F+P + + S D +++ + L+ G +++S
Sbjct: 506 ---------GHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQTLTG--HSSSVW 553
Query: 748 SASLTANGRYVVSASEDSYVYVW 770
+ + +G+ + SAS D V +W
Sbjct: 554 GVAFSPDGQTIASASSDKTVKLW 576
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 133/325 (40%), Gaps = 43/325 (13%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511
++AH+ S+ + FS DG+ +ASA +D + +W R G+LL+ GH + +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT-GHSSSVWGVAF 65
Query: 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571
SP+ +++ D ++ R + ++L+ V F+ + I S
Sbjct: 66 SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIAS--------- 115
Query: 572 DXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK 631
DKTV+LW+ + + + HS V + F+P D + S S D
Sbjct: 116 ------------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKT 162
Query: 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691
V++W+ + + V ++PDGQ S + L+N + LQ +
Sbjct: 163 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---- 218
Query: 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGFRNTNSQISAS 750
H + G F+P + S D +++ + L+ G +++S +
Sbjct: 219 ------GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVNGVA 269
Query: 751 LTANGRYVVSASEDSYVYVWKYEAE 775
+G+ + SAS+D V +W +
Sbjct: 270 FRPDGQTIASASDDKTVKLWNRNGQ 294
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 110/252 (43%), Gaps = 35/252 (13%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514
H + +KFS DG YLA+ G + V++V + G L+ + D AN PE
Sbjct: 63 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSD----GSLVARLSDDSA-----ANKDPE 112
Query: 515 P--TSLSPKHLDNHLEKKRRGRSINRKSLSL---DHMVVPETVFALSDKPICS-FQGHLD 568
TS SP + L + S + K L+ D ++ ++ + ++ I QGH
Sbjct: 113 NLNTSSSPS---SDLYIRSVCFSPDGKFLATGAEDRLI---RIWDIENRKIVMILQGHEQ 166
Query: 569 DV--LDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626
D+ LD D+TVR+W L + C S D VT + +P D +Y +G
Sbjct: 167 DIYSLDYFPSGDKLVSGSG-DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 225
Query: 627 SLDAKVRIWSIPERQVVDWNDLH--------EMVTAACYTPDGQGALVGSYKGSCHLYN- 677
SLD VR+W +V+ D + V + +T DGQ + GS S L+N
Sbjct: 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Query: 678 -TSENKLQQKSP 688
+ NK K+P
Sbjct: 286 QNANNKSDSKTP 297
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVG 667
Y+ + F+P D ++ +G+ D +RIW I R++V HE + + Y P G + G
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727
S + +++ + I + +T +PG + S D +RV
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSI----------EDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 728 VDGID--LVHKF-----KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780
D LV + G + +S S T +G+ VVS S D V +W + + S
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 781 SKS 783
SK+
Sbjct: 294 SKT 296
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 97/260 (37%), Gaps = 52/260 (20%)
Query: 543 LDHMVVPETVFALSDKPICSFQGHLD-----DVLDXXXXXXXXXXXXXMDKTV------R 591
+DH +VP A KPI F LD D L + + +
Sbjct: 1 MDHYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKS 60
Query: 592 LWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSLDAKVRIWSIPERQVVDWN---- 646
L H S C+K + +Y+ N Y +S GSL A++ S + + N
Sbjct: 61 LDHTSVVCCVKFSNDGEYL-ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 647 ---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703
DL+ + + C++PDG+ G+ +++ K+ + LQ H++ I
Sbjct: 120 PSSDLY--IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV----MILQ-----GHEQDI 168
Query: 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASL----------TA 753
+ P S +++ S D +R+ D R ++ S+
Sbjct: 169 YSLDYFP-SGDKLVSGSGDRTVRIWD----------LRTGQCSLTLSIEDGVTTVAVSPG 217
Query: 754 NGRYVVSASEDSYVYVWKYE 773
+G+Y+ + S D V VW E
Sbjct: 218 DGKYIAAGSLDRAVRVWDSE 237
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/347 (19%), Positives = 143/347 (41%), Gaps = 35/347 (10%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503
T L C+ +Q H+G ++S+ ++ + ++ SA +D + VW + S++ + H
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-----KLHC 108
Query: 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK-SLSLDHMVVPETVFALSDKPICS 562
++ +P S++ LD+ +R ++ + ++ +A S + +
Sbjct: 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 563 FQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFN 616
+ L D+T LW +++ + IF H+ V + N
Sbjct: 169 QETRL--------------ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 617 PVDDRYFISGSLDAKVRIWS--IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCH 674
++ FISGS D VR+W I R V ++ + + + PDGQ GS G+C
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274
Query: 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--D 732
L++ Q N + + + +T F+ S + ++ V D + +
Sbjct: 275 LFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAE 331
Query: 733 LVHKFKGFRNTN-SQISA-SLTANGRYVVSASEDSYVYVWKYEAESR 777
+V +N++ +IS L+++G + + S D + +W + +
Sbjct: 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYT 658
C + HS V + + P + + +S S D ++ +W+ Q LH V +
Sbjct: 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 659 PDGQGALVGSYKGSCHLYN-TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717
P+GQ G +C ++N +S+ P+ ++ H+ + Q+ P + ++
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPV---SRVLTGHKGYASSCQYVPDQETRLI 174
Query: 718 VTSADSRIRVVDGIDLVHKFKGF------RNTNSQISASLTA-NGRYVVSASEDSYVYVW 770
S D + D + + F +T +S S+ + N +S S D+ V +W
Sbjct: 175 TGSGDQTCVLWD-VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 771 KYEAESRPSRS 781
SR R+
Sbjct: 234 DLRITSRAVRT 244
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 30/223 (13%)
Query: 563 FQGHLDDVLDXXXX-XXXXXXXXXMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNP- 617
F GH DVL D +R+W++ + C+ S H+D+V+C++F+P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPS 163
Query: 618 VDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676
+D +SG D V++W + R V D VT+ +PDG G L+
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 677 NTSE----NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732
+ ++ +++ +PIN F+P T RI ++ D
Sbjct: 224 DLTKGEALSEMAAGAPINQ--------------ICFSPNRYWMCAATEKGIRIFDLENKD 269
Query: 733 LVHKFKGFRNTNSQI-----SASLTANGRYVVSASEDSYVYVW 770
++ + + +I S + +A+G + S D+ + VW
Sbjct: 270 IIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 34/201 (16%)
Query: 448 KCQ-EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG-HLNM 505
+CQ + H + S+ FS D R + S G D + VW V KGE + G H +
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-----KGECMHTLSRGAHTDW 154
Query: 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLD---HMVVPETVFALSDKPICS 562
+ SP +P + + + + L D H +V D +C+
Sbjct: 155 VSCVRFSPSLD--APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
Query: 563 FQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRY 622
D RLW L+ L + + I F+P +RY
Sbjct: 213 --------------------SSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP--NRY 250
Query: 623 FISGSLDAKVRIWSIPERQVV 643
++ + + +RI+ + + ++
Sbjct: 251 WMCAATEKGIRIFDLENKDII 271
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 587 DKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
D+T+++W+ + C+ ++ H+ V C+ + ++ +SGS DA +R+W I Q +
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCL-- 232
Query: 646 NDLHEMVTAA-CYTPDGQGALVGSYKGSCHLYN-TSENKLQQKSPINLQNKKKRSHQRKI 703
+ L V A C DG+ + G+Y +++ +E L LQ R + +
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH-----TLQGHTNRVYSLQF 287
Query: 704 TGFQFAPGSSSEVLVTSADSRIRV--VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761
G G S D+ IRV V+ + +H G ++ +++ + +VS
Sbjct: 288 DGIHVVSG--------SLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSG 335
Query: 762 SEDSYVYVW 770
+ DS V +W
Sbjct: 336 NADSTVKIW 344
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 30/192 (15%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
D T+R+W + + CL + H V C+Q+ D R +SG+ D V++W PE +
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWD-PETETC-- 271
Query: 646 NDLHEMV--TAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701
LH + T Y+ DG + GS S +++ HQ
Sbjct: 272 --LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---------GHQS 320
Query: 702 KITGFQFAPGSSSEVLVT-SADSRIRVVDGIDLVHKFKGFRNTNSQISA--SLTANGRYV 758
+G + +LV+ +ADS +++ D I + + N SA L N +V
Sbjct: 321 LTSGMEL----KDNILVSGNADSTVKIWD-IKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375
Query: 759 VSASEDSYVYVW 770
+++S+D V +W
Sbjct: 376 ITSSDDGTVKLW 387
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
D V++W ++TCL H++ V +QF+ + + +SGSLD +R+W + +
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNCIHT 314
Query: 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705
H+ +T+ D + G+ + +++ + Q LQ K HQ +T
Sbjct: 315 LTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQ----TLQGPNK--HQSAVTC 367
Query: 706 FQFAPGSSSEVLVTSADSRIRVVD 729
QF + + V+ +S D +++ D
Sbjct: 368 LQF---NKNFVITSSDDGTVKLWD 388
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 50/332 (15%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H I+++ + D R L SA +D + +W + + + + + ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-----SWVMTC 103
Query: 510 NGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
+P ++ LDN + K R G + L+ H L D I + G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSG 162
Query: 566 HLDDVLDXXXXXXXXXXXXXMDKTVRLWHL-SSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
D T LW + + + H+ V + P D R F+
Sbjct: 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683
SG+ DA ++W + E HE + A C+ P+G GS +C L++ +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-- 258
Query: 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA--DSRIRVVDGI--DLVHKFKG 739
Q SH I G S S L+ + D V D + D G
Sbjct: 259 --------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
N S + +T +G V + S DS++ +W
Sbjct: 311 HDNRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 50/332 (15%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H I+++ + D R L SA +D + +W + + + + + ++
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-----SWVMTC 114
Query: 510 NGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
+P ++ LDN + K R G + L+ H L D I + G
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSG 173
Query: 566 HLDDVLDXXXXXXXXXXXXXMDKTVRLWHL-SSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
D T LW + + + H+ V + P D R F+
Sbjct: 174 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 211
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683
SG+ DA ++W + E HE + A C+ P+G GS +C L++ +
Sbjct: 212 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-- 269
Query: 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA--DSRIRVVDGI--DLVHKFKG 739
Q SH I G S S L+ + D V D + D G
Sbjct: 270 --------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 321
Query: 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
N S + +T +G V + S DS++ +W
Sbjct: 322 HDNRVSCL--GVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 50/332 (15%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H I+++ + D R L SA +D + +W + + + + + ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS-----SWVMTC 103
Query: 510 NGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
+P ++ LDN + K R G + L+ H L D I + G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSG 162
Query: 566 HLDDVLDXXXXXXXXXXXXXMDKTVRLWHL-SSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
D T LW + + + H+ V + P D R F+
Sbjct: 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683
SG+ DA ++W + E HE + A C+ P+G GS +C L++ +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-- 258
Query: 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA--DSRIRVVDGI--DLVHKFKG 739
Q SH I G S S L+ + D V D + D G
Sbjct: 259 --------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
N S + +T +G V + S DS++ +W
Sbjct: 311 HDNRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 50/332 (15%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H I+++ + D R L SA +D + +W + + + + + ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS-----SWVMTC 103
Query: 510 NGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
+P ++ LDN + K R G + L+ H L D I + G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSG 162
Query: 566 HLDDVLDXXXXXXXXXXXXXMDKTVRLWHL-SSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
D T LW + + + H+ V + P D R F+
Sbjct: 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683
SG+ DA ++W + E HE + A C+ P+G GS +C L++ +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-- 258
Query: 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA--DSRIRVVDGI--DLVHKFKG 739
Q SH I G S S L+ + D V D + D G
Sbjct: 259 --------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
N S + +T +G V + S DS++ +W
Sbjct: 311 HDNRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 50/332 (15%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509
+ ++ H I+++ + D R L SA +D + +W + + + + + ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS-----SWVMTC 103
Query: 510 NGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
+P ++ LDN + K R G + L+ H L D I + G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSG 162
Query: 566 HLDDVLDXXXXXXXXXXXXXMDKTVRLWHL-SSKTCLKIFSHSDYVTCIQFNPVDDRYFI 624
D T LW + + + H+ V + P D R F+
Sbjct: 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFV 200
Query: 625 SGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683
SG+ DA ++W + E HE + A C+ P+G GS +C L++ +
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-- 258
Query: 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA--DSRIRVVDGI--DLVHKFKG 739
Q SH I G S S L+ + D V D + D G
Sbjct: 259 --------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771
N S + +T +G V + S DS++ +W
Sbjct: 311 HDNRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 35/240 (14%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511
++ H + + + D R + S+ +D + VW + + E ++
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAY 114
Query: 512 SPEPTSLSPKHLDNHLE------KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565
+P +++ LDN K + +KS+++ + F SD I + G
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 566 HLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDD-RYF 623
D T LW + S L+ F H V C+ P + F
Sbjct: 175 ---------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213
Query: 624 ISGSLDAKVRIWSIPERQVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENK 682
+SG D K +W + Q V + HE V + Y P G GS +C LY+ ++
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP 520
S+ FSL GR L + D I+VW V++ R L GH N + SP+ T+
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-----GHENRVSTLRVSPDGTAFCS 343
Query: 521 KHLDNHL 527
D+ L
Sbjct: 344 GSWDHTL 350
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 587 DKTVRLWHLSSKTCLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
D T+ +W + + + I F H + V+ ++ +P D F SGS D +R+W+
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D TV+LW+ + L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
G + R+R + + + K + +AH I SI Y+ S +D + +W
Sbjct: 73 GSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--- 124
Query: 487 ESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSL-- 543
+ LE+ +GH + ++ +P +P++ + LD ++ G+S +L+
Sbjct: 125 -NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 544 DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKI 603
+ V + L DKP D T+++W +K+C+
Sbjct: 184 ERGVNYVDYYPLPDKPYM--------------------ITASDDLTIKIWDYQTKSCVAT 223
Query: 604 F-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
H V+ F+P ISGS D ++IW+
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 586 MDKTVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQV 642
+D+TV++W L T + V + + P+ D+ Y I+ S D ++IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 643 VDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692
V + H V+ A + P + GS G+ ++N+S K+++ + L+
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D TV+LW+ + L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
G + R+R + + + K + +AH I SI Y+ S +D + +W
Sbjct: 73 GSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--- 124
Query: 487 ESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSL-- 543
+ LE+ +GH + ++ +P +P++ + LD ++ G+S +L+
Sbjct: 125 -NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 544 DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKI 603
+ V + L DKP D T+++W +K+C+
Sbjct: 184 ERGVNYVDYYPLPDKPYM--------------------ITASDDLTIKIWDYQTKSCVAT 223
Query: 604 F-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
H V+ F+P ISGS D ++IW+
Sbjct: 224 LEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 586 MDKTVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQV 642
+D+TV++W L T + V + + P+ D+ Y I+ S D ++IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 643 VDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692
V + H V+ A + P + GS G+ ++N+S K+++ + L+
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI--PERQV- 642
D +V++W LS K LK + +HS V C+ P D F+S D ++ +W P+
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 643 VDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701
+D+ + T+ + P+ G G+ L N Q S ++ QN
Sbjct: 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN-------- 271
Query: 702 KITGFQFAPGSSSEVLVTSADSRIRVVDG 730
ITG ++ SS + S D + V+D
Sbjct: 272 -ITGLAYSYHSSPFLASISEDCTVAVLDA 299
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D T+RLW + CL++ H + V CI+F D++ +SG+ D K+++W +
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 363
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 18/190 (9%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
D T+++W ++ C +I + H+ V C+Q+ D+R I+GS D+ VR+W + +++
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEML-- 206
Query: 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR-SHQRKIT 704
N L A + G +V K + S SP ++ ++ H+ +
Sbjct: 207 NTLIHHCEAVLHLRFNNGMMVTCSK------DRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764
F ++ S D I+V + +F N + + A L R VVS S D
Sbjct: 261 VVDF---DDKYIVSASGDRTIKVWNTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSD 315
Query: 765 SYVYVWKYEA 774
+ + +W E
Sbjct: 316 NTIRLWDIEC 325
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D TV+LW+ + L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
G + R+R + + + K + +AH I SI Y+ S +D + +W
Sbjct: 73 GSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--- 124
Query: 487 ESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSL-- 543
+ LE+ +GH + ++ +P +P++ + LD ++ G+S +L+
Sbjct: 125 -NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 544 DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKI 603
+ V + L DKP D T+++W +K+C+
Sbjct: 184 ERGVNYVDYYPLPDKPYM--------------------ITASDDLTIKIWDYQTKSCVAT 223
Query: 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
H V+ F+P ISGS D ++IW+
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 586 MDKTVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQV 642
+D+TV++W L T + V + + P+ D+ Y I+ S D ++IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 643 VDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692
V + H V+ A + P + GS G+ ++N+S K+++ + L+
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D TV+LW+ + L+ H +V C+ FNP D F SG LD V++WS+
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
G + R+R + + + K + +AH I SI Y+ S +D + +W
Sbjct: 73 GSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW--- 124
Query: 487 ESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSL-- 543
+ LE+ +GH + ++ +P +P++ + LD ++ G+S +L+
Sbjct: 125 -NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 544 DHMVVPETVFALSDKPICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKI 603
+ V + L DKP D T+++W +K+C+
Sbjct: 184 ERGVNYVDYYPLPDKPYM--------------------ITASDDLTIKIWDYQTKSCVAT 223
Query: 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636
H V+ F+P ISGS D ++IW+
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWN 256
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 586 MDKTVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQV 642
+D+TV++W L T + V + + P+ D+ Y I+ S D ++IW +
Sbjct: 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 643 VDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692
V + H V+ A + P + GS G+ ++N+S K+++ + L+
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 87/225 (38%), Gaps = 31/225 (13%)
Query: 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501
DL A + H + S+ FSLD R + SA D I +W + E K + E E G
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGE-G 515
Query: 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR---KSLSLDHMVVPETVFALSDK 558
H + + S P +L P + +K + +++ +S H TV D
Sbjct: 516 HRDWVSCVRFS--PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 559 PICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV 618
+C+ G D V LW L+ L + + + F+P
Sbjct: 574 SLCASGGK--------------------DGVVLLWDLAEGKKLYSLEANSVIHALCFSP- 612
Query: 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663
+RY++ + + ++IW + + +V+ DL + A D G
Sbjct: 613 -NRYWLCAATEHGIKIWDLESKSIVE--DLKVDLKAEAEKADNSG 654
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 22/198 (11%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP---ERQV 642
D +RLW L++ + F H+ V + F+ +D+R +S S D +++W+ + +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTI 509
Query: 643 VDWNDLH-EMVTAACYTPDG-QGALV-GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699
+ + H + V+ ++P+ Q +V S+ + ++N L N K RS
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN-------------LSNCKLRST 556
Query: 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFR-NTNSQISASLTANGRYV 758
TG+ S + + ++ + VV DL K + NS I A + RY
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYW 616
Query: 759 VSASEDSYVYVWKYEAES 776
+ A+ + + +W E++S
Sbjct: 617 LCAATEHGIKIWDLESKS 634
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 605 SHSDYVTCIQFNPVDDR-YFISGSLDAKVRIW---------SIPERQVVDWNDLHEMVTA 654
+H+D VT I P+D+ +S S D + +W + +R++ + E V
Sbjct: 380 AHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV-- 436
Query: 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714
+ DGQ AL GS+ G L++ + + ++ H + + F+ +
Sbjct: 437 -VLSSDGQFALSGSWDGELRLWDLAA---------GVSTRRFVGHTKDVLSVAFSL-DNR 485
Query: 715 EVLVTSADSRIRVVDGI-----DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769
+++ S D I++ + + + +G R+ S + S +VSAS D V V
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 770 W 770
W
Sbjct: 546 W 546
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 563 FQGHLDDVLDXXXXXXXXXXXX-XMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--- 618
F GH DV+ DKT+++W + + + H+D+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 619 --DDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
D IS D V+ W++ + Q+ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-------GSSSEVLVTSADSRIRVV 728
+N + K S Q ++ F+P +++ + V S D + +V
Sbjct: 223 WNLAAKKAMY----------TLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLV 271
Query: 729 DGIDLVHKFKGFRNTNS--QISASLTANGRYVVSASEDSYVYVWK 771
D DL +F G+ +S + +A+G+ + + D+ + VW+
Sbjct: 272 D--DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 563 FQGHLDDVLDXXXXXXXXXXXX-XMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--- 618
F GH DV+ DKT+++W + + + H+D+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 619 --DDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
D IS D V+ W++ + Q+ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-------GSSSEVLVTSADSRIRVV 728
+N + K S Q ++ F+P +++ + V S D + +V
Sbjct: 223 WNLAAKKAMY----------TLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLV 271
Query: 729 DGIDLVHKFKGFRNTNS--QISASLTANGRYVVSASEDSYVYVWK 771
D DL +F G+ +S + +A+G+ + + D+ + VW+
Sbjct: 272 D--DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 563 FQGHLDDVLDXXXXXXXXXXXX-XMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--- 618
F GH DV+ DKT+++W + + + H+D+V+ ++ P
Sbjct: 97 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 619 --DDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
D IS D V+ W++ + Q+ D+ + + +PDG G L
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-------GSSSEVLVTSADSRIRVV 728
+N + K S Q ++ F+P +++ + V S D + +V
Sbjct: 217 WNLAAKKAMY----------TLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLV 265
Query: 729 DGIDLVHKFKGFRNTNS--QISASLTANGRYVVSASEDSYVYVWK 771
D DL +F G+ +S + +A+G+ + + D+ + VW+
Sbjct: 266 D--DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 249 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 297
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 563 FQGHLDDVLDXXXXXXXXXXXX-XMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--- 618
F GH DV+ DKT+++W + + + H+D+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 619 --DDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
D IS D V+ W++ + Q+ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-------GSSSEVLVTSADSRIRVV 728
+N + K S Q ++ F+P +++ + V S D + +V
Sbjct: 223 WNLAAKKAMY----------TLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLV 271
Query: 729 DGIDLVHKFKGFRNTNS--QISASLTANGRYVVSASEDSYVYVWK 771
D DL +F G+ +S + +A+G+ + + D+ + VW+
Sbjct: 272 D--DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 563 FQGHLDDVLDXXXXXXXXXXXX-XMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--- 618
F GH DV+ DKT+++W + + + H+D+V+ ++ P
Sbjct: 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 619 --DDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675
D IS D V+ W++ + Q+ D+ + + +PDG G L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-------GSSSEVLVTSADSRIRVV 728
+N + K S Q ++ F+P +++ + V S D + +V
Sbjct: 223 WNLAAKKAMY----------TLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLV 271
Query: 729 DGIDLVHKFKGFRNTNS--QISASLTANGRYVVSASEDSYVYVWK 771
D DL +F G+ +S + +A+G+ + + D+ + VW+
Sbjct: 272 D--DLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRGRSINRK--SLSLDHMVVPETVFA 554
+ + SL P++L + L + G S + ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFA 303
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV-----DDRYFISGSLDAKVRIWSIPERQ 641
DKT+++W + + + H+D+V+ ++ P D IS D V+ W++ + Q
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 642 V-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700
+ D+ + + +PDG G L+N + K S Q
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXY----------TLSAQ 237
Query: 701 RKITGFQFAP-------GSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNS--QISASL 751
++ F+P +++ + V S D + +VD DL +F G+ +S +
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLVD--DLRPEFAGYSKAAEPHAVSLAW 294
Query: 752 TANGRYVVSASEDSYVYVWK 771
+A+G+ + + D+ + VW+
Sbjct: 295 SADGQTLFAGYTDNVIRVWQ 314
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 559 PICSFQGHLDDVLD-XXXXXXXXXXXXXMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFN 616
P+ SF+GH V D DKT+RLW +++ +T + H V + +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 617 PVDDRYFISGSLDAKVRIWSI 637
ISGS D +++W+I
Sbjct: 117 K-KASXIISGSRDKTIKVWTI 136
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL----NMLLLAN 510
HN +I ++ S DG +ASAG+D I +W + + L + E L N LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 511 GSP---EPTSLSPKHLDNHLEKKRRG--RSINRKSLSLDHMVVPETVFA 554
+ + SL P++L + L + G ++ ++SL +T+FA
Sbjct: 255 ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 22/227 (9%)
Query: 563 FQGHLDDVLDXXXXX-XXXXXXXXMDKTVRLWHL--SSKTCLKIFSHSDYVTCIQFNP-V 618
F GH DVL DKT++LW+ K ++ SHS++V+C++F+P
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHE-MVTAACYTPDGQGALVGSYKGSCHLYN 677
+ +S D V++W++ ++ + H + +PDG G G L++
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Query: 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737
+E K + I F+P T +I ++G +V +
Sbjct: 221 LNEGK----------HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
Query: 738 KG-FRNTNSQ------ISASLTANGRYVVSASEDSYVYVWKYEAESR 777
K +T+S+ S + +A+G+ + + D+ V VW+ +R
Sbjct: 271 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 587 DKTVRLWHLSSKTC------LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640
DKT+ +W L+ + HS +V+ + + D ++ +SGS D +R+W +
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG 95
Query: 641 QVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699
H V + ++ D + + GS + L+NT + + SH
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--------VCKYTVQDESH 147
Query: 700 QRKITGFQFAPGSSSEVLVTSA-DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYV 758
++ +F+P SS+ ++V+ D ++V + + K +T + +++ +G
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 207
Query: 759 VSASEDSYVYVW 770
S +D +W
Sbjct: 208 ASGGKDGQAMLW 219
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 26/124 (20%)
Query: 590 VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW-------------S 636
V L ++ K + H VT + NP D + + S+D V+IW S
Sbjct: 233 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696
+P R V+ AAC++PDG L K +Y+ S Q P+ L
Sbjct: 293 LPHRHPVN---------AACFSPDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPH 339
Query: 697 RSHQ 700
R Q
Sbjct: 340 RHFQ 343
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 22/227 (9%)
Query: 563 FQGHLDDVLDXXXXX-XXXXXXXXMDKTVRLWHL--SSKTCLKIFSHSDYVTCIQFNP-V 618
F GH DVL DKT++LW+ K ++ SHS++V+C++F+P
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHE-MVTAACYTPDGQGALVGSYKGSCHLYN 677
+ +S D V++W++ ++ + H + +PDG G G L++
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Query: 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737
+E K + I F+P T +I ++G +V +
Sbjct: 244 LNEGK----------HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Query: 738 KG-FRNTNSQ------ISASLTANGRYVVSASEDSYVYVWKYEAESR 777
K +T+S+ S + +A+G+ + + D+ V VW+ +R
Sbjct: 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 587 DKTVRLWHLSSKTC------LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640
DKT+ +W L+ + HS +V+ + + D ++ +SGS D +R+W +
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG 118
Query: 641 QVVDWNDLHEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699
H V + ++ D + + GS + L+NT + + SH
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT--------LGVCKYTVQDESH 170
Query: 700 QRKITGFQFAPGSSSEVLVTSA-DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYV 758
++ +F+P SS+ ++V+ D ++V + + K +T + +++ +G
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 230
Query: 759 VSASEDSYVYVW 770
S +D +W
Sbjct: 231 ASGGKDGQAMLW 242
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 590 VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL- 648
V L ++ K + H VT + NP D + + S+D V+IW + RQV
Sbjct: 234 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL--RQVRGKASFL 291
Query: 649 -----HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700
V AAC++PDG L K +Y+ S Q P+ L R Q
Sbjct: 292 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPHRHFQ 344
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 26/124 (20%)
Query: 590 VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW-------------S 636
V L ++ K + H VT + NP D + + S+D V+IW S
Sbjct: 233 VILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696
+P R V+ AAC++PDG L K +Y+ S Q P+ L
Sbjct: 293 LPHRHPVN---------AACFSPDGARLLTTDQKSEIRVYSAS----QWDCPLGLIPHPH 339
Query: 697 RSHQ 700
R Q
Sbjct: 340 RHFQ 343
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 10/191 (5%)
Query: 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML 506
Y + H + ++ + DG +AS D + VW V E K EL E H +++
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-----HRHVV 279
Query: 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566
+ +PE + S KK S S D + V + + + GH
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--TGMCLMTLVGH 337
Query: 567 LDDVLDXXXXXXXXXXXXXMD-KTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFI 624
+ V D KT+R+W +K C+K +H +VT + F+ Y +
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVV 396
Query: 625 SGSLDAKVRIW 635
+GS+D V++W
Sbjct: 397 TGSVDQTVKVW 407
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 41/209 (19%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VD 644
DKT+++W + + C+K F+ H ++V ++ N D S S D VR+W + ++ +
Sbjct: 213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE 271
Query: 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704
+ +V + P+ + + GS K + P L S + I
Sbjct: 272 LREHRHVVECISWAPESSYSSISEATGS------ETKKSGKPGPFLLSG----SRDKTIK 321
Query: 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764
+ + G LV D+ +R V L H + G++++S ++D
Sbjct: 322 MWDVSTGMCLMTLV-GHDNWVRGV----LFH-----------------SGGKFILSCADD 359
Query: 765 SYVYVWKYEAESRPSRSKSITVTHSYEHF 793
+ VW Y+ + + + +++EHF
Sbjct: 360 KTLRVWDYKNK------RCMKTLNAHEHF 382
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT++++ + + L+I +H D V C F+ DDR+ + S+D KV+IW+ ++V
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFS-TDDRFIATCSVDKKVKIWNSMTGELVHT 700
Query: 646 NDLH-EMVTAACYTPDGQGALVGSYKGSCHL 675
D H E V +T L+ + C L
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 43/253 (16%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE 514
H ++W I+F+ D + L S+ +D I VW + L+ + G E
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVW----------------NWQLDKCIFLRGHQE 1051
Query: 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV-VPETVFALSDKPICSFQGHLDDVLDX 573
D L K R S S D V V + +K QG +
Sbjct: 1052 TVK------DFRLLKNSR-----LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC--D 1098
Query: 574 XXXXXXXXXXXXMDKTVRLWHLSSKTCL-KIFSHSDYVTCIQFNPVDDRYFISGSLDAKV 632
DKT ++W L ++ H+ V C F+ VD +G + ++
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEI 1157
Query: 633 RIWSIPERQVVDW-NDLHE--------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683
RIW++ +++ L E VT C++PDG+ ++ S G +N +
Sbjct: 1158 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK--MLISAGGYIKWWNVVTGES 1215
Query: 684 QQKSPINLQNKKK 696
Q N N KK
Sbjct: 1216 SQTFYTNGTNLKK 1228
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
L E++ HNG + FS+D LA+ ++ I +W V GELL
Sbjct: 1123 LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV----SNGELL 1168
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL---- 503
K EI+AH + FS D R++A+ D + +W + E E E +
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFT 714
Query: 504 ---NMLLLANGSPE 514
+ LLLA GS +
Sbjct: 715 NSSHHLLLATGSSD 728
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDAKVRIWSIP-ERQVV 643
D+TVR+W + C +F H+ V C+ + +Y ++GS D + +W +P E V
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 644 DWNDLHEMVTAACYTPDGQGALVGSYKG 671
D + H+ +TP+ VG +G
Sbjct: 242 DHGEEHDY-PLVFHTPEENPYFVGVLRG 268
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 87/232 (37%), Gaps = 47/232 (20%)
Query: 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH-------- 502
++ H+G +W++K++ G L S D + VW + +KG E GH
Sbjct: 157 QLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDI----KKGCCTHVFE-GHNSTVRCLD 210
Query: 503 ----LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558
N+ + GS + T H+ K + S+ D+ +V T +
Sbjct: 211 IVEYKNIKYIVTGSRDNTL--------HVWKLPKESSVPDHGEEHDYPLVFHTP---EEN 259
Query: 559 P--ICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615
P + +GH V D T+ +W ++ CL I S H+D + +
Sbjct: 260 PYFVGVLRGHXASV-RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG 667
+ R IS S D +RIW + ++ YT G ALVG
Sbjct: 319 DHERKR-CISASXDTTIRIWDLENGELX-------------YTLQGHTALVG 356
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 699 HQRKITGFQFAPGSSSEVLVT-SADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG 755
H + ++A G +LV+ S D +RV D H F+G +T + N
Sbjct: 161 HDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 756 RYVVSASEDSYVYVWKYEAES 776
+Y+V+ S D+ ++VWK ES
Sbjct: 218 KYIVTGSRDNTLHVWKLPKES 238
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PERQ 641
D +++W L+ + L + +H+ VTC+ +P D F+S S D ++ +W P Q
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ 207
Query: 642 VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701
+ + + A + + + G G+ L +T S + H +
Sbjct: 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------HSQ 258
Query: 702 KITGFQFAPGSSSEVLVTSADSRIRVVD 729
+TG F+P S + S D + V+D
Sbjct: 259 CVTGLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDAKVRIWSIP-ERQVV 643
D+TVR+W + C +F H+ V C+ + +Y ++GS D + +W +P E V
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 644 DWNDLHEMVTAACYTPDGQGALVGSYKG 671
D + H+ +TP+ VG +G
Sbjct: 242 DHGEEHDY-PLVFHTPEENPYFVGVLRG 268
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 47/232 (20%)
Query: 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE------------SERKGELLEKQ 498
++ H+G +W++K++ G L S D + VW + + + R +++E +
Sbjct: 157 QLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK 558
N+ + GS + T H+ K + S+ D+ +V T +
Sbjct: 216 -----NIKYIVTGSRDNTL--------HVWKLPKESSVPDHGEEHDYPLVFHTP---EEN 259
Query: 559 P--ICSFQGHLDDVLDXXXXXXXXXXXXXMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615
P + +GH+ V D T+ +W ++ CL I S H+D + +
Sbjct: 260 PYFVGVLRGHMASV-RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318
Query: 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG 667
+ R IS S+D +RIW + +++ YT G ALVG
Sbjct: 319 DHERKR-CISASMDTTIRIWDLENGELM-------------YTLQGHTALVG 356
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 699 HQRKITGFQFAPGSSSEVLVT-SADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANG 755
H + ++A G +LV+ S D +RV D H F+G +T + N
Sbjct: 161 HDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 756 RYVVSASEDSYVYVWKYEAES 776
+Y+V+ S D+ ++VWK ES
Sbjct: 218 KYIVTGSRDNTLHVWKLPKES 238
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 44/273 (16%)
Query: 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486
G E +R + K+ L L H I S+K++ DG ++ S + V +W V+
Sbjct: 126 GVENGELRLWNKTGALLNVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179
Query: 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546
G +++ H + + T S + +NH G ++ + + D
Sbjct: 180 S----GTVMQ-----HFEL--------KETGGSSINAENHSGDGSLG--VDVEWVDDDKF 220
Query: 547 VVPET-----VFALSDK-PICSFQGHLD--DVLDXXXXXXXXXXXXXMDKTVRLWHL--- 595
V+P V+ +++K P GH VL+ D T+R+WH
Sbjct: 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTLRIWHGGNG 279
Query: 596 SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM-VTA 654
+S+ C + HS + + V D IS S+D VR+WS+ + ++ + + + + A
Sbjct: 280 NSQNCF--YGHSQSIVSASW--VGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA 335
Query: 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687
+ DGQ V G ++Y+ KL KS
Sbjct: 336 GRISQDGQKYAVAFMDGQVNVYDLK--KLNSKS 366
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 48/211 (22%)
Query: 587 DKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI---PERQV 642
D ++LW L+ K C +F H++ V +F+P DD S S D +R+W + ER+
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKS 787
Query: 643 VDWN-----------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691
++ D+ +V ++ DG +V + K L++ + L
Sbjct: 788 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTS--------GL 838
Query: 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTS--------ADSRIRVVDG---IDLVHKFKGF 740
+ H I F+P V+ S DSR++V D + VH
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH----- 893
Query: 741 RNTNSQISASLTANGRYVVSASEDSYVYVWK 771
+ +G ++AS+D + VW+
Sbjct: 894 -------GVMFSPDGSSFLTASDDQTIRVWE 917
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 587 DKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT++++ + + L I +H D V C F+ DD Y + S D KV+IW ++V
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHT 701
Query: 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS----HQR 701
D H C+ + L L T N K +L K+ R+ H
Sbjct: 702 YDEHSEQVNCCHFTNKSNHL---------LLATGSNDFFLK-LWDLNQKECRNTMFGHTN 751
Query: 702 KITGFQFAPGSSSEVLVT-SADSRIRVVD 729
+ +F+P E+L + SAD +R+ D
Sbjct: 752 SVNHCRFSP--DDELLASCSADGTLRLWD 778
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
E++ HNG + FSLDG LA+ ++ I +W V + G+LL
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD----GQLL 1169
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
H ++ I+F+ DG+ L S+ ED VI VW
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 48/211 (22%)
Query: 587 DKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI---PERQV 642
D ++LW L+ K C +F H++ V +F+P DD S S D +R+W + ER+
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKS 780
Query: 643 VDWN-----------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691
++ D+ +V ++ DG +V + K L++ + L
Sbjct: 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTS--------GL 831
Query: 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTS--------ADSRIRVVDG---IDLVHKFKGF 740
+ H I F+P V+ S DSR++V D + VH
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH----- 886
Query: 741 RNTNSQISASLTANGRYVVSASEDSYVYVWK 771
+ +G ++AS+D + VW+
Sbjct: 887 -------GVMFSPDGSSFLTASDDQTIRVWE 910
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 587 DKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
DKT++++ + + L I +H D V C F+ DD Y + S D KV+IW ++V
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHT 694
Query: 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS----HQR 701
D H C+ + L L T N K +L K+ R+ H
Sbjct: 695 YDEHSEQVNCCHFTNKSNHL---------LLATGSNDFFLK-LWDLNQKECRNTMFGHTN 744
Query: 702 KITGFQFAPGSSSEVLVT-SADSRIRVVD 729
+ +F+P E+L + SAD +R+ D
Sbjct: 745 SVNHCRFSP--DDELLASCSADGTLRLWD 771
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495
E++ HNG + FSLDG LA+ ++ I +W V + G+LL
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD----GQLL 1162
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW 483
H ++ I+F+ DG+ L S+ ED VI VW
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 50/199 (25%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP---ERQV 642
DKT+RLW L + T K F H V + F+P D+R +S + ++++W+I +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSS 155
Query: 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702
+ + + V+ Y+P + A NK+Q
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSA----------------NKVQP----------------- 182
Query: 703 ITGFQFAPGSSSEVLVTSADSRIRVVD-GIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761
FAP +S D R++V + + + FK + + +S ++ NG+Y+ +
Sbjct: 183 -----FAPYFAS----VGWDGRLKVWNTNFQIRYTFKAHESNVNHLS--ISPNGKYIATG 231
Query: 762 SEDSYVYVWKYEAESRPSR 780
+D + +W + P R
Sbjct: 232 GKDKKLLIWDILNLTYPQR 250
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645
D + +W L ++T ++ F H+D +CI + D +G LD VR W + E + +
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 646 NDLHEMVTAACYTPDGQGALVG 667
+D + + Y P G+ VG
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVG 242
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 586 MDKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV 643
+D +RLW L + +K I + + F+P D +Y +G+ KV I+ + ++
Sbjct: 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703
+ + + + Y+PDG+ G+ G ++++ + KL H I
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---------TLEGHAMPI 209
Query: 704 TGFQFAPGSSSEVLVTSA-DSRIRVVD 729
F+P S++LVT++ D I++ D
Sbjct: 210 RSLTFSP--DSQLLVTASDDGYIKIYD 234
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSL 518
I SI +S DG+YLAS D +I+++ + G+LL E GH + SP+ L
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIA----TGKLLHTLE-GHAMPIRSLTFSPDSQLL 221
Query: 519 SPKHLDNHLE 528
D +++
Sbjct: 222 VTASDDGYIK 231
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488
HNG +WS+ ++L G L+SAG+D + +W+ S
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 336
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488
HNG +WS+ ++L G L+SAG+D + +W+ S
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488
HNG +WS+ ++L G L+SAG+D + +W+ S
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEKQEDGHLNML 506
AH+GS++ + +S DG +ASA D I +W V ++ E+ + + ED L ++
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 414 SSATDDSQDVSFH-GQERVRVRQYGKSCKDLTALYK--------CQEIQAHNGSIWSIKF 464
+S T D + V +H QE + Y D LY+ C ++ H ++WS+ F
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASY----DDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 465 SLDGRYLASAGEDCVIHVWQ 484
G+ LAS +D + +W+
Sbjct: 203 DPSGQRLASCSDDRTVRIWR 222
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 587 DKTVRLWHLSSKTCLK----IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D+ + +W S T K + +H+ V C+ FNP + +GS D V +W +
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
DKTV LW L + K L F SH D + + ++P ++ S D ++ +W +
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 587 DKTVRLWHLSSKTCLK----IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D+ + +W S T K + +H+ V C+ FNP + +GS D V +W +
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
DKTV LW L + K L F SH D + + ++P ++ S D ++ +W +
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELL 495
GKS + L + QE G I+++ + LD + A+ G D I VW V S+ + L
Sbjct: 236 GKSGEFLKYIEDDQE--PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL 292
Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542
+KQ+ G+ + ++A G+ SLS LD L G K++S
Sbjct: 293 DKQQLGNQQVGVVATGNGRIISLS---LDGTLNFYELGHDEVLKTIS 336
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 437 GKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELL 495
GKS + L + QE G I+++ + LD + A+ G D I VW V S+ + L
Sbjct: 236 GKSGEFLKYIEDDQE--PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL 292
Query: 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542
+KQ+ G+ + ++A G+ SLS LD L G K++S
Sbjct: 293 DKQQLGNQQVGVVATGNGRIISLS---LDGTLNFYELGHDEVLKTIS 336
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 587 DKTVRLWHL----SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D+ + +W +SK + +H+ V C+ FNP + +GS D V +W +
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
DKTV LW L + K L F SH D + +Q++P ++ S D ++ +W +
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 587 DKTVRLWHL----SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D+ + +W +SK + +H+ V C+ FNP + +GS D V +W +
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 309
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
DKTV LW L + K L F SH D + +Q++P ++ S D ++ +W +
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 587 DKTVRLWHL----SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D+ + +W +SK + +H+ V C+ FNP + +GS D V +W +
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
DKTV LW L + K L F SH D + +Q++P ++ S D ++ +W +
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP-DGQGA 664
H V +Q+ P D F S S D +++W Q D + E V + +P +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 665 LV-----GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719
LV G C L + S + + Q H+++I ++P +
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQ------------GHRQEILAVSWSPRYDYILATA 205
Query: 720 SADSRIRVVD 729
SADSR+++ D
Sbjct: 206 SADSRVKLWD 215
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 587 DKTVRLWHL----SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
D+ + +W +SK + +H+ V C+ FNP + +GS D V +W +
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 587 DKTVRLWHLSS-KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637
DKTV LW L + K L F SH D + +Q++P ++ S D ++ +W +
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-DSRIR---VVDGIDLVHKFKGFRN 742
S NLQ + ++H +IT +F P S E L++S+ D +++ V DG + G R
Sbjct: 126 SNFNLQREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRA 182
Query: 743 TNSQISASLTANGRYVVSASEDSYVYVWK 771
T + I ++ GR V+SAS D + +W+
Sbjct: 183 TVTDI--AIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-DSRIR---VVDGIDLVHKFKGFRN 742
S NLQ + ++H +IT +F P S E L++S+ D +++ V DG + G R
Sbjct: 123 SNFNLQREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRA 179
Query: 743 TNSQISASLTANGRYVVSASEDSYVYVWK 771
T + I ++ GR V+SAS D + +W+
Sbjct: 180 TVTDI--AIIDRGRNVLSASLDGTIRLWE 206
>pdb|3M2M|A Chain A, Rat Galectin-1 Complex With Lactose
pdb|3M2M|B Chain B, Rat Galectin-1 Complex With Lactose
pdb|3M2M|C Chain C, Rat Galectin-1 Complex With Lactose
pdb|3M2M|D Chain D, Rat Galectin-1 Complex With Lactose
pdb|3M2M|E Chain E, Rat Galectin-1 Complex With Lactose
pdb|3M2M|F Chain F, Rat Galectin-1 Complex With Lactose
pdb|3M2M|G Chain G, Rat Galectin-1 Complex With Lactose
pdb|3M2M|H Chain H, Rat Galectin-1 Complex With Lactose
Length = 134
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 700 QRKITGFQFAPGSSSEVLVT--SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757
+++ T F F PGS +EV +T AD I++ DG H+FK N + + A+G +
Sbjct: 71 EQRETAFPFQPGSITEVXITFDQADLTIKLPDG----HEFKFPNRLNMEAINYMAADGDF 126
Query: 758 VV 759
+
Sbjct: 127 KI 128
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
A + + H+ + ++++ DGR+LAS G D +++VW E
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487
+ K E++ H + S+ S DG +ASA D + +W+ E
Sbjct: 365 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
A + + H+ + ++++ DGR+LAS G D +++VW E
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487
+ K E++ H + S+ S DG +ASA D + +W+ E
Sbjct: 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489
A + + H+ + ++++ DGR+LAS G D +++VW E
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE----LLEKQED-----GH 502
I+ H + + +S DG YLA+ D + +W+ ES + E L E +D H
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 503 LNMLLLANGSPEPTSLSPKHLDNHLE 528
+ LLA+ S + T K D+ E
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWE 188
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIP-- 638
D +++LW +S+ C+ + V ++F+P + YF++ LD + I+ I
Sbjct: 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN-YFLA-ILDNVMKNPGSINIYEIERD 152
Query: 639 ----ERQVVDWNDLHEMV--------TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686
E V +H+++ T A ++ G+ + G G Y+ S N +
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS-NNYEYV 211
Query: 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729
I+L H++ I+ QF+P + + +S D+ +VD
Sbjct: 212 DSIDL-------HEKSISDMQFSP-DLTYFITSSRDTNSFLVD 246
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 596 SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649
SS+ L F+HS +V + FN + S D K+R W + ++ + ++H
Sbjct: 290 SSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 596 SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649
SS+ L F+HS +V + FN + S D K+R W + ++ + ++H
Sbjct: 280 SSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEM-----VTAACYTP 659
H VT +FNP D + S+DA V++W + R + D N + EM V AA + P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL--RNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 660 DGQGALV 666
L+
Sbjct: 260 TDSTKLL 266
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEM-----VTAACYTP 659
H VT +FNP D + S+DA V++W + R + D N + EM V AA + P
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL--RNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 660 DGQGALV 666
L+
Sbjct: 261 TDSTKLL 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,223,990
Number of Sequences: 62578
Number of extensions: 895417
Number of successful extensions: 2866
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2195
Number of HSP's gapped (non-prelim): 491
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)